#gene identifier	A_raw(3473370)	A_norm(TPM)	B_raw(3498355)	B_norm(TPM)	D_raw(3327493)	D_norm(TPM)	Description	GO Component	GO Function	GO Process	blast nr
gnl|UG|Ssc#S58311111	0	0	0	0	0	0	"PREDICTED: Sus scrofa kanadaptin-like (LOC100521846), mRNA /cds=p(1,2445) /gb=XM_003125292 /gi=311252929 /ug=Ssc.41279 /len=3134"	GO:0043231//intracellular membrane-bounded organelle	GO:0003723//RNA binding	-	gi|311252930|ref|XP_003125340.1|/0/PREDICTED: LOW QUALITY PROTEIN: kanadaptin-like [Sus scrofa]
gnl|UG|Ssc#S35173358	29	8.35	101	28.87	43	12.92	"Sus scrofa mRNA, clone:AMP010078C12, expressed in alveolar macrophage /gb=AK230996 /gi=115546477 /ug=Ssc.40043 /len=2139"	GO:0043234//protein complex;GO:0000139//Golgi membrane;GO:0016023//cytoplasmic membrane-bounded vesicle	GO:0019905//syntaxin binding	GO:0006887//exocytosis;GO:0042221//response to chemical stimulus;GO:0032386//regulation of intracellular transport;GO:0048193//Golgi vesicle transport	gi|301786006|ref|XP_002928418.1|/0/PREDICTED: sec1 family domain-containing protein 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46879214	12	3.45	0	0	14	4.21	"PREDICTED: Sus scrofa RAB3A interacting protein (rabin3) (RAB3IP), mRNA /cds=p(280,1698) /gb=XM_001926650 /gi=311255914 /ug=Ssc.54783 /len=1973"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle	GO:0030695//GTPase regulator activity;GO:0019899//enzyme binding	GO:0006892//post-Golgi vesicle-mediated transport;GO:0019222//regulation of metabolic process;GO:0010927;GO:0034613//cellular protein localization	gi|311255915|ref|XP_001926685.2|/0/PREDICTED: rab-3A-interacting protein-like [Sus scrofa]
gnl|UG|Ssc#S58307958	3	0.86	6	1.72	4	1.2	"PREDICTED: Sus scrofa cysteine-rich secretory protein 3 (CRISP3), mRNA /cds=p(61,798) /gb=XM_003128432 /gi=311260573 /ug=Ssc.49769 /len=2641"	GO:0044421//extracellular region part;GO:0030141//stored secretory granule	-	GO:0007155//cell adhesion;GO:0048232//male gamete generation	gi|311260574|ref|XP_003128480.1|/1.51654e-127/PREDICTED: cysteine-rich secretory protein 3 [Sus scrofa]
gnl|UG|Ssc#S58305643	89	25.62	60	17.15	64	19.23	"PREDICTED: Sus scrofa abl-interactor 1 (ABI1), mRNA /cds=p(1,1335) /gb=XM_003130758 /gi=311265746 /ug=Ssc.40385 /len=3643"	GO:0043231//intracellular membrane-bounded organelle;GO:0044459//plasma membrane part;GO:0043232;GO:0031252//cell leading edge;GO:0005624//membrane fraction;GO:0042995//cell projection;GO:0044444//cytoplasmic part;GO:0030427//site of polarized growth	GO:0005515//protein binding;GO:0030295//protein kinase activator activity	GO:0006468//protein phosphorylation;GO:0007015//actin filament organization;GO:0007167//enzyme linked receptor protein signaling pathway;GO:0008283//cell proliferation;GO:0009952//anterior/posterior pattern formation	gi|311265747|ref|XP_003130806.1|/0/PREDICTED: abl interactor 1-like [Sus scrofa]
gnl|UG|Ssc#S58304666	484	139.35	327	93.47	172	51.69	"PREDICTED: Sus scrofa zinc finger protein 207-like, transcript variant 2 (LOC100521516), mRNA /cds=p(325,1647) /gb=XM_003131731 /gi=311267874 /ug=Ssc.8664 /len=3311"	GO:0005634//nucleus	GO:0005488//binding	-	gi|62088010|dbj|BAD92452.1|/1.89078e-91/zinc finger protein 207 variant [Homo sapiens]
gnl|UG|Ssc#S35167457	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:AMP010013E09, expressed in alveolar macrophage /gb=AK230591 /gi=115552282 /ug=Ssc.40959 /len=4163"	GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0005488//binding;GO:0004857//enzyme inhibitor activity	GO:0019222//regulation of metabolic process;GO:0006595//polyamine metabolic process;GO:0006520//cellular amino acid metabolic process	gi|190360585|ref|NP_001121960.1|/0/antizyme inhibitor 1 [Sus scrofa]
gnl|UG|Ssc#S46877613	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa myosin light chain kinase (MYLK), mRNA /cds=p(17,784) /gb=XM_001929078 /gi=194041069 /ug=Ssc.23247 /len=2602"	GO:0044444//cytoplasmic part	GO:0005515//protein binding	GO:0003012//muscle system process;GO:0060415	"gi|301774392|ref|XP_002922616.1|/2.61787e-140/PREDICTED: myosin light chain kinase, smooth muscle-like isoform 2 [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S18337393	16	4.61	6	1.72	5	1.5	"BP464640 full-length enriched swine cDNA library, adult uterus Sus scrofa cDNA clone UTR010080G10 5', mRNA sequence /clone=UTR010080G10 /clone_end=5' /gb=BP464640 /gi=40484573 /ug=Ssc.57037 /len=757"	-	-	-	gi|301768411|ref|XP_002919630.1|/2.69635e-11/PREDICTED: protein SON-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S17527402	24	6.91	25	7.15	54	16.23	"BX676360 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0031.b.03 3prim, mRNA sequence /clone=scac0031.b.03 /clone_end=3' /gb=BX676360 /gi=90238243 /ug=Ssc.14201 /len=931"	-	-	-	-
gnl|UG|Ssc#S55326738	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10017D06, expressed in ovary /gb=AK347913 /gi=288778088 /ug=Ssc.24346 /len=1589"	GO:0031224//intrinsic to membrane	-	GO:0008152//metabolic process	gi|311252231|ref|XP_003124990.1|/8.16027e-144/PREDICTED: transmembrane protein 150A-like [Sus scrofa]
gnl|UG|Ssc#S58301677	2	0.58	7	2	0	0	"PREDICTED: Sus scrofa zinc finger protein 800 (ZNF800), mRNA /cds=p(1,1881) /gb=XM_003134721 /gi=311275492 /ug=Ssc.24123 /len=2604"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311275493|ref|XP_003134769.1|/0/PREDICTED: zinc finger protein 800-like [Sus scrofa]
gnl|UG|Ssc#S58305095	38	10.94	4	1.14	18	5.41	"PREDICTED: Sus scrofa tousled-like kinase 2 (TLK2), mRNA /cds=p(141,2393) /gb=XM_003131300 /gi=311266991 /ug=Ssc.21128 /len=3621"	GO:0043231//intracellular membrane-bounded organelle	GO:0004672//protein kinase activity;GO:0032559	GO:0006796//phosphate metabolic process;GO:0033554//cellular response to stress;GO:0006333//chromatin assembly or disassembly;GO:0048232//male gamete generation;GO:0007165//signal transduction;GO:0006464//protein modification process	gi|73965351|ref|XP_548038.2|/0/PREDICTED: similar to tousled-like kinase 2 [Canis familiaris]
gnl|UG|Ssc#S35168663	23	6.62	6	1.72	17	5.11	"Sus scrofa mRNA, clone:THY010043A09, expressed in thymus /gb=AK238888 /gi=115551027 /ug=Ssc.42912 /len=1398"	GO:0043229//intracellular organelle	-	-	gi|301785459|ref|XP_002928142.1|/6.90089e-136/PREDICTED: heterochromatin protein 1-binding protein 3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58309953	37	10.65	28	8	62	18.63	"PREDICTED: Sus scrofa pleckstrin homology domain containing, family A member 5 (PLEKHA5), mRNA /cds=p(1,3525) /gb=XM_003126447 /gi=311256080 /ug=Ssc.38373 /len=4420"	-	GO:0035091//phosphatidylinositol binding	-	gi|311256081|ref|XP_003126495.1|/0/PREDICTED: pleckstrin homology domain-containing family A member 5-like [Sus scrofa]
gnl|UG|Ssc#S35164943	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10182G01, expressed in liver /gb=AK233595 /gi=115554783 /ug=Ssc.19382 /len=2250"	GO:0044429//mitochondrial part;GO:0000267//cell fraction	GO:0043169//cation binding;GO:0004611//phosphoenolpyruvate carboxykinase activity;GO:0032561	GO:0043648//dicarboxylic acid metabolic process;GO:0031960//response to corticosteroid stimulus;GO:0006006//glucose metabolic process	gi|238863892|gb|ACR66222.1|/0/phosphoenolpyruvate carboxykinase 2 [Sus scrofa]
gnl|UG|Ssc#S58313535	3	0.86	2	0.57	0	0	"PREDICTED: Sus scrofa tripartite motif-containing protein 44-like (LOC100524974), mRNA /cds=p(383,1420) /gb=XM_003122865 /gi=311247978 /ug=Ssc.24607 /len=3293"	GO:0044464//cell part	GO:0046914//transition metal ion binding	-	gi|311247979|ref|XP_003122913.1|/4.37412e-87/PREDICTED: tripartite motif-containing protein 44-like [Sus scrofa]
gnl|UG|Ssc#S18384127	16	4.61	10	2.86	5	1.5	"935200 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK464236 /gi=40835517 /ug=Ssc.43493 /len=788"	-	-	-	gi|98989852|gb|ABF60032.1|/1.20927e-09/transposase [Lipotes vexillifer]
gnl|UG|Ssc#S38479765	104	29.94	176	50.31	95	28.55	"EST-AO198F04 Alveolar macrophage from PRRSV-infected pig Sus scrofa cDNA clone AO198F04, mRNA sequence /clone=AO198F04 /gb=ES444917 /gi=146286507 /ug=Ssc.75323 /len=790"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0015036//disulfide oxidoreductase activity;GO:0005488//binding	"GO:0051099//positive regulation of binding;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0055086//nucleobase, nucleoside and nucleotide metabolic process;GO:0018904;GO:0006091//generation of precursor metabolites and energy;GO:0023052//signaling;GO:0007154//cell communication;GO:0019725//cellular homeostasis;GO:0000060//protein import into nucleus, translocation;GO:0009628//response to abiotic stimulus;GO:0046823"	gi|114626146|ref|XP_001142154.1|/6.59224e-56/PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF) (Surface-associated sulphydryl protein) (SASP) [Pan troglodytes]
gnl|UG|Ssc#S55236148	0	0	0	0	0	0	"FS647888 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10099C07 5', mRNA sequence /clone=BFLT10099C07 /clone_end=5' /gb=FS647888 /gi=288230800 /ug=Ssc.93145 /len=764"	GO:0016021//integral to membrane	GO:0004725//protein tyrosine phosphatase activity;GO:0005488//binding;GO:0004871//signal transducer activity	GO:0006464//protein modification process	"gi|62088246|dbj|BAD92570.1|/3.13476e-99/protein tyrosine phosphatase, receptor type, sigma isoform 3 precursor variant [Homo sapiens]"
gnl|UG|Ssc#S55321758	3	0.86	0	0	4	1.2	"Sus scrofa mRNA, clone:ITT010015G10, expressed in small intestine /gb=AK344927 /gi=288783114 /ug=Ssc.44152 /len=2349"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0042623//ATPase activity, coupled;GO:0008135//translation factor activity, nucleic acid binding;GO:0032559"	"GO:0006412//translation;GO:0009887//organ morphogenesis;GO:0009207;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|74219920|dbj|BAE40541.1|/2.39321e-161/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S58314665	426	122.65	109	31.16	617	185.42	"PREDICTED: Sus scrofa ribosomal protein L4 (LOC100038029), mRNA /cds=p(1,1539) /gb=XM_003121741 /gi=311245329 /ug=Ssc.14003 /len=1671"	GO:0031981//nuclear lumen;GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|311245330|ref|XP_003121789.1|/0/PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L4 [Sus scrofa]
gnl|UG|Ssc#S20958937	6	1.73	0	0	4	1.2	"AJ680695 CSEQRAN04 Sus scrofa cDNA clone C0001788_P02, mRNA sequence /clone=C0001788_P02 /gb=AJ680695 /gi=49413282 /ug=Ssc.86021 /len=475"	GO:0043231//intracellular membrane-bounded organelle	GO:0042578//phosphoric ester hydrolase activity;GO:0043169//cation binding	GO:0031347//regulation of defense response;GO:0002252	gi|149733623|ref|XP_001499548.1|/6.44338e-84/PREDICTED: similar to SAM domain and HD domain-containing protein 1 (Dendritic cell-derived IFNG-induced protein) (DCIP) (Monocyte protein 5) (MOP-5) [Equus caballus]
gnl|UG|Ssc#S58308007	9	2.59	0	0	3	0.9	"PREDICTED: Sus scrofa ubiquitin specific peptidase 49 (USP49), mRNA /cds=p(391,2439) /gb=XM_003128390 /gi=311260407 /ug=Ssc.95268 /len=2439"	-	GO:0046914//transition metal ion binding;GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0019941//modification-dependent protein catabolic process	gi|311260408|ref|XP_003128438.1|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 49-like [Sus scrofa]
gnl|UG|Ssc#S21577631	3	0.86	2	0.57	6	1.8	"UMC-pd3ov3-004-e11 Oviduct gilt D3 of estrous cycle pd3ov Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO990543 /gi=51349817 /ug=Ssc.86609 /len=334"	-	-	-	-
gnl|UG|Ssc#S58312300	5	1.44	3	0.86	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100516425 (LOC100516425), mRNA /cds=p(78,1997) /gb=XM_003124098 /gi=311250497 /ug=Ssc.73696 /len=1997"	GO:0031981//nuclear lumen	GO:0005488//binding	GO:0048731;GO:0051234//establishment of localization	gi|311250498|ref|XP_003124146.1|/1.35611e-178/PREDICTED: hypothetical protein LOC100516425 [Sus scrofa]
gnl|UG|Ssc#S35173343	12	3.45	8	2.29	11	3.31	"Sus scrofa mRNA, clone:AMP010081D07, expressed in alveolar macrophage /gb=AK231011 /gi=115546492 /ug=Ssc.3806 /len=3268"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0016197//endosome transport	gi|301755216|ref|XP_002913458.1|/0/PREDICTED: vacuolar protein sorting-associated protein 35-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35173710	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:AMP010050E02, expressed in alveolar macrophage /gb=AK230834 /gi=115546125 /ug=Ssc.14396 /len=1057"	GO:0070461//SAGA-type complex;GO:0005667//transcription factor complex;GO:0016020//membrane	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0004468//lysine N-acetyltransferase activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003702//RNA polymerase II transcription factor activity	"GO:0006352//transcription initiation, DNA-dependent;GO:0016573//histone acetylation;GO:0006354//transcription elongation, DNA-dependent"	gi|296207258|ref|XP_002750565.1|/6.15213e-104/PREDICTED: transcription initiation factor TFIID subunit 12-like [Callithrix jacchus]
gnl|UG|Ssc#S46878972	0	0	0	0	0	0	"PREDICTED: Sus scrofa ribosomal protein S6 kinase alpha-5-like (LOC100152046), mRNA /cds=p(1,1632) /gb=XM_001926231 /gi=311261447 /ug=Ssc.2132 /len=2901"	GO:0031981//nuclear lumen	GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0032559	"GO:0006351//transcription, DNA-dependent;GO:0002224//toll-like receptor signaling pathway;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006468//protein phosphorylation;GO:0006935//chemotaxis;GO:0000165//MAPKKK cascade"	gi|311261448|ref|XP_001926266.2|/0/PREDICTED: ribosomal protein S6 kinase alpha-5-like [Sus scrofa]
gnl|UG|Ssc#S58313940	70	20.15	29	8.29	34	10.22	"PREDICTED: Sus scrofa coronin-1B-like (LOC100511677), mRNA /cds=p(84,1553) /gb=XM_003122460 /gi=311247147 /ug=Ssc.19223 /len=1906"	GO:0005856//cytoskeleton	GO:0003779//actin binding	GO:0007010//cytoskeleton organization	gi|311247148|ref|XP_003122508.1|/0/PREDICTED: coronin-1B-like [Sus scrofa]
gnl|UG|Ssc#S46877516	9	2.59	7	2	4	1.2	"PREDICTED: Sus scrofa protein tyrosine phosphatase, receptor type, G (PTPRG), mRNA /cds=p(1,4176) /gb=XM_001926989 /gi=311269085 /ug=Ssc.22912 /len=4906"	GO:0016021//integral to membrane;GO:0044421//extracellular region part	GO:0004871//signal transducer activity;GO:0004725//protein tyrosine phosphatase activity;GO:0005515//protein binding	GO:0007417//central nervous system development;GO:0006470//protein dephosphorylation;GO:0007167//enzyme linked receptor protein signaling pathway;GO:0010975//regulation of neuron projection development	gi|311269086|ref|XP_001927024.2|/0/PREDICTED: receptor-type tyrosine-protein phosphatase gamma [Sus scrofa]
gnl|UG|Ssc#S58313601	71	20.44	36	10.29	40	12.02	"PREDICTED: Sus scrofa nucleoporin 160kDa (NUP160), mRNA /cds=p(1,4407) /gb=XM_003122817 /gi=311247845 /ug=Ssc.42929 /len=5134"	"GO:0005643//nuclear pore;GO:0000775//chromosome, centromeric region;GO:0044444//cytoplasmic part"	GO:0005488//binding;GO:0005215//transporter activity	GO:0044238//primary metabolic process;GO:0015758//glucose transport;GO:0006405//RNA export from nucleus;GO:0007067//mitosis	gi|311247846|ref|XP_003122865.1|/0/PREDICTED: nuclear pore complex protein Nup160-like [Sus scrofa]
gnl|UG|Ssc#S58305837	14	4.03	5	1.43	27	8.11	"PREDICTED: Sus scrofa RAC-gamma serine/threonine-protein kinase-like (LOC100513811), mRNA /cds=p(1,1464) /gb=XM_003130561 /gi=311265343 /ug=Ssc.55979 /len=1994"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0000267//cell fraction;GO:0016020//membrane	GO:0004672//protein kinase activity;GO:0019901//protein kinase binding;GO:0032559	GO:0006468//protein phosphorylation;GO:0002028//regulation of sodium ion transport;GO:0023052//signaling;GO:0032868//response to insulin stimulus	gi|311265344|ref|XP_003130609.1|/0/PREDICTED: RAC-gamma serine/threonine-protein kinase-like [Sus scrofa]
gnl|UG|Ssc#S26650970	47	13.53	93	26.58	63	18.93	"BW982033 full-length enriched swine cDNA library, adult intestine Sus scrofa cDNA clone ITT010068B08 5', mRNA sequence /clone=ITT010068B08 /clone_end=5' /gb=BW982033 /gi=74258873 /ug=Ssc.45307 /len=825"	-	-	-	-
gnl|UG|Ssc#S58311183	210	60.46	199	56.88	60	18.03	"PREDICTED: Sus scrofa serine/arginine-rich splicing factor 7-like, transcript variant 1 (LOC100518189), mRNA /cds=p(241,957) /gb=XM_003125210 /gi=311252784 /ug=Ssc.13663 /len=2433"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	gi|114577076|ref|XP_515421.2|/3.27111e-75/PREDICTED: similar to Sfrs7 protein [Pan troglodytes]
gnl|UG|Ssc#S58301681	13	3.74	6	1.72	7	2.1	"PREDICTED: Sus scrofa staphylococcal nuclease domain-containing protein 1-like (LOC100523412), partial mRNA /cds=p(204,1241) /gb=XM_003134719 /gi=311275484 /ug=Ssc.83383 /len=1241"	-	-	-	-
gnl|UG|Ssc#S58312759	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa UPF0544 protein C5orf45 homolog (LOC100518897), mRNA /cds=p(45,1049) /gb=XM_003123640 /gi=311249550 /ug=Ssc.44696 /len=1307"	-	-	-	gi|311249551|ref|XP_003123688.1|/0/PREDICTED: UPF0544 protein C5orf45 homolog [Sus scrofa]
gnl|UG|Ssc#S55324445	0	0	3	0.86	10	3.01	"Sus scrofa mRNA, clone:SMG010004G08, expressed in submaxillary gland /gb=AK349961 /gi=288780427 /ug=Ssc.32334 /len=3636"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0046914//transition metal ion binding;GO:0016715//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen"	GO:0006576//cellular biogenic amine metabolic process	"gi|194035411|ref|XP_001926966.1|/0/PREDICTED: monooxygenase, DBH-like 1 [Sus scrofa]"
gnl|UG|Ssc#S58304637	8	2.3	3	0.86	7	2.1	"PREDICTED: Sus scrofa protein unc-119 homolog A-like (LOC100512369), mRNA /cds=p(56,778) /gb=XM_003131761 /gi=311267936 /ug=Ssc.27188 /len=1384"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	-	GO:0050953//sensory perception of light stimulus;GO:0007267//cell-cell signaling;GO:0007165//signal transduction	gi|311267937|ref|XP_003131809.1|/6.42577e-110/PREDICTED: protein unc-119 homolog A-like [Sus scrofa]
gnl|UG|Ssc#S57704974	18	5.18	31	8.86	17	5.11	"Sus scrofa dicer 1, ribonuclease type III (DICER1), mRNA /cds=p(17,5764) /gb=NM_001197194 /gi=308237837 /ug=Ssc.3231 /len=5995"	-	-	-	-
gnl|UG|Ssc#S6056923	3	0.86	3	0.86	5	1.5	"MI-P-H1-abm-h-02-1-UM.s1 MI-P-H1 Sus scrofa cDNA clone MI-P-H1-abm-h-02-1-UM 3', mRNA sequence /clone=MI-P-H1-abm-h-02-1-UM /clone_end=3' /gb=BF703557 /gi=11988965 /ug=Ssc.81459 /len=670"	-	-	-	-
gnl|UG|Ssc#S35174159	0	0	0	0	0	0	"Sus scrofa mRNA, clone:AMP010044D09, expressed in alveolar macrophage /gb=AK230791 /gi=115545676 /ug=Ssc.9301 /len=1546"	-	-	-	gi|194210295|ref|XP_001916381.1|/0/PREDICTED: similar to HBxAg transactivated protein 2 [Equus caballus]
gnl|UG|Ssc#S58309191	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa pleckstrin homology-like domain family B member 2-like (LOC100520495), mRNA /cds=p(228,2177) /gb=XM_003127195 /gi=311257709 /ug=Ssc.85083 /len=2443"	-	-	-	gi|311257710|ref|XP_003127243.1|/0/PREDICTED: pleckstrin homology-like domain family B member 2-like [Sus scrofa]
gnl|UG|Ssc#S55319821	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:THY010113B11, expressed in thymus /gb=AK351944 /gi=288785063 /ug=Ssc.16047 /len=3611"	-	-	-	-
gnl|UG|Ssc#S58303940	19	5.47	27	7.72	19	5.71	"PREDICTED: Sus scrofa 5'-3' exoribonuclease 1, transcript variant 2 (XRN1), mRNA /cds=p(96,5210) /gb=XM_003132458 /gi=311269479 /ug=Ssc.46575 /len=5469"	GO:0005856//cytoskeleton;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0004527//exonuclease activity;GO:0003676//nucleic acid binding	"GO:0000291//nuclear-transcribed mRNA catabolic process, exonucleolytic;GO:0016072//rRNA metabolic process"	gi|311269480|ref|XP_003132506.1|/0/PREDICTED: 5'-3' exoribonuclease 1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S37223544	7	2.02	0	0	6	1.8	"Sus scrofa hypoxia-inducible factor 2 alpha mRNA, complete cds /cds=p(107,2722) /gb=EF375723 /gi=125634699 /ug=Ssc.52477 /len=2865"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0060089;GO:0003712//transcription cofactor activity;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0046983//protein dimerization activity;GO:0003702//RNA polymerase II transcription factor activity;GO:0003677//DNA binding;GO:0019899//enzyme binding	GO:0048771//tissue remodeling;GO:0008016//regulation of heart contraction;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006584//catecholamine metabolic process;GO:0045165//cell fate commitment;GO:0050953//sensory perception of light stimulus;GO:0023052//signaling;GO:0021700//developmental maturation;GO:0006996//organelle organization;GO:0030099//myeloid cell differentiation;GO:0030323//respiratory tube development;GO:0048875;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0034599//cellular response to oxidative stress;GO:0001701//in utero embryonic development	gi|148228022|ref|NP_001090889.1|/0/endothelial PAS domain-containing protein 1 [Sus scrofa]
gnl|UG|Ssc#S55322720	3	0.86	2	0.57	3	0.9	"Sus scrofa mRNA, clone:DCI010024A09, expressed in dendritic cells (immature) /gb=AK344363 /gi=288782152 /ug=Ssc.11090 /len=2287"	-	GO:0005543//phospholipid binding	GO:0006810//transport;GO:0044238//primary metabolic process	gi|219521974|ref|NP_001137175.1|/3.58878e-146/copine-1 [Sus scrofa]
gnl|UG|Ssc#S58310084	3	0.86	2	0.57	0	0	"PREDICTED: Sus scrofa phosphatidylinositol-5-phosphate 4-kinase type-2 gamma-like, transcript variant 1 (LOC100516802), mRNA /cds=p(281,1546) /gb=XM_003126309 /gi=311255781 /ug=Ssc.1816 /len=1583"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding;GO:0016307//phosphatidylinositol phosphate kinase activity;GO:0032559	GO:0046488//phosphatidylinositol metabolic process;GO:0046474//glycerophospholipid biosynthetic process;GO:0006796//phosphate metabolic process	gi|311255782|ref|XP_003126357.1|/0/PREDICTED: phosphatidylinositol-5-phosphate 4-kinase type-2 gamma-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58305020	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa DEAH (Asp-Glu-Ala-His) box polypeptide 8 (DHX8), mRNA /cds=p(25,3501) /gb=XM_003131379 /gi=311267142 /ug=Ssc.28567 /len=4450"	GO:0005681//spliceosomal complex	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0003724//RNA helicase activity;GO:0032559"	GO:0000377;GO:0009207	gi|311267143|ref|XP_003131427.1|/0/PREDICTED: ATP-dependent RNA helicase DHX8-like [Sus scrofa]
gnl|UG|Ssc#S19549595	143	41.17	89	25.44	160	48.08	"996136 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN165699 /gi=46180129 /ug=Ssc.85367 /len=742"	-	-	-	-
gnl|UG|Ssc#S55318504	6	1.73	2	0.57	7	2.1	"Sus scrofa mRNA, clone:UTR010098F09, expressed in uterus /gb=AK352467 /gi=288786380 /ug=Ssc.66756 /len=2685"	-	-	-	gi|301770009|ref|XP_002920423.1|/1.19343e-79/PREDICTED: uncharacterized protein C3orf32-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58308854	21	6.05	6	1.72	3	0.9	"PREDICTED: Sus scrofa arginine-glutamic acid dipeptide repeats protein-like (LOC100517475), mRNA /cds=p(2,877) /gb=XM_003127537 /gi=311258393 /ug=Ssc.57773 /len=3383"	GO:0016604//nuclear body;GO:0016585//chromatin remodeling complex	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	"GO:0016568//chromatin modification;GO:0006606//protein import into nucleus;GO:0032501//multicellular organismal process;GO:0006351//transcription, DNA-dependent"	gi|311258394|ref|XP_003127585.1|/5.62788e-130/PREDICTED: arginine-glutamic acid dipeptide repeats protein-like [Sus scrofa]
gnl|UG|Ssc#S58303495	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa t-box transcription factor TBX5-like (LOC100522280), mRNA /cds=p(11,1570) /gb=XM_003132900 /gi=311270690 /ug=Ssc.26535 /len=1570"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0035051//cardiac cell differentiation;GO:0048729//tissue morphogenesis;GO:0001837//epithelial to mesenchymal transition;GO:0045597//positive regulation of cell differentiation;GO:0035115//embryonic forelimb morphogenesis;GO:0033189//response to vitamin A;GO:0003164;GO:0008285//negative regulation of cell proliferation;GO:0035441//cell migration involved in vasculogenesis;GO:0007154//cell communication;GO:0003211//cardiac ventricle formation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0030323//respiratory tube development;GO:0012502//induction of programmed cell death;GO:0060429//epithelium development	gi|311270691|ref|XP_003132948.1|/0/PREDICTED: t-box transcription factor TBX5-like [Sus scrofa]
gnl|UG|Ssc#S58307746	3	0.86	2	0.57	0	0	"PREDICTED: Sus scrofa papilin-like (LOC100523451), mRNA /cds=p(1,3840) /gb=XM_003128653 /gi=311261312 /ug=Ssc.62831 /len=4002"	GO:0005578//proteinaceous extracellular matrix	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0004866//endopeptidase inhibitor activity	GO:0010466//negative regulation of peptidase activity	gi|311261313|ref|XP_003128701.1|/0/PREDICTED: LOW QUALITY PROTEIN: papilin-like [Sus scrofa]
gnl|UG|Ssc#S20962747	0	0	2	0.57	3	0.9	"AJ684505 CSEQRAN04 Sus scrofa cDNA clone C0001805_C23, mRNA sequence /clone=C0001805_C23 /gb=AJ684505 /gi=49417095 /ug=Ssc.86085 /len=512"	-	-	-	-
gnl|UG|Ssc#S40180331	25	7.2	23	6.57	43	12.92	"rjca23c_a23.y1 jca Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW275238 /gi=182524765 /ug=Ssc.45111 /len=611"	GO:0031501//mannosyltransferase complex;GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0005488//binding;GO:0000030//mannosyltransferase activity	GO:0010608//posttranscriptional regulation of gene expression;GO:0006497//protein lipidation;GO:0006493//protein O-linked glycosylation;GO:0018317;GO:0006487//protein N-linked glycosylation	gi|194036075|ref|XP_001929318.1|/4.36118e-47/PREDICTED: dolichol-phosphate mannosyltransferase subunit 3-like [Sus scrofa]
gnl|UG|Ssc#S55324321	3	0.86	0	0	3	0.9	"Sus scrofa mRNA, clone:ADR010086D08, expressed in adrenal gland /gb=AK343537 /gi=288780551 /ug=Ssc.33481 /len=2523"	-	-	-	gi|311270866|ref|XP_003132991.1|/0/PREDICTED: GAS2-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S20937028	5408	1556.99	12663	3619.7	6417	1928.48	"AJ648751 CSEQRAN19 Sus scrofa cDNA clone C0003265_I17, mRNA sequence /clone=C0003265_I17 /gb=AJ648751 /gi=49325596 /ug=Ssc.85495 /len=467"	GO:0031981//nuclear lumen;GO:0015935//small ribosomal subunit	GO:0005198//structural molecule activity;GO:0003824//catalytic activity;GO:0003729//mRNA binding	GO:0031016//pancreas development;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006412//translation;GO:0022618//ribonucleoprotein complex assembly;GO:0019080;GO:0030099//myeloid cell differentiation;GO:0006364//rRNA processing	gi|114554382|ref|XP_001159406.1|/3.93877e-62/PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
gnl|UG|Ssc#S29976989	34	9.79	121	34.59	29	8.72	"PDUts1117C04 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1117C04 3' similar to homologue to ref|NM_214367.1| Sus scrofa beta-catenin (CTNNB1), mRNA, mRNA sequence /clone=PDUts1117C04 /clone_end=3' /gb=CV873647 /gi=84127607 /ug=Ssc.88480 /len=284"	-	-	-	-
gnl|UG|Ssc#S35169248	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:LVR010042E07, expressed in liver /gb=AK232421 /gi=115550591 /ug=Ssc.26119 /len=2562"	GO:0044421//extracellular region part;GO:0000323//lytic vacuole	GO:0015929//hexosaminidase activity	GO:0006027//glycosaminoglycan catabolic process;GO:0008283//cell proliferation;GO:0009987//cellular process	gi|197261157|gb|ACH56985.1|/4.34928e-164/hyaluronidase 1 [Sus scrofa]
gnl|UG|Ssc#S46880698	25	7.2	19	5.43	15	4.51	"PREDICTED: Sus scrofa UPF0464 protein C15orf44 homolog (LOC100153401), mRNA /cds=p(326,1882) /gb=XM_001929160 /gi=311245312 /ug=Ssc.39938 /len=2507"	-	-	-	gi|194034645|ref|XP_001929195.1|/0/PREDICTED: UPF0464 protein C15orf44 homolog [Sus scrofa]
gnl|UG|Ssc#S58311399	33	9.5	3	0.86	26	7.81	"PREDICTED: Sus scrofa polycomb group RING finger protein 1-like (LOC100514636), mRNA /cds=p(36,815) /gb=XM_003124996 /gi=311252342 /ug=Ssc.28986 /len=893"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0010467//gene expression	gi|311252343|ref|XP_003125044.1|/3.68707e-149/PREDICTED: LOW QUALITY PROTEIN: polycomb group RING finger protein 1-like [Sus scrofa]
gnl|UG|Ssc#S23757659	0	0	6	1.72	0	0	"1114716 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN115278 /gi=59809538 /ug=Ssc.38229 /len=891"	-	-	-	-
gnl|UG|Ssc#S23759052	2	0.58	2	0.57	2	0.6	"1116259 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN116671 /gi=59810931 /ug=Ssc.85897 /len=869"	-	GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0019941//modification-dependent protein catabolic process	"gi|301783585|ref|XP_002927208.1|/1.46892e-163/PREDICTED: ubiquitin carboxyl-terminal hydrolase 34-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58313065	0	0	0	0	0	0	"PREDICTED: Sus scrofa nuclear factor I/X (CCAAT-binding transcription factor), transcript variant 1 (NFIX), mRNA /cds=p(55,1587) /gb=XM_003123333 /gi=311248928 /ug=Ssc.34918 /len=1695"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity	GO:0006259//DNA metabolic process;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|297276263|ref|XP_001110651.2|/0/PREDICTED: nuclear factor 1 X-type isoform 4 [Macaca mulatta]
gnl|UG|Ssc#S35164764	4	1.15	0	0	2	0.6	"Sus scrofa mRNA, clone:UTR010036E02, expressed in uterus /gb=AK240161 /gi=115554962 /ug=Ssc.4584 /len=2219"	GO:0031012//extracellular matrix	GO:0003824//catalytic activity	GO:0043062//extracellular structure organization;GO:0008152//metabolic process	gi|57087391|ref|XP_546875.1|/0/PREDICTED: similar to CG17712-PA [Canis familiaris]
gnl|UG|Ssc#S46880239	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa zinc fingers and homeoboxes protein 1-like (LOC100154564), mRNA /cds=p(1,2619) /gb=XM_001928633 /gi=311253414 /ug=Ssc.9470 /len=4576"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	"GO:0006355//regulation of transcription, DNA-dependent"	gi|194035614|ref|XP_001928668.1|/0/PREDICTED: zinc fingers and homeoboxes protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58305986	12	3.45	48	13.72	28	8.41	"PREDICTED: Sus scrofa transmembrane protein 206-like (LOC100524887), mRNA /cds=p(39,1091) /gb=XM_003130410 /gi=311265042 /ug=Ssc.42114 /len=1091"	GO:0031224//intrinsic to membrane	-	-	gi|311265043|ref|XP_003130458.1|/0/PREDICTED: transmembrane protein 206-like [Sus scrofa]
gnl|UG|Ssc#S19549654	0	0	0	0	0	0	"996200 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN165762 /gi=46180192 /ug=Ssc.48785 /len=852"	-	-	-	gi|311262091|ref|XP_003129009.1|/8.6241e-28/PREDICTED: SLAIN motif-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S55326612	0	0	3	0.86	5	1.5	"Sus scrofa mRNA, clone:OVRM10049F01, expressed in ovary /gb=AK348039 /gi=288778214 /ug=Ssc.23472 /len=2350"	GO:0044424//intracellular part	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0007243//intracellular protein kinase cascade;GO:0009207	gi|19072794|ref|NP_060065.2|/2.51906e-94/NF-kappa-B inhibitor-interacting Ras-like protein 2 isoform a [Homo sapiens]
gnl|UG|Ssc#S29990728	0	0	3	0.86	9	2.7	"PDUts2098A03 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2098A03 5', mRNA sequence /clone=PDUts2098A03 /clone_end=5' /gb=CX065202 /gi=84141344 /ug=Ssc.2481 /len=664"	-	-	-	-
gnl|UG|Ssc#S35172093	7	2.02	2	0.57	8	2.4	"Sus scrofa mRNA, clone:ITT010055C09, expressed in intestine /gb=AK231400 /gi=115547742 /ug=Ssc.57550 /len=2206"	GO:0005635//nuclear envelope	GO:0005048//signal sequence binding;GO:0005515//protein binding;GO:0022892	GO:0006606//protein import into nucleus;GO:0065003	gi|6680596|ref|NP_032492.1|/0/importin subunit alpha-3 [Mus musculus]
gnl|UG|Ssc#S35171791	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:TCH010031B07, expressed in trachea /gb=AK238028 /gi=115548044 /ug=Ssc.52384 /len=2201"	-	-	-	-
gnl|UG|Ssc#S34315588	18	5.18	10	2.86	0	0	"Sus scrofa nuclear factor kappa-B 1 (NFKB1) mRNA, complete cds /cds=p(1,2880) /gb=DQ834921 /gi=111182880 /ug=Ssc.17816 /len=3314"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0001071//nucleic acid binding transcription factor activity;GO:0016564//transcription repressor activity;GO:0042802//identical protein binding;GO:0043565//sequence-specific DNA binding	GO:0032769//negative regulation of monooxygenase activity;GO:0030177//positive regulation of Wnt receptor signaling pathway;GO:0010883//regulation of lipid storage;GO:0009612//response to mechanical stimulus;GO:0051091//positive regulation of transcription factor activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050851//antigen receptor-mediated signaling pathway;GO:0010742//macrophage derived foam cell differentiation;GO:0030301//cholesterol transport;GO:0042036//negative regulation of cytokine biosynthetic process;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0043066//negative regulation of apoptosis;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0033619//membrane protein proteolysis;GO:0002224//toll-like receptor signaling pathway;GO:0010894//negative regulation of steroid biosynthetic process	gi|115312276|ref|NP_001041697.1|/0/nuclear factor NF-kappa-B p105 subunit [Sus scrofa]
gnl|UG|Ssc#S35164860	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:LVRM10204A08, expressed in liver /gb=AK233678 /gi=115554866 /ug=Ssc.4765 /len=2382"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0000377;GO:0006606//protein import into nucleus	gi|301765526|ref|XP_002918204.1|/0/PREDICTED: pre-mRNA-splicing factor RBM22-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58302193	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa chondroitin sulfate N-acetylgalactosaminyltransferase 1 (CSGALNACT1), mRNA /cds=p(1,1575) /gb=XM_003134203 /gi=311274238 /ug=Ssc.92781 /len=1815"	GO:0031228//intrinsic to Golgi membrane;GO:0000267//cell fraction	GO:0043169//cation binding;GO:0008376//acetylgalactosaminyltransferase activity	GO:0043062//extracellular structure organization;GO:0006024//glycosaminoglycan biosynthetic process;GO:0050650//chondroitin sulfate proteoglycan biosynthetic process;GO:0048731;GO:0006040//amino sugar metabolic process;GO:0015012//heparan sulfate proteoglycan biosynthetic process;GO:0019585//glucuronate metabolic process;GO:0033692//cellular polysaccharide biosynthetic process	gi|311274239|ref|XP_003134251.1|/0/PREDICTED: chondroitin sulfate N-acetylgalactosaminyltransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S58301690	16	4.61	13	3.72	13	3.91	"PREDICTED: Sus scrofa calumenin, transcript variant 1 (CALU), mRNA /cds=p(96,1043) /gb=XM_003134704 /gi=311275466 /ug=Ssc.1622 /len=3355"	GO:0005788//endoplasmic reticulum lumen;GO:0048770;GO:0042598//vesicular fraction	GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0001775//cell activation;GO:0031103//axon regeneration;GO:0006887//exocytosis;GO:0007599//hemostasis;GO:0010033//response to organic substance	"gi|119604085|gb|EAW83679.1|/0/calumenin, isoform CRA_c [Homo sapiens]"
gnl|UG|Ssc#S16515573	0	0	0	0	0	0	"813178 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF179089 /gi=33290865 /ug=Ssc.47863 /len=482"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0005626//insoluble fraction	GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0060089;GO:0043169//cation binding	GO:0006917//induction of apoptosis;GO:0007266//Rho protein signal transduction;GO:0009966//regulation of signal transduction;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|297463311|ref|XP_580384.4|/1.71709e-66/PREDICTED: A-kinase anchor protein 13 [Bos taurus]
gnl|UG|Ssc#S58313878	3	0.86	0	0	4	1.2	"PREDICTED: Sus scrofa fibroblast growth factor (acidic) intracellular binding protein, transcript variant 2 (FIBP), mRNA /cds=p(97,1221) /gb=XM_003122522 /gi=311247273 /ug=Ssc.3671 /len=1274"	GO:0042598//vesicular fraction;GO:0043231//intracellular membrane-bounded organelle	GO:0019838//growth factor binding	GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|311247274|ref|XP_003122570.1|/0/PREDICTED: acidic fibroblast growth factor intracellular-binding protein-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58313958	10	2.88	2	0.57	13	3.91	"PREDICTED: Sus scrofa protein unc-93 homolog B1-like (LOC100522238), mRNA /cds=p(1,1815) /gb=XM_003122436 /gi=311247111 /ug=Ssc.26300 /len=2441"	GO:0000323//lytic vacuole;GO:0044425//membrane part;GO:0045335//phagocytic vesicle	GO:0005102//receptor binding	GO:0002478;GO:0002224//toll-like receptor signaling pathway;GO:0015031//protein transport	gi|311247112|ref|XP_003122484.1|/0/PREDICTED: LOW QUALITY PROTEIN: protein unc-93 homolog B1-like [Sus scrofa]
gnl|UG|Ssc#S58313579	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa ADP-ribosylation factor GTPase activating protein 2 (ARFGAP2), mRNA /cds=p(24,1586) /gb=XM_003122814 /gi=311247890 /ug=Ssc.54668 /len=2788"	GO:0031981//nuclear lumen;GO:0012505//endomembrane system;GO:0016020//membrane	GO:0005083//small GTPase regulator activity;GO:0046914//transition metal ion binding	GO:0006810//transport;GO:0032012//regulation of ARF protein signal transduction	gi|311247891|ref|XP_003122862.1|/0/PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like [Sus scrofa]
