This file was generated from CP009125.1 by the OperOn.py script (v. 1.10) with the following options: -g 200 -i 700 -t -p -o Regulator Gene Locus_tag Product >RbsR [nhmmer score 22.5 E-value 0.00038 Pos=-108], [nhmmer score 23.2 E-value 0.00024 Pos=-31] >CRP [nhmmer score 6.7 E-value 110.0 Pos=-100] rbsD GZ59_00100 high affinity ribose transport protein rbsA GZ59_00110 ribose transport ATP-binding protein rbsC GZ59_00120 ribose transport permease system protein rbsB GZ59_00130 ribose-binding periplasmic protein (terminator conf=79, tail_score=-2.78813) >NtrC [nhmmer score 7.9 E-value 48.0 Pos=-30] ntrB GZ59_00330 nitrogen regulation two-component system, histidine kinase ntrC GZ59_00320 nitrogen regulation two-component system, response regulator (terminator conf=100, tail_score=-5.64006) >RpoN alternative sigma factor [nhmmer score 12.5 E-value 1.0 Pos=-104] glnA GZ59_00340 glutamine synthetase (terminator conf=100, tail_score=-5.00616) (terminator conf=100, tail_score=-5.00616) glnA GZ59_00340 glutamine synthetase >NtrC [nhmmer score 8.7 E-value 25.0 Pos=-217], [nhmmer score 10.1 E-value 8.4 Pos=-199], [nhmmer score 9.3 E-value 15.0 Pos=-167] >CRP [nhmmer score 7.6 E-value 56.0 Pos=-126] typA GZ59_00350 GTP-binding regulatory protein (terminator conf=100, tail_score=-2.55034) >CpxR [nhmmer score 7.1 E-value 120.0 Pos=-103] - GZ59_00380 putative GNAT-family acetyltransferase/thioesterase (terminator conf=95, tail_score=-3.14051) >PurR [nhmmer score 10.8 E-value 2.9 Pos=-75] xanP GZ59_00400 xanthine permease XanP (terminator conf=100, tail_score=-4.86133) >FNR [nhmmer score 6.9 E-value 94.0 Pos=-255] pagC GZ59_00500 outer membrane beta-barrel protein - GZ59_00510 diguanylate phosphodiesterase - GZ59_00520 putative exported protein >FNR [nhmmer score 6.5 E-value 130.0 Pos=-143] >PhoB [nhmmer score 16.1 E-value 0.077 Pos=-88] pitA GZ59_00530 low-affinity inorganic phosphate transporter (terminator conf=100, tail_score=-5.2197) >FNR [nhmmer score 7.0 E-value 86.0 Pos=-235] gdhA GZ59_00560 NADP-specific glutamate dehydrogenase (terminator conf=79, tail_score=-3.04792) >Fur [nhmmer score 10.4 E-value 9.7 Pos=-51] - GZ59_00620 FecI-like RNA polymerase sigma factor - GZ59_00630 FecR-like transmembrane sensor - GZ59_00650 hypothetical protein >ModE [nhmmer score 19.1 E-value 0.01 Pos=-294] rsmJ GZ59_00660 Ribosomal RNA large subunit methyltransferase J gor GZ59_00670 putative glutathione reductase (terminator conf=100, tail_score=-5.67063) >OxyR [nhmmer score 6.7 E-value 130.0 Pos=-79] gor GZ59_00670 putative glutathione reductase (terminator conf=100, tail_score=-5.67063) - GZ59_00680 hypothetical protein - GZ59_00690 hypothetical protein >Fur [nhmmer score 10.6 E-value 8.3 Pos=-101] - GZ59_00700 siderophore-interacting FAD-binding domain protein (terminator conf=83, tail_score=-3.25204) tkrA GZ59_00820 2-ketogluconate reductase >CRP [nhmmer score 9.8 E-value 9.6 Pos=-124] - GZ59_00830 methyl-accepting chemotaxis sensory transducer (terminator conf=90, tail_score=-3.32769) - GZ59_00840 putative GNAT-family acetyltransferase tag GZ59_00850 DNA-3-methyladenine glycosylase I >LexA [nhmmer score 9.4 E-value 17.0 Pos=-200] - GZ59_00860 hypothetical protein - GZ59_00870 glycyl-tRNA synthetase, alpha subunit glyS GZ59_00880 glycine-tRNA synthetase, beta subunit (terminator conf=81, tail_score=-3.01089) (terminator conf=100, tail_score=-3.7697) - GZ59_00890 hypothetical protein - GZ59_00900 flagellar motor protein MotB smc GZ59_00910 Chromosome partition protein Smc >KdgR [nhmmer score 10.4 E-value 7.5 Pos=-218] - GZ59_00920 hypothetical protein >CRP [nhmmer score 13.5 E-value 0.48 Pos=-348], [nhmmer score 11.1 E-value 3.4 Pos=-304], [nhmmer score 9.5 E-value 12.0 Pos=-231], [nhmmer score 7.2 E-value 73.0 Pos=-187] mtlA GZ59_00930 PTS system, mannitol-specific IIabc component (terminator conf=100, tail_score=-5.44837) >FliA alternative sigma factor [nhmmer score 14.9 E-value 0.27 Pos=-166] - GZ59_00970 methyl-accepting chemotaxis protein (terminator conf=95, tail_score=-3.18912) >ArcA [nhmmer score 10.3 E-value 5.9 Pos=-33], [nhmmer score 13.1 E-value 0.68 Pos=-92] >Fur [nhmmer score 9.2 E-value 26.0 Pos=-108] sodA GZ59_00980 manganese superoxide dismutase (terminator conf=77, tail_score=-3.48063) xylB GZ59_01020 xylulose kinase xylA GZ59_01030 xylose isomerase >CpxR [nhmmer score 7.0 E-value 130.0 Pos=-16] xylF GZ59_01040 D-xylose-binding periplasmic protein xylG GZ59_01050 D-xylose transport ATP-binding protein xylH GZ59_01060 xylose transport system permease xylR GZ59_01070 xylose operon regulatory protein >KdgR [nhmmer score 19.2 E-value 0.0086 Pos=-88] - GZ59_01080 DJ-1-like protein - GZ59_01080 DJ-1-like protein >ArgR [nhmmer score 13.1 E-value 0.88 Pos=-352] argG GZ59_01090 argininosuccinate synthetase (terminator conf=100, tail_score=-6.08563) >PhoP [nhmmer score 10.4 E-value 8.8 Pos=-194] expI GZ59_01100 Acyl-homoserine-lactone synthase >Fur [nhmmer score 11.8 E-value 3.3 Pos=-273] >KdgR [nhmmer score 9.5 E-value 15.0 Pos=-278] expR GZ59_01110 transcriptional activator protein ExpR - GZ59_01220 hypothetical protein - GZ59_01230 putative plasmid-related protein >FNR [nhmmer score 6.8 E-value 110.0 Pos=-467] >RhaS [nhmmer score 26.5 E-value 2.6e-05 Pos=-278] aldA GZ59_01240 aldehyde dehydrogenase A lctD GZ59_01250 L-lactate dehydrogenase - GZ59_01260 putative membrane protein (terminator conf=81, tail_score=-3.06501) >KdgR [nhmmer score 10.8 E-value 5.4 Pos=-139] - GZ59_01410 hypothetical protein - GZ59_01400 hypothetical protein - GZ59_01380 - - GZ59_01370 hypothetical protein >RpoN alternative sigma factor [nhmmer score 11.2 E-value 2.7 Pos=-84] >NtrC [nhmmer score 9.0 E-value 19.0 Pos=-145] - GZ59_01430 LysR-family transcriptional regulator - GZ59_01420 hypothetical protein (terminator conf=100, tail_score=-4.94992) >OxyR [nhmmer score 6.0 E-value 220.0 Pos=-15] secB GZ59_01830 protein-export protein gpsA GZ59_01840 glycerol-3-phosphate dehydrogenase [NAD(P)+] metR GZ59_01910 transcriptional activator protein >MetR [MAST score 1457.16 P-value 6.28e-06 Pos=-106] >MetJ [nhmmer score 11.0 E-value 3.3 Pos=-43], [nhmmer score 9.8 E-value 8.1 Pos=-35] metE GZ59_01920 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (terminator conf=100, tail_score=-5.32699) >FliA alternative sigma factor [nhmmer score 13.6 E-value 0.71 Pos=-264] - GZ59_01930 methyl-accepting chemotaxis protein (terminator conf=80, tail_score=-3.30243) >PhoP [nhmmer score 9.5 E-value 19.0 Pos=-404] >FliA alternative sigma factor [nhmmer score 9.5 E-value 16.0 Pos=-365] >AscG [nhmmer score 11.6 E-value 1.4 Pos=-360] - GZ59_01950 methyl-accepting chemotaxis protein (terminator conf=85, tail_score=-4.21462) (terminator conf=86, tail_score=-4.43208) - GZ59_01960 putative carboxymethylenebutenolidase >CRP [nhmmer score 9.1 E-value 17.0 Pos=-197] >FNR [nhmmer score 6.7 E-value 110.0 Pos=-196] >CpxR [nhmmer score 7.8 E-value 71.0 Pos=-126] udp GZ59_01970 uridine phosphorylase (terminator conf=81, tail_score=-3.99592) (terminator conf=100, tail_score=-4.07568) argE GZ59_02030 acetylornithine deacetylase >ArgR [nhmmer score 14.8 E-value 0.23 Pos=-158] argC GZ59_02040 putative N-acetyl-gamma-glutamyl-phosphate reductase argB GZ59_02050 acetylglutamate kinase argH GZ59_02060 argininosuccinate lyase (terminator conf=79, tail_score=-4.73677) >LexA [nhmmer score 8.1 E-value 43.0 Pos=-63] rmuC GZ59_02070 DNA recombination protein ubiE GZ59_02080 ubiquinone/menaquinone biosynthesis methyltransferase ubiJ GZ59_02090 Ubiquinone biosynthesis protein UbiJ ubiB GZ59_02100 putative ubiquinone biosynthesis protein tatA GZ59_02110 sec-independent protein translocase tatB GZ59_02120 sec-independent protein translocase tatC GZ59_02130 sec-independent protein translocase protein (terminator conf=100, tail_score=-5.7946) >NarP [nhmmer score 6.5 E-value 170.0 Pos=-51] ubiE GZ59_02080 ubiquinone/menaquinone biosynthesis methyltransferase ubiJ GZ59_02090 Ubiquinone biosynthesis protein UbiJ ubiB GZ59_02100 putative ubiquinone biosynthesis protein tatA GZ59_02110 sec-independent protein translocase tatB GZ59_02120 sec-independent protein translocase tatC GZ59_02130 sec-independent protein translocase protein (terminator conf=100, tail_score=-5.7946) (terminator conf=93, tail_score=-4.97461) fadA GZ59_02190 3-ketoacyl-CoA thiolase fadB GZ59_02200 fatty oxidation complex alpha subunit >FadR [nhmmer score 9.0 E-value 18.0 Pos=-158] >ArcA [nhmmer score 9.1 E-value 15.0 Pos=-124] pepQ GZ59_02210 proline dipeptidase - GZ59_02220 hypothetical protein trkH GZ59_02230 Trk system potassium uptake protein hemG GZ59_02240 protoporphyrinogen oxidase >RpoN alternative sigma factor [nhmmer score 14.7 E-value 0.18 Pos=-136] >NtrC [nhmmer score 9.1 E-value 18.0 Pos=-252] aapJ GZ59_02760 general L-amino ABC transporter binding protein aapQ GZ59_02750 L-amino acid ABC transporter permease protein aapM GZ59_02740 L-amino acid ABC transporter permease protein aapP GZ59_02730 L-amino acid ABC transporter ATP-binding protein (terminator conf=87, tail_score=-3.61178) >FNR [nhmmer score 7.1 E-value 82.0 Pos=-116] - GZ59_02780 putative cystine-binding periplasmic protein (terminator conf=100, tail_score=-2.72049) >CpxR [nhmmer score 7.5 E-value 89.0 Pos=-104] dusB GZ59_02870 tRNA-dihydrouridine synthase B fis GZ59_02860 DNA-binding protein (terminator conf=100, tail_score=-5.33026) >CRP [nhmmer score 10.3 E-value 6.1 Pos=-39] >FNR [nhmmer score 8.2 E-value 34.0 Pos=-38] - GZ59_03080 transcriptional regulator, LysR family - GZ59_03070 hypothetical protein - GZ59_03060 hypothetical protein (terminator conf=81, tail_score=-3.53224) (terminator conf=100, tail_score=-5.26119) gltD GZ59_03430 glutamate synthase [NADPH] small chain gltB GZ59_03440 glutamate synthase [NADPH] large chain >CRP [nhmmer score 7.4 E-value 65.0 Pos=-307] - GZ59_03450 hypothetical protein arcB GZ59_03460 aerobic respiration control sensor protein >MetR [nhmmer score 12.3 E-value 1.8 Pos=-269] metC GZ59_03850 cystathionine beta-lyase >CpxR [nhmmer score 7.6 E-value 84.0 Pos=-83] dctP GZ59_03880 TRAP transporter periplasmic substrate binding subunit DctP >RpoE alternative sigma factor [nhmmer score 10.7 E-value 5.6 Pos=-495] exbB GZ59_03890 tonB-system energizer ExbB exbD GZ59_03900 biopolymer transport protein (terminator conf=76, tail_score=-4.78149) dctP GZ59_03880 TRAP transporter periplasmic substrate binding subunit DctP >KdgR [nhmmer score 13.0 E-value 1.0 Pos=-457] >CRP [nhmmer score 6.6 E-value 120.0 Pos=-312] exbB GZ59_03890 tonB-system energizer ExbB exbD GZ59_03900 biopolymer transport protein (terminator conf=76, tail_score=-4.78149) >ScrR [nhmmer score 15.5 E-value 0.074 Pos=-80] >CRP [nhmmer score 5.8 E-value 240.0 Pos=-160] scrY GZ59_03940 sucrose porin scrA GZ59_03930 PTS system, sucrose-specific IIBC subunit scrB GZ59_03920 sucrose-6-phosphate hydrolase scrR GZ59_03910 sucrose operon repressor scrR GZ59_03910 sucrose operon repressor scrB GZ59_03920 sucrose-6-phosphate hydrolase scrA GZ59_03930 PTS system, sucrose-specific IIBC subunit scrY GZ59_03940 sucrose porin scrK GZ59_03950 fructokinase >ScrR [nhmmer score 10.8 E-value 2.6 Pos=-372] >CRP [nhmmer score 5.7 E-value 250.0 Pos=-281] - GZ59_03960 hypothetical protein - GZ59_03970 hypothetical protein - GZ59_03980 putative DNA-binding protein >NrdR [nhmmer score 7.4 E-value 53.0 Pos=-102], [nhmmer score 6.4 E-value 120.0 Pos=-133] >FNR [nhmmer score 9.0 E-value 18.0 Pos=-187] nrdD GZ59_04060 anaerobic ribonucleoside-triphosphate reductase nrdG GZ59_04050 anaerobic ribonucleoside-triphosphate reductase activating protein >RpoN alternative sigma factor [nhmmer score 12.8 E-value 0.83 Pos=-66] >NtrC [nhmmer score 9.1 E-value 19.0 Pos=-192] - GZ59_04100 circularly-permuted ATP-grasp protein - GZ59_04090 Alpha-E domain protein - GZ59_04080 transglutaminase - GZ59_04070 NTN hydrolase fold proteasome-like peptidase (terminator conf=93, tail_score=-5.1101) pyrI GZ59_04120 aspartate carbamoyltransferase regulatory subunit pyrB GZ59_04130 aspartate carbamoyltransferase catalytic subunit >PurR [nhmmer score 8.0 E-value 28.0 Pos=-174] >KdgR [nhmmer score 14.6 E-value 0.3 Pos=-42] tabA GZ59_04140 toxin-antitoxin biofilm protein TabA (terminator conf=100, tail_score=-4.04397) argI GZ59_04150 ornithine carbamoyltransferase chain I >ArgR [nhmmer score 15.6 E-value 0.13 Pos=-130] - GZ59_04160 hypothetical protein (terminator conf=100, tail_score=-5.88061) >Rob [nhmmer score 16.7 E-value 0.054 Pos=-98] - GZ59_04360 putative exported lipase - GZ59_04480 HNH endonuclease family protein >SgaR [nhmmer score 14.3 E-value 0.18 Pos=-119] - GZ59_04490 putative lipoprotein (terminator conf=93, tail_score=-3.26471) >FliA alternative sigma factor [nhmmer score 12.6 E-value 1.6 Pos=-65] >Fur [nhmmer score 8.9 E-value 31.0 Pos=-169] >CRP [nhmmer score 8.8 E-value 20.0 Pos=-287] - GZ59_04530 methyl-accepting chemotaxis protein (terminator conf=76, tail_score=-4.7497) - GZ59_04540 hypothetical protein rhaD GZ59_04550 rhamnulose-1-phosphate aldolase rhaA GZ59_04560 L-rhamnose isomerase rhaB GZ59_04570 rhamnulokinase >RhaS [nhmmer score 25.9 E-value 4e-05 Pos=-261] rhaS GZ59_04580 L-rhamnose operon regulatory protein rhaR GZ59_04590 L-rhamnose operon transcriptional activator rhaT GZ59_04670 L-rhamnose-proton symport >RhaS [nhmmer score 17.4 E-value 0.02 Pos=-228] - GZ59_04680 hypothetical protein - GZ59_04690 putative zinc-binding dehydrogenase >ArcA [nhmmer score 10.4 E-value 5.6 Pos=-145] >SlyA [nhmmer score 12.8 E-value 1.3 Pos=-198] - GZ59_04720 Type VI secretion system effector, Hcp1 family - GZ59_04710 hypothetical protein - GZ59_04700 putative membrane protein >NadR [nhmmer score 11.4 E-value 3.7 Pos=-32] nadR GZ59_04800 transcriptional regulator of NAD metabolism >FliA alternative sigma factor [nhmmer score 8.1 E-value 48.0 Pos=-75] - GZ59_04840 hypothetical protein >PhoP [nhmmer score 9.7 E-value 16.0 Pos=-414] >RcsB [nhmmer score 7.8 E-value 55.0 Pos=-306] osmY GZ59_04860 osmotically inducible protein Y - GZ59_04870 putative membrane protein - GZ59_04880 hypothetical protein rihB GZ59_04890 TatD-family deoxyribonuclease >CRP [nhmmer score 9.5 E-value 11.0 Pos=-182] nupX GZ59_04900 Nucleoside permease (terminator conf=91, tail_score=-3.90425) (terminator conf=100, tail_score=-5.00616) - GZ59_04920 TonB-dependent siderophore receptor protein - GZ59_04930 putative iron transporter >Fur [nhmmer score 12.1 E-value 2.5 Pos=-263], [nhmmer score 11.1 E-value 5.8 Pos=-257], [nhmmer score 12.8 E-value 1.4 Pos=-61] >FNR [nhmmer score 12.7 E-value 0.93 Pos=-165] entC GZ59_04940 enterobactin synthetase component C (isochorismate synthase) entE GZ59_04950 enterobactin synthetase subunit E entB GZ59_04960 enterobactin synthetase component B (isochorismatase) entF GZ59_04970 enterobactin synthetase component F entA GZ59_04980 enterobactin synthetase component A (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase) - GZ59_04990 putative non-ribosomal peptide synthetase - GZ59_05000 putative non-ribosomal peptide synthetase - GZ59_05010 hypothetical protein >CRP [nhmmer score 6.6 E-value 120.0 Pos=-124] - GZ59_05020 hypothetical protein >FNR [nhmmer score 9.7 E-value 11.0 Pos=-102] fom1 GZ59_05030 phosphoenolpyruvate phosphomutase fom2 GZ59_05040 phosphonopyruvate decarboxylase - GZ59_05050 putative 2-hydroxy-3-oxopropionate reductase phnG GZ59_05060 putative phosphonate metabolism protein - GZ59_05070 phosphonate C-P lyase system protein PhnH phnI GZ59_05080 putative phosphonate metabolism protein PhnI phnJ GZ59_05090 putative phosphonate metabolism protein PhnJ phnK GZ59_05100 putative phosphonate ABC transporter ATP-binding protein - GZ59_05110 phosphonate C-P lyase system protein PhnL phnM GZ59_05120 putative phosphonate metabolism protein PhnM phnN GZ59_05130 putative phosphonate metabolism protein PhnN phnP GZ59_05140 putative phosphonate metabolism protein PhnP >Rob [nhmmer score 12.0 E-value 2.0 Pos=-334] >RcsB [nhmmer score 7.7 E-value 58.0 Pos=-213] >PmrA [nhmmer score 11.0 E-value 5.0 Pos=-191] wcaJ GZ59_05150 UDP-glucose lipid carrier transferase - GZ59_05160 putative capsular polysaccharide biosynthesis protein - GZ59_05170 putative capsular polysaccharide export protein - GZ59_05180 putative capsular polysaccharide biosynthesis protein - GZ59_05190 putative capsular polysaccharide bisynthesis protein - GZ59_05200 putative capsular polysaccharide bisynthesis protein - GZ59_05210 putative capsular polysaccharide bisynthesis glycosyl transferase - GZ59_05220 glycosyl transferase group 1 - GZ59_05230 alpha-D-GlcNAc alpha-1,2-L-rhamnosyltransferase - GZ59_05240 putative membrane protein - GZ59_05250 putative exported protein - GZ59_05260 putative capsular polysacharide biosynthesis transferase (terminator conf=91, tail_score=-5.04249) aspA1_2 GZ59_05390 aspartate ammonia-lyase >CRP [nhmmer score 7.3 E-value 69.0 Pos=-245] fxsA GZ59_05400 FxsA cytoplasmic membrane protein (terminator conf=100, tail_score=-4.32579) >RpoH heat shock alternative sigma factor [nhmmer score 16.4 E-value 0.055 Pos=-190] fxsA GZ59_05400 FxsA cytoplasmic membrane protein (terminator conf=100, tail_score=-4.32579) >RpoH heat shock alternative sigma factor [nhmmer score 17.2 E-value 0.024 Pos=-127] groES GZ59_05410 10 kDa chaperonin groEL GZ59_05420 60 kDa chaperonin (terminator conf=100, tail_score=-5.64274) >LexA [nhmmer score 8.8 E-value 26.0 Pos=-46], [nhmmer score 10.7 E-value 5.8 Pos=-25] lexA GZ59_05470 LexA repressor >UxuR [nhmmer score 14.7 E-value 0.19 Pos=-101] exuR GZ59_05600 exu regulon transcriptional regulator (terminator conf=79, tail_score=-3.04398) exuT GZ59_05610 galacturonate transporter >UxuR [nhmmer score 9.6 E-value 9.9 Pos=-249] >CRP [nhmmer score 6.8 E-value 100.0 Pos=-229] uxaC GZ59_05620 uronate isomerase (terminator conf=93, tail_score=-2.67709) >KdgR [nhmmer score 19.6 E-value 0.0067 Pos=-71] - GZ59_05650 Imp-YgjV family inner membrane protein >CRP [nhmmer score 6.1 E-value 180.0 Pos=-263] alx GZ59_05690 integral membrane protein, TerC family (terminator conf=100, tail_score=-3.50722) fadH GZ59_05730 2,4-dienoyl-CoA reductase, NADPH dependent >FadR [nhmmer score 8.6 E-value 25.0 Pos=-195] >ArcA [nhmmer score 8.5 E-value 24.0 Pos=-148] >CRP [nhmmer score 6.2 E-value 170.0 Pos=-128] - GZ59_05740 hypothetical protein >CueR [nhmmer score 16.5 E-value 0.057 Pos=-59] - GZ59_05770 putative exported protein (terminator conf=100, tail_score=-5.26119) >CRP [nhmmer score 7.8 E-value 46.0 Pos=-186] casF GZ59_05780 PTS system, beta-glucoside-specific IIABC subunit (terminator conf=100, tail_score=-4.386) >CRP [nhmmer score 6.4 E-value 140.0 Pos=-238] casB GZ59_05790 6-phospho-beta-glucosidase (terminator conf=100, tail_score=-4.23045) argR GZ59_05870 arginine repressor >ArgR [nhmmer score 14.8 E-value 0.25 Pos=-424] >ArcA [nhmmer score 10.1 E-value 7.0 Pos=-298] >PhoP [nhmmer score 11.9 E-value 2.9 Pos=-67] mdh GZ59_05880 malate dehydrogenase (terminator conf=100, tail_score=-5.45813) >RpoE alternative sigma factor [nhmmer score 9.1 E-value 19.0 Pos=-191] greA GZ59_05990 transcription elongation factor (terminator conf=89, tail_score=-4.52589) >RpoH heat shock alternative sigma factor [nhmmer score 16.3 E-value 0.06 Pos=-122] rrmJ GZ59_06010 ribosomal RNA large subunit methyltransferase ftsH GZ59_06020 ATP-dependent metalloprotease FtsH (terminator conf=100, tail_score=-5.03715) >PhoP [nhmmer score 9.5 E-value 18.0 Pos=-121] evr GZ59_06090 virulence regulator - GZ59_06280 hypothetical protein >CRP [nhmmer score 12.7 E-value 0.91 Pos=-335], [nhmmer score 5.8 E-value 230.0 Pos=-283] >DeoR [nhmmer score 9.0 E-value 25.0 Pos=-331] deoC GZ59_06300 deoxyribose-phosphate aldolase deoA GZ59_06310 thymidine phosphorylase deoB GZ59_06320 phosphopentomutase deoD GZ59_06330 purine nucleoside phosphorylase (terminator conf=85, tail_score=-3.5032) >Fur [nhmmer score 12.3 E-value 2.1 Pos=-47], [nhmmer score 18.1 E-value 0.024 Pos=-41] fcuA GZ59_06340 putative ferric siderophore TonB-dependent receptor (terminator conf=93, tail_score=-4.21827) >Fur [nhmmer score 11.6 E-value 3.7 Pos=-41] >FNR [nhmmer score 6.9 E-value 93.0 Pos=-62] - GZ59_06450 putative membrane protein fucO GZ59_06490 lactaldehyde reductase >Rob [nhmmer score 10.9 E-value 4.5 Pos=-313] gcvT GZ59_06500 glycine cleavage system T protein (aminomethyltransferase) gcvH GZ59_06510 glycine cleavage system H protein (terminator conf=100, tail_score=-5.31091) >RafR [nhmmer score 13.9 E-value 0.24 Pos=-70], [nhmmer score 14.2 E-value 0.19 Pos=-91] >CRP [nhmmer score 5.6 E-value 260.0 Pos=-111] rafA GZ59_06610 alpha-galactosidase rafB GZ59_06600 putative raffinose permease (terminator conf=100, tail_score=-3.95378) (terminator conf=100, tail_score=-3.59979) rafR GZ59_06620 LysR-family raffinose operon repressor - GZ59_06630 Putative metal dependent phosphohydrolase of HD superfamily >FabR [nhmmer score 15.9 E-value 0.075 Pos=-156] hlyIII GZ59_06640 hemolysin III family protein >SlyA [nhmmer score 10.5 E-value 7.5 Pos=-448] - GZ59_06730 putative exported protein (terminator conf=100, tail_score=-5.38054) - GZ59_06890 hypothetical protein >FNR [nhmmer score 6.6 E-value 120.0 Pos=-42] yjcD GZ59_06900 xanthine/uracil permease family protein (terminator conf=100, tail_score=-2.7563) >Fur [nhmmer score 12.9 E-value 1.4 Pos=-210] - GZ59_06920 two component transcriptional regulator, winged helix family - GZ59_06930 two component system sensor kinase >FNR [nhmmer score 7.9 E-value 44.0 Pos=-170] >Fur [nhmmer score 12.6 E-value 1.7 Pos=-98] flp GZ59_06940 Flp/Fap pilin component tadV GZ59_06950 prepilin peptidase rcpC GZ59_06960 putative exported protein rcpA GZ59_06970 Flp pilus assembly secretin rcpB GZ59_06980 putative lipoprotein tadZ GZ59_06990 Flp pilus assembly protein TadZ tadA GZ59_07000 Flp pilus assembly ATPase TadA tadB GZ59_07010 Flp pilus assembly protein TadB tadC GZ59_07020 putative type IV pilus protein tadD GZ59_07030 putative membrane protein tadE GZ59_07040 Flp pilus assembly protein TadE - GZ59_07050 putative membrane protein tadG GZ59_07060 Flp pilus assembly protein TadG - GZ59_07070 putative outer membrane protein >RhaS [nhmmer score 29.0 E-value 4.3e-06 Pos=-287] rhiE GZ59_07120 rhamnogalacturonate lyase >CRP [nhmmer score 8.9 E-value 20.0 Pos=-283] >OxyR [nhmmer score 8.0 E-value 48.0 Pos=-359] acsA GZ59_07150 acetate/CoA ligase - GZ59_07140 putative membrane protein actP GZ59_07130 acetate permease (terminator conf=83, tail_score=-3.01918) >ArcA [nhmmer score 10.2 E-value 6.4 Pos=-469] >CpxR [nhmmer score 7.1 E-value 130.0 Pos=-356] hexY GZ59_07160 global regulatory protein >RbsR [nhmmer score 20.1 E-value 0.0024 Pos=-438] >Rob [nhmmer score 11.2 E-value 3.6 Pos=-211] - GZ59_07170 TonB-dependent siderophore receptor (terminator conf=100, tail_score=-5.0133) >Fur [nhmmer score 13.2 E-value 1.1 Pos=-44] - GZ59_07180 FecI-like RNA polymerase sigma factor - GZ59_07190 FecR-like transmembrane sensor - GZ59_07200 putative membrane protein (terminator conf=93, tail_score=-2.93991) (terminator conf=100, tail_score=-3.56937) togT GZ59_07220 oligogalacturonide transporter >KdgR [nhmmer score 14.7 E-value 0.27 Pos=-366], [nhmmer score 10.5 E-value 7.0 Pos=-344] >FNR [nhmmer score 7.4 E-value 62.0 Pos=-227] - GZ59_07230 putative membrane protein >RpoE alternative sigma factor [nhmmer score 6.6 E-value 130.0 Pos=-94] - GZ59_07400 Transcriptional regulator, AbiEi antitoxin, Type IV TA system - GZ59_07410 Nucleotidyl transferase AbiEii toxin, Type IV TA system >FNR [nhmmer score 7.2 E-value 74.0 Pos=-157] - GZ59_07440 hypothetical protein - GZ59_07430 addiction module toxin, RelE/StbE family (terminator conf=81, tail_score=-3.0263) (terminator conf=80, tail_score=-4.88228) - GZ59_07570 integrase family protein >FNR [nhmmer score 7.6 E-value 52.0 Pos=-500] - GZ59_07580 regulatory protein (terminator conf=83, tail_score=-5.46129) >FNR [nhmmer score 6.5 E-value 130.0 Pos=-270] - GZ59_07600 hypothetical protein - GZ59_07590 putative exported protein (terminator conf=93, tail_score=-4.94487) >RpoE alternative sigma factor [nhmmer score 7.3 E-value 75.0 Pos=-105] smpA GZ59_07740 putative outer membrane lipopotein (small protein A) (terminator conf=100, tail_score=-5.24129) >LexA [nhmmer score 12.8 E-value 1.2 Pos=-40], [nhmmer score 13.2 E-value 0.85 Pos=-62] recN GZ59_07750 DNA repair protein (terminator conf=81, tail_score=-3.20322) >RpoH heat shock alternative sigma factor [nhmmer score 19.6 E-value 0.004 Pos=-70] grpE GZ59_07770 co-chaperone GrpE (terminator conf=100, tail_score=-5.76237) >PdhR [nhmmer score 15.3 E-value 0.12 Pos=-86] >OxyR [nhmmer score 9.5 E-value 14.0 Pos=-83] >Fur [nhmmer score 13.7 E-value 0.74 Pos=-58] mntH GZ59_07780 Mn2+/Fe2+ transporter, NRAMP family (terminator conf=91, tail_score=-3.82811) >FNR [nhmmer score 7.1 E-value 82.0 Pos=-214] - GZ59_07840 putative sugar ABC transporter, periplasmic binding protein (terminator conf=100, tail_score=-3.48593) >FNR [nhmmer score 6.8 E-value 100.0 Pos=-222] - GZ59_07880 arabinogalactan endo-beta-1,4-galactanase >CpxR [nhmmer score 9.6 E-value 18.0 Pos=-210] - GZ59_07920 ABC transporter, periplasmic binding protein - GZ59_07910 ABC transporter permease protein - GZ59_07900 ABC transporter, ATP-binding protein - GZ59_07890 LacI-family transcriptional regulator >CRP [nhmmer score 9.5 E-value 11.0 Pos=-229] >FNR [nhmmer score 7.8 E-value 46.0 Pos=-228] bglH GZ59_07950 PTS system beta-glucoside-specific EIIBCA component bglD GZ59_07940 beta-glucosidase bglJ GZ59_07930 transcriptional antiterminator, BglJ (terminator conf=100, tail_score=-6.02919) (terminator conf=83, tail_score=-3.60112) rpiB GZ59_07990 ribose 5-phosphate isomerase >CRP [nhmmer score 7.4 E-value 64.0 Pos=-117] - GZ59_08000 hypothetical protein - GZ59_08010 putative transport protein dhaK GZ59_08020 dihydroxyacetone kinase tpiA_1 GZ59_08030 putative triosephosphate isomerase - GZ59_08040 Sugar phosphate isomerase - GZ59_08050 hypothetical protein - GZ59_08060 putative transcriptional regulator (terminator conf=79, tail_score=-3.09919) iutA GZ59_08120 TonB-dependent ferric aerobactin receptor >Fur [nhmmer score 9.8 E-value 16.0 Pos=-177], [nhmmer score 8.8 E-value 34.0 Pos=-159] - GZ59_08130 TonB family protein - GZ59_08140 TonB-dependent receptor plug (terminator conf=100, tail_score=-4.30014) >Mlc [nhmmer score 10.3 E-value 10.0 Pos=-319] ptsH GZ59_08300 PTS system phosphocarrier protein ptsI GZ59_08290 phosphoenolpyruvate-protein phosphotransferase crr GZ59_08280 PTS system, glucose-specific IIa component (terminator conf=100, tail_score=-4.55128) >RcsB [nhmmer score 7.4 E-value 72.0 Pos=-115] cysK GZ59_08310 cysteine synthase A (terminator conf=100, tail_score=-5.24129) >NsrR [nhmmer score 16.3 E-value 0.062 Pos=-357] tehB GZ59_08380 putative tellurite resistance protein (terminator conf=100, tail_score=-4.99035) >RpoN alternative sigma factor [nhmmer score 14.6 E-value 0.2 Pos=-71] norV GZ59_08400 anaerobic nitric oxide reductase flavorubredoxin norW GZ59_08390 NADH:flavoruberedoxin reductase (terminator conf=100, tail_score=-3.73775) (terminator conf=100, tail_score=-3.73775) norW GZ59_08390 NADH:flavoruberedoxin reductase norV GZ59_08400 anaerobic nitric oxide reductase flavorubredoxin >NorR [nhmmer score 12.6 E-value 1.6 Pos=-63], [nhmmer score 12.0 E-value 2.5 Pos=-38], [nhmmer score 10.8 E-value 5.9 Pos=-18] norR GZ59_08410 Anaerobic nitric oxide reductase transcription regulator NorR >Fur [nhmmer score 12.3 E-value 2.1 Pos=-336] fumA GZ59_08420 fumarate hydratase class I, aerobic >FNR [nhmmer score 9.7 E-value 11.0 Pos=-389] >CpxR [nhmmer score 7.5 E-value 92.0 Pos=-402] - GZ59_08520 putative component of polysulfide reductase - GZ59_08510 putative component of polysulfide reductase - GZ59_08500 putative membrane protein - GZ59_08490 FMN-binding domain protein - GZ59_08480 putative flavoprotein subunit of a reductase (terminator conf=100, tail_score=-3.83026) (terminator conf=100, tail_score=-5.80003) - GZ59_08530 alpha/beta hydrolase fold protein >CRP [nhmmer score 6.2 E-value 160.0 Pos=-220] - GZ59_08540 LysR-family transcriptional regulator rspA GZ59_08550 Bifunctional D-altronate/D-mannonate dehydratase rspB GZ59_08560 L-gulonate dehydrogenase, COG1063 family >RspR [nhmmer score 20.2 E-value 0.0029 Pos=-57] rspA GZ59_08550 Bifunctional D-altronate/D-mannonate dehydratase rspB GZ59_08560 L-gulonate dehydrogenase, COG1063 family >MetJ [nhmmer score 11.2 E-value 2.8 Pos=-50] - GZ59_08680 Biopolymer transport protein ExbD/TolR - GZ59_08670 TonB-like protein - GZ59_08660 TonB-dependent receptor >CRP [nhmmer score 9.2 E-value 15.0 Pos=-256] >BaeR [nhmmer score 13.6 E-value 0.31 Pos=-375] >RcsB [MAST score 1983.16 P-value 9.95e-10 Pos=-375] mdtG GZ59_08690 multidrug resistance efflux transport >SlyA [nhmmer score 11.5 E-value 3.3 Pos=-34] - GZ59_08730 putative acetyltransferase - GZ59_08720 LuxR-family transcriptional regulator - GZ59_08710 permease (terminator conf=79, tail_score=-5.26875) - GZ59_08780 putative fimbrial protein - GZ59_08790 putative fimbrial adhesin fimC GZ59_08800 periplasmic chaperone for type 1 fimbriae fimD GZ59_08810 fimbrial biogenesis outer membrane usher protein fimA GZ59_08820 type 1 fimbriae major subunit protein >PhoP [nhmmer score 9.6 E-value 17.0 Pos=-389] >FNR [nhmmer score 7.0 E-value 89.0 Pos=-355] >KdgR [nhmmer score 10.6 E-value 6.3 Pos=-265] - GZ59_08830 CadC family transcriptional regulator - GZ59_08840 putative exported protein >CueR [nhmmer score 21.0 E-value 0.002 Pos=-73] >CRP [nhmmer score 6.1 E-value 170.0 Pos=-143] >FNR [nhmmer score 12.6 E-value 1.1 Pos=-142] - GZ59_08870 hypothetical protein (terminator conf=100, tail_score=-3.90744) >RcsB [nhmmer score 11.1 E-value 4.1 Pos=-29] pilL GZ59_09180 putative Type IV pilus protein PilL pilM GZ59_09190 putative Type IV pilus protein PilM pilN GZ59_09200 putative Type IV pilus protein PilN pilO GZ59_09210 Pilin accessory protein (PilO) pilP GZ59_09220 putative Type IV pilus protein PilP pilQ GZ59_09230 putative Type IV pilus nucleotide-binding protein pilR GZ59_09240 putative type IV pilus protein PilR pilS GZ59_09250 putative type IV pilus prepilin pilT GZ59_09260 putative Type IV pilus protein PilT pilU GZ59_09270 putative prepilin peptidase pilV GZ59_09280 putative Type IV pilus prepilin protein (terminator conf=100, tail_score=-3.61398) cfa8B GZ59_09850 putative oxidoreductase cfa8A GZ59_09860 putative oxidoreductase cfa7 GZ59_09870 type I polyketide synthase cfa6 GZ59_09880 type I polyketide synthase cfa5 GZ59_09890 coronafacic acid synthetase, ligase component cfa4 GZ59_09900 coronafacic acid synthetase component cfa3 GZ59_09910 Cfa-beta-ketoacylsynthase cfa2 GZ59_09920 coronafacic acid dehydratase cfa1 GZ59_09930 Cfa-acyl carrier protein cfl GZ59_09940 coronafacate ligase >RcsB [nhmmer score 9.2 E-value 18.0 Pos=-89] - GZ59_09950 LysR-family transcriptional regulator >SlyA [nhmmer score 8.0 E-value 50.0 Pos=-73] - GZ59_09990 putative phage integrase (terminator conf=76, tail_score=-3.09581) (terminator conf=100, tail_score=-3.97368) - GZ59_10020 - - GZ59_10040 putative TetR-family transcriptional regulator >Fur [nhmmer score 10.1 E-value 13.0 Pos=-63] >FNR [nhmmer score 7.0 E-value 86.0 Pos=-55] - GZ59_10050 hypothetical protein - GZ59_10060 hypothetical protein (terminator conf=100, tail_score=-5.66684) >CRP [nhmmer score 6.8 E-value 99.0 Pos=-141] mutH GZ59_10190 DNA mismatch repair protein - GZ59_10320 putative lacI-family transcriptional regulator >CRP [nhmmer score 5.9 E-value 220.0 Pos=-92] lfeW GZ59_10330 mandelate racemase/muconate lactonizing protein >RcsB [nhmmer score 7.3 E-value 80.0 Pos=-217] >KdgR [nhmmer score 9.6 E-value 14.0 Pos=-196] >Fur [nhmmer score 11.1 E-value 5.5 Pos=-192] >GalR [nhmmer score 11.4 E-value 2.1 Pos=-49] rsmB GZ59_10600 - aepA GZ59_10610 exoenzymes regulatory protein >CRP [nhmmer score 7.3 E-value 69.0 Pos=-67] - GZ59_10960 hypothetical protein >Fur [nhmmer score 8.7 E-value 36.0 Pos=-213] fecA GZ59_11050 iron(III) dicitrate transport protein FecA fecR GZ59_11060 iron(III) dicitrate sensor protein fecI GZ59_11070 RNA polymerase sigma factor >Fur [nhmmer score 9.8 E-value 15.0 Pos=-236] - GZ59_11080 cyclic-di-GMP phosphodiesterase phnA GZ59_11090 putative phosphonoacetate hydrolase (terminator conf=78, tail_score=-4.64766) >UxuR [nhmmer score 9.9 E-value 7.4 Pos=-110] >CpxR [nhmmer score 9.1 E-value 25.0 Pos=-19] uxuA GZ59_11190 mannonate dehydratase (terminator conf=89, tail_score=-3.08438) >PhoP [nhmmer score 10.6 E-value 7.5 Pos=-177], [nhmmer score 10.3 E-value 9.4 Pos=-194], [nhmmer score 8.7 E-value 32.0 Pos=-208] - GZ59_11200 Pectate lyase (terminator conf=100, tail_score=-4.16205) - GZ59_11250 - >SlyA [nhmmer score 11.7 E-value 2.8 Pos=-382] - GZ59_11280 antimicrobial peptide efflux ABC transporter permease/ATPase >Rob [nhmmer score 11.4 E-value 3.2 Pos=-333] >RcsB [nhmmer score 6.8 E-value 120.0 Pos=-296] >CRP [nhmmer score 6.7 E-value 110.0 Pos=-75] >FliA alternative sigma factor [nhmmer score 9.6 E-value 15.0 Pos=-60] - GZ59_11320 methyl-accepting chemotaxis protein (terminator conf=85, tail_score=-3.54784) sbcC GZ59_11350 exonuclease - GZ59_11360 nuclease SbcCD, D subunit >PhoB [nhmmer score 15.8 E-value 0.097 Pos=-77] phoB GZ59_11370 phosphate regulon response regulator phoR GZ59_11380 phosphate regulon histidine kinase - GZ59_11390 putative phosphate binding protein >MetR [nhmmer score 10.4 E-value 7.8 Pos=-204] >MetJ [nhmmer score 14.0 E-value 0.32 Pos=-129] metE2 GZ59_11400 putative methionine synthase (terminator conf=100, tail_score=-5.25803) >OxyR [nhmmer score 6.3 E-value 170.0 Pos=-120] tsaA GZ59_11440 peroxiredoxin (terminator conf=100, tail_score=-5.27335) >RpoH heat shock alternative sigma factor [nhmmer score 18.1 E-value 0.016 Pos=-201] clpP GZ59_11760 ATP-dependent Clp protease proteolytic subunit clpX GZ59_11770 ATP-dependent Clp protease ATP-binding subunit (terminator conf=100, tail_score=-5.04249) >RpoH heat shock alternative sigma factor [nhmmer score 20.3 E-value 0.0022 Pos=-116] lon GZ59_11790 ATP-dependent protease Lon (terminator conf=100, tail_score=-5.93809) >FadR [nhmmer score 8.9 E-value 20.0 Pos=-43] fadM GZ59_11830 Long-chain acyl-CoA thioesterase FadM (terminator conf=77, tail_score=-5.00138) (terminator conf=100, tail_score=-5.48514) - GZ59_11840 hypothetical protein - GZ59_11850 putative pyridoxal-phosphate dependent protein >FNR [nhmmer score 6.9 E-value 94.0 Pos=-217] - GZ59_11860 AsnC-family transcriptional regulator mdlA GZ59_11870 ATP-binding component of ABC transporter mdlB GZ59_11880 ABC transporter related protein >NtrC [nhmmer score 11.0 E-value 4.0 Pos=-228] >RpoN alternative sigma factor [nhmmer score 12.8 E-value 0.79 Pos=-110] glnK GZ59_11890 nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB amtB GZ59_11900 putative ammonium transporter (terminator conf=100, tail_score=-5.08255) >Zur [nhmmer score 19.5 E-value 0.0048 Pos=-32] rpmE2 GZ59_11980 putative 50S ribosomal protein L31 (second copy) rpmJ2 GZ59_11970 putative 50S ribosomal protein L36 (second copy) (terminator conf=100, tail_score=-5.0133) acrB GZ59_11990 Multidrug efflux pump subunit AcrB acrA GZ59_12000 Multidrug efflux pump MFP subunit >AcrR [nhmmer score 25.2 E-value 8.2e-05 Pos=-14] acrR GZ59_12010 putative acrAB operon repressor >RpoH heat shock alternative sigma factor [nhmmer score 20.3 E-value 0.003 Pos=-85] htpG GZ59_12090 HSP90 chaperone protein (terminator conf=100, tail_score=-3.42768) >GlpR [nhmmer score 7.7 E-value 60.0 Pos=-88] yjiY GZ59_12170 putative carbon starvation protein (terminator conf=100, tail_score=-5.36441) >SdaR [nhmmer score 11.1 E-value 2.5 Pos=-140] >KdgR [nhmmer score 16.3 E-value 0.083 Pos=-38] pehN GZ59_12200 putative polygalacturonase (terminator conf=100, tail_score=-3.73775) (terminator conf=86, tail_score=-2.55085) copA GZ59_12230 copper-transporting P-type ATPase >CueR [nhmmer score 13.5 E-value 0.53 Pos=-32] cueR GZ59_12240 transcriptional regulator, MerR family >RcsB [nhmmer score 8.6 E-value 28.0 Pos=-345] nrdA GZ59_12280 ribonucleotide reductase of class Ia (aerobic) subunit alpha (terminator conf=100, tail_score=-3.08032) (terminator conf=100, tail_score=-5.63517) tyrP GZ59_12460 tyrosine-specific transport protein >TyrR [nhmmer score 13.5 E-value 0.66 Pos=-129] - GZ59_12470 putative molybdopterin binding protein (terminator conf=83, tail_score=-3.61398) >Fur [nhmmer score 15.0 E-value 0.27 Pos=-214] >FNR [nhmmer score 10.9 E-value 4.0 Pos=-103] hybO GZ59_12530 hydrogenase-2 small subunit hybA GZ59_12540 hydrogenase-2 operon protein hybB GZ59_12550 putative Ni/Fe-hydrogenase 2 B-type cytochrome subunit hybC GZ59_12560 hydrogenase-2 large subunit hybD GZ59_12570 hydrogenase 2 maturation protease hybE GZ59_12580 hydrogenase-2 component protein (terminator conf=100, tail_score=-4.13014) >SlyA [nhmmer score 8.8 E-value 27.0 Pos=-163] >NarP [nhmmer score 6.5 E-value 170.0 Pos=-52] hyfR GZ59_12640 hydrogenase-4 transcriptional activator (terminator conf=100, tail_score=-2.73994) (terminator conf=100, tail_score=-3.57263) hycI GZ59_12650 hydrogenase 3 maturation protease hyfJ GZ59_12660 hydrogenase-4 component J hyfI GZ59_12670 hydrogenase-4 component I hyfH GZ59_12680 hydrogenase-4 component H hyfG GZ59_12690 hydrogenase-4 component G hyfF GZ59_12700 hydrogenase-4 component F hyfE GZ59_12710 hydrogenase-4 component E hyfD GZ59_12720 hydrogenase-4 component D hyfC GZ59_12730 hydrogenase-4 component C hyfB GZ59_12740 hydrogenase-4 component B hyfA GZ59_12750 hydrogenase-4 component A >HyfR [nhmmer score 7.5 E-value 74.0 Pos=-390], [nhmmer score 10.0 E-value 10.0 Pos=-139] hydN GZ59_12760 electron transport protein fdhF GZ59_12770 formate dehydrogenase H hypF GZ59_12780 hydrogenase maturation protein hoxN GZ59_12790 high-affinity nickel transport protein (terminator conf=77, tail_score=-5.055) >RpoN alternative sigma factor [nhmmer score 11.0 E-value 3.2 Pos=-71] hydN GZ59_12760 electron transport protein fdhF GZ59_12770 formate dehydrogenase H hypF GZ59_12780 hydrogenase maturation protein hoxN GZ59_12790 high-affinity nickel transport protein (terminator conf=77, tail_score=-5.055) purN GZ59_12800 phosphoribosylglycinamide formyltransferase purM GZ59_12810 phosphoribosylformylglycinamidine cyclo-ligase >PurR [nhmmer score 10.5 E-value 3.7 Pos=-239] upp GZ59_12820 uracil phosphoribosyltransferase (terminator conf=100, tail_score=-5.78622) >PurR [nhmmer score 9.1 E-value 12.0 Pos=-197] - GZ59_12920 putative membrane protein tmcA GZ59_12930 tRNA(Met) cytidine acetyltransferase TmcA (terminator conf=100, tail_score=-4.2704) atoB GZ59_13080 acetyl-CoA acetyltransferase atoA GZ59_13090 acetate CoA-transferase beta subunit atoD GZ59_13100 acetate CoA-transferase alpha subunit - GZ59_13110 hypothetical protein - GZ59_13120 hypothetical protein citM_1 GZ59_13130 Mg(2+)/citrate complex transporter >DcuR [nhmmer score 13.5 E-value 0.54 Pos=-403] >CRP [nhmmer score 5.6 E-value 260.0 Pos=-165] >FNR [nhmmer score 8.3 E-value 32.0 Pos=-23] - GZ59_13140 LysR-family transcriptional regulator >ArcA [nhmmer score 10.8 E-value 4.2 Pos=-174] lipA GZ59_13240 lipoic acid synthetase (terminator conf=90, tail_score=-4.40237) >SlyA [nhmmer score 8.9 E-value 26.0 Pos=-160] dacA GZ59_13270 D-alanine carboxypeptidase (terminator conf=100, tail_score=-3.8637) >NtrC [nhmmer score 12.5 E-value 1.3 Pos=-301] >RpoN alternative sigma factor [nhmmer score 14.0 E-value 0.33 