## Install 
## 1) BLAST 
## 2) probis-2.4.2


setenv FASTADIR $cwd/FASTADIR
churnerPWBlast.pl -out pairwisescore -lis list.uniprotids
sortOnLast.pl -in pairwisescore
# pairwisescore.sort contains the sorted matches

setenv PDBDIR $cwd/PDBDIR
newfile.csh  pairwisescoreProbis
churnerPWProbis.pl -out pairwisescoreProbis -lis list.pdbs
\rm -rf *rota.pdb
sortOnLast.pl -in pairwisescoreProbis