gnl|UG|Ssc#S50181154	31	8.93	0	0	3	0.9	"susfleck_LM_32_G06 SUSFLECK Loin Muscle Sus scrofa cDNA clone 32_G06, mRNA sequence /clone=32_G06 /gb=FD612990 /gi=221016822 /ug=Ssc.3546 /len=682"	GO:0005743//mitochondrial inner membrane	GO:0015002//heme-copper terminal oxidase activity	GO:0006818//hydrogen transport;GO:0006811//ion transport	"gi|147900197|ref|NP_001090953.1|/3.55099e-38/cytochrome c oxidase subunit 7A2, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S58303739	5	1.44	0	0	11	3.31	"PREDICTED: Sus scrofa glycogen synthase kinase 3 beta (GSK3B), mRNA /cds=p(348,1814) /gb=XM_003132656 /gi=311269959 /ug=Ssc.10921 /len=2663"	GO:0031224//intrinsic to membrane	-	-	gi|74002810|ref|XP_535749.2|/0/PREDICTED: similar to transmembrane protein 39A [Canis familiaris]
gnl|UG|Ssc#S39799905	0	0	2	0.57	0	0	"rcbe11_p24.y1 cbe Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV895183 /gi=178491551 /ug=Ssc.90297 /len=411"	-	-	-	-
gnl|UG|Ssc#S35170476	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10075E06, expressed in ovary /gb=AK235385 /gi=115549363 /ug=Ssc.31586 /len=1820"	-	-	-	-
gnl|UG|Ssc#S58310509	28	8.06	38	10.86	9	2.7	"PREDICTED: Sus scrofa hippocampus abundant transcript 1 protein-like (LOC100513729), mRNA /cds=p(1,1443) /gb=XM_003125894 /gi=311254734 /ug=Ssc.37486 /len=1720"	GO:0031224//intrinsic to membrane	GO:0008493//tetracycline transporter activity	GO:0015893//drug transport;GO:0015850//organic alcohol transport;GO:0006818//hydrogen transport;GO:0006811//ion transport	gi|311254735|ref|XP_003125942.1|/0/PREDICTED: hippocampus abundant transcript 1 protein-like [Sus scrofa]
gnl|UG|Ssc#S35168857	7	2.02	20	5.72	3	0.9	"Sus scrofa mRNA, clone:OVRM10129F11, expressed in ovary /gb=AK235964 /gi=115550889 /ug=Ssc.81260 /len=2494"	-	-	-	-
gnl|UG|Ssc#S58313969	22	6.33	19	5.43	31	9.32	"PREDICTED: Sus scrofa protein phosphatase 6, regulatory subunit 3 (PPP6R3), mRNA /cds=p(1,2748) /gb=XM_003122445 /gi=311247088 /ug=Ssc.23942 /len=2748"	GO:0043231//intracellular membrane-bounded organelle	GO:0019902//phosphatase binding	GO:0010921	gi|311247089|ref|XP_003122493.1|/0/PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Sus scrofa]
gnl|UG|Ssc#S46879460	3	0.86	4	1.14	0	0	"PREDICTED: Sus scrofa MICAL-like 1 (MICALL1), mRNA /cds=p(1,2514) /gb=XM_001924644 /gi=311255109 /ug=Ssc.90047 /len=2514"	-	GO:0005488//binding	-	gi|311255110|ref|XP_001924679.2|/0/PREDICTED: MICAL-like 1 [Sus scrofa]
gnl|UG|Ssc#S46877103	33	9.5	23	6.57	23	6.91	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 3, subunit A (LOC100156570), mRNA /cds=p(110,4240) /gb=XM_001928342 /gi=311271902 /ug=Ssc.16610 /len=5233"	-	-	-	-
gnl|UG|Ssc#S58302886	3	0.86	6	1.72	4	1.2	"PREDICTED: Sus scrofa deafness, autosomal recessive 59 (DFNB59), mRNA /cds=p(1,1059) /gb=XM_003133509 /gi=311272715 /ug=Ssc.56084 /len=1059"	GO:0044297//cell body	-	GO:0050954//sensory perception of mechanical stimulus	gi|311272716|ref|XP_003133557.1|/0/PREDICTED: pejvakin-like [Sus scrofa]
gnl|UG|Ssc#S18550188	43	12.38	15	4.29	38	11.42	"BX918839 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0003.a.01 5prim, mRNA sequence /clone=scan0003.a.01 /clone_end=5' /gb=BX918839 /gi=90230088 /ug=Ssc.20965 /len=1080"	GO:0044459//plasma membrane part;GO:0030136//clathrin-coated vesicle;GO:0031224//intrinsic to membrane	GO:0005515//protein binding	GO:0006810//transport	gi|291415740|ref|XP_002724107.1|/2.92225e-16/PREDICTED: Rab acceptor 1 [Oryctolagus cuniculus]
gnl|UG|Ssc#S58313712	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa protein PAT1 homolog 1-like (LOC100521602), mRNA /cds=p(1,1800) /gb=XM_003122722 /gi=311247622 /ug=Ssc.57109 /len=1800"	GO:0005667//transcription factor complex;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding	"GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;GO:0022618//ribonucleoprotein complex assembly"	gi|311247623|ref|XP_003122770.1|/0/PREDICTED: protein PAT1 homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S34507293	20	5.76	30	8.58	19	5.71	"DB807807 full-length enriched swine cDNA library, adult lung Sus scrofa cDNA 3', mRNA sequence /clone=LNG010107E01 /clone_end=3' /gb=DB807807 /gi=112779240 /ug=Ssc.78858 /len=814"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044427;GO:0000267//cell fraction;GO:0008287//protein serine/threonine phosphatase complex;GO:0005819//spindle;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0016791//phosphatase activity;GO:0043169//cation binding	GO:0042221//response to chemical stimulus;GO:0007155//cell adhesion;GO:0016055//Wnt receptor signaling pathway;GO:0001837//epithelial to mesenchymal transition;GO:0042503//tyrosine phosphorylation of Stat3 protein;GO:0006396//RNA processing;GO:0012502//induction of programmed cell death;GO:0045860//positive regulation of protein kinase activity;GO:0022403;GO:0046519;GO:0016049//cell growth;GO:0006260//DNA replication;GO:0000165//MAPKKK cascade;GO:0050793//regulation of developmental process	gi|311272409|ref|XP_003133430.1|/1.4724e-13/PREDICTED: serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [Sus scrofa]
gnl|UG|Ssc#S58302799	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa abl interactor 2-like (LOC100514879), mRNA /cds=p(1,1065) /gb=XM_003133597 /gi=311272919 /ug=Ssc.28967 /len=1065"	GO:0031252//cell leading edge;GO:0042995//cell projection;GO:0044444//cytoplasmic part	"GO:0030674//protein binding, bridging;GO:0003676//nucleic acid binding;GO:0019899//enzyme binding;GO:0019904//protein domain specific binding"	GO:0048731;GO:0006468//protein phosphorylation;GO:0007015//actin filament organization;GO:0048870//cell motility	gi|311272920|ref|XP_003133645.1|/5.03028e-154/PREDICTED: abl interactor 2-like [Sus scrofa]
gnl|UG|Ssc#S55323724	168	48.37	45	12.86	148	44.48	"Sus scrofa mRNA, clone:SPL010027D02, expressed in spleen /gb=AK350287 /gi=288781148 /ug=Ssc.2205 /len=1785"	GO:0005901//caveola;GO:0031224//intrinsic to membrane;GO:0005813//centrosome;GO:0048770;GO:0005626//insoluble fraction	GO:0035254//glutamate receptor binding	-	gi|190360675|ref|NP_001121955.1|/0/flotillin-1 [Sus scrofa]
gnl|UG|Ssc#S46879795	144	41.46	107	30.59	141	42.37	"PREDICTED: Sus scrofa RNA binding motif protein 15, transcript variant 2 (RBM15), mRNA /cds=p(1,2967) /gb=XM_001929379 /gi=311254625 /ug=Ssc.22374 /len=3972"	GO:0031981//nuclear lumen	GO:0005488//binding	GO:0009653//anatomical structure morphogenesis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0001568//blood vessel development;GO:0048534;GO:0048523//negative regulation of cellular process	gi|311254626|ref|XP_001929414.2|/0/PREDICTED: putative RNA-binding protein 15-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S5992640	0	0	2	0.57	0	0	"120898 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=AW787162 /gi=7843938 /ti=447571910 /ug=Ssc.60252 /len=540"	-	-	-	-
gnl|UG|Ssc#S46875921	0	0	0	0	0	0	"PREDICTED: Sus scrofa regulation of nuclear pre-mRNA domain-containing protein 1B-like (LOC100157347), mRNA /cds=p(368,1348) /gb=XM_001925707 /gi=311274848 /ug=Ssc.11514 /len=1432"	-	-	-	gi|73992404|ref|XP_542990.2|/0/PREDICTED: similar to Protein C20orf77 homolog [Canis familiaris]
gnl|UG|Ssc#S29977334	0	0	0	0	0	0	"PDUts1121E04 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1121E04 5' similar to homologue to emb|AJ251829.1| Sus scrofa MHC class I SLA genomic region, haplotype H01, clone BAC 207G8, mRNA sequence /clone=PDUts1121E04 /clone_end=5' /gb=CV873992 /gi=84127952 /ug=Ssc.36639 /len=694"	-	-	-	-
gnl|UG|Ssc#S35168737	0	0	4	1.14	4	1.2	"Sus scrofa mRNA, clone:THY010033G10, expressed in thymus /gb=AK238814 /gi=115550953 /ug=Ssc.16954 /len=2335"	-	-	-	-
gnl|UG|Ssc#S35170100	169	48.66	234	66.89	160	48.08	"Sus scrofa mRNA, clone:LNG010065D07, expressed in lung /gb=AK232018 /gi=115549739 /ug=Ssc.2247 /len=1636"	-	GO:0016312//inositol bisphosphate phosphatase activity;GO:0043169//cation binding	GO:0023052//signaling;GO:0006796//phosphate metabolic process	gi|311272795|ref|XP_003133591.1|/0/PREDICTED: inositol polyphosphate 1-phosphatase-like [Sus scrofa]
gnl|UG|Ssc#S58305054	48	13.82	7	2	52	15.63	"PREDICTED: Sus scrofa elongation factor Tu GTP binding domain containing 2, transcript variant 1 (EFTUD2), mRNA /cds=p(91,3009) /gb=XM_003131332 /gi=311267073 /ug=Ssc.15282 /len=3465"	-	-	-	-
gnl|UG|Ssc#S55326095	2	0.58	2	0.57	2	0.6	"Sus scrofa mRNA, clone:OVRM10202B07, expressed in ovary /gb=AK348556 /gi=288778731 /ug=Ssc.93888 /len=2608"	-	GO:0005488//binding	-	gi|194226965|ref|XP_001488217.2|/0/PREDICTED: similar to Uncharacterized protein C22orf9 homolog [Equus caballus]
gnl|UG|Ssc#S23696033	13	3.74	3	0.86	4	1.2	"1104555 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN107136 /gi=59782399 /ug=Ssc.13853 /len=877"	-	-	-	-
gnl|UG|Ssc#S46877882	6	1.73	4	1.14	8	2.4	"PREDICTED: Sus scrofa katanin p60 ATPase-containing subunit A-like 1-like (LOC100156612), mRNA /cds=p(1,1473) /gb=XM_001928666 /gi=311266087 /ug=Ssc.44020 /len=2074"	GO:0015630//microtubule cytoskeleton	"GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0000087//M phase of mitotic cell cycle;GO:0009207	gi|194040499|ref|XP_001928701.1|/0/PREDICTED: katanin p60 ATPase-containing subunit A-like 1-like [Sus scrofa]
gnl|UG|Ssc#S55266663	19	5.47	8	2.29	31	9.32	"FS669108 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10069A03 5', mRNA sequence /clone=HTMT10069A03 /clone_end=5' /gb=FS669108 /gi=288264960 /ug=Ssc.460 /len=814"	GO:0042579//microbody	"GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;GO:0016209//antioxidant activity;GO:0004869//cysteine-type endopeptidase inhibitor activity"	GO:0006952//defense response;GO:0000302//response to reactive oxygen species;GO:0042981//regulation of apoptosis;GO:0019725//cellular homeostasis;GO:0010466//negative regulation of peptidase activity	"gi|47523086|ref|NP_999309.1|/3.41624e-79/peroxiredoxin-5, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S46881207	3	0.86	2	0.57	2	0.6	"PREDICTED: Sus scrofa RAB GTPase activating protein 1 (RABGAP1), mRNA /cds=p(51,2525) /gb=XM_001927109 /gi=311246426 /ug=Ssc.2797 /len=4159"	GO:0005815//microtubule organizing center	GO:0008092//cytoskeletal protein binding;GO:0005099//Ras GTPase activator activity	GO:0032313//regulation of Rab GTPase activity	gi|311246427|ref|XP_001927144.2|/0/PREDICTED: rab GTPase-activating protein 1 [Sus scrofa]
gnl|UG|Ssc#S58307468	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa sister chromatid cohesion protein PDS5 homolog A-like (LOC100512479), partial mRNA /cds=p(1,759) /gb=XM_003128933 /gi=311262021 /ug=Ssc.62892 /len=759"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427	GO:0005515//protein binding	GO:0006260//DNA replication;GO:0000087//M phase of mitotic cell cycle	"gi|311262022|ref|XP_003128981.1|/1.38858e-140/PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58304074	6	1.73	13	3.72	9	2.7	"PREDICTED: Sus scrofa RING1 and YY1-binding protein-like (LOC100526249), partial mRNA /cds=p(1,529) /gb=XM_003132323 /gi=311269163 /ug=Ssc.16450 /len=1446"	-	-	-	-
gnl|UG|Ssc#S20936013	38	10.94	18	5.15	9	2.7	"AJ647736 CSEQRAN19 Sus scrofa cDNA clone C0003260_I10, mRNA sequence /clone=C0003260_I10 /gb=AJ647736 /gi=49324581 /ug=Ssc.74037 /len=503"	GO:0043231//intracellular membrane-bounded organelle	-	"GO:0006954//inflammatory response;GO:0008285//negative regulation of cell proliferation;GO:0042221//response to chemical stimulus;GO:0040007//growth;GO:0008630//DNA damage response, signal transduction resulting in induction of apoptosis"	"gi|149067879|gb|EDM17431.1|/1.27922e-33/nuclear protein 1, isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S35171411	4	1.15	5	1.43	4	1.2	"Sus scrofa mRNA, clone:OVRM10044E04, expressed in ovary /gb=AK235045 /gi=115548428 /ug=Ssc.45611 /len=1778"	GO:0031224//intrinsic to membrane	-	-	gi|73950469|ref|XP_544441.2|/0/PREDICTED: similar to transmembrane protein 39b [Canis familiaris]
gnl|UG|Ssc#S35173159	55	15.83	20	5.72	38	11.42	"Sus scrofa mRNA, clone:OVR010075A08, expressed in ovary /gb=AK234514 /gi=115546676 /ug=Ssc.24352 /len=1215"	GO:0031224//intrinsic to membrane;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311269244|ref|XP_003132406.1|/1.3254e-100/PREDICTED: protein jagunal homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S58314906	11	3.17	4	1.14	15	4.51	"PREDICTED: Sus scrofa probable ribosome biogenesis protein RLP24-like (LOC100515595), mRNA /cds=p(64,555) /gb=XM_003121498 /gi=311244700 /ug=Ssc.6718 /len=2163"	GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0005198//structural molecule activity	GO:0010467//gene expression;GO:0022613//ribonucleoprotein complex biogenesis	gi|311244701|ref|XP_003121546.1|/2.44818e-80/PREDICTED: probable ribosome biogenesis protein RLP24-like [Sus scrofa]
gnl|UG|Ssc#S58308686	27	7.77	36	10.29	3	0.9	"PREDICTED: Sus scrofa hypothetical protein LOC100524500 (LOC100524500), mRNA /cds=p(1,696) /gb=XM_003127713 /gi=311258743 /ug=Ssc.16781 /len=2189"	-	-	-	-
gnl|UG|Ssc#S19542021	5	1.44	2	0.57	0	0	"946885 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158117 /gi=46172547 /ug=Ssc.12995 /len=854"	-	-	-	-
gnl|UG|Ssc#S58303643	4	1.15	4	1.14	5	1.5	"PREDICTED: Sus scrofa GC-rich sequence DNA-binding factor 1-like (LOC100525128), mRNA /cds=p(68,2815) /gb=XM_003132753 /gi=311270184 /ug=Ssc.7449 /len=3913"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|311270185|ref|XP_003132801.1|/0/PREDICTED: LOW QUALITY PROTEIN: GC-rich sequence DNA-binding factor 1-like [Sus scrofa]
gnl|UG|Ssc#S55323526	10	2.88	5	1.43	2	0.6	"Sus scrofa mRNA, clone:AMP010091D12, expressed in alveolar macrophages /gb=AK343955 /gi=288781346 /ug=Ssc.82926 /len=2522"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0000377;GO:0065003	gi|114663425|ref|XP_511081.2|/0/PREDICTED: similar to KIAA0017 protein [Pan troglodytes]
gnl|UG|Ssc#S58309038	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa oxysterols receptor LXR-beta-like, transcript variant 1 (LOC100525290), mRNA /cds=p(305,1681) /gb=XM_003127361 /gi=311258023 /ug=Ssc.21608 /len=2071"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0004879//ligand-dependent nuclear receptor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0042974//retinoic acid receptor binding;GO:0003677//DNA binding	GO:0051004;GO:0031325//positive regulation of cellular metabolic process;GO:0010878//cholesterol storage;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0030162//regulation of proteolysis;GO:0045806//negative regulation of endocytosis;GO:0034380//high-density lipoprotein particle assembly;GO:0033299//secretion of lysosomal enzymes;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0030522//intracellular receptor mediated signaling pathway;GO:0010883//regulation of lipid storage;GO:0010874//regulation of cholesterol efflux;GO:0010866//regulation of triglyceride biosynthetic process;GO:0055092//sterol homeostasis;GO:0030157//pancreatic juice secretion;GO:0046889//positive regulation of lipid biosynthetic process	gi|311258024|ref|XP_003127409.1|/0/PREDICTED: oxysterols receptor LXR-beta-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S25791152	7	2.02	0	0	5	1.5	"Sus scrofa MYO5A mRNA for myosin Va, partial cds /cds=p(1,5556) /gb=AB209957 /gi=68445603 /ug=Ssc.56798 /len=5577"	GO:0031252//cell leading edge;GO:0030427//site of polarized growth;GO:0015629//actin cytoskeleton;GO:0042995//cell projection	GO:0008092//cytoskeletal protein binding;GO:0032559	GO:0051234//establishment of localization;GO:0030029//actin filament-based process	gi|68445604|dbj|BAE03307.1|/0/myosin Va [Sus scrofa]
gnl|UG|Ssc#S41575768	4	1.15	0	0	3	0.9	"PIC-A-1917 Sus Scrofa Adipocyte Zap Express Library After differentiation Sus scrofa cDNA clone SS-AA-6-2a-T3_G16, mRNA sequence /clone=SS-AA-6-2a-T3_G16 /gb=EH006656 /gi=161430416 /ug=Ssc.92765 /len=641"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|296483260|gb|DAA25375.1|/7.35482e-96/suppressor of hairy wing homolog 4-like [Bos taurus]
gnl|UG|Ssc#S58313649	10	2.88	5	1.43	9	2.7	"PREDICTED: Sus scrofa catenin (cadherin-associated protein), delta 1 (CTNND1), mRNA /cds=p(1,2817) /gb=XM_003122712 /gi=311247749 /ug=Ssc.9293 /len=3245"	GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0030425//dendrite;GO:0005913//cell-cell adherens junction;GO:0031252//cell leading edge;GO:0044444//cytoplasmic part;GO:0030427//site of polarized growth	GO:0019900//kinase binding;GO:0019902//phosphatase binding;GO:0050839//cell adhesion molecule binding	GO:0009913//epidermal cell differentiation;GO:0045216//cell-cell junction organization;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0007155//cell adhesion;GO:0030855//epithelial cell differentiation;GO:0007431//salivary gland development;GO:0010467//gene expression;GO:0002009//morphogenesis of an epithelium	gi|311247750|ref|XP_003122760.1|/0/PREDICTED: catenin delta-1-like [Sus scrofa]
gnl|UG|Ssc#S37959704	260	74.86	254	72.61	195	58.6	"Sus scrofa zinc finger protein 216 mRNA, complete cds /cds=p(11,652) /gb=DQ492687 /gi=112292623 /ug=Ssc.27892 /len=2346"	-	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0043009//chordate embryonic development;GO:0003008;GO:0009887//organ morphogenesis;GO:0060537//muscle tissue development;GO:0001667//ameboidal cell migration;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|297271082|ref|XP_001096191.2|/1.98826e-99/PREDICTED: hypothetical protein LOC702149 isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S50838369	2	0.58	0	0	0	0	"Sus scrofa titin-cap (telethonin) (TCAP), mRNA /cds=p(1,504) /gb=NM_001145754 /gi=224809549 /ug=Ssc.13807 /len=977"	GO:0031674//I band	GO:0008092//cytoskeletal protein binding;GO:0019904//protein domain specific binding;GO:0005198//structural molecule activity	GO:0006941//striated muscle contraction;GO:0007015//actin filament organization;GO:0007507//heart development;GO:0048747//muscle fiber development;GO:0014866//skeletal myofibril assembly;GO:0065003;GO:0009952//anterior/posterior pattern formation;GO:0060415;GO:0009612//response to mechanical stimulus	gi|224809550|ref|NP_001139226.1|/1.81916e-91/telethonin [Sus scrofa]
gnl|UG|Ssc#S23213104	4	1.15	5	1.43	4	1.2	"Sus scrofa clone Clu_41835.scr.msk.p1.Contig3, mRNA sequence /gb=AY609904 /gi=52351474 /ug=Ssc.9651 /len=2096"	GO:0005759//mitochondrial matrix	-	GO:0007005//mitochondrion organization	gi|148233930|ref|NP_001091572.1|/0/polymerase delta-interacting protein 2 [Bos taurus]
gnl|UG|Ssc#S58310792	41	11.8	52	14.86	10	3.01	"PREDICTED: Sus scrofa ribosome biogenesis regulatory protein homolog (LOC100521788), mRNA /cds=p(82,1179) /gb=XM_003125604 /gi=311253770 /ug=Ssc.24338 /len=2369"	GO:0000228//nuclear chromosome	GO:0005488//binding	GO:0000070//mitotic sister chromatid segregation;GO:0022613//ribonucleoprotein complex biogenesis	gi|311253771|ref|XP_003125652.1|/2.16788e-170/PREDICTED: ribosome biogenesis regulatory protein homolog [Sus scrofa]
gnl|UG|Ssc#S46880015	2	0.58	0	0	7	2.1	"PREDICTED: Sus scrofa ADAM metallopeptidase domain 15, transcript variant 3 (ADAM15), mRNA /cds=p(97,2697) /gb=XM_001929340 /gi=311254183 /ug=Ssc.48842 /len=2975"	GO:0031224//intrinsic to membrane;GO:0070161;GO:0042995//cell projection;GO:0030141//stored secretory granule	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0019904//protein domain specific binding	GO:0001837//epithelial to mesenchymal transition;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0019538//protein metabolic process;GO:0032963//collagen metabolic process;GO:0031589//cell-substrate adhesion	gi|194036081|ref|XP_001929375.1|/0/PREDICTED: disintegrin and metalloproteinase domain-containing protein 15 isoform 3 [Sus scrofa]
gnl|UG|Ssc#S35168407	72	20.73	64	18.29	75	22.54	"Sus scrofa mRNA, clone:LVRM10011E06, expressed in liver /gb=AK232717 /gi=115551283 /ug=Ssc.47897 /len=2282"	GO:0043234//protein complex;GO:0031410//cytoplasmic vesicle;GO:0005624//membrane fraction;GO:0016020//membrane	GO:0016790//thiolester hydrolase activity;GO:0004175//endopeptidase activity;GO:0061135;GO:0008192;GO:0032403//protein complex binding;GO:0019783//small conjugating protein-specific protease activity	GO:0010498//proteasomal protein catabolic process;GO:0007267//cell-cell signaling;GO:0019941//modification-dependent protein catabolic process;GO:0032101;GO:0010466//negative regulation of peptidase activity	gi|73961834|ref|XP_537306.2|/0/PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquitin thiolesterase 14) (Ubiquitin-specific processing protease 14) (Deubiquitinating enzyme 14) isoform 2 [Canis familiaris]
gnl|UG|Ssc#S58303382	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa ERO1-like protein beta-like (LOC100153764), mRNA /cds=p(97,1500) /gb=XM_003133014 /gi=311271132 /ug=Ssc.10859 /len=1500"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	"GO:0016667//oxidoreductase activity, acting on a sulfur group of donors;GO:0005515//protein binding;GO:0050662//coenzyme binding"	GO:0051234//establishment of localization;GO:0006457//protein folding;GO:0006091//generation of precursor metabolites and energy	gi|311271133|ref|XP_003133062.1|/0/PREDICTED: ERO1-like protein beta-like [Sus scrofa]
gnl|UG|Ssc#S35164705	79	22.74	84	24.01	73	21.94	"Sus scrofa mRNA, clone:UTR010041H03, expressed in uterus /gb=AK240220 /gi=115555021 /ug=Ssc.20733 /len=976"	-	-	-	gi|311249270|ref|XP_003123549.1|/5.86564e-82/PREDICTED: coiled-coil domain-containing protein 124-like [Sus scrofa]
gnl|UG|Ssc#S40474203	0	0	0	0	0	0	"rspc021_c10.y1 spc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW568809 /gi=183113742 /ug=Ssc.60423 /len=613"	-	-	-	-
gnl|UG|Ssc#S58311839	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa DCN1-like protein 3-like (LOC100525983), mRNA /cds=p(106,1020) /gb=XM_003124560 /gi=311251432 /ug=Ssc.52733 /len=1020"	GO:0044444//cytoplasmic part	-	GO:0007090//regulation of S phase of mitotic cell cycle;GO:0006915//apoptosis;GO:0016049//cell growth;GO:0010212//response to ionizing radiation;GO:0009411//response to UV	gi|311251433|ref|XP_003124608.1|/1.35969e-169/PREDICTED: DCN1-like protein 3-like [Sus scrofa]
gnl|UG|Ssc#S35171471	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10038B12, expressed in ovary /gb=AK234985 /gi=115548368 /ug=Ssc.52533 /len=1424"	-	-	-	gi|260909098|gb|ACX54186.1|/4.09788e-06/APOBEC3 splice variant [Sus scrofa]
gnl|UG|Ssc#S58314953	0	0	0	0	0	0	"PREDICTED: Sus scrofa transcription factor 4-like (LOC100511671), mRNA /cds=p(177,2204) /gb=XM_003121451 /gi=311244558 /ug=Ssc.40606 /len=2204"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0000982;GO:0000977;GO:0003712//transcription cofactor activity;GO:0001091;GO:0046983//protein dimerization activity;GO:0001083;GO:0010843//promoter binding;GO:0043566//structure-specific DNA binding	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006352//transcription initiation, DNA-dependent;GO:0034622;GO:0032501//multicellular organismal process"	gi|311244559|ref|XP_003121499.1|/0/PREDICTED: LOW QUALITY PROTEIN: transcription factor 4-like [Sus scrofa]
gnl|UG|Ssc#S55326916	50	14.4	51	14.58	67	20.14	"Sus scrofa mRNA, clone:OVR010084C05, expressed in ovary /gb=AK347735 /gi=288777910 /ug=Ssc.9336 /len=1637"	GO:0044432//endoplasmic reticulum part;GO:0031090//organelle membrane	"GO:0016862//intramolecular oxidoreductase activity, interconverting keto- and enol-groups;GO:0005488//binding"	GO:0006950//response to stress;GO:0044267//cellular protein metabolic process;GO:0019725//cellular homeostasis	gi|297684983|ref|XP_002820091.1|/0/PREDICTED: endoplasmic reticulum resident protein 44-like [Pongo abelii]
gnl|UG|Ssc#S46881169	0	0	0	0	0	0	"PREDICTED: Sus scrofa dynamin 1, transcript variant 1 (DNM1), mRNA /cds=p(65,2659) /gb=XM_001928100 /gi=311246540 /ug=Ssc.33754 /len=2659"	GO:0043234//protein complex;GO:0015630//microtubule cytoskeleton	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0005515//protein binding	GO:0009207;GO:0006898//receptor-mediated endocytosis	gi|194033645|ref|XP_001928135.1|/0/PREDICTED: dynamin-1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58312627	5	1.44	6	1.72	9	2.7	"PREDICTED: Sus scrofa RAS p21 protein activator (GTPase activating protein) 1 (RASA1), partial mRNA /cds=p(1,2316) /gb=XM_003123776 /gi=311249820 /ug=Ssc.18286 /len=3363"	GO:0016020//membrane;GO:0031252//cell leading edge;GO:0044444//cytoplasmic part	GO:0005083//small GTPase regulator activity;GO:0008200//ion channel inhibitor activity;GO:0008047//enzyme activator activity;GO:0019899//enzyme binding	GO:0001952//regulation of cell-matrix adhesion;GO:0007275//multicellular organismal development;GO:0008064//regulation of actin polymerization or depolymerization;GO:0009966//regulation of signal transduction;GO:0030154//cell differentiation;GO:0045767//regulation of anti-apoptosis;GO:0019219	gi|148705219|gb|EDL37166.1|/0/RAS p21 protein activator 1 [Mus musculus]
gnl|UG|Ssc#S31114462	30	8.64	54	15.44	20	6.01	"1533418 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY418300 /gi=87219603 /ug=Ssc.76399 /len=700"	-	-	-	gi|12006053|gb|AAG44732.1|AF267863_1/1.93656e-26/DC43 [Homo sapiens]
gnl|UG|Ssc#S6036581	2	0.58	0	0	0	0	"260886 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BF443410 /gi=11503502 /ti=470943144 /ug=Ssc.4997 /len=428"	-	-	-	-
gnl|UG|Ssc#S46876805	2	0.58	4	1.14	0	0	"PREDICTED: Sus scrofa trypsin domain containing 1 (TYSND1), mRNA /cds=p(112,1818) /gb=XM_001927343 /gi=311271313 /ug=Ssc.27581 /len=2732"	GO:0042579//microbody	GO:0004175//endopeptidase activity	GO:0019538//protein metabolic process	gi|194042748|ref|XP_001927378.1|/0/PREDICTED: peroxisomal leader peptide-processing protease [Sus scrofa]
gnl|UG|Ssc#S58305318	7	2.02	4	1.14	13	3.91	"PREDICTED: Sus scrofa uncharacterized protein C13orf27-like, transcript variant 1 (LOC100526069), mRNA /cds=p(166,843) /gb=XM_003131076 /gi=311266523 /ug=Ssc.13499 /len=1131"	-	GO:0003824//catalytic activity	-	"gi|291393200|ref|XP_002712994.1|/3.69228e-134/PREDICTED: mCG121453-like, partial [Oryctolagus cuniculus]"
gnl|UG|Ssc#S35171904	2	0.58	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10028H08, expressed in ovary /gb=AK234908 /gi=115547931 /ug=Ssc.83950 /len=1444"	-	-	-	-
gnl|UG|Ssc#S55326282	2	0.58	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10148E01, expressed in ovary /gb=AK348369 /gi=288778544 /ug=Ssc.9701 /len=2613"	-	-	-	gi|258676922|gb|ACV87314.1|/9.08145e-08/IL-23 [Sus scrofa]
gnl|UG|Ssc#S39983640	0	0	0	0	0	0	"rebs26c_g17.y1 ebs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW078705 /gi=181324478 /ug=Ssc.86336 /len=603"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|301783407|ref|XP_002927122.1|/2.16085e-35/PREDICTED: LOW QUALITY PROTEIN: zinc finger and BTB domain-containing protein 45-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58310992	10	2.88	3	0.86	2	0.6	"PREDICTED: Sus scrofa butyrophilin subfamily 1 member A1-like, transcript variant 1 (LOC100516671), mRNA /cds=p(720,1595) /gb=XM_003125408 /gi=311253170 /ug=Ssc.92066 /len=2408"	-	-	-	gi|311253171|ref|XP_003125456.1|/1.58096e-176/PREDICTED: butyrophilin subfamily 1 member A1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55325148	227	65.35	224	64.03	201	60.41	"Sus scrofa mRNA, clone:PTG010077F04, expressed in pituitary gland /gb=AK349460 /gi=288779724 /ug=Ssc.6817 /len=1696"	GO:0005789//endoplasmic reticulum membrane;GO:0031224//intrinsic to membrane	GO:0004576//oligosaccharyl transferase activity	GO:0019725//cellular homeostasis;GO:0006487//protein N-linked glycosylation	gi|30410790|ref|NP_839952.1|/8.22542e-166/tumor suppressor candidate 3 isoform b [Homo sapiens]
gnl|UG|Ssc#S35173019	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:SPL010076B03, expressed in spleen /gb=AK237662 /gi=115546816 /ug=Ssc.11161 /len=1997"	GO:0044459//plasma membrane part;GO:0031252//cell leading edge;GO:0005624//membrane fraction;GO:0044444//cytoplasmic part;GO:0034518	GO:0008092//cytoskeletal protein binding	GO:0048731;GO:0048588//developmental cell growth;GO:0030031//cell projection assembly	gi|291403962|ref|XP_002718324.1|/0/PREDICTED: cytoplasmic FMR1 interacting protein 1-like isoform 2 [Oryctolagus cuniculus]
gnl|UG|Ssc#S19541153	28	8.06	25	7.15	21	6.31	"945933 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN157249 /gi=46171679 /ug=Ssc.15866 /len=910"	-	-	-	-
gnl|UG|Ssc#S46876994	2	0.58	4	1.14	2	0.6	"PREDICTED: Sus scrofa WD repeat and FYVE domain containing 3 (WDFY3), mRNA /cds=p(1,9594) /gb=XM_001926738 /gi=311271500 /ug=Ssc.26111 /len=10006"	GO:0031224//intrinsic to membrane	-	-	gi|311271501|ref|XP_001926773.2|/0/PREDICTED: LOW QUALITY PROTEIN: WD repeat- and FYVE domain-containing protein 4 [Sus scrofa]
gnl|UG|Ssc#S58313250	0	0	0	0	0	0	"PREDICTED: Sus scrofa patatin-like phospholipase domain containing 6, transcript variant 1 (PNPLA6), mRNA /cds=p(1,3981) /gb=XM_003123145 /gi=311248553 /ug=Ssc.37352 /len=4206"	GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0004091//carboxylesterase activity	GO:0048646//anatomical structure formation involved in morphogenesis;GO:0006650//glycerophospholipid metabolic process	gi|311248554|ref|XP_003123193.1|/0/PREDICTED: neuropathy target esterase-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S18383637	25	7.2	48	13.72	24	7.21	"934699 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK463770 /gi=40835051 /ug=Ssc.55775 /len=647"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0032561	GO:0035556//intracellular signal transduction;GO:0009966//regulation of signal transduction	"gi|119900670|ref|XP_001251527.1|/4.31998e-51/PREDICTED: DBC2-like, partial [Bos taurus]"
gnl|UG|Ssc#S31100704	35	10.08	13	3.72	27	8.11	"1495883 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY404542 /gi=87205845 /ug=Ssc.88988 /len=311"	-	-	-	"gi|309270419|ref|XP_998567.3|/1.38966e-37/PREDICTED: myosin light polypeptide 6, partial [Mus musculus]"
gnl|UG|Ssc#S58313898	11	3.17	14	4	22	6.61	"PREDICTED: Sus scrofa protein cornichon homolog 2-like (LOC100521359), mRNA /cds=p(1,483) /gb=XM_003122502 /gi=311247233 /ug=Ssc.2293 /len=1096"	GO:0008328//ionotropic glutamate receptor complex;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0051234//establishment of localization;GO:0051641//cellular localization;GO:0007165//signal transduction;GO:0006873//cellular ion homeostasis;GO:0007270//nerve-nerve synaptic transmission	gi|6753470|ref|NP_034050.1|/2.40809e-82/protein cornichon homolog 2 [Mus musculus]
gnl|UG|Ssc#S58303043	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa TM2 domain-containing protein 2-like (LOC100522466), mRNA /cds=p(85,729) /gb=XM_003133359 /gi=311272337 /ug=Ssc.1141 /len=3780"	GO:0031224//intrinsic to membrane	-	-	gi|311272338|ref|XP_003133407.1|/1.28657e-114/PREDICTED: TM2 domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35169302	413	118.9	1507	430.77	371	111.5	"Sus scrofa mRNA, clone:LVR010031C05, expressed in liver /gb=AK232367 /gi=115550537 /ug=Ssc.17315 /len=1123"	-	-	-	-
gnl|UG|Ssc#S58307428	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa DCN1-like protein 4-like (LOC100521504), mRNA /cds=p(73,993) /gb=XM_003128969 /gi=311262104 /ug=Ssc.46880 /len=1027"	-	-	-	gi|311262105|ref|XP_003129017.1|/1.73238e-172/PREDICTED: DCN1-like protein 4-like [Sus scrofa]
gnl|UG|Ssc#S40483007	79	22.74	21	6	45	13.52	"rspc022_b12.y1 spc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW577613 /gi=183057110 /ug=Ssc.81308 /len=707"	-	-	-	-
gnl|UG|Ssc#S35167799	12	3.45	4	1.14	8	2.4	"Sus scrofa mRNA, clone:OVRM10183H08, expressed in ovary /gb=AK236347 /gi=115551940 /ug=Ssc.15447 /len=2240"	-	-	-	-
gnl|UG|Ssc#S58307472	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa kelch-like protein 5-like (LOC100511091), mRNA /cds=p(1,1362) /gb=XM_003128927 /gi=311262012 /ug=Ssc.12031 /len=1631"	GO:0043232	GO:0008092//cytoskeletal protein binding	-	gi|311262013|ref|XP_003128975.1|/0/PREDICTED: kelch-like protein 5-like [Sus scrofa]
gnl|UG|Ssc#S35166258	28	8.06	11	3.14	28	8.41	"Sus scrofa mRNA, clone:OVRM10214G08, expressed in ovary /gb=AK236683 /gi=115553480 /ug=Ssc.54082 /len=1335"	-	-	-	gi|297490465|ref|XP_002698352.1|/1.09638e-85/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S55322708	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:DCI010027E04, expressed in dendritic cells (immature) /gb=AK344375 /gi=288782164 /ug=Ssc.3518 /len=2404"	GO:0000267//cell fraction;GO:0044439	GO:0046872//metal ion binding;GO:0042802//identical protein binding;GO:0004448//isocitrate dehydrogenase activity;GO:0000166//nucleotide binding	GO:0006629//lipid metabolic process;GO:0009725//response to hormone stimulus;GO:0043648//dicarboxylic acid metabolic process;GO:0006790//sulfur compound metabolic process;GO:0044262//cellular carbohydrate metabolic process;GO:0009060//aerobic respiration;GO:0008406//gonad development;GO:0006950//response to stress	gi|75832090|ref|NP_851355.2|/0/isocitrate dehydrogenase [NADP] cytoplasmic [Bos taurus]
gnl|UG|Ssc#S55324408	2	0.58	0	0	3	0.9	"Sus scrofa mRNA, clone:SMG010022G11, expressed in submaxillary gland /gb=AK349998 /gi=288780464 /ug=Ssc.2828 /len=1970"	GO:0044421//extracellular region part;GO:0044424//intracellular part	GO:0043169//cation binding;GO:0008235//metalloexopeptidase activity	GO:0019538//protein metabolic process;GO:0009888//tissue development;GO:0044237//cellular metabolic process	gi|149721556|ref|XP_001490673.1|/0/PREDICTED: similar to plasma glutamate carboxypeptidase [Equus caballus]
gnl|UG|Ssc#S40498907	54	15.55	169	48.31	53	15.93	"rssp29_e4.y1 ssp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW593513 /gi=183095464 /ug=Ssc.57680 /len=676"	GO:0015934//large ribosomal subunit	GO:0005539//glycosaminoglycan binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0030217//T cell differentiation	gi|293358800|ref|XP_002729438.1|/2.20218e-40/PREDICTED: ribosomal protein L22-like [Rattus norvegicus]
gnl|UG|Ssc#S58310939	2	0.58	5	1.43	3	0.9	"PREDICTED: Sus scrofa HEAT repeat-containing protein 7A-like (LOC100516006), mRNA /cds=p(1,4317) /gb=XM_003125466 /gi=311253292 /ug=Ssc.19361 /len=4317"	-	-	-	gi|311253293|ref|XP_003125514.1|/0/PREDICTED: HEAT repeat-containing protein 7A-like [Sus scrofa]
gnl|UG|Ssc#S17500554	6	1.73	14	4	0	0	"856732 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF788019 /gi=37792580 /ug=Ssc.83406 /len=138"	-	-	-	-
gnl|UG|Ssc#S39966391	0	0	0	0	5	1.5	"rcut15_h2.y1 cut Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW061456 /gi=181291825 /ug=Ssc.89535 /len=428"	-	-	-	-
gnl|UG|Ssc#S20936565	0	0	0	0	0	0	"AJ648288 CSEQRAN19 Sus scrofa cDNA clone C0003264_D12, mRNA sequence /clone=C0003264_D12 /gb=AJ648288 /gi=49325133 /ug=Ssc.74053 /len=488"	GO:0000323//lytic vacuole;GO:0005856//cytoskeleton	GO:0004067//asparaginase activity;GO:0005515//protein binding	GO:0006530//asparagine catabolic process;GO:0006464//protein modification process	"gi|149021475|gb|EDL78938.1|/7.58052e-78/aspartylglucosaminidase, isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S46879645	8	2.3	8	2.29	11	3.31	"PREDICTED: Sus scrofa discoidin domain receptor tyrosine kinase 2 (DDR2), partial mRNA /cds=p(1,2486) /gb=XM_001928528 /gi=311253933 /ug=Ssc.71603 /len=2531"	GO:0016021//integral to membrane;GO:0044459//plasma membrane part	GO:0004871//signal transducer activity;GO:0004713//protein tyrosine kinase activity;GO:0005515//protein binding;GO:0032559	GO:0007167//enzyme linked receptor protein signaling pathway;GO:0008283//cell proliferation;GO:0006464//protein modification process	"gi|311253934|ref|XP_001928563.2|/0/PREDICTED: discoidin domain-containing receptor 2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58302411	0	0	0	0	0	0	"PREDICTED: Sus scrofa phosphodiesterase 4D (LOC100037967), mRNA /cds=p(1,1758) /gb=XM_003133984 /gi=311273778 /ug=Ssc.51775 /len=1758"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part;GO:0015630//microtubule cytoskeleton	"GO:0043169//cation binding;GO:0004114//3',5'-cyclic-nucleotide phosphodiesterase activity"	GO:0023052//signaling	"gi|311273779|ref|XP_003134032.1|/0/PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4D [Sus scrofa]"