Pos=-403] gltI GZ59_13410 glutamate/aspartate periplasmic binding protein (terminator conf=100, tail_score=-5.40474) >RpoN alternative sigma factor [nhmmer score 8.1 E-value 31.0 Pos=-64] nagB GZ59_13590 glucosamine-6-phosphate isomerase nagA GZ59_13580 N-acetylglucosamine-6-phosphate deacetylase nagC GZ59_13570 N-acetylglucosamine repressor nagC GZ59_13570 N-acetylglucosamine repressor nagA GZ59_13580 N-acetylglucosamine-6-phosphate deacetylase nagB GZ59_13590 glucosamine-6-phosphate isomerase >CRP [nhmmer score 11.5 E-value 2.3 Pos=-202] >NagC [nhmmer score 13.3 E-value 0.84 Pos=-171] >ArcA [nhmmer score 10.1 E-value 6.8 Pos=-39] nagE GZ59_13600 PTS system, N-acetylglucosamine-specific IIABC component (terminator conf=100, tail_score=-5.98781) >ArcA [nhmmer score 11.3 E-value 2.9 Pos=-260] >OxyR [nhmmer score 9.0 E-value 20.0 Pos=-285] fur GZ59_13620 ferric uptake regulation protein (terminator conf=100, tail_score=-5.2015) >FNR [nhmmer score 8.5 E-value 27.0 Pos=-267] >KdgR [nhmmer score 11.2 E-value 3.9 Pos=-275] fldA GZ59_13640 flavodoxin 1 (terminator conf=87, tail_score=-2.50816) >FliA alternative sigma factor [nhmmer score 7.9 E-value 55.0 Pos=-170] - GZ59_13650 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.04356) - GZ59_13700 putative membrane protein kdpE GZ59_13710 two-component response regulator of kdp operon kdpD GZ59_13720 Osmosensitive K channel His kinase sensor kdpC GZ59_13730 potassium-transporting ATPase, C subunit kdpB GZ59_13740 potassium-transporting ATPase B chain kdpA GZ59_13750 potassium-transporting ATPase A chain >HexR [nhmmer score 8.5 E-value 39.0 Pos=-175] >CRP [nhmmer score 5.9 E-value 210.0 Pos=-84] ybfA GZ59_13760 putative DUF2517 family protein (terminator conf=100, tail_score=-5.26119) >RpoN alternative sigma factor [nhmmer score 9.0 E-value 16.0 Pos=-112] - GZ59_13830 putative allophanate hydrolase subunit 1 - GZ59_13840 putative allophanate hydrolase subunit 2 - GZ59_13850 putative lactam utilization protein pcp_1 GZ59_13860 pyrrolidone-carboxylate peptidase (terminator conf=78, tail_score=-4.08945) (terminator conf=100, tail_score=-5.27335) gltA GZ59_13880 citrate synthase >OxyR [nhmmer score 6.9 E-value 110.0 Pos=-449] >CRP [nhmmer score 9.2 E-value 15.0 Pos=-277] >FNR [nhmmer score 7.7 E-value 49.0 Pos=-276] sdhC GZ59_13890 succinate dehydrogenase cytochrome b-556 subunit sdhD GZ59_13900 succinate dehydrogenase hydrophobic membrane anchor protein sdhA GZ59_13910 succinate dehydrogenase flavoprotein subunit sdhB GZ59_13920 succinate dehydrogenase iron-sulfur protein (terminator conf=90, tail_score=-3.33815) >FNR [nhmmer score 12.7 E-value 0.94 Pos=-401] cydA1 GZ59_13970 cytochrome D ubiquinol oxidase subunit I cydB1 GZ59_13980 cytochrome D ubiquinol oxidase subunit II - GZ59_13990 putative membrane protein - GZ59_14000 putative membrane protein (terminator conf=93, tail_score=-4.54449) - GZ59_14130 hypothetical protein >NadR [nhmmer score 10.1 E-value 9.6 Pos=-20] nadA GZ59_14140 quinolinate synthetase A pnuC GZ59_14150 nicotinamide mononucleotide transport protein >ModE [nhmmer score 15.9 E-value 0.12 Pos=-43] modA GZ59_14290 molybdate-binding periplasmic protein modB GZ59_14300 molybdenum transport system permease protein modC GZ59_14310 molybdenum transport ATP-binding protein (terminator conf=79, tail_score=-5.46706) >CRP [nhmmer score 10.5 E-value 5.3 Pos=-174] >GalR [nhmmer score 12.4 E-value 1.0 Pos=-58] - GZ59_14320 sugar phosphate isomerase/epimerase (terminator conf=90, tail_score=-3.38329) - GZ59_14330 LacI-family transcriptional regulator - GZ59_14340 putative oxidoreductase - GZ59_14350 xylose isomerase-like TIM barrel domain protein - GZ59_14360 putative nucleoside H+ symporter >GalR [nhmmer score 12.6 E-value 0.9 Pos=-171], [nhmmer score 13.6 E-value 0.41 Pos=-141] glk GZ59_14370 glucokinase >NarP [nhmmer score 9.3 E-value 19.0 Pos=-124] fdnG GZ59_14450 formate dehydrogenase, nitrate-inducible, major subunit fdnH GZ59_14440 formate dehydrogenase, nitrate-inducible, iron-sulfur subunit fdnI GZ59_14430 formate dehydrogenase, nitrate-inducible, cytochrome b556 (terminator conf=100, tail_score=-5.30616) >Fur [nhmmer score 10.5 E-value 9.0 Pos=-164] wecA2 GZ59_14550 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase wza GZ59_14560 putative polysaccharide export protein wzb GZ59_14570 putative protein-tyrosine-phosphatase wzc GZ59_14580 tyrosine-protein kinase >PmrA [nhmmer score 10.9 E-value 5.5 Pos=-33] rfbN GZ59_14760 O antigen biosynthesis rhamnosyltransferase rfbn rfbM GZ59_14770 mannose-1-phosphate guanylyltransferase rfbK GZ59_14780 phosphomannomutase (terminator conf=82, tail_score=-3.91084) >FliA alternative sigma factor [nhmmer score 8.2 E-value 42.0 Pos=-263] yjbE GZ59_14840 extracellular polysaccharide biosynthesis protein (terminator conf=93, tail_score=-4.96501) >CRP [nhmmer score 9.2 E-value 15.0 Pos=-237] bglY GZ59_14900 beta-glucosidase bglK GZ59_14910 putative beta-glucoside operon antiterminator - GZ59_14930 Antibiotic biosynthesis monooxygenase - GZ59_14940 putative transcriptional regulator >ArcA [nhmmer score 8.0 E-value 36.0 Pos=-99] iolA GZ59_14950 Methylmalonate semialdehyde dehydrogenase [acylating] (terminator conf=100, tail_score=-5.41746) fbpA GZ59_15080 Ferric iron ABC transporter, substrate binding protein >Rob [nhmmer score 12.0 E-value 2.0 Pos=-241] - GZ59_15090 diguanylate cyclase with GAF sensor >SlyA [nhmmer score 8.3 E-value 42.0 Pos=-94] >Fur [nhmmer score 10.4 E-value 9.7 Pos=-109] - GZ59_15240 non-ribosomal peptide synthetase - GZ59_15230 non-ribosomal peptide synthetase - GZ59_15220 ABC transporter ATP-binding protein (terminator conf=100, tail_score=-4.74103) >CRP [nhmmer score 5.9 E-value 210.0 Pos=-151] lacZ GZ59_15280 Beta-galactosidase lacY GZ59_15270 lactose permease - GZ59_15260 - (terminator conf=100, tail_score=-4.77757) >FNR [nhmmer score 7.7 E-value 50.0 Pos=-138] pnl GZ59_15370 pectin lyase (terminator conf=76, tail_score=-4.46514) >CpxR [nhmmer score 10.6 E-value 8.2 Pos=-163] >CRP [nhmmer score 6.3 E-value 150.0 Pos=-201] >RpoE alternative sigma factor [nhmmer score 7.0 E-value 95.0 Pos=-208] >FNR [nhmmer score 6.5 E-value 130.0 Pos=-383] >DcuR [nhmmer score 17.0 E-value 0.037 Pos=-486], [nhmmer score 14.1 E-value 0.36 Pos=-515] - GZ59_15410 sodium:dicarboxylate symporter (terminator conf=100, tail_score=-5.50499) >RpoN alternative sigma factor [nhmmer score 10.1 E-value 6.3 Pos=-243] >Fur [nhmmer score 9.2 E-value 24.0 Pos=-42], [nhmmer score 11.3 E-value 4.7 Pos=-36] fetM GZ59_15460 high affinity Fe2+ permease fetP GZ59_15470 Ferrous iron transport protein (terminator conf=100, tail_score=-4.57209) - GZ59_15610 putative glycerol dehydrogenase ssuC2 GZ59_15620 putative sulfonate ABC transporter, permease protein ssuB2 GZ59_15630 putative sulfonate ABC transporter, ATP-binding protein ssuA2 GZ59_15640 putative sulfonate ABC transporter, periplasmic binding protein >CpxR [nhmmer score 7.1 E-value 130.0 Pos=-297] >Rob [nhmmer score 10.7 E-value 5.4 Pos=-286] - GZ59_15650 putative malate/L-lactate dehydrogenase tauA GZ59_15660 putative taurine ABC transporter, periplasmic substrate binding protein tauC GZ59_15670 putative taurine ABC transporter, permease protein tauB GZ59_15680 putative taurine ABC transporter, ATP-binding protein - GZ59_15690 putative desulfhydrase - GZ59_15700 Asp/Glu/Hydantoin racemase family protein (terminator conf=79, tail_score=-4.59773) >FNR [nhmmer score 9.9 E-value 8.7 Pos=-248] >DcuR [nhmmer score 15.9 E-value 0.086 Pos=-356] >Rob [nhmmer score 10.5 E-value 6.0 Pos=-359] >GlpR [nhmmer score 9.1 E-value 19.0 Pos=-476] dcuB GZ59_15710 anaerobic C4-dicarboxylate transporter (terminator conf=100, tail_score=-5.26316) >CpxR [nhmmer score 10.3 E-value 10.0 Pos=-73] >Fur [nhmmer score 13.9 E-value 0.65 Pos=-105] hasR GZ59_15760 TonB-dependent heme receptor hasA GZ59_15750 extracellular heme-binding protein (terminator conf=89, tail_score=-3.64703) - GZ59_15770 FecR-like transmembrane sensor - GZ59_15780 FecI-like sigma factor >Fur [nhmmer score 11.5 E-value 4.1 Pos=-128] - GZ59_15790 hypothetical protein prr GZ59_15800 Gamma-aminobutyraldehyde dehydrogenase >RpoN alternative sigma factor [nhmmer score 10.6 E-value 4.3 Pos=-68] patA GZ59_15810 putrescine aminotransferase (terminator conf=100, tail_score=-5.00616) >FliA alternative sigma factor [nhmmer score 11.3 E-value 4.2 Pos=-301] cheV GZ59_16050 chemotaxis protein CheV (terminator conf=100, tail_score=-5.60864) >Fur [nhmmer score 8.5 E-value 44.0 Pos=-153] - GZ59_16410 hypothetical protein (terminator conf=89, tail_score=-5.65927) - GZ59_16470 hypothetical protein - GZ59_16480 hypothetical protein >FNR [nhmmer score 6.9 E-value 96.0 Pos=-67] - GZ59_16490 hypothetical protein - GZ59_16500 hypothetical protein >Fur [nhmmer score 10.0 E-value 13.0 Pos=-142] - GZ59_16530 ankyrin repeat domain protein (terminator conf=100, tail_score=-4.41548) (terminator conf=93, tail_score=-3.51948) - GZ59_16580 histone family protein nucleoid-structuring protein H-NS >Fur [nhmmer score 8.8 E-value 34.0 Pos=-153] - GZ59_16600 putative type IV pilin protein precursor (terminator conf=100, tail_score=-5.95286) >KdgR [nhmmer score 9.3 E-value 17.0 Pos=-500] >SlyA [nhmmer score 9.4 E-value 18.0 Pos=-169] - GZ59_16630 bacteriocin killing protein - GZ59_16640 bacteriocin immunity protein >FNR [nhmmer score 6.9 E-value 94.0 Pos=-424], [nhmmer score 8.3 E-value 31.0 Pos=-152] >Fur [nhmmer score 14.6 E-value 0.35 Pos=-342] >NarP [nhmmer score 8.4 E-value 39.0 Pos=-278] - GZ59_16680 hypothetical protein - GZ59_16690 hypothetical protein intB GZ59_16700 integrase >FNR [nhmmer score 8.7 E-value 22.0 Pos=-508] nac_1 GZ59_16720 - >RpoN alternative sigma factor [nhmmer score 15.1 E-value 0.14 Pos=-54] nac_1 GZ59_16720 - (terminator conf=100, tail_score=-5.56112) - GZ59_16710 - >NarP [nhmmer score 7.3 E-value 92.0 Pos=-33] nac_1 GZ59_16720 - >CRP [nhmmer score 6.6 E-value 120.0 Pos=-295] >KdgR [nhmmer score 9.8 E-value 11.0 Pos=-229] iraP GZ59_16730 sigma S stabilising anti-RssB factor (terminator conf=100, tail_score=-4.30933) - GZ59_16770 hypothetical protein >NtrC [nhmmer score 7.6 E-value 59.0 Pos=-515] >ArcA [nhmmer score 8.6 E-value 22.0 Pos=-272] expA GZ59_16780 two-component response regulator uvrC GZ59_16790 excinuclease ABC subunit C pgsA GZ59_16800 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase - GZ59_16810 - - GZ59_16820 - - GZ59_16830 - (terminator conf=100, tail_score=-5.47218) >RcsB [nhmmer score 7.6 E-value 62.0 Pos=-91] yqaE GZ59_17150 membrane protein YqaE (terminator conf=100, tail_score=-5.0133) (terminator conf=100, tail_score=-4.89521) - GZ59_17210 hypothetical protein moeB GZ59_17220 molybdopterin biosynthesis protein moeA GZ59_17230 molybdopterin biosynthesis protein >ArcA [nhmmer score 12.1 E-value 1.5 Pos=-158] - GZ59_17240 putative ABC transporter ATP-binding protein - GZ59_17250 putative ABC transporter periplasmic binding protein - GZ59_17260 putative ABC transporter permease protein - GZ59_17270 putative ABC transporter permease protein >CRP [nhmmer score 7.5 E-value 57.0 Pos=-81] cdd GZ59_17290 cytidine deaminase bioA GZ59_17330 adenosylmethionine-8-amino-7-oxononanoate aminotransferase >BirA [nhmmer score 8.4 E-value 10.0 Pos=-85] bioB GZ59_17340 biotin synthase bioF GZ59_17350 8-amino-7-oxononanoate synthase bioC GZ59_17360 biotin synthesis protein bioD GZ59_17370 dethiobiotin synthetase (terminator conf=77, tail_score=-5.01732) >LexA [nhmmer score 12.6 E-value 1.4 Pos=-232] uvrB GZ59_17380 excision nuclease ABC subunit B - GZ59_17390 putative glyoxalase/bleomycin resistance protein/dioxygenase - GZ59_17400 hypothetical protein >ModE [nhmmer score 17.3 E-value 0.04 Pos=-222] moaA GZ59_17420 molybdenum cofactor biosynthesis protein A moaB GZ59_17430 molybdenum cofactor biosynthesis protein B moaC GZ59_17440 molybdenum cofactor biosynthesis protein C moaD GZ59_17450 molybdopterin converting factor subunit 1 moaE GZ59_17460 molybdopterin converting factor subunit 2 - GZ59_17470 putative membrane protein (terminator conf=100, tail_score=-5.76633) >CpxR [nhmmer score 8.7 E-value 35.0 Pos=-371] >Rob [nhmmer score 13.6 E-value 0.57 Pos=-259] >Fur [nhmmer score 10.2 E-value 12.0 Pos=-249] acr GZ59_17480 TonB-dependent ferric achromobactin receptor cbrA GZ59_17490 achromobactin-binding periplasmic protein cbrB GZ59_17500 achromobactin transport system permease protein CbrB cbrC GZ59_17510 achromobactin transport system permease protein CbrC cbrD GZ59_17520 achromobactin transport ATP-binding protein >MetJ [nhmmer score 15.6 E-value 0.096 Pos=-90] mmuP GZ59_17600 putative S-methylmethionine permease mmuM GZ59_17610 homocysteine S-methyltransferase - GZ59_17620 hypothetical protein (terminator conf=100, tail_score=-5.55664) >Rob [nhmmer score 13.7 E-value 0.53 Pos=-353] >Fur [nhmmer score 9.3 E-value 23.0 Pos=-297] prtW GZ59_17740 metalloprotease (terminator conf=100, tail_score=-4.74285) (terminator conf=91, tail_score=-4.81685) dps GZ59_17910 DNA protection during starvation protein >Rob [nhmmer score 12.4 E-value 1.5 Pos=-100] >FNR [nhmmer score 8.8 E-value 20.0 Pos=-94] >Fur [nhmmer score 8.9 E-value 31.0 Pos=-93], [nhmmer score 8.9 E-value 32.0 Pos=-66] - GZ59_17920 hypothetical protein rhtA GZ59_17930 Threonine/homoserine exporter >RcsB [nhmmer score 8.1 E-value 44.0 Pos=-219] >PhoB [nhmmer score 12.7 E-value 1.0 Pos=-177] ompX GZ59_17940 outer membrane protein (terminator conf=100, tail_score=-5.65177) >RpoE alternative sigma factor [nhmmer score 10.2 E-value 8.2 Pos=-187] ompX GZ59_17940 outer membrane protein (terminator conf=100, tail_score=-5.65177) - GZ59_17960 MATE efflux family protein >KdgR [nhmmer score 12.3 E-value 1.8 Pos=-245] - GZ59_17970 Rhodanese domain protein - GZ59_17980 hypothetical protein >LexA [nhmmer score 16.4 E-value 0.075 Pos=-147] - GZ59_18080 putative phage-related protein - GZ59_18070 phage-related protein sotA GZ59_18300 sugar efflux transporter >FruR [nhmmer score 11.0 E-value 2.6 Pos=-104], [nhmmer score 14.3 E-value 0.19 Pos=-37] fruB GZ59_18310 PTS system, fructose-specific IIa/Fpr component fruK GZ59_18320 1-phosphofructokinase fruA GZ59_18330 pts system, fructose-specific IIbc component (terminator conf=100, tail_score=-5.77988) - GZ59_18350 putative membrane protein >PhoP [nhmmer score 9.5 E-value 18.0 Pos=-47] rscR GZ59_18360 LysR-family transciptional regulator lysP GZ59_18370 lysine-specific permease (terminator conf=100, tail_score=-5.61689) >CRP [nhmmer score 6.5 E-value 130.0 Pos=-239] >FNR [nhmmer score 13.6 E-value 0.48 Pos=-238] >Fur [nhmmer score 12.5 E-value 1.9 Pos=-101] - GZ59_18380 exogenous ferric siderophore TonB-dependent receptor (terminator conf=100, tail_score=-2.87963) >Fur [nhmmer score 9.4 E-value 22.0 Pos=-222] hprA GZ59_18390 glycerate dehydrogenase >RpoE alternative sigma factor [nhmmer score 7.1 E-value 88.0 Pos=-142] - GZ59_18410 Putative ABC sugar transporter, ATP-binding protein - GZ59_18400 Putative ABC sugar transporter, permease protein >FliA alternative sigma factor [nhmmer score 11.8 E-value 2.7 Pos=-226] - GZ59_18480 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.72622) >CRP [nhmmer score 8.6 E-value 24.0 Pos=-126] - GZ59_18530 hypothetical protein - GZ59_18530 hypothetical protein >ArcA [nhmmer score 8.2 E-value 30.0 Pos=-404] ehpR GZ59_18550 putative phenazine antibiotic biosynthesis protein EhpR - GZ59_18560 putative phenazine antibiotic biosynthesis protein ehpA GZ59_18570 putative phenazine antibiotic biosynthesis protein EhpA ehpB GZ59_18580 putative phenazine antibiotic biosynthesis protein EhpB ehpC GZ59_18590 putative phenazine antibiotic biosynthesis protein EhpC - GZ59_18600 hypothetical protein ehpD GZ59_18610 putative phenazine antibiotic biosynthesis protein EhpD ehpE GZ59_18620 putative phenazine antibiotic biosynthesis protein EhpE ehpF GZ59_18630 putative phenazine antibiotic biosynthesis protein EhpF ehpG GZ59_18640 putative phenazine antibiotic biosynthesis protein EhpG - GZ59_18650 putative malonyl CoA-acyl carrier protein transacylase - GZ59_18660 putative polyketide synthetase - GZ59_18670 hypothetical protein - GZ59_18680 putative flavin-containing amine oxidase - GZ59_18690 putative exported protein (terminator conf=93, tail_score=-3.14878) >NsrR [nhmmer score 9.1 E-value 15.0 Pos=-43] ehpR GZ59_18550 putative phenazine antibiotic biosynthesis protein EhpR - GZ59_18560 putative phenazine antibiotic biosynthesis protein ehpA GZ59_18570 putative phenazine antibiotic biosynthesis protein EhpA ehpB GZ59_18580 putative phenazine antibiotic biosynthesis protein EhpB ehpC GZ59_18590 putative phenazine antibiotic biosynthesis protein EhpC - GZ59_18600 hypothetical protein ehpD GZ59_18610 putative phenazine antibiotic biosynthesis protein EhpD ehpE GZ59_18620 putative phenazine antibiotic biosynthesis protein EhpE ehpF GZ59_18630 putative phenazine antibiotic biosynthesis protein EhpF ehpG GZ59_18640 putative phenazine antibiotic biosynthesis protein EhpG - GZ59_18650 putative malonyl CoA-acyl carrier protein transacylase - GZ59_18660 putative polyketide synthetase - GZ59_18670 hypothetical protein - GZ59_18680 putative flavin-containing amine oxidase - GZ59_18690 putative exported protein (terminator conf=93, tail_score=-3.14878) >DeoR [nhmmer score 7.1 E-value 110.0 Pos=-80], [nhmmer score 10.7 E-value 6.5 Pos=-110] >CRP [nhmmer score 7.5 E-value 56.0 Pos=-114] deoC2 GZ59_18760 putative deoxyribose-phosphate aldolase deoR GZ59_18750 deoxyribose operon repressor >RpoE alternative sigma factor [nhmmer score 12.9 E-value 0.98 Pos=-37] >CpxR [nhmmer score 9.2 E-value 24.0 Pos=-70] rybB GZ59_18770 - >ArgR [nhmmer score 15.6 E-value 0.13 Pos=-101] artJ GZ59_18900 arginine-binding periplasmic protein 2 (terminator conf=76, tail_score=-5.31275) >NsrR [nhmmer score 15.1 E-value 0.15 Pos=-39] >FNR [nhmmer score 7.6 E-value 53.0 Pos=-119] hcp GZ59_18990 hybrid-cluster protein - GZ59_18980 ferredoxin >LexA [nhmmer score 9.4 E-value 17.0 Pos=-77] ftsK GZ59_19140 cell division protein (terminator conf=90, tail_score=-3.28712) >CpxR [nhmmer score 8.5 E-value 40.0 Pos=-157] lolA GZ59_19150 outer-membrane lipoproteins carrier protein rarA GZ59_19160 Replication-associated recombination protein A serS GZ59_19170 seryl-tRNA synthetase (terminator conf=100, tail_score=-5.50499) >Mlc [nhmmer score 10.9 E-value 6.3 Pos=-256] >FNR [nhmmer score 7.2 E-value 76.0 Pos=-237] - GZ59_19180 putative transport protein - GZ59_19190 LysR-family transcriptional regulator >NifA [nhmmer score 10.4 E-value 6.2 Pos=-104] - GZ59_19200 permease (terminator conf=100, tail_score=-3.35197) >CpxR [nhmmer score 7.7 E-value 80.0 Pos=-454] - GZ59_19620 hypothetical protein >CRP [nhmmer score 6.1 E-value 180.0 Pos=-81] >FNR [nhmmer score 7.0 E-value 85.0 Pos=-80] focA GZ59_19640 putative formate transporter pflB GZ59_19630 formate acetyltransferase (terminator conf=100, tail_score=-4.84359) >NarP [nhmmer score 6.2 E-value 220.0 Pos=-93] >CRP [nhmmer score 7.1 E-value 83.0 Pos=-163] - GZ59_19830 putative methyl-accepting chemotaxis protein >DcuR [nhmmer score 11.5 E-value 2.5 Pos=-240] tcp GZ59_19840 putative methyl-accepting chemotaxis citrate transducer (terminator conf=100, tail_score=-3.82665) citB GZ59_19850 two-component response regulator citA GZ59_19860 signal transduction histidine kinase regulating citrate/malate metabolism >NadR [nhmmer score 12.4 E-value 1.7 Pos=-259] >CRP [nhmmer score 8.5 E-value 27.0 Pos=-76] citW GZ59_19870 citrate/acetate antiporter - GZ59_19880 putative fumarylacetoacetate hydrolase citC GZ59_19890 [citrate [pro-3s]-lyase] ligase citD GZ59_19900 citrate lyase acyl carrier protein citE_2 GZ59_19910 citrate lyase, citryl-ACP lyase subunit beta citF GZ59_19920 citrate lyase alpha chain citX GZ59_19930 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase citG GZ59_19940 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase (terminator conf=100, tail_score=-4.2828) sbcB GZ59_20000 exodeoxyribonuclease I >FNR [nhmmer score 7.0 E-value 87.0 Pos=-184] >Fur [nhmmer score 9.3 E-value 24.0 Pos=-81] - GZ59_20010 putative iron ABC transporter, priplasmic binding protein - GZ59_20020 putative iron ABC transporter, permease component - GZ59_20030 putative iron ABC transporter permease component - GZ59_20040 putative iron ABC transporter, ATP-binding protein >PurR [nhmmer score 8.5 E-value 18.0 Pos=-125] pyrD GZ59_20270 dihydroorotate dehydrogenase >GlpR [nhmmer score 7.1 E-value 95.0 Pos=-74] - GZ59_20350 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.23292) >Rob [nhmmer score 12.0 E-value 2.1 Pos=-193] cutC GZ59_20490 copper homeostasis protein (terminator conf=100, tail_score=-5.40474) (terminator conf=76, tail_score=-5.06451) - GZ59_20510 hypothetical protein - GZ59_20520 hypothetical protein >LexA [nhmmer score 16.6 E-value 0.063 Pos=-331] >Fur [nhmmer score 11.9 E-value 3.1 Pos=-277] - GZ59_20540 SnoaL-like domain protein (terminator conf=87, tail_score=-4.57837) - GZ59_20570 putative membrane protein - GZ59_20580 hypothetical protein - GZ59_20590 Diguanylate phosphodiesterase >ArcA [nhmmer score 8.1 E-value 33.0 Pos=-245] aspS GZ59_20600 aspartyl-tRNA synthetase nudB GZ59_20610 DATP pyrophosphohydrolase (terminator conf=80, tail_score=-5.03747) >LexA [nhmmer score 11.0 E-value 4.6 Pos=-83] ruvA GZ59_20640 holliday junction DNA helicase ruvB GZ59_20650 Holliday junction DNA helicase RuvB (terminator conf=100, tail_score=-3.68351) - GZ59_20680 PTS system, lactose/cellobiose family IIC subunit >AscG [nhmmer score 12.6 E-value 0.67 Pos=-112] - GZ59_20690 LacI-family transcriptional regulator (terminator conf=100, tail_score=-5.67529) (terminator conf=100, tail_score=-5.61881) znuB GZ59_20700 high-affinity zinc uptake system membrane protein znuC GZ59_20710 high-affinity zinc uptake system ATP-binding protein >Zur [nhmmer score 21.5 E-value 0.0011 Pos=-52] znuA GZ59_20720 high-affinity zinc uptake system periplasmic substrate-binding protein - GZ59_20730 Peptidase M23 (terminator conf=91, tail_score=-4.61873) hexR GZ59_20760 transcriptional regulator, RpiR family >PhoB [nhmmer score 13.2 E-value 0.66 Pos=-103] >HexR [nhmmer score 13.8 E-value 0.69 Pos=-39] zwf GZ59_20770 glucose-6-phosphate 1-dehydrogenase eda GZ59_20780 Khg/KdpG aldolase (terminator conf=100, tail_score=-5.60993) (terminator conf=95, tail_score=-3.2827) purT GZ59_20790 phosphoribosylglycinamide formyltransferase 2 >PurR [nhmmer score 12.1 E-value 1.1 Pos=-156] ptrB GZ59_20800 protease II - GZ59_20810 hypothetical protein holE GZ59_20820 DNA polymerase III, theta subunit >Fur [nhmmer score 11.0 E-value 6.1 Pos=-153] >OxyR [nhmmer score 8.2 E-value 39.0 Pos=-95] >ArcA [nhmmer score 9.8 E-value 9.0 Pos=-83] ftnA GZ59_20830 ferritin (terminator conf=95, tail_score=-4.22377) (terminator conf=77, tail_score=-2.50994) - GZ59_21010 putative AraC-family transcriptional regulator - GZ59_21020 hypothetical protein >ArcA [nhmmer score 8.6 E-value 23.0 Pos=-329] fsr GZ59_21030 putative fosmidomycin exporter ogt_1 GZ59_21040 putative methylated DNA--protein-cysteine methyltransferase >Fur [nhmmer score 8.8 E-value 33.0 Pos=-45] purB GZ59_21130 adenylosuccinate lyase (terminator conf=100, tail_score=-4.431) >NsrR [nhmmer score 12.2 E-value 1.3 Pos=-122] yccM GZ59_21190 electron transport protein (terminator conf=100, tail_score=-5.69379) rdgA GZ59_21210 regulator of pectin lyase production >CRP [nhmmer score 8.7 E-value 23.0 Pos=-124] >FNR [nhmmer score 10.7 E-value 4.5 Pos=-123] - GZ59_21220 hypothetical protein >PhoP [nhmmer score 8.7 E-value 35.0 Pos=-377] - GZ59_21230 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor (terminator conf=91, tail_score=-4.61566) >PhoB [nhmmer score 9.9 E-value 8.3 Pos=-116] ugpB2 GZ59_21270 glycerol-3-phosphate-binding periplasmic protein precursor - GZ59_21280 putative glycerophosphoryl diester phosphodiesterase htpX GZ59_21290 heat shock protein (terminator conf=100, tail_score=-3.95071) >KdgR [nhmmer score 18.5 E-value 0.015 Pos=-181] >FliA alternative sigma factor [nhmmer score 11.1 E-value 4.9 Pos=-175] ogl GZ59_21300 oligogalacturonate lyase (terminator conf=95, tail_score=-4.2142) >FNR [nhmmer score 7.3 E-value 71.0 Pos=-44] kdgR GZ59_21310 pectin degradation repressor (terminator conf=100, tail_score=-5.26316) >NsrR [nhmmer score 17.0 E-value 0.035 Pos=-49] - GZ59_21420 hypothetical protein (terminator conf=100, tail_score=-4.66163) >LexA [nhmmer score 9.8 E-value 12.0 Pos=-37] - GZ59_21480 putative inner membrane protein - GZ59_21470 putative sodium:dicarboxylate symporter (terminator conf=100, tail_score=-6.02919) >CRP [nhmmer score 6.3 E-value 150.0 Pos=-125] >KdgR [nhmmer score 9.4 E-value 16.0 Pos=-156] >FNR [nhmmer score 6.9 E-value 94.0 Pos=-206] kdgM GZ59_21500 oligogalacturonate-specific porin >KdgR [nhmmer score 12.4 E-value 1.6 Pos=-64] pelW GZ59_21550 pectate disaccharide-lyase togM GZ59_21540 binding-protein-dependent oligogalacturonate transport system, inner membrane component TogM togN GZ59_21530 binding-protein-dependent oligogalacturonate transport system, inner membrane component TogN togA GZ59_21520 oligogalacturonate ABC transporter, ATP-binding component togB GZ59_21510 periplasmic pectic oligomers binding protein (terminator conf=100, tail_score=-5.01042) (terminator conf=100, tail_score=-5.63012) kduD GZ59_21560 2-keto-3-deoxygluconate oxidoreductase kduI1 GZ59_21570 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase >KdgR [nhmmer score 20.0 E-value 0.0046 Pos=-178] kdgF GZ59_21580 pectin degradation protein (terminator conf=100, tail_score=-3.82665) >Fur [nhmmer score 11.6 E-value 3.9 Pos=-56] yfeA GZ59_21650 periplasmic chelated iron-binding protein yfeB GZ59_21640 chelated iron transport system membrane protein YfeB yfeC GZ59_21630 chelated iron transport system membrane protein YfeC yfeD GZ59_21620 chelated iron transport system membrane protein YfeD >RpoN alternative sigma factor [nhmmer score 10.1 E-value 6.7 Pos=-483] >RpoE alternative sigma factor [nhmmer score 6.4 E-value 150.0 Pos=-370] cspC GZ59_21660 cold shock protein cspC (terminator conf=100, tail_score=-5.60689) >Fur [nhmmer score 12.2 E-value 2.4 Pos=-310] mntP GZ59_21690 putative manganese efflux pump MntP (terminator conf=91, tail_score=-5.29445) (terminator conf=100, tail_score=-5.7946) manZ GZ59_21710 PTS system, mannose-specific iid component manY GZ59_21720 PTS system, mannose-specific IIc component manX GZ59_21730 PTS system, mannose-specific IIab component >Mlc [nhmmer score 14.4 E-value 0.43 Pos=-386] >NagC [nhmmer score 12.3 E-value 1.8 Pos=-385] - GZ59_21740 putative membrane protein (terminator conf=100, tail_score=-4.17274) - GZ59_21940 putative lipoprotein >CRP [nhmmer score 6.3 E-value 150.0 Pos=-151] >ArcA [nhmmer score 12.9 E-value 0.8 Pos=-118] - GZ59_21950 Uncharacterized protein (terminator conf=100, tail_score=-4.28977) (terminator conf=81, tail_score=-2.65884) - GZ59_22000 DeoC/LacD family aldolase - GZ59_22010 AAA family ATPase - GZ59_22020 sugar phosphotransferase system permease subunit IIA - GZ59_22030 sugar phosphotransferase system permease subunit IIB - GZ59_22040 sugar phosphotransferase system permease subunit IIC - GZ59_22050 sugar phosphotransferase system permease subunit IIB - GZ59_22060 putative 6-phosphofructokinase isozyme II >CRP [nhmmer score 6.8 E-value 98.0 Pos=-419], [nhmmer score 12.0 E-value 1.6 Pos=-345], [nhmmer score 9.3 E-value 14.0 Pos=-223] dadA GZ59_22070 D-amino acid dehydrogenase small subunit (terminator conf=100, tail_score=-5.66229) gapA GZ59_22140 glyceraldehyde 3-phosphate dehydrogenase a >CRP [nhmmer score 12.5 E-value 1.1 Pos=-135] >ArcA [nhmmer score 11.0 E-value 3.6 Pos=-61] msrB GZ59_22150 peptide methionine sulfoxide reductase - GZ59_22160 hypothetical protein >FruR [nhmmer score 10.2 E-value 4.9 Pos=-87] - GZ59_22160 hypothetical protein >KdgR [nhmmer score 10.0 E-value 9.7 Pos=-225] >NarP [nhmmer score 8.5 E-value 35.0 Pos=-291] >CRP [nhmmer score 8.0 E-value 40.0 Pos=-317] >FruR [nhmmer score 9.7 E-value 7.2 Pos=-340] >Fur [nhmmer score 11.2 E-value 5.3 Pos=-371] adhE GZ59_22360 bifunctional acetaldehyde-CoA dehydrogenase and iron-dependent alcohol dehydrogenase and pyruvate-formate lyase deactivase (terminator conf=100, tail_score=-5.06414) >DcuR [nhmmer score 15.2 E-value 0.16 Pos=-349] oppA2 GZ59_22370 extracellular solute-binding protein family 5 oppA1 GZ59_22380 periplasmic oligopeptide-binding protein (terminator conf=100, tail_score=-4.42386) >Fur [nhmmer score 8.4 E-value 47.0 Pos=-373] >FNR [nhmmer score 7.7 E-value 50.0 Pos=-374] - GZ59_22530 putative phage-related protein - GZ59_22520 hypothetical protein - GZ59_22510 hypothetical protein - GZ59_22500 hypothetical protein (terminator conf=79, tail_score=-3.82083) (terminator conf=76, tail_score=-4.75309) - GZ59_22570 putative membrane protein >CRP [nhmmer score 6.5 E-value 130.0 Pos=-164] >FNR [nhmmer score 10.0 E-value 7.9 Pos=-163] >NarP [nhmmer score 11.4 E-value 3.6 Pos=-56] ompW GZ59_22580 outer membrane protein W (terminator conf=100, tail_score=-4.82901) >PhoP [nhmmer score 9.6 E-value 17.0 Pos=-323] - GZ59_22590 putative oligogalacturonate-specific porin (terminator conf=100, tail_score=-5.626) >TrpR [nhmmer score 16.1 E-value 0.1 Pos=-232] trpE GZ59_22650 anthranilate synthase component I trpG GZ59_22640 anthranilate synthase component II trpD GZ59_22630 anthranilate phosphoribosyltransferase trpC GZ59_22620 tryptophan biosynthesis protein trpB GZ59_22610 tryptophan synthase beta chain trpA GZ59_22600 tryptophan synthase alpha chain (terminator conf=100, tail_score=-3.58522) - GZ59_22750 hypothetical protein >SlyA [nhmmer score 8.1 E-value 50.0 Pos=-135] topA GZ59_22760 DNA topoisomerase I (terminator conf=100, tail_score=-5.67063) >Fur [nhmmer score 9.8 E-value 16.0 Pos=-488] cysB GZ59_22770 cys regulon transcriptional activator (terminator conf=100, tail_score=-4.96762) >NifA [nhmmer score 7.8 E-value 47.0 Pos=-58] rnfA GZ59_22860 electron transport complex protein RnfA rnfB GZ59_22850 electron transport complex protein RnfB - GZ59_22830 - rnfD GZ59_22820 electron transport complex protein RnfD rnfG GZ59_22810 electron transport complex protein RnfG rnfE GZ59_22800 electron transport complex protein RnfE nth GZ59_22790 endonuclease III (terminator conf=100, tail_score=-3.16921) araA GZ59_22870 L-arabinose isomerase araB GZ59_22880 L-ribulokinase >AraC [nhmmer score 12.9 E-value 0.72 Pos=-237], [nhmmer score 10.9 E-value 3.6 Pos=-162] >CRP [nhmmer score 6.4 E-value 140.0 Pos=-190] araF GZ59_22890 L-arabinose-binding periplasmic protein araG GZ59_22900 L-arabinose transport ATP-binding protein araH GZ59_22910 L-arabinose transport system permease protein araC GZ59_22920 arabinose operon regulatory protein - GZ59_22930 putative oxidoreductase (terminator conf=77, tail_score=-2.64313) >Mlc [nhmmer score 10.1 E-value 11.0 Pos=-152] mlc GZ59_23040 Rok-family transcriptional regulator - GZ59_23050 dethiobiotin synthetase (terminator conf=91, tail_score=-3.76224) >RpoN alternative sigma factor [nhmmer score 14.3 E-value 0.25 Pos=-64] >KdgR [nhmmer score 10.3 E-value 8.0 Pos=-118] - GZ59_23110 putative aminotransferase >CRP [nhmmer score 12.8 E-value 0.82 Pos=-132] gpgP GZ59_23130 Glucosyl-3-phosphoglycerate/mannosyl-3- phosphogly cerate phosphatase gpgS GZ59_23120 glucosyl-3-phosphoglycerate synthase (terminator conf=100, tail_score=-5.89947) >FliA alternative sigma factor [nhmmer score 9.9 E-value 12.0 Pos=-96] - GZ59_23400 methyl-accepting chemotaxis protein with Cache sensor domain (terminator conf=100, tail_score=-3.37493) >ArcA [nhmmer score 8.6 E-value 23.0 Pos=-175] - GZ59_23440 cytochrome b562 (terminator conf=100, tail_score=-5.88565) (terminator conf=100, tail_score=-5.56673) - GZ59_23560 extracellular solute-binding protein family 1 - GZ59_23570 putative oxidoreductase >RhaS [nhmmer score 29.4 E-value 3.2e-06 Pos=-343] ogt_2 GZ59_23580 methylated-DNA--protein-cysteine methyltransferase >FNR [nhmmer score 9.9 E-value 8.8 Pos=-37] fnr GZ59_23590 DNA-binding transcriptional dual regulator (terminator conf=100, tail_score=-3.55447) (terminator conf=83, tail_score=-5.32944) kdsA GZ59_23690 2-dehydro-3-deoxyphosphooctonate aldolase sirB1 GZ59_23700 putative regulator sirB2 GZ59_23710 putative membrane protein hemK GZ59_23720 protein methyltransferase prfA GZ59_23730 peptide chain release factor RF-1 hemA GZ59_23740 glutamyl-tRNA reductase >FNR [nhmmer score 10.3 E-value 6.6 Pos=-113] lolB GZ59_23750 outer-membrane lipoprotein ispE GZ59_23760 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (terminator conf=100, tail_score=-3.39895) (terminator conf=100, tail_score=-5.8096) - GZ59_23780 putative membrane protein >ArcA [nhmmer score 8.8 E-value 19.0 Pos=-118] pth GZ59_23790 peptidyl-tRNA hydrolase - GZ59_23800 hypothetical protein (terminator conf=100, tail_score=-4.70319) (terminator conf=100, tail_score=-5.64274) ascB GZ59_23980 6-phospho-beta-glucosidase ascF GZ59_23990 PTS system, arbutin-, cellobiose-, and salicin-specific IIabc component >AscG [nhmmer score 11.5 E-value 1.5 Pos=-202] >CRP [nhmmer score 6.3 E-value 150.0 Pos=-130] ascG GZ59_24000 asc operon repressor (terminator conf=86, tail_score=-4.12198) (terminator conf=95, tail_score=-4.8083) - GZ59_24020 hypothetical protein - GZ59_24030 hypothetical protein - GZ59_24040 putative luciferase-like monooxygenase >Fur [nhmmer score 10.0 E-value 13.0 Pos=-168] - GZ59_24050 putative metal-dependent peptidase >CRP [nhmmer score 7.1 E-value 79.0 Pos=-318] - GZ59_24140 TM2 domain protein >RpoN alternative sigma factor [nhmmer score 12.2 E-value 1.3 Pos=-64] ucaB GZ59_24230 allophanate hydrolase ucaA GZ59_24220 urea carboxylase - GZ59_24210 transcriptional regulator for urea utilization, GntR-family urtA GZ59_24200 urea ABC transporter, periplasmic urea binding protein (terminator conf=81, tail_score=-3.15985) >KdgR [nhmmer score 11.5 E-value 3.0 Pos=-349] - GZ59_24260 KdgM-like oligalacturonate-specific porin - GZ59_24270 KdgM-like porin (terminator conf=80, tail_score=-3.37612) >HrpL alternative sigma factor [nhmmer score 13.3 E-value 0.83 Pos=-66] dspE GZ59_24870 type III secretion system effector protein dspF GZ59_24860 DspE-specific secretory chaperone >HrpL alternative sigma factor [nhmmer score 15.6 E-value 0.15 Pos=-87] hrpW GZ59_24880 HrpW harpin shcW GZ59_24890 putative HrpW-specific chaperone (terminator conf=76, tail_score=-4.23104) >FNR [nhmmer score 7.2 E-value 71.0 Pos=-99] >MetR [nhmmer score 10.8 E-value 5.8 Pos=-414] - GZ59_24960 VgrG protein - GZ59_24950 uncharacterized protein - GZ59_24940 hypothetical protein - GZ59_24930 putative lipoprotein - GZ59_24920 putative lipoprotein - GZ59_24910 putative lipoprotein - GZ59_24900 hypothetical protein (terminator conf=89, tail_score=-4.72846) >HrpL alternative sigma factor [nhmmer score 13.2 E-value 0.92 Pos=-111] hrpN GZ59_24970 harpin (terminator conf=88, tail_score=-4.58786) >HrpL alternative sigma factor [nhmmer score 17.3 E-value 0.041 Pos=-91] hrpF GZ59_25020 type III secretion protein HrpF hrpG GZ59_25010 type III secretion protein HrpG hrcC GZ59_25000 type III secretion protein HrcC hrpT GZ59_24990 type III secretion lipoprotein hrpV GZ59_24980 type III secretion protein HrpV hrpN GZ59_24970 harpin (terminator conf=88, tail_score=-4.58786) >HrpL alternative sigma factor [nhmmer score 13.8 E-value 0.58 Pos=-106] hrpA GZ59_25070 type III secretion protein, hrp pilus subunit (terminator conf=100, tail_score=-4.96501) >RpoN alternative sigma factor [nhmmer score 9.6 E-value 9.2 Pos=-67] hrpL GZ59_25120 RNA polymerase sigma subunit, ECF subfamily hrpL GZ59_25120 RNA polymerase sigma subunit, ECF subfamily >Fur [nhmmer score 8.3 E-value 49.0 Pos=-266] >HrpS [nhmmer score 15.4 E-value 0.11 Pos=-174] hrpJ GZ59_25130 type III secretion regulator YopN/LcrE/InvE/MxiC hrcV GZ59_25140 type III secretion protein hrpQ GZ59_25150 type III secretion protein hrcN GZ59_25160 type III secretion protein HrcN hrpO GZ59_25170 type III secretion protein HrpO hrpP GZ59_25180 type III secretion protein HrpP hrcQ GZ59_25190 type III secretion protein HrcQ hrcR GZ59_25200 type III secretion protein HrcR hrcS GZ59_25210 type III secretion protein HrcS hrcT GZ59_25220 type III secretion protein HrcT hrcU GZ59_25230 type III secretion protein HrcU >HrpL alternative sigma factor [nhmmer score 12.8 E-value 1.2 Pos=-93] hrpJ GZ59_25130 type III secretion regulator YopN/LcrE/InvE/MxiC hrcV GZ59_25140 type III secretion protein hrpQ GZ59_25150 type III secretion protein hrcN GZ59_25160 type III secretion protein HrcN hrpO GZ59_25170 type III secretion protein HrpO hrpP GZ59_25180 type III secretion protein HrpP hrcQ GZ59_25190 type III secretion protein HrcQ hrcR GZ59_25200 type III secretion protein HrcR hrcS GZ59_25210 type III secretion protein HrcS hrcT GZ59_25220 type III secretion protein HrcT hrcU GZ59_25230 type III secretion protein HrcU >NtrC [nhmmer score 8.5 E-value 30.0 Pos=-295] - GZ59_25270 putative oxidoreductase - GZ59_25280 flavodoxin - GZ59_25290 putative cytochrome P450 >RpoN alternative sigma factor [nhmmer score 11.3 E-value 2.5 Pos=-143] - GZ59_25320 putative permease (terminator conf=100, tail_score=-3.42346) - GZ59_25350 N-acylamino acid racemase - GZ59_25360 ABC transporter permease protein - GZ59_25370 ABC transporter ATP-binding protein >FNR [nhmmer score 8.0 E-value 38.0 Pos=-311] >CRP [nhmmer score 6.9 E-value 95.0 Pos=-107] - GZ59_25380 putative phosphatase (terminator conf=82, tail_score=-2.79501) >PurR [nhmmer score 8.4 E-value 19.0 Pos=-168] - GZ59_25420 putative short-chain dehydrogenase - GZ59_25410 putative phosphotransferase - GZ59_25400 aminotransferase class-III >RpoN alternative sigma factor [nhmmer score 12.5 E-value 1.0 Pos=-147] - GZ59_25450 ABC transporter, periplasmic binding protein - GZ59_25440 ABC transporter, permease protein - GZ59_25430 ABC transporter, ATPase (terminator conf=100, tail_score=-3.54543) >NtrC [nhmmer score 7.3 E-value 75.0 Pos=-165] >RpoN alternative sigma factor [nhmmer score 11.7 E-value 1.9 Pos=-59] - GZ59_25490 polyamine ABC transporter, ATP-binding protein - GZ59_25500 Putative amino acid exporter - GZ59_25590 putative DNA-binding protein >PhoP [nhmmer score 9.0 E-value 25.0 Pos=-83] - GZ59_25600 catabolic threonine dehydratase - GZ59_25610 Ornithine cyclodeaminase - GZ59_25620 hypothetical protein (terminator conf=80, tail_score=-3.35029) >FNR [nhmmer score 6.7 E-value 110.0 Pos=-146] >NarP [nhmmer score 6.9 E-value 130.0 Pos=-295] narG GZ59_25690 nitrate reductase, alpha subunit narH GZ59_25680 respiratory nitrate reductase 1 beta chain narJ GZ59_25670 respiratory nitrate reductase 1 delta chain narI GZ59_25660 respiratory nitrate reductase 1 gamma chain (terminator conf=100, tail_score=-4.79053) (terminator conf=100, tail_score=-4.11484) narK GZ59_25700 nitrite extrusion protein >FNR [nhmmer score 7.5 E-value 56.0 Pos=-208] >NarP [nhmmer score 7.2 E-value 97.0 Pos=-154], [nhmmer score 7.1 E-value 110.0 Pos=-43] narX GZ59_25710 nitrate/nitrite sensor protein NarX narL GZ59_25720 nitrate/nitrite response regulator >GalR [nhmmer score 10.4 E-value 4.9 Pos=-130] - GZ59_25730 acyltransferase 3 >RpoE alternative sigma factor [nhmmer score 6.1 E-value 190.0 Pos=-119] >ScrR [nhmmer score 12.5 E-value 0.73 Pos=-35] - GZ59_25740 putative exported protein >CRP [nhmmer score 8.6 E-value 24.0 Pos=-161] chaC GZ59_25750 putative cation transport protein >Fur [nhmmer score 9.4 E-value 22.0 Pos=-67] - GZ59_25760 putative siderophore-interacting protein >CpxR [nhmmer score 8.8 E-value 32.0 Pos=-246] chaA GZ59_25770 putative calcium/proton antiporter dauA GZ59_25790 C4-dicarboxylic acid transporter folM GZ59_25800 Dihydromonapterin reductase >RpoE alternative sigma factor [nhmmer score 6.2 E-value 180.0 Pos=-272] - GZ59_25890 Diguanylate cyclase/phosphodiesterase with GAF sensor - GZ59_25900 putative protease >CpxR [nhmmer score 8.5 E-value 40.0 Pos=-155] >FliA alternative sigma factor [nhmmer score 8.2 E-value 44.0 Pos=-110] aer1 GZ59_25960 aerotaxis receptor ldhA GZ59_25970 D-lactate dehydrogenase - GZ59_25980 putative lipoprotein >OxyR [nhmmer score 7.9 E-value 49.0 Pos=-304] - GZ59_25990 hypothetical protein >FNR [nhmmer score 8.0 E-value 40.0 Pos=-54] fnrS GZ59_26040 - (terminator conf=100, tail_score=-5.96219) >RpoN alternative sigma factor [nhmmer score 13.0 E-value 0.69 Pos=-114] pspA GZ59_26160 phage shock protein A pspB GZ59_26150 phage shock protein B pspC GZ59_26140 phage shock protein C (terminator conf=79, tail_score=-5.24531) (terminator conf=79, tail_score=-5.24531) pspC GZ59_26140 phage shock protein C pspB GZ59_26150 phage shock protein B pspA GZ59_26160 phage shock protein A >PspF [nhmmer score 11.9 E-value 1.9 Pos=-115], [nhmmer score 10.9 E-value 4.1 Pos=-48] pspF GZ59_26170 psp operon transcriptional activator >Fur [nhmmer score 10.3 E-value 11.0 Pos=-59] ryhB GZ59_26190 - celV GZ59_26180 endoglucanase V (terminator conf=100, tail_score=-4.86731) >SlyA [nhmmer score 8.9 E-value 25.0 Pos=-71] - GZ59_26280 hypothetical protein (terminator conf=84, tail_score=-4.33956) >Rob [nhmmer score 10.7 E-value 5.3 Pos=-84] >CpxR [nhmmer score 7.3 E-value 110.0 Pos=-151] - GZ59_26300 putative NADH:flavin oxidoreductase (terminator conf=93, tail_score=-4.12942) (terminator conf=79, tail_score=-3.96624) lfaT GZ59_26320 hexuronate transporter >UxuR [nhmmer score 15.5 E-value 0.11 Pos=-177] >LfaR [nhmmer score 13.3 E-value 0.98 Pos=-118], [nhmmer score 10.3 E-value 9.6 Pos=-40] lfaR GZ59_26330 transcriptional repressor araD GZ59_26390 L-ribulose-5-phosphate 4-epimerase >Rob [nhmmer score 13.3 E-value 0.74 Pos=-193] osmB GZ59_26400 osmotically inducible lipoprotein B (terminator conf=89, tail_score=-2.83894) >ArgR [nhmmer score 13.5 E-value 0.67 Pos=-51] >FNR [nhmmer score 8.4 E-value 28.0 Pos=-56] - GZ59_26490 hypothetical protein - GZ59_26480 hypothetical protein - GZ59_26470 glycerol kinase - GZ59_26460 putative xylose isomerase (terminator conf=77, tail_score=-3.48182) >ArgR [nhmmer score 18.0 E-value 0.021 Pos=-35], [nhmmer score 13.5 E-value 0.63 Pos=-53] - GZ59_26530 - - GZ59_26520 putative lipoprotein - GZ59_26510 ABC transporter related protein - GZ59_26500 putative sugar ABC transporter, permease protein - GZ59_26490 hypothetical protein - GZ59_26480 hypothetical protein - GZ59_26470 glycerol kinase - GZ59_26460 putative xylose isomerase (terminator conf=77, tail_score=-3.48182) >PhoP [nhmmer score 9.8 E-value 15.0 Pos=-108] acnA GZ59_26580 aconitate hydratase 1 (terminator conf=84, tail_score=-2.60508) (terminator conf=93, tail_score=-4.02856) - GZ59_26590 sodium:dicarboxylate symporter >ArcA [nhmmer score 7.9 E-value 39.0 Pos=-452] gst GZ59_26610 glutathione S-transferase (terminator conf=100, tail_score=-3.89354) >PurR [nhmmer score 8.9 E-value 13.0 Pos=-75] pdxY GZ59_26620 pyridoxamine kinase (terminator conf=100, tail_score=-3.74542) >FliA alternative sigma factor [nhmmer score 8.3 E-value 40.0 Pos=-257] slyB GZ59_26670 outer membrane lipoprotein SlyB pdxH GZ59_26640 pyridoxamine 5'-phosphate oxidase mliC GZ59_26650 Membrane-bound lysozyme inhibitor of C-type lysozyme anmK GZ59_26660 anhydro-N-acetylmuramic acid kinase >CpxR [nhmmer score 10.4 E-value 9.7 Pos=-118] >UxuR [nhmmer score 9.6 E-value 9.4 Pos=-71] slyB GZ59_26670 outer membrane lipoprotein SlyB (terminator conf=100, tail_score=-3.95378) - GZ59_26740 hypothetical protein >PurR [nhmmer score 6.5 E-value 91.0 Pos=-59] purR GZ59_26750 purine nucleotide synthesis repressor >FruR [nhmmer score 10.0 E-value 5.6 Pos=-116] lctP GZ59_26800 L-lactate permease ykgE GZ59_26810 putative L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE ykgF GZ59_26820 putative L-lactate dehydrogenase, Fe-S cluster-binding subunit YkgF ykgG GZ59_26830 putative L-lactate dehydrogenase >RpoN alternative sigma factor [nhmmer score 13.6 E-value 0.45 Pos=-227] - GZ59_26900 urea carboxylase-associated ABC transporter, periplasmic substrate-binding component - GZ59_26890 urea carboxylase-associated ABC transporter, permease component - GZ59_26880 urea carboxylase-associated ABC transporter, ATPase component - GZ59_26870 urea carboxylase-associated protein 2 - GZ59_26860 urea carboxylase-associated protein 1 - GZ59_26850 hypothetical protein - GZ59_26840 urea carboxylase (terminator conf=100, tail_score=-3.92592) >Fur [nhmmer score 8.9 E-value 30.0 Pos=-178] - GZ59_27000 short chain dehydrogenase - GZ59_27010 putative zinc-binding dehydrogenase narP GZ59_27040 nitrate/nitrite response regulator narQ GZ59_27050 nitrate/nitrite sensor protein >NarP [nhmmer score 8.2 E-value 43.0 Pos=-111] napF GZ59_27060 ferredoxin-type protein napD GZ59_27070 NapD family protein napA GZ59_27080 periplasmic nitrate reductase napG GZ59_27090 ferredoxin-type protein NapG napH GZ59_27100 ferredoxin-type protein NapH napB GZ59_27110 diheme cytochrome C protein napC GZ59_27120 cytochrome C-type protein (terminator conf=77, tail_score=-4.56775) >NarP [nhmmer score 7.8 E-value 59.0 Pos=-88] >FNR [nhmmer score 8.8 E-value 21.0 Pos=-111] ccmA GZ59_27210 heme exporter protein CcmA ccmB GZ59_27200 heme exporter protein B ccmC GZ59_27190 heme exporter protein C ccmD GZ59_27180 heme exporter protein D ccmE GZ59_27170 cytochrome C-type biogenesis protein ccmF GZ59_27160 cytochrome C-type biogenesis protein dsbE GZ59_27150 thiol:disulfide interchange protein ccmH1 GZ59_27140 cytochrome C-type biogenesis protein ccmH2 GZ59_27130 cytochrome C-type biogenesis protein (terminator conf=84, tail_score=-5.0916) >NsrR [nhmmer score 9.8 E-value 8.8 Pos=-141] >KdgR [nhmmer score 9.1 E-value 20.0 Pos=-150] >FNR [nhmmer score 9.2 E-value 15.0 Pos=-155] nrfA GZ59_27280 cytochrome c552 precursor nrfB GZ59_27270 cytochrome C-type protein nrfC GZ59_27260 nitrite reductase complex component NrfC nrfD GZ59_27250 nitrite reductase complex component NrfD nrfE GZ59_27240 cytochrome C-type biogenesis protein nrfF GZ59_27230 formate-dependent nitrite reductase complex subunit NrfF nrfG GZ59_27220 formate-dependent nitrite reductase complex subunit NrfG ccmA GZ59_27210 heme exporter protein CcmA ccmB GZ59_27200 heme exporter protein B ccmC GZ59_27190 heme exporter protein C ccmD GZ59_27180 heme exporter protein D ccmE GZ59_27170 cytochrome C-type biogenesis protein ccmF GZ59_27160 cytochrome C-type biogenesis protein dsbE GZ59_27150 thiol:disulfide interchange protein ccmH1 GZ59_27140 cytochrome C-type biogenesis protein ccmH2 GZ59_27130 cytochrome C-type biogenesis protein (terminator conf=84, tail_score=-5.0916) (terminator conf=100, tail_score=-6.35605) arbG GZ59_27340 beta-glucoside operon antiterminator >KdgR [nhmmer score 10.8 E-value 5.2 Pos=-260] >FruR [nhmmer score 9.7 E-value 7.0 Pos=-241] pykF GZ59_27360 pyruvate kinase I (terminator conf=100, tail_score=-5.84432) >FNR [nhmmer score 7.0 E-value 87.0 Pos=-166] ldtE GZ59_27380 putative L,D-transpeptidase (terminator conf=100, tail_score=-4.23892) (terminator conf=100, tail_score=-6.12458) sufE GZ59_27390 sulfur transfer protein sufS GZ59_27400 selenocysteine lyase sufD GZ59_27410 FeS assembly protein SufD sufC GZ59_27420 FeS assembly protein SufC sufB GZ59_27430 FeS assembly protein SufB sufA GZ59_27440 Fe-S cluster assembly protein >Rob [nhmmer score 10.7 E-value 5.4 Pos=-248] >SlyA [nhmmer score 8.6 E-value 32.0 Pos=-47] >Fur [nhmmer score 14.2 E-value 0.49 Pos=-38] - GZ59_27450 hypothetical protein >RcsB [nhmmer score 7.2 E-value 87.0 Pos=-151], [nhmmer score 7.1 E-value 96.0 Pos=-49] rprA GZ59_27490 - apbE GZ59_27500 thiamine biosynthesis lipoprotein ppsA GZ59_27510 phosphoenolpyruvate synthase >KdgR [nhmmer score 14.0 E-value 0.46 Pos=-95] psrP GZ59_27520 Phosphoenolpyruvate synthase regulatory protein (terminator conf=100, tail_score=-5.67967) - GZ59_27550 GntR-family transcriptional regulator >CRP [nhmmer score 7.6 E-value 56.0 Pos=-135] aglA2 GZ59_27560 PTS system, alpha-glucoside-specific IIBC component aglB2 GZ59_27570 6-phospho-alpha-glucosidase (terminator conf=86, tail_score=-4.02736) >Fur [nhmmer score 10.9 E-value 6.7 Pos=-60] hmuS GZ59_27580 Hemin-degrading family protein hmuT GZ59_27590 hemin-binding periplasmic protein hmuU GZ59_27600 hemin transport system permease protein hmuV GZ59_27610 hemin transport system ATP-binding protein (terminator conf=89, tail_score=-2.89039) gntT GZ59_27640 high-affinity gluconate transporter >CRP [nhmmer score 10.0 E-value 8.0 Pos=-115] gntV GZ59_27650 gluconokinase gntR_1 GZ59_27660 gluconate utilization system Gnt-I transcriptional repressor >CRP [nhmmer score 11.2 E-value 3.0 Pos=-414] edd GZ59_27670 phosphogluconate dehydratase >FruR [nhmmer score 9.0 E-value 12.0 Pos=-378] edd GZ59_27670 phosphogluconate dehydratase - GZ59_27690 ABC transporter related btuE GZ59_27700 putative vitamin B12 transport periplasmic protein - GZ59_27710 transport system permease protein - GZ59_27720 putative methyltransferase - GZ59_27730 Cupin domain protein related to quercetin dioxygenase >Fur [nhmmer score 10.8 E-value 7.1 Pos=-61] - GZ59_27740 putative Crp/Fnr-family of transcriptional regulator - GZ59_27750 hypothetical protein >NifA [nhmmer score 6.6 E-value 120.0 Pos=-230] >RcsB [nhmmer score 8.2 E-value 41.0 Pos=-258] umoD GZ59_27860 Glycine zipper 2TM domain protein (terminator conf=100, tail_score=-5.63103) >PdhR [nhmmer score 13.9 E-value 0.33 Pos=-138] >FNR [nhmmer score 14.9 E-value 0.17 Pos=-154] ndh GZ59_27870 NADH dehydrogenase (terminator conf=100, tail_score=-5.20333) >CRP [nhmmer score 7.9 E-value 43.0 Pos=-164] >Mlc [nhmmer score 14.1 E-value 0.55 Pos=-299] ptsG GZ59_27960 PTS system, glucose-specific IIBC component (terminator conf=100, tail_score=-5.39755) >LexA [nhmmer score 15.0 E-value 0.21 Pos=-37] dinI GZ59_28160 DNA-damage-inducible protein I - GZ59_28170 hypothetical protein (terminator conf=79, tail_score=-3.89814) >HexR [nhmmer score 10.6 E-value 7.8 Pos=-141] bssS GZ59_28180 biofilm regulator BssS (terminator conf=100, tail_score=-4.14874) >ArgR [nhmmer score 16.9 E-value 0.049 Pos=-140] - GZ59_28190 putative membrane protein - GZ59_28200 putative exported protein (terminator conf=95, tail_score=-4.66537) >FliA alternative sigma factor [nhmmer score 12.8 E-value 1.3 Pos=-455] - GZ59_28280 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.84381) (terminator conf=79, tail_score=-5.1675) - GZ59_28290 hypothetical protein - GZ59_28300 putative exported protein >NarP [nhmmer score 8.7 E-value 31.0 Pos=-81] - GZ59_28310 hypothetical protein - GZ59_28320 hypothetical protein (terminator conf=100, tail_score=-4.55798) - GZ59_28380 - >CpxR [nhmmer score 9.2 E-value 25.0 Pos=-89] yccA GZ59_28390 Modulator of FtsH protease, inner membrane protein (terminator conf=100, tail_score=-6.23209) - GZ59_28490 hypothetical protein >LexA [nhmmer score 15.5 E-value 0.15 Pos=-40] sulA GZ59_28500 cell division inhibitor (terminator conf=80, tail_score=-4.75356) >RcsB [nhmmer score 8.7 E-value 27.0 Pos=-358] ompA GZ59_28510 outer-membrane protein A (terminator conf=100, tail_score=-5.77632) >FadR [nhmmer score 6.5 E-value 130.0 Pos=-87] >FabR [nhmmer score 18.4 E-value 0.011 Pos=-55] fabA GZ59_28540 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (terminator conf=84, tail_score=-2.59526) (terminator conf=84, tail_score=-4.41047) betA GZ59_28560 choline dehydrogenase betB GZ59_28570 betaine aldehyde dehydrogenase betI GZ59_28580 TetR-family transcriptional regulator >BetI [nhmmer score 21.9 E-value 0.00088 Pos=-273] >Fur [nhmmer score 8.8 E-value 35.0 Pos=-257] betT GZ59_28590 high-affinity choline transport protein (terminator conf=100, tail_score=-4.77896) >KdgR [nhmmer score 11.0 E-value 4.8 Pos=-55] - GZ59_28600 Ribose/galactose isomerase (terminator conf=100, tail_score=-5.63504) >CRP [nhmmer score 6.2 E-value 160.0 Pos=-203] fliA GZ59_28640 RNA polymerase sigma factor for flagellar operon >FliA alternative sigma factor [nhmmer score 8.7 E-value 29.0 Pos=-97] fliC GZ59_28730 flagellin (terminator conf=100, tail_score=-5.67063) >FliA alternative sigma factor [nhmmer score 11.3 E-value 4.2 Pos=-68] fliD GZ59_28740 flagellar hook-associated protein 2 fliS GZ59_28750 flagellar protein FliS fliT GZ59_28760 flagellar protein FliT (terminator conf=89, tail_score=-4.61353) >PhoP [nhmmer score 8.8 E-value 32.0 Pos=-58] fliL GZ59_28840 flagellar protein FliL fliM GZ59_28850 flagellar motor switch protein FliM fliN GZ59_28860 flagellar motor switch protein FliN fliO GZ59_28870 flagellar protein FliO fliP GZ59_28880 flagellar biosynthetic protein FliP fliQ GZ59_28890 flagellar biosynthetic protein FliQ fliR GZ59_28900 flagellar biosynthetic protein FliR >FliA alternative sigma factor [nhmmer score 8.6 E-value 32.0 Pos=-118] flgK GZ59_28920 flagellar hook-associated protein 1 flgL GZ59_28910 flagellar hook-associated protein 3 (terminator conf=83, tail_score=-5.49234) >FliA alternative sigma factor [nhmmer score 15.1 E-value 0.23 Pos=-135] flgM GZ59_29030 negative regulator of flagellin synthesis flgN GZ59_29040 flagella synthesis protein (terminator conf=87, tail_score=-4.39386) >FliA alternative sigma factor [nhmmer score 17.6 E-value 0.035 Pos=-60] cheD GZ59_29120 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-4.0031) >RcsB [nhmmer score 7.8 E-value 55.0 Pos=-255] >CRP [nhmmer score 10.9 E-value 3.7 Pos=-341] flhD GZ59_29180 flagellar transcriptional activator FlhD flhC GZ59_29170 flagellar transcriptional activator FlhC motA GZ59_29160 chemotaxis protein MotA motB GZ59_29150 chemotaxis protein MotB cheA GZ59_29140 signal transduction histidine kinase CheA cheW GZ59_29130 chemotaxis protein cheD GZ59_29120 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-4.0031) - GZ59_29190 EamA-like transporter family protein >Rob [nhmmer score 12.1 E-value 1.9 Pos=-275] >CRP [nhmmer score 5.8 E-value 230.0 Pos=-217] trg GZ59_29200 methyl-accepting chemotaxis protein (terminator conf=86, tail_score=-3.25877) >FliA alternative sigma factor [nhmmer score 7.2 E-value 92.0 Pos=-187] trg GZ59_29200 methyl-accepting chemotaxis protein (terminator conf=86, tail_score=-3.25877) >NifA [nhmmer score 6.5 E-value 130.0 Pos=-134] nifB GZ59_29410 femo cofactor biosynthesis protein nifQ GZ59_29400 nitrogen fixation protein nifQ GZ59_29400 nitrogen fixation protein nifB GZ59_29410 femo cofactor biosynthesis protein nifA GZ59_29420 nif-specific regulatory protein nifL GZ59_29430 nitrogen fixation regulatory protein >NifA [nhmmer score 8.3 E-value 33.0 Pos=-353] nifF GZ59_29440 flavodoxin (terminator conf=100, tail_score=-5.27938) >RpoN alternative sigma factor [nhmmer score 15.4 E-value 0.11 Pos=-87] nifF GZ59_29440 flavodoxin (terminator conf=100, tail_score=-5.27938) >RpoN alternative sigma factor [nhmmer score 13.7 E-value 0.29 Pos=-102] >CRP [nhmmer score 10.5 E-value 5.4 Pos=-112] >NifA [nhmmer score 6.5 E-value 130.0 Pos=-203] nifU GZ59_29500 nitrogen fixation protein nifS GZ59_29490 cysteine desulfurase nifV GZ59_29480 homocitrate synthase nifW GZ59_29470 nitrogenase stabilizing/protective protein nifZ GZ59_29460 nitrogen fixation protein NifZ nifM GZ59_29450 nitrogen fixation protein NifM (terminator conf=100, tail_score=-4.09685) >RpoN alternative sigma factor [nhmmer score 13.2 E-value 0.44 Pos=-59] >NifA [nhmmer score 9.1 E-value 18.0 Pos=-109] nifE GZ59_29530 nitrogenase iron-molybdenum cofactor biosynthesis protein nifN GZ59_29520 nitrogenase iron-molybdenum cofactor biosynthesis protein nifX GZ59_29510 nitrogen fixation protein (terminator conf=100, tail_score=-5.93809) (terminator conf=90, tail_score=-4.82901) nifY GZ59_29560 nitrogen fixation protein nifT GZ59_29570 nitrogen fixation protein nifK GZ59_29580 nitrogenase molybdenum-iron protein beta chain nifD GZ59_29590 nitrogenase molybdenum-iron protein alpha chain nifH GZ59_29600 nitrogenase iron protein >NifA [nhmmer score 9.1 E-value 18.0 Pos=-248] nifJ GZ59_29610 pyruvate-flavodoxin oxidoreductase - GZ59_29620 sulfate transporter >RpoN alternative sigma factor [nhmmer score 6.6 E-value 95.0 Pos=-121] nifJ GZ59_29610 pyruvate-flavodoxin oxidoreductase - GZ59_29620 sulfate transporter >FliA alternative sigma factor [nhmmer score 9.0 E-value 24.0 Pos=-77] - GZ59_29620 sulfate transporter - GZ59_29760 MmgE/PrpD family dehydratase >KdgR [nhmmer score 9.3 E-value 17.0 Pos=-319] >PhoP [nhmmer score 11.7 E-value 3.3 Pos=-303] - GZ59_29770 ABC transporter permease protein - GZ59_29780 ABC transporter permease protein - GZ59_29790 ABC-transporter ATP-binding protein - GZ59_29800 putative branched-chain amino acid aminotransferase >LexA [nhmmer score 12.3 E-value 1.8 Pos=-45] - GZ59_29830 MutT-like protein >RpoN alternative sigma factor [nhmmer score 11.6 E-value 2.0 Pos=-193] >CRP [nhmmer score 6.2 E-value 170.0 Pos=-199] nasF GZ59_30010 nitrate-binding protein nasE GZ59_30000 nitrate ABC transporter, inner membrane subunit nasD GZ59_29990 nitrate transport protein nasB GZ59_29980 nitrite reductase (NAD(P)H), large subunit nasA GZ59_29970 nitrate reductase nirE GZ59_29960 uroporphyrin-III C-methyltransferase - GZ59_29950 hypothetical protein >RpoN alternative sigma factor [nhmmer score 9.9 E-value 7.3 Pos=-60] nasR GZ59_30020 nitrate-and nitrite-responsive transcription antiterminator (terminator conf=100, tail_score=-3.54543) >NarP [nhmmer score 6.8 E-value 130.0 Pos=-273] fdhE GZ59_30100 FdhE protein >ArcA [nhmmer score 9.5 E-value 11.0 Pos=-42] >Fur [nhmmer score 14.1 E-value 0.55 Pos=-52] hutW GZ59_30160 putative coproporphyrinogen oxidase hutX GZ59_30150 putative heme utilization carrier protein HutX hutY GZ59_30140 atypical short chain dehydrogenase - GZ59_30130 hypothetical protein >CRP [nhmmer score 12.8 E-value 0.86 Pos=-105], [nhmmer score 8.4 E-value 29.0 Pos=-48] - GZ59_30200 hypothetical protein (terminator conf=100, tail_score=-5.3658) >FruR [nhmmer score 9.5 E-value 8.1 Pos=-260] >KdgR [nhmmer score 10.1 E-value 9.0 Pos=-489] nuoA GZ59_30360 NADH-quinone oxidoreductase chain A nuoB GZ59_30350 NADH-quinone oxidoreductase chain B nuoC GZ59_30340 NADH-quinone oxidoreductase chain C/D nuoE GZ59_30330 NADH-quinone oxidoreductase chain E nuoF GZ59_30320 NADH-quinone oxidoreductase chain F nuoG GZ59_30310 NADH-quinone oxidoreductase chain G nuoH GZ59_30300 NADH-quinone oxidoreductase chain H nuoI GZ59_30290 NADH-quinone oxidoreductase chain I nuoJ GZ59_30280 NADH-quinone oxidoreductase chain J nuoK GZ59_30270 NADH-quinone oxidoreductase chain K nuoL GZ59_30260 NADH-quinone oxidoreductase chain L nuoM GZ59_30250 NADH-quinone oxidoreductase chain M nuoN GZ59_30240 NADH-quinone oxidoreductase chain N (terminator conf=100, tail_score=-5.38047) hexA1 GZ59_30370 LysR-family transcriptional regulator of motility and virulence >NagC [nhmmer score 13.5 E-value 0.76 Pos=-277] alaA GZ59_30380 Glutamate-pyruvate aminotransferase yfbR GZ59_30390 5'-nucleotidase >FruR [nhmmer score 8.7 E-value 16.0 Pos=-86] - GZ59_30420 hypothetical protein - GZ59_30410 putative sugar phosphatase (terminator conf=100, tail_score=-5.60993) (terminator conf=100, tail_score=-5.60993) - GZ59_30410 putative sugar phosphatase - GZ59_30420 hypothetical protein - GZ59_30430 putative membrane protein >ArcA [nhmmer score 8.8 E-value 19.0 Pos=-39] ackA GZ59_30440 acetate kinase (terminator conf=100, tail_score=-4.21812) >RpoN alternative sigma factor [nhmmer score 8.6 E-value 21.0 Pos=-153] >NtrC [nhmmer score 7.6 E-value 61.0 Pos=-311] hisJ GZ59_30550 histidine-binding periplasmic protein hisQ GZ59_30540 histidine ABC transporter permease protein hisM GZ59_30530 histidine ABC transporter permease protein hisP GZ59_30520 histidine ABC transporter ATP-binding protein (terminator conf=87, tail_score=-5.15634) >PurR [nhmmer score 11.2 E-value 2.1 Pos=-91] cvpA GZ59_30580 colicin V production protein purF GZ59_30570 amidophosphoribosyltransferase (terminator conf=100, tail_score=-3.92996) >SlyA [nhmmer score 9.2 E-value 20.0 Pos=-98] dedA GZ59_30620 DedA family inner membrane protein (terminator conf=77, tail_score=-5.24531) (terminator conf=100, tail_score=-5.75538) fabB GZ59_30680 3-oxoacyl-[acyl-carrier-protein] synthase I >FabR [nhmmer score 16.0 E-value 0.071 Pos=-121] >FadR [nhmmer score 6.1 E-value 170.0 Pos=-102] mnmC GZ59_30690 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC >PhoP [nhmmer score 10.3 E-value 10.0 Pos=-27] >FadR [nhmmer score 11.1 E-value 3.6 Pos=-54] fadI GZ59_30850 3-ketoacyl-CoA thiolase fadJ GZ59_30840 fatty acid oxidation complex alpha subunit (terminator conf=86, tail_score=-3.87638) - GZ59_30860 hypothetical protein >CRP [nhmmer score 7.6 E-value 53.0 Pos=-357], [nhmmer score 9.6 E-value 11.0 Pos=-268] >FadR [nhmmer score 8.6 E-value 25.0 Pos=-101] fadL GZ59_30870 long-chain fatty acid transport protein (terminator conf=100, tail_score=-5.72622) >FNR [nhmmer score 7.8 E-value 46.0 Pos=-141] >SlyA [nhmmer score 8.2 E-value 46.0 Pos=-168] nipE GZ59_30950 necrosis inducing protein (terminator conf=80, tail_score=-4.27519) (terminator conf=100, tail_score=-3.17798) - GZ59_30960 putative exported protein - GZ59_30970 hypothetical protein >ArcA [nhmmer score 8.4 E-value 27.0 Pos=-208] - GZ59_30980 hypothetical protein (terminator conf=76, tail_score=-4.22352) - GZ59_30990 hypothetical protein - GZ59_31000 DEAD/DEAH box helicase domain protein - GZ59_31010 molybdate ABC transporter, periplasmic binding protein - GZ59_31020 putative ABC transporter, ATP-binding protein - GZ59_31030 putative ABC-transporter, permease protein - GZ59_31040 putative ABC-transporter, periplasmic-binding protein >ModE [nhmmer score 17.5 E-value 0.036 Pos=-332] >ArcA [nhmmer score 9.7 E-value 9.6 Pos=-127] >Fur [nhmmer score 13.0 E-value 1.3 Pos=-121] - GZ59_31050 alkanal monooxygenase subunit alpha (terminator conf=93, tail_score=-4.04397) >DcuR [nhmmer score 14.9 E-value 0.2 Pos=-30] - GZ59_31200 pectate lyase pehX GZ59_31190 exo-poly-alpha-D-galacturonosidase (terminator conf=100, tail_score=-3.39595) (terminator conf=100, tail_score=-3.40444) hsdR GZ59_31320 type I restriction enzyme EcoEI R protein - GZ59_31330 putative membrane protein - GZ59_31340 hypothetical protein >MetR [MAST score 1529.96 P-value 4e-06 Pos=-181] - GZ59_31350 hypothetical protein metE2_2 GZ59_31360 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (terminator conf=78, tail_score=-3.70149) >RpoN alternative sigma factor [nhmmer score 11.0 E-value 3.1 Pos=-132] - GZ59_31350 hypothetical protein metE2_2 GZ59_31360 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (terminator conf=78, tail_score=-3.70149) - GZ59_31430 hypothetical protein - GZ59_31440 LysR-family transcriptional regulator >Fur [nhmmer score 8.9 E-value 31.0 Pos=-162] - GZ59_31450 hypothetical protein (terminator conf=89, tail_score=-4.58773) - GZ59_31460 PTS system, cellobiose-specific IIa component >PmrA [nhmmer score 15.0 E-value 0.24 Pos=-190] >Fur [nhmmer score 15.2 E-value 0.23 Pos=-164] sfuA GZ59_31470 iron(III)-binding periplasmic protein (terminator conf=100, tail_score=-3.41051) >PmrA [nhmmer score 11.4 E-value 3.6 Pos=-80] >FNR [nhmmer score 7.8 E-value 47.0 Pos=-227] arnB GZ59_31560 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase arnC GZ59_31550 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase arnA GZ59_31540 bifunctional polymyxin resistance protein ArnA arnD GZ59_31530 4-deoxy-4-formamido-L-arabinose- phosphoundecapren ol deformylase arnT GZ59_31520 undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase arnE GZ59_31510 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE arnF GZ59_31500 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF (terminator conf=76, tail_score=-3.90729) ugd GZ59_31570 UDP-glucose 6-dehydrogenase >Rob [nhmmer score 10.7 E-value 5.2 Pos=-298] - GZ59_31580 putative diguanylate cyclase folD GZ59_31590 bifunctional protein - GZ59_31600 hypothetical protein (terminator conf=83, tail_score=-5.10461) (terminator conf=100, tail_score=-5.06735) - GZ59_31620 DoxX family protein >NarP [nhmmer score 8.4 E-value 37.0 Pos=-413] >RcsB [nhmmer score 10.2 E-value 8.2 Pos=-375] ppiB GZ59_31630 peptidyl-prolyl cis-trans isomerase B lpxH GZ59_31640 UDP-2,3-diacylglucosamine hydrolase purE GZ59_31650 phosphoribosylaminoimidazole carboxylase catalytic subunit purK GZ59_31660 phosphoribosylaminoimidazole carboxylase ATPase subunit (terminator conf=100, tail_score=-2.90723) >PurR [nhmmer score 9.2 E-value 11.0 Pos=-129] purE GZ59_31650 phosphoribosylaminoimidazole carboxylase catalytic subunit purK GZ59_31660 phosphoribosylaminoimidazole carboxylase ATPase subunit (terminator conf=100, tail_score=-2.90723) - GZ59_31690 putative transcriptional regulator pstB_1 GZ59_31700 phosphate ABC transporter ATP-binding protein pstA_1 GZ59_31710 phosphate ABC transporter permease protein PstA pstC_1 GZ59_31720 phosphate ABC transporter permease protein PstC >PhoB [nhmmer score 12.3 E-value 1.4 Pos=-96] ppk GZ59_31730 polyphosphate kinase ppx GZ59_31740 exopolyphosphatase >FliA alternative sigma factor [nhmmer score 13.2 E-value 1.0 Pos=-138] - GZ59_31750 putative motility protein (terminator conf=78, tail_score=-4.7254) (terminator conf=95, tail_score=-4.7629) galK GZ59_31800 galactokinase galT GZ59_31810 galactose-1-phosphate uridylyltransferase >GalR [nhmmer score 9.5 E-value 9.3 Pos=-326], [nhmmer score 12.8 E-value 0.75 Pos=-238] >CRP [nhmmer score 9.6 E-value 11.0 Pos=-174] galR GZ59_31820 galactose operon repressor >GalR [nhmmer score 10.8 E-value 3.4 Pos=-254] >CRP [nhmmer score 5.7 E-value 250.0 Pos=-136] lamB GZ59_31830 maltoporin (terminator conf=86, tail_score=-4.78149) malK GZ59_31840 maltose/maltodextrin transport ATP-binding protein >GalR [nhmmer score 9.8 E-value 7.6 Pos=-333] >CRP [nhmmer score 6.5 E-value 130.0 Pos=-303] malE GZ59_31850 maltose-binding periplasmic protein malF GZ59_31860 maltose transport system permease protein malG GZ59_31870 maltose/maltodextrin transport permease protein - GZ59_31880 putative arabinogalactan endo-1,4-beta-galactosidase >BaeR [nhmmer score 17.6 E-value 0.016 Pos=-164] >RcsB [MAST score 2165.58 P-value 5.82e-10 Pos=-164] mdtA GZ59_31940 multidrug efflux transporter subunit MdtA mdtB GZ59_31950 multidrug transporter subunit MdtB mdtC GZ59_31960 multidrug transporter MdtC (terminator conf=76, tail_score=-3.29829) >FNR [nhmmer score 8.2 E-value 34.0 Pos=-157], [nhmmer score 10.3 E-value 6.2 Pos=-138] - GZ59_32030 putative protease (terminator conf=100, tail_score=-4.70659) guaA GZ59_32220 GMP synthase, glutamine-hydrolyzing guaB GZ59_32230 inosine-5'-monophosphate dehydrogenase >PurR [nhmmer score 7.2 E-value 52.0 Pos=-108] xseA GZ59_32240 exodeoxyribonuclease VII, large subunit ndk GZ59_32390 nucleoside diphosphate kinase >ArcA [nhmmer score 9.5 E-value 11.0 Pos=-244] aglA GZ59_32400 PTS system, alpha-glucoside-specific IIbc component aglB GZ59_32410 6-phospho-alpha-glucosidase sseA GZ59_32420 3-mercaptopyruvate sulfurtransferase - GZ59_32430 RpiR-family transcriptional regulator >IscR [nhmmer score 11.7 E-value 1.3 Pos=-96] iscR GZ59_32530 putative transcriptional regulator (terminator conf=100, tail_score=-4.40173) >Fur [nhmmer score 9.1 E-value 28.0 Pos=-72] yiuA GZ59_32560 ferric-enterobactin ABC-transporter, substrate binding periplasmic protein yiuB GZ59_32570 ferric-enterobactin ABC-transporter, permease component yiuC GZ59_32580 ferric-enterobactin ABC transporter ATP-binding protein >PurR [nhmmer score 9.5 E-value 8.1 Pos=-282] - GZ59_32600 methyl-accepting chemotaxis protein - GZ59_32590 hypothetical protein >CpxR [nhmmer score 9.6 E-value 17.0 Pos=-152] hcaT GZ59_32640 putative hydroxycinnamic acid transporter - GZ59_32630 ABC transporter periplasmic component - GZ59_32620 putative ABC-type nickel/cobalt efflux system, permease component - GZ59_32610 Fe3+-hydroxamate ABC transporter, periplasmic component (terminator conf=100, tail_score=-5.68039) (terminator conf=100, tail_score=-5.24129) glyA GZ59_32650 serine hydroxymethyltransferase >PurR [nhmmer score 7.5 E-value 41.0 Pos=-223] >NsrR [nhmmer score 12.6 E-value 1.1 Pos=-50] hmpX GZ59_32660 flavohemoprotein (terminator conf=95, tail_score=-5.32699) >KdgR [nhmmer score 12.5 E-value 1.5 Pos=-214] paeY GZ59_32670 pectin acetylesterase (terminator conf=95, tail_score=-3.33737) >RpoN alternative sigma factor [nhmmer score 13.6 E-value 0.43 Pos=-34] >Fur [nhmmer score 10.0 E-value 13.0 Pos=-79] >GlrR [nhmmer score 10.8 E-value 5.1 Pos=-161], [nhmmer score 13.7 E-value 0.54 Pos=-224], [nhmmer score 10.0 E-value 9.2 Pos=-256] >FNR [nhmmer score 7.0 E-value 87.0 Pos=-201] glmY GZ59_32740 - (terminator) (terminator conf=93, tail_score=-5.15381) purL GZ59_32750 phosphoribosylformylglycinamidine synthase >PurR [nhmmer score 9.9 E-value 6.3 Pos=-100] mltF GZ59_32760 Membrane-bound lytic murein transglycosylase F (terminator conf=89, tail_score=-4.55295) - GZ59_32830 putative hemagglutinin/hemolysin-related protein >RcsB [nhmmer score 8.9 E-value 22.0 Pos=-195] >FNR [nhmmer score 7.1 E-value 82.0 Pos=-111] aggA GZ59_32840 agglutination protein - GZ59_32850 type I secretion system ATPase - GZ59_32860 HlyD family secretion protein (terminator conf=100, tail_score=-5.18995) >RcsB [nhmmer score 7.5 E-value 68.0 Pos=-308] - GZ59_32870 Diguanylate cyclase with PAS/PAC and GAF sensors (terminator conf=100, tail_score=-5.33331) - GZ59_32880 C-di-GMP phosphodiesterase >OxyR [nhmmer score 7.8 E-value 55.0 Pos=-396] >FNR [nhmmer score 6.5 E-value 130.0 Pos=-331] - GZ59_32890 putative ferredoxin >RpoE alternative sigma factor [nhmmer score 9.2 E-value 17.0 Pos=-112] rpoE GZ59_33010 RNA polymerase sigma-E factor rseA GZ59_33000 sigma-E factor negative regulator rseB GZ59_32990 sigma-E factor regulatory protein RseB rseC GZ59_32980 sigma-E factor regulatory protein RseC >FliA alternative sigma factor [nhmmer score 8.3 E-value 41.0 Pos=-119] grcA GZ59_33050 autonomous glycyl radical cofactor GrcA (terminator conf=100, tail_score=-5.4492) (terminator conf=100, tail_score=-5.4492) grcA GZ59_33050 autonomous glycyl radical cofactor GrcA >FNR [nhmmer score 12.5 E-value 1.1 Pos=-231], [nhmmer score 13.0 E-value 0.76 Pos=-178] >PmrA [nhmmer score 10.9 E-value 5.2 Pos=-224] ung GZ59_33060 uracil-DNA glycosylase >SdaR [nhmmer score 10.0 E-value 6.0 Pos=-82] sdaR GZ59_33240 Glycerate-responsive transcriptional regulator for hexarate utilization >RpoE alternative sigma factor [nhmmer score 7.5 E-value 68.0 Pos=-110] degP GZ59_33250 protease Do (terminator conf=100, tail_score=-4.00066) >FliA alternative sigma factor [nhmmer score 8.8 E-value 28.0 Pos=-144] - GZ59_33290 putative lipoprotein (terminator conf=100, tail_score=-5.77571) futC GZ59_33530 Ferric iron (Fe3+) ABC transporter, ATP-binding protein futB GZ59_33540 Ferric iron (Fe3+) ABC transporter, permease protein >Fur [nhmmer score 8.8 E-value 34.0 Pos=-299] - GZ59_33550 putative exported protein speE GZ59_33560 spermidine synthase speD GZ59_33570 S-adenosylmethionine decarboxylase proenzyme >NrdR [nhmmer score 7.0 E-value 72.0 Pos=-130] nrdH GZ59_33580 putative glutaredoxin nrdI GZ59_33590 NrdI protein nrdE GZ59_33600 ribonucleoside-diphosphate reductase, alpha subunit nrdF GZ59_33610 ribonucleoside-diphosphate reductase 2 beta chain (terminator conf=87, tail_score=-3.09878) (terminator conf=100, tail_score=-4.8143) tyrA GZ59_33820 T-protein aroF GZ59_33830 phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive >TyrR [nhmmer score 10.9 E-value 4.9 Pos=-127] yehT GZ59_33840 Stationary phase response regulator inducing yjiY - GZ59_33850 hypothetical protein >LexA [nhmmer score 14.0 E-value 0.47 Pos=-102] recA GZ59_34060 DNA strand exchange and recombination protein - GZ59_34050 regulatory protein RecX alaS GZ59_34040 alanyl-tRNA synthetase (terminator conf=93, tail_score=-4.96848) - GZ59_34080 hypothetical protein >FNR [nhmmer score 8.8 E-value 20.0 Pos=-332] >NarP [nhmmer score 9.8 E-value 13.0 Pos=-40] - GZ59_34090 hypothetical protein marC GZ59_34100 multiple antibiotic resistance protein >RcsB [nhmmer score 7.4 E-value 76.0 Pos=-416] - GZ59_34190 hypothetical protein (terminator conf=93, tail_score=-5.02323) >RcsB [nhmmer score 6.8 E-value 120.0 Pos=-230] - GZ59_34220 YD repeat protein - GZ59_34210 YD repeat protein - GZ59_34200 hypothetical protein >ScrR [nhmmer score 12.4 E-value 0.77 Pos=-51] >RpoN alternative sigma factor [nhmmer score 13.1 E-value 0.63 Pos=-89] >VasH [nhmmer score 22.9 E-value 0.00047 Pos=-244] >CRP [nhmmer score 5.8 E-value 220.0 Pos=-481] hcpC GZ59_34440 type VI secretion system effector, Hcp1 family (terminator conf=100, tail_score=-5.06052) - GZ59_34690 integrase family protein - GZ59_34700 hypothetical protein >RcsB [nhmmer score 9.8 E-value 11.0 Pos=-39] - GZ59_34710 GDSL-like Lipase/Acylhydrolase (terminator conf=100, tail_score=-5.252) - GZ59_34740 - >RcsB [nhmmer score 6.9 E-value 110.0 Pos=-157] - GZ59_34750 putative exported protein (terminator conf=100, tail_score=-3.21912) >LexA [nhmmer score 15.1 E-value 0.21 Pos=-37] dinB GZ59_34820 DNA polymerase IV (terminator conf=89, tail_score=-2.74605) - GZ59_34860 hypothetical protein lpcA GZ59_34870 phosphoheptose isomerase >ArcA [nhmmer score 7.9 E-value 38.0 Pos=-179] >FadR [nhmmer score 9.1 E-value 18.0 Pos=-128] fadE GZ59_34880 acyl-coenzyme A dehydrogenase (terminator conf=100, tail_score=-4.08887) mtrK GZ59_34900 5-methylthioribose kinase >MetJ [nhmmer score 13.5 E-value 0.49 Pos=-72] - GZ59_34910 putative translation initiation factor EIF-2B >FNR [nhmmer score 8.5 E-value 26.0 Pos=-326] - GZ59_34980 type VI secretion protein VgrG - GZ59_34970 hypothetical protein - GZ59_34960 putative membrane protein - GZ59_34950 hypothetical protein - GZ59_34940 hypothetical protein - GZ59_34930 hypothetical protein - GZ59_34920 hypothetical protein (terminator conf=100, tail_score=-2.8664) mtnD2 GZ59_34990 Acireductone dioxygenase 2 mtnC GZ59_35000 Enolase-phosphatase E1 mtnB GZ59_35010 methylthioribulose-1-phosphate dehydratase >MetJ [nhmmer score 12.8 E-value 0.82 Pos=-94] - GZ59_35020 putative aminotransferase - GZ59_35030 putative carbon-nitrogen hydrolase >RpoN alternative sigma factor [nhmmer score 14.7 E-value 0.19 Pos=-102] >CpxR [nhmmer score 7.5 E-value 88.0 Pos=-117] - GZ59_35090 putative amino acid ABC transporter, substrate binding protein - GZ59_35080 putative amino acid ABC transporter, permease protein - GZ59_35070 polar amino acid ABC transporter, inner membrane subunit - GZ59_35060 putative amino acid ABC transporter, ATP-binding protein - GZ59_35050 purine catabolism protein - GZ59_35040 amidase, hydantoinase/carbamoylase family >FNR [nhmmer score 12.0 E-value 1.6 Pos=-163] emrR GZ59_35250 negative regulator of multidrug resistance gmhB GZ59_35440 D,D-heptose 1,7-bisphosphate phosphatase >MetJ [nhmmer score 11.4 E-value 2.4 Pos=-90] metN GZ59_35450 D-methionine transport ATP-binding protein metI GZ59_35460 D-methionine transport system permease protein metQ GZ59_35470 D-methionine-binding lipoprotein (terminator conf=100, tail_score=-4.15703) >RpoE alternative sigma factor [nhmmer score 8.0 E-value 46.0 Pos=-358] nlpD GZ59_35520 Activator of AmiC murein hydrolase activity rpoS GZ59_35510 RNA polymerase sigma factor (terminator conf=100, tail_score=-5.67063) (terminator conf=100, tail_score=-3.80461) - GZ59_35700 c-di-GMP binding protein >Fur [nhmmer score 8.5 E-value 44.0 Pos=-424], [nhmmer score 10.6 E-value 8.3 Pos=-219] >Rob [nhmmer score 11.5 E-value 2.9 Pos=-222] - GZ59_35710 diguanylate phosphodiesterase - GZ59_35730 periplasmic binding protein precursor >CRP [nhmmer score 6.5 E-value 130.0 Pos=-273] - GZ59_35740 putative polygalacturonase - GZ59_35750 putative 6-pyruvoyl tetrahydrobiopterin synthase >RhaS [nhmmer score 27.2 E-value 1.5e-05 Pos=-124] rhiT GZ59_35830 olgogalacturonide transporter rhiN_2 GZ59_35820 plant-inducible protein (terminator conf=87, tail_score=-3.05384) - GZ59_35840 LysR-family transcriptional regulator >Mlc [nhmmer score 10.4 E-value 9.3 Pos=-140] calB GZ59_35850 coniferyl aldehyde dehydrogenase - GZ59_35860 hypothetical protein (terminator conf=100, tail_score=-2.79796) >ModE [nhmmer score 14.0 E-value 0.47 Pos=-62] - GZ59_35880 putative TonB dependent outer membrane transporter for molybdenum - GZ59_35870 periplasmic binding protein (terminator conf=100, tail_score=-4.56597) >SdaR [nhmmer score 12.1 E-value 1.2 Pos=-359] gudX GZ59_36000 putative glucarate dehydratase gudD GZ59_35990 glucarate dehydratase garL GZ59_35980 2-dehydro-3-deoxyglucarate aldolase garR GZ59_35970 2-hydroxy-3-oxopropionate reductase - GZ59_35960 glycerate kinase (terminator conf=100, tail_score=-4.68612) gudP GZ59_36010 putative glucarate transporter >SdaR [nhmmer score 11.3 E-value 2.2 Pos=-316], [nhmmer score 11.9 E-value 1.4 Pos=-140] >CRP [nhmmer score 9.3 E-value 14.0 Pos=-204] garD GZ59_36020 (D)-galactarate dehydrogenase >PhoP [nhmmer score 12.3 E-value 1.9 Pos=-25] garD GZ59_36020 (D)-galactarate dehydrogenase >FliA alternative sigma factor [nhmmer score 8.4 E-value 37.0 Pos=-80] flxA GZ59_36050 FlxA-like family protein (terminator conf=93, tail_score=-5.14563) (terminator conf=100, tail_score=-5.54192) - GZ59_36170 methyl-accepting chemotaxis protein >CRP [nhmmer score 6.8 E-value 100.0 Pos=-194] ppa GZ59_36180 inorganic pyrophosphatase (terminator conf=100, tail_score=-5.38054) (terminator conf=91, tail_score=-4.77036) ytfP GZ59_36190 Gamma-glutamyl cyclotransferase (GGCT) domain protein tamB GZ59_36200 Translocation and assembly module for autotransporter export, inner membrane subunit tamA GZ59_36210 Translocation and assembly module for autotransporter export, outer membrane subunit >ArcA [nhmmer score 10.9 E-value 3.8 Pos=-114] msrA GZ59_36220 peptide methionine sulfoxide reductase (terminator conf=82, tail_score=-4.19953) (terminator conf=100, tail_score=-3.70568) - GZ59_36240 hypothetical protein >CpxR [nhmmer score 8.7 E-value 34.0 Pos=-202] ytfJ GZ59_36250 expressed periplasmic protein (terminator conf=93, tail_score=-3.72324) - GZ59_36290 putative exported protein >ArcA [nhmmer score 8.1 E-value 32.0 Pos=-142] ipdC GZ59_36300 indole-3-pyruvate decarboxylase (terminator conf=76, tail_score=-3.03124) >NarP [nhmmer score 6.5 E-value 170.0 Pos=-81] >NsrR [nhmmer score 17.0 E-value 0.035 Pos=-49] ytfE GZ59_36310 iron-sulfur cluster repair protein YtfE (terminator conf=100, tail_score=-4.83243) (terminator conf=100, tail_score=-4.78157) fklB GZ59_36320 FkbP-type peptidyl-prolyl cis-trans isomerase >CpxR [nhmmer score 7.0 E-value 140.0 Pos=-383] - GZ59_36340 Opacity-associated protein A LysM-like domain protein (terminator conf=100, tail_score=-4.11216) rplI GZ59_36360 50S ribosomal protein L9 rpsR GZ59_36370 30S ribosomal protein S18 priB GZ59_36380 primosomal replication protein N rpsF GZ59_36390 30S ribosomal protein S6 - GZ59_36400 hypothetical protein >FNR [nhmmer score 7.8 E-value 46.0 Pos=-149], [nhmmer score 13.3 E-value 0.6 Pos=-126] - GZ59_36410 methyl-accepting chemotaxis protein >FliA alternative sigma factor [nhmmer score 