#NEXUS BEGIN DATA; DIMENSIONS NTAX=42 NCHAR=118; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6 7 8"; MATRIX Acritophiomys_bowni 112??????3104122110220021100004221012220211004110110044221202101211111170420112222201243112044212420077042200402100101 Anadianomys_declivis ??2???????????????????0212001044201120202010000010102440202021?1???????????0110212201?42212022001020000??00?2012000200 Baluchimys_ganeshapher ??2??4???1100302100220??????????????224220200400101024422?202131??1210061000??31222012?20120401120200?7??00?0012330200 Baluchimys_krabiense ??2114113????????????????????????????2422020040010101442202021?1???????????0113222301224212042012420000000000012220200 Birbalomys_spp 10211000021104022121200212001144102101422020230010102440122021011?1100061000110222421?40212020000010000030002012200200 Birkamys_korai 112??????21002001002202?????????????0220200004022110344222202141211212170402??????????43012041212020077832210412000300 Bugtimys_zafarullahi ?1212511??????????????021100004022216240200004021010044220202101211211100020113222201244412042112420022202220212400401 Canaanimys_maquiensis ????????????24??122020??????????????20402040040010101442422021????????????????????????43402044212324000000000412240400 Chapattimys_wilsoni 10210000141022021021200212001040212120422020121000102440022021?1???????????0100212321240212020000010000030002012200201 Confiniummys_sidiki ?????????0210020100220001000000000012222211004001010244220202121???????????021400000104421203411242000?000000012100300 Diamantomys_luederitzi 11212211222104411021202?????????????8220200024021110444242202121112212140422??????????444220442?242004???2??0412400400 Gaudeamus_aegyptius 1121?4???0004042123123021000000300?120412030040011104401612021412??????????0114102311242222044212024066652220412040400 Gaudeamus_aslius 112??????0004442123123021000001310213043203104001110243061202141212214160400114152301242222044212023066652210412340400 Gaudeamus_hylaeus 112??????00000421231240211000003102130412031040011103400612021412??????????0114152301242322044212024066652220412040400 Hodsahibia_spp ??21241034202422124220021100014021112220200014121010144210202121??1211100020110212221244112041112420022202220112320401 Lindsaya_derabugtiensis ??2??????4110302110220??????????????0220202004001010244222202131??12100610001142222012422020400111200000?0000012220200 Lophibaluchia_spp ??2??????4010301102220??????????????2241202004021010144222202131??121114001???????????44212043012320044462220012220400 Metaphiomys_beadnelli 11211611621012021001202?????????????4220200004021110144221202121?12212140422??????????42212044212320044002220412200400 Mubhamys_vadumensis ?12??????1000200100220??????????????5220200004022110344222202141211212160302??????????43212031212020066662210312000300 Neophiomys_paraphiomyoides ?12??????21002021002102?????????????0220200004020110344222202121??????????????????????432?2044212420077??22?0412200300 Ottomania_proavita ?????????1210002100220000000000001012230212004101110044222201121?1021003102021400000104421?031112420008100220012100400 Paraphiomys_spp 11212611442104001001202?????????????2220220004021010444240202121222212140422??????????42212044212220045652220412200400 Paraphiomys_simonsi 11???????201030?1001202?????????????8220220104021110444242202101?12212140402??????????42112040112{2 4}20044??22?041220030? Paraulacodus_indicus ??2??????41104001101222????????????182002200040210104422622?21?1??2212160402??????????42212044212020066652220412400400 Petrokozlovia_notos 1021?????????????????00210012240102080222000020010104440022001011?12???????0100212200?22222020000020000??00?0012000200 Phiocricetomys_minutus ?12??????21102001002232?????????????0020200004012110444211-021-1??????????????????????????2???????????????????????0200 Phiomys_andrewsi 112??????210020210022002100010332201022020000402011014422220212120?????????0112222201043212044212420077??22?0412200300 Phiomys_hammudai ?????????1102322110220021100004310112020202004?10010144221202121???????????0114222201244212043212420077042220412100101 Phiomys_lavocati 112??????2110200100220021200104000?10030200004011110444212202131211211100002??????????420?203111102006???2??0012200200 Prepomonomys_bogenfelsi ?1???????2100242100220??????????????621021000401101004424020200???????????????????????420{0 1}00442124200?446?220412210200 Protophiomys_tunisiensis ??211311?3100300100220021000104221011110200004001110244220202121??1211100110112222421143201041112220000201100112220301 Protophiomys_aegyptensis ??2??????1112322112220??????????????2132202104001010244221202121??1211101000114222201144212044112220000042110212220301 Protophiomys_algeriensis ??212411521114321122200210010043111120322020040011102442222021?1??1212101120112212201?44212044112220000041220012220300 Protophiomys_durattalahensis ?????????0104322110220??????????????2032202004?01110144220202121??1211170310112222201244212044112320000042100312230300 Protophiomys_aff_durattalahensis ??????????????????????021100004210112032202004?01010144220202121??1211140020114222201244212043112420000042200312230300 Talahphiomys_lavocati ?????????2110100111220??????????????0010?01004021?1044421120214???121116000???????????42212041112020044042200012100200 Talahphiomys_libycus ????????????????????????????????????0110?01004011?104442112?21????121116001???????????42212041?12320065042100012220200 Thryonomys_swinderianus 11214401401041401200212?????????????8210200004001110444262202131222212160402??????????43002044?0202006446222?412000400 Tsaganomys_altaicus 212144112220024220?120031200104420?180422000040010100440622?202121221200100011?222201114020044?00020000000000012000400 Turkanamys_hexalophus ??21141?6??????????????2110000222021404020200401111004422020210?????????????10?2?1??12442000432124200?7???2?0412110301 Waslamys_attiai ?12??????1102321111220021100104410112032202004101110144220202121?112111713201022222012442120411123200(0 4 7)0032000112230301 Yuomys_cavioides 102???????????????????0212011044100080002000040010104440202001211??????????0110212001?42310200000020000000000012000400 ; END; ctype ord: 5 10-11 13-21 22 23 25-26 29-35 38-46 48-49 53-56 58-59 61 63 65-68 74 75 76-77 79-80 82-84 86-95 97-98 100 106-110 112-114 116; outgroup Birbalomys_spp; constraint root = 1-.; calibrate Acritophiomys_bowni=uniform(33.9,35) Anadianomys_declivis=Uniform(37.8,42.5) Baluchimys_ganeshapher=Uniform(23,33.9) Baluchimys_krabiense=Uniform(31,35) Birbalomys_spp=Uniform(44.5,47.8) Birkamys_korai=uniform(33.9,35) Bugtimys_zafarullahi=Uniform(23,33.9) Canaanimys_maquiensis=Uniform(40.9,41.6) Chapattimys_wilsoni=Uniform(44.5,47.8) Confiniummys_sidiki=Uniform(28.1,37.8) Diamantomys_luederitzi=Uniform(19,21) Gaudeamus_aegyptius=uniform(33.7,33.9) Gaudeamus_aslius=uniform(33.9,35) Gaudeamus_hylaeus=uniform(33.9,35) Hodsahibia_spp=Uniform(23,33.9) Lindsaya_derabugtiensis=Uniform(23,33.9) Lophibaluchia_spp=Uniform(23,33.9) Metaphiomys_beadnelli=Uniform(29.2,30) Mubhamys_vadumensis=uniform(33.9,35) Neophiomys_paraphiomyoides=Uniform(30.6,31) Ottomania_proavita=Uniform(28.1,37.8) Paraulacodus_indicus=Uniform(12.5,12.9) Paraphiomys_simonsi=Uniform(29.2,30) Paraphiomys_spp=Uniform(15,17.8) Petrokozlovia_notos=Uniform(42.5,46) Phiocricetomys_minutus=Uniform(29.2,30) Phiomys_andrewsi=uniform(33.7,33.9) Phiomys_hammudai=Uniform(31,39.6) Phiomys_lavocati=Uniform(31,33.2) Prepomonomys_bogenfelsi=Uniform(20,47) Protophiomys_aegyptensis=Uniform(36.7,37.8) Protophiomys_algeriensis=Uniform(33.9,41.2) Protophiomys_durattalahensis=Uniform(31,39.6) Protophiomys_aff_durattalahensis=Uniform(31,39.6) Protophiomys_tunisiensis=Uniform(37.7,41.7) Talahphiomys_lavocati=Uniform(31,39.6) Talahphiomys_libycus=Uniform(31,39.6) Thryonomys_swinderianus=Fixed(0) Tsaganomys_altaicus=Uniform(31,33.2) Turkanamys_hexalophus=Uniform(23,33.9) Waslamys_attiai=Uniform(36.7,37.8) Yuomys_cavioides=Uniform(37.8,42.5); calibrate root=uniform(47.8,55); prset brlenspr=clock:fossilization; prset speciationpr=exp(50); prset extinctionpr=beta(1,1); prset fossilizationpr=beta(1,1); prset sampleprob=0.005; prset samplestrat=fossiltip; prset clockvarpr=igr; prset igrvarpr=exp(3); prset nodeagepr=calibrated; prset clockratepr=normal(0.25,0.05); lset coding=variable rates=gamma; unlink statefreq=(all) revmat=(all) shape=(all) pinvar=(all); prset applyto=(all) ratepr=variable; mcmcp ngen=50000000 relburnin=yes burninfrac=0.25 printfreq=1000 samplefreq=1000 nchains=4 temp=0.01 savebrlens=yes;