gnl|UG|Ssc#S6068104	12	3.45	16	4.57	8	2.4	"AR068H11iLNBH11S Infected Porcine Lymph node cDNA library Sus scrofa cDNA, mRNA sequence /gb=BI305033 /gi=15416371 /ug=Ssc.81812 /len=467"	GO:0031981//nuclear lumen	GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding	"GO:0048646//anatomical structure formation involved in morphogenesis;GO:0009611//response to wounding;GO:0023052//signaling;GO:0006351//transcription, DNA-dependent"	gi|297692658|ref|XP_002823658.1|/1.57265e-47/PREDICTED: ETS domain-containing protein Elk-3-like isoform 1 [Pongo abelii]
gnl|UG|Ssc#S46879861	6	1.73	2	0.57	5	1.5	"PREDICTED: Sus scrofa prostaglandin F2 receptor negative regulator (PTGFRN), mRNA /cds=p(1,3201) /gb=XM_001927725 /gi=194036396 /ug=Ssc.57167 /len=4378"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0005488//binding;GO:0004871//signal transducer activity	GO:0006412//translation;GO:0006996//organelle organization;GO:0023052//signaling	gi|194036397|ref|XP_001927760.1|/0/PREDICTED: prostaglandin F2 receptor negative regulator [Sus scrofa]
gnl|UG|Ssc#S58307191	2	0.58	4	1.14	2	0.6	"PREDICTED: Sus scrofa heat shock 70kDa protein 4-like (HSPA4L), mRNA /cds=p(240,2762) /gb=XM_003129205 /gi=311262583 /ug=Ssc.34461 /len=2842"	GO:0043231//intracellular membrane-bounded organelle	GO:0032559	GO:0006950//response to stress;GO:0044267//cellular protein metabolic process	gi|311262584|ref|XP_003129253.1|/0/PREDICTED: heat shock 70 kDa protein 4L-like [Sus scrofa]
gnl|UG|Ssc#S58309128	15	4.32	16	4.57	12	3.61	"PREDICTED: Sus scrofa ER lumen protein retaining receptor 1-like, transcript variant 1 (LOC100520962), mRNA /cds=p(224,835) /gb=XM_003127269 /gi=311257837 /ug=Ssc.16606 /len=1600"	-	-	-	-
gnl|UG|Ssc#S35165534	2	0.58	0	0	6	1.8	"Sus scrofa mRNA, clone:UTR010018F12, expressed in uterus /gb=AK239987 /gi=115554192 /ug=Ssc.18053 /len=2287"	-	-	GO:0006887//exocytosis	gi|118151104|ref|NP_001071473.1|/0/sec1 family domain-containing protein 2 [Bos taurus]
gnl|UG|Ssc#S18549664	197	56.72	156	44.59	155	46.58	"BX918315 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0039.n.14 5prim, mRNA sequence /clone=scan0039.n.14 /clone_end=5' /gb=BX918315 /gi=90229642 /ug=Ssc.49980 /len=869"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0015002//heme-copper terminal oxidase activity	GO:0032501//multicellular organismal process;GO:0022900//electron transport chain	"gi|55926217|ref|NP_001007518.1|/7.58335e-27/cytochrome c oxidase subunit 5B, mitochondrial precursor [Sus scrofa]"
gnl|UG|Ssc#S20116768	19	5.47	16	4.57	35	10.52	"Sus scrofa mannosidase, alpha, class 1A, member 1 (MAN1A1), mRNA /cds=p(306,2285) /gb=NM_213885 /gi=47522709 /ug=Ssc.14512 /len=2731"	GO:0012505//endomembrane system;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0044444//cytoplasmic part;GO:0005626//insoluble fraction	GO:0046872//metal ion binding;GO:0015924	GO:0006487//protein N-linked glycosylation	"gi|47522710|ref|NP_999050.1|/0/mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [Sus scrofa]"
gnl|UG|Ssc#S35166287	397	114.3	194	55.45	215	64.61	"Sus scrofa mRNA, clone:OVRM10212C12, expressed in ovary /gb=AK236654 /gi=115553451 /ug=Ssc.5941 /len=3524"	GO:0031981//nuclear lumen;GO:0031674//I band;GO:0031091//platelet alpha granule;GO:0005924//cell-substrate adherens junction;GO:0005856//cytoskeleton;GO:0042995//cell projection;GO:0012505//endomembrane system	GO:0005102//receptor binding;GO:0003779//actin binding;GO:0046872//metal ion binding	GO:0007599//hemostasis;GO:0033121;GO:0006887//exocytosis;GO:0007044//cell-substrate junction assembly;GO:0006915//apoptosis;GO:0050804//regulation of synaptic transmission;GO:0001775//cell activation;GO:0048523//negative regulation of cellular process	"gi|291406475|ref|XP_002719569.1|/0/PREDICTED: actinin, alpha 1-like isoform 3 [Oryctolagus cuniculus]"
gnl|UG|Ssc#S46880159	4	1.15	4	1.14	2	0.6	"PREDICTED: Sus scrofa general transcription factor IIB (GTF2B), mRNA /cds=p(1,1092) /gb=XM_001929406 /gi=311254839 /ug=Ssc.2049 /len=1457"	GO:0031981//nuclear lumen	"GO:0046914//transition metal ion binding;GO:0008135//translation factor activity, nucleic acid binding;GO:0008134//transcription factor binding;GO:0003702//RNA polymerase II transcription factor activity"	"GO:0006412//translation;GO:0051704;GO:0006352//transcription initiation, DNA-dependent;GO:0006354//transcription elongation, DNA-dependent"	gi|311254840|ref|XP_001929441.2|/1.23364e-175/PREDICTED: transcription initiation factor IIB [Sus scrofa]
gnl|UG|Ssc#S58306248	27	7.77	43	12.29	27	8.11	"PREDICTED: Sus scrofa hypothetical protein LOC100522390 (LOC100522390), mRNA /cds=p(1,807) /gb=XM_003130153 /gi=311264500 /ug=Ssc.14022 /len=1754"	GO:0012505//endomembrane system;GO:0043234//protein complex;GO:0005795//Golgi stack;GO:0031090//organelle membrane;GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0048193//Golgi vesicle transport;GO:0006906//vesicle fusion	gi|311264501|ref|XP_003130201.1|/3.18329e-136/PREDICTED: hypothetical protein LOC100522390 [Sus scrofa]
gnl|UG|Ssc#S26721716	5	1.44	9	2.57	0	0	"AJ957800 KN404_2 Sus scrofa cDNA clone C0007753n12 5', mRNA sequence /clone=C0007753n12 /clone_end=5' /gb=AJ957800 /gi=74374616 /ug=Ssc.85459 /len=682"	-	-	-	-
gnl|UG|Ssc#S46877646	12	3.45	0	0	4	1.2	"PREDICTED: Sus scrofa transmembrane protein 41A-like (LOC100152499), mRNA /cds=p(1,960) /gb=XM_001924632 /gi=311269737 /ug=Ssc.21284 /len=2590"	GO:0031224//intrinsic to membrane	-	-	gi|311269738|ref|XP_001924667.2|/1.01434e-168/PREDICTED: transmembrane protein 41A-like [Sus scrofa]
gnl|UG|Ssc#S58306059	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa glycosaminoglycan xylosylkinase-like (LOC100523629), mRNA /cds=p(1,2028) /gb=XM_003130339 /gi=311264892 /ug=Ssc.26264 /len=3618"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0032559;GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0006796//phosphate metabolic process	gi|311264893|ref|XP_003130387.1|/0/PREDICTED: glycosaminoglycan xylosylkinase-like [Sus scrofa]
gnl|UG|Ssc#S58304251	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa anoctamin 10 (ANO10), mRNA /cds=p(148,2190) /gb=XM_003132148 /gi=311268752 /ug=Ssc.63631 /len=2190"	GO:0034702	GO:0005253//anion channel activity	GO:0015698//inorganic anion transport	gi|311268753|ref|XP_003132196.1|/0/PREDICTED: anoctamin-10-like [Sus scrofa]
gnl|UG|Ssc#S58306532	9	2.59	0	0	5	1.5	"PREDICTED: Sus scrofa neural cell adhesion molecule 1-like (LOC100515564), mRNA /cds=p(1,2547) /gb=XM_003129842 /gi=311263925 /ug=Ssc.3051 /len=5641"	-	-	-	-
gnl|UG|Ssc#S58303426	10	2.88	5	1.43	2	0.6	"PREDICTED: Sus scrofa pescadillo homolog 1, containing BRCT domain (zebrafish), transcript variant 2 (PES1), mRNA /cds=p(91,1887) /gb=XM_003132968 /gi=311270939 /ug=Ssc.4404 /len=2300"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0005694//chromosome;GO:0030684//preribosome	GO:0005488//binding	GO:0000470;GO:0007067//mitosis;GO:0006997//nucleus organization;GO:0000460//maturation of 5.8S rRNA	gi|311270940|ref|XP_003133016.1|/0/PREDICTED: pescadillo homolog isoform 2 [Sus scrofa]
gnl|UG|Ssc#S19538514	2	0.58	0	0	0	0	"941921 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN154690 /gi=46169120 /ug=Ssc.47445 /len=857"	-	GO:0005488//binding	GO:0051234//establishment of localization;GO:0010876	gi|297466099|ref|XP_002704257.1|/1.35081e-20/PREDICTED: oxysterol binding protein-like 8 [Bos taurus]
gnl|UG|Ssc#S31133833	2	0.58	0	0	0	0	"1573880 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY437671 /gi=87238974 /ug=Ssc.32591 /len=738"	GO:0031224//intrinsic to membrane;GO:0031965//nuclear membrane;GO:0030016//myofibril;GO:0031981//nuclear lumen;GO:0034992//microtubule organizing center attachment site	GO:0008092//cytoskeletal protein binding	GO:0007010//cytoskeleton organization;GO:0043578;GO:0030154//cell differentiation;GO:0051647//nucleus localization	gi|301769789|ref|XP_002920318.1|/3.07426e-81/PREDICTED: nesprin-1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55325504	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:PTG010010E09, expressed in pituitary gland /gb=AK349147 /gi=288779322 /ug=Ssc.76941 /len=1385"	GO:0005856//cytoskeleton	GO:0005488//binding	-	gi|73957485|ref|XP_853887.1|/2.87772e-118/PREDICTED: similar to CG11125-PA [Canis familiaris]
gnl|UG|Ssc#S55267030	3	0.86	0	0	0	0	"FS669475 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10074D10 5', mRNA sequence /clone=HTMT10074D10 /clone_end=5' /gb=FS669475 /gi=288267608 /ug=Ssc.12053 /len=818"	GO:0005815//microtubule organizing center;GO:0031224//intrinsic to membrane;GO:0043005//neuron projection;GO:0005930//axoneme	GO:0019887//protein kinase regulator activity	GO:0048869;GO:0048232//male gamete generation;GO:0003006//developmental process involved in reproduction;GO:0007610//behavior	gi|76621726|ref|XP_582010.2|/3.77699e-126/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S35169073	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10119F04, expressed in ovary /gb=AK235841 /gi=115550766 /ug=Ssc.51890 /len=2036"	GO:0044431//Golgi apparatus part;GO:0031410//cytoplasmic vesicle	GO:0005515//protein binding	"GO:0007030//Golgi organization;GO:0006886//intracellular protein transport;GO:0000301//retrograde transport, vesicle recycling within Golgi;GO:0023052//signaling"	gi|47522752|ref|NP_999126.1|/0/optineurin [Sus scrofa]
gnl|UG|Ssc#S58307879	0	0	0	0	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100517953 (LOC100517953), mRNA /cds=p(421,609) /gb=XM_003128517 /gi=311260879 /ug=Ssc.56397 /len=1470"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005099//Ras GTPase activator activity;GO:0046983//protein dimerization activity	GO:0032852	gi|297694942|ref|XP_002824732.1|/1.90194e-89/PREDICTED: ral GTPase-activating protein subunit alpha-1-like [Pongo abelii]
gnl|UG|Ssc#S55324162	35	10.08	2	0.57	31	9.32	"Sus scrofa mRNA, clone:SMG010049E12, expressed in submaxillary gland /gb=AK350046 /gi=288780710 /ug=Ssc.24988 /len=2255"	GO:0005746//mitochondrial respiratory chain	GO:0050662//coenzyme binding;GO:0000104//succinate dehydrogenase activity	GO:0048731;GO:0022900//electron transport chain;GO:0043648//dicarboxylic acid metabolic process;GO:0009060//aerobic respiration;GO:0051234//establishment of localization	"gi|290463427|sp|Q0QF01.2|DHSA_PIG/0/RecName: Full=Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; AltName: Full=Flavoprotein subunit of complex II; Short=Fp; Flags: Precursor"
gnl|UG|Ssc#S58311306	93	26.78	30	8.58	95	28.55	"PREDICTED: Sus scrofa pellino homolog 1 (Drosophila) (PELI1), mRNA /cds=p(1,1077) /gb=XM_003125095 /gi=311252532 /ug=Ssc.6229 /len=2946"	GO:0044444//cytoplasmic part	GO:0019787//small conjugating protein ligase activity;GO:0005488//binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0034123//positive regulation of toll-like receptor signaling pathway;GO:0030888//regulation of B cell proliferation;GO:0001816//cytokine production;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0016567//protein ubiquitination;GO:0002237//response to molecule of bacterial origin	gi|311252533|ref|XP_003125143.1|/0/PREDICTED: protein pellino homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S58311230	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa protein kinase C epsilon type-like (LOC100524932), mRNA /cds=p(1,2190) /gb=XM_003125171 /gi=311252687 /ug=Ssc.94054 /len=2902"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0030545;GO:0030234//enzyme regulator activity;GO:0060089;GO:0004697//protein kinase C activity;GO:0019900//kinase binding;GO:0032559;GO:0019904//protein domain specific binding;GO:0043178//alcohol binding;GO:0043169//cation binding	"GO:0010810;GO:0001932//regulation of protein phosphorylation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0010863//positive regulation of phospholipase C activity;GO:0045471//response to ethanol;GO:0006629//lipid metabolic process;GO:0002275;GO:0014072;GO:0001666//response to hypoxia;GO:0012502//induction of programmed cell death;GO:0009896;GO:0051047//positive regulation of secretion;GO:0007626//locomotory behavior;GO:0007599//hemostasis;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0051283;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0050796//regulation of insulin secretion;GO:0032228//regulation of synaptic transmission, GABAergic"	gi|311252688|ref|XP_003125219.1|/0/PREDICTED: protein kinase C epsilon type-like [Sus scrofa]
gnl|UG|Ssc#S26434936	0	0	6	1.72	2	0.6	"AJ939037 CSEQRAN17 Sus scrofa cDNA clone C0007318d24 3', mRNA sequence /clone=C0007318d24 /clone_end=3' /gb=AJ939037 /gi=72286002 /ug=Ssc.59478 /len=715"	-	-	-	-
gnl|UG|Ssc#S58305580	84	24.18	20	5.72	42	12.62	"PREDICTED: Sus scrofa CUGBP Elav-like family member 2-like (LOC100514313), mRNA /cds=p(1,813) /gb=XM_003130818 /gi=311265873 /ug=Ssc.31222 /len=2731"	GO:0000267//cell fraction;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0000245//spliceosome assembly;GO:0044057	gi|311265874|ref|XP_003130866.1|/1.09465e-104/PREDICTED: CUGBP Elav-like family member 2-like [Sus scrofa]
gnl|UG|Ssc#S35168434	6	1.73	28	8	3	0.9	"Sus scrofa mRNA, clone:LVRM10006F08, expressed in liver /gb=AK232689 /gi=115551256 /ug=Ssc.49678 /len=1360"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0017111//nucleoside-triphosphatase activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0000166//nucleotide binding"	"GO:0006412//translation;GO:0009887//organ morphogenesis;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|62088766|dbj|BAD92830.1|/6.27952e-56/CD68 antigen variant [Homo sapiens]
gnl|UG|Ssc#S16765775	19	5.47	14	4	14	4.21	"831236 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF363383 /gi=34163965 /ug=Ssc.83214 /len=746"	-	-	-	-
gnl|UG|Ssc#S58300834	59	16.99	39	11.15	73	21.94	"Sus scrofa breed Meishan six homeobox 1 (Six1) mRNA, complete cds /cds=p(297,1151) /gb=GU225952 /gi=312233884 /ug=Ssc.15233 /len=2201"	-	-	-	-
gnl|UG|Ssc#S38982510	214	61.61	26	7.43	84	25.24	"Sus scrofa eukaryotic translation initiation factor 4A isoform 3 (EIF4A3) mRNA, complete cds /cds=p(17,1252) /gb=DQ351286 /gi=85792295 /ug=Ssc.869 /len=1474"	GO:0005681//spliceosomal complex;GO:0016604//nuclear body	"GO:0003724//RNA helicase activity;GO:0032559;GO:0042623//ATPase activity, coupled;GO:0003729//mRNA binding"	GO:0050658//RNA transport;GO:0006412//translation;GO:0000956//nuclear-transcribed mRNA catabolic process;GO:0009207;GO:0000377;GO:0042254//ribosome biogenesis	"gi|114794629|pdb|2HYI|C/0/Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna"
gnl|UG|Ssc#S35170914	2	0.58	5	1.43	3	0.9	"Sus scrofa mRNA, clone:OVRM10069B08, expressed in ovary /gb=AK235328 /gi=115548925 /ug=Ssc.52651 /len=2156"	-	-	-	gi|311276440|ref|XP_003135207.1|/2.17365e-12/PREDICTED: e3 ubiquitin-protein ligase Praja-1-like [Sus scrofa]
gnl|UG|Ssc#S35165596	6	1.73	2	0.57	12	3.61	"Sus scrofa mRNA, clone:LVRM10125A10, expressed in liver /gb=AK233340 /gi=115554130 /ug=Ssc.47753 /len=1437"	GO:0005874//microtubule;GO:0044444//cytoplasmic part	GO:0030695//GTPase regulator activity;GO:0015631//tubulin binding	GO:0000087//M phase of mitotic cell cycle;GO:0032583//regulation of gene-specific transcription	"gi|148705348|gb|EDL37295.1|/1.15288e-109/microtubule-associated protein, RP/EB family, member 3, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S16890173	6	1.73	3	0.86	13	3.91	"Sus scrofa peripheral-type benzodiazapine receptor (BZRP) mRNA, complete cds /cds=p(69,578) /gb=AY366497 /gi=34484359 /ug=Ssc.5936 /len=829"	GO:0031966//mitochondrial membrane	GO:0030594//neurotransmitter receptor activity;GO:0032934//sterol binding	GO:0006915//apoptosis;GO:0033555//multicellular organismal response to stress;GO:0008284//positive regulation of cell proliferation;GO:0032846;GO:0031327;GO:0031103//axon regeneration;GO:0010939;GO:0006971//hypotonic response;GO:0030301//cholesterol transport;GO:0016477//cell migration;GO:0010043//response to zinc ion;GO:0035270//endocrine system development;GO:0006605//protein targeting;GO:0006779//porphyrin biosynthetic process;GO:0015698//inorganic anion transport;GO:0008285//negative regulation of cell proliferation;GO:0048545//response to steroid hormone stimulus;GO:0007267//cell-cell signaling;GO:0043270//positive regulation of ion transport;GO:0033273//response to vitamin;GO:0006694//steroid biosynthetic process;GO:0001818//negative regulation of cytokine production;GO:0007610//behavior;GO:0032496//response to lipopolysaccharide	gi|47523338|ref|NP_998918.1|/2.53973e-69/translocator protein [Sus scrofa]
gnl|UG|Ssc#S23213123	21	6.05	10	2.86	14	4.21	"Sus scrofa clone Clu_38029.scr.msk.p1.Contig1, mRNA sequence /gb=AY609885 /gi=52351455 /ug=Ssc.19540 /len=1104"	GO:0015630//microtubule cytoskeleton	GO:0046872//metal ion binding;GO:0008092//cytoskeletal protein binding	GO:0000226//microtubule cytoskeleton organization	gi|311257146|ref|XP_003126975.1|/6.53068e-96/PREDICTED: tubulin polymerization-promoting protein family member 3-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S33333600	23	6.62	4	1.14	47	14.12	"Sus scrofa zinc finger protein 265 (ZNF265) mRNA, complete cds /cds=p(68,1054) /gb=DQ499443 /gi=104295126 /ug=Ssc.13320 /len=2823"	GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0006396//RNA processing	gi|62088716|dbj|BAD92805.1|/6.50273e-76/zinc finger protein 265 isoform 1 variant [Homo sapiens]
gnl|UG|Ssc#S26730615	3	0.86	5	1.43	0	0	"AJ941523 CSEQRAN17 Sus scrofa cDNA clone C0007305m12 3', mRNA sequence /clone=C0007305m12 /clone_end=3' /gb=AJ941523 /gi=74358339 /ug=Ssc.56503 /len=731"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	-	gi|296207824|ref|XP_002750817.1|/1.77774e-41/PREDICTED: vasculin-like protein 1 [Callithrix jacchus]
gnl|UG|Ssc#S35169109	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10116F08, expressed in ovary /gb=AK235804 /gi=115550730 /ug=Ssc.37412 /len=1507"	GO:0044451//nucleoplasm part;GO:0044444//cytoplasmic part	GO:0030528//transcription regulator activity;GO:0004407//histone deacetylase activity;GO:0005515//protein binding;GO:0003712//transcription cofactor activity	"GO:0048641//regulation of skeletal muscle tissue development;GO:0045596//negative regulation of cell differentiation;GO:0001649//osteoblast differentiation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0014073;GO:0051276//chromosome organization;GO:0045892//negative regulation of transcription, DNA-dependent;GO:0048468//cell development;GO:0051789//response to protein stimulus;GO:0051153//regulation of striated muscle cell differentiation"	gi|220941643|emb|CAX15947.1|/2.58422e-67/histone deacetylase 5 [Mus musculus]
gnl|UG|Ssc#S46879389	11	3.17	6	1.72	13	3.91	"PREDICTED: Sus scrofa integrin, alpha 5 (fibronectin receptor, alpha polypeptide) (ITGA5), mRNA /cds=p(1,3513) /gb=XM_001925252 /gi=311255492 /ug=Ssc.16663 /len=4538"	-	-	-	-
gnl|UG|Ssc#S58315272	48	13.82	16	4.57	22	6.61	"PREDICTED: Sus scrofa RNA binding motif protein 16 (RBM16), mRNA /cds=p(1,3834) /gb=XM_003121133 /gi=311243755 /ug=Ssc.9476 /len=4500"	GO:0034399//nuclear periphery	GO:0070063//RNA polymerase binding	GO:0006396//RNA processing	gi|311243756|ref|XP_003121181.1|/0/PREDICTED: RNA-binding protein 16-like [Sus scrofa]
gnl|UG|Ssc#S58312331	0	0	0	0	0	0	"PREDICTED: Sus scrofa RNA-binding protein 27-like (LOC100511626), mRNA /cds=p(144,1043) /gb=XM_003124074 /gi=311250431 /ug=Ssc.88933 /len=1043"	GO:0044424//intracellular part	GO:0005488//binding	-	gi|311250432|ref|XP_003124122.1|/1.80644e-108/PREDICTED: RNA-binding protein 27-like [Sus scrofa]
gnl|UG|Ssc#S20939091	0	0	2	0.57	2	0.6	"AJ650814 CSEQRAN19 Sus scrofa cDNA clone C0003276_G18, mRNA sequence /clone=C0003276_G18 /gb=AJ650814 /gi=49327659 /ug=Ssc.85669 /len=499"	GO:0031513//nonmotile primary cilium;GO:0043232;GO:0005930//axoneme;GO:0070161	GO:0005488//binding	GO:0048856//anatomical structure development;GO:0071842;GO:0003006//developmental process involved in reproduction;GO:0048232//male gamete generation;GO:0048869	gi|197245796|gb|AAI68839.1|/4.84628e-86/Nphp1 protein [Rattus norvegicus]
gnl|UG|Ssc#S58301245	0	0	0	0	0	0	"PREDICTED: Sus scrofa discs, large homolog 3 (Drosophila) (DLG3), mRNA /cds=p(43,2550) /gb=XM_003135151 /gi=311276419 /ug=Ssc.85766 /len=2550"	GO:0030425//dendrite;GO:0044297//cell body;GO:0044430//cytoskeletal part;GO:0016020//membrane;GO:0030427//site of polarized growth	"GO:0016776//phosphotransferase activity, phosphate group as acceptor;GO:0035254//glutamate receptor binding;GO:0019904//protein domain specific binding"	GO:0007267//cell-cell signaling;GO:0006935//chemotaxis;GO:0008283//cell proliferation	gi|311276420|ref|XP_003135199.1|/0/PREDICTED: disks large homolog 3-like [Sus scrofa]
gnl|UG|Ssc#S40550484	7	2.02	3	0.86	5	1.5	"rtes03_o13.y1 tes Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW637197 /gi=183015808 /ug=Ssc.92651 /len=686"	-	-	-	-
gnl|UG|Ssc#S26388240	0	0	2	0.57	4	1.2	"BW976183 full-length enriched swine cDNA library, adult intestine Sus scrofa cDNA clone ITT010002E10 5', mRNA sequence /clone=ITT010002E10 /clone_end=5' /gb=BW976183 /gi=71958126 /ug=Ssc.81835 /len=823"	GO:0030054//cell junction;GO:0043232	GO:0005488//binding;GO:0030695//GTPase regulator activity	GO:0001525//angiogenesis;GO:0035556//intracellular signal transduction;GO:0019725//cellular homeostasis;GO:0030010//establishment of cell polarity;GO:0001935//endothelial cell proliferation;GO:0010594//regulation of endothelial cell migration;GO:0043066//negative regulation of apoptosis	"gi|149705462|ref|XP_001491579.1|/1.17932e-159/PREDICTED: KRIT1, ankyrin repeat containing isoform 1 [Equus caballus]"
gnl|UG|Ssc#S58313829	306	88.1	303	86.61	161	48.38	"PREDICTED: Sus scrofa splicing factor 1-like (LOC100523886), mRNA /cds=p(1,1953) /gb=XM_003122587 /gi=311247378 /ug=Ssc.45367 /len=2687"	GO:0031981//nuclear lumen;GO:0030529//ribonucleoprotein complex	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding	GO:0007049//cell cycle;GO:0006376//mRNA splice site selection;GO:0008285//negative regulation of cell proliferation;GO:0006694//steroid biosynthetic process;GO:0007275//multicellular organismal development;GO:0003006//developmental process involved in reproduction	gi|311247379|ref|XP_003122635.1|/0/PREDICTED: splicing factor 1-like [Sus scrofa]
gnl|UG|Ssc#S50699632	0	0	0	0	0	0	"Sus scrofa C6orf27 mRNA, complete cds /cds=p(130,2724) /gb=EU282346 /gi=162138217 /ug=Ssc.38244 /len=3225"	-	-	-	gi|162138218|gb|ABX82814.1|/0/C6orf27 [Sus scrofa]
gnl|UG|Ssc#S58312582	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa tyrosine-protein kinase Fer-like (LOC100513914), mRNA /cds=p(1,1968) /gb=XM_003123820 /gi=311249916 /ug=Ssc.93383 /len=1968"	GO:0043231//intracellular membrane-bounded organelle	GO:0008092//cytoskeletal protein binding;GO:0005083//small GTPase regulator activity;GO:0019900//kinase binding;GO:0004713//protein tyrosine kinase activity;GO:0050839//cell adhesion molecule binding;GO:0032559	GO:0006468//protein phosphorylation;GO:0042221//response to chemical stimulus;GO:0007165//signal transduction	gi|311249917|ref|XP_003123868.1|/0/PREDICTED: tyrosine-protein kinase Fer-like [Sus scrofa]
gnl|UG|Ssc#S58303202	5	1.44	7	2	10	3.01	"PREDICTED: Sus scrofa uncharacterized protein C10orf46-like (LOC100524049), mRNA /cds=p(272,1258) /gb=XM_003133195 /gi=311271897 /ug=Ssc.72070 /len=1467"	-	-	-	gi|311271898|ref|XP_003133243.1|/8.71651e-137/PREDICTED: uncharacterized protein C10orf46-like [Sus scrofa]
gnl|UG|Ssc#S58311041	7	2.02	15	4.29	11	3.31	"PREDICTED: Sus scrofa syndecan-1-like (LOC100519770), mRNA /cds=p(1,1209) /gb=XM_003125355 /gi=311253071 /ug=Ssc.11655 /len=3245"	GO:0032991//macromolecular complex;GO:0016021//integral to membrane;GO:0031254//trailing edge;GO:0005924//cell-substrate adherens junction;GO:0044424//intracellular part	GO:0005515//protein binding	GO:0006952//defense response;GO:0016055//Wnt receptor signaling pathway;GO:0044238//primary metabolic process;GO:0010038//response to metal ion;GO:0000302//response to reactive oxygen species;GO:0044260;GO:0009611//response to wounding;GO:0009887//organ morphogenesis;GO:0055001//muscle cell development;GO:0031960//response to corticosteroid stimulus;GO:0003006//developmental process involved in reproduction	gi|311253072|ref|XP_003125403.1|/0/PREDICTED: LOW QUALITY PROTEIN: syndecan-1-like [Sus scrofa]
gnl|UG|Ssc#S18354853	8	2.3	16	4.57	7	2.1	"899841 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK450318 /gi=40797532 /ug=Ssc.81069 /len=905"	-	-	-	-
gnl|UG|Ssc#S35167855	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10173F11, expressed in ovary /gb=AK236291 /gi=115551884 /ug=Ssc.52035 /len=2971"	GO:0030532//small nuclear ribonucleoprotein complex;GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	"GO:0042623//ATPase activity, coupled;GO:0000166//nucleotide binding"	GO:0000245//spliceosome assembly;GO:0009207	gi|301782221|ref|XP_002926521.1|/0/PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58311657	3	0.86	4	1.14	0	0	"PREDICTED: Sus scrofa tuberin-like (LOC100516602), mRNA /cds=p(1,5448) /gb=XM_003124731 /gi=311251811 /ug=Ssc.29112 /len=6560"	GO:0044446//intracellular organelle part;GO:0030427//site of polarized growth;GO:0043005//neuron projection;GO:0043234//protein complex;GO:0042598//vesicular fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part;GO:0044297//cell body	GO:0005099//Ras GTPase activator activity;GO:0042802//identical protein binding;GO:0046983//protein dimerization activity	GO:0014020;GO:0001952//regulation of cell-matrix adhesion;GO:0016055//Wnt receptor signaling pathway;GO:0043405//regulation of MAP kinase activity;GO:0048017//inositol lipid-mediated signaling;GO:0033673//negative regulation of kinase activity;GO:0032231//regulation of actin filament bundle assembly;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0021987//cerebral cortex development;GO:0022402//cell cycle process;GO:0006935//chemotaxis;GO:0002526//acute inflammatory response;GO:0006605//protein targeting;GO:0006897//endocytosis;GO:0008361//regulation of cell size;GO:0008285//negative regulation of cell proliferation;GO:0010741;GO:0043087//regulation of GTPase activity;GO:0051259//protein oligomerization	gi|311251812|ref|XP_003124779.1|/0/PREDICTED: tuberin-like [Sus scrofa]
gnl|UG|Ssc#S19538573	0	0	0	0	0	0	"942003 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN154765 /gi=46169195 /ug=Ssc.18332 /len=853"	-	GO:0003676//nucleic acid binding;GO:0016866//intramolecular transferase activity	GO:0009451//RNA modification	gi|74000106|ref|XP_544620.2|/3.32723e-112/PREDICTED: similar to RNA pseudouridylate synthase domain containing 2 [Canis familiaris]
gnl|UG|Ssc#S35164990	0	0	5	1.43	3	0.9	"Sus scrofa mRNA, clone:SPL010004F12, expressed in spleen /gb=AK237147 /gi=115554736 /ug=Ssc.53998 /len=2605"	GO:0031224//intrinsic to membrane	GO:0005099//Ras GTPase activator activity	GO:0051704;GO:0032313//regulation of Rab GTPase activity	gi|21389447|ref|NP_653229.1|/0/TBC1 domain family member 20 [Homo sapiens]
gnl|UG|Ssc#S55834703	37	10.65	21	6	22	6.61	"Sus scrofa SH2 domain-containing inositol-5'-phosphatase 2 (SHIP2) mRNA, complete cds /cds=p(1,3795) /gb=GU391030 /gi=295646226 /ug=Ssc.27064 /len=3795"	GO:0016020//membrane;GO:0031252//cell leading edge;GO:0030864//cortical actin cytoskeleton	GO:0046030//inositol trisphosphate phosphatase activity;GO:0035091//phosphatidylinositol binding;GO:0008092//cytoskeletal protein binding;GO:0019904//protein domain specific binding	GO:0007417//central nervous system development;GO:0010467//gene expression;GO:0043647//inositol phosphate metabolic process;GO:0009968//negative regulation of signal transduction;GO:0008283//cell proliferation;GO:0010975//regulation of neuron projection development;GO:0030036//actin cytoskeleton organization;GO:0016192//vesicle-mediated transport;GO:0043434//response to peptide hormone stimulus;GO:0006629//lipid metabolic process;GO:0019318//hexose metabolic process;GO:0043405//regulation of MAP kinase activity;GO:0006260//DNA replication	"gi|298231117|ref|NP_001177208.1|/0/phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2 [Sus scrofa]"
gnl|UG|Ssc#S20116797	3	0.86	0	0	2	0.6	"Sus scrofa protein C (inactivator of coagulation factors Va and VIIIa) (PROC), mRNA /cds=p(22,1401) /gb=NM_213918 /gi=47522651 /ug=Ssc.2763 /len=1514"	GO:0044432//endoplasmic reticulum part;GO:0044431//Golgi apparatus part;GO:0016020//membrane;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity;GO:0046872//metal ion binding	GO:0006915//apoptosis;GO:0031348//negative regulation of defense response;GO:0002376//immune system process;GO:0018200;GO:0007596//blood coagulation	gi|47522652|ref|NP_999083.1|/0/vitamin K-dependent protein C [Sus scrofa]
gnl|UG|Ssc#S55324356	14	4.03	0	0	9	2.7	"Sus scrofa mRNA, clone:ADR010080D08, expressed in adrenal gland /gb=AK343502 /gi=288780516 /ug=Ssc.84024 /len=1663"	GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0030695//GTPase regulator activity;GO:0008135//translation factor activity, nucleic acid binding"	GO:0009725//response to hormone stimulus;GO:0009746;GO:0032055//negative regulation of translation in response to stress;GO:0021782//glial cell development	gi|194207528|ref|XP_001496248.2|/0/PREDICTED: similar to Translation initiation factor eIF-2B subunit gamma (eIF-2B GDP-GTP exchange factor subunit gamma) [Equus caballus]
gnl|UG|Ssc#S46876135	6	1.73	6	1.72	7	2.1	"PREDICTED: Sus scrofa activin A receptor, type I (ACVR1), mRNA /cds=p(229,1758) /gb=XM_001927798 /gi=311272489 /ug=Ssc.9902 /len=2930"	GO:0016021//integral to membrane;GO:0043235//receptor complex	GO:0019838//growth factor binding;GO:0005024//transforming growth factor beta receptor activity;GO:0042802//identical protein binding;GO:0032559;GO:0043169//cation binding;GO:0017002//activin receptor activity;GO:0032403//protein complex binding	GO:0001525//angiogenesis;GO:0045597//positive regulation of cell differentiation;GO:0003006//developmental process involved in reproduction;GO:0001667//ameboidal cell migration;GO:0006796//phosphate metabolic process;GO:0009855//determination of bilateral symmetry;GO:0051384//response to glucocorticoid stimulus;GO:0043009//chordate embryonic development;GO:0030282//bone mineralization;GO:0022402//cell cycle process;GO:0006915//apoptosis;GO:0016202//regulation of striated muscle tissue development;GO:0006464//protein modification process;GO:0006954//inflammatory response;GO:0042692//muscle cell differentiation;GO:0032924//activin receptor signaling pathway;GO:0001704//formation of primary germ layer	gi|194044133|ref|XP_001927833.1|/0/PREDICTED: activin receptor type-1 [Sus scrofa]
gnl|UG|Ssc#S58309411	21	6.05	24	6.86	19	5.71	"PREDICTED: Sus scrofa zinc finger protein 423 (ZNF423), mRNA /cds=p(1,3768) /gb=XM_003126988 /gi=311257264 /ug=Ssc.27542 /len=4437"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0042802//identical protein binding;GO:0003677//DNA binding;GO:0046983//protein dimerization activity	"GO:0048869;GO:0032501//multicellular organismal process;GO:0006351//transcription, DNA-dependent"	gi|311257265|ref|XP_003127036.1|/0/PREDICTED: zinc finger protein 423-like [Sus scrofa]
gnl|UG|Ssc#S46875737	17	4.89	0	0	5	1.5	"PREDICTED: Sus scrofa RNA binding motif protein, X-linked, transcript variant 1 (RBMX), mRNA /cds=p(149,1321) /gb=XM_001927616 /gi=311277042 /ug=Ssc.7951 /len=3886"	GO:0005681//spliceosomal complex	GO:0003723//RNA binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0000245//spliceosome assembly"	"gi|73990618|ref|XP_853786.1|/9.68784e-170/PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA binding motif protein, X chromosome) (Glycoprotein p43) [Canis familiaris]"
gnl|UG|Ssc#S58305126	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa coiled-coil domain-containing protein 46-like (LOC100523394), partial mRNA /cds=p(322,969) /gb=XM_003131271 /gi=311266925 /ug=Ssc.77154 /len=969"	-	-	-	gi|301772688|ref|XP_002921763.1|/1.84981e-138/PREDICTED: coiled-coil domain-containing protein 46-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35173991	0	0	3	0.86	6	1.8	"Sus scrofa mRNA, clone:OVR010036G03, expressed in ovary /gb=AK234277 /gi=115545844 /ug=Ssc.11770 /len=1036"	GO:0031252//cell leading edge;GO:0005924//cell-substrate adherens junction;GO:0032432//actin filament bundle	GO:0046914//transition metal ion binding	GO:0007010//cytoskeleton organization;GO:0045597//positive regulation of cell differentiation;GO:0032501//multicellular organismal process;GO:0006897//endocytosis	gi|62988302|ref|NP_001017947.1|/7.00541e-105/PDZ and LIM domain protein 7 isoform 1 [Bos taurus]
gnl|UG|Ssc#S35174214	2	0.58	8	2.29	0	0	"Sus scrofa mRNA, clone:AMP010034A06, expressed in alveolar macrophage /gb=AK230736 /gi=115545621 /ug=Ssc.94263 /len=2894"	GO:0005789//endoplasmic reticulum membrane;GO:0031224//intrinsic to membrane	GO:0004576//oligosaccharyl transferase activity	GO:0019725//cellular homeostasis;GO:0006487//protein N-linked glycosylation	gi|291407892|ref|XP_002720270.1|/2.16337e-175/PREDICTED: magnesium transporter 1 [Oryctolagus cuniculus]
gnl|UG|Ssc#S58314534	10	2.88	2	0.57	13	3.91	"PREDICTED: Sus scrofa serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform-like (LOC100525377), mRNA /cds=p(1,1074) /gb=XM_003121868 /gi=311245664 /ug=Ssc.24006 /len=5670"	GO:0044424//intracellular part;GO:0008287//protein serine/threonine phosphatase complex;GO:0043227//membrane-bounded organelle	GO:0005488//binding;GO:0019888//protein phosphatase regulator activity	GO:0019222//regulation of metabolic process;GO:0023052//signaling	gi|311245665|ref|XP_003121916.1|/0/PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform-like [Sus scrofa]
gnl|UG|Ssc#S21381938	60	17.27	19	5.43	35	10.52	"Sus scrofa myogenic differentiation 1 (MYOD1), mRNA /cds=p(1,960) /gb=NM_001002824 /gi=50657387 /ug=Ssc.22906 /len=960"	GO:0031981//nuclear lumen;GO:0000785//chromatin;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0046983//protein dimerization activity;GO:0010843//promoter binding	"GO:0045597//positive regulation of cell differentiation;GO:0014706//striated muscle tissue development;GO:0043416//regulation of skeletal muscle tissue regeneration;GO:0048513//organ development;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0001709//cell fate determination;GO:0006464//protein modification process;GO:0042692//muscle cell differentiation;GO:0000380//alternative nuclear mRNA splicing, via spliceosome"	gi|50657388|ref|NP_001002824.1|/9.5708e-146/myoblast determination protein 1 [Sus scrofa]
gnl|UG|Ssc#S35166942	344	99.04	169	48.31	1032	310.14	"Sus scrofa mRNA, clone:THY010099G07, expressed in thymus /gb=AK239391 /gi=115552797 /ug=Ssc.8204 /len=1624"	GO:0044424//intracellular part	GO:0005488//binding	-	gi|78369284|ref|NP_001030421.1|/8.11071e-38/MORF4 family-associated protein 1 [Bos taurus]
gnl|UG|Ssc#S35165116	9229	2657.07	9805	2802.75	13623	4094.07	"Sus scrofa mRNA, clone:PBL010077F01, expressed in periphral blood mononuclear cell /gb=AK237020 /gi=115554610 /ug=Ssc.94336 /len=2502"	-	-	-	gi|297296611|ref|XP_002804859.1|/4.12562e-18/PREDICTED: hypothetical protein LOC100430740 [Macaca mulatta]
gnl|UG|Ssc#S18558154	2	0.58	0	0	0	0	"BX926805 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0015.i.07 5prim, mRNA sequence /clone=scan0015.i.07 /clone_end=5' /gb=BX926805 /gi=90231162 /ug=Ssc.54609 /len=809"	-	-	GO:0048858//cell projection morphogenesis;GO:0045597//positive regulation of cell differentiation	"gi|296490134|gb|DAA32247.1|/1.52276e-79/neuroblastoma, suppression of tumorigenicity 1 2-like [Bos taurus]"
gnl|UG|Ssc#S19540889	11	3.17	3	0.86	10	3.01	"944428 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN156985 /gi=46171415 /ug=Ssc.53964 /len=831"	-	-	-	-
gnl|UG|Ssc#S58312311	33	9.5	19	5.43	46	13.82	"PREDICTED: Sus scrofa casein kinase I isoform alpha-like, transcript variant 2 (LOC100514516), mRNA /cds=p(576,1673) /gb=XM_003124089 /gi=311250472 /ug=Ssc.41063 /len=4095"	GO:0015630//microtubule cytoskeleton;GO:0016604//nuclear body;GO:0005849//mRNA cleavage factor complex;GO:0000776//kinetochore;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0005515//protein binding;GO:0032559	GO:0006468//protein phosphorylation;GO:0032989;GO:0000087//M phase of mitotic cell cycle;GO:0048513//organ development;GO:0007166//cell surface receptor linked signaling pathway	gi|68303575|ref|NP_001020276.1|/0/casein kinase I isoform alpha isoform 1 [Homo sapiens]
gnl|UG|Ssc#S55318485	2	0.58	4	1.14	0	0	"Sus scrofa mRNA, clone:UTR010102B05, expressed in uterus /gb=AK352486 /gi=288786399 /ug=Ssc.1966 /len=2113"	GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0005793//ER-Golgi intermediate compartment;GO:0012505//endomembrane system	GO:0005515//protein binding	GO:0006906//vesicle fusion;GO:0048193//Golgi vesicle transport;GO:0016197//endosome transport;GO:0015031//protein transport	gi|149725233|ref|XP_001502886.1|/2.64489e-172/PREDICTED: similar to Syntaxin-5 [Equus caballus]