10.0 E-value 11.0 Pos=-78] - GZ59_36410 methyl-accepting chemotaxis protein - GZ59_36440 putative exported protein - GZ59_36450 hypothetical protein >PhoP [nhmmer score 9.3 E-value 21.0 Pos=-100] - GZ59_36460 putative lipoprotein >SlyA [nhmmer score 8.2 E-value 45.0 Pos=-180], [nhmmer score 9.0 E-value 24.0 Pos=-165] - GZ59_36520 Diguanylate cyclase with PAS/PAC and GAF sensors celB GZ59_36740 PTS system, cellobiose-specific IIB component celH GZ59_36750 putative 6-phospho-beta-glucosidase celC GZ59_36760 PTS system,cellobiose-specific IIC component >CelR [nhmmer score 13.6 E-value 0.42 Pos=-194], [nhmmer score 11.6 E-value 1.9 Pos=-130], [nhmmer score 12.6 E-value 0.88 Pos=-99] celA GZ59_36770 PTS system, cellobiose-specific IIa component celR GZ59_36780 LacI family transcriptional regulator lysA GZ59_36810 diaminopimelate decarboxylase >LysR [nhmmer score 9.0 E-value 21.0 Pos=-45] lysR GZ59_36820 transcriptional activator protein LysR >PspF [nhmmer score 12.0 E-value 1.8 Pos=-154] >RpoN alternative sigma factor [nhmmer score 10.3 E-value 5.7 Pos=-81] pspG GZ59_36900 phage shock protein G (terminator conf=100, tail_score=-3.56325) >RcsB [nhmmer score 7.7 E-value 57.0 Pos=-51] - GZ59_37190 CRISPR-associated protein, Csy1 family - GZ59_37200 CRISPR-associated protein, Csy2 family - GZ59_37210 CRISPR-associated protein Cas5 - GZ59_37220 CRISPR-associated protein Csy4 - GZ59_37330 hypothetical protein uvrA GZ59_37340 excision nuclease subunit A >LexA [nhmmer score 10.9 E-value 5.2 Pos=-157] ssb GZ59_37350 single-strand binding protein (terminator conf=100, tail_score=-5.1417) rhiR GZ59_37420 LacI-family transcriptional regulator rhiF GZ59_37430 ABC transporter, membrane spanning protein rhiG GZ59_37440 ABC transporter, membrane spanning protein rhiK GZ59_37450 ABC transporter, ATP-binding protein rhiN GZ59_37460 glycosyl hydrolase family 88 - GZ59_37470 hypothetical protein >RhiR [nhmmer score 20.0 E-value 0.0041 Pos=-311], [nhmmer score 20.8 E-value 0.0023 Pos=-115] >CRP [nhmmer score 14.3 E-value 0.25 Pos=-232] >FNR [nhmmer score 6.6 E-value 120.0 Pos=-231], [nhmmer score 11.2 E-value 3.1 Pos=-209] rhiL GZ59_37480 putative rhamnogalacturonides ABC transporter, substrate-binding protein gpsK_1 GZ59_37490 glucosamine kinase gpsK_2 GZ59_37500 glucosamine kinase - GZ59_37510 putative calcineurin-like phosphoesterase (terminator conf=100, tail_score=-3.54543) >Zur [nhmmer score 19.5 E-value 0.0048 Pos=-140] - GZ59_37520 metal ion ABC transporter, ATP binding protein - GZ59_37530 metal ion ABC transporter, permease protein - GZ59_37540 ABC transporter substrate-binding protein (terminator conf=79, tail_score=-4.3739) - GZ59_37560 4-hydroxythreonine-4-phosphate dehydrogenase - GZ59_37570 hypothetical protein >CRP [nhmmer score 9.4 E-value 12.0 Pos=-179] - GZ59_37580 putative alcohol dehydrogenase dapA2 GZ59_37590 putative dihydrodipicolinate synthase - GZ59_37600 putative sodium:solute symporter - GZ59_37610 Putative glycosyl hydrolase, BNR repeat protein (terminator conf=100, tail_score=-3.96624) >Rob [nhmmer score 12.9 E-value 1.0 Pos=-410] >CRP [nhmmer score 7.8 E-value 46.0 Pos=-356] >FNR [nhmmer score 12.4 E-value 1.2 Pos=-355] pflD GZ59_37640 formate C-acetyltransferase pflC GZ59_37650 formate-C-acetyltransferase activating enzyme (terminator conf=100, tail_score=-3.73775) sgaR GZ59_37680 Ascorbate utilization transcriptional regulator SgaR, LacI family >SgaR [nhmmer score 11.9 E-value 1.1 Pos=-90] >CRP [nhmmer score 7.3 E-value 67.0 Pos=-75] sgaA GZ59_37690 Ascorbate-specific PTS system, EIIA component sgaB GZ59_37700 Ascorbate-specific PTS system, EIIB component sgaT GZ59_37710 Ascorbate-specific PTS system, EIIC component tal GZ59_37720 fructose-6-phosphate aldolase (terminator conf=78, tail_score=-4.08216) (terminator conf=100, tail_score=-5.64274) acnB GZ59_37740 aconitate hydratase 2 >CRP [nhmmer score 6.4 E-value 140.0 Pos=-303] - GZ59_37750 putative exported protein - GZ59_37760 ArsR-family transcriptional regulator (terminator conf=87, tail_score=-3.57971) >KdgR [nhmmer score 19.6 E-value 0.0065 Pos=-35] - GZ59_37800 putative exported hydrolase >PdhR [nhmmer score 18.3 E-value 0.012 Pos=-52] >OxyR [nhmmer score 9.5 E-value 14.0 Pos=-49] pdhR GZ59_37860 pyruvate dehydrogenase complex repressor aceE GZ59_37840 pyruvate dehydrogenase e1 component aceF GZ59_37830 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (terminator conf=100, tail_score=-5.31275) (terminator conf=100, tail_score=-5.31275) aceF GZ59_37830 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase aceE GZ59_37840 pyruvate dehydrogenase e1 component pdhR GZ59_37860 pyruvate dehydrogenase complex repressor >FruR [nhmmer score 8.4 E-value 19.0 Pos=-433] >ArgR [nhmmer score 15.8 E-value 0.11 Pos=-411] aroP GZ59_37870 aromatic amino acid transport protein (terminator conf=100, tail_score=-4.51363) >TyrR [nhmmer score 11.0 E-value 4.5 Pos=-92] aroP GZ59_37870 aromatic amino acid transport protein (terminator conf=100, tail_score=-4.51363) >GalR [nhmmer score 9.3 E-value 11.0 Pos=-80] - GZ59_37880 Glycoside/pentoside/hexuronide transporter - GZ59_37890 putative alpha-N-arabinofuranosidase ampE GZ59_37900 putative membrane-bound sensory transducer ampD GZ59_37910 anhydro-N-acetylmuramyl-tripeptide amidase >OxyR [nhmmer score 6.4 E-value 160.0 Pos=-266], [nhmmer score 6.6 E-value 140.0 Pos=-59] >CRP [nhmmer score 13.6 E-value 0.46 Pos=-172] >FNR [nhmmer score 7.7 E-value 52.0 Pos=-171] >DeoR [nhmmer score 9.9 E-value 12.0 Pos=-168] >PurR [nhmmer score 9.2 E-value 11.0 Pos=-128] tsx GZ59_37920 nucleoside-specific channel-forming protein (terminator conf=76, tail_score=-4.16943) >RpoE alternative sigma factor [nhmmer score 7.4 E-value 73.0 Pos=-179] tsx GZ59_37920 nucleoside-specific channel-forming protein (terminator conf=76, tail_score=-4.16943) >RpoE alternative sigma factor [nhmmer score 6.3 E-value 170.0 Pos=-265] ampD GZ59_37910 anhydro-N-acetylmuramyl-tripeptide amidase ampE GZ59_37900 putative membrane-bound sensory transducer >Fur [nhmmer score 9.5 E-value 19.0 Pos=-82] nadC GZ59_37930 nicotinate-nucleotide pyrophosphorylase, carboxylating (terminator conf=77, tail_score=-4.30177) >RcsB [nhmmer score 9.0 E-value 22.0 Pos=-318] mraZ GZ59_38200 cell division protein MraZ mraW GZ59_38190 S-adenosyl-methyltransferase ftsL GZ59_38180 cell division protein FtsL ftsI GZ59_38170 peptidoglycan synthetase murE GZ59_38160 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase murF GZ59_38150 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase mraY GZ59_38140 phospho-N-acetylmuramoyl-pentapeptide- transferase murD GZ59_38130 UDP-N-acetylmuramoylalanine--D-glutamate ligase ftsW GZ59_38120 cell division protein FtsW murG GZ59_38110 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase murC GZ59_38100 UDP-N-acetylmuramate--L-alanine ligase ddlB GZ59_38090 D-alanine--D-alanine ligase B ftsQ GZ59_38080 cell division protein FtsQ ftsA GZ59_38070 cell division protein FtsA ftsZ GZ59_38060 cell division protein FtsZ lpxC GZ59_38050 UDP-3-O-(R-3-hydroxymyristoyl)-N- acetylglucosamin e deacetylase lcfH GZ59_38250 putative long-chain-fatty-acid--CoA ligase >FabR [nhmmer score 13.6 E-value 0.42 Pos=-372] leuA GZ59_38270 2-isopropylmalate synthase leuB GZ59_38280 3-isopropylmalate dehydrogenase leuC GZ59_38290 3-isopropylmalate dehydratase large subunit leuD GZ59_38300 3-isopropylmalate dehydratase small subunit (terminator conf=100, tail_score=-5.75538) >LexA [nhmmer score 9.2 E-value 19.0 Pos=-67] polB GZ59_38510 DNA polymerase II hepA GZ59_38520 RNA polymerase associated protein rluA GZ59_38530 ribosomal large subunit pseudouridine synthase A >ArgR [nhmmer score 14.1 E-value 0.43 Pos=-53] carA GZ59_38690 carbamoyl-phosphate synthase small chain carB GZ59_38680 carbamoyl-phosphate synthase large chain (terminator conf=100, tail_score=-4.72272) >NhaR [nhmmer score 6.2 E-value 190.0 Pos=-125] nhaA GZ59_38780 Na+/H+ antiporter NhaA nhaR GZ59_38770 transcriptional activator of cation transport (terminator conf=100, tail_score=-5.75945) >RpoH heat shock alternative sigma factor [nhmmer score 15.0 E-value 0.12 Pos=-217] dnaK GZ59_38810 chaperone protein DnaK - GZ59_38800 - dnaJ GZ59_38790 chaperone protein DnaJ (terminator conf=100, tail_score=-5.93809) >TyrR [nhmmer score 10.2 E-value 8.6 Pos=-69] >FliA alternative sigma factor [nhmmer score 8.4 E-value 38.0 Pos=-95] - GZ59_38830 MFC transporter (terminator conf=100, tail_score=-3.53811) (terminator conf=100, tail_score=-3.53811) - GZ59_38830 MFC transporter mog GZ59_38840 molybdopterin biosynthesis protein >NarP [nhmmer score 6.8 E-value 140.0 Pos=-156] - GZ59_38850 diguanylate cyclase (terminator conf=100, tail_score=-4.82901) - GZ59_38920 putative RNA methyltransferase >FNR [nhmmer score 9.4 E-value 13.0 Pos=-342] arcA GZ59_38930 aerobic respiration control protein (terminator conf=100, tail_score=-4.8143) >TrpR [nhmmer score 16.5 E-value 0.078 Pos=-31] trpR GZ59_38980 Trp operon repressor >CRP [nhmmer score 6.1 E-value 180.0 Pos=-196] >FNR [nhmmer score 7.1 E-value 78.0 Pos=-195] >KdgR [nhmmer score 10.4 E-value 7.2 Pos=-202] - GZ59_39010 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-4.56367) >PurR [nhmmer score 7.6 E-value 37.0 Pos=-99] serA GZ59_39040 D-3-phosphoglycerate dehydrogenase >FruR [nhmmer score 12.1 E-value 1.1 Pos=-122] epd GZ59_39120 D-erythrose 4-phosphate dehydrogenase pgk GZ59_39110 phosphoglycerate kinase fbaA GZ59_39100 fructose-bisphosphate aldolase class II (terminator conf=95, tail_score=-3.3422) (terminator conf=100, tail_score=-5.60864) - GZ59_39160 arginine decarboxylase - GZ59_39170 hypothetical protein >MetJ [nhmmer score 8.2 E-value 28.0 Pos=-74] metK GZ59_39180 S-adenosylmethionine synthetase (terminator conf=93, tail_score=-3.8591) >CRP [nhmmer score 11.1 E-value 3.2 Pos=-65] >OxyR [nhmmer score 8.5 E-value 32.0 Pos=-99] ahpC GZ59_39410 alkyl hydroperoxide reductase C22 protein (terminator conf=100, tail_score=-4.37092) (terminator conf=100, tail_score=-4.37092) ahpC GZ59_39410 alkyl hydroperoxide reductase C22 protein - GZ59_39420 putative membrane protein >DcuR [nhmmer score 12.7 E-value 1.0 Pos=-103] - GZ59_39430 hypothetical protein >CRP [nhmmer score 6.2 E-value 170.0 Pos=-38] >Fur [nhmmer score 8.7 E-value 38.0 Pos=-184] >SlyA [nhmmer score 8.6 E-value 32.0 Pos=-193] - GZ59_39450 putative exported protein >RpoN alternative sigma factor [nhmmer score 8.9 E-value 16.0 Pos=-139] - GZ59_39540 ABC transporter, substrate binding protein - GZ59_39530 ABC transporter protein, membrane protein - GZ59_39520 ABC transporter related - GZ59_39610 - - GZ59_39620 - orn GZ59_39630 oligoribonuclease >FNR [nhmmer score 8.6 E-value 25.0 Pos=-222] rsgA GZ59_39640 putative ribosome biogenesis GTPase RsgA - GZ59_39650 phosphatidylserine decarboxylase bspA GZ59_39660 putative mechanosensitive ion channel (terminator conf=87, tail_score=-4.44819) poxA GZ59_39670 putative lysyl-tRNA synthetase >Rob [nhmmer score 13.7 E-value 0.53 Pos=-240] >Fur [nhmmer score 8.7 E-value 36.0 Pos=-60] frdA GZ59_39680 fumarate reductase flavoprotein subunit frdB GZ59_39690 fumarate reductase iron-sulfur protein frdC GZ59_39700 fumarate reductase 15 kDa hydrophobic protein frdD GZ59_39710 fumarate reductase 13 kDa hydrophobic protein (terminator conf=100, tail_score=-3.54488) (terminator conf=100, tail_score=-2.72511) nptA GZ59_39810 putative sodium/phosphate cotransporter >DcuR [nhmmer score 15.3 E-value 0.15 Pos=-146] dasS GZ59_39820 divalent anion:sodium symporter (terminator conf=93, tail_score=-4.36914) >Fur [nhmmer score 9.9 E-value 14.0 Pos=-47] foxA GZ59_39830 ferrioxamine B receptor (terminator conf=91, tail_score=-4.63928) >KdgR [nhmmer score 9.4 E-value 16.0 Pos=-85] - GZ59_39910 hypothetical protein - GZ59_39900 hypothetical protein - GZ59_39890 hypothetical protein - GZ59_39880 putative phage regluatory protein - GZ59_39870 phage regulatory protein (terminator conf=100, tail_score=-5.06451) >HexR [nhmmer score 11.0 E-value 5.9 Pos=-195] >MetR [nhmmer score 10.3 E-value 8.7; this site was probably controlling metH before prophage insertion Pos=-112] >FliA alternative sigma factor [nhmmer score 9.9 E-value 12.0 Pos=-106] >CpxR [nhmmer score 9.3 E-value 23.0 Pos=-47] iclR GZ59_40370 acetate operon repressor (terminator conf=100, tail_score=-3.54741) >IclR [nhmmer score 26.1 E-value 4.8e-05 Pos=-136] aceB GZ59_40400 malate synthase A aceA GZ59_40390 isocitrate lyase (terminator conf=93, tail_score=-3.83502) >MetJ [nhmmer score 15.4 E-value 0.11 Pos=-48] >MetR [nhmmer score 10.7 E-value 6.4 Pos=-116] metA GZ59_40410 homoserine O-succinyltransferase (terminator conf=100, tail_score=-5.9873) >Fur [nhmmer score 12.9 E-value 1.3 Pos=-129] bfd GZ59_40900 bacterioferritin-associated ferredoxin bfr GZ59_40890 bacterioferritin (terminator conf=100, tail_score=-3.6502) fusA GZ59_40920 elongation factor G rpsG GZ59_40930 30S ribosomal subunit protein S7 rpsL GZ59_40940 30S ribosomal subunit protein S12 dsrH GZ59_40950 putative intracellular sulfur oxidation protein dsrF GZ59_40960 putative intracellular sulfur oxidation protein dsrE GZ59_40970 putative intracellular sulfur oxidation protein - GZ59_40980 YheO domain protein >PmrA [nhmmer score 13.4 E-value 0.77 Pos=-78] pmrC GZ59_40990 putative sulfatase pmrA GZ59_41000 two-component response regulator pmrB GZ59_41010 two-component sensor kinase >SlyA [nhmmer score 13.2 E-value 0.96 Pos=-69] pabA GZ59_41220 glutamine amidotransferase of anthranilate synthase argD GZ59_41210 acetylornithine/succinyldiaminopimelate aminotransferase (terminator conf=100, tail_score=-5.5112) (terminator conf=100, tail_score=-5.5112) argD GZ59_41210 acetylornithine/succinyldiaminopimelate aminotransferase pabA GZ59_41220 glutamine amidotransferase of anthranilate synthase >CpxR [nhmmer score 7.0 E-value 130.0 Pos=-421] >CRP [nhmmer score 10.3 E-value 6.0 Pos=-357] pelA GZ59_41230 pectate lyase I (terminator conf=100, tail_score=-5.00884) >SlyA [nhmmer score 13.7 E-value 0.63 Pos=-482] >CRP [nhmmer score 7.1 E-value 77.0 Pos=-407], [nhmmer score 6.1 E-value 180.0 Pos=-348] >FNR [nhmmer score 9.2 E-value 15.0 Pos=-406] >KdgR [nhmmer score 14.5 E-value 0.32 Pos=-290], [nhmmer score 9.4 E-value 16.0 Pos=-103] pelC GZ59_41250 pectate lyase III (terminator conf=100, tail_score=-4.99861) >CpxR [nhmmer score 11.9 E-value 3.0 Pos=-91] ppiA GZ59_41270 peptidyl-prolyl cis-trans isomerase cyclophilin type (terminator conf=78, tail_score=-3.66803) (terminator conf=82, tail_score=-3.99275) - GZ59_41280 ABC transporter ATP-binding protein - GZ59_41290 ABC transporter related - GZ59_41300 ABC transporter permease protein - GZ59_41310 D-ala-D-ala transporter subunit - GZ59_41320 ABC transporter, substrate binding protein - GZ59_41330 putative mandelate racemase / muconate lactonizing enzyme >CRP [nhmmer score 6.3 E-value 150.0 Pos=-496], [nhmmer score 6.7 E-value 110.0 Pos=-342] >KdgR [nhmmer score 15.0 E-value 0.21 Pos=-455] >SdaR [nhmmer score 11.9 E-value 1.4 Pos=-362] nirB GZ59_41340 nitrite reductase [NAD(P)H] large subunit nirD GZ59_41350 nitrite reductase [NAD(P)H] small subunit cysG2 GZ59_41360 siroheme synthase (terminator conf=100, tail_score=-3.62775) >NarP [nhmmer score 9.4 E-value 18.0 Pos=-100] >FNR [nhmmer score 12.1 E-value 1.6 Pos=-74] nirB GZ59_41340 nitrite reductase [NAD(P)H] large subunit nirD GZ59_41350 nitrite reductase [NAD(P)H] small subunit cysG2 GZ59_41360 siroheme synthase (terminator conf=100, tail_score=-3.62775) >NtrC [nhmmer score 8.0 E-value 43.0 Pos=-449] >FNR [nhmmer score 6.7 E-value 110.0 Pos=-340] >Fur [nhmmer score 10.1 E-value 13.0 Pos=-333] >ArgR [nhmmer score 13.8 E-value 0.52 Pos=-305] >RpoN alternative sigma factor [nhmmer score 10.2 E-value 5.9 Pos=-273] occQ GZ59_41370 octopine transport system permease protein OccQ occM GZ59_41380 octopine transport system permease protein OccM occP GZ59_41390 octopine permease ATP-binding protein P (terminator conf=100, tail_score=-3.98214) nudE GZ59_41550 ADP compounds hydrolase >CRP [nhmmer score 9.1 E-value 16.0 Pos=-319] igaA GZ59_41560 intracellular growth attenuator protein - GZ59_41570 HAD-superfamily hydrolase, subfamily IA, variant 3 hslR GZ59_41580 heat shock protein hslO GZ59_41590 heat shock protein (33 kDa chaperonin) (terminator conf=100, tail_score=-5.19998) (terminator conf=86, tail_score=-2.83867) - GZ59_41700 hypothetical protein - GZ59_41710 putative siderophore biosynthesis protein >Fur [nhmmer score 9.1 E-value 27.0 Pos=-89] - GZ59_41720 putative citrate lyase beta chain >FliA alternative sigma factor [nhmmer score 9.6 E-value 15.0 Pos=-185] - GZ59_41750 methyl-accepting chemotaxis protein (terminator conf=86, tail_score=-2.79209) cisY GZ59_41760 citrate synthase >FNR [nhmmer score 11.6 E-value 2.3 Pos=-182] tex GZ59_41770 putative RNA binding protein (terminator conf=100, tail_score=-3.72893) >KdgR [nhmmer score 16.8 E-value 0.054 Pos=-139] >CRP [nhmmer score 6.9 E-value 97.0 Pos=-87] rexZ GZ59_41780 regulator of exoenzymes >Rob [nhmmer score 10.7 E-value 5.4 Pos=-258] kdgT GZ59_41790 2-keto-3-deoxygluconate permease kduI2 GZ59_41800 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (terminator conf=100, tail_score=-4.21773) >PhoB [nhmmer score 13.5 E-value 0.55 Pos=-68] >CpxR [nhmmer score 11.2 E-value 5.2 Pos=-57] phoA GZ59_41850 alkaline phosphatase - GZ59_41840 putative exported protein - GZ59_41830 ABC transporter, ATP-binding protein - GZ59_41820 putative permease >BaeR [nhmmer score 18.0 E-value 0.012 Pos=-166], [nhmmer score 17.9 E-value 0.012 Pos=-177] >RcsB [MAST score 2856.17 P-value 2.29e-11 Pos=-166] acrD GZ59_41860 putative aminoglycoside efflux pump phoA GZ59_41850 alkaline phosphatase - GZ59_41840 putative exported protein - GZ59_41830 ABC transporter, ATP-binding protein - GZ59_41820 putative permease >IscR [nhmmer score 9.4 E-value 8.4 Pos=-37] nfuA GZ59_41890 Fe/S biogenesis protein NfuA (terminator conf=90, tail_score=-3.34812) - GZ59_41900 4-alpha-glucanotransferase malP GZ59_41910 maltodextrin phosphorylase glpR GZ59_41920 glycerol-3-phosphate regulon repressor glpG GZ59_41930 intramembrane serine protease GlpG >Fur [nhmmer score 10.7 E-value 7.5 Pos=-488] - GZ59_41950 putative glyoxalase (terminator conf=91, tail_score=-4.67942) >CRP [nhmmer score 6.1 E-value 180.0 Pos=-144] >GlpR [nhmmer score 10.3 E-value 7.3 Pos=-46] glpD GZ59_41960 aerobic glycerol-3-phosphate dehydrogenase >RpoE alternative sigma factor [nhmmer score 7.1 E-value 92.0 Pos=-425] - GZ59_41970 type VI secretion system Vgr family protein - GZ59_41980 hypothetical protein - GZ59_41990 hypothetical protein - GZ59_42000 hypothetical protein - GZ59_42010 hypothetical protein - GZ59_42020 hypothetical protein (terminator conf=100, tail_score=-4.58395) (terminator conf=100, tail_score=-3.72576) glgP GZ59_42030 glycogen phosphorylase glgA GZ59_42040 glycogen synthase glgC GZ59_42050 glucose-1-phosphate adenylyltransferase glgX GZ59_42060 intracellular isoamylase glgB GZ59_42070 1,4-alpha-glucan branching enzyme >FNR [nhmmer score 7.5 E-value 57.0 Pos=-350] >SlyA [nhmmer score 11.3 E-value 4.1 Pos=-251] yehU GZ59_42080 Stationary phase sensor kinase regulating yjiY gntP_1 GZ59_42130 gluconate permease >ArcA [nhmmer score 9.3 E-value 13.0 Pos=-37] - GZ59_42140 - gntR_2 GZ59_42150 - >CpxR [nhmmer score 7.7 E-value 75.0 Pos=-317], [nhmmer score 9.8 E-value 15.0 Pos=-141] >Fur [nhmmer score 9.9 E-value 15.0 Pos=-160] - GZ59_42160 Glycosyl hydrolase family 3 protein (terminator conf=86, tail_score=-2.75986) >Fur [nhmmer score 13.0 E-value 1.2 Pos=-132] - GZ59_42180 - (terminator conf=100, tail_score=-6.21477) glpC GZ59_42190 anaerobic glycerol-3-phosphate dehydrogenase subunit C glpB GZ59_42200 anaerobic glycerol-3-phosphate dehydrogenase subunit B glpA GZ59_42210 anaerobic glycerol-3-phosphate dehydrogenase subunit A >PhoB [nhmmer score 14.3 E-value 0.28 Pos=-115] glpT GZ59_42230 glycerol-3-phosphate transporter (terminator conf=100, tail_score=-4.03234) >CRP [nhmmer score 6.5 E-value 130.0 Pos=-66] - GZ59_42320 EamA-like transporter family protein >LexA [nhmmer score 8.1 E-value 44.0 Pos=-72] uvrD GZ59_42360 DNA helicase II - GZ59_42350 cyclase family protein (terminator conf=79, tail_score=-5.31456) (terminator conf=100, tail_score=-6.02914) ilvC GZ59_42850 ketol-acid reductoisomerase >IlvY [nhmmer score 8.9 E-value 25.0 Pos=-39] ilvY GZ59_42860 LysR-family transcriptional activator of ilvC - GZ59_42870 putative exported protein murI GZ59_43080 glutamate racemase btuB GZ59_43090 vitamin B12 receptor precursor >MetJ [nhmmer score 12.6 E-value 0.96 Pos=-124] trmA GZ59_43110 tRNA (uracil-5)-methyltransferase >KdgR [nhmmer score 10.2 E-value 8.8 Pos=-144] >Fur [nhmmer score 8.5 E-value 43.0 Pos=-416] oxyR GZ59_43150 DNA-binding transcriptional dual regulator >MetJ [nhmmer score 16.5 E-value 0.048 Pos=-37] >MetR [nhmmer score 11.3 E-value 4.0 Pos=-127] metF GZ59_43160 5,10-methylenetetrahydrofolate reductase (terminator conf=100, tail_score=-3.30159) metL GZ59_43230 bifunctional aspartokinase/homoserine dehydrogenase II - GZ59_43240 O-succinylhomoserine (thiol)-lyase >MetJ [nhmmer score 12.0 E-value 1.5 Pos=-129], [nhmmer score 13.2 E-value 0.58 Pos=-113] metJ GZ59_43250 repressor of the methionine regulon (terminator conf=100, tail_score=-3.28712) >Zur [nhmmer score 14.7 E-value 0.18 Pos=-54] - GZ59_43260 putative iron(III) ABC transporter ATP-binding protein - GZ59_43270 putative iron(III) ABC transporter, periplasmic-binding protein - GZ59_43280 transport system permease protein (terminator conf=85, tail_score=-4.183) >VasH [nhmmer score 22.9 E-value 0.00047 Pos=-226] >RpoN alternative sigma factor [nhmmer score 12.7 E-value 0.91 Pos=-71] >ScrR [nhmmer score 10.3 E-value 3.7 Pos=-33] hcpA GZ59_43470 type VI secretion system effector, Hcp1 family (terminator conf=100, tail_score=-5.08824) >FruR [nhmmer score 10.4 E-value 4.2 Pos=-138] pfkA GZ59_43640 6-phosphofructokinase isozyme I >FNR [nhmmer score 7.1 E-value 79.0 Pos=-34] - GZ59_43670 hypothetical protein (terminator conf=91, tail_score=-5.31519) >NrdR [nhmmer score 7.4 E-value 52.0 Pos=-215] - GZ59_43940 hypothetical protein - GZ59_43930 hypothetical protein (terminator conf=79, tail_score=-2.55999) (terminator conf=100, tail_score=-5.82388) cpxP GZ59_44070 putative stress resistance protein >CpxR [nhmmer score 7.2 E-value 110.0 Pos=-68] cpxR GZ59_44080 two-component response regulator cpxA GZ59_44090 two-component sensor kinase - GZ59_44100 putative exported protein - GZ59_44110 hypothetical protein - GZ59_44200 putative exported protein - GZ59_44210 hypothetical protein - GZ59_44220 DeoR-family trancriptional regulator >CRP [nhmmer score 10.0 E-value 7.7 Pos=-92] - GZ59_44230 putative oxidoreductase - GZ59_44240 hypothetical protein - GZ59_44250 putative sugar aldolase - GZ59_44260 Putative hydroxypyruvate isomerase - GZ59_44270 Putative GntP family transporter (terminator conf=100, tail_score=-4.37527) >FliA alternative sigma factor [nhmmer score 13.6 E-value 0.7 Pos=-151] - GZ59_44290 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.9003) >Rob [nhmmer score 10.8 E-value 5.0 Pos=-478] - GZ59_44310 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-4.20106) >RpoE alternative sigma factor [nhmmer score 10.2 E-value 8.4 Pos=-162] rpoH GZ59_44400 RNA polymerase sigma-32 factor (terminator conf=100, tail_score=-5.35224) ftsX GZ59_44410 cell division protein ftsE GZ59_44420 cell division ATP-binding protein ftsY GZ59_44430 signal recognition particle-docking protein FtsY >Fur [nhmmer score 8.7 E-value 36.0 Pos=-312] rsmD GZ59_44440 16S rRNA m(2)G966-methyltransferase - GZ59_44450 putative membrane protein >FliA alternative sigma factor [nhmmer score 8.0 E-value 50.0 Pos=-286] rsmD GZ59_44440 16S rRNA m(2)G966-methyltransferase - GZ59_44450 putative membrane protein tusA GZ59_44500 Sulfurtransferase TusA >PurR [nhmmer score 8.1 E-value 25.0 Pos=-149] - GZ59_44510 putative membrane protein dcrB GZ59_44520 putative lipoprotein (terminator conf=91, tail_score=-3.99324) >Fur [nhmmer score 8.5 E-value 43.0 Pos=-333] - GZ59_44530 hypothetical protein - GZ59_44540 putative lipoprotein >KdgR [nhmmer score 15.8 E-value 0.12 Pos=-126] kdgK GZ59_44570 2-dehydro-3-deoxygluconokinase (terminator conf=100, tail_score=-4.73094) bcsG GZ59_44610 cellulose biosynthesis protein BcsG bcsF GZ59_44620 cellulose biosynthesis protein BcsF bcsE GZ59_44630 cellulose biosynthesis protein BcsE >FNR [nhmmer score 9.0 E-value 18.0 Pos=-46] bcsR GZ59_44640 cellulose biosynthesis protein BcsR bcsQ GZ59_44650 cellulose biosynthesis protein BcsQ bcsA GZ59_44660 - bcsB GZ59_44680 Cellulose synthase BcsB bcsZ GZ59_44690 endoglucanase eamA GZ59_44800 putative amino acid metabolite efflux pump - GZ59_44810 putative exported protein >FruR [nhmmer score 8.0 E-value 27.0 Pos=-375] >CRP [nhmmer score 8.6 E-value 25.0 Pos=-322] avtA GZ59_44820 Valine-pyruvate aminotransferase >CRP [nhmmer score 7.9 E-value 43.0 Pos=-166] bglG GZ59_44850 beta-glucoside operon antiterminator bglF_2 GZ59_44840 PTS system, beta-glucoside specific IIabc component bglB GZ59_44830 beta-glucosidase >FNR [nhmmer score 6.6 E-value 120.0 Pos=-498] >Mlc [nhmmer score 10.9 E-value 6.2 Pos=-371] >Rob [nhmmer score 13.1 E-value 0.85 Pos=-212] >CpxR [nhmmer score 7.1 E-value 130.0 Pos=-191] maeN GZ59_44910 Na(+)-malate symporter (terminator conf=100, tail_score=-3.67597) >RpoH heat shock alternative sigma factor [nhmmer score 17.7 E-value 0.016 Pos=-145] ibpA GZ59_44990 heat shock protein A ibpB GZ59_44980 heat shock protein B (terminator conf=100, tail_score=-4.66537) celG GZ59_45030 Beta-glucosidase celF GZ59_45040 PTS system cellobiose specific EIIC component celE GZ59_45050 phosphotransferase system cellobiose-specific IIB subunit >AscG [nhmmer score 12.7 E-value 0.64 Pos=-303] ssuA GZ59_45070 putative aliphatic sulfonates binding protein ssuD GZ59_45080 alkanesulfonate monooxygenase ssuC GZ59_45090 putative aliphatic sulfonates transport permease protein ssuB GZ59_45100 putative aliphatic sulfonates transport ATP-binding protein - GZ59_45110 putative exported protein (terminator conf=100, tail_score=-5.68039) >Mlc [nhmmer score 11.4 E-value 4.4 Pos=-236] dgoT GZ59_45120 putative D-galactonate transporter (terminator conf=100, tail_score=-5.35354) >FNR [nhmmer score 6.5 E-value 130.0 Pos=-321] >SlyA [nhmmer score 8.5 E-value 36.0 Pos=-323] >Fur [nhmmer score 9.3 E-value 24.0 Pos=-335] - GZ59_45310 hypothetical protein - GZ59_45300 putative lipoprotein - GZ59_45290 putative transposase (terminator conf=83, tail_score=-4.78149) bglA GZ59_45320 6-phospho-beta-glucosidase bglI GZ59_45330 pts system, cellobiose-specific IIA component bglF GZ59_45340 PTS system, IIC component bglE GZ59_45350 pts system, IIB component >AscG [nhmmer score 13.3 E-value 0.4 Pos=-163] >CpxR [nhmmer score 8.3 E-value 49.0 Pos=-139] >CRP [nhmmer score 7.5 E-value 57.0 Pos=-133] - GZ59_45360 LacI-family transcriptional regulator - GZ59_45370 MFS efflux transporter >Rob [nhmmer score 11.5 E-value 3.0 Pos=-171] - GZ59_45480 putative type II restriction endonuclease (terminator conf=100, tail_score=-4.04188) qorB GZ59_45490 Quinone oxidoreductase 2, NAD(P)H dependent >QorR [nhmmer score 17.9 E-value 0.022 Pos=-39] qorR GZ59_45500 Redox-sensing transcriptional regulator QorR, HxlR family >NsrR [nhmmer score 9.5 E-value 11.0 Pos=-95] smvA GZ59_45580 putative methyl viologen resistance protein (terminator conf=83, tail_score=-3.32769) (terminator conf=100, tail_score=-5.27923) - GZ59_45590 putative lipoprotein - GZ59_45600 putative lipoprotein - GZ59_45610 putative lipoprotein >FruR [nhmmer score 12.0 E-value 1.1 Pos=-144] aegA GZ59_45620 anaerobically expressed oxidoreductase - GZ59_45630 electron transport protein - GZ59_45640 putative membrane protein >PhoB [nhmmer score 11.1 E-value 3.5 Pos=-107], [nhmmer score 16.1 E-value 0.073 Pos=-140] pstS GZ59_45770 phosphate-binding periplasmic protein (terminator conf=83, tail_score=-3.11619) >RpoN alternative sigma factor [nhmmer score 11.3 E-value 2.5 Pos=-59] nac_2 GZ59_45830 nitrogen assimilation regulatory protein - GZ59_45820 hypothetical protein - GZ59_45810 putative short-chain dehydrogenase - GZ59_45800 putative amino acid ABC transporter, permease protein - GZ59_45790 putative amino acid ABC transporter, permease protein - GZ59_45780 amino acid ABC transporter, ATP-binding protein (terminator conf=88, tail_score=-3.54543) >CRP [nhmmer score 6.4 E-value 140.0 Pos=-155] - GZ59_46060 putative lipoprotein (terminator conf=77, tail_score=-5.28414) (terminator conf=79, tail_score=-4.73613) glmS GZ59_46070 L-glutamine:D-fructose-6-phosphate aminotransferase glmU GZ59_46080 bifunctional GlmU protein >KdgR [nhmmer score 10.9 E-value 5.0 Pos=-131], [nhmmer score 17.3 E-value 0.039 Pos=-67] pelX GZ59_46090 exopolygalacturonate lyase >NarP [nhmmer score 6.7 E-value 140.0 Pos=-35] >CRP [nhmmer score 9.0 E-value 17.0 Pos=-256] atpI GZ59_46180 ATP synthase protein I atpB GZ59_46170 ATP synthase A chain atpE GZ59_46160 ATP synthase C chain atpF GZ59_46150 ATP synthase B chain atpH GZ59_46140 ATP synthase delta chain atpA GZ59_46130 ATP synthase alpha chain (terminator conf=100, tail_score=-3.53012) ================================================== Total operons: 596 Total genes: 1589 Running the OperOn script... OperOn 1.10 (December 10) ================================================== Regulator Gene Locus_tag Product >RbsR [nhmmer score 22.5 E-value 0.00038 Pos=-108], [nhmmer score 23.2 E-value 0.00024 Pos=-31] >CRP [nhmmer score 6.7 E-value 110.0 Pos=-100] rbsD GZ59_00100 high affinity ribose transport protein rbsA GZ59_00110 ribose transport ATP-binding protein rbsC GZ59_00120 ribose transport permease system protein rbsB GZ59_00130 ribose-binding periplasmic protein (terminator conf=79, tail_score=-2.78813) rbsK GZ59_00140 ribokinase rbsR GZ59_00150 ribose operon repressor >NtrC [nhmmer score 7.9 E-value 48.0 Pos=-30] ntrB GZ59_00330 nitrogen regulation two-component system, histidine kinase ntrC GZ59_00320 nitrogen regulation two-component system, response regulator (terminator conf=100, tail_score=-5.64006) >RpoN alternative sigma factor [nhmmer score 12.5 E-value 1.0 Pos=-104] glnA GZ59_00340 glutamine synthetase (terminator conf=100, tail_score=-5.00616) (terminator conf=100, tail_score=-5.00616) glnA GZ59_00340 glutamine synthetase >NtrC [nhmmer score 8.7 E-value 25.0 Pos=-217], [nhmmer score 10.1 E-value 8.4 Pos=-199], [nhmmer score 9.3 E-value 15.0 Pos=-167] >CRP [nhmmer score 7.6 E-value 56.0 Pos=-126] typA GZ59_00350 GTP-binding regulatory protein (terminator conf=100, tail_score=-2.55034) - GZ59_00360 haloacid dehalogenase-like hydrolase dtd GZ59_00370 D-tyrosyl-tRNA(Tyr) deacylase - GZ59_00380 putative GNAT-family acetyltransferase/thioesterase (terminator conf=95, tail_score=-3.14051) (terminator conf=95, tail_score=-3.57263) >CpxR [nhmmer score 7.1 E-value 120.0 Pos=-103] - GZ59_00380 putative GNAT-family acetyltransferase/thioesterase (terminator conf=95, tail_score=-3.14051) (terminator conf=95, tail_score=-3.57263) >PurR [nhmmer score 10.8 E-value 2.9 Pos=-75] xanP GZ59_00400 xanthine permease XanP (terminator conf=100, tail_score=-4.86133) - GZ59_00390 AsmA family protein >FNR [nhmmer score 6.9 E-value 94.0 Pos=-255] pagC GZ59_00500 outer membrane beta-barrel protein - GZ59_00510 diguanylate phosphodiesterase - GZ59_00520 putative exported protein >FNR [nhmmer score 6.5 E-value 130.0 Pos=-143] >PhoB [nhmmer score 16.1 E-value 0.077 Pos=-88] pitA GZ59_00530 low-affinity inorganic phosphate transporter (terminator conf=100, tail_score=-5.2197) >FNR [nhmmer score 7.0 E-value 86.0 Pos=-235] gdhA GZ59_00560 NADP-specific glutamate dehydrogenase (terminator conf=79, tail_score=-3.04792) - GZ59_00570 hypothetical protein >Fur [nhmmer score 10.4 E-value 9.7 Pos=-51] - GZ59_00620 FecI-like RNA polymerase sigma factor - GZ59_00630 FecR-like transmembrane sensor - GZ59_00650 hypothetical protein >ModE [nhmmer score 19.1 E-value 0.01 Pos=-294] rsmJ GZ59_00660 Ribosomal RNA large subunit methyltransferase J gor GZ59_00670 putative glutathione reductase (terminator conf=100, tail_score=-5.67063) >OxyR [nhmmer score 6.7 E-value 130.0 Pos=-79] gor GZ59_00670 putative glutathione reductase (terminator conf=100, tail_score=-5.67063) - GZ59_00680 hypothetical protein - GZ59_00690 hypothetical protein >Fur [nhmmer score 10.6 E-value 8.3 Pos=-101] - GZ59_00700 siderophore-interacting FAD-binding domain protein (terminator conf=83, tail_score=-3.25204) tkrA GZ59_00820 2-ketogluconate reductase >CRP [nhmmer score 9.8 E-value 9.6 Pos=-124] - GZ59_00830 methyl-accepting chemotaxis sensory transducer (terminator conf=90, tail_score=-3.32769) - GZ59_00840 putative GNAT-family acetyltransferase tag GZ59_00850 DNA-3-methyladenine glycosylase I >LexA [nhmmer score 9.4 E-value 17.0 Pos=-200] - GZ59_00860 hypothetical protein - GZ59_00870 glycyl-tRNA synthetase, alpha subunit glyS GZ59_00880 glycine-tRNA synthetase, beta subunit (terminator conf=81, tail_score=-3.01089) (terminator conf=100, tail_score=-3.7697) - GZ59_00890 hypothetical protein - GZ59_00900 flagellar motor protein MotB smc GZ59_00910 Chromosome partition protein Smc >KdgR [nhmmer score 10.4 E-value 7.5 Pos=-218] - GZ59_00920 hypothetical protein >CRP [nhmmer score 13.5 E-value 0.48 Pos=-348], [nhmmer score 11.1 E-value 3.4 Pos=-304], [nhmmer score 9.5 E-value 12.0 Pos=-231], [nhmmer score 7.2 E-value 73.0 Pos=-187] mtlA GZ59_00930 PTS system, mannitol-specific IIabc component (terminator conf=100, tail_score=-5.44837) mtlD GZ59_00940 mannitol-1-phosphate 5-dehydrogenase mtlR GZ59_00950 mannitol operon repressor - GZ59_00960 hypothetical protein (terminator conf=100, tail_score=-5.09245) >FliA alternative sigma factor [nhmmer score 14.9 E-value 0.27 Pos=-166] - GZ59_00970 methyl-accepting chemotaxis protein (terminator conf=95, tail_score=-3.18912) >ArcA [nhmmer score 10.3 E-value 5.9 Pos=-33], [nhmmer score 13.1 E-value 0.68 Pos=-92] >Fur [nhmmer score 9.2 E-value 26.0 Pos=-108] sodA GZ59_00980 manganese superoxide dismutase (terminator conf=77, tail_score=-3.48063) (terminator conf=100, tail_score=-5.66338) xylB GZ59_01020 xylulose kinase xylA GZ59_01030 xylose isomerase >CpxR [nhmmer score 7.0 E-value 130.0 Pos=-16] xylF GZ59_01040 D-xylose-binding periplasmic protein xylG GZ59_01050 D-xylose transport ATP-binding protein xylH GZ59_01060 xylose transport system permease xylR GZ59_01070 xylose operon regulatory protein - GZ59_01080 DJ-1-like protein >KdgR [nhmmer score 19.2 E-value 0.0086 Pos=-536] >ArgR [nhmmer score 13.1 E-value 0.88 Pos=-352] argG GZ59_01090 argininosuccinate synthetase (terminator conf=100, tail_score=-6.08563) >PhoP [nhmmer score 10.4 E-value 8.8 Pos=-194] expI GZ59_01100 Acyl-homoserine-lactone synthase >Fur [nhmmer score 11.8 E-value 3.3 Pos=-273] >KdgR [nhmmer score 9.5 E-value 15.0 Pos=-278] expR GZ59_01110 transcriptional activator protein ExpR - GZ59_01220 hypothetical protein - GZ59_01230 putative plasmid-related protein >FNR [nhmmer score 6.8 E-value 110.0 Pos=-467] >RhaS [nhmmer score 26.5 E-value 2.6e-05 Pos=-278] aldA GZ59_01240 aldehyde dehydrogenase A lctD GZ59_01250 L-lactate dehydrogenase - GZ59_01260 putative membrane protein (terminator conf=81, tail_score=-3.06501) >KdgR [nhmmer score 10.8 E-value 5.4 Pos=-139] - GZ59_01410 hypothetical protein - GZ59_01400 hypothetical protein - GZ59_01380 - - GZ59_01370 hypothetical protein >RpoN alternative sigma factor [nhmmer score 11.2 E-value 2.7 Pos=-84] >NtrC [nhmmer score 9.0 E-value 19.0 Pos=-145] - GZ59_01430 LysR-family transcriptional regulator - GZ59_01420 hypothetical protein (terminator conf=100, tail_score=-4.94992) >OxyR [nhmmer score 6.0 E-value 220.0 Pos=-15] secB GZ59_01830 protein-export protein gpsA GZ59_01840 glycerol-3-phosphate dehydrogenase [NAD(P)+] metR GZ59_01910 transcriptional activator protein >MetR [MAST score 1457.16 P-value 6.28e-06 Pos=-106] >MetJ [nhmmer score 11.0 E-value 3.3 Pos=-43], [nhmmer score 9.8 E-value 8.1 Pos=-35] metE GZ59_01920 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (terminator conf=100, tail_score=-5.32699) >FliA alternative sigma factor [nhmmer score 13.6 E-value 0.71 Pos=-264] - GZ59_01930 methyl-accepting chemotaxis protein (terminator conf=80, tail_score=-3.30243) >PhoP [nhmmer score 9.5 E-value 19.0 Pos=-404] >FliA alternative sigma factor [nhmmer score 9.5 E-value 16.0 Pos=-365] >AscG [nhmmer score 11.6 E-value 1.4 Pos=-360] - GZ59_01950 methyl-accepting chemotaxis protein (terminator conf=85, tail_score=-4.21462) (terminator conf=86, tail_score=-4.43208) - GZ59_01960 putative carboxymethylenebutenolidase >CRP [nhmmer score 9.1 E-value 17.0 Pos=-197] >FNR [nhmmer score 6.7 E-value 110.0 Pos=-196] >CpxR [nhmmer score 7.8 E-value 71.0 Pos=-126] udp GZ59_01970 uridine phosphorylase (terminator conf=81, tail_score=-3.99592) - GZ59_01980 hypothetical protein (terminator conf=100, tail_score=-4.96773) - GZ59_02020 GntR-family transcriptional regulator (terminator conf=100, tail_score=-4.07568) argE GZ59_02030 acetylornithine deacetylase >ArgR [nhmmer score 14.8 E-value 0.23 Pos=-158] argC GZ59_02040 putative N-acetyl-gamma-glutamyl-phosphate reductase argB GZ59_02050 acetylglutamate kinase argH GZ59_02060 argininosuccinate lyase (terminator conf=79, tail_score=-4.73677) (terminator conf=79, tail_score=-4.62069) >LexA [nhmmer score 8.1 E-value 43.0 Pos=-63] rmuC GZ59_02070 DNA recombination protein ubiE GZ59_02080 ubiquinone/menaquinone biosynthesis methyltransferase ubiJ GZ59_02090 Ubiquinone biosynthesis protein UbiJ ubiB GZ59_02100 putative ubiquinone biosynthesis protein tatA GZ59_02110 sec-independent protein translocase tatB GZ59_02120 sec-independent protein translocase tatC GZ59_02130 sec-independent protein translocase protein (terminator conf=100, tail_score=-5.7946) tatD GZ59_02140 deoxyribonuclease hemB GZ59_02150 delta-aminolevulinic acid dehydratase >NarP [nhmmer score 6.5 E-value 170.0 Pos=-51] ubiE GZ59_02080 ubiquinone/menaquinone biosynthesis methyltransferase ubiJ GZ59_02090 Ubiquinone biosynthesis protein UbiJ ubiB GZ59_02100 putative ubiquinone biosynthesis protein tatA GZ59_02110 sec-independent protein translocase tatB GZ59_02120 sec-independent protein translocase tatC GZ59_02130 sec-independent protein translocase protein (terminator conf=100, tail_score=-5.7946) tatD GZ59_02140 deoxyribonuclease hemB GZ59_02150 delta-aminolevulinic acid dehydratase (terminator conf=93, tail_score=-4.97461) fadA GZ59_02190 3-ketoacyl-CoA thiolase fadB GZ59_02200 fatty oxidation complex alpha subunit >FadR [nhmmer score 9.0 E-value 18.0 Pos=-158] >ArcA [nhmmer score 9.1 E-value 15.0 Pos=-124] pepQ GZ59_02210 proline dipeptidase - GZ59_02220 hypothetical protein trkH GZ59_02230 Trk system potassium uptake protein hemG GZ59_02240 protoporphyrinogen oxidase >RpoN alternative sigma factor [nhmmer score 14.7 E-value 0.18 Pos=-136] >NtrC [nhmmer score 9.1 E-value 18.0 Pos=-252] aapJ GZ59_02760 general L-amino ABC transporter binding protein aapQ GZ59_02750 L-amino acid ABC transporter permease protein aapM GZ59_02740 L-amino acid ABC transporter permease protein aapP GZ59_02730 L-amino acid ABC transporter ATP-binding protein (terminator conf=87, tail_score=-3.61178) (terminator conf=87, tail_score=-3.62518) - GZ59_02770 putative amino-acid transport system permease protein (terminator conf=100, tail_score=-2.72049) - GZ59_02780 