gnl|UG|Ssc#S55834719	5	1.44	0	0	3	0.9	"Sus scrofa autophagy related 9-like protein A (ATG9A) mRNA, complete cds /cds=p(1,2616) /gb=HM046512 /gi=296874491 /ug=Ssc.3677 /len=2616"	GO:0031224//intrinsic to membrane;GO:0005774//vacuolar membrane;GO:0031982//vesicle;GO:0005770//late endosome	-	GO:0006810//transport;GO:0044248//cellular catabolic process;GO:0007033//vacuole organization	gi|298231109|ref|NP_001177204.1|/0/autophagy-related protein 9A [Sus scrofa]
gnl|UG|Ssc#S31107849	93	26.78	42	12.01	30	9.02	"1516461 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY411687 /gi=87212990 /ug=Ssc.55867 /len=619"	-	-	-	-
gnl|UG|Ssc#S55323786	23	6.62	19	5.43	6	1.8	"Sus scrofa mRNA, clone:SPL010016E04, expressed in spleen /gb=AK350225 /gi=288781086 /ug=Ssc.27210 /len=1811"	GO:0043231//intracellular membrane-bounded organelle	GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0006917//induction of apoptosis;GO:0006796//phosphate metabolic process;GO:0010468//regulation of gene expression;GO:0006464//protein modification process	gi|219521984|ref|NP_001137179.1|/0/fas-activated serine/threonine kinase [Sus scrofa]
gnl|UG|Ssc#S33389635	2	0.58	0	0	0	0	"Sus scrofa potassium voltage-gated channel, delayed-rectifier, subfamily S (Kcns3) mRNA, complete cds /cds=p(469,1944) /gb=DQ005443 /gi=67097561 /ug=Ssc.27767 /len=2199"	GO:0043231//intracellular membrane-bounded organelle;GO:0005887//integral to plasma membrane	GO:0005249//voltage-gated potassium channel activity;GO:0016247//channel regulator activity	GO:0030073//insulin secretion;GO:0015980//energy derivation by oxidation of organic compounds;GO:0034220//ion transmembrane transport;GO:0030001//metal ion transport	gi|113205834|ref|NP_001038061.1|/0/potassium voltage-gated channel subfamily S member 3 [Sus scrofa]
gnl|UG|Ssc#S40201336	13	3.74	3	0.86	12	3.61	"ruio19_n21.y1 kid Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW296243 /gi=182520794 /ug=Ssc.63749 /len=610"	-	-	-	-
gnl|UG|Ssc#S58313076	8	2.3	0	0	8	2.4	"PREDICTED: Sus scrofa transportin-2-like (LOC100519078), mRNA /cds=p(65,2728) /gb=XM_003123316 /gi=311248906 /ug=Ssc.5646 /len=2728"	GO:0043231//intracellular membrane-bounded organelle	GO:0005048//signal sequence binding;GO:0022892	GO:0015031//protein transport	"gi|114675523|ref|XP_512411.2|/0/PREDICTED: transportin 2 (importin 3, karyopherin beta 2b) [Pan troglodytes]"
gnl|UG|Ssc#S35164280	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVR010002A02, expressed in ovary /gb=AK234059 /gi=115555446 /ug=Ssc.15105 /len=2827"	-	-	-	-
gnl|UG|Ssc#S58308971	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa leukocyte receptor cluster member 8 homolog (LOC100524682), mRNA /cds=p(1,2436) /gb=XM_003127427 /gi=311258158 /ug=Ssc.10310 /len=2436"	-	GO:0005488//binding	-	gi|311258159|ref|XP_003127475.1|/0/PREDICTED: leukocyte receptor cluster member 8 homolog [Sus scrofa]
gnl|UG|Ssc#S35164653	44	12.67	97	27.73	54	16.23	"Sus scrofa mRNA, clone:UTR010048G08, expressed in uterus /gb=AK240272 /gi=115555073 /ug=Ssc.12072 /len=1103"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|194213007|ref|XP_001505163.2|/9.09169e-106/PREDICTED: similar to thymocyte nuclear protein 1 [Equus caballus]
gnl|UG|Ssc#S46875821	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa vascular endothelial growth factor D-like (LOC100155670), mRNA /cds=p(467,1531) /gb=XM_001928382 /gi=311275966 /ug=Ssc.29289 /len=1780"	GO:0031091//platelet alpha granule;GO:0044421//extracellular region part	GO:0005172//vascular endothelial growth factor receptor binding;GO:0042802//identical protein binding	GO:0007599//hemostasis;GO:0050927//positive regulation of positive chemotaxis;GO:0002690//positive regulation of leukocyte chemotaxis;GO:0008283//cell proliferation;GO:0006887//exocytosis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0034097//response to cytokine stimulus;GO:0001819//positive regulation of cytokine production;GO:0009966//regulation of signal transduction;GO:0048869;GO:0045765//regulation of angiogenesis;GO:0001775//cell activation	gi|194044789|ref|XP_001928417.1|/0/PREDICTED: vascular endothelial growth factor D-like [Sus scrofa]
gnl|UG|Ssc#S58308107	39	11.23	53	15.15	55	16.53	"PREDICTED: Sus scrofa tripartite motif-containing protein 39-like (LOC100513096), mRNA /cds=p(1,1107) /gb=XM_003128296 /gi=311260080 /ug=Ssc.72459 /len=1147"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0060089;GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0007165//signal transduction;GO:0012501//programmed cell death	gi|311260081|ref|XP_003128344.1|/0/PREDICTED: tripartite motif-containing protein 39-like [Sus scrofa]
gnl|UG|Ssc#S46880371	6	1.73	3	0.86	0	0	"PREDICTED: Sus scrofa RALBP1 associated Eps domain containing 1, transcript variant 1 (REPS1), mRNA /cds=p(1,2385) /gb=XM_001925993 /gi=194035335 /ug=Ssc.11142 /len=2589"	GO:0012505//endomembrane system;GO:0016020//membrane	GO:0046872//metal ion binding;GO:0019904//protein domain specific binding	-	gi|194035336|ref|XP_001926028.1|/0/PREDICTED: ralBP1-associated Eps domain-containing protein 1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S17504933	3	0.86	2	0.57	0	0	"885315 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF792389 /gi=37796950 /ug=Ssc.22373 /len=615"	-	-	-	-
gnl|UG|Ssc#S58305333	5	1.44	2	0.57	5	1.5	"PREDICTED: Sus scrofa ubiquitin-associated domain-containing protein 2-like (LOC100522823), mRNA /cds=p(1,360) /gb=XM_003131064 /gi=311266486 /ug=Ssc.47078 /len=1687"	GO:0031224//intrinsic to membrane	-	-	gi|311266487|ref|XP_003131112.1|/1.17464e-63/PREDICTED: ubiquitin-associated domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35167334	0	0	6	1.72	0	0	"Sus scrofa mRNA, clone:OVRM10189C04, expressed in ovary /gb=AK236410 /gi=115552405 /ug=Ssc.33574 /len=1895"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|311257477|ref|XP_003127141.1|/0/PREDICTED: zinc finger protein 829-like [Sus scrofa]
gnl|UG|Ssc#S58304304	164	47.22	55	15.72	121	36.36	"PREDICTED: Sus scrofa upstream binding protein 1 (LBP-1a) (UBP1), partial mRNA /cds=p(1,1501) /gb=XM_003132094 /gi=311268634 /ug=Ssc.40339 /len=3392"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0016564//transcription repressor activity;GO:0001071//nucleic acid binding transcription factor activity	"GO:0048646//anatomical structure formation involved in morphogenesis;GO:0006355//regulation of transcription, DNA-dependent;GO:0019058//viral infectious cycle"	"gi|311268635|ref|XP_003132142.1|/0/PREDICTED: upstream-binding protein 1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58313965	57	16.41	59	16.87	22	6.61	"PREDICTED: Sus scrofa histone-lysine N-methyltransferase SUV420H1-like, transcript variant 1 (LOC100521358), mRNA /cds=p(836,2263) /gb=XM_003122431 /gi=311247097 /ug=Ssc.21018 /len=5113"	GO:0000794//condensed nuclear chromosome	GO:0005488//binding;GO:0018024//histone-lysine N-methyltransferase activity	GO:0016571//histone methylation	gi|73982742|ref|XP_540811.2|/0/PREDICTED: similar to suppressor of variegation 4-20 homolog 1 isoform 1 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S55322343	17	4.89	7	2	13	3.91	"Sus scrofa mRNA, clone:DCI010071B01, expressed in dendritic cells (immature) /gb=AK344540 /gi=288782529 /ug=Ssc.10147 /len=1458"	GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|296199013|ref|XP_002747069.1|/3.52527e-122/PREDICTED: ribosome production factor 2 homolog [Callithrix jacchus]
gnl|UG|Ssc#S55326681	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10031F03, expressed in ovary /gb=AK347970 /gi=288778145 /ug=Ssc.39036 /len=1613"	GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane;GO:0031090//organelle membrane	GO:0016215;GO:0005506//iron ion binding	GO:0000038//very long-chain fatty acid metabolic process;GO:0006633//fatty acid biosynthetic process;GO:0006091//generation of precursor metabolites and energy;GO:0051234//establishment of localization	gi|282555015|gb|ADA82605.1|/0/fatty acid desaturase 2 [Sus scrofa]
gnl|UG|Ssc#S40066476	30	8.64	19	5.43	8	2.4	"rfat0103_o24.y1 fat Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW161383 /gi=182492037 /ug=Ssc.1812 /len=606"	-	-	-	-
gnl|UG|Ssc#S55326141	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10187C12, expressed in ovary /gb=AK348510 /gi=288778685 /ug=Ssc.79172 /len=1975"	-	-	-	-
gnl|UG|Ssc#S35167479	121	34.84	211	60.31	162	48.69	"Sus scrofa mRNA, clone:AMP010010H06, expressed in alveolar macrophage /gb=AK230569 /gi=115552260 /ug=Ssc.7550 /len=3036"	GO:0005681//spliceosomal complex	"GO:0042623//ATPase activity, coupled;GO:0004386//helicase activity;GO:0032559"	GO:0006396//RNA processing;GO:0009207	gi|311261931|ref|XP_003128933.1|/0/PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Sus scrofa]
gnl|UG|Ssc#S46879745	29	8.35	46	13.15	18	5.41	"PREDICTED: Sus scrofa translocation associated membrane protein 1 (TRAM1), mRNA /cds=p(1,1491) /gb=XM_001924618 /gi=311253741 /ug=Ssc.23988 /len=2991"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0004871//signal transducer activity	GO:0006612//protein targeting to membrane	gi|311253742|ref|XP_001924653.2|/0/PREDICTED: translocating chain-associated membrane protein 1 [Sus scrofa]
gnl|UG|Ssc#S20116409	5	1.44	2	0.57	6	1.8	"Sus scrofa calcium channel, voltage-dependent, alpha 2/delta subunit 1 (CACNA2D1), mRNA /cds=p(25,3300) /gb=NM_214183 /gi=47523445 /ug=Ssc.16114 /len=3842"	-	-	-	-
gnl|UG|Ssc#S58305795	18	5.18	63	18.01	17	5.11	"PREDICTED: Sus scrofa neuron navigator 1 (NAV1), mRNA /cds=p(21,1700) /gb=XM_003130607 /gi=311265430 /ug=Ssc.4867 /len=2230"	GO:0015630//microtubule cytoskeleton	GO:0005488//binding;GO:0016462//pyrophosphatase activity	GO:0048731;GO:0048869	gi|311265431|ref|XP_003130655.1|/0/PREDICTED: neuron navigator 1-like [Sus scrofa]
gnl|UG|Ssc#S18353912	97	27.93	10	2.86	81	24.34	"892919 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK449357 /gi=40796571 /ug=Ssc.21216 /len=728"	GO:0043231//intracellular membrane-bounded organelle;GO:0000502//proteasome complex	GO:0004175//endopeptidase activity;GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0051704"	gi|222136592|ref|NP_001138374.1|/9.15276e-115/proteasome subunit beta type-3 [Sus scrofa]
gnl|UG|Ssc#S18359743	65	18.71	216	61.74	30	9.02	"915736 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK455184 /gi=40802398 /ug=Ssc.94268 /len=732"	-	-	-	gi|281354217|gb|EFB29801.1|/2.36451e-15/hypothetical protein PANDA_008428 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58312922	5	1.44	0	0	3	0.9	"PREDICTED: Sus scrofa solute carrier family 35, member E1 (SLC35E1), mRNA /cds=p(8,1246) /gb=XM_003123474 /gi=311249218 /ug=Ssc.73808 /len=1246"	GO:0031224//intrinsic to membrane	-	GO:0051234//establishment of localization	gi|311249219|ref|XP_003123522.1|/0/PREDICTED: solute carrier family 35 member E1-like [Sus scrofa]
gnl|UG|Ssc#S20937661	168	48.37	155	44.31	218	65.51	"AJ649384 CSEQRAN19 Sus scrofa cDNA clone C0003272_F11, mRNA sequence /clone=C0003272_F11 /gb=AJ649384 /gi=49326229 /ug=Ssc.85489 /len=473"	GO:0031981//nuclear lumen	GO:0046983//protein dimerization activity;GO:0003711//transcription elongation regulator activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006368//transcription elongation from RNA polymerase II promoter	"gi|149056473|gb|EDM07904.1|/8.74898e-65/suppressor of Ty 5 homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S58307373	46	13.24	22	6.29	51	15.33	"PREDICTED: Sus scrofa signal recognition particle 72 kDa protein-like (LOC100520920), mRNA /cds=p(133,2151) /gb=XM_003129022 /gi=311262215 /ug=Ssc.11084 /len=4138"	GO:0016020//membrane;GO:0031981//nuclear lumen;GO:0048500//signal recognition particle	GO:0043021//ribonucleoprotein binding;GO:0003723//RNA binding	GO:0006613//cotranslational protein targeting to membrane;GO:0042221//response to chemical stimulus	gi|311262216|ref|XP_003129070.1|/0/PREDICTED: LOW QUALITY PROTEIN: signal recognition particle 72 kDa protein-like [Sus scrofa]
gnl|UG|Ssc#S58301064	19	5.47	17	4.86	13	3.91	"PREDICTED: Sus scrofa hypothetical protein LOC100514505 (LOC100514505), mRNA /cds=p(176,1429) /gb=XM_003135336 /gi=311276846 /ug=Ssc.16504 /len=1759"	-	-	-	-
gnl|UG|Ssc#S6057818	121	34.84	307	87.76	97	29.15	"MI-P-H3-afa-h-09-1-UM.s1 MI-P-H3 Sus scrofa cDNA clone MI-P-H3-afa-h-09-1-UM 3', mRNA sequence /clone=MI-P-H3-afa-h-09-1-UM /clone_end=3' /gb=BQ601320 /gi=21548046 /ug=Ssc.56373 /len=641"	-	-	-	-
gnl|UG|Ssc#S58301670	471	135.6	238	68.03	588	176.71	"PREDICTED: Sus scrofa neural Wiskott-Aldrich syndrome protein-like (LOC100525017), mRNA /cds=p(1202,2719) /gb=XM_003134725 /gi=311275506 /ug=Ssc.21951 /len=5309"	GO:0031981//nuclear lumen;GO:0016020//membrane;GO:0031252//cell leading edge;GO:0005856//cytoskeleton;GO:0012505//endomembrane system;GO:0044444//cytoplasmic part	GO:0030695//GTPase regulator activity;GO:0008092//cytoskeletal protein binding	"GO:0006351//transcription, DNA-dependent;GO:0032768;GO:0051707//response to other organism;GO:0030030//cell projection organization;GO:0007015//actin filament organization;GO:0065003;GO:0006935//chemotaxis"	gi|311275507|ref|XP_003134773.1|/1.60258e-142/PREDICTED: neural Wiskott-Aldrich syndrome protein-like [Sus scrofa]
gnl|UG|Ssc#S55325639	25	7.2	6	1.72	35	10.52	"Sus scrofa mRNA, clone:PBL010100B01, expressed in peripheral blood mononuclear cells /gb=AK349012 /gi=288779187 /ug=Ssc.44857 /len=2333"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0042598//vesicular fraction;GO:0044444//cytoplasmic part	GO:0051427;GO:0004713//protein tyrosine kinase activity;GO:0008092//cytoskeletal protein binding;GO:0032559;GO:0043169//cation binding;GO:0019900//kinase binding	GO:0070848//response to growth factor stimulus;GO:0010467//gene expression;GO:0050851//antigen receptor-mediated signaling pathway;GO:0009895;GO:0050974//detection of mechanical stimulus involved in sensory perception;GO:0007420//brain development;GO:0006468//protein phosphorylation;GO:0008366//axon ensheathment;GO:0032870//cellular response to hormone stimulus;GO:0007215//glutamate signaling pathway;GO:0016477//cell migration;GO:0042098//T cell proliferation	gi|47217443|emb|CAG10212.1|/3.0966e-161/unnamed protein product [Tetraodon nigroviridis]
gnl|UG|Ssc#S21929814	318	91.55	201	57.46	473	142.15	"Sus scrofa v-myc myelocytomatosis viral oncogene homolog (avian) (MYC), mRNA /cds=p(592,1950) /gb=NM_001005154 /gi=52346219 /ug=Ssc.21433 /len=2464"	GO:0015630//microtubule cytoskeleton;GO:0044451//nucleoplasm part	GO:0030528//transcription regulator activity;GO:0010843//promoter binding	"GO:0008637//apoptotic mitochondrial changes;GO:0042221//response to chemical stimulus;GO:0000737//DNA catabolic process, endonucleolytic;GO:0010629//negative regulation of gene expression;GO:0006355//regulation of transcription, DNA-dependent;GO:0006917//induction of apoptosis;GO:0022402//cell cycle process;GO:0009628//response to abiotic stimulus;GO:0048754//branching morphogenesis of a tube;GO:0000723//telomere maintenance;GO:0002053//positive regulation of mesenchymal cell proliferation;GO:0006875//cellular metal ion homeostasis"	gi|153070819|ref|NP_001005154.2|/0/myc proto-oncogene protein [Sus scrofa]
gnl|UG|Ssc#S58300938	0	0	4	1.14	2	0.6	"PREDICTED: Sus scrofa myotubularin related protein 1 (MTMR1), mRNA /cds=p(1,2016) /gb=XM_003135465 /gi=311277121 /ug=Ssc.36032 /len=2496"	GO:0016020//membrane;GO:0044424//intracellular part	GO:0004437//inositol or phosphatidylinositol phosphatase activity;GO:0004721//phosphoprotein phosphatase activity	GO:0006470//protein dephosphorylation	gi|311277122|ref|XP_003135513.1|/0/PREDICTED: myotubularin-related protein 1-like [Sus scrofa]
gnl|UG|Ssc#S20116681	4	1.15	0	0	0	0	"Sus scrofa diacylglycerol kinase, alpha 80kDa (DGKA), mRNA /cds=p(282,2486) /gb=NM_214032 /gi=209954842 /ug=Ssc.54911 /len=2772"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0046872//metal ion binding;GO:0008289//lipid binding;GO:0016301//kinase activity;GO:0032559	GO:0001775//cell activation;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0006796//phosphate metabolic process;GO:0007599//hemostasis	gi|47522884|ref|NP_999197.1|/0/diacylglycerol kinase alpha [Sus scrofa]
gnl|UG|Ssc#S58310308	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa adenylate cyclase 6, transcript variant 1 (ADCY6), mRNA /cds=p(1,3501) /gb=XM_003126088 /gi=311255228 /ug=Ssc.42520 /len=3501"	GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0005902//microvillus;GO:0031224//intrinsic to membrane;GO:0005886//plasma membrane	GO:0005515//protein binding;GO:0004016//adenylate cyclase activity;GO:0032559;GO:0043169//cation binding	"GO:0015980//energy derivation by oxidation of organic compounds;GO:0007267//cell-cell signaling;GO:0045762//positive regulation of adenylate cyclase activity;GO:0033762//response to glucagon stimulus;GO:0032147//activation of protein kinase activity;GO:0010863//positive regulation of phospholipase C activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007188//G-protein signaling, coupled to cAMP nucleotide second messenger;GO:0042044//fluid transport"	gi|311255229|ref|XP_003126136.1|/0/PREDICTED: adenylate cyclase type 6-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58312763	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2-like (LOC100518539), partial mRNA /cds=p(1,1592) /gb=XM_003123638 /gi=311249540 /ug=Ssc.48300 /len=1592"	GO:0044444//cytoplasmic part	GO:0008483//transaminase activity;GO:0030246//carbohydrate binding	GO:0006045//N-acetylglucosamine biosynthetic process;GO:0009064//glutamine family amino acid metabolic process;GO:0015980//energy derivation by oxidation of organic compounds;GO:0006000//fructose metabolic process;GO:0006487//protein N-linked glycosylation	"gi|311249541|ref|XP_003123686.1|/0/PREDICTED: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S6073579	12	3.45	13	3.72	15	4.51	"UNL-P-FN-bs-c-02-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-bs-c-02-0-UNL 3', mRNA sequence /clone=UNL-P-FN-bs-c-02-0-UNL /clone_end=3' /gb=BI183439 /gi=14657848 /ug=Ssc.20180 /len=720"	-	-	-	-
gnl|UG|Ssc#S56463142	3	0.86	0	0	0	0	"Sus scrofa glutamine:fructose-6-phosphate amidotransferase 1 variant 2 (GFAT1) mRNA, complete cds, alternatively spliced /cds=p(41,2140) /gb=EU921673 /gi=213958608 /ug=Ssc.22631 /len=3023"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0030246//carbohydrate binding;GO:0031406//carboxylic acid binding;GO:0008483//transaminase activity	GO:0032868//response to insulin stimulus;GO:0034285;GO:0006000//fructose metabolic process;GO:0009064//glutamine family amino acid metabolic process;GO:0006487//protein N-linked glycosylation;GO:0005979//regulation of glycogen biosynthetic process;GO:0006045//N-acetylglucosamine biosynthetic process;GO:0051260//protein homooligomerization	gi|213958609|gb|ACJ54701.1|/0/glutamine:fructose-6-phosphate amidotransferase 1 variant 2 [Sus scrofa]
gnl|UG|Ssc#S46876441	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa probable palmitoyltransferase ZDHHC8-like (LOC100157140), mRNA /cds=p(1,2295) /gb=XM_001929653 /gi=311271118 /ug=Ssc.48947 /len=3291"	GO:0012506//vesicle membrane;GO:0031224//intrinsic to membrane	"GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups;GO:0046914//transition metal ion binding"	GO:0050896//response to stimulus	gi|194043495|ref|XP_001929688.1|/0/PREDICTED: probable palmitoyltransferase ZDHHC8-like [Sus scrofa]
gnl|UG|Ssc#S58302488	9	2.59	6	1.72	8	2.4	"PREDICTED: Sus scrofa disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila) (DAB2), mRNA /cds=p(102,2411) /gb=XM_003133906 /gi=311273621 /ug=Ssc.2807 /len=4164"	GO:0043231//intracellular membrane-bounded organelle;GO:0031410//cytoplasmic vesicle;GO:0012505//endomembrane system	GO:0005515//protein binding	"GO:0043393//regulation of protein binding;GO:0006355//regulation of transcription, DNA-dependent;GO:0000902//cell morphogenesis;GO:0043009//chordate embryonic development;GO:0060071//Wnt receptor signaling pathway, planar cell polarity pathway;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0001932//regulation of protein phosphorylation;GO:0006897//endocytosis;GO:0031331;GO:0016049//cell growth;GO:0003008"	gi|311273622|ref|XP_003133954.1|/0/PREDICTED: disabled homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S46875867	10	2.88	3	0.86	8	2.4	"PREDICTED: Sus scrofa zinc finger, SWIM-type containing 3 (ZSWIM3), mRNA /cds=p(1,2097) /gb=XM_001926173 /gi=311274974 /ug=Ssc.93791 /len=2097"	-	GO:0046914//transition metal ion binding	-	gi|311274975|ref|XP_001926208.2|/0/PREDICTED: zinc finger SWIM domain-containing protein 3 [Sus scrofa]
gnl|UG|Ssc#S58312333	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa RNA binding motif protein 27 (RBM27), mRNA /cds=p(1,1896) /gb=XM_003124070 /gi=311250427 /ug=Ssc.60484 /len=2176"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0006396//RNA processing	gi|311250428|ref|XP_003124118.1|/0/PREDICTED: RNA-binding protein 27-like [Sus scrofa]
gnl|UG|Ssc#S58310539	33	9.5	8	2.29	30	9.02	"PREDICTED: Sus scrofa protein FAM40A-like (LOC100510902), mRNA /cds=p(1,2514) /gb=XM_003125856 /gi=311254632 /ug=Ssc.23991 /len=3226"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|311254633|ref|XP_003125904.1|/0/PREDICTED: protein FAM40A-like [Sus scrofa]
gnl|UG|Ssc#S55325840	4	1.15	7	2	0	0	"Sus scrofa mRNA, clone:PBL010033F06, expressed in peripheral blood mononuclear cells /gb=AK348811 /gi=288778986 /ug=Ssc.23510 /len=1994"	GO:0031224//intrinsic to membrane;GO:0042611	GO:0004888//transmembrane receptor activity	GO:0019221//cytokine-mediated signaling pathway;GO:0002682//regulation of immune system process;GO:0048002//antigen processing and presentation of peptide antigen	gi|291059131|gb|ADD71909.1|/3.69663e-51/MHC class I antigen [Sus scrofa]
gnl|UG|Ssc#S35173998	36	10.36	32	9.15	22	6.61	"Sus scrofa mRNA, clone:OVR010035E11, expressed in ovary /gb=AK234270 /gi=115545837 /ug=Ssc.19231 /len=1808"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0003723//RNA binding;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	gi|311248936|ref|XP_003123385.1|/0/PREDICTED: phenylalanyl-tRNA synthetase alpha chain-like [Sus scrofa]
gnl|UG|Ssc#S23772510	2	0.58	0	0	0	0	"1144439 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN130129 /gi=59824410 /ug=Ssc.80454 /len=739"	-	-	-	-
gnl|UG|Ssc#S14895824	109	31.38	78	22.3	144	43.28	"jns40_E06.f jns Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CB478742 /gi=29285128 /ug=Ssc.82744 /len=463"	GO:0043231//intracellular membrane-bounded organelle;GO:0015935//small ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0007417//central nervous system development;GO:0051707//response to other organism;GO:0051726//regulation of cell cycle;GO:0031016//pancreas development;GO:0008283//cell proliferation	gi|30109302|gb|AAH51205.1|/1.62196e-68/Rps15a protein [Mus musculus]
gnl|UG|Ssc#S58311358	3	0.86	0	0	3	0.9	"PREDICTED: Sus scrofa protein TEX261-like (LOC100522925), mRNA /cds=p(32,622) /gb=XM_003125039 /gi=311252425 /ug=Ssc.19198 /len=3146"	GO:0031224//intrinsic to membrane	-	GO:0006915//apoptosis	gi|311252426|ref|XP_003125087.1|/2.50036e-108/PREDICTED: protein TEX261-like [Sus scrofa]
gnl|UG|Ssc#S35173935	3	0.86	0	0	5	1.5	"Sus scrofa mRNA, clone:OVR010044E01, expressed in ovary /gb=AK234333 /gi=115545900 /ug=Ssc.936 /len=1382"	GO:0030054//cell junction;GO:0032432//actin filament bundle	GO:0008092//cytoskeletal protein binding	GO:0016477//cell migration;GO:0009611//response to wounding;GO:0030036//actin cytoskeleton organization;GO:0048534;GO:0045806//negative regulation of endocytosis;GO:0010467//gene expression;GO:0008283//cell proliferation;GO:0009612//response to mechanical stimulus	"gi|584955|sp|Q08094.1|CNN2_PIG/6.98499e-157/RecName: Full=Calponin-2; AltName: Full=Calponin H2, smooth muscle; AltName: Full=Neutral calponin"
gnl|UG|Ssc#S58308384	9	2.59	0	0	5	1.5	"PREDICTED: Sus scrofa SCL/TAL1 interrupting locus (STIL), partial mRNA /cds=p(1,2619) /gb=XM_003128015 /gi=311259361 /ug=Ssc.5821 /len=3341"	GO:0044444//cytoplasmic part	-	GO:0014020;GO:0006915//apoptosis;GO:0009880//embryonic pattern specification;GO:0003143//embryonic heart tube morphogenesis;GO:0007420//brain development;GO:0040007//growth;GO:0009855//determination of bilateral symmetry;GO:0048568//embryonic organ development;GO:0007166//cell surface receptor linked signaling pathway	"gi|311259362|ref|XP_003128063.1|/0/PREDICTED: SCL-interrupting locus protein-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58311593	0	0	3	0.86	4	1.2	"PREDICTED: Sus scrofa hypothetical protein LOC100519137 (LOC100519137), mRNA /cds=p(395,880) /gb=XM_003124810 /gi=311251950 /ug=Ssc.77393 /len=880"	-	-	-	gi|311251951|ref|XP_003124858.1|/1.15596e-38/PREDICTED: hypothetical protein LOC100519137 [Sus scrofa]
gnl|UG|Ssc#S55327558	47	13.53	64	18.29	52	15.63	"Sus scrofa DIS3 mitotic control-like protein (DIS3L2) mRNA, complete cds /cds=p(148,2799) /gb=GU373702 /gi=285818457 /ug=Ssc.18239 /len=3173"	-	GO:0003676//nucleic acid binding;GO:0004518//nuclease activity	-	gi|305855184|ref|NP_001182262.1|/0/DIS3-like exonuclease 2 [Sus scrofa]
gnl|UG|Ssc#S35172940	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:SPL010087H04, expressed in spleen /gb=AK237741 /gi=115546895 /ug=Ssc.4607 /len=3496"	GO:0044444//cytoplasmic part;GO:0000151//ubiquitin ligase complex;GO:0005887//integral to plasma membrane	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0051091//positive regulation of transcription factor activity;GO:0016567//protein ubiquitination;GO:0050851//antigen receptor-mediated signaling pathway;GO:0007249//I-kappaB kinase/NF-kappaB cascade	gi|194038861|ref|XP_001928270.1|/0/PREDICTED: RING finger protein 31 [Sus scrofa]
gnl|UG|Ssc#S58313039	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa protein kinase, cAMP-dependent, catalytic, alpha, transcript variant 1 (PRKACA), mRNA /cds=p(1,1056) /gb=XM_003123353 /gi=311248982 /ug=Ssc.13872 /len=2398"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0005626//insoluble fraction;GO:0045202//synapse;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0004690//cyclic nucleotide-dependent protein kinase activity;GO:0019900//kinase binding;GO:0032559;GO:0030291//protein serine/threonine kinase inhibitor activity	GO:0006641//triglyceride metabolic process;GO:0006006//glucose metabolic process;GO:0001704//formation of primary germ layer;GO:0050804//regulation of synaptic transmission;GO:0033762//response to glucagon stimulus;GO:0042044//fluid transport;GO:0015980//energy derivation by oxidation of organic compounds;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0032147//activation of protein kinase activity;GO:0022402//cell cycle process;GO:0010863//positive regulation of phospholipase C activity;GO:0043467//regulation of generation of precursor metabolites and energy;GO:0032870//cellular response to hormone stimulus;GO:0030073//insulin secretion;GO:0007599//hemostasis;GO:0035556//intracellular signal transduction;GO:0045786//negative regulation of cell cycle;GO:0046824//positive regulation of nucleocytoplasmic transport	gi|311248983|ref|XP_003123401.1|/0/PREDICTED: cAMP-dependent protein kinase catalytic subunit alpha isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55321240	3	0.86	3	0.86	3	0.9	"Sus scrofa mRNA, clone:ITT010090B09, expressed in small intestine /gb=AK345247 /gi=288783632 /ug=Ssc.48045 /len=1173"	-	GO:0016741	-	gi|311251147|ref|XP_003124461.1|/3.31482e-132/PREDICTED: LOW QUALITY PROTEIN: Williams-Beuren syndrome chromosomal region 27 protein-like [Sus scrofa]
gnl|UG|Ssc#S46880908	71	20.44	86	24.58	30	9.02	"PREDICTED: Sus scrofa multicatalytic proteinase subunit K, transcript variant 1 (LOC100154408), mRNA /cds=p(117,884) /gb=XM_001927990 /gi=311245575 /ug=Ssc.7439 /len=1055"	GO:0043231//intracellular membrane-bounded organelle;GO:0005839//proteasome core complex	GO:0004175//endopeptidase activity;GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0051704"	"gi|148704620|gb|EDL36567.1|/4.34853e-134/proteasome (prosome, macropain) subunit, alpha type 3, isoform CRA_e [Mus musculus]"
gnl|UG|Ssc#S58309409	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa NEDD4-binding protein 1-like (LOC100520431), partial mRNA /cds=p(1,2496) /gb=XM_003126990 /gi=311257268 /ug=Ssc.24220 /len=3440"	GO:0016604//nuclear body	-	GO:0016567//protein ubiquitination;GO:0031330	"gi|311257269|ref|XP_003127038.1|/0/PREDICTED: LOW QUALITY PROTEIN: NEDD4-binding protein 1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S40072314	2	0.58	0	0	5	1.5	"rfat0140_c20.y1 fat Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW167221 /gi=182489335 /ug=Ssc.60401 /len=612"	-	-	-	-
gnl|UG|Ssc#S58306483	79	22.74	74	21.15	80	24.04	"PREDICTED: Sus scrofa probable ATP-dependent RNA helicase DDX6-like (LOC100515499), mRNA /cds=p(370,1821) /gb=XM_003129914 /gi=311264023 /ug=Ssc.81979 /len=2555"	GO:0031981//nuclear lumen;GO:0031332;GO:0044444//cytoplasmic part	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0003724//RNA helicase activity;GO:0032559"	"GO:0009207;GO:0000291//nuclear-transcribed mRNA catabolic process, exonucleolytic;GO:0032501//multicellular organismal process"	gi|311264024|ref|XP_003129962.1|/0/PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Sus scrofa]
gnl|UG|Ssc#S23700905	30	8.64	17	4.86	18	5.41	"1111168 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN112008 /gi=59790674 /ug=Ssc.82437 /len=843"	-	-	-	-
gnl|UG|Ssc#S46924899	13	3.74	4	1.14	11	3.31	"Sus scrofa adaptor protein phosphotyrosine interaction PH domain and leucine zipper containing 1 (APPL1) mRNA, complete cds /cds=p(1,2127) /gb=EU918201 /gi=197130944 /ug=Ssc.11881 /len=2127"	GO:0000118//histone deacetylase complex;GO:0005769//early endosome;GO:0031090//organelle membrane;GO:0012505//endomembrane system;GO:0042598//vesicular fraction	GO:0019901//protein kinase binding	GO:0006915//apoptosis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0051128//regulation of cellular component organization;GO:0010827//regulation of glucose transport	gi|201066354|ref|NP_001128438.1|/0/DCC-interacting protein 13-alpha [Sus scrofa]
gnl|UG|Ssc#S58302820	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa aldehyde oxidase-like (LOC100523701), partial mRNA /cds=p(1,3552) /gb=XM_003133576 /gi=311272871 /ug=Ssc.79155 /len=3552"	-	-	-	-
gnl|UG|Ssc#S55319111	44	12.67	123	35.16	32	9.62	"Sus scrofa mRNA, clone:MLN010014H10, expressed in mesenteric lymph nodes /gb=AK346580 /gi=288785773 /ug=Ssc.20618 /len=1591"	GO:0000178//exosome (RNase complex);GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0003723//RNA binding;GO:0008408//3'-5' exonuclease activity	"GO:0016075//rRNA catabolic process;GO:0016049//cell growth;GO:0002376//immune system process;GO:0000291//nuclear-transcribed mRNA catabolic process, exonucleolytic;GO:0042254//ribosome biogenesis;GO:0010467//gene expression"	gi|301776905|ref|XP_002923870.1|/0/PREDICTED: exosome complex exonuclease RRP45-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46876897	12	3.45	14	4	9	2.7	"PREDICTED: Sus scrofa AT rich interactive domain 4B (RBP1-like) (ARID4B), mRNA /cds=p(1,3993) /gb=XM_001924429 /gi=311271141 /ug=Ssc.58669 /len=5622"	GO:0044424//intracellular part	GO:0005488//binding	-	gi|194042557|ref|XP_001924464.1|/0/PREDICTED: AT-rich interactive domain-containing protein 4B [Sus scrofa]
gnl|UG|Ssc#S58313945	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa AH receptor-interacting protein-like (LOC100511065), mRNA /cds=p(127,1119) /gb=XM_003122456 /gi=311247137 /ug=Ssc.5050 /len=1667"	GO:0005626//insoluble fraction;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0003712//transcription cofactor activity;GO:0060089;GO:0005515//protein binding	GO:0006457//protein folding;GO:0006605//protein targeting;GO:0010627//regulation of intracellular protein kinase cascade;GO:0051342	gi|311247138|ref|XP_003122504.1|/0/PREDICTED: AH receptor-interacting protein-like [Sus scrofa]
gnl|UG|Ssc#S17515541	9	2.59	2	0.57	18	5.41	"BX670110 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0034.n.11 3prim, mRNA sequence /clone=scac0034.n.11 /clone_end=3' /gb=BX670110 /gi=90238057 /ug=Ssc.1641 /len=1111"	GO:0016021//integral to membrane;GO:0044459//plasma membrane part	GO:0005488//binding	GO:0033036;GO:0001934//positive regulation of protein phosphorylation;GO:0043126;GO:0030260//entry into host cell;GO:0046474//glycerophospholipid biosynthetic process;GO:0030888//regulation of B cell proliferation;GO:0022415;GO:0006950//response to stress;GO:0016049//cell growth;GO:0000165//MAPKKK cascade	gi|11131665|sp|O97703.1|CD81_CERAE/1.04772e-06/RecName: Full=CD81 antigen; AltName: CD_antigen=CD81
gnl|UG|Ssc#S55293376	4	1.15	2	0.57	3	0.9	"FS671664 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010006G10 5', mRNA sequence /clone=KDN010006G10 /clone_end=5' /gb=FS671664 /gi=288292150 /ug=Ssc.38726 /len=808"	-	-	-	gi|281338665|gb|EFB14249.1|/5.41597e-77/hypothetical protein PANDA_004897 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40111476	0	0	2	0.57	3	0.9	"rfhi4026b_o15.y1 fhi Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW206383 /gi=182491230 /ug=Ssc.91453 /len=223"	-	-	-	-
gnl|UG|Ssc#S20937679	858	247.02	546	156.07	565	169.8	"AJ649402 CSEQRAN19 Sus scrofa cDNA clone C0003272_G05, mRNA sequence /clone=C0003272_G05 /gb=AJ649402 /gi=49326247 /ug=Ssc.74123 /len=555"	"GO:0033178//proton-transporting two-sector ATPase complex, catalytic domain;GO:0005753//mitochondrial proton-transporting ATP synthase complex;GO:0005667//transcription factor complex"	GO:0046914//transition metal ion binding;GO:0019829//cation-transporting ATPase activity;GO:0015078//hydrogen ion transmembrane transporter activity	GO:0009180;GO:0006818//hydrogen transport;GO:0022900//electron transport chain;GO:0009207;GO:0006754//ATP biosynthetic process;GO:0006839//mitochondrial transport	gi|45478238|gb|AAS66290.1|/3.4659e-95/LRRGT00199 [Rattus norvegicus]
gnl|UG|Ssc#S55319845	6	1.73	2	0.57	4	1.2	"Sus scrofa mRNA, clone:THY010110D06, expressed in thymus /gb=AK351920 /gi=288785039 /ug=Ssc.31057 /len=1308"	GO:0031981//nuclear lumen	GO:0046983//protein dimerization activity;GO:0003711//transcription elongation regulator activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006368//transcription elongation from RNA polymerase II promoter	gi|301784029|ref|XP_002927426.1|/1.53649e-65/PREDICTED: transcription elongation factor SPT5-like isoform 1 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S18547496	50	14.4	11	3.14	40	12.02	"BX916147 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0029.l.02 5prim, mRNA sequence /clone=scan0029.l.02 /clone_end=5' /gb=BX916147 /gi=90228922 /ug=Ssc.22519 /len=753"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0007165//signal transduction	gi|126306889|ref|XP_001367937.1|/2.20507e-74/PREDICTED: hypothetical protein [Monodelphis domestica]
gnl|UG|Ssc#S58305258	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa regulatory-associated protein of mTOR-like (LOC100512677), mRNA /cds=p(1,1167) /gb=XM_003131151 /gi=311266652 /ug=Ssc.54575 /len=1647"	GO:0043234//protein complex;GO:0043005//neuron projection;GO:0000323//lytic vacuole;GO:0044297//cell body	GO:0019900//kinase binding	GO:0009967//positive regulation of signal transduction;GO:0035556//intracellular signal transduction;GO:0031667//response to nutrient levels;GO:0040007//growth;GO:0032535;GO:0045860//positive regulation of protein kinase activity;GO:0043200//response to amino acid stimulus	gi|311266653|ref|XP_003131199.1|/0/PREDICTED: regulatory-associated protein of mTOR-like [Sus scrofa]
gnl|UG|Ssc#S6068395	3	0.86	0	0	0	0	"AR066G04IBMCG04R Infected Porcine Bone Marrow cDNA library Sus scrofa cDNA, mRNA sequence /gb=BI304884 /gi=15416222 /ug=Ssc.47434 /len=396"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427	GO:0005515//protein binding	GO:0006260//DNA replication;GO:0000087//M phase of mitotic cell cycle	gi|301779587|ref|XP_002925211.1|/6.25165e-70/PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46879727	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa cAMP-dependent 3',5'-cyclic phosphodiesterase 7A (LOC100127143), partial mRNA /cds=p(1,1173) /gb=XM_001928901 /gi=311253776 /ug=Ssc.17621 /len=2750"	GO:0044444//cytoplasmic part	"GO:0043169//cation binding;GO:0004114//3',5'-cyclic-nucleotide phosphodiesterase activity"	GO:0019935//cyclic-nucleotide-mediated signaling	"gi|311253777|ref|XP_001928936.2|/0/PREDICTED: high affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A, partial [Sus scrofa]"