putative cystine-binding periplasmic protein >FNR [nhmmer score 7.1 E-value 82.0 Pos=-597] - GZ59_02800 hypothetical protein - GZ59_02810 putative oxidoreductase >CpxR [nhmmer score 7.5 E-value 89.0 Pos=-104] dusB GZ59_02870 tRNA-dihydrouridine synthase B fis GZ59_02860 DNA-binding protein (terminator conf=100, tail_score=-5.33026) (terminator conf=81, tail_score=-3.53224) - GZ59_03060 hypothetical protein - GZ59_03070 hypothetical protein - GZ59_03080 transcriptional regulator, LysR family >CRP [nhmmer score 10.3 E-value 6.1 Pos=-605] >FNR [nhmmer score 8.2 E-value 34.0 Pos=-604] - GZ59_03090 putative membrane protein - GZ59_03100 putative HlyD family secretion protein - GZ59_03110 putative membrane protein - GZ59_03120 succinate-semialdehyde dehydrogenase [NADP+] (terminator conf=100, tail_score=-5.26119) gltD GZ59_03430 glutamate synthase [NADPH] small chain gltB GZ59_03440 glutamate synthase [NADPH] large chain >CRP [nhmmer score 7.4 E-value 65.0 Pos=-307] - GZ59_03450 hypothetical protein arcB GZ59_03460 aerobic respiration control sensor protein >MetR [nhmmer score 12.3 E-value 1.8 Pos=-269] metC GZ59_03850 cystathionine beta-lyase dctP GZ59_03880 TRAP transporter periplasmic substrate binding subunit DctP >CpxR [nhmmer score 7.6 E-value 84.0 Pos=-606] >KdgR [nhmmer score 13.0 E-value 1.0 Pos=-457] >CRP [nhmmer score 6.6 E-value 120.0 Pos=-312] exbB GZ59_03890 tonB-system energizer ExbB exbD GZ59_03900 biopolymer transport protein (terminator conf=76, tail_score=-4.78149) >RpoE alternative sigma factor [nhmmer score 10.7 E-value 5.6 Pos=-495] exbB GZ59_03890 tonB-system energizer ExbB exbD GZ59_03900 biopolymer transport protein (terminator conf=76, tail_score=-4.78149) >ScrR [nhmmer score 15.5 E-value 0.074 Pos=-80] >CRP [nhmmer score 5.8 E-value 240.0 Pos=-160] scrY GZ59_03940 sucrose porin scrA GZ59_03930 PTS system, sucrose-specific IIBC subunit scrB GZ59_03920 sucrose-6-phosphate hydrolase scrR GZ59_03910 sucrose operon repressor scrR GZ59_03910 sucrose operon repressor scrB GZ59_03920 sucrose-6-phosphate hydrolase scrA GZ59_03930 PTS system, sucrose-specific IIBC subunit scrY GZ59_03940 sucrose porin scrK GZ59_03950 fructokinase >ScrR [nhmmer score 10.8 E-value 2.6 Pos=-372] >CRP [nhmmer score 5.7 E-value 250.0 Pos=-281] - GZ59_03960 hypothetical protein - GZ59_03970 hypothetical protein - GZ59_03980 putative DNA-binding protein >NrdR [nhmmer score 7.4 E-value 53.0 Pos=-102], [nhmmer score 6.4 E-value 120.0 Pos=-133] >FNR [nhmmer score 9.0 E-value 18.0 Pos=-187] nrdD GZ59_04060 anaerobic ribonucleoside-triphosphate reductase nrdG GZ59_04050 anaerobic ribonucleoside-triphosphate reductase activating protein >RpoN alternative sigma factor [nhmmer score 12.8 E-value 0.83 Pos=-66] >NtrC [nhmmer score 9.1 E-value 19.0 Pos=-192] - GZ59_04100 circularly-permuted ATP-grasp protein - GZ59_04090 Alpha-E domain protein - GZ59_04080 transglutaminase - GZ59_04070 NTN hydrolase fold proteasome-like peptidase (terminator conf=81, tail_score=-3.54935) - GZ59_04110 putative endoribonuclease (terminator conf=93, tail_score=-5.1101) pyrI GZ59_04120 aspartate carbamoyltransferase regulatory subunit pyrB GZ59_04130 aspartate carbamoyltransferase catalytic subunit >PurR [nhmmer score 8.0 E-value 28.0 Pos=-174] >KdgR [nhmmer score 14.6 E-value 0.3 Pos=-42] tabA GZ59_04140 toxin-antitoxin biofilm protein TabA (terminator conf=100, tail_score=-4.04397) argI GZ59_04150 ornithine carbamoyltransferase chain I >ArgR [nhmmer score 15.6 E-value 0.13 Pos=-130] - GZ59_04160 hypothetical protein (terminator conf=100, tail_score=-5.88061) >Rob [nhmmer score 16.7 E-value 0.054 Pos=-98] - GZ59_04360 putative exported lipase - GZ59_04480 HNH endonuclease family protein >SgaR [nhmmer score 14.3 E-value 0.18 Pos=-119] - GZ59_04490 putative lipoprotein (terminator conf=93, tail_score=-3.26471) >FliA alternative sigma factor [nhmmer score 12.6 E-value 1.6 Pos=-65] >Fur [nhmmer score 8.9 E-value 31.0 Pos=-169] >CRP [nhmmer score 8.8 E-value 20.0 Pos=-287] - GZ59_04530 methyl-accepting chemotaxis protein (terminator conf=76, tail_score=-4.7497) - GZ59_04540 hypothetical protein rhaD GZ59_04550 rhamnulose-1-phosphate aldolase rhaA GZ59_04560 L-rhamnose isomerase rhaB GZ59_04570 rhamnulokinase >RhaS [nhmmer score 25.9 E-value 4e-05 Pos=-261] rhaS GZ59_04580 L-rhamnose operon regulatory protein rhaR GZ59_04590 L-rhamnose operon transcriptional activator rhaT GZ59_04670 L-rhamnose-proton symport >RhaS [nhmmer score 17.4 E-value 0.02 Pos=-228] - GZ59_04680 hypothetical protein - GZ59_04690 putative zinc-binding dehydrogenase >ArcA [nhmmer score 10.4 E-value 5.6 Pos=-145] >SlyA [nhmmer score 12.8 E-value 1.3 Pos=-198] - GZ59_04720 Type VI secretion system effector, Hcp1 family - GZ59_04710 hypothetical protein - GZ59_04700 putative membrane protein >NadR [nhmmer score 11.4 E-value 3.7 Pos=-32] nadR GZ59_04800 transcriptional regulator of NAD metabolism >FliA alternative sigma factor [nhmmer score 8.1 E-value 48.0 Pos=-75] - GZ59_04840 hypothetical protein >PhoP [nhmmer score 9.7 E-value 16.0 Pos=-414] >RcsB [nhmmer score 7.8 E-value 55.0 Pos=-306] osmY GZ59_04860 osmotically inducible protein Y - GZ59_04870 putative membrane protein - GZ59_04880 hypothetical protein rihB GZ59_04890 TatD-family deoxyribonuclease >CRP [nhmmer score 9.5 E-value 11.0 Pos=-182] nupX GZ59_04900 Nucleoside permease (terminator conf=91, tail_score=-3.90425) entD GZ59_04910 enterobactin synthetase component D (4'-phosphopantetheinyl transferase) (terminator conf=100, tail_score=-5.00616) - GZ59_04920 TonB-dependent siderophore receptor protein - GZ59_04930 putative iron transporter >Fur [nhmmer score 12.1 E-value 2.5 Pos=-263], [nhmmer score 11.1 E-value 5.8 Pos=-257], [nhmmer score 12.8 E-value 1.4 Pos=-61] >FNR [nhmmer score 12.7 E-value 0.93 Pos=-165] entC GZ59_04940 enterobactin synthetase component C (isochorismate synthase) entE GZ59_04950 enterobactin synthetase subunit E entB GZ59_04960 enterobactin synthetase component B (isochorismatase) entF GZ59_04970 enterobactin synthetase component F entA GZ59_04980 enterobactin synthetase component A (2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase) - GZ59_04990 putative non-ribosomal peptide synthetase - GZ59_05000 putative non-ribosomal peptide synthetase - GZ59_05010 hypothetical protein - GZ59_05020 hypothetical protein >CRP [nhmmer score 6.6 E-value 120.0 Pos=-687] >FNR [nhmmer score 9.7 E-value 11.0 Pos=-102] fom1 GZ59_05030 phosphoenolpyruvate phosphomutase fom2 GZ59_05040 phosphonopyruvate decarboxylase - GZ59_05050 putative 2-hydroxy-3-oxopropionate reductase phnG GZ59_05060 putative phosphonate metabolism protein - GZ59_05070 phosphonate C-P lyase system protein PhnH phnI GZ59_05080 putative phosphonate metabolism protein PhnI phnJ GZ59_05090 putative phosphonate metabolism protein PhnJ phnK GZ59_05100 putative phosphonate ABC transporter ATP-binding protein - GZ59_05110 phosphonate C-P lyase system protein PhnL phnM GZ59_05120 putative phosphonate metabolism protein PhnM phnN GZ59_05130 putative phosphonate metabolism protein PhnN phnP GZ59_05140 putative phosphonate metabolism protein PhnP >Rob [nhmmer score 12.0 E-value 2.0 Pos=-334] >RcsB [nhmmer score 7.7 E-value 58.0 Pos=-213] >PmrA [nhmmer score 11.0 E-value 5.0 Pos=-191] wcaJ GZ59_05150 UDP-glucose lipid carrier transferase - GZ59_05160 putative capsular polysaccharide biosynthesis protein - GZ59_05170 putative capsular polysaccharide export protein - GZ59_05180 putative capsular polysaccharide biosynthesis protein - GZ59_05190 putative capsular polysaccharide bisynthesis protein - GZ59_05200 putative capsular polysaccharide bisynthesis protein - GZ59_05210 putative capsular polysaccharide bisynthesis glycosyl transferase - GZ59_05220 glycosyl transferase group 1 - GZ59_05230 alpha-D-GlcNAc alpha-1,2-L-rhamnosyltransferase - GZ59_05240 putative membrane protein - GZ59_05250 putative exported protein - GZ59_05260 putative capsular polysacharide biosynthesis transferase - GZ59_05350 hypothetical protein - GZ59_05360 cytochrome c biogenesis protein transmembrane region cutA GZ59_05370 periplasmic divalent cation tolerance protein (terminator conf=100, tail_score=-3.03781) dcuA GZ59_05380 anaerobic C4-dicarboxylate transporter (terminator conf=91, tail_score=-5.04249) aspA1_2 GZ59_05390 aspartate ammonia-lyase >CRP [nhmmer score 7.3 E-value 69.0 Pos=-245] fxsA GZ59_05400 FxsA cytoplasmic membrane protein (terminator conf=100, tail_score=-4.32579) >RpoH heat shock alternative sigma factor [nhmmer score 16.4 E-value 0.055 Pos=-190] fxsA GZ59_05400 FxsA cytoplasmic membrane protein (terminator conf=100, tail_score=-4.32579) >RpoH heat shock alternative sigma factor [nhmmer score 17.2 E-value 0.024 Pos=-127] groES GZ59_05410 10 kDa chaperonin groEL GZ59_05420 60 kDa chaperonin (terminator conf=100, tail_score=-5.64274) (terminator conf=100, tail_score=-5.37043) plsB GZ59_05450 glycerol-3-phosphate acyltransferase >LexA [nhmmer score 8.8 E-value 26.0 Pos=-46], [nhmmer score 10.7 E-value 5.8 Pos=-25] lexA GZ59_05470 LexA repressor >UxuR [nhmmer score 14.7 E-value 0.19 Pos=-101] exuR GZ59_05600 exu regulon transcriptional regulator (terminator conf=79, tail_score=-3.04398) exuT GZ59_05610 galacturonate transporter >UxuR [nhmmer score 9.6 E-value 9.9 Pos=-249] >CRP [nhmmer score 6.8 E-value 100.0 Pos=-229] uxaC GZ59_05620 uronate isomerase (terminator conf=93, tail_score=-2.67709) >KdgR [nhmmer score 19.6 E-value 0.0067 Pos=-71] - GZ59_05650 Imp-YgjV family inner membrane protein >CRP [nhmmer score 6.1 E-value 180.0 Pos=-263] alx GZ59_05690 integral membrane protein, TerC family (terminator conf=100, tail_score=-3.50722) fadH GZ59_05730 2,4-dienoyl-CoA reductase, NADPH dependent >FadR [nhmmer score 8.6 E-value 25.0 Pos=-195] >ArcA [nhmmer score 8.5 E-value 24.0 Pos=-148] >CRP [nhmmer score 6.2 E-value 170.0 Pos=-128] - GZ59_05740 hypothetical protein >CueR [nhmmer score 16.5 E-value 0.057 Pos=-59] - GZ59_05770 putative exported protein (terminator conf=100, tail_score=-5.26119) (terminator conf=100, tail_score=-6.25242) >CRP [nhmmer score 7.8 E-value 46.0 Pos=-186] casF GZ59_05780 PTS system, beta-glucoside-specific IIABC subunit (terminator conf=100, tail_score=-4.386) >CRP [nhmmer score 6.4 E-value 140.0 Pos=-238] casB GZ59_05790 6-phospho-beta-glucosidase (terminator conf=100, tail_score=-4.23045) argR GZ59_05870 arginine repressor >ArgR [nhmmer score 14.8 E-value 0.25 Pos=-424] >ArcA [nhmmer score 10.1 E-value 7.0 Pos=-298] >PhoP [nhmmer score 11.9 E-value 2.9 Pos=-67] mdh GZ59_05880 malate dehydrogenase (terminator conf=100, tail_score=-5.45813) >RpoE alternative sigma factor [nhmmer score 9.1 E-value 19.0 Pos=-191] greA GZ59_05990 transcription elongation factor (terminator conf=89, tail_score=-4.52589) >RpoH heat shock alternative sigma factor [nhmmer score 16.3 E-value 0.06 Pos=-122] rrmJ GZ59_06010 ribosomal RNA large subunit methyltransferase ftsH GZ59_06020 ATP-dependent metalloprotease FtsH (terminator conf=100, tail_score=-5.03715) dhpS GZ59_06030 dihydropteroate synthase mrsA GZ59_06040 phosphoglucosamine mutase >PhoP [nhmmer score 9.5 E-value 18.0 Pos=-121] evr GZ59_06090 virulence regulator - GZ59_06280 hypothetical protein >CRP [nhmmer score 12.7 E-value 0.91 Pos=-335], [nhmmer score 5.8 E-value 230.0 Pos=-283] >DeoR [nhmmer score 9.0 E-value 25.0 Pos=-331] deoC GZ59_06300 deoxyribose-phosphate aldolase deoA GZ59_06310 thymidine phosphorylase deoB GZ59_06320 phosphopentomutase deoD GZ59_06330 purine nucleoside phosphorylase (terminator conf=85, tail_score=-3.5032) >Fur [nhmmer score 12.3 E-value 2.1 Pos=-47], [nhmmer score 18.1 E-value 0.024 Pos=-41] fcuA GZ59_06340 putative ferric siderophore TonB-dependent receptor (terminator conf=93, tail_score=-4.21827) >Fur [nhmmer score 11.6 E-value 3.7 Pos=-41] >FNR [nhmmer score 6.9 E-value 93.0 Pos=-62] - GZ59_06450 putative membrane protein fucO GZ59_06490 lactaldehyde reductase >Rob [nhmmer score 10.9 E-value 4.5 Pos=-313] gcvT GZ59_06500 glycine cleavage system T protein (aminomethyltransferase) gcvH GZ59_06510 glycine cleavage system H protein (terminator conf=100, tail_score=-5.31091) gcvP GZ59_06520 putative glycine cleavage system P protein (glycine dehydrogenase [decarboxylating]) (terminator conf=100, tail_score=-4.56335) >RafR [nhmmer score 13.9 E-value 0.24 Pos=-70], [nhmmer score 14.2 E-value 0.19 Pos=-91] >CRP [nhmmer score 5.6 E-value 260.0 Pos=-111] rafA GZ59_06610 alpha-galactosidase rafB GZ59_06600 putative raffinose permease (terminator conf=100, tail_score=-3.95378) (terminator conf=100, tail_score=-3.59979) rafR GZ59_06620 LysR-family raffinose operon repressor - GZ59_06630 Putative metal dependent phosphohydrolase of HD superfamily >FabR [nhmmer score 15.9 E-value 0.075 Pos=-156] hlyIII GZ59_06640 hemolysin III family protein >SlyA [nhmmer score 10.5 E-value 7.5 Pos=-448] - GZ59_06730 putative exported protein (terminator conf=100, tail_score=-5.38054) - GZ59_06890 hypothetical protein >FNR [nhmmer score 6.6 E-value 120.0 Pos=-42] yjcD GZ59_06900 xanthine/uracil permease family protein (terminator conf=100, tail_score=-2.7563) >Fur [nhmmer score 12.9 E-value 1.4 Pos=-210] - GZ59_06920 two component transcriptional regulator, winged helix family - GZ59_06930 two component system sensor kinase >FNR [nhmmer score 7.9 E-value 44.0 Pos=-170] >Fur [nhmmer score 12.6 E-value 1.7 Pos=-98] flp GZ59_06940 Flp/Fap pilin component tadV GZ59_06950 prepilin peptidase rcpC GZ59_06960 putative exported protein rcpA GZ59_06970 Flp pilus assembly secretin rcpB GZ59_06980 putative lipoprotein tadZ GZ59_06990 Flp pilus assembly protein TadZ tadA GZ59_07000 Flp pilus assembly ATPase TadA tadB GZ59_07010 Flp pilus assembly protein TadB tadC GZ59_07020 putative type IV pilus protein tadD GZ59_07030 putative membrane protein tadE GZ59_07040 Flp pilus assembly protein TadE - GZ59_07050 putative membrane protein tadG GZ59_07060 Flp pilus assembly protein TadG - GZ59_07070 putative outer membrane protein >RhaS [nhmmer score 29.0 E-value 4.3e-06 Pos=-287] rhiE GZ59_07120 rhamnogalacturonate lyase (terminator conf=83, tail_score=-3.01918) actP GZ59_07130 acetate permease - GZ59_07140 putative membrane protein acsA GZ59_07150 acetate/CoA ligase >CRP [nhmmer score 8.9 E-value 20.0 Pos=-721] >OxyR [nhmmer score 8.0 E-value 48.0 Pos=-636] >ArcA [nhmmer score 10.2 E-value 6.4 Pos=-469] >CpxR [nhmmer score 7.1 E-value 130.0 Pos=-356] hexY GZ59_07160 global regulatory protein >FliA alternative sigma factor [nhmmer score 11.6 E-value 3.4 Pos=-581] hexY GZ59_07160 global regulatory protein >PurR [nhmmer score 9.0 E-value 12.0 Pos=-621] >RbsR [nhmmer score 20.1 E-value 0.0024 Pos=-438] >Rob [nhmmer score 11.2 E-value 3.6 Pos=-211] - GZ59_07170 TonB-dependent siderophore receptor (terminator conf=100, tail_score=-5.0133) - GZ59_07180 FecI-like RNA polymerase sigma factor - GZ59_07190 FecR-like transmembrane sensor - GZ59_07200 putative membrane protein (terminator conf=93, tail_score=-2.93991) - GZ59_07210 putative membrane protein (terminator conf=100, tail_score=-4.68994) >Fur [nhmmer score 13.2 E-value 1.1 Pos=-44] - GZ59_07180 FecI-like RNA polymerase sigma factor - GZ59_07190 FecR-like transmembrane sensor - GZ59_07200 putative membrane protein (terminator conf=93, tail_score=-2.93991) - GZ59_07210 putative membrane protein (terminator conf=100, tail_score=-4.68994) (terminator conf=100, tail_score=-3.56937) togT GZ59_07220 oligogalacturonide transporter >KdgR [nhmmer score 14.7 E-value 0.27 Pos=-366], [nhmmer score 10.5 E-value 7.0 Pos=-344] >FNR [nhmmer score 7.4 E-value 62.0 Pos=-227] - GZ59_07230 putative membrane protein >RpoE alternative sigma factor [nhmmer score 6.6 E-value 130.0 Pos=-94] - GZ59_07400 Transcriptional regulator, AbiEi antitoxin, Type IV TA system - GZ59_07410 Nucleotidyl transferase AbiEii toxin, Type IV TA system >FNR [nhmmer score 7.2 E-value 74.0 Pos=-157] - GZ59_07440 hypothetical protein - GZ59_07430 addiction module toxin, RelE/StbE family (terminator conf=81, tail_score=-3.0263) (terminator conf=80, tail_score=-4.88228) - GZ59_07570 integrase family protein >FNR [nhmmer score 7.6 E-value 52.0 Pos=-500] - GZ59_07580 regulatory protein (terminator conf=83, tail_score=-5.46129) (terminator conf=100, tail_score=-6.07374) (terminator conf=82, tail_score=-4.59773) >FNR [nhmmer score 6.5 E-value 130.0 Pos=-270] - GZ59_07600 hypothetical protein - GZ59_07590 putative exported protein (terminator conf=93, tail_score=-4.94487) (terminator conf=88, tail_score=-3.45131) >RpoE alternative sigma factor [nhmmer score 7.3 E-value 75.0 Pos=-105] smpA GZ59_07740 putative outer membrane lipopotein (small protein A) (terminator conf=100, tail_score=-5.24129) >LexA [nhmmer score 12.8 E-value 1.2 Pos=-40], [nhmmer score 13.2 E-value 0.85 Pos=-62] recN GZ59_07750 DNA repair protein (terminator conf=81, tail_score=-3.20322) smpA GZ59_07740 putative outer membrane lipopotein (small protein A) (terminator conf=100, tail_score=-5.24129) >RpoH heat shock alternative sigma factor [nhmmer score 19.6 E-value 0.004 Pos=-70] grpE GZ59_07770 co-chaperone GrpE (terminator conf=100, tail_score=-5.76237) (terminator conf=83, tail_score=-3.08679) (terminator conf=76, tail_score=-4.84359) >PdhR [nhmmer score 15.3 E-value 0.12 Pos=-86] >OxyR [nhmmer score 9.5 E-value 14.0 Pos=-83] >Fur [nhmmer score 13.7 E-value 0.74 Pos=-58] mntH GZ59_07780 Mn2+/Fe2+ transporter, NRAMP family (terminator conf=91, tail_score=-3.82811) >FNR [nhmmer score 7.1 E-value 82.0 Pos=-214] - GZ59_07840 putative sugar ABC transporter, periplasmic binding protein (terminator conf=100, tail_score=-3.48593) - GZ59_07850 putative sugar ABC transporter, permease protein - GZ59_07860 putative sugar ABC transporter, permease protein - GZ59_07870 putative sugar ABC transporter ATP-binding protein (terminator conf=87, tail_score=-4.35116) >FNR [nhmmer score 6.8 E-value 100.0 Pos=-222] - GZ59_07880 arabinogalactan endo-beta-1,4-galactanase >CpxR [nhmmer score 9.6 E-value 18.0 Pos=-210] - GZ59_07920 ABC transporter, periplasmic binding protein - GZ59_07910 ABC transporter permease protein - GZ59_07900 ABC transporter, ATP-binding protein - GZ59_07890 LacI-family transcriptional regulator >CRP [nhmmer score 9.5 E-value 11.0 Pos=-229] >FNR [nhmmer score 7.8 E-value 46.0 Pos=-228] bglH GZ59_07950 PTS system beta-glucoside-specific EIIBCA component bglD GZ59_07940 beta-glucosidase bglJ GZ59_07930 transcriptional antiterminator, BglJ (terminator conf=100, tail_score=-6.02919) tktA1_1 GZ59_07970 transketolase 1 talA GZ59_07980 transaldolase A (terminator conf=83, tail_score=-3.60112) rpiB GZ59_07990 ribose 5-phosphate isomerase >CRP [nhmmer score 7.4 E-value 64.0 Pos=-117] - GZ59_08000 hypothetical protein - GZ59_08010 putative transport protein dhaK GZ59_08020 dihydroxyacetone kinase tpiA_1 GZ59_08030 putative triosephosphate isomerase - GZ59_08040 Sugar phosphate isomerase - GZ59_08050 hypothetical protein - GZ59_08060 putative transcriptional regulator (terminator conf=79, tail_score=-3.09919) iutA GZ59_08120 TonB-dependent ferric aerobactin receptor >Fur [nhmmer score 9.8 E-value 16.0 Pos=-177], [nhmmer score 8.8 E-value 34.0 Pos=-159] - GZ59_08130 TonB family protein - GZ59_08140 TonB-dependent receptor plug (terminator conf=100, tail_score=-4.30014) - GZ59_08150 putative zinc protease - GZ59_08160 putative ABC transporter ATP-binding protein - GZ59_08170 hypothetical protein - GZ59_08180 hypothetical protein (terminator conf=100, tail_score=-4.13561) - GZ59_08190 hypothetical protein (terminator conf=81, tail_score=-3.99407) >Mlc [nhmmer score 10.3 E-value 10.0 Pos=-319] ptsH GZ59_08300 PTS system phosphocarrier protein ptsI GZ59_08290 phosphoenolpyruvate-protein phosphotransferase crr GZ59_08280 PTS system, glucose-specific IIa component (terminator conf=100, tail_score=-4.55128) >RcsB [nhmmer score 7.4 E-value 72.0 Pos=-115] cysK GZ59_08310 cysteine synthase A (terminator conf=100, tail_score=-5.24129) >NsrR [nhmmer score 16.3 E-value 0.062 Pos=-357] tehB GZ59_08380 putative tellurite resistance protein (terminator conf=100, tail_score=-4.99035) >RpoN alternative sigma factor [nhmmer score 14.6 E-value 0.2 Pos=-71] norV GZ59_08400 anaerobic nitric oxide reductase flavorubredoxin norW GZ59_08390 NADH:flavoruberedoxin reductase (terminator conf=100, tail_score=-3.73775) (terminator conf=100, tail_score=-3.73775) norW GZ59_08390 NADH:flavoruberedoxin reductase norV GZ59_08400 anaerobic nitric oxide reductase flavorubredoxin >NorR [nhmmer score 12.6 E-value 1.6 Pos=-63], [nhmmer score 12.0 E-value 2.5 Pos=-38], [nhmmer score 10.8 E-value 5.9 Pos=-18] norR GZ59_08410 Anaerobic nitric oxide reductase transcription regulator NorR >Fur [nhmmer score 12.3 E-value 2.1 Pos=-336] fumA GZ59_08420 fumarate hydratase class I, aerobic >FNR [nhmmer score 9.7 E-value 11.0 Pos=-389] >CpxR [nhmmer score 7.5 E-value 92.0 Pos=-402] - GZ59_08520 putative component of polysulfide reductase - GZ59_08510 putative component of polysulfide reductase - GZ59_08500 putative membrane protein - GZ59_08490 FMN-binding domain protein - GZ59_08480 putative flavoprotein subunit of a reductase (terminator conf=100, tail_score=-3.83026) (terminator conf=95, tail_score=-3.18571) (terminator conf=100, tail_score=-5.80003) - GZ59_08530 alpha/beta hydrolase fold protein >CRP [nhmmer score 6.2 E-value 160.0 Pos=-220] - GZ59_08540 LysR-family transcriptional regulator rspA GZ59_08550 Bifunctional D-altronate/D-mannonate dehydratase rspB GZ59_08560 L-gulonate dehydrogenase, COG1063 family >RspR [nhmmer score 20.2 E-value 0.0029 Pos=-57] rspA GZ59_08550 Bifunctional D-altronate/D-mannonate dehydratase rspB GZ59_08560 L-gulonate dehydrogenase, COG1063 family >MetJ [nhmmer score 11.2 E-value 2.8 Pos=-50] - GZ59_08680 Biopolymer transport protein ExbD/TolR - GZ59_08670 TonB-like protein - GZ59_08660 TonB-dependent receptor >CRP [nhmmer score 9.2 E-value 15.0 Pos=-256] >BaeR [nhmmer score 13.6 E-value 0.31 Pos=-375] >RcsB [MAST score 1983.16 P-value 9.95e-10 Pos=-375] mdtG GZ59_08690 multidrug resistance efflux transport >SlyA [nhmmer score 11.5 E-value 3.3 Pos=-34] - GZ59_08730 putative acetyltransferase - GZ59_08720 LuxR-family transcriptional regulator - GZ59_08710 permease (terminator conf=79, tail_score=-5.26875) - GZ59_08780 putative fimbrial protein - GZ59_08790 putative fimbrial adhesin fimC GZ59_08800 periplasmic chaperone for type 1 fimbriae fimD GZ59_08810 fimbrial biogenesis outer membrane usher protein fimA GZ59_08820 type 1 fimbriae major subunit protein >PhoP [nhmmer score 9.6 E-value 17.0 Pos=-389] >FNR [nhmmer score 7.0 E-value 89.0 Pos=-355] >KdgR [nhmmer score 10.6 E-value 6.3 Pos=-265] - GZ59_08830 CadC family transcriptional regulator - GZ59_08840 putative exported protein >CueR [nhmmer score 21.0 E-value 0.002 Pos=-73] >CRP [nhmmer score 6.1 E-value 170.0 Pos=-143] >FNR [nhmmer score 12.6 E-value 1.1 Pos=-142] - GZ59_08870 hypothetical protein (terminator conf=100, tail_score=-3.90744) >RcsB [nhmmer score 11.1 E-value 4.1 Pos=-29] pilL GZ59_09180 putative Type IV pilus protein PilL pilM GZ59_09190 putative Type IV pilus protein PilM pilN GZ59_09200 putative Type IV pilus protein PilN pilO GZ59_09210 Pilin accessory protein (PilO) pilP GZ59_09220 putative Type IV pilus protein PilP pilQ GZ59_09230 putative Type IV pilus nucleotide-binding protein pilR GZ59_09240 putative type IV pilus protein PilR pilS GZ59_09250 putative type IV pilus prepilin pilT GZ59_09260 putative Type IV pilus protein PilT pilU GZ59_09270 putative prepilin peptidase pilV GZ59_09280 putative Type IV pilus prepilin protein (terminator conf=100, tail_score=-3.61398) cfa8B GZ59_09850 putative oxidoreductase cfa8A GZ59_09860 putative oxidoreductase cfa7 GZ59_09870 type I polyketide synthase cfa6 GZ59_09880 type I polyketide synthase cfa5 GZ59_09890 coronafacic acid synthetase, ligase component cfa4 GZ59_09900 coronafacic acid synthetase component cfa3 GZ59_09910 Cfa-beta-ketoacylsynthase cfa2 GZ59_09920 coronafacic acid dehydratase cfa1 GZ59_09930 Cfa-acyl carrier protein cfl GZ59_09940 coronafacate ligase >RcsB [nhmmer score 9.2 E-value 18.0 Pos=-89] - GZ59_09950 LysR-family transcriptional regulator >SlyA [nhmmer score 8.0 E-value 50.0 Pos=-73] - GZ59_09990 putative phage integrase (terminator conf=76, tail_score=-3.09581) (terminator conf=100, tail_score=-3.97368) - GZ59_10020 - - GZ59_10040 putative TetR-family transcriptional regulator >Fur [nhmmer score 10.1 E-value 13.0 Pos=-63] >FNR [nhmmer score 7.0 E-value 86.0 Pos=-55] - GZ59_10050 hypothetical protein - GZ59_10060 hypothetical protein (terminator conf=100, tail_score=-5.66684) mutH GZ59_10190 DNA mismatch repair protein >CRP [nhmmer score 6.8 E-value 99.0 Pos=-579] rppH GZ59_10200 RNA pyrophosphohydrolase ptsP GZ59_10210 phosphoenolpyruvate-protein phosphotransferase - GZ59_10320 putative lacI-family transcriptional regulator >CRP [nhmmer score 5.9 E-value 220.0 Pos=-92] lfeW GZ59_10330 mandelate racemase/muconate lactonizing protein - GZ59_10580 putative GTP cyclohydrolase I >RcsB [nhmmer score 7.3 E-value 80.0 Pos=-217] >KdgR [nhmmer score 9.6 E-value 14.0 Pos=-196] >Fur [nhmmer score 11.1 E-value 5.5 Pos=-192] rsmB GZ59_10600 - aepA GZ59_10610 exoenzymes regulatory protein >GalR [nhmmer score 11.4 E-value 2.1 Pos=-49] rsmB GZ59_10600 - aepA GZ59_10610 exoenzymes regulatory protein - GZ59_10960 hypothetical protein >CRP [nhmmer score 7.3 E-value 69.0 Pos=-712] - GZ59_10980 putative 3-polyprenyl-4-hydroxybenzoate carboxy-lyase - GZ59_10990 hypothetical protein (terminator conf=82, tail_score=-4.69324) >Fur [nhmmer score 8.7 E-value 36.0 Pos=-213] fecA GZ59_11050 iron(III) dicitrate transport protein FecA fecR GZ59_11060 iron(III) dicitrate sensor protein fecI GZ59_11070 RNA polymerase sigma factor >Fur [nhmmer score 9.8 E-value 15.0 Pos=-236] - GZ59_11080 cyclic-di-GMP phosphodiesterase phnA GZ59_11090 putative phosphonoacetate hydrolase (terminator conf=78, tail_score=-4.64766) - GZ59_11100 lytic murein transglycosylase B >UxuR [nhmmer score 9.9 E-value 7.4 Pos=-110] >CpxR [nhmmer score 9.1 E-value 25.0 Pos=-19] uxuA GZ59_11190 mannonate dehydratase (terminator conf=89, tail_score=-3.08438) (terminator conf=100, tail_score=-4.16205) - GZ59_11200 Pectate lyase >PhoP [nhmmer score 10.6 E-value 7.5 Pos=-688], [nhmmer score 10.3 E-value 9.4 Pos=-671], [nhmmer score 8.7 E-value 32.0 Pos=-657] pehA GZ59_11210 endo-polygalacturonase - GZ59_11250 - >SlyA [nhmmer score 11.7 E-value 2.8 Pos=-382] - GZ59_11280 antimicrobial peptide efflux ABC transporter permease/ATPase >Rob [nhmmer score 11.4 E-value 3.2 Pos=-333] >RcsB [nhmmer score 6.8 E-value 120.0 Pos=-296] >CRP [nhmmer score 6.7 E-value 110.0 Pos=-75] >FliA alternative sigma factor [nhmmer score 9.6 E-value 15.0 Pos=-60] - GZ59_11320 methyl-accepting chemotaxis protein (terminator conf=85, tail_score=-3.54784) sbcC GZ59_11350 exonuclease - GZ59_11360 nuclease SbcCD, D subunit >PhoB [nhmmer score 15.8 E-value 0.097 Pos=-77] phoB GZ59_11370 phosphate regulon response regulator phoR GZ59_11380 phosphate regulon histidine kinase - GZ59_11390 putative phosphate binding protein >MetR [nhmmer score 10.4 E-value 7.8 Pos=-204] >MetJ [nhmmer score 14.0 E-value 0.32 Pos=-129] metE2 GZ59_11400 putative methionine synthase (terminator conf=100, tail_score=-5.25803) (terminator conf=76, tail_score=-4.8667) (terminator conf=79, tail_score=-5.21709) >OxyR [nhmmer score 6.3 E-value 170.0 Pos=-120] tsaA GZ59_11440 peroxiredoxin (terminator conf=100, tail_score=-5.27335) >RpoH heat shock alternative sigma factor [nhmmer score 18.1 E-value 0.016 Pos=-201] clpP GZ59_11760 ATP-dependent Clp protease proteolytic subunit clpX GZ59_11770 ATP-dependent Clp protease ATP-binding subunit (terminator conf=100, tail_score=-5.04249) lon GZ59_11790 ATP-dependent protease Lon (terminator conf=100, tail_score=-5.93809) hupB GZ59_11800 DNA-binding protein HU-beta (terminator conf=100, tail_score=-5.27476) >RpoH heat shock alternative sigma factor [nhmmer score 20.3 E-value 0.0022 Pos=-116] lon GZ59_11790 ATP-dependent protease Lon (terminator conf=100, tail_score=-5.93809) hupB GZ59_11800 DNA-binding protein HU-beta (terminator conf=100, tail_score=-5.27476) >FadR [nhmmer score 8.9 E-value 20.0 Pos=-43] fadM GZ59_11830 Long-chain acyl-CoA thioesterase FadM (terminator conf=77, tail_score=-5.00138) (terminator conf=100, tail_score=-5.48514) - GZ59_11840 hypothetical protein - GZ59_11850 putative pyridoxal-phosphate dependent protein >FNR [nhmmer score 6.9 E-value 94.0 Pos=-217] - GZ59_11860 AsnC-family transcriptional regulator mdlA GZ59_11870 ATP-binding component of ABC transporter mdlB GZ59_11880 ABC transporter related protein >NtrC [nhmmer score 11.0 E-value 4.0 Pos=-228] >RpoN alternative sigma factor [nhmmer score 12.8 E-value 0.79 Pos=-110] glnK GZ59_11890 nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB amtB GZ59_11900 putative ammonium transporter (terminator conf=100, tail_score=-5.08255) >Zur [nhmmer score 19.5 E-value 0.0048 Pos=-32] rpmE2 GZ59_11980 putative 50S ribosomal protein L31 (second copy) rpmJ2 GZ59_11970 putative 50S ribosomal protein L36 (second copy) (terminator conf=100, tail_score=-5.0133) acrB GZ59_11990 Multidrug efflux pump subunit AcrB acrA GZ59_12000 Multidrug efflux pump MFP subunit >AcrR [nhmmer score 25.2 E-value 8.2e-05 Pos=-14] acrR GZ59_12010 putative acrAB operon repressor >RpoH heat shock alternative sigma factor [nhmmer score 20.3 E-value 0.003 Pos=-85] htpG GZ59_12090 HSP90 chaperone protein (terminator conf=100, tail_score=-3.42768) >GlpR [nhmmer score 7.7 E-value 60.0 Pos=-88] yjiY GZ59_12170 putative carbon starvation protein (terminator conf=100, tail_score=-5.36441) - GZ59_12180 hypothetical protein - GZ59_12190 hypothetical protein (terminator conf=79, tail_score=-2.53273) >SdaR [nhmmer score 11.1 E-value 2.5 Pos=-140] >KdgR [nhmmer score 16.3 E-value 0.083 Pos=-38] pehN GZ59_12200 putative polygalacturonase (terminator conf=100, tail_score=-3.73775) (terminator conf=78, tail_score=-3.17571) - GZ59_12210 hypothetical protein - GZ59_12220 putative exported protein (terminator conf=86, tail_score=-2.55085) copA GZ59_12230 copper-transporting P-type ATPase >CueR [nhmmer score 13.5 E-value 0.53 Pos=-32] cueR GZ59_12240 transcriptional regulator, MerR family >RcsB [nhmmer score 8.6 E-value 28.0 Pos=-345] nrdA GZ59_12280 ribonucleotide reductase of class Ia (aerobic) subunit alpha (terminator conf=100, tail_score=-3.08032) (terminator conf=100, tail_score=-5.75342) nrdB GZ59_12270 ribonucleoside-diphosphate reductase 1 beta chain (terminator conf=100, tail_score=-4.4261) (terminator conf=100, tail_score=-5.63517) tyrP GZ59_12460 tyrosine-specific transport protein >TyrR [nhmmer score 13.5 E-value 0.66 Pos=-129] - GZ59_12470 putative molybdopterin binding protein (terminator conf=83, tail_score=-3.61398) >Fur [nhmmer score 15.0 E-value 0.27 Pos=-214] >FNR [nhmmer score 10.9 E-value 4.0 Pos=-103] hybO GZ59_12530 hydrogenase-2 small subunit hybA GZ59_12540 hydrogenase-2 operon protein hybB GZ59_12550 putative Ni/Fe-hydrogenase 2 B-type cytochrome subunit hybC GZ59_12560 hydrogenase-2 large subunit hybD GZ59_12570 hydrogenase 2 maturation protease hybE GZ59_12580 hydrogenase-2 component protein (terminator conf=100, tail_score=-4.13014) (terminator conf=100, tail_score=-4.85267) hypE GZ59_12590 hydrogenase isoenzymes formation protein HypE hypD GZ59_12600 hydrogenase isoenzymes formation protein HypD hypC GZ59_12610 hydrogenase isoenzymes formation protein HypC hypB GZ59_12620 hydrogenase isoenzymes nickel incorporation protein hypA GZ59_12630 putative regulator of hydrogenase isoenzymes >SlyA [nhmmer score 8.8 E-value 27.0 Pos=-163] >NarP [nhmmer score 6.5 E-value 170.0 Pos=-52] hyfR GZ59_12640 hydrogenase-4 transcriptional activator (terminator conf=100, tail_score=-2.73994) (terminator conf=100, tail_score=-3.57263) hycI GZ59_12650 hydrogenase 3 maturation protease hyfJ GZ59_12660 hydrogenase-4 component J hyfI GZ59_12670 hydrogenase-4 component I hyfH GZ59_12680 hydrogenase-4 component H hyfG GZ59_12690 hydrogenase-4 component G hyfF GZ59_12700 hydrogenase-4 component F hyfE GZ59_12710 hydrogenase-4 component E hyfD GZ59_12720 hydrogenase-4 component D hyfC GZ59_12730 hydrogenase-4 component C hyfB GZ59_12740 hydrogenase-4 component B hyfA GZ59_12750 hydrogenase-4 component A >HyfR [nhmmer score 7.5 E-value 74.0 Pos=-390], [nhmmer score 10.0 E-value 10.0 Pos=-139] hydN GZ59_12760 electron transport protein fdhF GZ59_12770 formate dehydrogenase H hypF GZ59_12780 hydrogenase maturation protein hoxN GZ59_12790 high-affinity nickel transport protein (terminator conf=77, tail_score=-5.055) >RpoN alternative sigma factor [nhmmer score 11.0 E-value 3.2 Pos=-71] hydN GZ59_12760 electron transport protein fdhF GZ59_12770 formate dehydrogenase H hypF GZ59_12780 hydrogenase maturation protein hoxN GZ59_12790 high-affinity nickel transport protein (terminator conf=77, tail_score=-5.055) purN GZ59_12800 phosphoribosylglycinamide formyltransferase purM GZ59_12810 phosphoribosylformylglycinamidine cyclo-ligase >PurR [nhmmer score 10.5 E-value 3.7 Pos=-239] upp GZ59_12820 uracil phosphoribosyltransferase (terminator conf=100, tail_score=-5.78622) >PurR [nhmmer score 9.1 E-value 12.0 Pos=-197] - GZ59_12920 putative membrane protein tmcA GZ59_12930 tRNA(Met) cytidine acetyltransferase TmcA (terminator conf=100, tail_score=-4.2704) atoB GZ59_13080 acetyl-CoA acetyltransferase atoA GZ59_13090 acetate CoA-transferase beta subunit atoD GZ59_13100 acetate CoA-transferase alpha subunit - GZ59_13110 hypothetical protein - GZ59_13120 hypothetical protein citM_1 GZ59_13130 Mg(2+)/citrate complex transporter >DcuR [nhmmer score 13.5 E-value 0.54 Pos=-403] >CRP [nhmmer score 5.6 E-value 260.0 Pos=-165] >FNR [nhmmer score 8.3 E-value 32.0 Pos=-23] - GZ59_13140 LysR-family transcriptional regulator >ArcA [nhmmer score 10.8 E-value 4.2 Pos=-174] lipA GZ59_13240 lipoic acid synthetase (terminator conf=90, tail_score=-4.40237) >SlyA [nhmmer score 8.9 E-value 26.0 Pos=-160] dacA GZ59_13270 D-alanine carboxypeptidase (terminator conf=100, tail_score=-3.8637) - GZ59_13260 hypothetical protein lipB GZ59_13250 lipoate-protein ligase B >NtrC [nhmmer score 12.5 E-value 1.3 Pos=-301] >RpoN alternative sigma factor [nhmmer score 14.0 E-value 0.33 Pos=-403] gltI GZ59_13410 glutamate/aspartate periplasmic binding protein (terminator conf=100, tail_score=-5.40474) >RpoN alternative sigma factor [nhmmer score 8.1 E-value 31.0 Pos=-64] nagB GZ59_13590 glucosamine-6-phosphate isomerase nagA GZ59_13580 N-acetylglucosamine-6-phosphate deacetylase nagC GZ59_13570 N-acetylglucosamine repressor nagC GZ59_13570 N-acetylglucosamine repressor nagA GZ59_13580 N-acetylglucosamine-6-phosphate deacetylase nagB GZ59_13590 glucosamine-6-phosphate isomerase >CRP [nhmmer score 11.5 E-value 2.3 Pos=-202] >NagC [nhmmer score 13.3 E-value 0.84 Pos=-171] >ArcA [nhmmer score 10.1 E-value 6.8 Pos=-39] nagE GZ59_13600 PTS system, N-acetylglucosamine-specific IIABC component (terminator conf=100, tail_score=-5.98781) glnS GZ59_13610 glutaminyl-tRNA synthetase (terminator conf=100, tail_score=-5.626) >ArcA [nhmmer score 11.3 E-value 2.9 Pos=-260] >OxyR [nhmmer score 9.0 E-value 20.0 Pos=-285] fur GZ59_13620 ferric uptake regulation protein (terminator conf=100, tail_score=-5.2015) (terminator conf=87, tail_score=-2.50816) fldA GZ59_13640 flavodoxin 1 >FNR [nhmmer score 8.5 E-value 27.0 Pos=-639] >KdgR [nhmmer score 11.2 E-value 3.9 Pos=-634] - GZ59_13650 methyl-accepting chemotaxis protein >FliA alternative sigma factor [nhmmer score 7.9 E-value 55.0 Pos=-170] - GZ59_13650 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.04356) - GZ59_13700 putative membrane protein kdpE GZ59_13710 two-component response regulator of kdp operon kdpD GZ59_13720 Osmosensitive K channel His kinase sensor kdpC GZ59_13730 potassium-transporting ATPase, C subunit kdpB GZ59_13740 potassium-transporting ATPase B chain kdpA GZ59_13750 potassium-transporting ATPase A chain >HexR [nhmmer score 8.5 E-value 39.0 Pos=-175] >CRP [nhmmer score 5.9 E-value 210.0 Pos=-84] ybfA GZ59_13760 putative DUF2517 family protein (terminator conf=100, tail_score=-5.26119) >RpoN alternative sigma factor [nhmmer score 9.0 E-value 16.0 Pos=-112] - GZ59_13830 putative allophanate hydrolase subunit 1 - GZ59_13840 putative allophanate hydrolase subunit 2 - GZ59_13850 putative lactam utilization protein pcp_1 GZ59_13860 pyrrolidone-carboxylate peptidase (terminator conf=78, tail_score=-4.08945) nei GZ59_13870 endonuclease VIII (terminator conf=91, tail_score=-4.88736) >RpoE alternative sigma factor [nhmmer score 6.4 E-value 160.0 Pos=-575] sdhC GZ59_13890 succinate dehydrogenase cytochrome b-556 subunit sdhD GZ59_13900 succinate dehydrogenase hydrophobic membrane anchor protein sdhA GZ59_13910 succinate dehydrogenase flavoprotein subunit sdhB GZ59_13920 succinate dehydrogenase iron-sulfur protein (terminator conf=90, tail_score=-3.33815) (terminator conf=100, tail_score=-5.27335) gltA GZ59_13880 citrate synthase >OxyR [nhmmer score 6.9 E-value 110.0 Pos=-449] >CRP [nhmmer score 9.2 E-value 15.0 Pos=-277] >FNR [nhmmer score 7.7 E-value 49.0 Pos=-276] sdhC GZ59_13890 succinate dehydrogenase cytochrome b-556 subunit sdhD GZ59_13900 succinate dehydrogenase hydrophobic membrane anchor protein sdhA GZ59_13910 succinate dehydrogenase flavoprotein subunit sdhB GZ59_13920 succinate dehydrogenase iron-sulfur protein (terminator conf=90, tail_score=-3.33815) >FNR [nhmmer score 12.7 E-value 0.94 Pos=-401] cydA1 GZ59_13970 cytochrome D ubiquinol oxidase subunit I cydB1 GZ59_13980 cytochrome D ubiquinol oxidase subunit II - GZ59_13990 putative membrane protein - GZ59_14000 putative membrane protein (terminator conf=93, tail_score=-4.54449) - GZ59_14010 putative thioesterase tolQ GZ59_14020 TolQ protein tolR GZ59_14030 tolR protein tolA GZ59_14040 TolA protein tolB GZ59_14050 TolB protein pal GZ59_14060 peptidoglycan-associated lipoprotein precursor - GZ59_14070 putative exported protein - GZ59_14080 - - GZ59_14090 - - GZ59_14100 - - GZ59_14110 - - GZ59_14130 hypothetical protein >NadR [nhmmer score 10.1 E-value 9.6 Pos=-20] nadA GZ59_14140 quinolinate synthetase A pnuC GZ59_14150 nicotinamide mononucleotide transport protein (terminator conf=100, tail_score=-5.55769) gpmA GZ59_14180 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase cusA GZ59_14190 cation efflux system protein cusB GZ59_14200 putative copper efflux system protein - GZ59_14210 putative exported protein - GZ59_14220 putative exported protein - GZ59_14230 putative membrane protein (terminator conf=88, tail_score=-3.54919) galM GZ59_14240 aldose 1-epimerase galE GZ59_14250 UDP-glucose 4-epimerase modF GZ59_14260 putative molybdenum transport ATP-binding protein modE GZ59_14270 putative molybdenum transport protein >ModE [nhmmer score 15.9 E-value 0.12 Pos=-43] modA GZ59_14290 molybdate-binding periplasmic protein modB GZ59_14300 molybdenum transport system permease protein modC GZ59_14310 molybdenum transport ATP-binding protein (terminator conf=79, tail_score=-5.46706) >CRP [nhmmer score 10.5 E-value 5.3 Pos=-174] >GalR [nhmmer score 12.4 E-value 1.0 Pos=-58] - GZ59_14320 sugar phosphate isomerase/epimerase (terminator conf=90, tail_score=-3.38329) - GZ59_14330 LacI-family transcriptional regulator - GZ59_14340 putative oxidoreductase - GZ59_14350 xylose isomerase-like TIM barrel domain protein - GZ59_14360 putative nucleoside H+ symporter >GalR [nhmmer score 12.6 E-value 0.9 Pos=-171], [nhmmer score 13.6 E-value 0.41 Pos=-141] glk GZ59_14370 glucokinase >NarP [nhmmer score 9.3 E-value 19.0 Pos=-124] fdnG GZ59_14450 formate dehydrogenase, nitrate-inducible, major subunit fdnH GZ59_14440 formate dehydrogenase, nitrate-inducible, iron-sulfur subunit fdnI GZ59_14430 formate dehydrogenase, nitrate-inducible, cytochrome b556 (terminator conf=100, tail_score=-5.30616) (terminator conf=100, tail_score=-3.93985) - GZ59_14530 Integral membrane TerC family protein >Fur [nhmmer score 10.5 E-value 9.0 Pos=-164] wecA2 GZ59_14550 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase wza GZ59_14560 putative polysaccharide export protein wzb GZ59_14570 putative protein-tyrosine-phosphatase wzc GZ59_14580 tyrosine-protein kinase >PmrA [nhmmer score 10.9 E-value 5.5 Pos=-33] rfbN GZ59_14760 O antigen biosynthesis rhamnosyltransferase rfbn rfbM GZ59_14770 mannose-1-phosphate guanylyltransferase rfbK GZ59_14780 phosphomannomutase (terminator conf=82, tail_score=-3.91084) >FliA alternative sigma factor [nhmmer score 8.2 E-value 42.0 Pos=-263] yjbE GZ59_14840 extracellular polysaccharide biosynthesis protein (terminator conf=93, tail_score=-4.96501) yjbF GZ59_14850 extracellular polysaccharide biosynthesis lipoprotein yjbG GZ59_14860 extracellular polysaccharide export OMA protein yjbH GZ59_14870 extracellular polysaccharide biosynthesis protein (terminator conf=100, tail_score=-5.25803) >CRP [nhmmer score 9.2 E-value 15.0 Pos=-237] bglY GZ59_14900 beta-glucosidase bglK GZ59_14910 putative beta-glucoside operon antiterminator - GZ59_14930 Antibiotic biosynthesis monooxygenase - GZ59_14940 putative transcriptional regulator >ArcA [nhmmer score 8.0 E-value 36.0 Pos=-99] iolA GZ59_14950 Methylmalonate semialdehyde dehydrogenase [acylating] (terminator conf=100, tail_score=-5.47159) fbpC GZ59_15060 Ferric iron ABC transporter, ATP-binding protein fbpB GZ59_15070 Ferric iron ABC transporter, permease protein (terminator conf=100, tail_score=-5.41746) fbpA GZ59_15080 Ferric iron ABC transporter, substrate binding protein >Rob [nhmmer score 12.0 E-value 2.0 Pos=-241] - GZ59_15090 diguanylate cyclase with GAF sensor >SlyA [nhmmer score 8.3 E-value 42.0 Pos=-94] >Fur [nhmmer score 10.4 E-value 9.7 Pos=-109] - GZ59_15240 non-ribosomal peptide synthetase - GZ59_15230 non-ribosomal peptide synthetase - GZ59_15220 ABC transporter ATP-binding protein (terminator conf=100, tail_score=-4.74103) >CRP [nhmmer score 5.9 E-value 210.0 Pos=-151] lacZ GZ59_15280 Beta-galactosidase lacY GZ59_15270 lactose permease - GZ59_15260 - (terminator conf=100, tail_score=-4.77757) - GZ59_15250 hypothetical protein >FNR [nhmmer score 7.7 E-value 50.0 Pos=-138] pnl GZ59_15370 pectin lyase (terminator conf=76, tail_score=-4.46514) (terminator conf=76, tail_score=-4.79174) >CpxR [nhmmer score 10.6 E-value 8.2 Pos=-163] >CRP [nhmmer score 6.3 E-value 150.0 Pos=-201] >RpoE alternative sigma factor [nhmmer score 7.0 E-value 95.0 Pos=-208] >FNR [nhmmer score 6.5 E-value 130.0 Pos=-383] >DcuR [nhmmer score 17.0 E-value 0.037 Pos=-486], [nhmmer score 14.1 E-value 0.36 Pos=-515] >KdgR [nhmmer score 13.1 E-value 0.95 Pos=-660] >NsrR [nhmmer score 9.2 E-value 14.0 Pos=-672] - GZ59_15410 sodium:dicarboxylate symporter (terminator conf=100, tail_score=-5.50499) >RpoN alternative sigma factor [nhmmer score 10.1 E-value 6.3 Pos=-243] >Fur [nhmmer score 9.2 E-value 24.0 Pos=-42], [nhmmer score 11.3 E-value 4.7 Pos=-36] fetM GZ59_15460 high affinity Fe2+ permease fetP GZ59_15470 Ferrous iron transport protein (terminator conf=100, tail_score=-4.57209) - GZ59_15610 putative glycerol dehydrogenase ssuC2 GZ59_15620 putative sulfonate ABC transporter, permease protein ssuB2 GZ59_15630 putative sulfonate ABC transporter, ATP-binding protein ssuA2 GZ59_15640 putative sulfonate ABC transporter, periplasmic binding protein >CpxR [nhmmer score 7.1 E-value 130.0 Pos=-297] >Rob [nhmmer score 10.7 E-value 5.4 Pos=-286] - GZ59_15650 putative malate/L-lactate dehydrogenase tauA GZ59_15660 putative taurine ABC transporter, periplasmic substrate binding protein tauC GZ59_15670 putative taurine ABC transporter, permease protein tauB GZ59_15680 putative taurine ABC transporter, ATP-binding protein - GZ59_15690 putative desulfhydrase - GZ59_15700 Asp/Glu/Hydantoin racemase family protein (terminator conf=79, tail_score=-4.59773) (terminator conf=100, tail_score=-4.18018) >FNR [nhmmer score 9.9 E-value 8.7 Pos=-248] >DcuR [nhmmer score 15.9 E-value 0.086 Pos=-356] >Rob [nhmmer score 10.5 E-value 6.0 Pos=-359] >GlpR [nhmmer score 9.1 E-value 19.0 Pos=-476] >NarP [nhmmer score 8.1 E-value 49.0 Pos=-526] dcuB GZ59_15710 anaerobic C4-dicarboxylate transporter (terminator conf=100, tail_score=-5.26316) (terminator conf=100, tail_score=-5.77988) >CpxR [nhmmer score 10.3 E-value 10.0 Pos=-73] >Fur [nhmmer score 13.9 E-value 0.65 Pos=-105] hasR GZ59_15760 TonB-dependent heme receptor hasA GZ59_15750 extracellular heme-binding protein (terminator conf=89, tail_score=-3.64703) - GZ59_15770 FecR-like transmembrane sensor - GZ59_15780 FecI-like sigma factor >Fur [nhmmer score 11.5 E-value 4.1 Pos=-128] - GZ59_15790 hypothetical protein prr GZ59_15800 Gamma-aminobutyraldehyde dehydrogenase >RpoN alternative sigma factor [nhmmer score 10.6 E-value 4.3 Pos=-68] patA GZ59_15810 putrescine aminotransferase (terminator conf=100, tail_score=-5.00616) >FliA alternative sigma factor [nhmmer score 11.3 E-value 4.2 Pos=-301] cheV GZ59_16050 chemotaxis protein CheV (terminator conf=100, tail_score=-5.60864) >Fur [nhmmer score 8.5 E-value 44.0 Pos=-153] - GZ59_16410 hypothetical protein (terminator conf=89, tail_score=-5.65927) - GZ59_16470 hypothetical protein - GZ59_16480 hypothetical protein >FNR [nhmmer score 6.9 E-value 96.0 Pos=-67] - GZ59_16490 hypothetical protein - GZ59_16500 hypothetical protein >Fur [nhmmer score 10.0 E-value 13.0 Pos=-142] - GZ59_16530 ankyrin repeat domain protein (terminator conf=100, tail_score=-4.41548) - GZ59_16570 putative lipoprotein (terminator conf=93, tail_score=-3.51948) - GZ59_16580 histone family protein nucleoid-structuring protein H-NS >Fur [nhmmer score 8.8 E-value 34.0 Pos=-153] - GZ59_16600 putative type IV pilin protein precursor (terminator conf=100, tail_score=-5.95286) - GZ59_16610 putative type IV prepilin >KdgR [nhmmer score 9.3 E-value 17.0 Pos=-500] >SlyA [nhmmer score 9.4 E-value 18.0 Pos=-169] - GZ59_16630 bacteriocin killing protein - GZ59_16640 bacteriocin immunity protein >FNR [nhmmer score 6.9 E-value 94.0 Pos=-424], [nhmmer score 8.3 E-value 31.0 Pos=-152] >Fur [nhmmer score 14.6 E-value 0.35 Pos=-342] >NarP [nhmmer score 8.4 E-value 39.0 Pos=-278] - GZ59_16680 hypothetical protein - GZ59_16690 hypothetical protein intB GZ59_16700 integrase >FNR [nhmmer score 8.7 E-value 22.0 Pos=-508] nac_1 GZ59_16720 - >RpoN alternative sigma factor [nhmmer score 15.1 E-value 0.14 Pos=-54] nac_1 GZ59_16720 - - GZ59_16690 hypothetical protein intB GZ59_16700 integrase (terminator conf=100, tail_score=-5.56112) - GZ59_16710 - >NarP [nhmmer score 7.3 E-value 92.0 Pos=-33] nac_1 GZ59_16720 - >CRP [nhmmer score 6.6 E-value 120.0 Pos=-295] >KdgR [nhmmer score 9.8 E-value 11.0 Pos=-229] iraP GZ59_16730 sigma S stabilising anti-RssB factor (terminator conf=100, tail_score=-4.30933) - GZ59_16770 hypothetical protein >NtrC [nhmmer score 7.6 E-value 59.0 Pos=-515] >ArcA [nhmmer score 8.6 E-value 22.0 Pos=-272] expA GZ59_16780 two-component response regulator uvrC GZ59_16790 excinuclease ABC subunit C pgsA GZ59_16800 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase - GZ59_16810 - - GZ59_16820 - - GZ59_16830 - (terminator conf=100, tail_score=-5.47218) >RcsB [nhmmer score 7.6 E-value 62.0 Pos=-91] yqaE GZ59_17150 membrane protein YqaE (terminator conf=100, tail_score=-5.0133) (terminator conf=100, tail_score=-4.89521) - GZ59_17210 hypothetical protein moeB GZ59_17220 molybdopterin biosynthesis protein moeA GZ59_17230 molybdopterin biosynthesis protein >ArcA [nhmmer score 12.1 E-value 1.5 Pos=-158] - GZ59_17240 putative ABC transporter ATP-binding protein - GZ59_17250 putative ABC transporter periplasmic binding protein - GZ59_17260 putative ABC transporter permease protein - GZ59_17270 putative ABC transporter permease protein >CRP [nhmmer score 7.5 E-value 57.0 Pos=-81] cdd GZ59_17290 cytidine deaminase bioA GZ59_17330 adenosylmethionine-8-amino-7-oxononanoate aminotransferase >BirA [nhmmer score 8.4 E-value 10.0 Pos=-85] bioB GZ59_17340 biotin synthase bioF GZ59_17350 8-amino-7-oxononanoate synthase bioC GZ59_17360 biotin synthesis protein bioD GZ59_17370 dethiobiotin synthetase (terminator conf=77, tail_score=-5.01732) >LexA [nhmmer score 12.6 E-value 1.4 Pos=-232] uvrB GZ59_17380 excision nuclease ABC subunit B - GZ59_17390 putative glyoxalase/bleomycin resistance protein/dioxygenase - GZ59_17400 hypothetical protein >ModE [nhmmer score 17.3 E-value 0.04 Pos=-222] moaA GZ59_17420 molybdenum cofactor biosynthesis protein A moaB GZ59_17430 molybdenum cofactor biosynthesis protein B moaC GZ59_17440 molybdenum cofactor biosynthesis protein C moaD GZ59_17450 molybdopterin converting factor subunit 1 moaE GZ59_17460 molybdopterin converting factor subunit 2 - GZ59_17470 putative membrane protein (terminator conf=100, tail_score=-5.76633) >CpxR [nhmmer score 8.7 E-value 35.0 Pos=-371] >Rob [nhmmer score 13.6 E-value 0.57 Pos=-259] >Fur [nhmmer score 10.2 E-value 12.0 Pos=-249] acr GZ59_17480 TonB-dependent ferric achromobactin receptor cbrA GZ59_17490 achromobactin-binding periplasmic protein cbrB GZ59_17500 achromobactin transport system permease protein CbrB cbrC GZ59_17510 achromobactin transport system permease protein CbrC cbrD GZ59_17520 achromobactin transport ATP-binding protein >MetJ [nhmmer score 15.6 E-value 0.096 Pos=-90] mmuP GZ59_17600 putative S-methylmethionine permease mmuM GZ59_17610 homocysteine S-methyltransferase - GZ59_17620 hypothetical protein (terminator conf=100, tail_score=-5.55664) >Rob [nhmmer score 13.7 E-value 0.53 Pos=-353] >Fur [nhmmer score 9.3 E-value 23.0 Pos=-297] prtW GZ59_17740 metalloprotease (terminator conf=100, tail_score=-4.74285) inh GZ59_17750 protease inhibitor prtD GZ59_17760 protease secretion ATP-binding protein prtE GZ59_17770 protease secretion protein prtF GZ59_17780 protease secretion protein - GZ59_17790 putative membrane protein - GZ59_17800 Lytic transglycosylase catalytic - GZ59_17810 putative exported protein - GZ59_17820 putative exported protein - GZ59_17830 hypothetical protein (terminator conf=100, tail_score=-5.61596) (terminator conf=91, tail_score=-4.81685) dps GZ59_17910 DNA protection during starvation protein >Rob [nhmmer score 12.4 E-value 1.5 Pos=-100] >FNR [nhmmer score 8.8 E-value 20.0 Pos=-94] >Fur [nhmmer score 8.9 E-value 31.0 Pos=-93], [nhmmer score 8.9 E-value 32.0 Pos=-66] - GZ59_17920 hypothetical protein rhtA GZ59_17930 Threonine/homoserine exporter >RcsB [nhmmer score 8.1 E-value 44.0 Pos=-219] >PhoB [nhmmer score 12.7 E-value 1.0 Pos=-177] ompX GZ59_17940 outer membrane protein (terminator conf=100, tail_score=-5.65177) >RpoE alternative sigma factor [nhmmer score 10.2 E-value 8.2 Pos=-187] ompX GZ59_17940 outer membrane protein (terminator conf=100, tail_score=-5.65177) - GZ59_17960 MATE efflux family protein >KdgR [nhmmer score 12.3 E-value 1.8 Pos=-245] - GZ59_17970 Rhodanese domain protein - GZ59_17980 hypothetical protein >LexA [nhmmer score 16.4 E-value 0.075 Pos=-147] - GZ59_18080 putative phage-related protein - GZ59_18070 phage-related protein sotA GZ59_18300 sugar efflux transporter >FruR [nhmmer score 11.0 E-value 2.6 Pos=-104], [nhmmer score 14.3 E-value 0.19 Pos=-37] fruB GZ59_18310 PTS system, fructose-specific IIa/Fpr component fruK GZ59_18320 1-phosphofructokinase fruA GZ59_18330 pts system, fructose-specific IIbc component (terminator conf=100, tail_score=-5.77988) - GZ59_18350 putative membrane protein >PhoP [nhmmer score 9.5 E-value 18.0 Pos=-47] rscR GZ59_18360 LysR-family transciptional regulator lysP GZ59_18370 lysine-specific permease (terminator conf=100, tail_score=-5.61689) >CRP [nhmmer score 6.5 E-value 130.0 Pos=-239] >FNR [nhmmer score 13.6 E-value 0.48 Pos=-238] >Fur [nhmmer score 12.5 E-value 1.9 Pos=-101] - GZ59_18380 exogenous ferric siderophore TonB-dependent receptor (terminator conf=100, tail_score=-2.87963) >Fur [nhmmer score 9.4 E-value 22.0 Pos=-222] hprA GZ59_18390 glycerate dehydrogenase >RpoE alternative sigma factor [nhmmer score 7.1 E-value 88.0 Pos=-142] - GZ59_18410 Putative ABC sugar transporter, ATP-binding protein - GZ59_18400 Putative ABC sugar transporter, permease protein >FliA alternative sigma factor [nhmmer score 11.8 E-value 2.7 Pos=-226] - GZ59_18480 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.72622) - GZ59_18530 hypothetical protein >CRP [nhmmer score 8.6 E-value 24.0 Pos=-537] >ArcA [nhmmer score 8.2 E-value 30.0 Pos=-404] >NsrR [nhmmer score 9.1 E-value 15.0 Pos=-43] ehpR GZ59_18550 putative phenazine antibiotic biosynthesis protein EhpR - GZ59_18560 putative phenazine antibiotic biosynthesis protein ehpA GZ59_18570 putative phenazine antibiotic biosynthesis protein EhpA ehpB GZ59_18580 putative phenazine antibiotic biosynthesis protein EhpB ehpC GZ59_18590 putative phenazine antibiotic biosynthesis protein EhpC - GZ59_18600 hypothetical protein ehpD GZ59_18610 putative phenazine antibiotic biosynthesis protein EhpD ehpE GZ59_18620 putative phenazine antibiotic biosynthesis protein EhpE ehpF GZ59_18630 putative phenazine antibiotic biosynthesis protein EhpF ehpG GZ59_18640 putative phenazine antibiotic biosynthesis protein EhpG - GZ59_18650 putative malonyl CoA-acyl carrier protein transacylase - GZ59_18660 putative polyketide synthetase - GZ59_18670 hypothetical protein - GZ59_18680 putative flavin-containing amine oxidase - GZ59_18690 putative exported protein (terminator conf=93, tail_score=-3.14878) >DeoR [nhmmer score 7.1 E-value 110.0 Pos=-80], [nhmmer score 10.7 E-value 6.5 Pos=-110] >CRP [nhmmer score 7.5 E-value 56.0 Pos=-114] deoC2 GZ59_18760 putative deoxyribose-phosphate aldolase deoR GZ59_18750 deoxyribose operon repressor >RpoE alternative sigma factor [nhmmer score 12.9 E-value 0.98 Pos=-37] >CpxR [nhmmer score 9.2 E-value 24.0 Pos=-70] rybB GZ59_18770 - >ArgR [nhmmer score 15.6 E-value 0.13 Pos=-101] artJ GZ59_18900 arginine-binding periplasmic protein 2 (terminator conf=76, tail_score=-5.31275) >NsrR [nhmmer score 15.1 E-value 0.15 Pos=-39] >FNR [nhmmer score 7.6 E-value 53.0 Pos=-119] hcp GZ59_18990 hybrid-cluster protein - GZ59_18980 ferredoxin >LexA [nhmmer score 9.4 E-value 17.0 Pos=-77] ftsK GZ59_19140 cell division protein (terminator conf=90, tail_score=-3.28712) >CpxR [nhmmer score 8.5 E-value 40.0 Pos=-157] lolA GZ59_19150 outer-membrane lipoproteins carrier protein rarA GZ59_19160 Replication-associated recombination protein A serS GZ59_19170 seryl-tRNA synthetase (terminator conf=100, tail_score=-5.50499) >Mlc [nhmmer score 10.9 E-value 6.3 Pos=-256] >FNR [nhmmer score 7.2 E-value 76.0 Pos=-237] - GZ59_19180 putative transport protein - GZ59_19190 LysR-family transcriptional regulator >NifA [nhmmer score 10.4 E-value 6.2 Pos=-104] - GZ59_19200 permease (terminator conf=100, tail_score=-3.35197) - GZ59_19210 hypothetical protein - GZ59_19220 putative hydantoinase (terminator conf=100, tail_score=-5.00616) >CpxR [nhmmer score 7.7 E-value 80.0 Pos=-454] - GZ59_19620 hypothetical protein >CRP [nhmmer score 6.1 E-value 180.0 Pos=-81] >FNR [nhmmer score 7.0 E-value 85.0 Pos=-80] focA GZ59_19640 putative formate transporter pflB GZ59_19630 formate acetyltransferase (terminator conf=100, tail_score=-4.84359) (terminator conf=87, tail_score=-5.13343) >NarP [nhmmer score 6.2 E-value 220.0 Pos=-93] >CRP [nhmmer score 7.1 E-value 83.0 Pos=-163] - GZ59_19830 putative methyl-accepting chemotaxis protein >DcuR [nhmmer score 11.5 E-value 2.5 Pos=-240] tcp GZ59_19840 putative methyl-accepting chemotaxis citrate transducer (terminator conf=100, tail_score=-3.82665) citB GZ59_19850 two-component response regulator citA GZ59_19860 signal transduction histidine kinase regulating citrate/malate metabolism >NadR [nhmmer score 12.4 E-value 1.7 Pos=-259] >CRP [nhmmer score 8.5 E-value 27.0 Pos=-76] citW GZ59_19870 citrate/acetate antiporter - GZ59_19880 putative fumarylacetoacetate hydrolase citC GZ59_19890 [citrate [pro-3s]-lyase] ligase citD GZ59_19900 citrate lyase acyl carrier protein citE_2 GZ59_19910 citrate lyase, citryl-ACP lyase subunit beta citF GZ59_19920 citrate lyase alpha chain citX GZ59_19930 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase citG GZ59_19940 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase (terminator conf=100, tail_score=-4.2828) sbcB GZ59_20000 exodeoxyribonuclease I >FNR [nhmmer score 7.0 E-value 87.0 Pos=-184] >Fur [nhmmer score 9.3 E-value 24.0 Pos=-81] - GZ59_20010 putative iron ABC transporter, priplasmic binding protein - GZ59_20020 putative iron ABC transporter, permease component - GZ59_20030 putative iron ABC transporter permease component - GZ59_20040 putative iron ABC transporter, ATP-binding protein >PurR [nhmmer score 8.5 E-value 18.0 Pos=-125] pyrD GZ59_20270 dihydroorotate dehydrogenase >GlpR [nhmmer score 7.1 E-value 95.0 Pos=-74] - GZ59_20350 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.23292) >Rob [nhmmer score 12.0 E-value 2.1 Pos=-193] cutC GZ59_20490 copper homeostasis protein (terminator conf=100, tail_score=-5.40474) (terminator conf=100, tail_score=-3.95036) (terminator conf=76, tail_score=-5.06451) - GZ59_20510 hypothetical protein - GZ59_20520 hypothetical protein >LexA [nhmmer score 16.6 E-value 0.063 Pos=-331] >Fur [nhmmer score 11.9 E-value 3.1 Pos=-277] - GZ59_20540 SnoaL-like domain protein (terminator conf=87, tail_score=-4.57837) - GZ59_20570 putative membrane protein - GZ59_20580 hypothetical protein - GZ59_20590 Diguanylate phosphodiesterase >ArcA [nhmmer score 8.1 E-value 33.0 Pos=-245] aspS GZ59_20600 aspartyl-tRNA synthetase nudB GZ59_20610 DATP pyrophosphohydrolase (terminator conf=80, tail_score=-5.03747) - GZ59_20620 hypothetical protein ruvC GZ59_20630 crossover junction endodeoxyribonuclease RuvC (terminator conf=100, tail_score=-5.53436) >LexA [nhmmer score 11.0 E-value 4.6 Pos=-83] ruvA GZ59_20640 holliday junction DNA helicase ruvB GZ59_20650 Holliday junction DNA helicase RuvB (terminator conf=100, tail_score=-3.68351) - GZ59_20680 PTS system, lactose/cellobiose family IIC subunit >AscG [nhmmer score 12.6 E-value 0.67 Pos=-112] - GZ59_20690 LacI-family transcriptional regulator (terminator conf=100, tail_score=-5.67529) (terminator conf=100, tail_score=-5.61881) znuB GZ59_20700 high-affinity zinc uptake system membrane protein znuC GZ59_20710 high-affinity zinc uptake system ATP-binding protein >Zur [nhmmer score 21.5 E-value 0.0011 Pos=-52] znuA GZ59_20720 high-affinity zinc uptake system periplasmic substrate-binding protein - GZ59_20730 Peptidase M23 (terminator conf=91, tail_score=-4.61873) msbB GZ59_20740 lipid A biosynthesis (KDO)2-(lauroyl)-lipid iva acyltransferase (terminator conf=100, tail_score=-4.82667) hexR GZ59_20760 transcriptional regulator, RpiR family >PhoB [nhmmer score 13.2 E-value 0.66 Pos=-103] >HexR [nhmmer score 13.8 E-value 0.69 Pos=-39] zwf GZ59_20770 glucose-6-phosphate 1-dehydrogenase eda GZ59_20780 Khg/KdpG aldolase (terminator conf=100, tail_score=-5.60993) (terminator conf=95, tail_score=-3.2827) purT GZ59_20790 phosphoribosylglycinamide formyltransferase 2 >PurR [nhmmer score 12.1 E-value 1.1 Pos=-156] ptrB GZ59_20800 protease II - GZ59_20810 hypothetical protein holE GZ59_20820 DNA polymerase III, theta subunit >Fur [nhmmer score 11.0 E-value 6.1 Pos=-153] >OxyR [nhmmer score 8.2 E-value 39.0 Pos=-95] >ArcA [nhmmer score 9.8 E-value 9.0 Pos=-83] ftnA GZ59_20830 ferritin (terminator conf=95, tail_score=-4.22377) (terminator conf=77, tail_score=-2.50994) - GZ59_21010 putative AraC-family transcriptional regulator - GZ59_21020 hypothetical protein >ArcA [nhmmer score 8.6 E-value 23.0 Pos=-329] fsr GZ59_21030 putative fosmidomycin exporter ogt_1 GZ59_21040 putative methylated DNA--protein-cysteine methyltransferase >Fur [nhmmer score 8.8 E-value 33.0 Pos=-45] purB GZ59_21130 adenylosuccinate lyase (terminator conf=100, tail_score=-4.431) >NsrR [nhmmer score 12.2 E-value 1.3 Pos=-122] yccM GZ59_21190 electron transport protein (terminator conf=100, tail_score=-5.69379) rdgA GZ59_21210 regulator of pectin lyase production >CRP [nhmmer score 8.7 E-value 23.0 Pos=-124] >FNR [nhmmer score 10.7 E-value 4.5 Pos=-123] - GZ59_21220 hypothetical protein (terminator conf=100, tail_score=-5.69379) rdgA GZ59_21210 regulator of pectin lyase production >PhoP [nhmmer score 8.7 E-value 35.0 Pos=-377] - GZ59_21230 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor (terminator conf=91, tail_score=-4.61566) (terminator conf=76, tail_score=-4.82667) - GZ59_21240 signal transduction histidine kinase, LytS - GZ59_21250 two-component response regulator - GZ59_21260 putative membrane protein (terminator conf=100, tail_score=-5.82388) >PhoB [nhmmer score 9.9 E-value 8.3 Pos=-116] ugpB2 GZ59_21270 glycerol-3-phosphate-binding periplasmic protein precursor - GZ59_21280 putative glycerophosphoryl diester phosphodiesterase htpX GZ59_21290 heat shock protein (terminator conf=100, tail_score=-3.95071) >KdgR [nhmmer score 18.5 E-value 0.015 Pos=-181] >FliA alternative sigma factor [nhmmer score 11.1 E-value 4.9 Pos=-175] ogl GZ59_21300 oligogalacturonate lyase (terminator conf=95, tail_score=-4.2142) >FNR [nhmmer score 7.3 E-value 71.0 Pos=-44] kdgR GZ59_21310 pectin degradation repressor (terminator conf=100, tail_score=-5.26316) >NsrR [nhmmer score 17.0 E-value 0.035 Pos=-49] - GZ59_21420 hypothetical protein (terminator conf=100, tail_score=-4.66163) >LexA [nhmmer score 9.8 E-value 12.0 Pos=-37] - GZ59_21480 putative inner membrane protein - GZ59_21470 putative sodium:dicarboxylate symporter (terminator conf=100, tail_score=-6.02919) >CRP [nhmmer score 6.3 E-value 150.0 Pos=-125] >KdgR [nhmmer score 9.4 E-value 16.0 Pos=-156] >FNR [nhmmer score 6.9 E-value 94.0 Pos=-206] kdgM GZ59_21500 oligogalacturonate-specific porin >KdgR [nhmmer score 12.4 E-value 1.6 Pos=-64] pelW GZ59_21550 pectate disaccharide-lyase togM GZ59_21540 binding-protein-dependent oligogalacturonate transport system, inner membrane component TogM togN GZ59_21530 binding-protein-dependent oligogalacturonate transport system, inner membrane component TogN togA GZ59_21520 oligogalacturonate ABC transporter, ATP-binding component togB GZ59_21510 periplasmic pectic oligomers binding protein (terminator conf=100, tail_score=-5.01042) (terminator conf=100, tail_score=-5.63012) kduD GZ59_21560 2-keto-3-deoxygluconate oxidoreductase kduI1 GZ59_21570 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase >KdgR [nhmmer score 20.0 E-value 0.0046 Pos=-178] kdgF GZ59_21580 pectin degradation protein (terminator conf=100, tail_score=-3.82665) >Fur [nhmmer score 11.6 E-value 3.9 Pos=-56], [nhmmer score 9.1 E-value 26.0 Pos=-553], [nhmmer score 10.3 E-value 11.0 Pos=-604] yfeA GZ59_21650 periplasmic chelated iron-binding protein yfeB GZ59_21640 chelated iron transport system membrane protein YfeB yfeC GZ59_21630 chelated iron transport system membrane protein YfeC yfeD GZ59_21620 chelated iron transport system membrane protein YfeD >Fur [nhmmer score 9.1 E-value 26.0 Pos=-576], [nhmmer score 10.3 E-value 11.0 Pos=-525] >RpoN alternative sigma factor [nhmmer score 10.1 E-value 6.7 Pos=-483] >RpoE alternative sigma factor [nhmmer score 6.4 E-value 150.0 Pos=-370] cspC GZ59_21660 cold shock protein cspC (terminator conf=100, tail_score=-5.60689) rrmA GZ59_21680 ribosomal RNA large subunit methyltransferase A >Fur [nhmmer score 12.2 E-value 2.4 Pos=-310] mntP GZ59_21690 putative manganese efflux pump MntP (terminator conf=91, tail_score=-5.29445) - GZ59_21700 putative membrane protein (terminator conf=100, tail_score=-5.7946) manZ GZ59_21710 PTS system, mannose-specific iid component manY GZ59_21720 PTS system, mannose-specific IIc component manX GZ59_21730 PTS system, mannose-specific IIab component >Mlc [nhmmer score 14.4 E-value 0.43 Pos=-386] >NagC [nhmmer score 12.3 E-value 1.8 Pos=-385] - GZ59_21740 putative membrane protein (terminator conf=100, tail_score=-4.17274) - GZ59_21940 putative lipoprotein >CRP [nhmmer score 6.3 E-value 150.0 Pos=-151] >ArcA [nhmmer score 12.9 E-value 0.8 Pos=-118] - GZ59_21950 Uncharacterized protein (terminator conf=100, tail_score=-4.28977) (terminator conf=81, tail_score=-2.65884) - GZ59_22000 DeoC/LacD family aldolase - GZ59_22010 AAA family ATPase - GZ59_22020 sugar phosphotransferase system permease subunit IIA - GZ59_22030 sugar phosphotransferase system permease subunit IIB - GZ59_22040 sugar phosphotransferase system permease subunit IIC - GZ59_22050 sugar phosphotransferase system permease subunit IIB - GZ59_22060 putative 6-phosphofructokinase isozyme II >CRP [nhmmer score 6.8 E-value 98.0 Pos=-419], [nhmmer score 12.0 E-value 1.6 Pos=-345], [nhmmer score 9.3 E-value 14.0 Pos=-223] dadA GZ59_22070 D-amino acid dehydrogenase small subunit (terminator conf=95, tail_score=-3.22653) - GZ59_22130 putative aldose 1-epimerase (terminator conf=100, tail_score=-5.66229) gapA GZ59_22140 glyceraldehyde 3-phosphate dehydrogenase a >CRP [nhmmer score 12.5 E-value 1.1 Pos=-135] >ArcA [nhmmer score 11.0 E-value 3.6 Pos=-61] msrB GZ59_22150 peptide methionine sulfoxide reductase - GZ59_22160 hypothetical protein >FruR [nhmmer score 10.2 E-value 4.9 Pos=-87] - GZ59_22160 hypothetical protein >KdgR [nhmmer score 10.0 E-value 9.7 Pos=-225] >NarP [nhmmer score 8.5 E-value 35.0 Pos=-291] >CRP [nhmmer score 8.0 E-value 40.0 Pos=-317] >FruR [nhmmer score 9.7 E-value 7.2 Pos=-340] >Fur [nhmmer score 11.2 E-value 5.3 Pos=-371] adhE GZ59_22360 bifunctional acetaldehyde-CoA dehydrogenase and iron-dependent alcohol dehydrogenase and pyruvate-formate lyase deactivase (terminator conf=100, tail_score=-5.06414) >DcuR [nhmmer score 15.2 E-value 0.16 Pos=-349] oppA2 GZ59_22370 extracellular solute-binding protein family 5 oppA1 GZ59_22380 periplasmic oligopeptide-binding protein (terminator conf=100, tail_score=-4.42386) oppB GZ59_22390 oligopeptide transport system permease protein OppB oppC GZ59_22400 oligopeptide transport system permease protein OppC oppD GZ59_22410 oligopeptide transport ATP-binding protein OppD oppF GZ59_22420 oligopeptide transport ATP-binding protein OppF (terminator conf=100, tail_score=-3.27525) >TrpR [nhmmer score 15.2 E-value 0.22 Pos=-528] ispZ GZ59_22490 intracellular septation protein - GZ59_22480 putative acyl-CoA thioester hydrolase (terminator conf=100, tail_score=-5.38951) >Fur [nhmmer score 8.4 E-value 47.0 Pos=-373] >FNR [nhmmer score 7.7 E-value 50.0 Pos=-374] - GZ59_22530 putative phage-related protein - GZ59_22520 hypothetical protein - GZ59_22510 hypothetical protein - GZ59_22500 hypothetical protein (terminator conf=79, tail_score=-3.82083) (terminator conf=76, tail_score=-4.75309) - GZ59_22570 putative membrane protein >CRP [nhmmer score 6.5 E-value 130.0 Pos=-164] >FNR [nhmmer score 10.0 E-value 7.9 Pos=-163] >NarP [nhmmer score 11.4 E-value 3.6 Pos=-56] ompW GZ59_22580 outer membrane protein W (terminator conf=100, tail_score=-4.82901) >PhoP [nhmmer score 9.6 E-value 17.0 Pos=-323] - GZ59_22590 putative oligogalacturonate-specific porin (terminator conf=100, tail_score=-5.626) >TrpR [nhmmer score 16.1 E-value 0.1 Pos=-232] trpE GZ59_22650 anthranilate synthase component I trpG GZ59_22640 anthranilate synthase component II trpD GZ59_22630 anthranilate phosphoribosyltransferase trpC GZ59_22620 tryptophan biosynthesis protein trpB GZ59_22610 tryptophan synthase beta chain trpA GZ59_22600 tryptophan synthase alpha chain (terminator conf=100, tail_score=-3.58522) - GZ59_22750 hypothetical protein >SlyA [nhmmer score 8.1 E-value 50.0 Pos=-135] topA GZ59_22760 DNA topoisomerase I (terminator conf=100, tail_score=-5.67063) (terminator conf=80, tail_score=-3.73775) >Fur [nhmmer score 9.8 E-value 16.0 Pos=-488] cysB GZ59_22770 cys regulon transcriptional activator (terminator conf=100, tail_score=-4.96762) >NifA [nhmmer score 7.8 E-value 47.0 Pos=-58] rnfA GZ59_22860 electron transport complex protein RnfA rnfB GZ59_22850 electron transport complex protein RnfB - GZ59_22830 - rnfD GZ59_22820 electron transport complex protein RnfD rnfG GZ59_22810 electron transport complex protein RnfG rnfE GZ59_22800 electron transport complex protein RnfE nth GZ59_22790 endonuclease III (terminator conf=100, tail_score=-3.16921) araA GZ59_22870 L-arabinose isomerase araB GZ59_22880 L-ribulokinase >AraC [nhmmer score 12.9 E-value 0.72 Pos=-237], [nhmmer score 10.9 E-value 3.6 Pos=-162] >CRP [nhmmer score 6.4 E-value 140.0 Pos=-190] araF GZ59_22890 L-arabinose-binding periplasmic protein araG GZ59_22900 L-arabinose transport ATP-binding protein araH GZ59_22910 L-arabinose transport system permease protein araC GZ59_22920 arabinose operon regulatory protein - GZ59_22930 putative oxidoreductase (terminator conf=77, tail_score=-2.64313) - GZ59_22940 putative sodium bile acid symporter (terminator conf=100, tail_score=-3.49777) >Mlc [nhmmer score 10.1 E-value 11.0 Pos=-152] mlc GZ59_23040 Rok-family transcriptional regulator - GZ59_23050 dethiobiotin synthetase (terminator conf=91, tail_score=-3.76224) - GZ59_23060 drug resistance transporter, EmrB/QacA subfamily (terminator conf=81, tail_score=-4.13014) >RpoN alternative sigma factor [nhmmer score 14.3 E-value 0.25 Pos=-64] >KdgR [nhmmer score 10.3 E-value 8.0 Pos=-118] - GZ59_23110 putative aminotransferase >CRP [nhmmer score 12.8 E-value 0.82 Pos=-132] gpgP GZ59_23130 Glucosyl-3-phosphoglycerate/mannosyl-3- phosphogly cerate phosphatase gpgS GZ59_23120 glucosyl-3-phosphoglycerate synthase (terminator conf=100, tail_score=-5.89947) >FliA alternative sigma factor [nhmmer score 9.9 E-value 12.0 Pos=-96] - GZ59_23400 methyl-accepting chemotaxis protein with Cache sensor domain (terminator conf=100, tail_score=-3.37493) - GZ59_23390 LysR-family transcriptional regulator >ArcA [nhmmer score 8.6 E-value 23.0 Pos=-175] - GZ59_23440 cytochrome b562 (terminator conf=100, tail_score=-5.88565) - GZ59_23430 TetR-family transcriptional regulator - GZ59_23420 major facilitator superfamily MFS_1 (terminator conf=83, tail_score=-3.64318) - GZ59_23410 putative acetyltransferase - GZ59_23400 methyl-accepting chemotaxis protein with Cache sensor domain (terminator conf=100, tail_score=-3.37493) - GZ59_23390 LysR-family transcriptional regulator (terminator conf=100, tail_score=-5.56673) - GZ59_23560 extracellular solute-binding protein family 1 - GZ59_23570 putative oxidoreductase >RhaS [nhmmer score 29.4 E-value 3.2e-06 Pos=-343] ogt_2 GZ59_23580 methylated-DNA--protein-cysteine methyltransferase >FNR [nhmmer score 9.9 E-value 8.8 Pos=-37] fnr GZ59_23590 DNA-binding transcriptional dual regulator (terminator conf=100, tail_score=-3.55447) uspE GZ59_23600 stress-induced protein (terminator conf=100, tail_score=-4.62302) (terminator conf=100, tail_score=-4.00868) (terminator conf=78, tail_score=-3.6279) (terminator conf=83, tail_score=-5.32944) kdsA GZ59_23690 2-dehydro-3-deoxyphosphooctonate aldolase sirB1 GZ59_23700 putative regulator sirB2 GZ59_23710 putative membrane protein hemK GZ59_23720 protein methyltransferase prfA GZ59_23730 peptide chain release factor RF-1 hemA GZ59_23740 glutamyl-tRNA reductase >FNR [nhmmer score 10.3 E-value 6.6 Pos=-113] lolB GZ59_23750 outer-membrane lipoprotein ispE GZ59_23760 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (terminator conf=100, tail_score=-3.39895) prs GZ59_23770 ribose-phosphate pyrophosphokinase (terminator conf=90, tail_score=-4.63048) (terminator conf=76, tail_score=-3.36452) (terminator conf=100, tail_score=-5.8096) - GZ59_23780 putative membrane protein >ArcA [nhmmer score 8.8 E-value 19.0 Pos=-118] pth GZ59_23790 peptidyl-tRNA hydrolase - GZ59_23800 hypothetical protein (terminator conf=100, tail_score=-4.70319) - GZ59_23810 prophage integrase - GZ59_23820 Bacteriophage polarity suppression protein (terminator conf=80, tail_score=-4.2349) (terminator conf=100, tail_score=-5.64274) ascB GZ59_23980 6-phospho-beta-glucosidase ascF GZ59_23990 PTS system, arbutin-, cellobiose-, and salicin-specific IIabc component >AscG [nhmmer score 11.5 E-value 1.5 Pos=-202] >CRP [nhmmer score 6.3 E-value 150.0 Pos=-130] ascG GZ59_24000 asc operon repressor (terminator conf=86, tail_score=-4.12198) (terminator conf=95, tail_score=-4.8083) - GZ59_24020 hypothetical protein - GZ59_24030 hypothetical protein - GZ59_24040 putative luciferase-like monooxygenase >Fur [nhmmer score 10.0 E-value 13.0 Pos=-168] - GZ59_24050 putative metal-dependent peptidase >CRP [nhmmer score 7.1 E-value 79.0 Pos=-318] - GZ59_24140 TM2 domain protein >RpoN alternative sigma factor [nhmmer score 12.2 E-value 1.3 Pos=-64] ucaB GZ59_24230 allophanate hydrolase ucaA GZ59_24220 urea carboxylase - GZ59_24210 transcriptional regulator for urea utilization, GntR-family urtA GZ59_24200 urea ABC transporter, periplasmic urea binding protein (terminator conf=81, tail_score=-3.15985) urtB GZ59_24190 urea ABC transporter, permease protein UrtB urtC GZ59_24180 urea ABC transporter, permease protein UrtC urtD GZ59_24170 Urea ABC transporter, ATPase protein UrtD urtE GZ59_24160 Urea ABC transporter, ATPase protein UrtE - GZ59_24150 putative exported protein - GZ59_24150 putative exported protein urtE GZ59_24160 Urea ABC transporter, ATPase protein UrtE urtD GZ59_24170 Urea ABC transporter, ATPase protein UrtD urtC GZ59_24180 urea ABC transporter, permease protein UrtC urtB GZ59_24190 urea ABC transporter, permease protein UrtB (terminator conf=81, tail_score=-3.15985) urtA GZ59_24200 urea ABC transporter, periplasmic urea binding protein - GZ59_24210 transcriptional regulator for urea utilization, GntR-family ucaA GZ59_24220 urea carboxylase ucaB GZ59_24230 allophanate hydrolase (terminator conf=100, tail_score=-3.79162) - GZ59_24240 putative oxidoreductase >KdgR [nhmmer score 11.5 E-value 3.0 Pos=-349] - GZ59_24260 KdgM-like oligalacturonate-specific porin - GZ59_24270 KdgM-like porin (terminator conf=80, tail_score=-3.37612) - GZ59_24280 periplasmic pectate lyase >HrpL alternative sigma factor [nhmmer score 13.3 E-value 0.83 Pos=-66] dspE GZ59_24870 type III secretion system effector protein dspF GZ59_24860 DspE-specific secretory chaperone >HrpL alternative sigma factor [nhmmer score 15.6 E-value 0.15 Pos=-87] hrpW GZ59_24880 HrpW harpin shcW GZ59_24890 putative HrpW-specific chaperone (terminator conf=76, tail_score=-4.23104) >FNR [nhmmer score 7.2 E-value 71.0 Pos=-99] >MetR [nhmmer score 10.8 E-value 5.8 Pos=-414] - GZ59_24960 VgrG protein - GZ59_24950 uncharacterized protein - GZ59_24940 hypothetical protein - GZ59_24930 putative lipoprotein - GZ59_24920 putative lipoprotein - GZ59_24910 putative lipoprotein - GZ59_24900 hypothetical protein (terminator conf=89, tail_score=-4.72846) >HrpL alternative sigma factor [nhmmer score 13.2 E-value 0.92 Pos=-111] hrpN GZ59_24970 harpin (terminator conf=88, tail_score=-4.58786) (terminator conf=89, tail_score=-4.44797) >HrpL alternative sigma factor [nhmmer score 17.3 E-value 0.041 Pos=-91] hrpF GZ59_25020 type III secretion protein HrpF hrpG GZ59_25010 type III secretion protein HrpG hrcC GZ59_25000 type III secretion protein HrcC hrpT GZ59_24990 type III secretion lipoprotein hrpV GZ59_24980 type III secretion protein HrpV hrpN GZ59_24970 harpin (terminator conf=88, tail_score=-4.58786) (terminator conf=89, tail_score=-4.44797) >HrpL alternative sigma factor [nhmmer score 13.8 E-value 0.58 Pos=-106] hrpA GZ59_25070 type III secretion protein, hrp pilus subunit (terminator conf=100, tail_score=-4.96501) hrpB GZ59_25060 type III secretion protein HrpB hrcJ GZ59_25050 type III secretion protein HrcJ hrpD GZ59_25040 type III secretion protein HrpD hrpE GZ59_25030 type III secretion protein HrpE hrpF GZ59_25020 type III secretion protein HrpF hrpG GZ59_25010 type III secretion protein HrpG hrcC GZ59_25000 type III secretion protein HrcC hrpT GZ59_24990 type III secretion lipoprotein hrpV GZ59_24980 type III secretion protein HrpV hrpN GZ59_24970 harpin (terminator conf=88, tail_score=-4.58786) (terminator conf=89, tail_score=-4.44797) >RpoN alternative sigma factor [nhmmer score 9.6 E-value 9.2 Pos=-67] hrpL GZ59_25120 RNA polymerase sigma subunit, ECF subfamily hrpL GZ59_25120 RNA polymerase sigma subunit, ECF subfamily >Fur [nhmmer score 8.3 E-value 49.0 Pos=-266] >HrpS [nhmmer score 15.4 E-value 0.11 Pos=-174] hrpJ GZ59_25130 type III secretion regulator YopN/LcrE/InvE/MxiC hrcV GZ59_25140 type III secretion protein hrpQ GZ59_25150 type III secretion protein hrcN GZ59_25160 type III secretion protein HrcN hrpO GZ59_25170 type III secretion protein HrpO hrpP GZ59_25180 type III secretion protein HrpP hrcQ GZ59_25190 type III secretion protein HrcQ hrcR GZ59_25200 type III secretion protein HrcR hrcS GZ59_25210 type III secretion protein HrcS hrcT GZ59_25220 type III secretion protein HrcT hrcU GZ59_25230 type III secretion protein HrcU >HrpL alternative sigma factor [nhmmer score 12.8 E-value 1.2 Pos=-93] hrpJ GZ59_25130 type III secretion regulator YopN/LcrE/InvE/MxiC hrcV GZ59_25140 type III secretion protein hrpQ GZ59_25150 type III secretion protein hrcN GZ59_25160 type III secretion protein HrcN hrpO GZ59_25170 type III secretion protein HrpO hrpP GZ59_25180 type III secretion protein HrpP hrcQ GZ59_25190 type III secretion protein HrcQ hrcR GZ59_25200 type III secretion protein HrcR hrcS GZ59_25210 type III secretion protein HrcS hrcT GZ59_25220 type III secretion protein HrcT hrcU GZ59_25230 type III secretion protein HrcU >NtrC [nhmmer score 8.5 E-value 30.0 Pos=-295] - GZ59_25270 putative oxidoreductase - GZ59_25280 flavodoxin - GZ59_25290 putative cytochrome P450 >RpoN alternative sigma factor [nhmmer score 11.3 E-value 2.5 Pos=-143] - GZ59_25320 putative permease (terminator conf=100, tail_score=-3.42346) - GZ59_25350 N-acylamino acid racemase - GZ59_25360 ABC transporter permease protein - GZ59_25370 ABC transporter ATP-binding protein >FNR [nhmmer score 8.0 E-value 38.0 Pos=-311] >CRP [nhmmer score 6.9 E-value 95.0 Pos=-107] - GZ59_25380 putative phosphatase (terminator conf=82, tail_score=-2.79501) >PurR [nhmmer score 8.4 E-value 19.0 Pos=-168] - GZ59_25420 putative short-chain dehydrogenase - GZ59_25410 putative phosphotransferase - GZ59_25400 aminotransferase class-III >RpoN alternative sigma factor [nhmmer score 12.5 E-value 1.0 Pos=-147] - GZ59_25450 ABC transporter, periplasmic binding protein - GZ59_25440 ABC transporter, permease protein - GZ59_25430 ABC transporter, ATPase (terminator conf=100, tail_score=-3.54543) (terminator conf=100, tail_score=-5.40072) >NtrC [nhmmer score 7.3 E-value 75.0 Pos=-165] >RpoN alternative sigma factor [nhmmer score 11.7 E-value 1.9 Pos=-59] - GZ59_25490 polyamine ABC transporter, ATP-binding protein - GZ59_25500 Putative amino acid exporter - GZ59_25590 putative DNA-binding protein >PhoP [nhmmer score 9.0 E-value 25.0 Pos=-83] - GZ59_25600 catabolic threonine dehydratase - GZ59_25610 Ornithine cyclodeaminase - GZ59_25620 hypothetical