gnl|UG|Ssc#S35172045	27	7.77	7	2	12	3.61	"Sus scrofa mRNA, clone:OVRM10014C11, expressed in ovary /gb=AK234766 /gi=115547790 /ug=Ssc.54816 /len=948"	GO:0043231//intracellular membrane-bounded organelle	GO:0043021//ribonucleoprotein binding;GO:0034212//peptide N-acetyltransferase activity	GO:0071103//DNA conformation change;GO:0006473//protein acetylation	gi|297711422|ref|XP_002832345.1|/6.28074e-126/PREDICTED: n-acylglucosamine 2-epimerase-like [Pongo abelii]
gnl|UG|Ssc#S58301834	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa transmembrane protein 176B-like, transcript variant 1 (LOC100517619), mRNA /cds=p(18,1025) /gb=XM_003134554 /gi=311275169 /ug=Ssc.11219 /len=1299"	-	-	-	gi|311275170|ref|XP_003134602.1|/1.44974e-116/PREDICTED: transmembrane protein 176B-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58307741	27	7.77	16	4.57	11	3.31	"PREDICTED: Sus scrofa Zinc binding alcohol dehydrogenase, domain containing 1, transcript variant 2 (LOC100156930), mRNA /cds=p(209,1264) /gb=XM_003128657 /gi=311261327 /ug=Ssc.5013 /len=1638"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016628//oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;GO:0046914//transition metal ion binding"	GO:0008152//metabolic process	gi|194038534|ref|XP_001929109.1|/0/PREDICTED: prostaglandin reductase 2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35172056	35	10.08	3	0.86	24	7.21	"Sus scrofa mRNA, clone:OVRM10013F10, expressed in ovary /gb=AK234755 /gi=115547779 /ug=Ssc.79842 /len=2566"	-	-	-	gi|74753486|sp|Q9Y3I0.1|CV028_HUMAN/0/RecName: Full=UPF0027 protein C22orf28
gnl|UG|Ssc#S35164091	0	0	0	0	0	0	"Sus scrofa mRNA, clone:SPL010019E05, expressed in spleen /gb=AK237268 /gi=115555635 /ug=Ssc.54413 /len=1413"	GO:0044439;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	-	-	gi|311274728|ref|XP_001926956.2|/8.37106e-97/PREDICTED: peroxisomal membrane protein 4 [Sus scrofa]
gnl|UG|Ssc#S35173188	344	99.04	206	58.88	466	140.05	"Sus scrofa mRNA, clone:OVR010070H08, expressed in ovary /gb=AK234485 /gi=115546647 /ug=Ssc.53738 /len=1228"	GO:0043231//intracellular membrane-bounded organelle;GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0051704;GO:0022613//ribonucleoprotein complex biogenesis;GO:0031016//pancreas development	gi|148747594|ref|NP_001092068.1|/1.42025e-142/60S acidic ribosomal protein P0 [Sus scrofa]
gnl|UG|Ssc#S22284008	2	0.58	0	0	3	0.9	"CJ026738 full-length enriched swine cDNA library, adult trachea Sus scrofa cDNA clone TCH01H070060 5', mRNA sequence /clone=TCH01H070060 /clone_end=5' /gb=CJ026738 /gi=54537094 /ug=Ssc.81995 /len=743"	GO:0005681//spliceosomal complex;GO:0044444//cytoplasmic part;GO:0005654//nucleoplasm	GO:0003676//nucleic acid binding	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	gi|311258726|ref|XP_003127751.1|/1.15961e-19/PREDICTED: hypothetical protein LOC100521629 [Sus scrofa]
gnl|UG|Ssc#S46879396	6	1.73	7	2	9	2.7	"PREDICTED: Sus scrofa transcription factor Sp1 (LOC396575), mRNA /cds=p(1,2493) /gb=XM_001926885 /gi=311255448 /ug=Ssc.79432 /len=2887"	-	-	-	-
gnl|UG|Ssc#S23213555	23	6.62	27	7.72	10	3.01	"Sus scrofa clone Clu_11038.scr.msk.p1.Contig1, mRNA sequence /gb=AY609422 /gi=52350707 /ug=Ssc.13757 /len=2437"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0005488//binding;GO:0003712//transcription cofactor activity;GO:0060089	"GO:0006355//regulation of transcription, DNA-dependent;GO:0023052//signaling;GO:0030154//cell differentiation"	gi|3309166|gb|AAC33899.1|/0/COP9 complex subunit 2 [Mus musculus]
gnl|UG|Ssc#S55321416	538	154.89	463	132.35	596	179.11	"Sus scrofa mRNA, clone:TES010094D11, expressed in testis /gb=AK351340 /gi=288783456 /ug=Ssc.54189 /len=2120"	GO:0042579//microbody;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	GO:0019842//vitamin binding;GO:0046872//metal ion binding;GO:0016744;GO:0005529//sugar binding	GO:0005997//xylulose metabolic process;GO:0050789//regulation of biological process;GO:0006098//pentose-phosphate shunt;GO:0015980//energy derivation by oxidation of organic compounds;GO:0019302	gi|162952052|ref|NP_001106151.1|/0/transketolase [Sus scrofa]
gnl|UG|Ssc#S55319607	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LVRM10130C10, expressed in liver /gb=AK346284 /gi=288785277 /ug=Ssc.28723 /len=2690"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0003712//transcription cofactor activity	"GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0006351//transcription, DNA-dependent;GO:0009653//anatomical structure morphogenesis"	gi|21361151|ref|NP_003251.2|/0/transducin-like enhancer protein 2 isoform 1 [Homo sapiens]
gnl|UG|Ssc#S23699974	0	0	2	0.57	0	0	"1110163 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN111077 /gi=59789743 /ug=Ssc.94571 /len=728"	-	-	-	-
gnl|UG|Ssc#S35169879	3	0.86	2	0.57	0	0	"Sus scrofa mRNA, clone:LNG010100G08, expressed in lung /gb=AK232195 /gi=115549960 /ug=Ssc.31115 /len=2776"	GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0004871//signal transducer activity;GO:0004721//phosphoprotein phosphatase activity	GO:0006470//protein dephosphorylation;GO:0023052//signaling	gi|109018853|ref|XP_001106613.1|/0/PREDICTED: tyrosine-protein phosphatase non-receptor type 7 isoform 3 [Macaca mulatta]
gnl|UG|Ssc#S35174309	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:AMP010020E01, expressed in alveolar macrophage /gb=AK230641 /gi=115545526 /ug=Ssc.12565 /len=2535"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0004084//branched-chain-amino-acid transaminase activity	GO:0022402//cell cycle process;GO:0008652//cellular amino acid biosynthetic process;GO:0009063//cellular amino acid catabolic process	"gi|149714030|ref|XP_001498588.1|/0/PREDICTED: branched chain aminotransferase 1, cytosolic [Equus caballus]"
gnl|UG|Ssc#S58311257	30	8.64	18	5.15	18	5.41	"PREDICTED: Sus scrofa spectrin beta chain, brain 1-like (LOC100516258), mRNA /cds=p(241,7335) /gb=XM_003125144 /gi=311252630 /ug=Ssc.442 /len=8626"	GO:0031981//nuclear lumen;GO:0032991//macromolecular complex;GO:0016020//membrane;GO:0030016//myofibril;GO:0030864//cortical actin cytoskeleton	GO:0005198//structural molecule activity;GO:0008092//cytoskeletal protein binding	GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0030835//negative regulation of actin filament depolymerization;GO:0006935//chemotaxis;GO:0006606//protein import into nucleus	"gi|311252631|ref|XP_003125192.1|/0/PREDICTED: LOW QUALITY PROTEIN: spectrin beta chain, brain 1-like [Sus scrofa]"
gnl|UG|Ssc#S40311890	18	5.18	17	4.86	22	6.61	"rmgp017_o10.y1 mgp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW406497 /gi=182743502 /ug=Ssc.91934 /len=467"	-	-	-	-
gnl|UG|Ssc#S35166147	18	5.18	5	1.43	7	2.1	"Sus scrofa mRNA, clone:THY010204A10, expressed in thymus /gb=AK239778 /gi=115553591 /ug=Ssc.20635 /len=1989"	GO:0044424//intracellular part	GO:0043169//cation binding;GO:0008238//exopeptidase activity;GO:0008237//metallopeptidase activity	GO:0018193//peptidyl-amino acid modification;GO:0051604//protein maturation	gi|194226669|ref|XP_001494422.2|/0/PREDICTED: similar to methionyl aminopeptidase 2 isoform 1 [Equus caballus]
gnl|UG|Ssc#S58308810	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa mitofusin-2-like (LOC100512354), mRNA /cds=p(1,546) /gb=XM_003127589 /gi=311258483 /ug=Ssc.73777 /len=1089"	GO:0005741//mitochondrial outer membrane;GO:0031224//intrinsic to membrane;GO:0005856//cytoskeleton	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0019899//enzyme binding	GO:0007599//hemostasis;GO:0051640//organelle localization;GO:0046578//regulation of Ras protein signal transduction;GO:0006944//cellular membrane fusion;GO:0006605//protein targeting;GO:0001824//blastocyst development;GO:0008285//negative regulation of cell proliferation;GO:0009207;GO:0048592//eye morphogenesis;GO:0022402//cell cycle process;GO:0007005//mitochondrion organization	gi|311258484|ref|XP_003127637.1|/2.55685e-76/PREDICTED: mitofusin-2-like [Sus scrofa]
gnl|UG|Ssc#S40569932	3	0.86	0	0	10	3.01	"rtra18_c10r1.y1 tra Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW656645 /gi=183114266 /ug=Ssc.92713 /len=581"	-	-	-	-
gnl|UG|Ssc#S35164904	3	0.86	2	0.57	0	0	"Sus scrofa mRNA, clone:LVRM10192G01, expressed in liver /gb=AK233634 /gi=115554822 /ug=Ssc.84366 /len=3658"	GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0006468//protein phosphorylation;GO:0050851//antigen receptor-mediated signaling pathway;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|73947262|ref|XP_541542.2|/0/PREDICTED: similar to protein kinase D2 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S19549029	107	30.81	275	78.61	96	28.85	"995543 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN165141 /gi=46179571 /ug=Ssc.40930 /len=832"	-	-	-	-
gnl|UG|Ssc#S46878326	4	1.15	0	0	4	1.2	"PREDICTED: Sus scrofa furin-like (LOC100156882), mRNA /cds=p(1,2394) /gb=XM_001929347 /gi=194039581 /ug=Ssc.94009 /len=2394"	GO:0030658//transport vesicle membrane;GO:0031224//intrinsic to membrane;GO:0005795//Golgi stack;GO:0005768//endosome;GO:0005798//Golgi-associated vesicle;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity;GO:0043121//neurotrophin binding;GO:0043169//cation binding;GO:0004866//endopeptidase inhibitor activity;GO:0019899//enzyme binding	GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0006518//peptide metabolic process;GO:0031330;GO:0032900//negative regulation of neurotrophin production;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0019058//viral infectious cycle;GO:0031331;GO:0016486//peptide hormone processing;GO:0018200;GO:0016477//cell migration;GO:0046903//secretion;GO:0032905;GO:0032502//developmental process;GO:0010466//negative regulation of peptidase activity	gi|194039582|ref|XP_001929382.1|/0/PREDICTED: furin-like [Sus scrofa]
gnl|UG|Ssc#S55319731	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10082D10, expressed in liver /gb=AK346160 /gi=288785153 /ug=Ssc.19267 /len=2116"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0008146//sulfotransferase activity;GO:0043168	GO:0030205	gi|311244994|ref|XP_003121642.1|/0/PREDICTED: carbohydrate sulfotransferase 14-like [Sus scrofa]
gnl|UG|Ssc#S35166321	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10208H03, expressed in ovary /gb=AK236620 /gi=115553417 /ug=Ssc.48261 /len=1992"	GO:0031981//nuclear lumen	GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0034062//RNA polymerase activity;GO:0001882//nucleoside binding	"GO:0051707//response to other organism;GO:0031349//positive regulation of defense response;GO:0032481//positive regulation of type I interferon production;GO:0006353//transcription termination, DNA-dependent;GO:0006354//transcription elongation, DNA-dependent"	gi|281338612|gb|EFB14196.1|/0/hypothetical protein PANDA_017492 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46879099	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha), transcript variant 1 (TFAP2A), mRNA /cds=p(110,1429) /gb=XM_001924566 /gi=194037987 /ug=Ssc.21015 /len=1479"	GO:0031981//nuclear lumen;GO:0005815//microtubule organizing center;GO:0043234//protein complex	GO:0005515//protein binding;GO:0000977;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity	GO:0008544//epidermis development;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0030282//bone mineralization;GO:0070169;GO:0016331//morphogenesis of embryonic epithelium;GO:0048704//embryonic skeletal system morphogenesis;GO:0002064//epithelial cell development	gi|194037988|ref|XP_001924601.1|/0/PREDICTED: transcription factor AP-2-alpha isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55324344	3	0.86	6	1.72	11	3.31	"Sus scrofa mRNA, clone:ADR010082E11, expressed in adrenal gland /gb=AK343514 /gi=288780528 /ug=Ssc.52818 /len=2149"	GO:0042598//vesicular fraction;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0008289//lipid binding;GO:0005506//iron ion binding;GO:0008395//steroid hydroxylase activity	GO:0008202//steroid metabolic process	gi|55742758|ref|NP_999598.1|/0/steroid 21-hydroxylase [Sus scrofa]
gnl|UG|Ssc#S35166608	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:THY010125F01, expressed in thymus /gb=AK239717 /gi=115553131 /ug=Ssc.9309 /len=1411"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0000989//transcription factor binding transcription factor activity;GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity	"GO:0048869;GO:0048731;GO:0006355//regulation of transcription, DNA-dependent;GO:0009952//anterior/posterior pattern formation"	gi|296488788|gb|DAA30901.1|/1.37982e-99/hairy and enhancer of split 6 [Bos taurus]
gnl|UG|Ssc#S58301489	8	2.3	6	1.72	6	1.8	"PREDICTED: Sus scrofa vacuolar protein sorting 41 homolog (S. cerevisiae) (VPS41), mRNA /cds=p(21,2585) /gb=XM_003134906 /gi=311275875 /ug=Ssc.6606 /len=3229"	GO:0005768//endosome;GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0005774//vacuolar membrane;GO:0005626//insoluble fraction;GO:0015630//microtubule cytoskeleton	GO:0046914//transition metal ion binding;GO:0015631//tubulin binding	GO:0016192//vesicle-mediated transport;GO:0015031//protein transport	gi|311275876|ref|XP_003134954.1|/0/PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Sus scrofa]
gnl|UG|Ssc#S58301706	5	1.44	0	0	2	0.6	"PREDICTED: Sus scrofa smoothened homolog (Drosophila) (SMO), mRNA /cds=p(1,2352) /gb=XM_003134680 /gi=311275434 /ug=Ssc.64432 /len=3469"	GO:0031224//intrinsic to membrane;GO:0042995//cell projection;GO:0044424//intracellular part;GO:0044297//cell body	GO:0004888//transmembrane receptor activity;GO:0019904//protein domain specific binding	GO:0048675//axon extension;GO:0031016//pancreas development;GO:0006915//apoptosis;GO:0016055//Wnt receptor signaling pathway;GO:0008284//positive regulation of cell proliferation;GO:0045137//development of primary sexual characteristics;GO:0042692//muscle cell differentiation;GO:0007405//neuroblast proliferation;GO:0043009//chordate embryonic development;GO:0048232//male gamete generation;GO:0001667//ameboidal cell migration;GO:0051100//negative regulation of binding;GO:0007418//ventral midline development;GO:0001503//ossification;GO:0042476//odontogenesis;GO:0021545//cranial nerve development;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0031099;GO:0035239//tube morphogenesis;GO:0006606//protein import into nucleus;GO:0043010//camera-type eye development;GO:0042221//response to chemical stimulus;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0021983//pituitary gland development;GO:0009953//dorsal/ventral pattern formation;GO:0042472//inner ear morphogenesis;GO:0045165//cell fate commitment;GO:0007267//cell-cell signaling;GO:0043113//receptor clustering;GO:0006950//response to stress;GO:0009855//determination of bilateral symmetry;GO:0031647//regulation of protein stability;GO:0008589//regulation of smoothened signaling pathway;GO:0035051//cardiac cell differentiation	gi|311275435|ref|XP_003134728.1|/0/PREDICTED: smoothened homolog [Sus scrofa]
gnl|UG|Ssc#S55324200	10	2.88	6	1.72	15	4.51	"Sus scrofa mRNA, clone:AMP010009D10, expressed in alveolar macrophages /gb=AK343658 /gi=288780672 /ug=Ssc.32152 /len=2365"	GO:0043231//intracellular membrane-bounded organelle	"GO:0043169//cation binding;GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups;GO:0032559"	GO:0006399//tRNA metabolic process	"gi|311258966|ref|XP_003127869.1|/0/PREDICTED: tRNA dimethylallyltransferase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S55326878	5	1.44	0	0	2	0.6	"Sus scrofa mRNA, clone:OVR010095F01, expressed in ovary /gb=AK347773 /gi=288777948 /ug=Ssc.84023 /len=2071"	GO:0044464//cell part	GO:0005099//Ras GTPase activator activity	GO:0032318//regulation of Ras GTPase activity	gi|301777856|ref|XP_002924345.1|/6.86216e-149/PREDICTED: TBC1 domain family member 19-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S29973128	6	1.73	10	2.86	2	0.6	"PDUts1071D03 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1071D03 5', mRNA sequence /clone=PDUts1071D03 /clone_end=5' /gb=CV869786 /gi=84123746 /ug=Ssc.34499 /len=283"	-	-	-	-
gnl|UG|Ssc#S58303512	60	17.27	155	44.31	54	16.23	"PREDICTED: Sus scrofa vacuolar protein sorting-associated protein 29-like, transcript variant 2 (LOC100513380), mRNA /cds=p(78,626) /gb=XM_003132883 /gi=311270626 /ug=Ssc.46684 /len=2570"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0016791//phosphatase activity	GO:0006810//transport;GO:0006796//phosphate metabolic process	"gi|71042152|pdb|1Z2W|A/1.25097e-102/Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+"
gnl|UG|Ssc#S20116244	0	0	0	0	2	0.6	"Sus scrofa neurolysin (metallopeptidase M3 family) (NLN), nuclear gene encoding mitochondrial protein, mRNA /cds=p(158,2272) /gb=NM_214359 /gi=148540173 /ug=Ssc.54751 /len=3819"	GO:0005740//mitochondrial envelope	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding	GO:0019538//protein metabolic process	"gi|47523776|ref|NP_999524.1|/0/neurolysin, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S35167526	49	14.11	40	11.43	95	28.55	"Sus scrofa mRNA, clone:AMP010005H10, expressed in alveolar macrophage /gb=AK230522 /gi=115552213 /ug=Ssc.14532 /len=2791"	GO:0031224//intrinsic to membrane;GO:0000139//Golgi membrane	"GO:0046921//alpha(1,6)-fucosyltransferase activity;GO:0019904//protein domain specific binding"	GO:0019317;GO:0048870//cell motility;GO:0043009//chordate embryonic development;GO:0009311//oligosaccharide metabolic process;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0006487//protein N-linked glycosylation	"gi|47522688|ref|NP_999064.1|/0/alpha-(1,6)-fucosyltransferase [Sus scrofa]"
gnl|UG|Ssc#S35170629	22	6.33	17	4.86	13	3.91	"Sus scrofa mRNA, clone:LNG010042C12, expressed in lung /gb=AK231886 /gi=115549210 /ug=Ssc.23782 /len=1096"	"GO:0000781//chromosome, telomeric region;GO:0043005//neuron projection;GO:0043231//intracellular membrane-bounded organelle;GO:0044297//cell body;GO:0043234//protein complex"	GO:0005515//protein binding;GO:0030371//translation repressor activity;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0003690//double-stranded DNA binding;GO:0016564//transcription repressor activity	"GO:0048731;GO:0006261//DNA-dependent DNA replication;GO:0012501//programmed cell death;GO:0006355//regulation of transcription, DNA-dependent;GO:0008283//cell proliferation;GO:0048869;GO:0000082//G1/S transition of mitotic cell cycle"	gi|297295219|ref|XP_001085737.2|/3.31378e-132/PREDICTED: transcriptional activator protein Pur-alpha-like isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S18384458	0	0	0	0	2	0.6	"935631 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK464611 /gi=40835892 /ug=Ssc.24753 /len=832"	-	-	-	gi|76628373|ref|XP_588285.2|/3.63466e-07/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S58313549	11	3.17	2	0.57	15	4.51	"PREDICTED: Sus scrofa exostosin-2-like (LOC100522362), mRNA /cds=p(1,2196) /gb=XM_003122857 /gi=311247950 /ug=Ssc.21903 /len=2786"	GO:0031224//intrinsic to membrane;GO:0005789//endoplasmic reticulum membrane;GO:0044421//extracellular region part	GO:0015020//glucuronosyltransferase activity;GO:0042802//identical protein binding;GO:0046983//protein dimerization activity;GO:0008375//acetylglucosaminyltransferase activity	GO:0048869;GO:0006041//glucosamine metabolic process;GO:0023052//signaling;GO:0015012//heparan sulfate proteoglycan biosynthetic process;GO:0006023;GO:0001704//formation of primary germ layer	gi|311247951|ref|XP_003122905.1|/0/PREDICTED: exostosin-2-like [Sus scrofa]
gnl|UG|Ssc#S46878290	11	3.17	8	2.29	0	0	"PREDICTED: Sus scrofa adaptor-related protein complex 3, sigma 2 subunit (AP3S2), mRNA /cds=p(151,732) /gb=XM_001927999 /gi=194039655 /ug=Ssc.54742 /len=2275"	GO:0043234//protein complex;GO:0044431//Golgi apparatus part;GO:0012506//vesicle membrane	GO:0022892	GO:0015031//protein transport	"gi|95767721|gb|ABF57327.1|/1.12139e-107/adaptor-related protein complex 3, sigma 2 subunit [Bos taurus]"
gnl|UG|Ssc#S58310783	4	1.15	9	2.57	9	2.7	"PREDICTED: Sus scrofa chromodomain helicase DNA binding protein 7 (CHD7), miscRNA /gb=XR_045625 /gi=311253797 /ug=Ssc.27488 /len=9069"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427	GO:0017111//nucleoside-triphosphatase activity;GO:0003676//nucleic acid binding;GO:0032559	"GO:0006351//transcription, DNA-dependent;GO:0090276;GO:0007507//heart development;GO:0001944//vasculature development;GO:0030326//embryonic limb morphogenesis;GO:0043009//chordate embryonic development;GO:0050954//sensory perception of mechanical stimulus;GO:0001654//eye development;GO:0021675//nerve development;GO:0042471//ear morphogenesis;GO:0046545//development of primary female sexual characteristics;GO:0030098//lymphocyte differentiation;GO:0035264//multicellular organism growth;GO:0003013;GO:0006325//chromatin organization;GO:0008344//adult locomotory behavior"	gi|296480623|gb|DAA22738.1|/0/kismet-like [Bos taurus]
gnl|UG|Ssc#S35172141	5	1.44	0	0	3	0.9	"Sus scrofa mRNA, clone:ITT010043A07, expressed in intestine /gb=AK231352 /gi=115547694 /ug=Ssc.30534 /len=1522"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0004518//nuclease activity	-	"gi|311268675|ref|XP_003132153.1|/0/PREDICTED: nuclease EXOG, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S29469951	8	2.3	6	1.72	32	9.62	"Sus scrofa MET proto-oncogene mRNA, complete cds /cds=p(1,4146) /gb=DQ141604 /gi=73918823 /ug=Ssc.42717 /len=4146"	GO:0005626//insoluble fraction;GO:0016323//basolateral plasma membrane;GO:0016021//integral to membrane	GO:0032559;GO:0004714//transmembrane receptor protein tyrosine kinase activity	GO:0007417//central nervous system development;GO:0014706//striated muscle tissue development;GO:0008283//cell proliferation;GO:0051146//striated muscle cell differentiation;GO:0048513//organ development;GO:0007610//behavior;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006468//protein phosphorylation;GO:0006935//chemotaxis;GO:0060638//mesenchymal-epithelial cell signaling;GO:0016477//cell migration;GO:0000165//MAPKKK cascade	gi|83921645|ref|NP_001033097.1|/0/hepatocyte growth factor receptor precursor [Sus scrofa]
gnl|UG|Ssc#S18547290	1452	418.04	3472	992.47	1552	466.42	"BX915941 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0031.b.21 5prim, mRNA sequence /clone=scan0031.b.21 /clone_end=5' /gb=BX915941 /gi=90229740 /ug=Ssc.17945 /len=885"	-	-	-	gi|45268981|gb|AAS55903.1|/1.30259e-13/60S ribosomal protein L12 [Sus scrofa]
gnl|UG|Ssc#S58304866	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa oxysterol binding protein-like 7 (OSBPL7), mRNA /cds=p(233,2626) /gb=XM_003131540 /gi=311267455 /ug=Ssc.29457 /len=2626"	-	GO:0005488//binding	GO:0051234//establishment of localization;GO:0010876	gi|311267456|ref|XP_003131588.1|/0/PREDICTED: oxysterol-binding protein-related protein 7-like [Sus scrofa]
gnl|UG|Ssc#S35169208	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:LVR010050C11, expressed in liver /gb=AK232461 /gi=115550631 /ug=Ssc.44682 /len=2217"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0016833//oxo-acid-lyase activity;GO:0043169//cation binding	GO:0044237//cellular metabolic process	"gi|149730470|ref|XP_001492342.1|/1.40015e-155/PREDICTED: similar to Citrate lyase subunit beta-like protein, mitochondrial precursor (Citrate lyase beta-like) [Equus caballus]"
gnl|UG|Ssc#S34514106	0	0	2	0.57	0	0	"DB784250 full-length enriched swine cDNA library, adult adrenal gland Sus scrofa cDNA clone ADR010031E10 5', mRNA sequence /clone=ADR010031E10 /clone_end=5' /gb=DB784250 /gi=112758178 /ug=Ssc.32505 /len=893"	-	GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0019941//modification-dependent protein catabolic process	"gi|301783585|ref|XP_002927208.1|/2.97147e-140/PREDICTED: ubiquitin carboxyl-terminal hydrolase 34-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58308512	46	13.24	27	7.72	61	18.33	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase RNF138-like (LOC100515956), mRNA /cds=p(345,1082) /gb=XM_003127882 /gi=311259097 /ug=Ssc.63848 /len=1362"	GO:0044464//cell part	GO:0019900//kinase binding;GO:0046914//transition metal ion binding;GO:0003824//catalytic activity	GO:0007166//cell surface receptor linked signaling pathway	gi|311259098|ref|XP_003127930.1|/4.15656e-146/PREDICTED: e3 ubiquitin-protein ligase RNF138-like [Sus scrofa]
gnl|UG|Ssc#S35172188	62	17.85	30	8.58	43	12.92	"Sus scrofa mRNA, clone:ITT010034B04, expressed in intestine /gb=AK231305 /gi=115547647 /ug=Ssc.5474 /len=2934"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0000377	gi|311247240|ref|XP_003122553.1|/0/PREDICTED: splicing factor 3B subunit 2-like [Sus scrofa]
gnl|UG|Ssc#S58308160	23	6.62	19	5.43	34	10.22	"PREDICTED: Sus scrofa tripartite motif-containing 27 (TRIM27), mRNA /cds=p(85,1626) /gb=XM_003128235 /gi=311259939 /ug=Ssc.14997 /len=2678"	-	-	-	gi|114606124|ref|XP_001140726.1|/0/PREDICTED: ret finger protein [Pan troglodytes]
gnl|UG|Ssc#S35169849	5	1.44	2	0.57	0	0	"Sus scrofa mRNA, clone:LNG010107C01, expressed in lung /gb=AK232225 /gi=115549990 /ug=Ssc.3927 /len=1448"	GO:0000323//lytic vacuole	GO:0004620//phospholipase activity	GO:0048731;GO:0006684//sphingomyelin metabolic process;GO:0023052//signaling	gi|301779225|ref|XP_002925024.1|/0/PREDICTED: sphingomyelin phosphodiesterase-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58310656	24	6.91	5	1.43	8	2.4	"PREDICTED: Sus scrofa integrator complex subunit 3-like (LOC100152330), mRNA /cds=p(678,3800) /gb=XM_003125742 /gi=311254246 /ug=Ssc.2238 /len=4567"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0005488//binding	GO:0006259//DNA metabolic process;GO:0009314//response to radiation;GO:0033554//cellular response to stress;GO:0000075//cell cycle checkpoint;GO:0016073	gi|311254247|ref|XP_003125790.1|/0/PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 3-like [Sus scrofa]
gnl|UG|Ssc#S58304096	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1-like (LOC100521114), mRNA /cds=p(1,1239) /gb=XM_003132302 /gi=311269114 /ug=Ssc.41502 /len=1239"	GO:0016020//membrane	GO:0005488//binding	-	"gi|311269115|ref|XP_003132350.1|/0/PREDICTED: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1-like [Sus scrofa]"
gnl|UG|Ssc#S46878676	7	2.02	12	3.43	23	6.91	"PREDICTED: Sus scrofa UPF0172 protein C14orf122 (FAM158A), mRNA /cds=p(268,888) /gb=XM_001928271 /gi=194038862 /ug=Ssc.12067 /len=946"	-	-	-	gi|194038863|ref|XP_001928306.1|/9.71229e-119/PREDICTED: UPF0172 protein FAM158A [Sus scrofa]
gnl|UG|Ssc#S58312725	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa cadherin-related family member 2 (CDHR2), mRNA /cds=p(1,3930) /gb=XM_003123669 /gi=311249620 /ug=Ssc.64009 /len=3930"	GO:0044459//plasma membrane part;GO:0031224//intrinsic to membrane	GO:0046872//metal ion binding	GO:0016337//cell-cell adhesion;GO:0016049//cell growth	gi|311249621|ref|XP_003123717.1|/0/PREDICTED: cadherin-related family member 2-like [Sus scrofa]
gnl|UG|Ssc#S35170873	48	13.82	57	16.29	88	26.45	"Sus scrofa mRNA, clone:OVRM10073F05, expressed in ovary /gb=AK235369 /gi=115548966 /ug=Ssc.94723 /len=633"	GO:0034399//nuclear periphery	GO:0005488//binding;GO:0016564//transcription repressor activity	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0007599//hemostasis;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|119569304|gb|EAW48919.1|/4.66792e-31/hCG2028158 [Homo sapiens]
gnl|UG|Ssc#S58309164	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa protein phosphatase 5, catalytic subunit (PPP5C), mRNA /cds=p(73,1572) /gb=XM_003127234 /gi=311257764 /ug=Ssc.4363 /len=2028"	GO:0043231//intracellular membrane-bounded organelle;GO:0044297//cell body;GO:0042995//cell projection;GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0060089;GO:0004721//phosphoprotein phosphatase activity	GO:0014072;GO:0051259//protein oligomerization;GO:0000087//M phase of mitotic cell cycle;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0006464//protein modification process	gi|311257765|ref|XP_003127282.1|/0/PREDICTED: serine/threonine-protein phosphatase 5-like [Sus scrofa]
gnl|UG|Ssc#S18355029	0	0	0	0	4	1.2	"900068 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK450502 /gi=40797716 /ug=Ssc.94761 /len=882"	-	-	-	-
gnl|UG|Ssc#S58312917	7	2.02	0	0	2	0.6	"PREDICTED: Sus scrofa SIN3 homolog B, transcription regulator (yeast) (SIN3B), mRNA /cds=p(1,3366) /gb=XM_003123478 /gi=311249228 /ug=Ssc.80958 /len=3634"	GO:0001739//sex chromatin	GO:0005488//binding;GO:0003712//transcription cofactor activity	"GO:0006629//lipid metabolic process;GO:0051726//regulation of cell cycle;GO:0006355//regulation of transcription, DNA-dependent;GO:0014706//striated muscle tissue development"	gi|311249229|ref|XP_003123526.1|/0/PREDICTED: paired amphipathic helix protein Sin3b-like [Sus scrofa]
gnl|UG|Ssc#S35172893	77	22.17	14	4	25	7.51	"Sus scrofa mRNA, clone:UTR010103B04, expressed in uterus /gb=AK240588 /gi=115546942 /ug=Ssc.11016 /len=1019"	GO:0031224//intrinsic to membrane	-	GO:0040007//growth;GO:0008283//cell proliferation	gi|66792914|ref|NP_001019733.1|/4.63195e-69/epithelial membrane protein 3 [Bos taurus]
gnl|UG|Ssc#S6026444	0	0	0	0	0	0	"224418 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BF075410 /gi=10868921 /ti=470929409 /ug=Ssc.2430 /len=537"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0005903//brush border	GO:0005488//binding;GO:0015645//fatty acid ligase activity;GO:0005319//lipid transporter activity	GO:0000038//very long-chain fatty acid metabolic process;GO:0015908//fatty acid transport;GO:0031667//response to nutrient levels;GO:0008544//epidermis development	"gi|115496984|ref|NP_001069135.1|/5.09988e-90/solute carrier family 27 (fatty acid transporter), member 4 [Bos taurus]"
gnl|UG|Ssc#S46879688	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa DNA-dependent protein kinase catalytic subunit-like (LOC100156379), partial mRNA /cds=p(1,10494) /gb=XM_001925309 /gi=311253852 /ug=Ssc.42038 /len=11036"	GO:0031981//nuclear lumen;GO:0043234//protein complex	GO:0005515//protein binding;GO:0003676//nucleic acid binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0032868//response to insulin stimulus;GO:0000726;GO:0007417//central nervous system development;GO:0031647//regulation of protein stability;GO:0016447//somatic recombination of immunoglobulin gene segments;GO:0003006//developmental process involved in reproduction;GO:0009952//anterior/posterior pattern formation;GO:0030183//B cell differentiation;GO:0006468//protein phosphorylation;GO:0002681;GO:0002320//lymphoid progenitor cell differentiation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0006915//apoptosis;GO:0010212//response to ionizing radiation	"gi|311253853|ref|XP_001925344.2|/0/PREDICTED: DNA-dependent protein kinase catalytic subunit-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58310864	117	33.68	45	12.86	107	32.16	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase UBR5-like (LOC100519424), mRNA /cds=p(1,8487) /gb=XM_003125542 /gi=311253529 /ug=Ssc.13158 /len=9454"	GO:0043231//intracellular membrane-bounded organelle;GO:0000267//cell fraction	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0004842//ubiquitin-protein ligase activity	"GO:0000060//protein import into nucleus, translocation;GO:0033554//cellular response to stress;GO:0030518//steroid hormone receptor signaling pathway;GO:0030177//positive regulation of Wnt receptor signaling pathway;GO:0019941//modification-dependent protein catabolic process;GO:0035411//catenin import into nucleus;GO:0016567//protein ubiquitination"	gi|311253530|ref|XP_003125590.1|/0/PREDICTED: e3 ubiquitin-protein ligase UBR5-like [Sus scrofa]
gnl|UG|Ssc#S46879631	10	2.88	7	2	19	5.71	"PREDICTED: Sus scrofa A disintegrin and metalloproteinase with thrombospondin motifs 4-like (LOC100157276), mRNA /cds=p(325,2943) /gb=XM_001927507 /gi=311253961 /ug=Ssc.95423 /len=2943"	GO:0031012//extracellular matrix	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0019899//enzyme binding	GO:0048731;GO:0019538//protein metabolic process	gi|311253962|ref|XP_001927542.2|/0/PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 4-like [Sus scrofa]
gnl|UG|Ssc#S55327759	2	0.58	0	0	2	0.6	"Sus scrofa lecithin cholesterol acyltransferase (LCAT) mRNA, complete cds /cds=p(3,1421) /gb=EU717836 /gi=198401840 /ug=Ssc.2393 /len=1434"	GO:0034358//plasma lipoprotein particle	GO:0008374//O-acyltransferase activity;GO:0034185//apolipoprotein binding;GO:0004091//carboxylesterase activity	GO:0055092//sterol homeostasis;GO:0010038//response to metal ion;GO:0034645//cellular macromolecule biosynthetic process;GO:0034434//sterol esterification;GO:0034370//triglyceride-rich lipoprotein particle remodeling;GO:0046470//phosphatidylcholine metabolic process;GO:0030301//cholesterol transport;GO:0016125//sterol metabolic process;GO:0031960//response to corticosteroid stimulus	gi|258690251|ref|NP_001158328.1|/0/phosphatidylcholine-sterol acyltransferase [Sus scrofa]
gnl|UG|Ssc#S43509639	94	27.06	210	60.03	79	23.74	"Sus scrofa discoidin domain receptor tyrosine kinase 1 (DDR1), mRNA /cds=p(1,2754) /gb=NM_001123105 /gi=178057011 /ug=Ssc.3179 /len=2754"	-	-	-	-
gnl|UG|Ssc#S19549935	4	1.15	15	4.29	6	1.8	"996904 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN166047 /gi=46180477 /ug=Ssc.72575 /len=835"	-	GO:0005488//binding;GO:0004864//protein phosphatase inhibitor activity	GO:0010921;GO:0006073//cellular glucan metabolic process;GO:0007165//signal transduction	gi|301772166|ref|XP_002921498.1|/9.96143e-29/PREDICTED: protein phosphatase inhibitor 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S18383935	11	3.17	23	6.57	11	3.31	"935019 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK464068 /gi=40835349 /ug=Ssc.4818 /len=834"	-	-	-	-
gnl|UG|Ssc#S58302176	9	2.59	0	0	7	2.1	"PREDICTED: Sus scrofa DNA replication complex GINS protein SLD5-like (LOC100520521), mRNA /cds=p(164,835) /gb=XM_003134216 /gi=311274275 /ug=Ssc.9608 /len=2019"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0006261//DNA-dependent DNA replication;GO:0051320	gi|311274276|ref|XP_003134264.1|/1.45192e-103/PREDICTED: DNA replication complex GINS protein SLD5-like [Sus scrofa]
gnl|UG|Ssc#S18356565	0	0	0	0	3	0.9	"907590 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK452006 /gi=40799220 /ug=Ssc.55701 /len=817"	-	GO:0004721//phosphoprotein phosphatase activity	GO:0006470//protein dephosphorylation	gi|75750526|ref|NP_001028747.1|/4.99063e-62/dual specificity phosphatase 28 [Homo sapiens]
gnl|UG|Ssc#S58311674	5	1.44	2	0.57	0	0	"PREDICTED: Sus scrofa coiled-coil domain-containing protein 154-like (LOC100522069), mRNA /cds=p(1,2331) /gb=XM_003124755 /gi=311251776 /ug=Ssc.88114 /len=2331"	-	-	-	gi|311251777|ref|XP_003124803.1|/0/PREDICTED: coiled-coil domain-containing protein 154-like [Sus scrofa]
gnl|UG|Ssc#S21575408	28	8.06	16	4.57	35	10.52	"UMC-pd3end3-001-b03 Endometrium gilt D3 of estrous cycle pd3end Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO988368 /gi=51347642 /ug=Ssc.86560 /len=371"	-	-	-	-
gnl|UG|Ssc#S17518893	0	0	0	0	0	0	"BX673463 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0041.f.12 5prim, mRNA sequence /clone=scac0041.f.12 /clone_end=5' /gb=BX673463 /gi=90241934 /ug=Ssc.54367 /len=824"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0043169//cation binding;GO:0008376//acetylgalactosaminyltransferase activity	GO:0006664//glycolipid metabolic process;GO:0030258//lipid modification	gi|149738176|ref|XP_001499204.1|/2.22015e-49/PREDICTED: similar to forssman synthetase [Equus caballus]
gnl|UG|Ssc#S46877129	4	1.15	0	0	7	2.1	"PREDICTED: Sus scrofa attractin-like 1 (ATRNL1), partial mRNA /cds=p(1,2687) /gb=XM_001929427 /gi=311271874 /ug=Ssc.79989 /len=2687"	-	-	-	"gi|311271875|ref|XP_001929462.2|/0/PREDICTED: attractin-like 1, partial [Sus scrofa]"
gnl|UG|Ssc#S21929816	0	0	2	0.57	10	3.01	"Sus scrofa fibrinogen-like 2 (FGL2), mRNA /cds=p(25,1353) /gb=NM_001005152 /gi=125630297 /ug=Ssc.22050 /len=4265"	GO:0005615//extracellular space;GO:0044464//cell part	GO:0008047//enzyme activator activity;GO:0005515//protein binding;GO:0016787//hydrolase activity	GO:0022414//reproductive process;GO:0051345//positive regulation of hydrolase activity;GO:0023052//signaling	gi|52346216|ref|NP_001005152.1|/0/fibroleukin [Sus scrofa]
gnl|UG|Ssc#S35165363	16	4.61	0	0	2	0.6	"Sus scrofa mRNA, clone:LVRM10133E09, expressed in liver /gb=AK233373 /gi=115554363 /ug=Ssc.6783 /len=2563"	GO:0016021//integral to membrane;GO:0005626//insoluble fraction	GO:0004888//transmembrane receptor activity	GO:0003407//neural retina development;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0022603//regulation of anatomical structure morphogenesis;GO:0007165//signal transduction	gi|311275550|ref|XP_003134788.1|/1.35077e-173/PREDICTED: tetraspanin-12-like [Sus scrofa]
gnl|UG|Ssc#S35169507	0	0	5	1.43	17	5.11	"Sus scrofa mRNA, clone:THY010003H09, expressed in thymus /gb=AK238597 /gi=115550332 /ug=Ssc.48076 /len=1375"	-	-	-	gi|119605596|gb|EAW85190.1|/5.60974e-09/hCG1984275 [Homo sapiens]
gnl|UG|Ssc#S58309629	7	2.02	0	0	6	1.8	"PREDICTED: Sus scrofa condensin-2 complex subunit H2-like, transcript variant 2 (LOC100518196), mRNA /cds=p(144,2006) /gb=XM_003126774 /gi=311256809 /ug=Ssc.44828 /len=2113"	GO:0043229//intracellular organelle	-	GO:0030217//T cell differentiation	gi|311256810|ref|XP_003126822.1|/0/PREDICTED: condensin-2 complex subunit H2-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35173747	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:SPL010057E04, expressed in spleen /gb=AK237530 /gi=115546088 /ug=Ssc.56446 /len=2121"	-	-	-	-
gnl|UG|Ssc#S20939263	19	5.47	72	20.58	30	9.02	"AJ650986 CSEQRAN19 Sus scrofa cDNA clone C0003276_O09, mRNA sequence /clone=C0003276_O09 /gb=AJ650986 /gi=49327831 /ug=Ssc.85679 /len=575"	GO:0044297//cell body;GO:0000267//cell fraction;GO:0044424//intracellular part;GO:0016020//membrane	GO:0046872//metal ion binding;GO:0016841//ammonia-lyase activity;GO:0042802//identical protein binding;GO:0047661;GO:0019904//protein domain specific binding;GO:0016597//amino acid binding;GO:0048037//cofactor binding;GO:0032559	GO:0007417//central nervous system development;GO:0014072;GO:0006090//pyruvate metabolic process;GO:0051260//protein homooligomerization;GO:0009070//serine family amino acid biosynthetic process;GO:0002237//response to molecule of bacterial origin	"gi|148680841|gb|EDL12788.1|/6.72716e-58/mCG1492, isoform CRA_d [Mus musculus]"
gnl|UG|Ssc#S19541911	4	1.15	3	0.86	8	2.4	"946764 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158007 /gi=46172437 /ug=Ssc.33426 /len=855"	GO:0031252//cell leading edge	GO:0005083//small GTPase regulator activity;GO:0008047//enzyme activator activity;GO:0046914//transition metal ion binding	GO:0043087//regulation of GTPase activity;GO:0032012//regulation of ARF protein signal transduction	"gi|297287204|ref|XP_001093762.2|/2.38863e-126/PREDICTED: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 [Macaca mulatta]"
gnl|UG|Ssc#S23696561	6	1.73	6	1.72	4	1.2	"1105130 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN107664 /gi=59782927 /ug=Ssc.26580 /len=899"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|296487772|gb|DAA29885.1|/4.15357e-124/brahma associated protein 170kD-like [Bos taurus]
gnl|UG|Ssc#S46876171	5	1.44	2	0.57	3	0.9	"PREDICTED: Sus scrofa sorting nexin 25 (SNX25), mRNA /cds=p(1,3102) /gb=XM_001926109 /gi=311272314 /ug=Ssc.13295 /len=3591"	-	GO:0005543//phospholipid binding;GO:0060089	GO:0023052//signaling;GO:0009987//cellular process;GO:0006810//transport	gi|311272315|ref|XP_001926144.2|/0/PREDICTED: LOW QUALITY PROTEIN: sorting nexin-25 [Sus scrofa]
gnl|UG|Ssc#S58314390	5	1.44	2	0.57	2	0.6	"PREDICTED: Sus scrofa Golgi-associated plant pathogenesis-related protein 1-like (LOC100515356), mRNA /cds=p(46,510) /gb=XM_003121998 /gi=311246038 /ug=Ssc.2056 /len=1867"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|119578719|gb|EAW58315.1|/5.36967e-89/chromosome 9 open reading frame 19, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S55321297	15	4.32	24	6.86	32	9.62	"Sus scrofa mRNA, clone:ITT010078A06, expressed in small intestine /gb=AK345190 /gi=288783575 /ug=Ssc.24325 /len=1799"	-	GO:0003824//catalytic activity	GO:0008152//metabolic process	gi|73953277|ref|XP_536368.2|/8.91707e-150/PREDICTED: similar to MAWD binding protein (Unknown protein 32 from 2D-page of liver tissue) [Canis familiaris]
gnl|UG|Ssc#S35166035	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:UTR010008C03, expressed in uterus /gb=AK239890 /gi=115553703 /ug=Ssc.5057 /len=2489"	GO:0031981//nuclear lumen;GO:0048500//signal recognition particle	GO:0043021//ribonucleoprotein binding;GO:0003676//nucleic acid binding	GO:0042221//response to chemical stimulus	gi|311266756|ref|XP_003131233.1|/0/PREDICTED: signal recognition particle 68 kDa protein-like [Sus scrofa]
gnl|UG|Ssc#S58308289	11	3.17	16	4.57	6	1.8	"PREDICTED: Sus scrofa nuclear transcription factor Y subunit gamma-like (LOC100525647), mRNA /cds=p(125,1132) /gb=XM_003128107 /gi=311259551 /ug=Ssc.21820 /len=1893"	GO:0005667//transcription factor complex	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0044267//cellular protein metabolic process;GO:0006355//regulation of transcription, DNA-dependent"	gi|311259552|ref|XP_003128155.1|/1.02221e-111/PREDICTED: nuclear transcription factor Y subunit gamma-like [Sus scrofa]
gnl|UG|Ssc#S58308528	7	2.02	10	2.86	20	6.01	"PREDICTED: Sus scrofa protein SSXT-like, transcript variant 2 (LOC100513410), mRNA /cds=p(51,1307) /gb=XM_003127871 /gi=311259063 /ug=Ssc.7676 /len=4620"	GO:0005874//microtubule	GO:0005488//binding;GO:0003713//transcription coactivator activity	GO:0035556//intracellular signal transduction;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007010//cytoskeleton organization;GO:0032989;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0042221//response to chemical stimulus	gi|114672770|ref|XP_512069.2|/7.38023e-120/PREDICTED: similar to SYT variant 1 [Pan troglodytes]
gnl|UG|Ssc#S58305078	14	4.03	3	0.86	10	3.01	"PREDICTED: Sus scrofa Golgi SNAP receptor complex member 2-like (LOC100519332), mRNA /cds=p(56,694) /gb=XM_003131316 /gi=311267025 /ug=Ssc.11692 /len=3283"	GO:0012505//endomembrane system;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity	GO:0048193//Golgi vesicle transport;GO:0016044//cellular membrane organization;GO:0023052//signaling	gi|311267026|ref|XP_003131364.1|/1.49172e-103/PREDICTED: Golgi SNAP receptor complex member 2-like [Sus scrofa]
gnl|UG|Ssc#S58312349	8	2.3	13	3.72	9	2.7	"PREDICTED: Sus scrofa glucosamine-6-phosphate isomerase 1-like (LOC100512094), mRNA /cds=p(348,1217) /gb=XM_003124004 /gi=311250393 /ug=Ssc.2638 /len=2550"	GO:0044424//intracellular part	"GO:0016861//intramolecular oxidoreductase activity, interconverting aldoses and ketoses"	GO:0006041//glucosamine metabolic process;GO:0007338//single fertilization	gi|311250394|ref|XP_003124052.1|/2.07901e-158/PREDICTED: glucosamine-6-phosphate isomerase 1-like [Sus scrofa]
gnl|UG|Ssc#S35168564	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LVR010074B06, expressed in liver /gb=AK232559 /gi=115551126 /ug=Ssc.1761 /len=1238"	GO:0031981//nuclear lumen	GO:0043169//cation binding;GO:0003959//NADPH dehydrogenase activity;GO:0048037//cofactor binding	GO:0008152//metabolic process;GO:0007611//learning or memory	gi|77735599|ref|NP_001029495.1|/5.32088e-113/ribosyldihydronicotinamide dehydrogenase [Bos taurus]
gnl|UG|Ssc#S58308615	0	0	9	2.57	0	0	"PREDICTED: Sus scrofa zinc finger, MYM-type 4 (ZMYM4), partial mRNA /cds=p(287,3817) /gb=XM_003127784 /gi=311258886 /ug=Ssc.30629 /len=3817"	-	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	GO:0032501//multicellular organismal process	"gi|311258887|ref|XP_003127832.1|/0/PREDICTED: zinc finger MYM-type protein 4-like, partial [Sus scrofa]"
gnl|UG|Ssc#S46879736	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa centrosome and spindle pole associated protein 1 (CSPP1), mRNA /cds=p(1,3576) /gb=XM_001926004 /gi=311253754 /ug=Ssc.32837 /len=4623"	GO:0005856//cytoskeleton	-	-	gi|311253755|ref|XP_001926039.2|/0/PREDICTED: centrosome and spindle pole-associated protein 1 [Sus scrofa]
gnl|UG|Ssc#S55293412	12	3.45	2	0.57	13	3.91	"FS671700 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010007C04 5', mRNA sequence /clone=KDN010007C04 /clone_end=5' /gb=FS671700 /gi=288292186 /ug=Ssc.10107 /len=951"	GO:0016021//integral to membrane	GO:0022890//inorganic cation transmembrane transporter activity	GO:0006825//copper ion transport	gi|47523010|ref|NP_999265.1|/7.7909e-92/high affinity copper uptake protein 1 [Sus scrofa]
gnl|UG|Ssc#S55323942	2	0.58	2	0.57	2	0.6	"Sus scrofa mRNA, clone:AMP010026F06, expressed in alveolar macrophages /gb=AK343719 /gi=288780930 /ug=Ssc.83487 /len=3118"	-	-	-	-
gnl|UG|Ssc#S46880316	33	9.5	20	5.72	28	8.41	"PREDICTED: Sus scrofa nuclear undecaprenyl pyrophosphate synthase 1 homolog (LOC100154658), mRNA /cds=p(1,1146) /gb=XM_001928072 /gi=311244041 /ug=Ssc.19348 /len=3825"	GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity;GO:0016740//transferase activity	GO:0048646//anatomical structure formation involved in morphogenesis;GO:0032501//multicellular organismal process;GO:0023052//signaling;GO:0048869	gi|311244042|ref|XP_001928107.2|/0/PREDICTED: LOW QUALITY PROTEIN: nogo-B receptor [Sus scrofa]
gnl|UG|Ssc#S46879007	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa translocation associated membrane protein 2 (TRAM2), mRNA /cds=p(1,1692) /gb=XM_001928827 /gi=311261736 /ug=Ssc.81195 /len=1899"	GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0006810//transport;GO:0009059//macromolecule biosynthetic process	gi|311261737|ref|XP_001928862.2|/0/PREDICTED: translocating chain-associated membrane protein 2 [Sus scrofa]
gnl|UG|Ssc#S26434418	0	0	3	0.86	0	0	"AJ938385 CSEQRAN17 Sus scrofa cDNA clone C0007307l21 3', mRNA sequence /clone=C0007307l21 /clone_end=3' /gb=AJ938385 /gi=72284956 /ug=Ssc.80208 /len=771"	-	-	-	-
gnl|UG|Ssc#S6072267	44	12.67	35	10	32	9.62	"UNL-P-FN-ar-c-03-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-ar-c-03-0-UNL 3', mRNA sequence /clone=UNL-P-FN-ar-c-03-0-UNL /clone_end=3' /gb=BI181448 /gi=14655857 /ug=Ssc.81520 /len=783"	GO:0031981//nuclear lumen;GO:0000785//chromatin;GO:0070603//SWI/SNF-type complex;GO:0044444//cytoplasmic part	GO:0003916//DNA topoisomerase activity;GO:0019901//protein kinase binding;GO:0046983//protein dimerization activity	GO:0006310//DNA recombination;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0007420//brain development;GO:0034645//cellular macromolecule biosynthetic process;GO:0007059//chromosome segregation;GO:0050794//regulation of cellular process;GO:0022403;GO:0016477//cell migration	gi|149729823|ref|XP_001492165.1|/2.03322e-33/PREDICTED: similar to DNA topoisomerase (ATP-hydrolysing) [Equus caballus]
gnl|UG|Ssc#S46877946	2	0.58	2	0.57	3	0.9	"PREDICTED: Sus scrofa zinc finger protein 76 (expressed in testis) (ZNF76), mRNA /cds=p(200,1912) /gb=XM_001927018 /gi=311260283 /ug=Ssc.17931 /len=2656"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006355//regulation of transcription, DNA-dependent"	gi|311260284|ref|XP_001927053.2|/0/PREDICTED: zinc finger protein 76-like [Sus scrofa]
gnl|UG|Ssc#S42528663	6	1.73	6	1.72	12	3.61	"Sus scrofa protein phosphatase 2, regulatory subunit B', delta (PPP2R5D), mRNA /cds=p(260,2068) /gb=NM_001113451 /gi=164664471 /ug=Ssc.54278 /len=3128"	GO:0031981//nuclear lumen;GO:0008287//protein serine/threonine phosphatase complex	GO:0005488//binding;GO:0019888//protein phosphatase regulator activity	GO:0009967//positive regulation of signal transduction;GO:0001932//regulation of protein phosphorylation;GO:0070848//response to growth factor stimulus;GO:0010975//regulation of neuron projection development	"gi|114607473|ref|XP_518483.2|/0/PREDICTED: delta isoform of regulatory subunit B56, protein phosphatase 2A [Pan troglodytes]"
gnl|UG|Ssc#S6056377	0	0	2	0.57	0	0	"MI-P-E6-ahm-b-06-1-UM.s1 MI-P-E6 Sus scrofa cDNA clone MI-P-E6-ahm-b-06-1-UM 3', mRNA sequence /clone=MI-P-E6-ahm-b-06-1-UM /clone_end=3' /gb=BQ599662 /gi=21546388 /ug=Ssc.7873 /len=634"	GO:0043231//intracellular membrane-bounded organelle	"GO:0046914//transition metal ion binding;GO:0016671//oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor"	GO:0044267//cellular protein metabolic process	"gi|296212260|ref|XP_002752755.1|/1.45876e-72/PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like [Callithrix jacchus]"
gnl|UG|Ssc#S58308025	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100512842 (LOC100512842), partial mRNA /cds=p(1,1493) /gb=XM_003128373 /gi=311260346 /ug=Ssc.93608 /len=1493"	-	GO:0005488//binding	-	"gi|311260347|ref|XP_003128421.1|/0/PREDICTED: hypothetical protein LOC100512842, partial [Sus scrofa]"
gnl|UG|Ssc#S21549633	4	1.15	3	0.86	0	0	"UMC-peov3-011-h04 Oviduct from a gilt in estrus peov Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO941953 /gi=51308712 /ug=Ssc.40615 /len=380"	-	-	-	-
gnl|UG|Ssc#S23213097	7	2.02	2	0.57	9	2.7	"Sus scrofa clone Clu_42793.scr.msk.p1.Contig1, mRNA sequence /gb=AY609911 /gi=52351481 /ug=Ssc.20325 /len=3425"	GO:0031224//intrinsic to membrane;GO:0005903//brush border;GO:0044439	GO:0005515//protein binding	GO:0007031//peroxisome organization;GO:0006605//protein targeting	gi|194035837|ref|XP_001928904.1|/6.72487e-123/PREDICTED: peroxisomal biogenesis factor 19 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58313268	14	4.03	4	1.14	13	3.91	"PREDICTED: Sus scrofa cdc42-interacting protein 4-like, transcript variant 2 (LOC100520177), mRNA /cds=p(88,1896) /gb=XM_003123127 /gi=311248517 /ug=Ssc.25260 /len=2171"	GO:0000323//lytic vacuole;GO:0044459//plasma membrane part;GO:0043232	GO:0008047//enzyme activator activity;GO:0004871//signal transducer activity;GO:0005515//protein binding	GO:0016192//vesicle-mediated transport;GO:0035556//intracellular signal transduction;GO:0007010//cytoskeleton organization;GO:0009966//regulation of signal transduction	gi|311248518|ref|XP_003123175.1|/0/PREDICTED: cdc42-interacting protein 4-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S17515838	123	35.41	481	137.49	101	30.35	"BX670407 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0033.h.09 3prim, mRNA sequence /clone=scac0033.h.09 /clone_end=3' /gb=BX670407 /gi=90241865 /ug=Ssc.5761 /len=1035"	GO:0034399//nuclear periphery;GO:0005839//proteasome core complex;GO:0030016//myofibril;GO:0030529//ribonucleoprotein complex	GO:0004175//endopeptidase activity;GO:0032555;GO:0003676//nucleic acid binding;GO:0008134//transcription factor binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051091//positive regulation of transcription factor activity;GO:0051320;GO:0007050//cell cycle arrest;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0031347//regulation of defense response"	gi|297694931|ref|XP_002824717.1|/7.23267e-110/PREDICTED: proteasome subunit alpha type-6-like [Pongo abelii]
gnl|UG|Ssc#S58304141	0	0	0	0	0	0	"PREDICTED: Sus scrofa NIMA (never in mitosis gene a)-related kinase 4 (NEK4), mRNA /cds=p(1,2232) /gb=XM_003132258 /gi=311269006 /ug=Ssc.4071 /len=3335"	GO:0031981//nuclear lumen	GO:0004672//protein kinase activity;GO:0000166//nucleotide binding	GO:0007049//cell cycle	gi|311269007|ref|XP_003132306.1|/0/PREDICTED: serine/threonine-protein kinase Nek4-like [Sus scrofa]
gnl|UG|Ssc#S58303602	116	33.4	133	38.02	138	41.47	"PREDICTED: Sus scrofa v-type proton ATPase subunit B, brain isoform-like (LOC100523998), mRNA /cds=p(53,1588) /gb=XM_003132793 /gi=311270289 /ug=Ssc.7378 /len=3436"	GO:0048770;GO:0031224//intrinsic to membrane;GO:0033176	GO:0019829//cation-transporting ATPase activity;GO:0015078//hydrogen ion transmembrane transporter activity;GO:0032559	"GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0015031//protein transport;GO:0009207;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0015986//ATP synthesis coupled proton transport;GO:0051452//intracellular pH reduction;GO:0006875//cellular metal ion homeostasis"	"gi|109085770|ref|XP_001100869.1|/0/PREDICTED: v-type proton ATPase subunit B, brain isoform [Macaca mulatta]"
gnl|UG|Ssc#S18354217	5	1.44	0	0	2	0.6	"893245 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK449658 /gi=40796872 /ug=Ssc.10191 /len=785"	-	-	-	gi|297668324|ref|XP_002812395.1|/1.26763e-51/PREDICTED: protein FAM168B-like [Pongo abelii]
gnl|UG|Ssc#S58303876	6	1.73	9	2.57	8	2.4	"PREDICTED: Sus scrofa programmed cell death protein 10-like (LOC100517005), mRNA /cds=p(261,899) /gb=XM_003132520 /gi=311269618 /ug=Ssc.9735 /len=1876"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0012505//endomembrane system;GO:0016020//membrane	GO:0042802//identical protein binding	GO:0006915//apoptosis;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0008283//cell proliferation;GO:0043405//regulation of MAP kinase activity	gi|31560391|ref|NP_062719.2|/1.19283e-112/programmed cell death protein 10 [Mus musculus]
gnl|UG|Ssc#S35167369	17	4.89	8	2.29	3	0.9	"Sus scrofa mRNA, clone:OVRM10186D05, expressed in ovary /gb=AK236375 /gi=115552370 /ug=Ssc.5999 /len=1274"	GO:0016021//integral to membrane;GO:0019866//organelle inner membrane;GO:0005819//spindle;GO:0005759//mitochondrial matrix	GO:0005488//binding;GO:0005345//purine base transmembrane transporter activity	GO:0006863//purine base transport;GO:0051704;GO:0030073//insulin secretion;GO:0015980//energy derivation by oxidation of organic compounds	gi|32189334|ref|NP_777084.1|/6.46416e-162/ADP/ATP translocase 2 [Bos taurus]
gnl|UG|Ssc#S58308978	9	2.59	13	3.72	3	0.9	"PREDICTED: Sus scrofa u4/U6 small nuclear ribonucleoprotein Prp31-like (LOC100520791), mRNA /cds=p(75,1574) /gb=XM_003127413 /gi=311258143 /ug=Ssc.20228 /len=1839"	GO:0030532//small nuclear ribonucleoprotein complex;GO:0035097//histone methyltransferase complex;GO:0005681//spliceosomal complex;GO:0016604//nuclear body	GO:0003676//nucleic acid binding;GO:0043021//ribonucleoprotein binding	GO:0000387//spliceosomal snRNP assembly	gi|311258144|ref|XP_003127461.1|/0/PREDICTED: LOW QUALITY PROTEIN: u4/U6 small nuclear ribonucleoprotein Prp31-like [Sus scrofa]
gnl|UG|Ssc#S35167612	13	3.74	5	1.43	13	3.91	"Sus scrofa mRNA, clone:THY010092F09, expressed in thymus /gb=AK239320 /gi=115552127 /ug=Ssc.48457 /len=2873"	GO:0005856//cytoskeleton;GO:0000793//condensed chromosome;GO:0043231//intracellular membrane-bounded organelle	-	GO:0000070//mitotic sister chromatid segregation	gi|301782219|ref|XP_002926531.1|/0/PREDICTED: condensin complex subunit 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S26435001	3	0.86	6	1.72	0	0	"AJ939099 CSEQRAN17 Sus scrofa cDNA clone C0007318p10 3', mRNA sequence /clone=C0007318p10 /clone_end=3' /gb=AJ939099 /gi=72286126 /ug=Ssc.19142 /len=800"	GO:0016604//nuclear body;GO:0016585//chromatin remodeling complex	GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0019899//enzyme binding	GO:0006396//RNA processing;GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|301769723|ref|XP_002920279.1|/2.30498e-72/PREDICTED: corepressor interacting with RBPJ 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46880715	45	12.96	5	1.43	22	6.61	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase NEDD4-like (LOC100154192), mRNA /cds=p(1,1215) /gb=XM_001926056 /gi=311245276 /ug=Ssc.54780 /len=1649"	GO:0044424//intracellular part	GO:0005488//binding;GO:0008200//ion channel inhibitor activity;GO:0019787//small conjugating protein ligase activity	GO:0010035//response to inorganic substance;GO:0016567//protein ubiquitination;GO:0002028//regulation of sodium ion transport	gi|311245277|ref|XP_001926091.2|/0/PREDICTED: e3 ubiquitin-protein ligase NEDD4-like [Sus scrofa]
gnl|UG|Ssc#S35164281	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVR010001A12, expressed in ovary /gb=AK234058 /gi=115555445 /ug=Ssc.55705 /len=1113"	GO:0043231//intracellular membrane-bounded organelle	GO:0043566//structure-specific DNA binding	GO:0010467//gene expression	gi|56550053|ref|NP_003654.3|/9.88286e-92/CGG triplet repeat-binding protein 1 [Homo sapiens]
gnl|UG|Ssc#S6000306	0	0	3	0.86	0	0	"141633 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BE234504 /gi=9019222 /ti=448047204 /ug=Ssc.78701 /len=583"	GO:0005783//endoplasmic reticulum	GO:0017110//nucleoside-diphosphatase activity	GO:0006007//glucose catabolic process;GO:0040007//growth;GO:0009205;GO:0009966//regulation of signal transduction;GO:0006486//protein glycosylation;GO:0006458//'de novo' protein folding	gi|194038540|ref|XP_001929175.1|/6.56915e-10/PREDICTED: ectonucleoside triphosphate diphosphohydrolase 5 [Sus scrofa]
gnl|UG|Ssc#S58307931	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa IQ motif containing GTPase activating protein 1 (IQGAP1), mRNA /cds=p(12,4826) /gb=XM_003128465 /gi=311260676 /ug=Ssc.24255 /len=7011"	GO:0031981//nuclear lumen;GO:0032991//macromolecular complex;GO:0015629//actin cytoskeleton;GO:0042995//cell projection;GO:0030054//cell junction	GO:0005083//small GTPase regulator activity;GO:0008047//enzyme activator activity;GO:0019902//phosphatase binding;GO:0017048//Rho GTPase binding;GO:0004857//enzyme inhibitor activity	GO:0015980//energy derivation by oxidation of organic compounds;GO:0032318//regulation of Ras GTPase activity;GO:0030073//insulin secretion	gi|311260677|ref|XP_003128513.1|/0/PREDICTED: LOW QUALITY PROTEIN: IQ motif containing GTPase activating protein 1 [Sus scrofa]
gnl|UG|Ssc#S23693266	114	32.82	80	22.87	99	29.75	"1100152 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN104365 /gi=59778350 /ug=Ssc.8383 /len=770"	-	-	-	-
gnl|UG|Ssc#S23213302	5	1.44	10	2.86	5	1.5	"Sus scrofa clone Clu_268408.scr.msk.p1.Contig2, mRNA sequence /gb=AY609706 /gi=52351274 /ug=Ssc.53789 /len=1522"	GO:0044464//cell part	GO:0032561	GO:0035556//intracellular signal transduction	gi|114581234|ref|XP_001136344.1|/3.13026e-87/PREDICTED: similar to ARF-like protein 5 [Pan troglodytes]
gnl|UG|Ssc#S58310220	9	2.59	2	0.57	0	0	"PREDICTED: Sus scrofa cysteine sulfinic acid decarboxylase (CSAD), mRNA /cds=p(1,1545) /gb=XM_003126183 /gi=311255427 /ug=Ssc.48645 /len=2492"	-	GO:0016831//carboxy-lyase activity;GO:0048037//cofactor binding	GO:0009309//amine biosynthetic process;GO:0019448//L-cysteine catabolic process	gi|311255428|ref|XP_003126231.1|/0/PREDICTED: cysteine sulfinic acid decarboxylase-like [Sus scrofa]
gnl|UG|Ssc#S55318321	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:MLN010096F02, expressed in mesenteric lymph nodes /gb=AK347045 /gi=288786563 /ug=Ssc.85409 /len=1048"	GO:0044444//cytoplasmic part;GO:0031981//nuclear lumen	"GO:0050661//NADP binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"	GO:0042374	gi|311270205|ref|XP_003132810.1|/5.23108e-156/PREDICTED: carbonyl reductase [NADPH] 3-like [Sus scrofa]
gnl|UG|Ssc#S58304625	6	1.73	2	0.57	2	0.6	"PREDICTED: Sus scrofa transcription elongation factor SPT6-like (LOC100517854), mRNA /cds=p(1,2475) /gb=XM_003131788 /gi=311267960 /ug=Ssc.43672 /len=3071"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0016787//hydrolase activity	"GO:0016568//chromatin modification;GO:0006355//regulation of transcription, DNA-dependent"	gi|311267961|ref|XP_003131836.1|/0/PREDICTED: transcription elongation factor SPT6-like [Sus scrofa]
gnl|UG|Ssc#S58308565	69	19.87	11	3.14	72	21.64	"PREDICTED: Sus scrofa ralA binding protein 1 (RALBP1), mRNA /cds=p(176,2095) /gb=XM_003127830 /gi=311258987 /ug=Ssc.24198 /len=3473"	GO:0016020//membrane;GO:0005624//membrane fraction;GO:0044444//cytoplasmic part	"GO:0005100//Rho GTPase activator activity;GO:0017048//Rho GTPase binding;GO:0042623//ATPase activity, coupled"	GO:0000278//mitotic cell cycle;GO:0042221//response to chemical stimulus;GO:0008285//negative regulation of cell proliferation;GO:0000279//M phase;GO:0016192//vesicle-mediated transport;GO:0032321//positive regulation of Rho GTPase activity	gi|311258988|ref|XP_003127878.1|/0/PREDICTED: ralA-binding protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35168678	7	2.02	2	0.57	13	3.91	"Sus scrofa mRNA, clone:THY010040A12, expressed in thymus /gb=AK238873 /gi=115551012 /ug=Ssc.5990 /len=2822"	GO:0080008//CUL4 RING ubiquitin ligase complex	GO:0005488//binding;GO:0004871//signal transducer activity	GO:0019941//modification-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation;GO:0023052//signaling	gi|281346050|gb|EFB21634.1|/0/hypothetical protein PANDA_004524 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58305683	15	4.32	11	3.14	10	3.01	"PREDICTED: Sus scrofa kinesin family member 5B (KIF5B), mRNA /cds=p(1,3552) /gb=XM_003130715 /gi=311265663 /ug=Ssc.41350 /len=3789"	GO:0005875//microtubule associated complex;GO:0042995//cell projection;GO:0044444//cytoplasmic part	GO:0003774//motor activity;GO:0015631//tubulin binding;GO:0032559	GO:0051648//vesicle localization;GO:0007017//microtubule-based process;GO:0046907//intracellular transport;GO:0032988	gi|311265664|ref|XP_003130763.1|/0/PREDICTED: LOW QUALITY PROTEIN: kinesin-1 heavy chain [Sus scrofa]
gnl|UG|Ssc#S35168199	24	6.91	7	2	14	4.21	"Sus scrofa mRNA, clone:OVRM10160B04, expressed in ovary /gb=AK236169 /gi=115551491 /ug=Ssc.18551 /len=1424"	GO:0043231//intracellular membrane-bounded organelle;GO:0000267//cell fraction	GO:0030291//protein serine/threonine kinase inhibitor activity;GO:0005488//binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0033673//negative regulation of kinase activity;GO:0023052//signaling;GO:0006606//protein import into nucleus	gi|297707158|ref|XP_002830381.1|/7.32189e-24/PREDICTED: cAMP-dependent protein kinase inhibitor gamma-like isoform 1 [Pongo abelii]
gnl|UG|Ssc#S58311668	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa n-acetylglucosamine-1-phosphotransferase subunit gamma-like (LOC100522604), mRNA /cds=p(1,810) /gb=XM_003124757 /gi=311251789 /ug=Ssc.4571 /len=1872"	GO:0043231//intracellular membrane-bounded organelle;GO:0012505//endomembrane system;GO:0042598//vesicular fraction	"GO:0005515//protein binding;GO:0016780//phosphotransferase activity, for other substituted phosphate groups"	GO:0006491//N-glycan processing	gi|311251790|ref|XP_003124805.1|/8.43028e-159/PREDICTED: n-acetylglucosamine-1-phosphotransferase subunit gamma-like [Sus scrofa]
gnl|UG|Ssc#S39919877	0	0	0	0	2	0.6	"Sus scrofa cyclin-dependent kinase 5 regulatory subunit 1 (CDK5R1) mRNA, complete cds /cds=p(4,927) /gb=EU041702 /gi=161579458 /ug=Ssc.32873 /len=1022"	GO:0030427//site of polarized growth;GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0044297//cell body;GO:0030425//dendrite;GO:0043232;GO:0000307//cyclin-dependent protein kinase holoenzyme complex;GO:0044444//cytoplasmic part;GO:0045202//synapse	GO:0050839//cell adhesion molecule binding;GO:0046872//metal ion binding;GO:0004674//protein serine/threonine kinase activity;GO:0019900//kinase binding;GO:0043539//protein serine/threonine kinase activator activity	GO:0007417//central nervous system development;GO:0007409//axonogenesis;GO:0016337//cell-cell adhesion;GO:0050767//regulation of neurogenesis;GO:0051726//regulation of cell cycle;GO:0045860//positive regulation of protein kinase activity;GO:0006935//chemotaxis;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0048588//developmental cell growth;GO:0007215//glutamate signaling pathway;GO:0016477//cell migration;GO:0043065//positive regulation of apoptosis	gi|162287176|ref|NP_001095286.2|/2.18088e-151/cyclin-dependent kinase 5 activator 1 [Sus scrofa]
gnl|UG|Ssc#S58303537	193	55.57	83	23.73	117	35.16	"PREDICTED: Sus scrofa splicing factor, suppressor of white-apricot homolog (Drosophila) (SFSWAP), mRNA /cds=p(137,2971) /gb=XM_003132856 /gi=311270532 /ug=Ssc.5416 /len=3264"	-	GO:0005488//binding	GO:0000245//spliceosome assembly	"gi|311270533|ref|XP_003132904.1|/0/PREDICTED: splicing factor, arginine/serine-rich 8-like [Sus scrofa]"
gnl|UG|Ssc#S55326137	9	2.59	13	3.72	9	2.7	"Sus scrofa mRNA, clone:OVRM10188C05, expressed in ovary /gb=AK348514 /gi=288778689 /ug=Ssc.15166 /len=3414"	-	-	-	-
gnl|UG|Ssc#S43678670	5	1.44	0	0	5	1.5	"Sus scrofa SMAP1L mRNA for stromal membrane-associated protein 1-like, complete cds /cds=p(421,1710) /gb=AB364501 /gi=183223972 /ug=Ssc.3072 /len=2940"	-	-	-	-
gnl|UG|Ssc#S46876192	0	0	3	0.86	2	0.6	"PREDICTED: Sus scrofa oligonucleotide/oligosaccharide-binding fold containing 2A (OBFC2A), mRNA /cds=p(502,1116) /gb=XM_001927891 /gi=311272812 /ug=Ssc.18304 /len=2312"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0043566//structure-specific DNA binding	GO:0009314//response to radiation;GO:0000075//cell cycle checkpoint;GO:0000725//recombinational repair	gi|194044013|ref|XP_001927926.1|/1.03146e-116/PREDICTED: SOSS complex subunit B2 [Sus scrofa]
gnl|UG|Ssc#S58310100	3	0.86	5	1.43	0	0	"PREDICTED: Sus scrofa prolow-density lipoprotein receptor-related protein 1-like (LOC100519255), mRNA /cds=p(1,2007) /gb=XM_003126323 /gi=311255748 /ug=Ssc.87539 /len=2007"	GO:0043005//neuron projection;GO:0005626//insoluble fraction;GO:0030135//coated vesicle;GO:0044297//cell body;GO:0016021//integral to membrane	GO:0046872//metal ion binding;GO:0034185//apolipoprotein binding	GO:0006909//phagocytosis;GO:0044260;GO:0016055//Wnt receptor signaling pathway;GO:0051050//positive regulation of transport;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0010874//regulation of cholesterol efflux;GO:0045767//regulation of anti-apoptosis;GO:0010517//regulation of phospholipase activity;GO:0032502//developmental process	gi|311255749|ref|XP_003126371.1|/0/PREDICTED: prolow-density lipoprotein receptor-related protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58312550	7	2.02	27	7.72	5	1.5	"PREDICTED: Sus scrofa protein fem-1 homolog C-like (LOC100520949), mRNA /cds=p(1,1329) /gb=XM_003123851 /gi=311249980 /ug=Ssc.93942 /len=1601"	GO:0044424//intracellular part	-	-	gi|311249981|ref|XP_003123899.1|/0/PREDICTED: protein fem-1 homolog C-like [Sus scrofa]
gnl|UG|Ssc#S58304148	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa protein phosphatase 1M-like (LOC100524901), mRNA /cds=p(1,1392) /gb=XM_003132254 /gi=311268988 /ug=Ssc.9662 /len=2128"	-	-	-	gi|311268989|ref|XP_003132302.1|/0/PREDICTED: protein phosphatase 1M-like [Sus scrofa]
gnl|UG|Ssc#S35167487	2	0.58	3	0.86	0	0	"Sus scrofa mRNA, clone:AMP010010B04, expressed in alveolar macrophage /gb=AK230561 /gi=115552252 /ug=Ssc.7018 /len=2306"	GO:0044444//cytoplasmic part;GO:0005634//nucleus;GO:0044446//intracellular organelle part	-	-	gi|151555899|gb|AAI49600.1|/1.72654e-55/TGOLN2 protein [Bos taurus]
gnl|UG|Ssc#S55324611	16	4.61	14	4	9	2.7	"Sus scrofa mRNA, clone:ADR010069E08, expressed in adrenal gland /gb=AK343445 /gi=288780261 /ug=Ssc.4715 /len=2070"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane	"GO:0016628//oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"	GO:0006694//steroid biosynthetic process;GO:0008203//cholesterol metabolic process	gi|311247345|ref|XP_003122590.1|/9.65964e-127/PREDICTED: delta(14)-sterol reductase-like [Sus scrofa]
gnl|UG|Ssc#S58306582	0	0	0	0	0	0	"PREDICTED: Sus scrofa protein DDI1 homolog 1-like, transcript variant 2 (LOC100522388), mRNA /cds=p(193,1332) /gb=XM_003129811 /gi=311263822 /ug=Ssc.34041 /len=1781"	-	-	-	gi|311263823|ref|XP_003129859.1|/2.08527e-167/PREDICTED: protein DDI1 homolog 1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S46879149	3	0.86	0	0	5	1.5	"PREDICTED: Sus scrofa Ubiquitin isopeptidase T (LOC100155342), mRNA /cds=p(23,2032) /gb=XM_001925784 /gi=311256260 /ug=Ssc.18581 /len=2572"	GO:0000323//lytic vacuole	GO:0016790//thiolester hydrolase activity;GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0008238//exopeptidase activity	GO:0019941//modification-dependent protein catabolic process;GO:0031331;GO:0016579//protein deubiquitination	gi|311256261|ref|XP_001925819.2|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 [Sus scrofa]
gnl|UG|Ssc#S58314199	33	9.5	4	1.14	20	6.01	"PREDICTED: Sus scrofa spectrin alpha non-erythrocytic 1 (LOC100049693), mRNA /cds=p(104,7537) /gb=XM_003122201 /gi=311246556 /ug=Ssc.3076 /len=7893"	-	-	-	-
gnl|UG|Ssc#S46877751	45	12.96	57	16.29	73	21.94	"PREDICTED: Sus scrofa ankyrin repeat domain 28 (ANKRD28), mRNA /cds=p(1,3261) /gb=XM_001927213 /gi=311268565 /ug=Ssc.20783 /len=6230"	-	GO:0005488//binding	-	gi|194040779|ref|XP_001927248.1|/0/PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A [Sus scrofa]
gnl|UG|Ssc#S6082526	0	0	5	1.43	0	0	"MI-P-H5-aee-e-03-1-UM.s1.ab1 MI-P-H5 Sus scrofa cDNA clone MI-P-H5-aee-e-03-1-UM.ab1 3', mRNA sequence /clone=MI-P-H5-aee-e-03-1-UM.ab1 /clone_end=3' /gb=BI404804 /gi=15184017 /ug=Ssc.13288 /len=556"	GO:0016021//integral to membrane	GO:0019838//growth factor binding;GO:0005017//platelet-derived growth factor receptor activity;GO:0070851//growth factor receptor binding;GO:0042802//identical protein binding;GO:0032559;GO:0019900//kinase binding	GO:0009611//response to wounding;GO:0006275//regulation of DNA replication;GO:0008202//steroid metabolic process;GO:0046546//development of primary male sexual characteristics;GO:0042476//odontogenesis;GO:0043627//response to estrogen stimulus;GO:0008406//gonad development;GO:0022602//ovulation cycle process;GO:0043009//chordate embryonic development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0008284//positive regulation of cell proliferation;GO:0006468//protein phosphorylation;GO:0030323//respiratory tube development;GO:0022008//neurogenesis;GO:0035270//endocrine system development;GO:0043062//extracellular structure organization;GO:0016477//cell migration	gi|51594358|gb|AAS91495.2|/5.26358e-96/platelet-derived growth factor receptor alpha [Canis lupus familiaris]
gnl|UG|Ssc#S35164525	3	0.86	2	0.57	0	0	"Sus scrofa mRNA, clone:MLN010037C04, expressed in mesenteric lymph node /gb=AK233816 /gi=115555201 /ug=Ssc.5740 /len=1061"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0019899//enzyme binding	GO:0006950//response to stress;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process	gi|123858764|ref|NP_001073716.1|/2.82737e-151/JNK1/MAPK8-associated membrane protein [Bos taurus]
gnl|UG|Ssc#S6091448	5	1.44	7	2	4	1.2	"Pig mRNA for the plasma membrane Ca2+ pump (PMCA1b) /cds=p(416,4078) /gb=X53456 /gi=2060 /ug=Ssc.80906 /len=4236"	GO:0016021//integral to membrane;GO:0044459//plasma membrane part	GO:0043169//cation binding;GO:0046873//metal ion transmembrane transporter activity;GO:0019829//cation-transporting ATPase activity;GO:0019904//protein domain specific binding;GO:0032559	GO:0001775//cell activation;GO:0009206;GO:0008285//negative regulation of cell proliferation;GO:0006816//calcium ion transport;GO:0007599//hemostasis	gi|47523762|ref|NP_999517.1|/0/plasma membrane calcium-transporting ATPase 1 [Sus scrofa]
gnl|UG|Ssc#S49953829	0	0	0	0	0	0	"Sus scrofa ER lipid raft-associated 2 isoform 2 (ERLIN2) mRNA, complete cds /cds=p(359,1378) /gb=FJ436386 /gi=217314886 /ug=Ssc.5503 /len=1729"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0005488//binding;GO:0016788//hydrolase activity, acting on ester bonds"	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process	gi|219521982|ref|NP_001137178.1|/3.6592e-169/erlin-2 [Sus scrofa]
gnl|UG|Ssc#S55318715	10	2.88	12	3.43	5	1.5	"Sus scrofa mRNA, clone:MLN010053F04, expressed in mesenteric lymph nodes /gb=AK346777 /gi=288786169 /ug=Ssc.55810 /len=889"	GO:0043234//protein complex	GO:0005488//binding	-	gi|57096799|ref|XP_532668.1|/1.07743e-92/PREDICTED: similar to Protein AD-016 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S20939562	0	0	0	0	2	0.6	"AJ651285 CSEQRAN19 Sus scrofa cDNA clone C0003277_O05, mRNA sequence /clone=C0003277_O05 /gb=AJ651285 /gi=49333730 /ug=Ssc.85695 /len=558"	GO:0044429//mitochondrial part	"GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0000166//nucleotide binding;GO:0048037//cofactor binding"	GO:0006007//glucose catabolic process;GO:0009081//branched chain family amino acid metabolic process;GO:0009063//cellular amino acid catabolic process	gi|556389|gb|AAA50312.1|/2.28164e-94/3-hydroxyisobutyrate dehydrogenase [Rattus norvegicus]
gnl|UG|Ssc#S58304572	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa reticulon-4 receptor-like 1-like (LOC100511223), mRNA /cds=p(1,1707) /gb=XM_003131829 /gi=311268068 /ug=Ssc.43729 /len=2558"	GO:0009986//cell surface;GO:0031225//anchored to membrane	GO:0005488//binding;GO:0004871//signal transducer activity	GO:0007409//axonogenesis;GO:0007165//signal transduction	gi|311268069|ref|XP_003131877.1|/0/PREDICTED: reticulon-4 receptor-like 1-like [Sus scrofa]