protein (terminator conf=80, tail_score=-3.35029) >FNR [nhmmer score 6.7 E-value 110.0 Pos=-146] >NarP [nhmmer score 6.9 E-value 130.0 Pos=-295] >HexR [nhmmer score 12.2 E-value 2.3 Pos=-620] narG GZ59_25690 nitrate reductase, alpha subunit narH GZ59_25680 respiratory nitrate reductase 1 beta chain narJ GZ59_25670 respiratory nitrate reductase 1 delta chain narI GZ59_25660 respiratory nitrate reductase 1 gamma chain (terminator conf=100, tail_score=-4.79053) (terminator conf=100, tail_score=-4.11484) narK GZ59_25700 nitrite extrusion protein >FNR [nhmmer score 7.5 E-value 56.0 Pos=-208] >NarP [nhmmer score 7.2 E-value 97.0 Pos=-154], [nhmmer score 7.1 E-value 110.0 Pos=-43] narX GZ59_25710 nitrate/nitrite sensor protein NarX narL GZ59_25720 nitrate/nitrite response regulator >GalR [nhmmer score 10.4 E-value 4.9 Pos=-130] - GZ59_25730 acyltransferase 3 >RpoE alternative sigma factor [nhmmer score 6.1 E-value 190.0 Pos=-119] >ScrR [nhmmer score 12.5 E-value 0.73 Pos=-35] - GZ59_25740 putative exported protein chaC GZ59_25750 putative cation transport protein >CRP [nhmmer score 8.6 E-value 24.0 Pos=-580] >Fur [nhmmer score 9.4 E-value 22.0 Pos=-67] - GZ59_25760 putative siderophore-interacting protein >CpxR [nhmmer score 8.8 E-value 32.0 Pos=-246] chaA GZ59_25770 putative calcium/proton antiporter dauA GZ59_25790 C4-dicarboxylic acid transporter folM GZ59_25800 Dihydromonapterin reductase >RpoE alternative sigma factor [nhmmer score 6.2 E-value 180.0 Pos=-272] - GZ59_25890 Diguanylate cyclase/phosphodiesterase with GAF sensor - GZ59_25900 putative protease >CpxR [nhmmer score 8.5 E-value 40.0 Pos=-155] >FliA alternative sigma factor [nhmmer score 8.2 E-value 44.0 Pos=-110] aer1 GZ59_25960 aerotaxis receptor ldhA GZ59_25970 D-lactate dehydrogenase - GZ59_25980 putative lipoprotein >OxyR [nhmmer score 7.9 E-value 49.0 Pos=-304] - GZ59_25990 hypothetical protein >FNR [nhmmer score 8.0 E-value 40.0 Pos=-54] fnrS GZ59_26040 - (terminator conf=100, tail_score=-5.96219) (terminator conf=83, tail_score=-3.41602) (terminator conf=83, tail_score=-3.41234) >RpoN alternative sigma factor [nhmmer score 13.0 E-value 0.69 Pos=-114] pspA GZ59_26160 phage shock protein A pspB GZ59_26150 phage shock protein B pspC GZ59_26140 phage shock protein C (terminator conf=79, tail_score=-5.24531) - GZ59_26130 hypothetical protein - GZ59_26120 putative membrane protein (terminator conf=100, tail_score=-4.14257) - GZ59_26110 putative peptidase tyrR GZ59_26100 transcriptional regulator (terminator conf=100, tail_score=-4.23615) (terminator conf=100, tail_score=-4.23615) tyrR GZ59_26100 transcriptional regulator - GZ59_26110 putative peptidase (terminator conf=100, tail_score=-4.14257) - GZ59_26120 putative membrane protein - GZ59_26130 hypothetical protein (terminator conf=79, tail_score=-5.24531) pspC GZ59_26140 phage shock protein C pspB GZ59_26150 phage shock protein B pspA GZ59_26160 phage shock protein A >PspF [nhmmer score 11.9 E-value 1.9 Pos=-115], [nhmmer score 10.9 E-value 4.1 Pos=-48] pspF GZ59_26170 psp operon transcriptional activator >Fur [nhmmer score 10.3 E-value 11.0 Pos=-59] ryhB GZ59_26190 - celV GZ59_26180 endoglucanase V (terminator conf=100, tail_score=-4.86731) >SlyA [nhmmer score 8.9 E-value 25.0 Pos=-71] - GZ59_26280 hypothetical protein (terminator conf=84, tail_score=-4.33956) >Rob [nhmmer score 10.7 E-value 5.3 Pos=-84] >CpxR [nhmmer score 7.3 E-value 110.0 Pos=-151] - GZ59_26300 putative NADH:flavin oxidoreductase (terminator conf=93, tail_score=-4.12942) - GZ59_26290 putative thiamine biosynthesis protein (terminator conf=86, tail_score=-5.48213) (terminator conf=100, tail_score=-6.17268) lfaA GZ59_26310 glycosyl hydrolase (terminator conf=79, tail_score=-3.96624) lfaT GZ59_26320 hexuronate transporter >UxuR [nhmmer score 15.5 E-value 0.11 Pos=-177] >LfaR [nhmmer score 13.3 E-value 0.98 Pos=-118], [nhmmer score 10.3 E-value 9.6 Pos=-40] lfaR GZ59_26330 transcriptional repressor araD GZ59_26390 L-ribulose-5-phosphate 4-epimerase >Rob [nhmmer score 13.3 E-value 0.74 Pos=-193] osmB GZ59_26400 osmotically inducible lipoprotein B (terminator conf=89, tail_score=-2.83894) >ArgR [nhmmer score 13.5 E-value 0.67 Pos=-51] >FNR [nhmmer score 8.4 E-value 28.0 Pos=-56] - GZ59_26490 hypothetical protein - GZ59_26480 hypothetical protein - GZ59_26470 glycerol kinase - GZ59_26460 putative xylose isomerase (terminator conf=77, tail_score=-3.48182) >ArgR [nhmmer score 18.0 E-value 0.021 Pos=-35], [nhmmer score 13.5 E-value 0.63 Pos=-53] - GZ59_26530 - - GZ59_26520 putative lipoprotein - GZ59_26510 ABC transporter related protein - GZ59_26500 putative sugar ABC transporter, permease protein - GZ59_26490 hypothetical protein - GZ59_26480 hypothetical protein - GZ59_26470 glycerol kinase - GZ59_26460 putative xylose isomerase (terminator conf=77, tail_score=-3.48182) >PhoP [nhmmer score 9.8 E-value 15.0 Pos=-108] acnA GZ59_26580 aconitate hydratase 1 (terminator conf=84, tail_score=-2.60508) (terminator conf=93, tail_score=-4.02856) - GZ59_26590 sodium:dicarboxylate symporter >ArcA [nhmmer score 7.9 E-value 39.0 Pos=-452] gst GZ59_26610 glutathione S-transferase (terminator conf=100, tail_score=-3.89354) >PurR [nhmmer score 8.9 E-value 13.0 Pos=-75] pdxY GZ59_26620 pyridoxamine kinase (terminator conf=100, tail_score=-3.74542) >FliA alternative sigma factor [nhmmer score 8.3 E-value 40.0 Pos=-257] slyB GZ59_26670 outer membrane lipoprotein SlyB pdxH GZ59_26640 pyridoxamine 5'-phosphate oxidase mliC GZ59_26650 Membrane-bound lysozyme inhibitor of C-type lysozyme anmK GZ59_26660 anhydro-N-acetylmuramic acid kinase >CpxR [nhmmer score 10.4 E-value 9.7 Pos=-118] >UxuR [nhmmer score 9.6 E-value 9.4 Pos=-71] slyB GZ59_26670 outer membrane lipoprotein SlyB (terminator conf=100, tail_score=-3.95378) - GZ59_26740 hypothetical protein >PurR [nhmmer score 6.5 E-value 91.0 Pos=-59] purR GZ59_26750 purine nucleotide synthesis repressor >FruR [nhmmer score 10.0 E-value 5.6 Pos=-116] lctP GZ59_26800 L-lactate permease ykgE GZ59_26810 putative L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE ykgF GZ59_26820 putative L-lactate dehydrogenase, Fe-S cluster-binding subunit YkgF ykgG GZ59_26830 putative L-lactate dehydrogenase >RpoN alternative sigma factor [nhmmer score 13.6 E-value 0.45 Pos=-227] - GZ59_26900 urea carboxylase-associated ABC transporter, periplasmic substrate-binding component - GZ59_26890 urea carboxylase-associated ABC transporter, permease component - GZ59_26880 urea carboxylase-associated ABC transporter, ATPase component - GZ59_26870 urea carboxylase-associated protein 2 - GZ59_26860 urea carboxylase-associated protein 1 - GZ59_26850 hypothetical protein - GZ59_26840 urea carboxylase (terminator conf=100, tail_score=-3.92592) >Fur [nhmmer score 8.9 E-value 30.0 Pos=-178] - GZ59_27000 short chain dehydrogenase - GZ59_27010 putative zinc-binding dehydrogenase narP GZ59_27040 nitrate/nitrite response regulator narQ GZ59_27050 nitrate/nitrite sensor protein >NarP [nhmmer score 8.2 E-value 43.0 Pos=-111] napF GZ59_27060 ferredoxin-type protein napD GZ59_27070 NapD family protein napA GZ59_27080 periplasmic nitrate reductase napG GZ59_27090 ferredoxin-type protein NapG napH GZ59_27100 ferredoxin-type protein NapH napB GZ59_27110 diheme cytochrome C protein napC GZ59_27120 cytochrome C-type protein (terminator conf=77, tail_score=-4.56775) (terminator conf=85, tail_score=-4.25104) >NarP [nhmmer score 7.8 E-value 59.0 Pos=-88] >FNR [nhmmer score 8.8 E-value 21.0 Pos=-111] ccmA GZ59_27210 heme exporter protein CcmA ccmB GZ59_27200 heme exporter protein B ccmC GZ59_27190 heme exporter protein C ccmD GZ59_27180 heme exporter protein D ccmE GZ59_27170 cytochrome C-type biogenesis protein ccmF GZ59_27160 cytochrome C-type biogenesis protein dsbE GZ59_27150 thiol:disulfide interchange protein ccmH1 GZ59_27140 cytochrome C-type biogenesis protein ccmH2 GZ59_27130 cytochrome C-type biogenesis protein (terminator conf=84, tail_score=-5.0916) >NsrR [nhmmer score 9.8 E-value 8.8 Pos=-141] >KdgR [nhmmer score 9.1 E-value 20.0 Pos=-150] >FNR [nhmmer score 9.2 E-value 15.0 Pos=-155] nrfA GZ59_27280 cytochrome c552 precursor nrfB GZ59_27270 cytochrome C-type protein nrfC GZ59_27260 nitrite reductase complex component NrfC nrfD GZ59_27250 nitrite reductase complex component NrfD nrfE GZ59_27240 cytochrome C-type biogenesis protein nrfF GZ59_27230 formate-dependent nitrite reductase complex subunit NrfF nrfG GZ59_27220 formate-dependent nitrite reductase complex subunit NrfG ccmA GZ59_27210 heme exporter protein CcmA ccmB GZ59_27200 heme exporter protein B ccmC GZ59_27190 heme exporter protein C ccmD GZ59_27180 heme exporter protein D ccmE GZ59_27170 cytochrome C-type biogenesis protein ccmF GZ59_27160 cytochrome C-type biogenesis protein dsbE GZ59_27150 thiol:disulfide interchange protein ccmH1 GZ59_27140 cytochrome C-type biogenesis protein ccmH2 GZ59_27130 cytochrome C-type biogenesis protein (terminator conf=84, tail_score=-5.0916) (terminator conf=100, tail_score=-6.35605) arbG GZ59_27340 beta-glucoside operon antiterminator >KdgR [nhmmer score 10.8 E-value 5.2 Pos=-260] >FruR [nhmmer score 9.7 E-value 7.0 Pos=-241] pykF GZ59_27360 pyruvate kinase I (terminator conf=100, tail_score=-5.84432) >FNR [nhmmer score 7.0 E-value 87.0 Pos=-166] ldtE GZ59_27380 putative L,D-transpeptidase (terminator conf=100, tail_score=-4.23892) (terminator conf=100, tail_score=-5.95539) (terminator conf=100, tail_score=-6.12458) sufE GZ59_27390 sulfur transfer protein sufS GZ59_27400 selenocysteine lyase sufD GZ59_27410 FeS assembly protein SufD sufC GZ59_27420 FeS assembly protein SufC sufB GZ59_27430 FeS assembly protein SufB sufA GZ59_27440 Fe-S cluster assembly protein >Rob [nhmmer score 10.7 E-value 5.4 Pos=-248] >SlyA [nhmmer score 8.6 E-value 32.0 Pos=-47] >Fur [nhmmer score 14.2 E-value 0.49 Pos=-38] - GZ59_27450 hypothetical protein >RcsB [nhmmer score 7.2 E-value 87.0 Pos=-151], [nhmmer score 7.1 E-value 96.0 Pos=-49] rprA GZ59_27490 - apbE GZ59_27500 thiamine biosynthesis lipoprotein ppsA GZ59_27510 phosphoenolpyruvate synthase >KdgR [nhmmer score 14.0 E-value 0.46 Pos=-95] psrP GZ59_27520 Phosphoenolpyruvate synthase regulatory protein (terminator conf=100, tail_score=-5.67967) - GZ59_27550 GntR-family transcriptional regulator >CRP [nhmmer score 7.6 E-value 56.0 Pos=-135] aglA2 GZ59_27560 PTS system, alpha-glucoside-specific IIBC component aglB2 GZ59_27570 6-phospho-alpha-glucosidase (terminator conf=86, tail_score=-4.02736) >Fur [nhmmer score 10.9 E-value 6.7 Pos=-60] hmuS GZ59_27580 Hemin-degrading family protein hmuT GZ59_27590 hemin-binding periplasmic protein hmuU GZ59_27600 hemin transport system permease protein hmuV GZ59_27610 hemin transport system ATP-binding protein (terminator conf=89, tail_score=-2.89039) gntT GZ59_27640 high-affinity gluconate transporter >CRP [nhmmer score 10.0 E-value 8.0 Pos=-115] gntV GZ59_27650 gluconokinase gntR_1 GZ59_27660 gluconate utilization system Gnt-I transcriptional repressor >CRP [nhmmer score 11.2 E-value 3.0 Pos=-414] >FruR [nhmmer score 9.0 E-value 12.0 Pos=-378] edd GZ59_27670 phosphogluconate dehydratase - GZ59_27690 ABC transporter related btuE GZ59_27700 putative vitamin B12 transport periplasmic protein - GZ59_27710 transport system permease protein - GZ59_27720 putative methyltransferase - GZ59_27730 Cupin domain protein related to quercetin dioxygenase >Fur [nhmmer score 10.8 E-value 7.1 Pos=-61] - GZ59_27740 putative Crp/Fnr-family of transcriptional regulator - GZ59_27750 hypothetical protein >NifA [nhmmer score 6.6 E-value 120.0 Pos=-230] >RcsB [nhmmer score 8.2 E-value 41.0 Pos=-258] umoD GZ59_27860 Glycine zipper 2TM domain protein (terminator conf=100, tail_score=-5.63103) >PdhR [nhmmer score 13.9 E-value 0.33 Pos=-138] >FNR [nhmmer score 14.9 E-value 0.17 Pos=-154] ndh GZ59_27870 NADH dehydrogenase (terminator conf=100, tail_score=-5.20333) >CRP [nhmmer score 7.9 E-value 43.0 Pos=-164] >Mlc [nhmmer score 14.1 E-value 0.55 Pos=-299] ptsG GZ59_27960 PTS system, glucose-specific IIBC component (terminator conf=100, tail_score=-5.39755) >LexA [nhmmer score 15.0 E-value 0.21 Pos=-37] dinI GZ59_28160 DNA-damage-inducible protein I - GZ59_28170 hypothetical protein (terminator conf=79, tail_score=-3.89814) >HexR [nhmmer score 10.6 E-value 7.8 Pos=-141] bssS GZ59_28180 biofilm regulator BssS (terminator conf=100, tail_score=-4.14874) >ArgR [nhmmer score 16.9 E-value 0.049 Pos=-140] - GZ59_28190 putative membrane protein - GZ59_28200 putative exported protein (terminator conf=95, tail_score=-4.66537) >FliA alternative sigma factor [nhmmer score 12.8 E-value 1.3 Pos=-455] >NsrR [nhmmer score 10.0 E-value 7.5 Pos=-567] >PhoP [nhmmer score 8.7 E-value 37.0 Pos=-592] - GZ59_28280 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.84381) (terminator conf=79, tail_score=-5.1675) - GZ59_28290 hypothetical protein - GZ59_28300 putative exported protein >NarP [nhmmer score 8.7 E-value 31.0 Pos=-81] - GZ59_28310 hypothetical protein - GZ59_28320 hypothetical protein (terminator conf=100, tail_score=-4.55798) - GZ59_28380 - >CpxR [nhmmer score 9.2 E-value 25.0 Pos=-89] yccA GZ59_28390 Modulator of FtsH protease, inner membrane protein (terminator conf=100, tail_score=-6.23209) (terminator conf=91, tail_score=-5.4505) - GZ59_28400 hypothetical protein - GZ59_28490 hypothetical protein >LexA [nhmmer score 15.5 E-value 0.15 Pos=-40] sulA GZ59_28500 cell division inhibitor (terminator conf=80, tail_score=-4.75356) >RcsB [nhmmer score 8.7 E-value 27.0 Pos=-358] ompA GZ59_28510 outer-membrane protein A (terminator conf=100, tail_score=-5.77632) >FadR [nhmmer score 6.5 E-value 130.0 Pos=-87] >FabR [nhmmer score 18.4 E-value 0.011 Pos=-55] fabA GZ59_28540 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (terminator conf=84, tail_score=-2.59526) (terminator conf=84, tail_score=-2.63631) - GZ59_28550 hypothetical protein (terminator conf=84, tail_score=-4.41047) betA GZ59_28560 choline dehydrogenase betB GZ59_28570 betaine aldehyde dehydrogenase betI GZ59_28580 TetR-family transcriptional regulator >BetI [nhmmer score 21.9 E-value 0.00088 Pos=-273] >Fur [nhmmer score 8.8 E-value 35.0 Pos=-257] betT GZ59_28590 high-affinity choline transport protein (terminator conf=100, tail_score=-4.77896) >KdgR [nhmmer score 11.0 E-value 4.8 Pos=-55] - GZ59_28600 Ribose/galactose isomerase (terminator conf=100, tail_score=-5.63504) >CRP [nhmmer score 6.2 E-value 160.0 Pos=-203] fliA GZ59_28640 RNA polymerase sigma factor for flagellar operon >FliA alternative sigma factor [nhmmer score 8.7 E-value 29.0 Pos=-97] fliC GZ59_28730 flagellin (terminator conf=100, tail_score=-5.67063) >FliA alternative sigma factor [nhmmer score 11.3 E-value 4.2 Pos=-68] fliD GZ59_28740 flagellar hook-associated protein 2 fliS GZ59_28750 flagellar protein FliS fliT GZ59_28760 flagellar protein FliT (terminator conf=89, tail_score=-4.61353) >PhoP [nhmmer score 8.8 E-value 32.0 Pos=-58] fliL GZ59_28840 flagellar protein FliL fliM GZ59_28850 flagellar motor switch protein FliM fliN GZ59_28860 flagellar motor switch protein FliN fliO GZ59_28870 flagellar protein FliO fliP GZ59_28880 flagellar biosynthetic protein FliP fliQ GZ59_28890 flagellar biosynthetic protein FliQ fliR GZ59_28900 flagellar biosynthetic protein FliR >FliA alternative sigma factor [nhmmer score 8.6 E-value 32.0 Pos=-118] flgK GZ59_28920 flagellar hook-associated protein 1 flgL GZ59_28910 flagellar hook-associated protein 3 (terminator conf=83, tail_score=-5.49234) (terminator conf=77, tail_score=-3.76387) >FliA alternative sigma factor [nhmmer score 15.1 E-value 0.23 Pos=-135] flgM GZ59_29030 negative regulator of flagellin synthesis flgN GZ59_29040 flagella synthesis protein (terminator conf=87, tail_score=-4.39386) >FliA alternative sigma factor [nhmmer score 17.6 E-value 0.035 Pos=-60] cheD GZ59_29120 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-4.0031) >RcsB [nhmmer score 7.8 E-value 55.0 Pos=-255] >CRP [nhmmer score 10.9 E-value 3.7 Pos=-341] flhD GZ59_29180 flagellar transcriptional activator FlhD flhC GZ59_29170 flagellar transcriptional activator FlhC motA GZ59_29160 chemotaxis protein MotA motB GZ59_29150 chemotaxis protein MotB cheA GZ59_29140 signal transduction histidine kinase CheA cheW GZ59_29130 chemotaxis protein cheD GZ59_29120 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-4.0031) - GZ59_29190 EamA-like transporter family protein >Rob [nhmmer score 12.1 E-value 1.9 Pos=-275] >CRP [nhmmer score 5.8 E-value 230.0 Pos=-217] trg GZ59_29200 methyl-accepting chemotaxis protein (terminator conf=86, tail_score=-3.25877) >FliA alternative sigma factor [nhmmer score 7.2 E-value 92.0 Pos=-187] trg GZ59_29200 methyl-accepting chemotaxis protein (terminator conf=86, tail_score=-3.25877) >NifA [nhmmer score 6.5 E-value 130.0 Pos=-134] nifB GZ59_29410 femo cofactor biosynthesis protein nifQ GZ59_29400 nitrogen fixation protein nifQ GZ59_29400 nitrogen fixation protein nifB GZ59_29410 femo cofactor biosynthesis protein nifA GZ59_29420 nif-specific regulatory protein nifL GZ59_29430 nitrogen fixation regulatory protein >NifA [nhmmer score 8.3 E-value 33.0 Pos=-353] nifF GZ59_29440 flavodoxin (terminator conf=100, tail_score=-5.27938) >RpoN alternative sigma factor [nhmmer score 15.4 E-value 0.11 Pos=-87] nifF GZ59_29440 flavodoxin (terminator conf=100, tail_score=-5.27938) >RpoN alternative sigma factor [nhmmer score 13.7 E-value 0.29 Pos=-102] >CRP [nhmmer score 10.5 E-value 5.4 Pos=-112] >NifA [nhmmer score 6.5 E-value 130.0 Pos=-203] nifU GZ59_29500 nitrogen fixation protein nifS GZ59_29490 cysteine desulfurase nifV GZ59_29480 homocitrate synthase nifW GZ59_29470 nitrogenase stabilizing/protective protein nifZ GZ59_29460 nitrogen fixation protein NifZ nifM GZ59_29450 nitrogen fixation protein NifM (terminator conf=100, tail_score=-4.09685) >RpoN alternative sigma factor [nhmmer score 13.2 E-value 0.44 Pos=-59] >NifA [nhmmer score 9.1 E-value 18.0 Pos=-109] nifE GZ59_29530 nitrogenase iron-molybdenum cofactor biosynthesis protein nifN GZ59_29520 nitrogenase iron-molybdenum cofactor biosynthesis protein nifX GZ59_29510 nitrogen fixation protein (terminator conf=100, tail_score=-5.93809) (terminator conf=89, tail_score=-4.87665) (terminator conf=90, tail_score=-4.82901) nifY GZ59_29560 nitrogen fixation protein nifT GZ59_29570 nitrogen fixation protein nifK GZ59_29580 nitrogenase molybdenum-iron protein beta chain nifD GZ59_29590 nitrogenase molybdenum-iron protein alpha chain nifH GZ59_29600 nitrogenase iron protein >NifA [nhmmer score 9.1 E-value 18.0 Pos=-248] nifJ GZ59_29610 pyruvate-flavodoxin oxidoreductase - GZ59_29620 sulfate transporter >RpoN alternative sigma factor [nhmmer score 6.6 E-value 95.0 Pos=-121] nifJ GZ59_29610 pyruvate-flavodoxin oxidoreductase - GZ59_29620 sulfate transporter >FliA alternative sigma factor [nhmmer score 9.0 E-value 24.0 Pos=-77] - GZ59_29620 sulfate transporter - GZ59_29760 MmgE/PrpD family dehydratase >KdgR [nhmmer score 9.3 E-value 17.0 Pos=-319] >PhoP [nhmmer score 11.7 E-value 3.3 Pos=-303] - GZ59_29770 ABC transporter permease protein - GZ59_29780 ABC transporter permease protein - GZ59_29790 ABC-transporter ATP-binding protein - GZ59_29800 putative branched-chain amino acid aminotransferase >LexA [nhmmer score 12.3 E-value 1.8 Pos=-45] - GZ59_29830 MutT-like protein >RpoN alternative sigma factor [nhmmer score 11.6 E-value 2.0 Pos=-193] >CRP [nhmmer score 6.2 E-value 170.0 Pos=-199] nasF GZ59_30010 nitrate-binding protein nasE GZ59_30000 nitrate ABC transporter, inner membrane subunit nasD GZ59_29990 nitrate transport protein nasB GZ59_29980 nitrite reductase (NAD(P)H), large subunit nasA GZ59_29970 nitrate reductase nirE GZ59_29960 uroporphyrin-III C-methyltransferase - GZ59_29950 hypothetical protein >RpoN alternative sigma factor [nhmmer score 9.9 E-value 7.3 Pos=-60] nasR GZ59_30020 nitrate-and nitrite-responsive transcription antiterminator (terminator conf=100, tail_score=-3.54543) (terminator conf=100, tail_score=-5.61881) >NarP [nhmmer score 6.8 E-value 130.0 Pos=-273] fdhE GZ59_30100 FdhE protein >ArcA [nhmmer score 9.5 E-value 11.0 Pos=-42] >Fur [nhmmer score 14.1 E-value 0.55 Pos=-52] hutW GZ59_30160 putative coproporphyrinogen oxidase hutX GZ59_30150 putative heme utilization carrier protein HutX hutY GZ59_30140 atypical short chain dehydrogenase - GZ59_30130 hypothetical protein >CRP [nhmmer score 12.8 E-value 0.86 Pos=-105], [nhmmer score 8.4 E-value 29.0 Pos=-48] - GZ59_30200 hypothetical protein (terminator conf=100, tail_score=-5.3658) >FruR [nhmmer score 9.5 E-value 8.1 Pos=-260] >KdgR [nhmmer score 10.1 E-value 9.0 Pos=-489] nuoA GZ59_30360 NADH-quinone oxidoreductase chain A nuoB GZ59_30350 NADH-quinone oxidoreductase chain B nuoC GZ59_30340 NADH-quinone oxidoreductase chain C/D nuoE GZ59_30330 NADH-quinone oxidoreductase chain E nuoF GZ59_30320 NADH-quinone oxidoreductase chain F nuoG GZ59_30310 NADH-quinone oxidoreductase chain G nuoH GZ59_30300 NADH-quinone oxidoreductase chain H nuoI GZ59_30290 NADH-quinone oxidoreductase chain I nuoJ GZ59_30280 NADH-quinone oxidoreductase chain J nuoK GZ59_30270 NADH-quinone oxidoreductase chain K nuoL GZ59_30260 NADH-quinone oxidoreductase chain L nuoM GZ59_30250 NADH-quinone oxidoreductase chain M nuoN GZ59_30240 NADH-quinone oxidoreductase chain N (terminator conf=100, tail_score=-5.38047) - GZ59_30230 hypothetical protein (terminator conf=100, tail_score=-3.51879) hexA1 GZ59_30370 LysR-family transcriptional regulator of motility and virulence >NagC [nhmmer score 13.5 E-value 0.76 Pos=-277] alaA GZ59_30380 Glutamate-pyruvate aminotransferase yfbR GZ59_30390 5'-nucleotidase >FruR [nhmmer score 8.7 E-value 16.0 Pos=-86] - GZ59_30420 hypothetical protein - GZ59_30410 putative sugar phosphatase (terminator conf=100, tail_score=-5.60993) - GZ59_30400 putative sodium/sulfate transporter - GZ59_30400 putative sodium/sulfate transporter (terminator conf=100, tail_score=-5.60993) - GZ59_30410 putative sugar phosphatase - GZ59_30420 hypothetical protein - GZ59_30430 putative membrane protein >ArcA [nhmmer score 8.8 E-value 19.0 Pos=-39] ackA GZ59_30440 acetate kinase (terminator conf=100, tail_score=-4.21812) pta GZ59_30450 phosphate acetyltransferase (terminator conf=100, tail_score=-5.68489) >RpoN alternative sigma factor [nhmmer score 8.6 E-value 21.0 Pos=-153] >NtrC [nhmmer score 7.6 E-value 61.0 Pos=-311] hisJ GZ59_30550 histidine-binding periplasmic protein hisQ GZ59_30540 histidine ABC transporter permease protein hisM GZ59_30530 histidine ABC transporter permease protein hisP GZ59_30520 histidine ABC transporter ATP-binding protein (terminator conf=87, tail_score=-5.15634) >PurR [nhmmer score 11.2 E-value 2.1 Pos=-91] cvpA GZ59_30580 colicin V production protein purF GZ59_30570 amidophosphoribosyltransferase (terminator conf=100, tail_score=-3.92996) >SlyA [nhmmer score 9.2 E-value 20.0 Pos=-98] dedA GZ59_30620 DedA family inner membrane protein (terminator conf=77, tail_score=-5.24531) (terminator conf=100, tail_score=-5.75538) fabB GZ59_30680 3-oxoacyl-[acyl-carrier-protein] synthase I >FabR [nhmmer score 16.0 E-value 0.071 Pos=-121] >FadR [nhmmer score 6.1 E-value 170.0 Pos=-102] mnmC GZ59_30690 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC >PhoP [nhmmer score 10.3 E-value 10.0 Pos=-27] >FadR [nhmmer score 11.1 E-value 3.6 Pos=-54] fadI GZ59_30850 3-ketoacyl-CoA thiolase fadJ GZ59_30840 fatty acid oxidation complex alpha subunit (terminator conf=86, tail_score=-3.87638) - GZ59_30860 hypothetical protein >CRP [nhmmer score 7.6 E-value 53.0 Pos=-357], [nhmmer score 9.6 E-value 11.0 Pos=-268] >FadR [nhmmer score 8.6 E-value 25.0 Pos=-101] fadL GZ59_30870 long-chain fatty acid transport protein (terminator conf=100, tail_score=-5.72622) (terminator conf=81, tail_score=-3.1211) >FNR [nhmmer score 7.8 E-value 46.0 Pos=-141] >SlyA [nhmmer score 8.2 E-value 46.0 Pos=-168] nipE GZ59_30950 necrosis inducing protein (terminator conf=80, tail_score=-4.27519) (terminator conf=100, tail_score=-3.17798) - GZ59_30960 putative exported protein - GZ59_30970 hypothetical protein >ArcA [nhmmer score 8.4 E-value 27.0 Pos=-208] - GZ59_30980 hypothetical protein (terminator conf=76, tail_score=-4.22352) - GZ59_30990 hypothetical protein - GZ59_31000 DEAD/DEAH box helicase domain protein - GZ59_31010 molybdate ABC transporter, periplasmic binding protein - GZ59_31020 putative ABC transporter, ATP-binding protein - GZ59_31030 putative ABC-transporter, permease protein - GZ59_31040 putative ABC-transporter, periplasmic-binding protein >ModE [nhmmer score 17.5 E-value 0.036 Pos=-332] >ArcA [nhmmer score 9.7 E-value 9.6 Pos=-127] >Fur [nhmmer score 13.0 E-value 1.3 Pos=-121] - GZ59_31050 alkanal monooxygenase subunit alpha (terminator conf=93, tail_score=-4.04397) (terminator conf=100, tail_score=-4.6645) outO GZ59_31060 type 4 prepilin-like proteins leader peptide processing enzyme outN GZ59_31070 general secretion pathway protein N outM GZ59_31080 general secretion pathway protein M outL GZ59_31090 general secretion pathway protein L outK GZ59_31100 general secretion pathway protein K outJ GZ59_31110 general secretion pathway protein J outI GZ59_31120 general secretion pathway protein I outH GZ59_31130 general secretion pathway protein H - GZ59_31140 general secretion pathway protein G outF GZ59_31150 general secretion pathway protein F outE GZ59_31160 general secretion pathway protein E outD GZ59_31170 general secretion pathway protein D - GZ59_31180 general secretion pathway protein C (terminator conf=100, tail_score=-3.39595) pehX GZ59_31190 exo-poly-alpha-D-galacturonosidase - GZ59_31200 pectate lyase >DcuR [nhmmer score 14.9 E-value 0.2 Pos=-708] outB GZ59_31220 general secretion pathway protein nucS GZ59_31290 Endonuclease NucS hsdS GZ59_31300 subunit S of type I restriction-modification system hsdM GZ59_31310 subunit M of type I restriction-modification system (terminator conf=100, tail_score=-3.40444) hsdR GZ59_31320 type I restriction enzyme EcoEI R protein - GZ59_31330 putative membrane protein - GZ59_31340 hypothetical protein >MetR [MAST score 1529.96 P-value 4e-06 Pos=-181] - GZ59_31350 hypothetical protein metE2_2 GZ59_31360 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (terminator conf=78, tail_score=-3.70149) >RpoN alternative sigma factor [nhmmer score 11.0 E-value 3.1 Pos=-132] - GZ59_31350 hypothetical protein metE2_2 GZ59_31360 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (terminator conf=78, tail_score=-3.70149) - GZ59_31430 hypothetical protein - GZ59_31440 LysR-family transcriptional regulator >Fur [nhmmer score 8.9 E-value 31.0 Pos=-162] - GZ59_31450 hypothetical protein (terminator conf=89, tail_score=-4.58773) - GZ59_31460 PTS system, cellobiose-specific IIa component >PmrA [nhmmer score 15.0 E-value 0.24 Pos=-190] >Fur [nhmmer score 15.2 E-value 0.23 Pos=-164] sfuA GZ59_31470 iron(III)-binding periplasmic protein (terminator conf=100, tail_score=-3.41051) sfuB GZ59_31480 iron(III)-transport system permease protein - GZ59_31490 ABC transporter related >PmrA [nhmmer score 11.4 E-value 3.6 Pos=-80] >FNR [nhmmer score 7.8 E-value 47.0 Pos=-227] arnB GZ59_31560 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase arnC GZ59_31550 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase arnA GZ59_31540 bifunctional polymyxin resistance protein ArnA arnD GZ59_31530 4-deoxy-4-formamido-L-arabinose- phosphoundecapren ol deformylase arnT GZ59_31520 undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase arnE GZ59_31510 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE arnF GZ59_31500 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF (terminator conf=76, tail_score=-3.90729) ugd GZ59_31570 UDP-glucose 6-dehydrogenase >Rob [nhmmer score 10.7 E-value 5.2 Pos=-298] - GZ59_31580 putative diguanylate cyclase folD GZ59_31590 bifunctional protein - GZ59_31600 hypothetical protein (terminator conf=83, tail_score=-5.10461) (terminator conf=80, tail_score=-4.82901) (terminator conf=100, tail_score=-5.06735) - GZ59_31620 DoxX family protein >NarP [nhmmer score 8.4 E-value 37.0 Pos=-413] >RcsB [nhmmer score 10.2 E-value 8.2 Pos=-375] ppiB GZ59_31630 peptidyl-prolyl cis-trans isomerase B lpxH GZ59_31640 UDP-2,3-diacylglucosamine hydrolase purE GZ59_31650 phosphoribosylaminoimidazole carboxylase catalytic subunit purK GZ59_31660 phosphoribosylaminoimidazole carboxylase ATPase subunit (terminator conf=100, tail_score=-2.90723) (terminator conf=77, tail_score=-5.25735) >PurR [nhmmer score 9.2 E-value 11.0 Pos=-129] purE GZ59_31650 phosphoribosylaminoimidazole carboxylase catalytic subunit purK GZ59_31660 phosphoribosylaminoimidazole carboxylase ATPase subunit (terminator conf=100, tail_score=-2.90723) (terminator conf=77, tail_score=-5.25735) - GZ59_31690 putative transcriptional regulator pstB_1 GZ59_31700 phosphate ABC transporter ATP-binding protein pstA_1 GZ59_31710 phosphate ABC transporter permease protein PstA pstC_1 GZ59_31720 phosphate ABC transporter permease protein PstC >PhoB [nhmmer score 12.3 E-value 1.4 Pos=-96] ppk GZ59_31730 polyphosphate kinase ppx GZ59_31740 exopolyphosphatase >FliA alternative sigma factor [nhmmer score 13.2 E-value 1.0 Pos=-138] - GZ59_31750 putative motility protein (terminator conf=78, tail_score=-4.7254) (terminator conf=95, tail_score=-4.7629) galK GZ59_31800 galactokinase galT GZ59_31810 galactose-1-phosphate uridylyltransferase >GalR [nhmmer score 9.5 E-value 9.3 Pos=-326], [nhmmer score 12.8 E-value 0.75 Pos=-238] >CRP [nhmmer score 9.6 E-value 11.0 Pos=-174] galR GZ59_31820 galactose operon repressor >GalR [nhmmer score 10.8 E-value 3.4 Pos=-254] >CRP [nhmmer score 5.7 E-value 250.0 Pos=-136] lamB GZ59_31830 maltoporin (terminator conf=86, tail_score=-4.78149) (terminator conf=100, tail_score=-3.54543) (terminator conf=100, tail_score=-3.73072) malK GZ59_31840 maltose/maltodextrin transport ATP-binding protein >GalR [nhmmer score 9.8 E-value 7.6 Pos=-333] >CRP [nhmmer score 6.5 E-value 130.0 Pos=-303] malE GZ59_31850 maltose-binding periplasmic protein malF GZ59_31860 maltose transport system permease protein malG GZ59_31870 maltose/maltodextrin transport permease protein - GZ59_31880 putative arabinogalactan endo-1,4-beta-galactosidase >BaeR [nhmmer score 17.6 E-value 0.016 Pos=-164] >RcsB [MAST score 2165.58 P-value 5.82e-10 Pos=-164] mdtA GZ59_31940 multidrug efflux transporter subunit MdtA mdtB GZ59_31950 multidrug transporter subunit MdtB mdtC GZ59_31960 multidrug transporter MdtC (terminator conf=76, tail_score=-3.29829) >FNR [nhmmer score 8.2 E-value 34.0 Pos=-157], [nhmmer score 10.3 E-value 6.2 Pos=-138] - GZ59_32030 putative protease (terminator conf=100, tail_score=-4.70659) guaA GZ59_32220 GMP synthase, glutamine-hydrolyzing guaB GZ59_32230 inosine-5'-monophosphate dehydrogenase >PurR [nhmmer score 7.2 E-value 52.0 Pos=-108] xseA GZ59_32240 exodeoxyribonuclease VII, large subunit ndk GZ59_32390 nucleoside diphosphate kinase >ArcA [nhmmer score 9.5 E-value 11.0 Pos=-244] aglA GZ59_32400 PTS system, alpha-glucoside-specific IIbc component aglB GZ59_32410 6-phospho-alpha-glucosidase sseA GZ59_32420 3-mercaptopyruvate sulfurtransferase - GZ59_32430 RpiR-family transcriptional regulator >IscR [nhmmer score 11.7 E-value 1.3 Pos=-96] iscR GZ59_32530 putative transcriptional regulator (terminator conf=100, tail_score=-4.40173) >Fur [nhmmer score 9.1 E-value 28.0 Pos=-72] yiuA GZ59_32560 ferric-enterobactin ABC-transporter, substrate binding periplasmic protein yiuB GZ59_32570 ferric-enterobactin ABC-transporter, permease component yiuC GZ59_32580 ferric-enterobactin ABC transporter ATP-binding protein >PurR [nhmmer score 9.5 E-value 8.1 Pos=-282] - GZ59_32600 methyl-accepting chemotaxis protein - GZ59_32590 hypothetical protein >CpxR [nhmmer score 9.6 E-value 17.0 Pos=-152] hcaT GZ59_32640 putative hydroxycinnamic acid transporter - GZ59_32630 ABC transporter periplasmic component - GZ59_32620 putative ABC-type nickel/cobalt efflux system, permease component - GZ59_32610 Fe3+-hydroxamate ABC transporter, periplasmic component (terminator conf=100, tail_score=-5.68039) (terminator conf=79, tail_score=-5.38951) (terminator conf=100, tail_score=-5.24129) glyA GZ59_32650 serine hydroxymethyltransferase >PurR [nhmmer score 7.5 E-value 41.0 Pos=-223] >NsrR [nhmmer score 12.6 E-value 1.1 Pos=-50] hmpX GZ59_32660 flavohemoprotein (terminator conf=95, tail_score=-5.32699) >KdgR [nhmmer score 12.5 E-value 1.5 Pos=-214] paeY GZ59_32670 pectin acetylesterase (terminator conf=95, tail_score=-3.33737) pemA GZ59_32680 pectinesterase A >RpoN alternative sigma factor [nhmmer score 13.6 E-value 0.43 Pos=-34] >Fur [nhmmer score 10.0 E-value 13.0 Pos=-79] >GlrR [nhmmer score 10.8 E-value 5.1 Pos=-161], [nhmmer score 13.7 E-value 0.54 Pos=-224], [nhmmer score 10.0 E-value 9.2 Pos=-256] >FNR [nhmmer score 7.0 E-value 87.0 Pos=-201] glmY GZ59_32740 - (terminator) (terminator conf=93, tail_score=-5.15381) purL GZ59_32750 phosphoribosylformylglycinamidine synthase >PurR [nhmmer score 9.9 E-value 6.3 Pos=-100] mltF GZ59_32760 Membrane-bound lytic murein transglycosylase F - GZ59_32820 hypothetical protein (terminator conf=89, tail_score=-4.55295) - GZ59_32830 putative hemagglutinin/hemolysin-related protein >RcsB [nhmmer score 8.9 E-value 22.0 Pos=-195] >FNR [nhmmer score 7.1 E-value 82.0 Pos=-111] aggA GZ59_32840 agglutination protein - GZ59_32850 type I secretion system ATPase - GZ59_32860 HlyD family secretion protein (terminator conf=100, tail_score=-5.18995) >RcsB [nhmmer score 7.5 E-value 68.0 Pos=-308] - GZ59_32870 Diguanylate cyclase with PAS/PAC and GAF sensors (terminator conf=100, tail_score=-5.33331) - GZ59_32880 C-di-GMP phosphodiesterase >OxyR [nhmmer score 7.8 E-value 55.0 Pos=-396] >FNR [nhmmer score 6.5 E-value 130.0 Pos=-331] - GZ59_32890 putative ferredoxin >RpoE alternative sigma factor [nhmmer score 9.2 E-value 17.0 Pos=-112] rpoE GZ59_33010 RNA polymerase sigma-E factor rseA GZ59_33000 sigma-E factor negative regulator rseB GZ59_32990 sigma-E factor regulatory protein RseB rseC GZ59_32980 sigma-E factor regulatory protein RseC >FliA alternative sigma factor [nhmmer score 8.3 E-value 41.0 Pos=-119] grcA GZ59_33050 autonomous glycyl radical cofactor GrcA (terminator conf=100, tail_score=-5.4492) (terminator conf=100, tail_score=-5.4492) grcA GZ59_33050 autonomous glycyl radical cofactor GrcA >FNR [nhmmer score 12.5 E-value 1.1 Pos=-231], [nhmmer score 13.0 E-value 0.76 Pos=-178] >PmrA [nhmmer score 10.9 E-value 5.2 Pos=-224] ung GZ59_33060 uracil-DNA glycosylase >SdaR [nhmmer score 10.0 E-value 6.0 Pos=-82] sdaR GZ59_33240 Glycerate-responsive transcriptional regulator for hexarate utilization >RpoE alternative sigma factor [nhmmer score 7.5 E-value 68.0 Pos=-110] degP GZ59_33250 protease Do (terminator conf=100, tail_score=-4.00066) >FliA alternative sigma factor [nhmmer score 8.8 E-value 28.0 Pos=-144] - GZ59_33290 putative lipoprotein (terminator conf=100, tail_score=-5.77571) futC GZ59_33530 Ferric iron (Fe3+) ABC transporter, ATP-binding protein futB GZ59_33540 Ferric iron (Fe3+) ABC transporter, permease protein >Fur [nhmmer score 8.8 E-value 34.0 Pos=-299] - GZ59_33550 putative exported protein speE GZ59_33560 spermidine synthase speD GZ59_33570 S-adenosylmethionine decarboxylase proenzyme >NrdR [nhmmer score 7.0 E-value 72.0 Pos=-130] nrdH GZ59_33580 putative glutaredoxin nrdI GZ59_33590 NrdI protein nrdE GZ59_33600 ribonucleoside-diphosphate reductase, alpha subunit nrdF GZ59_33610 ribonucleoside-diphosphate reductase 2 beta chain (terminator conf=87, tail_score=-3.09878) (terminator conf=100, tail_score=-4.8143) tyrA GZ59_33820 T-protein aroF GZ59_33830 phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive >TyrR [nhmmer score 10.9 E-value 4.9 Pos=-127] yehT GZ59_33840 Stationary phase response regulator inducing yjiY - GZ59_33850 hypothetical protein >LexA [nhmmer score 14.0 E-value 0.47 Pos=-102] recA GZ59_34060 DNA strand exchange and recombination protein - GZ59_34050 regulatory protein RecX alaS GZ59_34040 alanyl-tRNA synthetase (terminator conf=93, tail_score=-4.96848) - GZ59_34080 hypothetical protein >FNR [nhmmer score 8.8 E-value 20.0 Pos=-332] >NarP [nhmmer score 9.8 E-value 13.0 Pos=-40] - GZ59_34090 hypothetical protein marC GZ59_34100 multiple antibiotic resistance protein >RcsB [nhmmer score 7.4 E-value 76.0 Pos=-416] - GZ59_34190 hypothetical protein (terminator conf=93, tail_score=-5.02323) >RcsB [nhmmer score 6.8 E-value 120.0 Pos=-230] - GZ59_34220 YD repeat protein - GZ59_34210 YD repeat protein - GZ59_34200 hypothetical protein >ScrR [nhmmer score 12.4 E-value 0.77 Pos=-51] >RpoN alternative sigma factor [nhmmer score 13.1 E-value 0.63 Pos=-89] >VasH [nhmmer score 22.9 E-value 0.00047 Pos=-244] >CRP [nhmmer score 5.8 E-value 220.0 Pos=-481] hcpC GZ59_34440 type VI secretion system effector, Hcp1 family (terminator conf=100, tail_score=-5.06052) (terminator conf=87, tail_score=-4.44797) vgrGc GZ59_34430 type VI secretion system protein VgrG - GZ59_34420 putative phospholipase - GZ59_34410 putative lipoprotein - GZ59_34400 Ankyrin (terminator conf=100, tail_score=-2.66787) - GZ59_34390 hypothetical protein - GZ59_34380 hypothetical protein rhsC GZ59_34370 RhsC deoxyribonuclease, type VI secreted rhsIc GZ59_34360 putative RhsC immunity protein (terminator conf=100, tail_score=-5.92399) >SlyA [nhmmer score 8.0 E-value 52.0 Pos=-596] tssB GZ59_34600 type VI secretion protein TssB tssC GZ59_34590 type VI secretion protein TssC tssE GZ59_34580 type VI secretion system protein TssE tssF GZ59_34570 type VI secretion protein TssF tssG GZ59_34560 type VI secretion protein TssG tagH GZ59_34550 type VI secretion-associated protein TagH tssJ GZ59_34540 type VI secretion lipoprotein TssJ tssK GZ59_34530 type VI secretion protein TssK tssL GZ59_34520 type VI secretion protein TssL tssH GZ59_34510 type VI secretion ATPase / effector chaperone vasH GZ59_34500 sigma-54 dependent transcriptional regulator vasI GZ59_34490 type VI secretion-associated protein VasI vasJ GZ59_34480 type VI secretion-associated protein VasJ tssM GZ59_34470 type VI secretion protein TssM vasL GZ59_34460 type VI secretion-associated protein VasL - GZ59_34450 TPR repeat, SEL1 subfamily protein (terminator conf=100, tail_score=-5.70522) - GZ59_34690 integrase family protein - GZ59_34700 hypothetical protein >RcsB [nhmmer score 9.8 E-value 11.0 Pos=-39] - GZ59_34710 GDSL-like Lipase/Acylhydrolase (terminator conf=100, tail_score=-5.252) - GZ59_34720 transposase IS4 family protein - GZ59_34740 - >RcsB [nhmmer score 6.9 E-value 110.0 Pos=-157] - GZ59_34750 putative exported protein (terminator conf=100, tail_score=-3.21912) >LexA [nhmmer score 15.1 E-value 0.21 Pos=-37] dinB GZ59_34820 DNA polymerase IV (terminator conf=89, tail_score=-2.74605) - GZ59_34860 hypothetical protein lpcA GZ59_34870 phosphoheptose isomerase >ArcA [nhmmer score 7.9 E-value 38.0 Pos=-179] >FadR [nhmmer score 9.1 E-value 18.0 Pos=-128] fadE GZ59_34880 acyl-coenzyme A dehydrogenase (terminator conf=100, tail_score=-4.08887) - GZ59_34890 hypothetical protein mtrK GZ59_34900 5-methylthioribose kinase >MetJ [nhmmer score 13.5 E-value 0.49 Pos=-72] - GZ59_34910 putative translation initiation factor EIF-2B >FNR [nhmmer score 8.5 E-value 26.0 Pos=-326] - GZ59_34980 type VI secretion protein VgrG - GZ59_34970 hypothetical protein - GZ59_34960 