gnl|UG|Ssc#S20936214	48	13.82	33	9.43	22	6.61	"AJ647937 CSEQRAN19 Sus scrofa cDNA clone C0003263_B23, mRNA sequence /clone=C0003263_B23 /gb=AJ647937 /gi=49324782 /ug=Ssc.85539 /len=532"	GO:0005643//nuclear pore;GO:0044444//cytoplasmic part;GO:0000777//condensed chromosome kinetochore	GO:0005488//binding;GO:0005215//transporter activity	GO:0007498//mesoderm development;GO:0044238//primary metabolic process;GO:0015758//glucose transport;GO:0006405//RNA export from nucleus;GO:0007067//mitosis;GO:0006997//nucleus organization	"gi|149043184|gb|EDL96716.1|/4.23174e-97/rCG50939, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S35173629	0	0	4	1.14	2	0.6	"Sus scrofa mRNA, clone:UTR010071E06, expressed in uterus /gb=AK240444 /gi=115546206 /ug=Ssc.55186 /len=2278"	GO:0044421//extracellular region part	GO:0019842//vitamin binding	GO:0006767//water-soluble vitamin metabolic process;GO:0000041//transition metal ion transport;GO:0051180//vitamin transport	gi|194043238|ref|XP_001929348.1|/0/PREDICTED: transcobalamin-2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58313844	3	0.86	6	1.72	3	0.9	"PREDICTED: Sus scrofa zinc finger protein-like 1-like (LOC100515072), mRNA /cds=p(166,1104) /gb=XM_003122545 /gi=311247348 /ug=Ssc.49449 /len=1364"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0006810//transport	gi|311247349|ref|XP_003122593.1|/4.04791e-133/PREDICTED: zinc finger protein-like 1-like [Sus scrofa]
gnl|UG|Ssc#S42538980	2	0.58	0	0	2	0.6	"Sus scrofa TH1-like (Drosophila) (TH1L), mRNA /cds=p(36,1811) /gb=NM_001113698 /gi=165973431 /ug=Ssc.12022 /len=2257"	GO:0031981//nuclear lumen	GO:0005488//binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|165973432|ref|NP_001107170.1|/0/negative elongation factor D [Sus scrofa]
gnl|UG|Ssc#S58312444	423	121.78	406	116.05	303	91.06	"PREDICTED: Sus scrofa heterogeneous nuclear ribonucleoprotein A0-like (LOC100519826), mRNA /cds=p(280,1188) /gb=XM_003123970 /gi=311250198 /ug=Ssc.8009 /len=2764"	GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0000377	gi|126290015|ref|XP_001367952.1|/1.66292e-92/PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A0 [Monodelphis domestica]
gnl|UG|Ssc#S58302859	5	1.44	4	1.14	6	1.8	"PREDICTED: Sus scrofa WD repeat domain 75 (WDR75), mRNA /cds=p(8,2503) /gb=XM_003133536 /gi=311272778 /ug=Ssc.13404 /len=3180"	GO:0031981//nuclear lumen	-	-	gi|311272779|ref|XP_003133584.1|/0/PREDICTED: WD repeat-containing protein 75-like [Sus scrofa]
gnl|UG|Ssc#S29976364	9	2.59	18	5.15	16	4.81	"PDUts1109F06 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1109F06 5' similar to homologue to ref|XM_058661.7| Homo sapiens chromosome 14 open reading frame 35 (C14orf35), mRNA, mRNA sequence /clone=PDUts1109F06 /clone_end=5' /gb=CV873022 /gi=84126982 /ug=Ssc.88227 /len=664"	GO:0044424//intracellular part	GO:0034212//peptide N-acetyltransferase activity	-	"gi|301754423|ref|XP_002913083.1|/1.52064e-38/PREDICTED: LOW QUALITY PROTEIN: n-alpha-acetyltransferase 30, NatC catalytic subunit-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S46880804	8	2.3	7	2	3	0.9	"PREDICTED: Sus scrofa serologically defined colon cancer antigen 1 (SDCCAG1), mRNA /cds=p(266,3496) /gb=XM_001924630 /gi=311245466 /ug=Ssc.26639 /len=3779"	-	-	-	gi|311245467|ref|XP_001924665.2|/0/PREDICTED: serologically defined colon cancer antigen 1 [Sus scrofa]
gnl|UG|Ssc#S40155992	0	0	0	0	4	1.2	"rhyp09c_m4.y1 hyp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW250899 /gi=182539206 /ug=Ssc.68221 /len=379"	-	-	-	-
gnl|UG|Ssc#S58310103	86	24.76	179	51.17	62	18.63	"PREDICTED: Sus scrofa serine hydroxymethyltransferase, mitochondrial-like (LOC100514459), mRNA /cds=p(373,1824) /gb=XM_003126297 /gi=311255742 /ug=Ssc.11966 /len=2187"	GO:0005856//cytoskeleton;GO:0019866//organelle inner membrane;GO:0005759//mitochondrial matrix;GO:0005740//mitochondrial envelope	"GO:0016742//hydroxymethyl-, formyl- and related transferase activity;GO:0031406//carboxylic acid binding;GO:0005515//protein binding;GO:0004793//threonine aldolase activity;GO:0048037//cofactor binding"	GO:0051260//protein homooligomerization;GO:0006730//one-carbon metabolic process;GO:0006545//glycine biosynthetic process;GO:0006563//L-serine metabolic process;GO:0008283//cell proliferation	"gi|311255743|ref|XP_003126345.1|/0/PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S31110016	6	1.73	8	2.29	0	0	"1519825 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY413854 /gi=87215157 /ug=Ssc.40659 /len=618"	-	-	-	-
gnl|UG|Ssc#S55322248	0	0	0	0	0	0	"Sus scrofa mRNA, clone:DCI010090F05, expressed in dendritic cells (immature) /gb=AK344635 /gi=288782624 /ug=Ssc.25143 /len=2654"	GO:0005815//microtubule organizing center;GO:0031981//nuclear lumen	-	-	gi|296479118|gb|DAA21233.1|/0/restin-like [Bos taurus]
gnl|UG|Ssc#S18359125	6	1.73	0	0	3	0.9	"915056 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK454566 /gi=40801780 /ug=Ssc.29798 /len=806"	GO:0005815//microtubule organizing center;GO:0031253//cell projection membrane;GO:0005930//axoneme	GO:0043169//cation binding;GO:0032561	GO:0007264//small GTPase mediated signal transduction;GO:0010927;GO:0050953//sensory perception of light stimulus;GO:0009855//determination of bilateral symmetry;GO:0032401//establishment of melanosome localization;GO:0006464//protein modification process	gi|301769323|ref|XP_002920079.1|/1.12918e-50/PREDICTED: ADP-ribosylation factor-like protein 6-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S29987019	0	0	2	0.57	0	0	"PDUts2057G04 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2057G04 5' similar to homologue to gb|AC051654.9| Homo sapiens chromosome 8, clone RP11-35O14, complete sequence, mRNA sequence /clone=PDUts2057G04 /clone_end=5' /gb=CX061495 /gi=84137637 /ug=Ssc.33773 /len=557"	-	-	-	-
gnl|UG|Ssc#S55321006	621	178.79	424	121.2	737	221.49	"Sus scrofa mRNA, clone:LNG010035F04, expressed in lung /gb=AK345481 /gi=288783866 /ug=Ssc.81569 /len=1269"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation	gi|297689346|ref|XP_002822113.1|/2.61856e-147/PREDICTED: eukaryotic translation initiation factor 3 subunit F-like isoform 3 [Pongo abelii]
gnl|UG|Ssc#S20936817	192	55.28	59	16.87	121	36.36	"AJ648540 CSEQRAN19 Sus scrofa cDNA clone C0003264_P07, mRNA sequence /clone=C0003264_P07 /gb=AJ648540 /gi=49325385 /ug=Ssc.74108 /len=513"	GO:0043234//protein complex;GO:0048770;GO:0031981//nuclear lumen;GO:0015630//microtubule cytoskeleton	GO:0005515//protein binding;GO:0032559	GO:0051084//'de novo' posttranslational protein folding	gi|74226714|dbj|BAE27006.1|/9.36186e-88/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S55834723	0	0	2	0.57	0	0	"Sus scrofa autophagy related 4-like protein B (ATG4B) mRNA, complete cds /cds=p(15,1196) /gb=HM046508 /gi=296874483 /ug=Ssc.6320 /len=1218"	GO:0044424//intracellular part	GO:0004175//endopeptidase activity;GO:0005488//binding	GO:0019538//protein metabolic process;GO:0006810//transport;GO:0044248//cellular catabolic process;GO:0007033//vacuole organization	gi|298231123|ref|NP_001177212.1|/0/cysteine protease ATG4B [Sus scrofa]
gnl|UG|Ssc#S35173936	16	4.61	2	0.57	9	2.7	"Sus scrofa mRNA, clone:OVR010044D10, expressed in ovary /gb=AK234332 /gi=115545899 /ug=Ssc.48384 /len=2531"	-	GO:0019888//protein phosphatase regulator activity;GO:0019903//protein phosphatase binding;GO:0051723;GO:0019212//phosphatase inhibitor activity	GO:0008214	gi|74191897|dbj|BAE32896.1|/0/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S19542178	59	16.99	93	26.58	39	11.72	"947058 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158274 /gi=46172704 /ug=Ssc.1837 /len=819"	-	-	-	-
gnl|UG|Ssc#S55318917	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:UTR010035B09, expressed in uterus /gb=AK352253 /gi=288785967 /ug=Ssc.1189 /len=1105"	-	-	-	-
gnl|UG|Ssc#S17501934	0	0	2	0.57	0	0	"866683 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF789406 /gi=37793967 /ug=Ssc.22244 /len=666"	-	-	-	-
gnl|UG|Ssc#S55934028	7	2.02	5	1.43	6	1.8	"Sus scrofa chromosome 15 open reading frame 29 (C7H15orf29), mRNA /cds=p(233,1147) /gb=NM_001190181 /gi=298104086 /ug=Ssc.14780 /len=2804"	-	-	-	gi|298104087|ref|NP_001177110.1|/1.7173e-153/chromosome 15 open reading frame 29 [Sus scrofa]
gnl|UG|Ssc#S18555882	4	1.15	0	0	0	0	"BX924533 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0015.h.14 5prim, mRNA sequence /clone=scan0015.h.14 /clone_end=5' /gb=BX924533 /gi=90232395 /ug=Ssc.85070 /len=890"	GO:0005815//microtubule organizing center;GO:0042995//cell projection	GO:0004672//protein kinase activity;GO:0015631//tubulin binding;GO:0032182//small conjugating protein binding;GO:0032559	GO:0012501//programmed cell death;GO:0048731;GO:0006796//phosphate metabolic process;GO:0000226//microtubule cytoskeleton organization;GO:0006464//protein modification process	gi|296234095|ref|XP_002762282.1|/1.31128e-91/PREDICTED: MAP/microtubule affinity-regulating kinase 4 [Callithrix jacchus]
gnl|UG|Ssc#S58314384	4	1.15	3	0.86	0	0	"PREDICTED: Sus scrofa ring finger protein 38 (RNF38), mRNA /cds=p(112,1662) /gb=XM_003122017 /gi=311246050 /ug=Ssc.38191 /len=1834"	GO:0042995//cell projection	GO:0046914//transition metal ion binding	-	gi|311246051|ref|XP_003122065.1|/0/PREDICTED: RING finger protein 38-like [Sus scrofa]
gnl|UG|Ssc#S20936693	11	3.17	39	11.15	25	7.51	"AJ648416 CSEQRAN19 Sus scrofa cDNA clone C0003264_J15, mRNA sequence /clone=C0003264_J15 /gb=AJ648416 /gi=49325261 /ug=Ssc.74100 /len=499"	GO:0043234//protein complex;GO:0005770//late endosome;GO:0044421//extracellular region part	GO:0046872//metal ion binding	GO:0051707//response to other organism;GO:0006875//cellular metal ion homeostasis;GO:0048232//male gamete generation;GO:0070838//divalent metal ion transport;GO:0043066//negative regulation of apoptosis	gi|6678437|ref|NP_033455.1|/6.76242e-88/translationally-controlled tumor protein [Mus musculus]
gnl|UG|Ssc#S55323869	0	0	7	2	0	0	"Sus scrofa mRNA, clone:AMP010047F04, expressed in alveolar macrophages /gb=AK343792 /gi=288781003 /ug=Ssc.76735 /len=1814"	-	-	-	gi|311262615|ref|XP_003129269.1|/5.88295e-125/PREDICTED: TNFAIP3-interacting protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58311770	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa glyoxylate reductase 1 homolog (Arabidopsis) (GLYR1), mRNA /cds=p(1,1662) /gb=XM_003124627 /gi=311251577 /ug=Ssc.18242 /len=1662"	GO:0043231//intracellular membrane-bounded organelle	"GO:0003676//nucleic acid binding;GO:0042393//histone binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0048037//cofactor binding"	GO:0006007//glucose catabolic process	gi|311251578|ref|XP_003124675.1|/0/PREDICTED: putative oxidoreductase GLYR1-like [Sus scrofa]
gnl|UG|Ssc#S23755889	0	0	0	0	3	0.9	"1112791 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN113508 /gi=59807241 /ug=Ssc.81610 /len=771"	-	-	-	-
gnl|UG|Ssc#S58304651	15	4.32	2	0.57	14	4.21	"PREDICTED: Sus scrofa UTP6, small subunit (SSU) processome component, homolog (yeast) (UTP6), mRNA /cds=p(102,1898) /gb=XM_003131746 /gi=311267904 /ug=Ssc.6804 /len=3584"	GO:0031981//nuclear lumen	GO:0005488//binding	GO:0042254//ribosome biogenesis;GO:0010467//gene expression	gi|311267905|ref|XP_003131794.1|/0/PREDICTED: u3 small nucleolar RNA-associated protein 6 homolog [Sus scrofa]
gnl|UG|Ssc#S58314823	14	4.03	16	4.57	25	7.51	"PREDICTED: Sus scrofa jmjC domain-containing protein 7-like (LOC100523297), mRNA /cds=p(1,900) /gb=XM_003121605 /gi=311244933 /ug=Ssc.91195 /len=1285"	-	-	-	gi|311244934|ref|XP_003121653.1|/1.83384e-180/PREDICTED: jmjC domain-containing protein 7-like [Sus scrofa]
gnl|UG|Ssc#S17504265	12	3.45	0	0	7	2.1	"880065 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF791721 /gi=37796282 /ug=Ssc.75106 /len=593"	GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0043169//cation binding	GO:0009966//regulation of signal transduction;GO:0035556//intracellular signal transduction	gi|302393539|ref|NP_001180579.1|/1.08743e-23/N-chimaerin [Felis catus]
gnl|UG|Ssc#S35164619	63	18.14	21	6	42	12.62	"Sus scrofa mRNA, clone:UTR010052F09, expressed in uterus /gb=AK240306 /gi=115555107 /ug=Ssc.36224 /len=2035"	-	-	-	gi|73968495|ref|XP_531644.2|/0/PREDICTED: similar to R3H domain protein KIAA1002 isoform 2 [Canis familiaris]
gnl|UG|Ssc#S58303524	0	0	0	0	0	0	"PREDICTED: Sus scrofa RILP-like protein 2-like (LOC100518937), mRNA /cds=p(360,1043) /gb=XM_003132867 /gi=311270575 /ug=Ssc.11089 /len=2156"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0005515//protein binding	-	gi|311270576|ref|XP_003132915.1|/7.5188e-106/PREDICTED: RILP-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S16515227	6	1.73	2	0.57	8	2.4	"808232 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF178727 /gi=33290503 /ug=Ssc.82995 /len=508"	GO:0005626//insoluble fraction;GO:0031981//nuclear lumen;GO:0044459//plasma membrane part;GO:0042995//cell projection	GO:0005488//binding;GO:0016248//channel inhibitor activity	"GO:0048519;GO:0051234//establishment of localization;GO:0006351//transcription, DNA-dependent;GO:0022600//digestive system process"	gi|47523258|ref|NP_998958.1|/1.22068e-23/regulatory solute carrier protein family 1 member 1 [Sus scrofa]
gnl|UG|Ssc#S40284472	7	2.02	4	1.14	15	4.51	"rmed03c_a16.y1 med Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW379379 /gi=182787712 /ug=Ssc.2810 /len=700"	GO:0043231//intracellular membrane-bounded organelle;GO:0031234//extrinsic to internal side of plasma membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0060089	GO:0007267//cell-cell signaling;GO:0033762//response to glucagon stimulus;GO:0009207;GO:0015980//energy derivation by oxidation of organic compounds;GO:0007166//cell surface receptor linked signaling pathway	gi|4885287|ref|NP_005265.1|/2.91408e-30/guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 precursor [Homo sapiens]
gnl|UG|Ssc#S35172811	6	1.73	0	0	0	0	"Sus scrofa mRNA, clone:AMP010090G10, expressed in alveolar macrophage /gb=AK231079 /gi=115547024 /ug=Ssc.39693 /len=2197"	GO:0005626//insoluble fraction;GO:0044297//cell body;GO:0030425//dendrite;GO:0031224//intrinsic to membrane;GO:0005578//proteinaceous extracellular matrix;GO:0019866//organelle inner membrane;GO:0044459//plasma membrane part	GO:0016597//amino acid binding;GO:0005310//dicarboxylic acid transmembrane transporter activity;GO:0015291//secondary active transmembrane transporter activity;GO:0005313//L-glutamate transmembrane transporter activity	GO:0015813//L-glutamate transport;GO:0043090//amino acid import;GO:0050954//sensory perception of mechanical stimulus;GO:0008652//cellular amino acid biosynthetic process;GO:0000904//cell morphogenesis involved in differentiation;GO:0007638//mechanosensory behavior;GO:0001101//response to acid;GO:0021675//nerve development;GO:0050804//regulation of synaptic transmission;GO:0001505//regulation of neurotransmitter levels;GO:0006536//glutamate metabolic process;GO:0009314//response to radiation;GO:0006950//response to stress;GO:0006839//mitochondrial transport;GO:0050905//neuromuscular process	gi|27807085|ref|NP_777025.1|/0/excitatory amino acid transporter 1 [Bos taurus]
gnl|UG|Ssc#S20938005	4	1.15	0	0	6	1.8	"AJ649728 CSEQRAN19 Sus scrofa cDNA clone C0003273_E20, mRNA sequence /clone=C0003273_E20 /gb=AJ649728 /gi=49326573 /ug=Ssc.85620 /len=407"	GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|157786606|ref|NP_001099251.1|/9.0686e-67/39S ribosomal protein L22, mitochondrial precursor [Rattus norvegicus]"
gnl|UG|Ssc#S55243451	2	0.58	2	0.57	0	0	"FS667602 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10048G02 5', mRNA sequence /clone=HTMT10048G02 /clone_end=5' /gb=FS667602 /gi=288232680 /ug=Ssc.70986 /len=800"	GO:0015630//microtubule cytoskeleton;GO:0044444//cytoplasmic part;GO:0032432//actin filament bundle	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0051259//protein oligomerization;GO:0009207	gi|73964981|ref|XP_540458.2|/5.7538e-140/PREDICTED: similar to Septin-9 (MLL septin-like fusion protein) (MLL septin-like fusion protein MSF-A) (Ovarian/Breast septin) (Ov/Br septin) (Septin D1) [Canis familiaris]
gnl|UG|Ssc#S58312697	2	0.58	2	0.57	4	1.2	"PREDICTED: Sus scrofa collagen type IV alpha-3-binding protein-like (LOC100518474), mRNA /cds=p(1,2277) /gb=XM_003123707 /gi=311249677 /ug=Ssc.20371 /len=3169"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0031090//organelle membrane	GO:0035091//phosphatidylinositol binding;GO:0046625//sphingolipid binding;GO:0016301//kinase activity	GO:0006796//phosphate metabolic process;GO:0033554//cellular response to stress;GO:0043009//chordate embryonic development;GO:0048878//chemical homeostasis;GO:0003012//muscle system process;GO:0032989;GO:0009887//organ morphogenesis;GO:0023052//signaling;GO:0002376//immune system process;GO:0032365//intracellular lipid transport;GO:0007005//mitochondrion organization;GO:0046519;GO:0006464//protein modification process	gi|311249678|ref|XP_003123755.1|/0/PREDICTED: collagen type IV alpha-3-binding protein-like [Sus scrofa]
gnl|UG|Ssc#S35172209	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:ITT010029H11, expressed in intestine /gb=AK231284 /gi=115547626 /ug=Ssc.1701 /len=2589"	GO:0005770//late endosome;GO:0005764//lysosome;GO:0031224//intrinsic to membrane	GO:0043169//cation binding;GO:0003824//catalytic activity	GO:0051234//establishment of localization;GO:0006091//generation of precursor metabolites and energy	gi|311247532|ref|XP_003122687.1|/7.11315e-122/PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55327440	8	2.3	0	0	6	1.8	"Sus scrofa mRNA, clone:MLTL10053G07, expressed in longissimus /gb=AK347209 /gi=288576614 /ug=Ssc.49175 /len=1399"	GO:0005667//transcription factor complex	"GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0004674//protein serine/threonine kinase activity;GO:0003723//RNA binding;GO:0042623//ATPase activity, coupled"	"GO:0006397//mRNA processing;GO:0006352//transcription initiation, DNA-dependent;GO:0002029//desensitization of G-protein coupled receptor protein signaling pathway;GO:0006353//transcription termination, DNA-dependent;GO:0006289//nucleotide-excision repair;GO:0006354//transcription elongation, DNA-dependent;GO:0009416//response to light stimulus;GO:0045935"	gi|109077529|ref|XP_001095474.1|/0/PREDICTED: general transcription factor IIH subunit 2 isoform 1 [Macaca mulatta]
gnl|UG|Ssc#S20945084	10	2.88	19	5.43	20	6.01	"AJ656807 KN277 Sus scrofa cDNA clone C0005194_B11, mRNA sequence /clone=C0005194_B11 /gb=AJ656807 /gi=49340839 /ug=Ssc.5668 /len=671"	-	-	-	-
gnl|UG|Ssc#S55326866	290	83.49	56	16.01	161	48.38	"Sus scrofa mRNA, clone:OVR010097E11, expressed in ovary /gb=AK347785 /gi=288777960 /ug=Ssc.1498 /len=1086"	GO:0043231//intracellular membrane-bounded organelle;GO:0000502//proteasome complex	GO:0004175//endopeptidase activity;GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0051704"	gi|194038905|ref|XP_001924480.1|/2.59215e-129/PREDICTED: proteasome subunit beta type-5 [Sus scrofa]
gnl|UG|Ssc#S35170622	16	4.61	9	2.57	6	1.8	"Sus scrofa mRNA, clone:LNG010043C07, expressed in lung /gb=AK231893 /gi=115549217 /ug=Ssc.7239 /len=1565"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0016842	GO:0051259//protein oligomerization;GO:0031667//response to nutrient levels;GO:0045333//cellular respiration;GO:0009168//purine ribonucleoside monophosphate biosynthetic process;GO:0009112	gi|282277831|gb|ADA82235.1|/0/adenylosuccinate lyase [Sus scrofa]
gnl|UG|Ssc#S46876606	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa protein-tyrosine sulfotransferase 2-like (LOC100154448), mRNA /cds=p(154,1287) /gb=XM_001927270 /gi=311270838 /ug=Ssc.21571 /len=1796"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0008146//sulfotransferase activity	GO:0006477//protein sulfation	gi|297260774|ref|XP_001105516.2|/0/PREDICTED: protein-tyrosine sulfotransferase 2-like [Macaca mulatta]
gnl|UG|Ssc#S23693612	4	1.15	2	0.57	0	0	"1100536 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN104715 /gi=59779038 /ug=Ssc.87035 /len=770"	-	-	-	-
gnl|UG|Ssc#S58310516	23	6.62	24	6.86	12	3.61	"PREDICTED: Sus scrofa RNA-binding protein 40-like (LOC100522864), mRNA /cds=p(354,1901) /gb=XM_003125883 /gi=311254709 /ug=Ssc.2922 /len=3589"	-	-	-	gi|311254710|ref|XP_003125931.1|/0/PREDICTED: RNA-binding protein 40-like [Sus scrofa]
gnl|UG|Ssc#S58308813	0	0	3	0.86	2	0.6	"PREDICTED: Sus scrofa procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like (LOC100525583), mRNA /cds=p(52,2229) /gb=XM_003127577 /gi=311258477 /ug=Ssc.23519 /len=3185"	GO:0005789//endoplasmic reticulum membrane	"GO:0019842//vitamin binding;GO:0046914//transition metal ion binding;GO:0042802//identical protein binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0070815//peptidyl-lysine 5-dioxygenase activity"	GO:0009888//tissue development;GO:0009067//aspartate family amino acid biosynthetic process;GO:0043412;GO:0006950//response to stress	"gi|311258478|ref|XP_003127625.1|/0/PREDICTED: procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like [Sus scrofa]"
gnl|UG|Ssc#S23759718	10	2.88	7	2	10	3.01	"1116993 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN117337 /gi=59811597 /ug=Ssc.19276 /len=801"	GO:0000267//cell fraction;GO:0005635//nuclear envelope	GO:0030695//GTPase regulator activity;GO:0022892;GO:0017016//Ras GTPase binding	GO:0051704;GO:0023052//signaling;GO:0006605//protein targeting	gi|297689296|ref|XP_002822070.1|/3.75554e-115/PREDICTED: LOW QUALITY PROTEIN: importin-7-like [Pongo abelii]
gnl|UG|Ssc#S35168173	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:THY010053D05, expressed in thymus /gb=AK238981 /gi=115551517 /ug=Ssc.67781 /len=1305"	GO:0000152//nuclear ubiquitin ligase complex	-	GO:0032446//protein modification by small protein conjugation;GO:0000087//M phase of mitotic cell cycle	gi|298160956|ref|NP_001177154.1|/1.00287e-40/anaphase promoting complex subunit 16 [Sus scrofa]
gnl|UG|Ssc#S23763374	5	1.44	9	2.57	17	5.11	"1121057 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN120993 /gi=59815272 /ug=Ssc.81509 /len=840"	-	-	-	-
gnl|UG|Ssc#S58310000	16	4.61	6	1.72	15	4.51	"PREDICTED: Sus scrofa importin 8 (IPO8), mRNA /cds=p(1,3327) /gb=XM_003126400 /gi=311255975 /ug=Ssc.73746 /len=3327"	GO:0043231//intracellular membrane-bounded organelle	GO:0022892;GO:0017016//Ras GTPase binding;GO:0005049//nuclear export signal receptor activity	GO:0023052//signaling;GO:0015031//protein transport	gi|311255976|ref|XP_003126448.1|/0/PREDICTED: importin-8-like [Sus scrofa]
gnl|UG|Ssc#S40430181	16	4.61	16	4.57	20	6.01	"rrec24_o24.y1 rec Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW524787 /gi=183116610 /ug=Ssc.40496 /len=583"	-	-	-	-
gnl|UG|Ssc#S58304054	102	29.37	100	28.58	110	33.06	"PREDICTED: Sus scrofa ADP-ribosylation factor-like protein 8B-like (LOC100515580), mRNA /cds=p(1,735) /gb=XM_003132343 /gi=311269209 /ug=Ssc.7608 /len=3072"	GO:0005764//lysosome;GO:0015630//microtubule cytoskeleton;GO:0005770//late endosome;GO:0044430//cytoskeletal part	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0015631//tubulin binding	GO:0035556//intracellular signal transduction;GO:0000087//M phase of mitotic cell cycle;GO:0009207	gi|311269210|ref|XP_003132391.1|/5.20409e-135/PREDICTED: ADP-ribosylation factor-like protein 8B-like [Sus scrofa]
gnl|UG|Ssc#S35166609	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:THY010125E10, expressed in thymus /gb=AK239716 /gi=115553130 /ug=Ssc.14255 /len=1241"	GO:0043232;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0004857//enzyme inhibitor activity	GO:0065008;GO:0043409//negative regulation of MAPKKK cascade;GO:0006897//endocytosis	gi|9910544|ref|NP_064624.1|/9.30058e-41/CDC42 small effector protein 1 [Homo sapiens]
gnl|UG|Ssc#S35173892	66	19	74	21.15	42	12.62	"Sus scrofa mRNA, clone:SPL010033H08, expressed in spleen /gb=AK237384 /gi=115545943 /ug=Ssc.1446 /len=1809"	GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane;GO:0031410//cytoplasmic vesicle	GO:0031267//small GTPase binding	GO:0048017//inositol lipid-mediated signaling;GO:0031294;GO:0006796//phosphate metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|301761886|ref|XP_002916361.1|/0/PREDICTED: target of rapamycin complex 2 subunit MAPKAP1-like isoform 1 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58309833	0	0	5	1.43	0	0	"PREDICTED: Sus scrofa tubby-related protein 3-like (LOC100511196), mRNA /cds=p(36,1514) /gb=XM_003126566 /gi=311256354 /ug=Ssc.4332 /len=1751"	GO:0016020//membrane;GO:0005930//axoneme	GO:0035091//phosphatidylinositol binding	"GO:0006351//transcription, DNA-dependent;GO:0014020;GO:0043010//camera-type eye development;GO:0030326//embryonic limb morphogenesis;GO:0009887//organ morphogenesis;GO:0008589//regulation of smoothened signaling pathway;GO:0021513//spinal cord dorsal/ventral patterning"	gi|311256355|ref|XP_003126614.1|/0/PREDICTED: tubby-related protein 3-like [Sus scrofa]
gnl|UG|Ssc#S55326826	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:OVR010104D11, expressed in ovary /gb=AK347825 /gi=288778000 /ug=Ssc.47490 /len=2519"	GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0022402//cell cycle process	gi|194221645|ref|XP_001495595.2|/1.56219e-174/PREDICTED: centrosomal protein 70kDa [Equus caballus]
gnl|UG|Ssc#S35164371	5	1.44	7	2	8	2.4	"Sus scrofa mRNA, clone:MLN010083E10, expressed in mesenteric lymph node /gb=AK233968 /gi=115555355 /ug=Ssc.27566 /len=1427"	GO:0031981//nuclear lumen	"GO:0019842//vitamin binding;GO:0016706//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0003677//DNA binding;GO:0004518//nuclease activity;GO:0005506//iron ion binding"	GO:0006281//DNA repair;GO:0035511//oxidative DNA demethylation	gi|21040275|ref|NP_631917.1|/3.87366e-158/alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 [Homo sapiens]
gnl|UG|Ssc#S35328925	362	104.22	263	75.18	209	62.81	"SusFleck_BFN_0021_0024_5_pCNS_B06 SusFleck Backfat Normalized Sus scrofa cDNA clone 0021_0024_B06 5', mRNA sequence /clone=0021_0024_B06 /clone_end=5' /gb=DT327317 /gi=116339560 /ug=Ssc.21627 /len=817"	-	-	-	-
gnl|UG|Ssc#S58311163	4	1.15	4	1.14	9	2.7	"PREDICTED: Sus scrofa HEAT repeat containing 5B, transcript variant 1 (HEATR5B), mRNA /cds=p(1,6213) /gb=XM_003125238 /gi=311252824 /ug=Ssc.24785 /len=6805"	-	-	-	gi|311252825|ref|XP_003125286.1|/0/PREDICTED: HEAT repeat-containing protein 5B-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58302515	9	2.59	2	0.57	9	2.7	"PREDICTED: Sus scrofa DnaJ (Hsp40) homolog, subfamily C, member 21 (DNAJC21), mRNA /cds=p(175,1773) /gb=XM_003133880 /gi=311273566 /ug=Ssc.25237 /len=2092"	GO:0030529//ribonucleoprotein complex	GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0044267//cellular protein metabolic process	gi|311273567|ref|XP_003133928.1|/0/PREDICTED: dnaJ homolog subfamily C member 21-like [Sus scrofa]
gnl|UG|Ssc#S35172318	20	5.76	5	1.43	21	6.31	"Sus scrofa mRNA, clone:TCH010008H09, expressed in trachea /gb=AK237899 /gi=115547517 /ug=Ssc.58000 /len=1564"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044425//membrane part;GO:0044444//cytoplasmic part	GO:0005126//cytokine receptor binding;GO:0019787//small conjugating protein ligase activity	GO:0019941//modification-dependent protein catabolic process;GO:0016567//protein ubiquitination;GO:0007179//transforming growth factor beta receptor signaling pathway	gi|291406393|ref|XP_002719254.1|/0/PREDICTED: SMAD specific E3 ubiquitin protein ligase 2-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S46879850	13	3.74	13	3.72	13	3.91	"PREDICTED: Sus scrofa suppressor of IKK epsilon (LOC100156436), mRNA /cds=p(82,705) /gb=XM_001924186 /gi=311254532 /ug=Ssc.47230 /len=1828"	GO:0044444//cytoplasmic part	GO:0005488//binding	-	gi|194036419|ref|XP_001924221.1|/3.07492e-97/PREDICTED: suppressor of IKBKE 1 [Sus scrofa]
gnl|UG|Ssc#S35166354	2	0.58	3	0.86	3	0.9	"Sus scrofa mRNA, clone:OVRM10206D03, expressed in ovary /gb=AK236587 /gi=115553384 /ug=Ssc.4204 /len=1826"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0048029//monosaccharide binding;GO:0043169//cation binding;GO:0035251//UDP-glucosyltransferase activity	GO:0005977//glycogen metabolic process;GO:0019318//hexose metabolic process	gi|114052881|ref|NP_001039332.1|/0/glycogenin-1 [Bos taurus]
gnl|UG|Ssc#S58312523	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa centrosomal protein of 120 kDa-like (LOC100511682), mRNA /cds=p(117,3077) /gb=XM_003123877 /gi=311250034 /ug=Ssc.43671 /len=4697"	GO:0005815//microtubule organizing center	GO:0005515//protein binding	GO:0021846//cell proliferation in forebrain;GO:0021543//pallium development;GO:0007051//spindle organization;GO:0008104//protein localization	gi|311250035|ref|XP_003123925.1|/0/PREDICTED: centrosomal protein of 120 kDa-like [Sus scrofa]
gnl|UG|Ssc#S35167309	5	1.44	0	0	4	1.2	"Sus scrofa mRNA, clone:OVRM10192F09, expressed in ovary /gb=AK236435 /gi=115552430 /ug=Ssc.2439 /len=1769"	GO:0031981//nuclear lumen	-	-	gi|296235408|ref|XP_002762886.1|/0/PREDICTED: WD repeat-containing protein 13-like isoform 2 [Callithrix jacchus]
gnl|UG|Ssc#S35166612	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:THY010125D01, expressed in thymus /gb=AK239713 /gi=115553127 /ug=Ssc.48678 /len=1461"	GO:0005875//microtubule associated complex	-	GO:0031023//microtubule organizing center organization;GO:0007051//spindle organization;GO:0000087//M phase of mitotic cell cycle	gi|28207861|emb|CAD62584.1|/5.44152e-131/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S58303714	5	1.44	0	0	4	1.2	"PREDICTED: Sus scrofa poliovirus receptor-related protein 3-like (LOC100518152), mRNA /cds=p(1,1416) /gb=XM_003132685 /gi=311270016 /ug=Ssc.27518 /len=1416"	GO:0005911//cell-cell junction;GO:0031224//intrinsic to membrane	GO:0042802//identical protein binding	GO:0002088//lens development in camera-type eye;GO:0045216//cell-cell junction organization;GO:0016337//cell-cell adhesion;GO:0009653//anatomical structure morphogenesis;GO:0019953//sexual reproduction	gi|311270017|ref|XP_003132733.1|/0/PREDICTED: poliovirus receptor-related protein 3-like [Sus scrofa]
gnl|UG|Ssc#S55325996	8	2.3	12	3.43	6	1.8	"Sus scrofa mRNA, clone:OVRM10223B01, expressed in ovary /gb=AK348655 /gi=288778830 /ug=Ssc.3261 /len=1572"	-	-	-	-
gnl|UG|Ssc#S58308370	6	1.73	0	0	4	1.2	"PREDICTED: Sus scrofa leucine rich repeat containing 41 (LRRC41), mRNA /cds=p(1,2442) /gb=XM_003128024 /gi=311259389 /ug=Ssc.29387 /len=2928"	-	-	-	gi|311259390|ref|XP_003128072.1|/0/PREDICTED: leucine-rich repeat-containing protein 41-like [Sus scrofa]
gnl|UG|Ssc#S46876216	3	0.86	2	0.57	2	0.6	"PREDICTED: Sus scrofa pleckstrin homology domain-containing family A member 3-like (LOC100154010), mRNA /cds=p(87,989) /gb=XM_001925845 /gi=311272718 /ug=Ssc.9636 /len=2454"	GO:0044424//intracellular part	GO:0035091//phosphatidylinositol binding	-	gi|311272719|ref|XP_001925880.2|/7.80749e-155/PREDICTED: pleckstrin homology domain-containing family A member 3-like [Sus scrofa]
gnl|UG|Ssc#S58311027	0	0	0	0	5	1.5	"PREDICTED: Sus scrofa protein FAM49A-like (LOC100518011), mRNA /cds=p(165,1136) /gb=XM_003125345 /gi=311253099 /ug=Ssc.41061 /len=2764"	GO:0044464//cell part	-	-	"gi|148666026|gb|EDK98442.1|/0/DNA segment, Chr 12, ERATO Doi 553, expressed, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S58304373	7	2.02	2	0.57	0	0	"PREDICTED: Sus scrofa zinc finger protein 287-like (LOC100524396), mRNA /cds=p(1,1983) /gb=XM_003132027 /gi=311268474 /ug=Ssc.95115 /len=1983"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent;GO:0001817//regulation of cytokine production"	gi|311268475|ref|XP_003132075.1|/0/PREDICTED: zinc finger protein 287-like [Sus scrofa]
gnl|UG|Ssc#S58311377	0	0	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein C2orf78-like (LOC100520833), mRNA /cds=p(1,2682) /gb=XM_003125029 /gi=311252386 /ug=Ssc.88629 /len=2682"	-	-	-	gi|311252387|ref|XP_003125077.1|/0/PREDICTED: uncharacterized protein C2orf78-like [Sus scrofa]
gnl|UG|Ssc#S46879303	851	245.01	358	102.33	595	178.81	"PREDICTED: Sus scrofa ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide (ATP5B), mRNA /cds=p(50,1636) /gb=XM_001929410 /gi=311255710 /ug=Ssc.279 /len=1799"	"GO:0005759//mitochondrial matrix;GO:0000275//mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"	"GO:0042287//MHC protein binding;GO:0019829//cation-transporting ATPase activity;GO:0015078//hydrogen ion transmembrane transporter activity;GO:0046872//metal ion binding;GO:0032559;GO:0043498//cell surface binding;GO:0015662//ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;GO:0004888//transmembrane receptor activity"	"GO:0009180;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0006929//substrate-dependent cell migration;GO:0022900//electron transport chain;GO:0023052//signaling;GO:0009207;GO:0015986//ATP synthesis coupled proton transport;GO:0006897//endocytosis;GO:0030641//regulation of cellular pH;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0006839//mitochondrial transport"	"gi|194037554|ref|XP_001929445.1|/0/PREDICTED: ATP synthase subunit beta, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S35170331	12	3.45	0	0	15	4.51	"Sus scrofa mRNA, clone:OVRM10090H08, expressed in ovary /gb=AK235530 /gi=115549508 /ug=Ssc.52039 /len=2542"	GO:0035097//histone methyltransferase complex;GO:0016585//chromatin remodeling complex	GO:0043169//cation binding;GO:0018024//histone-lysine N-methyltransferase activity;GO:0043565//sequence-specific DNA binding	"GO:0034968//histone lysine methylation;GO:0048545//response to steroid hormone stimulus;GO:0033554//cellular response to stress;GO:0048534;GO:0006351//transcription, DNA-dependent;GO:0008283//cell proliferation"	gi|194226432|ref|XP_001492099.2|/0/PREDICTED: similar to ash2-like [Equus caballus]
gnl|UG|Ssc#S55322893	42	12.09	237	67.75	54	16.23	"Sus scrofa mRNA, clone:TCH010005F09, expressed in trachea /gb=AK350650 /gi=288781979 /ug=Ssc.15245 /len=1924"	-	-	-	-
gnl|UG|Ssc#S55934052	0	0	4	1.14	0	0	"Sus scrofa regulator of G-protein signaling 4 (RGS4), mRNA /cds=p(120,737) /gb=NM_001185184 /gi=297747293 /ug=Ssc.6384 /len=2912"	GO:0005626//insoluble fraction;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0008047//enzyme activator activity;GO:0060089;GO:0005515//protein binding	GO:0043087//regulation of GTPase activity;GO:0000165//MAPKKK cascade;GO:0007186//G-protein coupled receptor protein signaling pathway	gi|156416012|ref|NP_001095915.1|/1.45438e-107/regulator of G-protein signaling 4 isoform 1 [Homo sapiens]
gnl|UG|Ssc#S18378149	2	0.58	0	0	0	0	"922625 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK458262 /gi=40829543 /ug=Ssc.54218 /len=842"	-	GO:0005488//binding	-	gi|296482103|gb|DAA24218.1|/5.98305e-106/surfeit 2-like [Bos taurus]
gnl|UG|Ssc#S55325284	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:PTG010056G05, expressed in pituitary gland /gb=AK349367 /gi=288779542 /ug=Ssc.16173 /len=986"	-	-	-	-
gnl|UG|Ssc#S55323234	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:SPL010082B06, expressed in spleen /gb=AK350508 /gi=288781638 /ug=Ssc.4552 /len=3229"	GO:0034385;GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane;GO:0012505//endomembrane system;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0030295//protein kinase activator activity;GO:0030228//lipoprotein particle receptor activity;GO:0030169//low-density lipoprotein particle binding;GO:0046872//metal ion binding	GO:0032496//response to lipopolysaccharide;GO:0016125//sterol metabolic process;GO:0032868//response to insulin stimulus;GO:0007611//learning or memory;GO:0034381//plasma lipoprotein particle clearance;GO:0021543//pallium development;GO:0016192//vesicle-mediated transport;GO:0001666//response to hypoxia;GO:0007165//signal transduction;GO:0045860//positive regulation of protein kinase activity;GO:0070555//response to interleukin-1;GO:0010876;GO:0009267//cellular response to starvation	"gi|148709700|gb|EDL41646.1|/0/very low density lipoprotein receptor, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S46880249	24	6.91	33	9.43	18	5.41	"PREDICTED: Sus scrofa ring finger protein 139 (RNF139), mRNA /cds=p(1,1998) /gb=XM_001927531 /gi=311253397 /ug=Ssc.18398 /len=2726"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding;GO:0004871//signal transducer activity;GO:0003824//catalytic activity	GO:0016567//protein ubiquitination;GO:0023052//signaling	gi|194035593|ref|XP_001927566.1|/0/PREDICTED: e3 ubiquitin-protein ligase RNF139 [Sus scrofa]
gnl|UG|Ssc#S58311039	12	3.45	0	0	7	2.1	"PREDICTED: Sus scrofa matrilin-3-like (LOC100516005), mRNA /cds=p(1,1467) /gb=XM_003125336 /gi=311253075 /ug=Ssc.60396 /len=1467"	GO:0031012//extracellular matrix	GO:0005198//structural molecule activity;GO:0005488//binding	GO:0048731	gi|311253076|ref|XP_003125384.1|/0/PREDICTED: matrilin-3-like [Sus scrofa]
gnl|UG|Ssc#S58308743	144	41.46	262	74.89	112	33.66	"PREDICTED: Sus scrofa ubiquitin protein ligase E3 component n-recognin 4 (UBR4), mRNA /cds=p(1,9849) /gb=XM_003127659 /gi=311258620 /ug=Ssc.1150 /len=10167"	GO:0043232;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0019787//small conjugating protein ligase activity	GO:0051704;GO:0032446//protein modification by small protein conjugation	gi|311258621|ref|XP_003127707.1|/0/PREDICTED: e3 ubiquitin-protein ligase UBR4-like [Sus scrofa]