putative membrane protein - GZ59_34950 hypothetical protein - GZ59_34940 hypothetical protein - GZ59_34930 hypothetical protein - GZ59_34920 hypothetical protein (terminator conf=100, tail_score=-2.8664) mtnD2 GZ59_34990 Acireductone dioxygenase 2 mtnC GZ59_35000 Enolase-phosphatase E1 mtnB GZ59_35010 methylthioribulose-1-phosphate dehydratase >MetJ [nhmmer score 12.8 E-value 0.82 Pos=-94] - GZ59_35020 putative aminotransferase - GZ59_35030 putative carbon-nitrogen hydrolase >RpoN alternative sigma factor [nhmmer score 14.7 E-value 0.19 Pos=-102] >CpxR [nhmmer score 7.5 E-value 88.0 Pos=-117] >NtrC [nhmmer score 9.3 E-value 16.0 Pos=-587] - GZ59_35090 putative amino acid ABC transporter, substrate binding protein - GZ59_35080 putative amino acid ABC transporter, permease protein - GZ59_35070 polar amino acid ABC transporter, inner membrane subunit - GZ59_35060 putative amino acid ABC transporter, ATP-binding protein - GZ59_35050 purine catabolism protein - GZ59_35040 amidase, hydantoinase/carbamoylase family >FNR [nhmmer score 12.0 E-value 1.6 Pos=-163] emrR GZ59_35250 negative regulator of multidrug resistance gmhB GZ59_35440 D,D-heptose 1,7-bisphosphate phosphatase >MetJ [nhmmer score 11.4 E-value 2.4 Pos=-90] metN GZ59_35450 D-methionine transport ATP-binding protein metI GZ59_35460 D-methionine transport system permease protein metQ GZ59_35470 D-methionine-binding lipoprotein (terminator conf=100, tail_score=-4.15703) rcsF GZ59_35480 stimulator of colanic acid capsule synthesis - GZ59_35490 hypothetical protein proS GZ59_35500 prolyl-tRNA synthetase (terminator conf=100, tail_score=-5.63517) >RpoE alternative sigma factor [nhmmer score 8.0 E-value 46.0 Pos=-358] nlpD GZ59_35520 Activator of AmiC murein hydrolase activity rpoS GZ59_35510 RNA polymerase sigma factor (terminator conf=100, tail_score=-5.67063) (terminator conf=100, tail_score=-3.80461) - GZ59_35700 c-di-GMP binding protein >Fur [nhmmer score 8.5 E-value 44.0 Pos=-424], [nhmmer score 10.6 E-value 8.3 Pos=-219] >Rob [nhmmer score 11.5 E-value 2.9 Pos=-222] - GZ59_35710 diguanylate phosphodiesterase - GZ59_35730 periplasmic binding protein precursor >CRP [nhmmer score 6.5 E-value 130.0 Pos=-273] - GZ59_35740 putative polygalacturonase - GZ59_35750 putative 6-pyruvoyl tetrahydrobiopterin synthase >RhaS [nhmmer score 27.2 E-value 1.5e-05 Pos=-124] rhiT GZ59_35830 olgogalacturonide transporter rhiN_2 GZ59_35820 plant-inducible protein (terminator conf=87, tail_score=-3.05384) - GZ59_35840 LysR-family transcriptional regulator >Mlc [nhmmer score 10.4 E-value 9.3 Pos=-140] calB GZ59_35850 coniferyl aldehyde dehydrogenase - GZ59_35860 hypothetical protein (terminator conf=100, tail_score=-2.79796) >ModE [nhmmer score 14.0 E-value 0.47 Pos=-62] - GZ59_35880 putative TonB dependent outer membrane transporter for molybdenum - GZ59_35870 periplasmic binding protein (terminator conf=100, tail_score=-4.56597) >SdaR [nhmmer score 12.1 E-value 1.2 Pos=-359] gudX GZ59_36000 putative glucarate dehydratase gudD GZ59_35990 glucarate dehydratase garL GZ59_35980 2-dehydro-3-deoxyglucarate aldolase garR GZ59_35970 2-hydroxy-3-oxopropionate reductase - GZ59_35960 glycerate kinase (terminator conf=100, tail_score=-4.68612) gudP GZ59_36010 putative glucarate transporter >SdaR [nhmmer score 11.3 E-value 2.2 Pos=-316], [nhmmer score 11.9 E-value 1.4 Pos=-140] >CRP [nhmmer score 9.3 E-value 14.0 Pos=-204] >PhoP [nhmmer score 12.3 E-value 1.9 Pos=-25] garD GZ59_36020 (D)-galactarate dehydrogenase >FliA alternative sigma factor [nhmmer score 8.4 E-value 37.0 Pos=-80] flxA GZ59_36050 FlxA-like family protein (terminator conf=93, tail_score=-5.14563) (terminator conf=100, tail_score=-5.54192) - GZ59_36170 methyl-accepting chemotaxis protein >CRP [nhmmer score 6.8 E-value 100.0 Pos=-194] ppa GZ59_36180 inorganic pyrophosphatase (terminator conf=100, tail_score=-5.38054) (terminator conf=91, tail_score=-4.77036) ytfP GZ59_36190 Gamma-glutamyl cyclotransferase (GGCT) domain protein tamB GZ59_36200 Translocation and assembly module for autotransporter export, inner membrane subunit tamA GZ59_36210 Translocation and assembly module for autotransporter export, outer membrane subunit >ArcA [nhmmer score 10.9 E-value 3.8 Pos=-114] msrA GZ59_36220 peptide methionine sulfoxide reductase (terminator conf=82, tail_score=-4.19953) - GZ59_36230 hypothetical protein (terminator conf=100, tail_score=-4.65032) (terminator conf=100, tail_score=-3.70568) - GZ59_36240 hypothetical protein >CpxR [nhmmer score 8.7 E-value 34.0 Pos=-202] ytfJ GZ59_36250 expressed periplasmic protein (terminator conf=93, tail_score=-3.72324) - GZ59_36290 putative exported protein >ArcA [nhmmer score 8.1 E-value 32.0 Pos=-142] ipdC GZ59_36300 indole-3-pyruvate decarboxylase (terminator conf=76, tail_score=-3.03124) ytfE GZ59_36310 iron-sulfur cluster repair protein YtfE (terminator conf=100, tail_score=-4.83243) >NarP [nhmmer score 6.5 E-value 170.0 Pos=-81] >NsrR [nhmmer score 17.0 E-value 0.035 Pos=-49] ytfE GZ59_36310 iron-sulfur cluster repair protein YtfE (terminator conf=100, tail_score=-4.83243) (terminator conf=100, tail_score=-4.78157) fklB GZ59_36320 FkbP-type peptidyl-prolyl cis-trans isomerase >CpxR [nhmmer score 7.0 E-value 140.0 Pos=-383] - GZ59_36340 Opacity-associated protein A LysM-like domain protein - GZ59_36350 hypothetical protein (terminator conf=100, tail_score=-4.11216) rplI GZ59_36360 50S ribosomal protein L9 rpsR GZ59_36370 30S ribosomal protein S18 priB GZ59_36380 primosomal replication protein N rpsF GZ59_36390 30S ribosomal protein S6 - GZ59_36400 hypothetical protein >FNR [nhmmer score 7.8 E-value 46.0 Pos=-149], [nhmmer score 13.3 E-value 0.6 Pos=-126] - GZ59_36410 methyl-accepting chemotaxis protein >FliA alternative sigma factor [nhmmer score 10.0 E-value 11.0 Pos=-78] - GZ59_36410 methyl-accepting chemotaxis protein - GZ59_36440 putative exported protein - GZ59_36450 hypothetical protein >PhoP [nhmmer score 9.3 E-value 21.0 Pos=-100] - GZ59_36460 putative lipoprotein >SlyA [nhmmer score 8.2 E-value 45.0 Pos=-180], [nhmmer score 9.0 E-value 24.0 Pos=-165] - GZ59_36520 Diguanylate cyclase with PAS/PAC and GAF sensors celB GZ59_36740 PTS system, cellobiose-specific IIB component celH GZ59_36750 putative 6-phospho-beta-glucosidase celC GZ59_36760 PTS system,cellobiose-specific IIC component >CelR [nhmmer score 13.6 E-value 0.42 Pos=-194], [nhmmer score 11.6 E-value 1.9 Pos=-130], [nhmmer score 12.6 E-value 0.88 Pos=-99] celA GZ59_36770 PTS system, cellobiose-specific IIa component celR GZ59_36780 LacI family transcriptional regulator lysA GZ59_36810 diaminopimelate decarboxylase >LysR [nhmmer score 9.0 E-value 21.0 Pos=-45] lysR GZ59_36820 transcriptional activator protein LysR >PspF [nhmmer score 12.0 E-value 1.8 Pos=-154] >RpoN alternative sigma factor [nhmmer score 10.3 E-value 5.7 Pos=-81] pspG GZ59_36900 phage shock protein G (terminator conf=100, tail_score=-3.56325) >RcsB [nhmmer score 7.7 E-value 57.0 Pos=-51] - GZ59_37190 CRISPR-associated protein, Csy1 family - GZ59_37200 CRISPR-associated protein, Csy2 family - GZ59_37210 CRISPR-associated protein Cas5 - GZ59_37220 CRISPR-associated protein Csy4 - GZ59_37330 hypothetical protein uvrA GZ59_37340 excision nuclease subunit A >LexA [nhmmer score 10.9 E-value 5.2 Pos=-157] ssb GZ59_37350 single-strand binding protein (terminator conf=100, tail_score=-5.1417) rhiR GZ59_37420 LacI-family transcriptional regulator rhiF GZ59_37430 ABC transporter, membrane spanning protein rhiG GZ59_37440 ABC transporter, membrane spanning protein rhiK GZ59_37450 ABC transporter, ATP-binding protein rhiN GZ59_37460 glycosyl hydrolase family 88 - GZ59_37470 hypothetical protein >RhiR [nhmmer score 20.0 E-value 0.0041 Pos=-311], [nhmmer score 20.8 E-value 0.0023 Pos=-115] >CRP [nhmmer score 14.3 E-value 0.25 Pos=-232] >FNR [nhmmer score 6.6 E-value 120.0 Pos=-231], [nhmmer score 11.2 E-value 3.1 Pos=-209] rhiL GZ59_37480 putative rhamnogalacturonides ABC transporter, substrate-binding protein gpsK_1 GZ59_37490 glucosamine kinase gpsK_2 GZ59_37500 glucosamine kinase - GZ59_37510 putative calcineurin-like phosphoesterase (terminator conf=100, tail_score=-3.54543) >Zur [nhmmer score 19.5 E-value 0.0048 Pos=-140] - GZ59_37520 metal ion ABC transporter, ATP binding protein - GZ59_37530 metal ion ABC transporter, permease protein - GZ59_37540 ABC transporter substrate-binding protein (terminator conf=82, tail_score=-4.9448) - GZ59_37550 DeoR-family transcriptional regulator (terminator conf=82, tail_score=-4.03078) (terminator conf=79, tail_score=-4.3739) - GZ59_37560 4-hydroxythreonine-4-phosphate dehydrogenase - GZ59_37570 hypothetical protein >CRP [nhmmer score 9.4 E-value 12.0 Pos=-179] - GZ59_37580 putative alcohol dehydrogenase dapA2 GZ59_37590 putative dihydrodipicolinate synthase - GZ59_37600 putative sodium:solute symporter - GZ59_37610 Putative glycosyl hydrolase, BNR repeat protein (terminator conf=100, tail_score=-3.96624) (terminator conf=78, tail_score=-3.18366) - GZ59_37620 hypothetical protein - GZ59_37630 putative short-chain dehydrogenase >Rob [nhmmer score 12.9 E-value 1.0 Pos=-410] >CRP [nhmmer score 7.8 E-value 46.0 Pos=-356] >FNR [nhmmer score 12.4 E-value 1.2 Pos=-355] pflD GZ59_37640 formate C-acetyltransferase pflC GZ59_37650 formate-C-acetyltransferase activating enzyme (terminator conf=100, tail_score=-3.73775) sgaR GZ59_37680 Ascorbate utilization transcriptional regulator SgaR, LacI family >SgaR [nhmmer score 11.9 E-value 1.1 Pos=-90] >CRP [nhmmer score 7.3 E-value 67.0 Pos=-75] sgaA GZ59_37690 Ascorbate-specific PTS system, EIIA component sgaB GZ59_37700 Ascorbate-specific PTS system, EIIB component sgaT GZ59_37710 Ascorbate-specific PTS system, EIIC component tal GZ59_37720 fructose-6-phosphate aldolase (terminator conf=78, tail_score=-4.08216) - GZ59_37730 hypothetical protein (terminator conf=100, tail_score=-5.64274) acnB GZ59_37740 aconitate hydratase 2 >CRP [nhmmer score 6.4 E-value 140.0 Pos=-303] - GZ59_37750 putative exported protein - GZ59_37760 ArsR-family transcriptional regulator (terminator conf=87, tail_score=-3.57971) >KdgR [nhmmer score 19.6 E-value 0.0065 Pos=-35] - GZ59_37800 putative exported hydrolase (terminator conf=100, tail_score=-5.31275) aceF GZ59_37830 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase aceE GZ59_37840 pyruvate dehydrogenase e1 component pdhR GZ59_37860 pyruvate dehydrogenase complex repressor >PdhR [nhmmer score 18.3 E-value 0.012 Pos=-640] >OxyR [nhmmer score 9.5 E-value 14.0 Pos=-637] >FruR [nhmmer score 8.4 E-value 19.0 Pos=-433] >ArgR [nhmmer score 15.8 E-value 0.11 Pos=-411] >TyrR [nhmmer score 11.0 E-value 4.5 Pos=-92] aroP GZ59_37870 aromatic amino acid transport protein (terminator conf=100, tail_score=-4.51363) - GZ59_37880 Glycoside/pentoside/hexuronide transporter - GZ59_37890 putative alpha-N-arabinofuranosidase >GalR [nhmmer score 9.3 E-value 11.0 Pos=-80] - GZ59_37880 Glycoside/pentoside/hexuronide transporter - GZ59_37890 putative alpha-N-arabinofuranosidase ampE GZ59_37900 putative membrane-bound sensory transducer ampD GZ59_37910 anhydro-N-acetylmuramyl-tripeptide amidase >OxyR [nhmmer score 6.4 E-value 160.0 Pos=-266], [nhmmer score 6.6 E-value 140.0 Pos=-59] >CRP [nhmmer score 13.6 E-value 0.46 Pos=-172] >FNR [nhmmer score 7.7 E-value 52.0 Pos=-171] >DeoR [nhmmer score 9.9 E-value 12.0 Pos=-168] >PurR [nhmmer score 9.2 E-value 11.0 Pos=-128] tsx GZ59_37920 nucleoside-specific channel-forming protein (terminator conf=76, tail_score=-4.16943) nadC GZ59_37930 nicotinate-nucleotide pyrophosphorylase, carboxylating (terminator conf=77, tail_score=-4.30177) >RpoE alternative sigma factor [nhmmer score 7.4 E-value 73.0 Pos=-179] tsx GZ59_37920 nucleoside-specific channel-forming protein (terminator conf=76, tail_score=-4.16943) nadC GZ59_37930 nicotinate-nucleotide pyrophosphorylase, carboxylating (terminator conf=77, tail_score=-4.30177) >RpoE alternative sigma factor [nhmmer score 6.3 E-value 170.0 Pos=-265] ampD GZ59_37910 anhydro-N-acetylmuramyl-tripeptide amidase ampE GZ59_37900 putative membrane-bound sensory transducer >Fur [nhmmer score 9.5 E-value 19.0 Pos=-82] nadC GZ59_37930 nicotinate-nucleotide pyrophosphorylase, carboxylating (terminator conf=77, tail_score=-4.30177) lpxC GZ59_38050 UDP-3-O-(R-3-hydroxymyristoyl)-N- acetylglucosamin e deacetylase ftsZ GZ59_38060 cell division protein FtsZ ftsA GZ59_38070 cell division protein FtsA ftsQ GZ59_38080 cell division protein FtsQ ddlB GZ59_38090 D-alanine--D-alanine ligase B murC GZ59_38100 UDP-N-acetylmuramate--L-alanine ligase murG GZ59_38110 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase ftsW GZ59_38120 cell division protein FtsW murD GZ59_38130 UDP-N-acetylmuramoylalanine--D-glutamate ligase mraY GZ59_38140 phospho-N-acetylmuramoyl-pentapeptide- transferase murF GZ59_38150 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase murE GZ59_38160 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase ftsI GZ59_38170 peptidoglycan synthetase ftsL GZ59_38180 cell division protein FtsL mraW GZ59_38190 S-adenosyl-methyltransferase mraZ GZ59_38200 cell division protein MraZ >RcsB [nhmmer score 9.0 E-value 22.0 Pos=-517] - GZ59_38210 putative membrane protein lcfH GZ59_38250 putative long-chain-fatty-acid--CoA ligase >FabR [nhmmer score 13.6 E-value 0.42 Pos=-372] leuA GZ59_38270 2-isopropylmalate synthase leuB GZ59_38280 3-isopropylmalate dehydrogenase leuC GZ59_38290 3-isopropylmalate dehydratase large subunit leuD GZ59_38300 3-isopropylmalate dehydratase small subunit (terminator conf=100, tail_score=-5.75538) >LexA [nhmmer score 9.2 E-value 19.0 Pos=-67] polB GZ59_38510 DNA polymerase II hepA GZ59_38520 RNA polymerase associated protein rluA GZ59_38530 ribosomal large subunit pseudouridine synthase A >ArgR [nhmmer score 14.1 E-value 0.43 Pos=-53] carA GZ59_38690 carbamoyl-phosphate synthase small chain carB GZ59_38680 carbamoyl-phosphate synthase large chain (terminator conf=100, tail_score=-4.72272) >NhaR [nhmmer score 6.2 E-value 190.0 Pos=-125] nhaA GZ59_38780 Na+/H+ antiporter NhaA nhaR GZ59_38770 transcriptional activator of cation transport (terminator conf=100, tail_score=-5.75945) >RpoH heat shock alternative sigma factor [nhmmer score 15.0 E-value 0.12 Pos=-217] dnaK GZ59_38810 chaperone protein DnaK - GZ59_38800 - dnaJ GZ59_38790 chaperone protein DnaJ (terminator conf=100, tail_score=-5.93809) >TyrR [nhmmer score 10.2 E-value 8.6 Pos=-69] >FliA alternative sigma factor [nhmmer score 8.4 E-value 38.0 Pos=-95] - GZ59_38830 MFC transporter (terminator conf=100, tail_score=-3.53811) (terminator conf=100, tail_score=-3.53811) - GZ59_38830 MFC transporter mog GZ59_38840 molybdopterin biosynthesis protein >NarP [nhmmer score 6.8 E-value 140.0 Pos=-156] - GZ59_38850 diguanylate cyclase (terminator conf=100, tail_score=-4.82901) - GZ59_38920 putative RNA methyltransferase >FNR [nhmmer score 9.4 E-value 13.0 Pos=-342] arcA GZ59_38930 aerobic respiration control protein (terminator conf=100, tail_score=-4.8143) >TrpR [nhmmer score 16.5 E-value 0.078 Pos=-31] trpR GZ59_38980 Trp operon repressor >CRP [nhmmer score 6.1 E-value 180.0 Pos=-196] >FNR [nhmmer score 7.1 E-value 78.0 Pos=-195] >KdgR [nhmmer score 10.4 E-value 7.2 Pos=-202] - GZ59_39010 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-4.56367) >PurR [nhmmer score 7.6 E-value 37.0 Pos=-99] serA GZ59_39040 D-3-phosphoglycerate dehydrogenase >FruR [nhmmer score 12.1 E-value 1.1 Pos=-122] epd GZ59_39120 D-erythrose 4-phosphate dehydrogenase pgk GZ59_39110 phosphoglycerate kinase fbaA GZ59_39100 fructose-bisphosphate aldolase class II (terminator conf=95, tail_score=-3.3422) - GZ59_39090 putative mechanosensitive ion channel (terminator conf=100, tail_score=-5.60864) - GZ59_39160 arginine decarboxylase - GZ59_39170 hypothetical protein >MetJ [nhmmer score 8.2 E-value 28.0 Pos=-74] metK GZ59_39180 S-adenosylmethionine synthetase (terminator conf=93, tail_score=-3.8591) sprT GZ59_39190 putative metallopeptidase nucM GZ59_39200 endonuclease - GZ59_39210 hypothetical protein - GZ59_39220 hypothetical protein gshB GZ59_39230 glutathione synthetase (terminator conf=100, tail_score=-3.86346) - GZ59_39240 hypothetical protein - GZ59_39250 hypothetical protein >CRP [nhmmer score 11.1 E-value 3.2 Pos=-65] >OxyR [nhmmer score 8.5 E-value 32.0 Pos=-99] ahpC GZ59_39410 alkyl hydroperoxide reductase C22 protein (terminator conf=100, tail_score=-4.37092) ahpF GZ59_39400 alkyl hydroperoxide reductase subunit F (terminator conf=100, tail_score=-6.07969) (terminator conf=100, tail_score=-6.28967) (terminator conf=100, tail_score=-6.28967) (terminator conf=100, tail_score=-6.07969) ahpF GZ59_39400 alkyl hydroperoxide reductase subunit F (terminator conf=100, tail_score=-4.37092) ahpC GZ59_39410 alkyl hydroperoxide reductase C22 protein - GZ59_39420 putative membrane protein >DcuR [nhmmer score 12.7 E-value 1.0 Pos=-103] - GZ59_39430 hypothetical protein >CRP [nhmmer score 6.2 E-value 170.0 Pos=-38] >Fur [nhmmer score 8.7 E-value 38.0 Pos=-184] >SlyA [nhmmer score 8.6 E-value 32.0 Pos=-193] - GZ59_39450 putative exported protein >RpoN alternative sigma factor [nhmmer score 8.9 E-value 16.0 Pos=-139] - GZ59_39540 ABC transporter, substrate binding protein - GZ59_39530 ABC transporter protein, membrane protein - GZ59_39520 ABC transporter related - GZ59_39610 - - GZ59_39620 - orn GZ59_39630 oligoribonuclease >FNR [nhmmer score 8.6 E-value 25.0 Pos=-222] rsgA GZ59_39640 putative ribosome biogenesis GTPase RsgA - GZ59_39650 phosphatidylserine decarboxylase bspA GZ59_39660 putative mechanosensitive ion channel (terminator conf=87, tail_score=-4.44819) poxA GZ59_39670 putative lysyl-tRNA synthetase >Rob [nhmmer score 13.7 E-value 0.53 Pos=-240] >Fur [nhmmer score 8.7 E-value 36.0 Pos=-60] frdA GZ59_39680 fumarate reductase flavoprotein subunit frdB GZ59_39690 fumarate reductase iron-sulfur protein frdC GZ59_39700 fumarate reductase 15 kDa hydrophobic protein frdD GZ59_39710 fumarate reductase 13 kDa hydrophobic protein (terminator conf=100, tail_score=-3.54488) blc GZ59_39720 outer membrane lipoprotein (terminator conf=100, tail_score=-2.72511) nptA GZ59_39810 putative sodium/phosphate cotransporter >DcuR [nhmmer score 15.3 E-value 0.15 Pos=-146] dasS GZ59_39820 divalent anion:sodium symporter (terminator conf=93, tail_score=-4.36914) >Fur [nhmmer score 9.9 E-value 14.0 Pos=-47] foxA GZ59_39830 ferrioxamine B receptor (terminator conf=91, tail_score=-4.63928) >KdgR [nhmmer score 9.4 E-value 16.0 Pos=-85] - GZ59_39910 hypothetical protein - GZ59_39900 hypothetical protein - GZ59_39890 hypothetical protein - GZ59_39880 putative phage regluatory protein - GZ59_39870 phage regulatory protein (terminator conf=100, tail_score=-5.06451) >HexR [nhmmer score 11.0 E-value 5.9 Pos=-195] >MetR [nhmmer score 10.3 E-value 8.7; this site was probably controlling metH before prophage insertion Pos=-112] >FliA alternative sigma factor [nhmmer score 9.9 E-value 12.0 Pos=-106] >CpxR [nhmmer score 9.3 E-value 23.0 Pos=-47] iclR GZ59_40370 acetate operon repressor (terminator conf=100, tail_score=-3.54741) >IclR [nhmmer score 26.1 E-value 4.8e-05 Pos=-136] aceB GZ59_40400 malate synthase A aceA GZ59_40390 isocitrate lyase (terminator conf=93, tail_score=-3.83502) aceK GZ59_40380 isocitrate dehydrogenase kinase/phosphatase >MetJ [nhmmer score 15.4 E-value 0.11 Pos=-48] >MetR [nhmmer score 10.7 E-value 6.4 Pos=-116] metA GZ59_40410 homoserine O-succinyltransferase (terminator conf=100, tail_score=-5.9873) >Fur [nhmmer score 12.9 E-value 1.3 Pos=-129] bfd GZ59_40900 bacterioferritin-associated ferredoxin bfr GZ59_40890 bacterioferritin (terminator conf=100, tail_score=-5.50499) tufA_2 GZ59_40910 elongation factor Tu (terminator conf=100, tail_score=-3.6502) fusA GZ59_40920 elongation factor G rpsG GZ59_40930 30S ribosomal subunit protein S7 rpsL GZ59_40940 30S ribosomal subunit protein S12 dsrH GZ59_40950 putative intracellular sulfur oxidation protein dsrF GZ59_40960 putative intracellular sulfur oxidation protein dsrE GZ59_40970 putative intracellular sulfur oxidation protein - GZ59_40980 YheO domain protein >PmrA [nhmmer score 13.4 E-value 0.77 Pos=-78] pmrC GZ59_40990 putative sulfatase pmrA GZ59_41000 two-component response regulator pmrB GZ59_41010 two-component sensor kinase (terminator conf=100, tail_score=-5.5112) argD GZ59_41210 acetylornithine/succinyldiaminopimelate aminotransferase pabA GZ59_41220 glutamine amidotransferase of anthranilate synthase >SlyA [nhmmer score 13.2 E-value 0.96 Pos=-582] >CpxR [nhmmer score 7.0 E-value 130.0 Pos=-421] >CRP [nhmmer score 10.3 E-value 6.0 Pos=-357] pelA GZ59_41230 pectate lyase I (terminator conf=100, tail_score=-5.00884) >Fur [nhmmer score 11.8 E-value 3.3 Pos=-582] pelB GZ59_41240 pectate lyase II (terminator conf=100, tail_score=-5.24129) >SlyA [nhmmer score 13.7 E-value 0.63 Pos=-482] >CRP [nhmmer score 7.1 E-value 77.0 Pos=-407], [nhmmer score 6.1 E-value 180.0 Pos=-348] >FNR [nhmmer score 9.2 E-value 15.0 Pos=-406] >KdgR [nhmmer score 14.5 E-value 0.32 Pos=-290], [nhmmer score 9.4 E-value 16.0 Pos=-103] pelC GZ59_41250 pectate lyase III (terminator conf=100, tail_score=-4.99861) - GZ59_41260 pectate lyase (terminator conf=93, tail_score=-4.90906) >CpxR [nhmmer score 11.9 E-value 3.0 Pos=-91] ppiA GZ59_41270 peptidyl-prolyl cis-trans isomerase cyclophilin type (terminator conf=78, tail_score=-3.66803) (terminator conf=100, tail_score=-5.88197) (terminator conf=82, tail_score=-3.99275) - GZ59_41280 ABC transporter ATP-binding protein - GZ59_41290 ABC transporter related - GZ59_41300 ABC transporter permease protein - GZ59_41310 D-ala-D-ala transporter subunit - GZ59_41320 ABC transporter, substrate binding protein - GZ59_41330 putative mandelate racemase / muconate lactonizing enzyme >CRP [nhmmer score 6.3 E-value 150.0 Pos=-496], [nhmmer score 6.7 E-value 110.0 Pos=-342] >KdgR [nhmmer score 15.0 E-value 0.21 Pos=-455] >SdaR [nhmmer score 11.9 E-value 1.4 Pos=-362] >NarP [nhmmer score 9.4 E-value 18.0 Pos=-100] >FNR [nhmmer score 12.1 E-value 1.6 Pos=-74] nirB GZ59_41340 nitrite reductase [NAD(P)H] large subunit nirD GZ59_41350 nitrite reductase [NAD(P)H] small subunit cysG2 GZ59_41360 siroheme synthase (terminator conf=100, tail_score=-3.62775) >NtrC [nhmmer score 8.0 E-value 43.0 Pos=-449] >FNR [nhmmer score 6.7 E-value 110.0 Pos=-340] >Fur [nhmmer score 10.1 E-value 13.0 Pos=-333] >ArgR [nhmmer score 13.8 E-value 0.52 Pos=-305] >RpoN alternative sigma factor [nhmmer score 10.2 E-value 5.9 Pos=-273] occQ GZ59_41370 octopine transport system permease protein OccQ occM GZ59_41380 octopine transport system permease protein OccM occP GZ59_41390 octopine permease ATP-binding protein P (terminator conf=100, tail_score=-3.98214) nudE GZ59_41550 ADP compounds hydrolase >CRP [nhmmer score 9.1 E-value 16.0 Pos=-319] igaA GZ59_41560 intracellular growth attenuator protein - GZ59_41570 HAD-superfamily hydrolase, subfamily IA, variant 3 hslR GZ59_41580 heat shock protein hslO GZ59_41590 heat shock protein (33 kDa chaperonin) (terminator conf=100, tail_score=-5.19998) pckA GZ59_41600 phosphoenolpyruvate carboxykinase (terminator conf=100, tail_score=-4.89233) - GZ59_41630 hypothetical protein - GZ59_41640 periplasmic binding protein - GZ59_41650 major facilitator superfamily MFS_1 - GZ59_41660 putative octopine/opine/tauropine dehydrogenase - GZ59_41670 putative cystathionine beta-synthase - GZ59_41680 putative lysine/ornithine decarboxylase - GZ59_41690 TonB-dependent siderophore receptor (terminator conf=89, tail_score=-2.75997) (terminator conf=78, tail_score=-4.11216) (terminator conf=86, tail_score=-2.83867) - GZ59_41700 hypothetical protein - GZ59_41710 putative siderophore biosynthesis protein >Fur [nhmmer score 9.1 E-value 27.0 Pos=-89] - GZ59_41720 putative citrate lyase beta chain >FliA alternative sigma factor [nhmmer score 9.6 E-value 15.0 Pos=-185] - GZ59_41750 methyl-accepting chemotaxis protein (terminator conf=86, tail_score=-2.79209) cisY GZ59_41760 citrate synthase >FNR [nhmmer score 11.6 E-value 2.3 Pos=-182] tex GZ59_41770 putative RNA binding protein (terminator conf=100, tail_score=-3.72893) >KdgR [nhmmer score 16.8 E-value 0.054 Pos=-139] >CRP [nhmmer score 6.9 E-value 97.0 Pos=-87] rexZ GZ59_41780 regulator of exoenzymes >Rob [nhmmer score 10.7 E-value 5.4 Pos=-258] kdgT GZ59_41790 2-keto-3-deoxygluconate permease kduI2 GZ59_41800 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (terminator conf=100, tail_score=-4.21773) >PhoB [nhmmer score 13.5 E-value 0.55 Pos=-68] >CpxR [nhmmer score 11.2 E-value 5.2 Pos=-57] phoA GZ59_41850 alkaline phosphatase - GZ59_41840 putative exported protein - GZ59_41830 ABC transporter, ATP-binding protein - GZ59_41820 putative permease >BaeR [nhmmer score 18.0 E-value 0.012 Pos=-166], [nhmmer score 17.9 E-value 0.012 Pos=-177] >RcsB [MAST score 2856.17 P-value 2.29e-11 Pos=-166] acrD GZ59_41860 putative aminoglycoside efflux pump phoA GZ59_41850 alkaline phosphatase - GZ59_41840 putative exported protein - GZ59_41830 ABC transporter, ATP-binding protein - GZ59_41820 putative permease >IscR [nhmmer score 9.4 E-value 8.4 Pos=-37] nfuA GZ59_41890 Fe/S biogenesis protein NfuA (terminator conf=90, tail_score=-3.34812) - GZ59_41900 4-alpha-glucanotransferase malP GZ59_41910 maltodextrin phosphorylase glpR GZ59_41920 glycerol-3-phosphate regulon repressor glpG GZ59_41930 intramembrane serine protease GlpG >Fur [nhmmer score 10.7 E-value 7.5 Pos=-488] - GZ59_41950 putative glyoxalase (terminator conf=91, tail_score=-4.67942) glpD GZ59_41960 aerobic glycerol-3-phosphate dehydrogenase - GZ59_41900 4-alpha-glucanotransferase malP GZ59_41910 maltodextrin phosphorylase glpR GZ59_41920 glycerol-3-phosphate regulon repressor glpG GZ59_41930 intramembrane serine protease GlpG - GZ59_41940 Thiosulfate sulfurtransferase >CRP [nhmmer score 6.1 E-value 180.0 Pos=-144] glpD GZ59_41960 aerobic glycerol-3-phosphate dehydrogenase >GlpR [nhmmer score 10.3 E-value 7.3 Pos=-46] glpD GZ59_41960 aerobic glycerol-3-phosphate dehydrogenase >RpoE alternative sigma factor [nhmmer score 7.1 E-value 92.0 Pos=-425] - GZ59_41970 type VI secretion system Vgr family protein - GZ59_41980 hypothetical protein - GZ59_41990 hypothetical protein - GZ59_42000 hypothetical protein - GZ59_42010 hypothetical protein - GZ59_42020 hypothetical protein (terminator conf=100, tail_score=-4.58395) (terminator conf=100, tail_score=-3.72576) glgP GZ59_42030 glycogen phosphorylase glgA GZ59_42040 glycogen synthase glgC GZ59_42050 glucose-1-phosphate adenylyltransferase glgX GZ59_42060 intracellular isoamylase glgB GZ59_42070 1,4-alpha-glucan branching enzyme >FNR [nhmmer score 7.5 E-value 57.0 Pos=-350] >SlyA [nhmmer score 11.3 E-value 4.1 Pos=-251] yehU GZ59_42080 Stationary phase sensor kinase regulating yjiY gntP_1 GZ59_42130 gluconate permease >ArcA [nhmmer score 9.3 E-value 13.0 Pos=-37] - GZ59_42140 - gntR_2 GZ59_42150 - >CpxR [nhmmer score 7.7 E-value 75.0 Pos=-317], [nhmmer score 9.8 E-value 15.0 Pos=-141] >Fur [nhmmer score 9.9 E-value 15.0 Pos=-160] - GZ59_42160 Glycosyl hydrolase family 3 protein (terminator conf=86, tail_score=-2.75986) >Fur [nhmmer score 13.0 E-value 1.2 Pos=-132] - GZ59_42180 - (terminator conf=100, tail_score=-6.21477) - GZ59_42170 Quercetin 2,3-dioxygenase (terminator conf=100, tail_score=-3.87869) glpC GZ59_42190 anaerobic glycerol-3-phosphate dehydrogenase subunit C glpB GZ59_42200 anaerobic glycerol-3-phosphate dehydrogenase subunit B glpA GZ59_42210 anaerobic glycerol-3-phosphate dehydrogenase subunit A >PhoB [nhmmer score 14.3 E-value 0.28 Pos=-115] glpT GZ59_42230 glycerol-3-phosphate transporter (terminator conf=100, tail_score=-4.03234) glpQ GZ59_42240 glycerophosphoryl diester phosphodiesterase, periplasmic precursor >CRP [nhmmer score 6.5 E-value 130.0 Pos=-66] - GZ59_42320 EamA-like transporter family protein >LexA [nhmmer score 8.1 E-value 44.0 Pos=-72] uvrD GZ59_42360 DNA helicase II - GZ59_42350 cyclase family protein (terminator conf=79, tail_score=-5.31456) (terminator conf=82, tail_score=-4.89852) (terminator conf=100, tail_score=-6.02914) ilvC GZ59_42850 ketol-acid reductoisomerase >IlvY [nhmmer score 8.9 E-value 25.0 Pos=-39] ilvY GZ59_42860 LysR-family transcriptional activator of ilvC - GZ59_42870 putative exported protein murI GZ59_43080 glutamate racemase btuB GZ59_43090 vitamin B12 receptor precursor >MetJ [nhmmer score 12.6 E-value 0.96 Pos=-124] trmA GZ59_43110 tRNA (uracil-5)-methyltransferase >KdgR [nhmmer score 10.2 E-value 8.8 Pos=-144] >Fur [nhmmer score 8.5 E-value 43.0 Pos=-416] oxyR GZ59_43150 DNA-binding transcriptional dual regulator >MetJ [nhmmer score 16.5 E-value 0.048 Pos=-37] >MetR [nhmmer score 11.3 E-value 4.0 Pos=-127] metF GZ59_43160 5,10-methylenetetrahydrofolate reductase (terminator conf=100, tail_score=-3.30159) metL GZ59_43230 bifunctional aspartokinase/homoserine dehydrogenase II - GZ59_43240 O-succinylhomoserine (thiol)-lyase >MetJ [nhmmer score 12.0 E-value 1.5 Pos=-129], [nhmmer score 13.2 E-value 0.58 Pos=-113] metJ GZ59_43250 repressor of the methionine regulon (terminator conf=100, tail_score=-3.28712) metL GZ59_43230 bifunctional aspartokinase/homoserine dehydrogenase II - GZ59_43240 O-succinylhomoserine (thiol)-lyase >Zur [nhmmer score 14.7 E-value 0.18 Pos=-54] - GZ59_43260 putative iron(III) ABC transporter ATP-binding protein - GZ59_43270 putative iron(III) ABC transporter, periplasmic-binding protein - GZ59_43280 transport system permease protein (terminator conf=85, tail_score=-4.183) (terminator conf=100, tail_score=-5.06414) aguA GZ59_43450 agmatine deiminase aguB GZ59_43460 N-carbamoylputrescine amidase >VasH [nhmmer score 22.9 E-value 0.00047 Pos=-226] hcpA GZ59_43470 type VI secretion system effector, Hcp1 family (terminator conf=100, tail_score=-5.08824) vgrG GZ59_43480 type VI secretion system protein VgrG - GZ59_43490 hypothetical protein rhsA GZ59_43500 RhsA deoxyribonuclease, type VI secreted rhsIA GZ59_43510 Immunity protein RhsIA >RpoN alternative sigma factor [nhmmer score 12.7 E-value 0.91 Pos=-71] >ScrR [nhmmer score 10.3 E-value 3.7 Pos=-33] hcpA GZ59_43470 type VI secretion system effector, Hcp1 family (terminator conf=100, tail_score=-5.08824) vgrG GZ59_43480 type VI secretion system protein VgrG - GZ59_43490 hypothetical protein rhsA GZ59_43500 RhsA deoxyribonuclease, type VI secreted rhsIA GZ59_43510 Immunity protein RhsIA >FruR [nhmmer score 10.4 E-value 4.2 Pos=-138] pfkA GZ59_43640 6-phosphofructokinase isozyme I >FNR [nhmmer score 7.1 E-value 79.0 Pos=-34] - GZ59_43670 hypothetical protein (terminator conf=91, tail_score=-5.31519) (terminator conf=100, tail_score=-6.02914) >NrdR [nhmmer score 7.4 E-value 52.0 Pos=-215] - GZ59_43940 hypothetical protein - GZ59_43930 hypothetical protein (terminator conf=79, tail_score=-2.55999) (terminator conf=100, tail_score=-5.82388) cpxP GZ59_44070 putative stress resistance protein >CpxR [nhmmer score 7.2 E-value 110.0 Pos=-68] cpxR GZ59_44080 two-component response regulator cpxA GZ59_44090 two-component sensor kinase - GZ59_44100 putative exported protein - GZ59_44110 hypothetical protein - GZ59_44200 putative exported protein - GZ59_44210 hypothetical protein - GZ59_44220 DeoR-family trancriptional regulator >CRP [nhmmer score 10.0 E-value 7.7 Pos=-92] - GZ59_44230 putative oxidoreductase - GZ59_44240 hypothetical protein - GZ59_44250 putative sugar aldolase - GZ59_44260 Putative hydroxypyruvate isomerase - GZ59_44270 Putative GntP family transporter (terminator conf=100, tail_score=-4.37527) >FliA alternative sigma factor [nhmmer score 13.6 E-value 0.7 Pos=-151] - GZ59_44290 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.9003) >CpxR [nhmmer score 7.7 E-value 75.0 Pos=-697] >FNR [nhmmer score 8.6 E-value 25.0 Pos=-528] - GZ59_44300 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-5.34555) >Rob [nhmmer score 10.8 E-value 5.0 Pos=-478] - GZ59_44310 methyl-accepting chemotaxis protein (terminator conf=100, tail_score=-4.20106) >RpoE alternative sigma factor [nhmmer score 10.2 E-value 8.4 Pos=-162] rpoH GZ59_44400 RNA polymerase sigma-32 factor (terminator conf=100, tail_score=-5.35224) ftsX GZ59_44410 cell division protein ftsE GZ59_44420 cell division ATP-binding protein ftsY GZ59_44430 signal recognition particle-docking protein FtsY >Fur [nhmmer score 8.7 E-value 36.0 Pos=-312] rsmD GZ59_44440 16S rRNA m(2)G966-methyltransferase - GZ59_44450 putative membrane protein >FliA alternative sigma factor [nhmmer score 8.0 E-value 50.0 Pos=-286] rsmD GZ59_44440 16S rRNA m(2)G966-methyltransferase - GZ59_44450 putative membrane protein tusA GZ59_44500 Sulfurtransferase TusA >PurR [nhmmer score 8.1 E-value 25.0 Pos=-149] - GZ59_44510 putative membrane protein dcrB GZ59_44520 putative lipoprotein (terminator conf=91, tail_score=-3.99324) >Fur [nhmmer score 8.5 E-value 43.0 Pos=-333] - GZ59_44530 hypothetical protein - GZ59_44540 putative lipoprotein >KdgR [nhmmer score 15.8 E-value 0.12 Pos=-126] kdgK GZ59_44570 2-dehydro-3-deoxygluconokinase (terminator conf=100, tail_score=-4.73094) bcsG GZ59_44610 cellulose biosynthesis protein BcsG bcsF GZ59_44620 cellulose biosynthesis protein BcsF bcsE GZ59_44630 cellulose biosynthesis protein BcsE >FNR [nhmmer score 9.0 E-value 18.0 Pos=-46] bcsR GZ59_44640 cellulose biosynthesis protein BcsR bcsQ GZ59_44650 cellulose biosynthesis protein BcsQ bcsA GZ59_44660 - bcsB GZ59_44680 Cellulose synthase BcsB bcsZ GZ59_44690 endoglucanase eamA GZ59_44800 putative amino acid metabolite efflux pump - GZ59_44810 putative exported protein >FruR [nhmmer score 8.0 E-value 27.0 Pos=-375] >CRP [nhmmer score 8.6 E-value 25.0 Pos=-322] avtA GZ59_44820 Valine-pyruvate aminotransferase >CRP [nhmmer score 7.9 E-value 43.0 Pos=-166] bglG GZ59_44850 beta-glucoside operon antiterminator bglF_2 GZ59_44840 PTS system, beta-glucoside specific IIabc component bglB GZ59_44830 beta-glucosidase >FNR [nhmmer score 6.6 E-value 120.0 Pos=-498] >Mlc [nhmmer score 10.9 E-value 6.2 Pos=-371] >Rob [nhmmer score 13.1 E-value 0.85 Pos=-212] >CpxR [nhmmer score 7.1 E-value 130.0 Pos=-191] maeN GZ59_44910 Na(+)-malate symporter (terminator conf=100, tail_score=-3.67597) >RpoH heat shock alternative sigma factor [nhmmer score 17.7 E-value 0.016 Pos=-145] ibpA GZ59_44990 heat shock protein A ibpB GZ59_44980 heat shock protein B (terminator conf=100, tail_score=-4.66537) - GZ59_44970 putative membrane protein (terminator conf=100, tail_score=-6.20267) celG GZ59_45030 Beta-glucosidase celF GZ59_45040 PTS system cellobiose specific EIIC component celE GZ59_45050 phosphotransferase system cellobiose-specific IIB subunit >AscG [nhmmer score 12.7 E-value 0.64 Pos=-303] ssuA GZ59_45070 putative aliphatic sulfonates binding protein ssuD GZ59_45080 alkanesulfonate monooxygenase ssuC GZ59_45090 putative aliphatic sulfonates transport permease protein ssuB GZ59_45100 putative aliphatic sulfonates transport ATP-binding protein - GZ59_45110 putative exported protein (terminator conf=100, tail_score=-5.68039) >Mlc [nhmmer score 11.4 E-value 4.4 Pos=-236] dgoT GZ59_45120 putative D-galactonate transporter (terminator conf=100, tail_score=-5.35354) >FNR [nhmmer score 6.5 E-value 130.0 Pos=-321] >SlyA [nhmmer score 8.5 E-value 36.0 Pos=-323] >Fur [nhmmer score 9.3 E-value 24.0 Pos=-335] - GZ59_45310 hypothetical protein - GZ59_45300 putative lipoprotein - GZ59_45290 putative transposase (terminator conf=83, tail_score=-4.78149) bglA GZ59_45320 6-phospho-beta-glucosidase bglI GZ59_45330 pts system, cellobiose-specific IIA component bglF GZ59_45340 PTS system, IIC component bglE GZ59_45350 pts system, IIB component >AscG [nhmmer score 13.3 E-value 0.4 Pos=-163] >CpxR [nhmmer score 8.3 E-value 49.0 Pos=-139] >CRP [nhmmer score 7.5 E-value 57.0 Pos=-133] - GZ59_45360 LacI-family transcriptional regulator - GZ59_45370 MFS efflux transporter >Rob [nhmmer score 11.5 E-value 3.0 Pos=-171] - GZ59_45480 putative type II restriction endonuclease (terminator conf=87, tail_score=-4.58283) (terminator conf=100, tail_score=-4.04188) qorB GZ59_45490 Quinone oxidoreductase 2, NAD(P)H dependent >QorR [nhmmer score 17.9 E-value 0.022 Pos=-39] qorR GZ59_45500 Redox-sensing transcriptional regulator QorR, HxlR family >NsrR [nhmmer score 9.5 E-value 11.0 Pos=-95] smvA GZ59_45580 putative methyl viologen resistance protein (terminator conf=83, tail_score=-3.32769) (terminator conf=100, tail_score=-5.27923) - GZ59_45590 putative lipoprotein - GZ59_45600 putative lipoprotein - GZ59_45610 putative lipoprotein >FruR [nhmmer score 12.0 E-value 1.1 Pos=-144] aegA GZ59_45620 anaerobically expressed oxidoreductase - GZ59_45630 electron transport protein - GZ59_45640 putative membrane protein >PhoB [nhmmer score 11.1 E-value 3.5 Pos=-107], [nhmmer score 16.1 E-value 0.073 Pos=-140] pstS GZ59_45770 phosphate-binding periplasmic protein (terminator conf=83, tail_score=-3.11619) pstC_2 GZ59_45760 phosphate transport system permease protein PstC pstA_2 GZ59_45750 phosphate transport system permease protein PstA pstB_2 GZ59_45740 phosphate transport ATP-binding protein phoU GZ59_45730 phosphate transport system protein (terminator conf=100, tail_score=-4.86033) >RpoN alternative sigma factor [nhmmer score 11.3 E-value 2.5 Pos=-59] nac_2 GZ59_45830 nitrogen assimilation regulatory protein - GZ59_45820 hypothetical protein - GZ59_45810 putative short-chain dehydrogenase - GZ59_45800 putative amino acid ABC transporter, permease protein - GZ59_45790 putative amino acid ABC transporter, permease protein - GZ59_45780 amino acid ABC transporter, ATP-binding protein (terminator conf=88, tail_score=-3.54543) >CRP [nhmmer score 6.4 E-value 140.0 Pos=-155] - GZ59_46060 putative lipoprotein (terminator conf=77, tail_score=-5.28414) - GZ59_46050 hypothetical protein - GZ59_46040 putative acyltransferase - GZ59_46030 putative acyl carrier protein - GZ59_46020 putative acyl carrier protein - GZ59_46010 putative membrane protein - GZ59_46000 putative AMP-binding enzyme - GZ59_45990 hypothetical protein - GZ59_45980 putative glycosyl transferase - GZ59_45970 putative thioesterase - GZ59_45960 putative exported protein - GZ59_45950 putative membrane protein - GZ59_45940 putative lipoprotein - GZ59_45930 putative beta-ketoacyl synthase - GZ59_45920 putative beta-hydroxydecanoyl-ACP dehydrase - GZ59_45910 3-oxoacyl-[acyl-carrier protein] reductase - GZ59_45900 putative beta-ketoacyl-ACP synthase (terminator conf=100, tail_score=-5.51046) (terminator conf=79, tail_score=-4.73613) glmS GZ59_46070 L-glutamine:D-fructose-6-phosphate aminotransferase glmU GZ59_46080 bifunctional GlmU protein >KdgR [nhmmer score 10.9 E-value 5.0 Pos=-131], [nhmmer score 17.3 E-value 0.039 Pos=-67] pelX GZ59_46090 exopolygalacturonate lyase >NarP [nhmmer score 6.7 E-value 140.0 Pos=-35] >CRP [nhmmer score 9.0 E-value 17.0 Pos=-256] atpI GZ59_46180 ATP synthase protein I atpB GZ59_46170 ATP synthase A chain atpE GZ59_46160 ATP synthase C chain atpF GZ59_46150 ATP synthase B chain atpH GZ59_46140 ATP synthase delta chain atpA GZ59_46130 ATP synthase alpha chain (terminator conf=100, tail_score=-3.53012) atpG GZ59_46120 ATP synthase gamma chain atpD GZ59_46110 ATP synthase beta chain atpC GZ59_46100 F1 sector of membrane-bound ATP synthase subunit epsilon (terminator conf=100, tail_score=-4.81249) ================================================== Total operons: 592 Total genes: 1853