gnl|UG|Ssc#S58314956	3	0.86	3	0.86	6	1.8	"PREDICTED: Sus scrofa polymerase (DNA directed) iota (POLI), mRNA /cds=p(1,2217) /gb=XM_003121446 /gi=311244548 /ug=Ssc.18023 /len=2471"	GO:0031981//nuclear lumen	GO:0043169//cation binding;GO:0003677//DNA binding;GO:0034061	GO:0006259//DNA metabolic process	gi|311244549|ref|XP_003121494.1|/0/PREDICTED: DNA polymerase iota-like [Sus scrofa]
gnl|UG|Ssc#S55327632	4	1.15	0	0	4	1.2	"Sus scrofa S-phase kinase-associated protein 2 (p45) (SKP2), mRNA /cds=p(9,1283) /gb=NM_001171755 /gi=284520929 /ug=Ssc.22189 /len=1402"	GO:0031981//nuclear lumen;GO:0031461//cullin-RING ubiquitin ligase complex	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0005488//binding;GO:0019787//small conjugating protein ligase activity"	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0031668//cellular response to extracellular stimulus;GO:0030520//estrogen receptor signaling pathway;GO:0006796//phosphate metabolic process;GO:0051320;GO:0016567//protein ubiquitination;GO:0010629//negative regulation of gene expression;GO:0008284//positive regulation of cell proliferation	gi|284520930|ref|NP_001165226.1|/0/S-phase kinase-associated protein 2 [Sus scrofa]
gnl|UG|Ssc#S35170159	45	12.96	14	4	45	13.52	"Sus scrofa mRNA, clone:LNG010058B11, expressed in lung /gb=AK231959 /gi=115549680 /ug=Ssc.6208 /len=1275"	GO:0044421//extracellular region part	GO:0046914//transition metal ion binding	GO:0048534;GO:0008283//cell proliferation	gi|118601892|ref|NP_001073117.1|/1.15561e-126/cysteine-rich protein 2 [Bos taurus]
gnl|UG|Ssc#S58307854	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa copine-6-like (LOC100155292), mRNA /cds=p(335,2005) /gb=XM_003128536 /gi=311260972 /ug=Ssc.61742 /len=2005"	GO:0043005//neuron projection;GO:0005626//insoluble fraction	GO:0046872//metal ion binding;GO:0005543//phospholipid binding	GO:0048731;GO:0006810//transport;GO:0007267//cell-cell signaling;GO:0044238//primary metabolic process	gi|311260973|ref|XP_003128584.1|/0/PREDICTED: LOW QUALITY PROTEIN: copine-6-like [Sus scrofa]
gnl|UG|Ssc#S40441672	24	6.91	8	2.29	7	2.1	"rret28_f2.y1 ret Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW536278 /gi=183059548 /ug=Ssc.4694 /len=674"	-	-	-	-
gnl|UG|Ssc#S19545784	43	12.38	48	13.72	21	6.31	"951212 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN161880 /gi=46176310 /ug=Ssc.51998 /len=919"	-	-	-	gi|297294891|ref|XP_002804533.1|/1.09137e-18/PREDICTED: hypothetical protein LOC100427297 [Macaca mulatta]
gnl|UG|Ssc#S46877242	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa dynamin binding protein (DNMBP), mRNA /cds=p(1,4746) /gb=XM_001929395 /gi=311271731 /ug=Ssc.81235 /len=4746"	GO:0005794//Golgi apparatus	GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0005488//binding	GO:0007266//Rho protein signal transduction	gi|194041844|ref|XP_001929430.1|/0/PREDICTED: dynamin-binding protein [Sus scrofa]
gnl|UG|Ssc#S58308741	30	8.64	12	3.43	50	15.03	"PREDICTED: Sus scrofa aflatoxin B1 aldehyde reductase member 2-like (LOC100511331), mRNA /cds=p(20,1129) /gb=XM_003127657 /gi=311258624 /ug=Ssc.2082 /len=1675"	GO:0043231//intracellular membrane-bounded organelle	GO:0004033//aldo-keto reductase activity	GO:0044238//primary metabolic process;GO:0044237//cellular metabolic process	gi|311258625|ref|XP_003127705.1|/0/PREDICTED: LOW QUALITY PROTEIN: aflatoxin B1 aldehyde reductase member 2-like [Sus scrofa]
gnl|UG|Ssc#S55325694	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:PBL010078H03, expressed in peripheral blood mononuclear cells /gb=AK348957 /gi=288779132 /ug=Ssc.55440 /len=1943"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0016859//cis-trans isomerase activity;GO:0005488//binding	GO:0050792//regulation of viral reproduction;GO:0044267//cellular protein metabolic process	gi|224549780|gb|ACN54007.1|/5.02699e-29/peptidylprolyl isomerase A [Scalopus aquaticus]
gnl|UG|Ssc#S58303762	0	0	0	0	0	0	"PREDICTED: Sus scrofa protein disulfide-isomerase A5-like (LOC100519053), mRNA /cds=p(1,939) /gb=XM_003132635 /gi=311269906 /ug=Ssc.83104 /len=939"	GO:0044432//endoplasmic reticulum part	"GO:0016862//intramolecular oxidoreductase activity, interconverting keto- and enol-groups;GO:0015036//disulfide oxidoreductase activity"	GO:0050896//response to stimulus;GO:0018904;GO:0044267//cellular protein metabolic process;GO:0019725//cellular homeostasis	gi|311269907|ref|XP_003132683.1|/3.15422e-162/PREDICTED: protein disulfide-isomerase A5-like [Sus scrofa]
gnl|UG|Ssc#S58304420	24	6.91	11	3.14	14	4.21	"PREDICTED: Sus scrofa nuclear distribution protein nudE-like 1-like (LOC100511592), mRNA /cds=p(184,1221) /gb=XM_003131972 /gi=311268376 /ug=Ssc.11671 /len=2369"	GO:0043005//neuron projection;GO:0005815//microtubule organizing center;GO:0045111//intermediate filament cytoskeleton;GO:0000776//kinetochore	GO:0015631//tubulin binding	GO:0032862//activation of Rho GTPase activity;GO:0051648//vesicle localization;GO:0007409//axonogenesis;GO:0045104//intermediate filament cytoskeleton organization;GO:0007067//mitosis;GO:0008088//axon cargo transport;GO:0001832//blastocyst growth;GO:0016477//cell migration	gi|73955651|ref|XP_850046.1|/0/PREDICTED: similar to nudE nuclear distribution gene E homolog like 1 (A. nidulans) isoform B isoform 1 [Canis familiaris]
gnl|UG|Ssc#S35164505	8	2.3	12	3.43	5	1.5	"Sus scrofa mRNA, clone:MLN010045F11, expressed in mesenteric lymph node /gb=AK233836 /gi=115555221 /ug=Ssc.53846 /len=1154"	GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0044459//plasma membrane part;GO:0030136//clathrin-coated vesicle;GO:0005768//endosome;GO:0042598//vesicular fraction	GO:0019905//syntaxin binding	GO:0006887//exocytosis;GO:0016044//cellular membrane organization;GO:0001881//receptor recycling;GO:0016197//endosome transport;GO:0065003;GO:0000904//cell morphogenesis involved in differentiation	gi|126337443|ref|XP_001375285.1|/1.5354e-34/PREDICTED: similar to cellubrevin [Monodelphis domestica]
gnl|UG|Ssc#S21573590	16	4.61	10	2.86	17	5.11	"UMC-pd10en3-003-h10 Endometrium gilt D10 of estrous cycle pd10en Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO986557 /gi=51345824 /ug=Ssc.94935 /len=303"	-	-	-	-
gnl|UG|Ssc#S46876062	116	33.4	57	16.29	114	34.26	"PREDICTED: Sus scrofa Sorting nexin 5, transcript variant 1 (LOC100155390), mRNA /cds=p(184,1398) /gb=XM_001926487 /gi=311274409 /ug=Ssc.10133 /len=2638"	GO:0005769//early endosome;GO:0031252//cell leading edge;GO:0012506//vesicle membrane;GO:0009898//internal side of plasma membrane;GO:0010008//endosome membrane;GO:0042995//cell projection	GO:0005543//phospholipid binding	GO:0006897//endocytosis	gi|311274408|ref|XP_003134314.1|/0/PREDICTED: sorting nexin-5 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S29975731	4	1.15	0	0	2	0.6	"PDUts1102C11 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1102C11 5' similar to homologue to ref|NM_022757.3| Homo sapiens hypothetical protein FLJ12892 (FLJ12892), mRNA, mRNA sequence /clone=PDUts1102C11 /clone_end=5' /gb=CV872389 /gi=84126349 /ug=Ssc.88425 /len=634"	-	-	-	"gi|301783201|ref|XP_002927017.1|/1.13727e-85/PREDICTED: coiled-coil domain-containing protein 14-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S46877376	0	0	0	0	0	0	"PREDICTED: Sus scrofa homeobox containing 1 (HMBOX1), mRNA /cds=p(370,1644) /gb=XM_001926736 /gi=311270414 /ug=Ssc.43040 /len=2448"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	"GO:0006355//regulation of transcription, DNA-dependent"	gi|311270415|ref|XP_001926771.2|/0/PREDICTED: LOW QUALITY PROTEIN: homeobox-containing protein 1 [Sus scrofa]
gnl|UG|Ssc#S26726878	12	3.45	12	3.43	16	4.81	"AJ962962 KN404_2 Sus scrofa cDNA clone C0007752h21 5', mRNA sequence /clone=C0007752h21 /clone_end=5' /gb=AJ962962 /gi=74379778 /ug=Ssc.16613 /len=889"	-	-	-	-
gnl|UG|Ssc#S19545458	4	1.15	0	0	6	1.8	"950860 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN161554 /gi=46175984 /ug=Ssc.57415 /len=888"	-	-	-	-
gnl|UG|Ssc#S58309866	0	0	2	0.57	5	1.5	"PREDICTED: Sus scrofa intermediate filament family orphan 1-like, transcript variant 1 (LOC100515778), mRNA /cds=p(11,1726) /gb=XM_003126530 /gi=311256282 /ug=Ssc.6958 /len=2799"	-	-	-	gi|311256283|ref|XP_003126578.1|/0/PREDICTED: intermediate filament family orphan 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S31986131	0	0	0	0	3	0.9	"BMILT075 Banna Minipig Inbred line liver tissue cDNA library Sus scrofa cDNA, mRNA sequence /gb=DY684977 /gi=89754013 /ug=Ssc.4173 /len=941"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0009987//cellular process	gi|297715125|ref|XP_002833950.1|/2.89956e-107/PREDICTED: zinc finger protein 592-like [Pongo abelii]
gnl|UG|Ssc#S46877209	0	0	0	0	0	0	"PREDICTED: Sus scrofa CG8379 CG8379-PA (LOC100156620), mRNA /cds=p(1,2070) /gb=XM_001928158 /gi=194041910 /ug=Ssc.19626 /len=2848"	GO:0031224//intrinsic to membrane	-	-	gi|194041911|ref|XP_001928193.1|/0/PREDICTED: UPF0668 protein C10orf76 [Sus scrofa]
gnl|UG|Ssc#S20116575	13	3.74	47	13.43	16	4.81	"Sus scrofa CRY protein (CRY), mRNA /cds=p(36,1004) /gb=NM_213881 /gi=47523095 /ug=Ssc.9178 /len=1513"	GO:0044444//cytoplasmic part	"GO:0042802//identical protein binding;GO:0051287//NAD binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0005198//structural molecule activity"	GO:0032787//monocarboxylic acid metabolic process	gi|47523096|ref|NP_999046.1|/8.64145e-172/lambda-crystallin homolog [Sus scrofa]
gnl|UG|Ssc#S58303063	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa UPF0636 protein C4orf41 homolog (LOC100515058), mRNA /cds=p(1,2580) /gb=XM_003133337 /gi=311272285 /ug=Ssc.86952 /len=2580"	-	-	-	gi|311272286|ref|XP_003133385.1|/0/PREDICTED: UPF0636 protein C4orf41 homolog [Sus scrofa]
gnl|UG|Ssc#S35169214	8	2.3	6	1.72	12	3.61	"Sus scrofa mRNA, clone:LVR010049F05, expressed in liver /gb=AK232455 /gi=115550625 /ug=Ssc.52086 /len=1219"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0016251//general RNA polymerase II transcription factor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|194038506|ref|XP_001928077.1|/7.78063e-109/PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Sus scrofa]
gnl|UG|Ssc#S35171042	18	5.18	12	3.43	17	5.11	"Sus scrofa mRNA, clone:LNG010019G08, expressed in lung /gb=AK231755 /gi=115548797 /ug=Ssc.48461 /len=1999"	GO:0044444//cytoplasmic part;GO:0000267//cell fraction	"GO:0016884//carbon-nitrogen ligase activity, with glutamine as amido-N-donor;GO:0042802//identical protein binding;GO:0032559"	GO:0009314//response to radiation;GO:0001101//response to acid;GO:0006915//apoptosis;GO:0034698//response to gonadotropin stimulus;GO:0009267//cellular response to starvation;GO:0009064//glutamine family amino acid metabolic process;GO:0014070//response to organic cyclic compound;GO:0048513//organ development;GO:0006528//asparagine metabolic process;GO:0007346//regulation of mitotic cell cycle	gi|264681434|ref|NP_001161112.1|/0/asparagine synthetase [Sus scrofa]
gnl|UG|Ssc#S16768369	0	0	0	0	2	0.6	"836634 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF365968 /gi=34169095 /ug=Ssc.70361 /len=626"	GO:0043231//intracellular membrane-bounded organelle;GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|62654783|ref|XP_217361.3|/3.09542e-29/PREDICTED: ribosomal protein L10a-like [Rattus norvegicus]
gnl|UG|Ssc#S35169057	3	0.86	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10120G06, expressed in ovary /gb=AK235857 /gi=115550782 /ug=Ssc.84294 /len=1036"	GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle;GO:0005856//cytoskeleton;GO:0031252//cell leading edge;GO:0005924//cell-substrate adherens junction;GO:0044444//cytoplasmic part	GO:0008092//cytoskeletal protein binding	GO:0048858//cell projection morphogenesis;GO:0051259//protein oligomerization;GO:0007010//cytoskeleton organization;GO:0034330	gi|311248193|ref|XP_003123021.1|/6.38051e-98/PREDICTED: alpha-parvin-like [Sus scrofa]
gnl|UG|Ssc#S58302387	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa UPF0533 protein C5orf44 homolog (LOC100513053), mRNA /cds=p(304,1560) /gb=XM_003134010 /gi=311273826 /ug=Ssc.14158 /len=2888"	-	-	-	gi|311273827|ref|XP_003134058.1|/0/PREDICTED: UPF0533 protein C5orf44 homolog [Sus scrofa]
gnl|UG|Ssc#S58329905	56	16.12	42	12.01	36	10.82	"Sus scrofa Rho GDP dissociation inhibitor alpha (ARHGDIA) mRNA, complete cds /cds=p(75,689) /gb=HQ697265 /gi=315321425 /ug=Ssc.55483 /len=1881"	GO:0043232;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0008047//enzyme activator activity;GO:0005092//GDP-dissociation inhibitor activity	GO:0043087//regulation of GTPase activity;GO:0007265//Ras protein signal transduction;GO:0007155//cell adhesion;GO:0031346//positive regulation of cell projection organization;GO:0010769//regulation of cell morphogenesis involved in differentiation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0008104//protein localization;GO:0009966//regulation of signal transduction;GO:0031345//negative regulation of cell projection organization;GO:0043066//negative regulation of apoptosis	gi|28603774|ref|NP_788823.1|/4.55134e-112/rho GDP-dissociation inhibitor 1 [Bos taurus]
gnl|UG|Ssc#S58309344	15	4.32	7	2	11	3.31	"PREDICTED: Sus scrofa histone-lysine N-methyltransferase MLL4-like (LOC100520742), partial mRNA /cds=p(1,4958) /gb=XM_003127067 /gi=311257399 /ug=Ssc.4050 /len=5257"	GO:0043231//intracellular membrane-bounded organelle;GO:0034708	GO:0046914//transition metal ion binding;GO:0018024//histone-lysine N-methyltransferase activity;GO:0001071//nucleic acid binding transcription factor activity	"GO:0034968//histone lysine methylation;GO:0006351//transcription, DNA-dependent;GO:0006338//chromatin remodeling"	"gi|311257400|ref|XP_003127115.1|/0/PREDICTED: histone-lysine N-methyltransferase MLL4-like, partial [Sus scrofa]"
gnl|UG|Ssc#S55320140	19	5.47	8	2.29	9	2.7	"Sus scrofa mRNA, clone:LVR010071G03, expressed in liver /gb=AK345950 /gi=288784732 /ug=Ssc.30418 /len=1872"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|149722721|ref|XP_001495005.1|/0/PREDICTED: zinc finger protein 135 [Equus caballus]
gnl|UG|Ssc#S49953834	0	0	2	0.57	0	0	"Sus scrofa phosphatidic acid phosphatase type 2C isoform 1 (PPAP2C) mRNA, complete cds /cds=p(39,902) /gb=FJ436381 /gi=217314876 /ug=Ssc.4862 /len=1213"	GO:0031224//intrinsic to membrane	GO:0016791//phosphatase activity	GO:0006796//phosphate metabolic process;GO:0006643//membrane lipid metabolic process	gi|219522016|ref|NP_001137195.1|/6.48768e-148/lipid phosphate phosphohydrolase 2 [Sus scrofa]
gnl|UG|Ssc#S58304223	7	2.02	2	0.57	9	2.7	"PREDICTED: Sus scrofa putative ATP-dependent RNA helicase DHX30-like (LOC100518989), mRNA /cds=p(196,3780) /gb=XM_003132174 /gi=311268825 /ug=Ssc.19155 /len=3853"	GO:0005759//mitochondrial matrix	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	-	gi|311268826|ref|XP_003132222.1|/0/PREDICTED: putative ATP-dependent RNA helicase DHX30-like [Sus scrofa]
gnl|UG|Ssc#S58315113	32	9.21	58	16.58	44	13.22	"PREDICTED: Sus scrofa akirin-2-like (LOC100519991), mRNA /cds=p(606,1217) /gb=XM_003121291 /gi=311244163 /ug=Ssc.9416 /len=2498"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0016564//transcription repressor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0001819//positive regulation of cytokine production;GO:0002237//response to molecule of bacterial origin;GO:0007275//multicellular organismal development;GO:0008283//cell proliferation	gi|311244164|ref|XP_003121339.1|/1.14229e-68/PREDICTED: akirin-2-like [Sus scrofa]
gnl|UG|Ssc#S58306316	0	0	0	0	0	0	"PREDICTED: Sus scrofa A disintegrin and metalloproteinase with thrombospondin motifs 8-like (LOC100518855), mRNA /cds=p(1,3060) /gb=XM_003130083 /gi=311264362 /ug=Ssc.48738 /len=3671"	GO:0031012//extracellular matrix	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0015114//phosphate transmembrane transporter activity;GO:0005539//glycosaminoglycan binding;GO:0005102//receptor binding	GO:0019538//protein metabolic process;GO:0008283//cell proliferation	gi|311264363|ref|XP_003130131.1|/0/PREDICTED: LOW QUALITY PROTEIN: A disintegrin and metalloproteinase with thrombospondin motifs 8-like [Sus scrofa]
gnl|UG|Ssc#S58310011	2	0.58	2	0.57	2	0.6	"PREDICTED: Sus scrofa glioma pathogenesis-related protein 1-like (LOC100523551), mRNA /cds=p(297,1106) /gb=XM_003126387 /gi=311255951 /ug=Ssc.20464 /len=1126"	GO:0031224//intrinsic to membrane	-	GO:0006629//lipid metabolic process	gi|311255952|ref|XP_003126435.1|/1.3393e-136/PREDICTED: glioma pathogenesis-related protein 1-like [Sus scrofa]
gnl|UG|Ssc#S29460318	24	6.91	8	2.29	0	0	"POSM0605010_G20R porcine skeletal muscle cDNA library (PoSM) Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DV899023 /gi=82924534 /ug=Ssc.87961 /len=466"	-	-	-	-
gnl|UG|Ssc#S27602195	8	2.3	23	6.57	7	2.1	"EST-AR152A08 Porcine Peripheral Blood Cell cDNA library Sus scrofa cDNA clone AR152A08, mRNA sequence /clone=AR152A08 /gb=DV227522 /gi=77595922 /ug=Ssc.86187 /len=718"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0004725//protein tyrosine phosphatase activity;GO:0004871//signal transducer activity;GO:0019904//protein domain specific binding	GO:0009888//tissue development;GO:0006470//protein dephosphorylation;GO:0023052//signaling	"gi|296488553|gb|DAA30666.1|/7.35138e-133/protein tyrosine phosphatase, non-receptor type 12 [Bos taurus]"
gnl|UG|Ssc#S58304488	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase RNF167-like (LOC100512310), mRNA /cds=p(470,1522) /gb=XM_003131906 /gi=311268236 /ug=Ssc.20226 /len=2031"	GO:0031224//intrinsic to membrane;GO:0044424//intracellular part	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination;GO:0051726//regulation of cell cycle	gi|311268237|ref|XP_003131954.1|/1.02662e-173/PREDICTED: e3 ubiquitin-protein ligase RNF167-like [Sus scrofa]
gnl|UG|Ssc#S38675418	2	0.58	0	0	0	0	"Sus scrofa ERCC2 mRNA for DNA-repair protein complementing XP-D cells, partial cds /cds=p(1,2272) /gb=AB271961 /gi=146741361 /ug=Ssc.53632 /len=2304"	GO:0005667//transcription factor complex;GO:0005819//spindle	"GO:0004674//protein serine/threonine kinase activity;GO:0030528//transcription regulator activity;GO:0003678//DNA helicase activity;GO:0032559;GO:0042623//ATPase activity, coupled;GO:0005515//protein binding;GO:0003676//nucleic acid binding;GO:0051540;GO:0043169//cation binding"	"GO:0051704;GO:0006915//apoptosis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0022010//central nervous system myelination;GO:0043009//chordate embryonic development;GO:0043062//extracellular structure organization;GO:0045935;GO:0009207;GO:0001503//ossification;GO:0048863//stem cell differentiation;GO:0022405//hair cycle process;GO:0009411//response to UV;GO:0012502//induction of programmed cell death;GO:0040007//growth;GO:0007050//cell cycle arrest;GO:0006353//transcription termination, DNA-dependent;GO:0051099//positive regulation of binding;GO:0006354//transcription elongation, DNA-dependent;GO:0009913//epidermal cell differentiation;GO:0048469//cell maturation;GO:0006397//mRNA processing;GO:0006289//nucleotide-excision repair;GO:0006352//transcription initiation, DNA-dependent"	gi|146741362|dbj|BAF62336.1|/0/DNA-repair protein complementing XP-D cells [Sus scrofa]
gnl|UG|Ssc#S58305926	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa golgi-associated, gamma adaptin ear containing, ARF binding protein 2, transcript variant 2 (GGA2), mRNA /cds=p(38,1894) /gb=XM_003130471 /gi=311265163 /ug=Ssc.19325 /len=2913"	GO:0030135//coated vesicle;GO:0044431//Golgi apparatus part;GO:0031090//organelle membrane;GO:0030119//AP-type membrane coat adaptor complex	GO:0031267//small GTPase binding	GO:0015031//protein transport	gi|311265164|ref|XP_003130519.1|/0/PREDICTED: ADP-ribosylation factor-binding protein GGA2-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58303311	8	2.3	2	0.57	7	2.1	"PREDICTED: Sus scrofa zinc finger MIZ domain-containing protein 1-like (LOC100522760), mRNA /cds=p(1,3201) /gb=XM_003133085 /gi=311271426 /ug=Ssc.28912 /len=3754"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding	GO:0048514//blood vessel morphogenesis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0043009//chordate embryonic development;GO:0040007//growth;GO:0009887//organ morphogenesis;GO:0030154//cell differentiation;GO:0007568//aging;GO:0008284//positive regulation of cell proliferation;GO:0007028//cytoplasm organization	gi|311271427|ref|XP_003133133.1|/0/PREDICTED: zinc finger MIZ domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58309418	0	0	0	0	0	0	"PREDICTED: Sus scrofa iroquois-class homeodomain protein IRX-3-like (LOC100518611), mRNA /cds=p(321,1829) /gb=XM_003126981 /gi=311257250 /ug=Ssc.9287 /len=2184"	GO:0044424//intracellular part	GO:0030528//transcription regulator activity	GO:0048496//maintenance of organ identity;GO:0007417//central nervous system development;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0045597//positive regulation of cell differentiation;GO:0039008;GO:0039017;GO:0003002//regionalization	gi|311257251|ref|XP_003127029.1|/4.18961e-104/PREDICTED: LOW QUALITY PROTEIN: iroquois-class homeodomain protein IRX-3-like [Sus scrofa]
gnl|UG|Ssc#S21656163	17	4.89	0	0	8	2.4	"Sus scrofa ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A (ATP6V1A), mRNA /cds=p(34,1890) /gb=NM_001004042 /gi=51592132 /ug=Ssc.118 /len=2098"	GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane;GO:0033176;GO:0044444//cytoplasmic part	GO:0019829//cation-transporting ATPase activity;GO:0015078//hydrogen ion transmembrane transporter activity;GO:0032559	"GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0015031//protein transport;GO:0009207;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0015986//ATP synthesis coupled proton transport;GO:0006875//cellular metal ion homeostasis"	gi|51592133|ref|NP_001004042.1|/0/V-type proton ATPase catalytic subunit A [Sus scrofa]
gnl|UG|Ssc#S18303622	0	0	0	0	0	0	"BP441284 full-length enriched swine cDNA library, adult liver Sus scrofa cDNA clone LVR010040A05 5', mRNA sequence /clone=LVR010040A05 /clone_end=5' /gb=BP441284 /gi=40431351 /ug=Ssc.2041 /len=861"	GO:0031981//nuclear lumen	GO:0003712//transcription cofactor activity;GO:0046914//transition metal ion binding	"GO:0006915//apoptosis;GO:0006351//transcription, DNA-dependent"	gi|126339502|ref|XP_001362223.1|/5.50635e-30/PREDICTED: hypothetical protein [Monodelphis domestica]
gnl|UG|Ssc#S58306096	17	4.89	4	1.14	9	2.7	"PREDICTED: Sus scrofa HLA-B associated transcript 2-like 2 (BAT2L2), mRNA /cds=p(1,2481) /gb=XM_003130305 /gi=311264814 /ug=Ssc.29547 /len=4161"	-	-	-	gi|311264815|ref|XP_003130353.1|/0/PREDICTED: protein BAT2-like 2-like [Sus scrofa]
gnl|UG|Ssc#S55318971	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:UTR010023E01, expressed in uterus /gb=AK352199 /gi=288785913 /ug=Ssc.47308 /len=4081"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003677//DNA binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent;GO:0032501//multicellular organismal process"	gi|167908801|ref|NP_001108146.1|/0/teashirt homolog 2 [Sus scrofa]
gnl|UG|Ssc#S58308499	67	19.29	36	10.29	27	8.11	"PREDICTED: Sus scrofa polypeptide N-acetylgalactosaminyltransferase 1-like (LOC100519551), mRNA /cds=p(1,1680) /gb=XM_003127898 /gi=311259123 /ug=Ssc.14134 /len=3766"	GO:0031224//intrinsic to membrane;GO:0000139//Golgi membrane	GO:0046914//transition metal ion binding;GO:0008376//acetylgalactosaminyltransferase activity;GO:0030246//carbohydrate binding	GO:0006493//protein O-linked glycosylation	gi|311259124|ref|XP_003127946.1|/0/PREDICTED: polypeptide N-acetylgalactosaminyltransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S46888472	6	1.73	0	0	9	2.7	"Sus scrofa solute carrier family 30 member 4 (slc30A4) mRNA, complete cds /cds=p(48,1337) /gb=EU835903 /gi=194293703 /ug=Ssc.73589 /len=1456"	GO:0031224//intrinsic to membrane;GO:0005768//endosome;GO:0031410//cytoplasmic vesicle;GO:0031090//organelle membrane	GO:0046915//transition metal ion transmembrane transporter activity	GO:0010038//response to metal ion;GO:0006829//zinc ion transport;GO:0033273//response to vitamin;GO:0007589//body fluid secretion;GO:0032879//regulation of localization	gi|195972995|ref|NP_001124444.1|/0/zinc transporter 4 [Sus scrofa]
gnl|UG|Ssc#S40551206	2	0.58	5	1.43	0	0	"rtes17_l5r1.y1 tes Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW637919 /gi=183104983 /ug=Ssc.90599 /len=429"	GO:0005913//cell-cell adherens junction;GO:0019897//extrinsic to plasma membrane;GO:0031252//cell leading edge;GO:0005856//cytoskeleton;GO:0030141//stored secretory granule	GO:0050839//cell adhesion molecule binding;GO:0003779//actin binding	GO:0007043//cell-cell junction assembly;GO:0045597//positive regulation of cell differentiation;GO:0007409//axonogenesis;GO:0042476//odontogenesis;GO:0007405//neuroblast proliferation;GO:0008406//gonad development;GO:0022602//ovulation cycle process;GO:0048545//response to steroid hormone stimulus;GO:0071310//cellular response to organic substance;GO:0051259//protein oligomerization;GO:0006915//apoptosis;GO:0008589//regulation of smoothened signaling pathway	gi|414982|gb|AAA18949.1|/1.44776e-31/alpha2(E)-catenin [Homo sapiens]
gnl|UG|Ssc#S58303138	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa methylmalonic aciduria and homocystinuria type D homolog, mitochondrial-like (LOC100521690), mRNA /cds=p(159,1049) /gb=XM_003133258 /gi=311272112 /ug=Ssc.2471 /len=2187"	GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|311272113|ref|XP_003133306.1|/2.49925e-165/PREDICTED: methylmalonic aciduria and homocystinuria type D homolog, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58309171	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa interferon regulatory factor 2-binding protein 1-like (LOC100512233), mRNA /cds=p(363,2117) /gb=XM_003127228 /gi=311257750 /ug=Ssc.47911 /len=2518"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0010467//gene expression	gi|311257751|ref|XP_003127276.1|/0/PREDICTED: interferon regulatory factor 2-binding protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46877160	8	2.3	12	3.43	22	6.61	"PREDICTED: Sus scrofa adducin 3 (gamma), transcript variant 1 (ADD3), mRNA /cds=p(326,2446) /gb=XM_001924738 /gi=311271822 /ug=Ssc.12129 /len=4434"	GO:0000228//nuclear chromosome;GO:0000267//cell fraction;GO:0030054//cell junction;GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0008092//cytoskeletal protein binding;GO:0019901//protein kinase binding;GO:0005198//structural molecule activity	GO:0042221//response to chemical stimulus	gi|194042010|ref|XP_001924773.1|/0/PREDICTED: gamma-adducin isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58313310	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa scaffold attachment factor B2 (SAFB2), mRNA /cds=p(153,2807) /gb=XM_003123106 /gi=311248433 /ug=Ssc.24977 /len=3044"	-	GO:0005488//binding	-	gi|311248434|ref|XP_003123154.1|/0/PREDICTED: scaffold attachment factor B2-like [Sus scrofa]
gnl|UG|Ssc#S35169857	70	20.15	18	5.15	68	20.44	"Sus scrofa mRNA, clone:LNG010105B03, expressed in lung /gb=AK232217 /gi=115549982 /ug=Ssc.11019 /len=1298"	GO:0043234//protein complex;GO:0031227//intrinsic to endoplasmic reticulum membrane;GO:0042598//vesicular fraction	GO:0043021//ribonucleoprotein binding;GO:0016787//hydrolase activity	GO:0051605//protein maturation by peptide bond cleavage;GO:0030073//insulin secretion;GO:0015980//energy derivation by oxidation of organic compounds	gi|301767176|ref|XP_002919039.1|/5.06425e-61/PREDICTED: signal peptidase complex subunit 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S21579147	14	4.03	17	4.86	21	6.31	"UMC-pd6end1-007-b04 Endometrium gilt D6 of estrous cycle pd6end Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO992107 /gi=51351381 /ug=Ssc.86640 /len=367"	-	-	-	-
gnl|UG|Ssc#S58303903	103	29.65	102	29.16	74	22.24	"PREDICTED: Sus scrofa muscleblind-like protein 1-like, transcript variant 3 (LOC100525306), mRNA /cds=p(926,2071) /gb=XM_003132495 /gi=311269558 /ug=Ssc.1081 /len=5515"	GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0003723//RNA binding;GO:0046914//transition metal ion binding	"GO:0042692//muscle cell differentiation;GO:0000380//alternative nuclear mRNA splicing, via spliceosome;GO:0010468//regulation of gene expression;GO:0043009//chordate embryonic development;GO:0000245//spliceosome assembly;GO:0048513//organ development;GO:0014706//striated muscle tissue development;GO:0035108//limb morphogenesis"	gi|26006163|dbj|BAC41424.1|/2.39011e-173/mKIAA0428 protein [Mus musculus]
gnl|UG|Ssc#S35165227	19	5.47	15	4.29	24	7.21	"Sus scrofa mRNA, clone:LVRM10162E03, expressed in liver /gb=AK233509 /gi=115554499 /ug=Ssc.26703 /len=1451"	-	-	-	gi|122138647|sp|Q32KT0.1|CP087_BOVIN/3.45066e-61/RecName: Full=UPF0547 protein C16orf87 homolog 
gnl|UG|Ssc#S6068927	5	1.44	0	0	2	0.6	"AR070H10iSPAH10S Infected Porcine Spleen cDNA library Sus scrofa cDNA, mRNA sequence /gb=BI326823 /gi=15416526 /ug=Ssc.81825 /len=497"	GO:0000153//cytoplasmic ubiquitin ligase complex	GO:0016790//thiolester hydrolase activity;GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005102//receptor binding;GO:0019783//small conjugating protein-specific protease activity;GO:0032182//small conjugating protein binding	GO:0016192//vesicle-mediated transport;GO:0048870//cell motility;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0019941//modification-dependent protein catabolic process;GO:0006935//chemotaxis;GO:0016579//protein deubiquitination	gi|297278990|ref|XP_002808266.1|/1.58265e-73/PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 33-like [Macaca mulatta]
gnl|UG|Ssc#S40822166	3	0.86	4	1.14	0	0	"Sus scrofa tumor necrosis factor-alpha-converting enzyme (TACE) mRNA, complete cds /cds=p(172,2661) /gb=EU113218 /gi=157043064 /ug=Ssc.19668 /len=3181"	GO:0005856//cytoskeleton;GO:0016021//integral to membrane;GO:0001726//ruffle;GO:0005924//cell-substrate adherens junction	GO:0005126//cytokine receptor binding;GO:0004175//endopeptidase activity;GO:0019904//protein domain specific binding;GO:0046914//transition metal ion binding	GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0031657;GO:0016049//cell growth;GO:0006509//membrane protein ectodomain proteolysis;GO:0044319;GO:0055094//response to lipoprotein stimulus;GO:0030217//T cell differentiation;GO:0001819//positive regulation of cytokine production;GO:0002690//positive regulation of leukocyte chemotaxis;GO:0045741//positive regulation of epidermal growth factor receptor activity;GO:0043066//negative regulation of apoptosis;GO:0002237//response to molecule of bacterial origin;GO:0008283//cell proliferation;GO:0007155//cell adhesion;GO:0002444;GO:0001818//negative regulation of cytokine production;GO:0002460//adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	gi|157043065|gb|ABV02066.1|/0/tumor necrosis factor-alpha-converting enzyme [Sus scrofa]
gnl|UG|Ssc#S35169591	106	30.52	190	54.31	41	12.32	"Sus scrofa mRNA, clone:OVRM10109E04, expressed in ovary /gb=AK235727 /gi=115550248 /ug=Ssc.51863 /len=962"	GO:0015629//actin cytoskeleton	GO:0003779//actin binding	GO:0008154//actin polymerization or depolymerization	gi|301779329|ref|XP_002925089.1|/5.70277e-90/PREDICTED: tubulin monoglycylase TTLL3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58314445	0	0	0	0	0	0	"PREDICTED: Sus scrofa transmembrane channel-like 1 (TMC1), partial mRNA /cds=p(1,2405) /gb=XM_003121957 /gi=311245909 /ug=Ssc.95725 /len=2405"	GO:0031224//intrinsic to membrane	-	GO:0050954//sensory perception of mechanical stimulus	"gi|311245910|ref|XP_003122005.1|/0/PREDICTED: transmembrane channel-like protein 1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58314418	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa phosphatidylinositol glycan anchor biosynthesis, class O (PIGO), mRNA /cds=p(1,3396) /gb=XM_003121980 /gi=311245973 /ug=Ssc.3830 /len=3479"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044425//membrane part	"GO:0005488//binding;GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0006506//GPI anchor biosynthetic process	gi|311245974|ref|XP_003122028.1|/0/PREDICTED: GPI ethanolamine phosphate transferase 3-like [Sus scrofa]
gnl|UG|Ssc#S46876627	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa ubiquitin specific peptidase 30 (USP30), mRNA /cds=p(101,1654) /gb=XM_001929284 /gi=311270803 /ug=Ssc.30827 /len=3776"	GO:0031224//intrinsic to membrane;GO:0031966//mitochondrial membrane	GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0019941//modification-dependent protein catabolic process	gi|194043115|ref|XP_001929319.1|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 30 [Sus scrofa]
gnl|UG|Ssc#S34506830	0	0	2	0.57	0	0	"DB806991 full-length enriched swine cDNA library, adult lung Sus scrofa cDNA 3', mRNA sequence /clone=LNG010024F07 /clone_end=3' /gb=DB806991 /gi=112776637 /ug=Ssc.58290 /len=810"	GO:0043234//protein complex	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0000989//transcription factor binding transcription factor activity	GO:0014020;GO:0045596//negative regulation of cell differentiation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0043010//camera-type eye development;GO:0007420//brain development	gi|224057485|ref|XP_002195837.1|/2.63383e-31/PREDICTED: LIM domain only 4 [Taeniopygia guttata]
gnl|UG|Ssc#S58308299	0	0	13	3.72	4	1.2	"PREDICTED: Sus scrofa peptidyl-prolyl cis-trans isomerase H-like, transcript variant 3 (LOC100523448), mRNA /cds=p(35,568) /gb=XM_003128100 /gi=311259531 /ug=Ssc.27204 /len=878"	GO:0030532//small nuclear ribonucleoprotein complex;GO:0016604//nuclear body	GO:0008144//drug binding;GO:0016859//cis-trans isomerase activity	GO:0044267//cellular protein metabolic process;GO:0000377;GO:0065003	gi|297665298|ref|XP_002811007.1|/4.89219e-106/PREDICTED: peptidyl-prolyl cis-trans isomerase H-like [Pongo abelii]
gnl|UG|Ssc#S40588179	4	1.15	2	0.57	4	1.2	"rvin025_k12.y1 vin Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW674892 /gi=183086548 /ug=Ssc.29601 /len=697"	-	-	-	-
gnl|UG|Ssc#S50207049	4	1.15	11	3.14	7	2.1	"susfleck_AF_N_11_B01 SUSFLECK Abdominal Fat Normalized Sus scrofa cDNA clone 11_B01, mRNA sequence /clone=11_B01 /gb=FD638885 /gi=221028086 /ug=Ssc.17585 /len=777"	-	-	-	gi|149723247|ref|XP_001487914.1|/1.27613e-104/PREDICTED: leucine rich repeat containing 45 [Equus caballus]
gnl|UG|Ssc#S35169013	171	49.23	104	29.73	117	35.16	"Sus scrofa mRNA, clone:OVRM10122G10, expressed in ovary /gb=AK235887 /gi=115550812 /ug=Ssc.6568 /len=1252"	GO:0031981//nuclear lumen	-	-	gi|62460408|ref|NP_001014854.1|/0/WD repeat-containing protein 74 [Bos taurus]
gnl|UG|Ssc#S35166895	46	13.24	61	17.44	40	12.02	"Sus scrofa mRNA, clone:THY010103H03, expressed in thymus /gb=AK239438 /gi=115552844 /ug=Ssc.102 /len=2290"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427;GO:0000267//cell fraction;GO:0008287//protein serine/threonine phosphatase complex;GO:0005856//cytoskeleton;GO:0044444//cytoplasmic part	GO:0004721//phosphoprotein phosphatase activity;GO:0046983//protein dimerization activity;GO:0019888//protein phosphatase regulator activity	GO:0042221//response to chemical stimulus;GO:0007155//cell adhesion;GO:0016055//Wnt receptor signaling pathway;GO:0042503//tyrosine phosphorylation of Stat3 protein;GO:0006396//RNA processing;GO:0065003;GO:0022402//cell cycle process;GO:0006915//apoptosis;GO:0012502//induction of programmed cell death;GO:0046519;GO:0016049//cell growth;GO:0006470//protein dephosphorylation;GO:0006260//DNA replication;GO:0000165//MAPKKK cascade;GO:0050793//regulation of developmental process	"gi|259090165|pdb|3FGA|A/0/Chain A, Structural Basis Of Pp2a And Sgo Interaction"
gnl|UG|Ssc#S35165722	1103	317.56	452	129.2	993	298.42	"Sus scrofa mRNA, clone:LVRM10103G03, expressed in liver /gb=AK233213 /gi=115554004 /ug=Ssc.20897 /len=2314"	GO:0031010;GO:0031519//PcG protein complex;GO:0070822//Sin3-type complex	"GO:0042623//ATPase activity, coupled;GO:0019899//enzyme binding"	"GO:0006259//DNA metabolic process;GO:0043486//histone exchange;GO:0006351//transcription, DNA-dependent;GO:0008283//cell proliferation"	gi|297265450|ref|XP_001090071.2|/0/PREDICTED: histone-binding protein RBBP4 isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S35165213	4	1.15	4	1.14	2	0.6	"Sus scrofa mRNA, clone:LVRM10165G12, expressed in liver /gb=AK233523 /gi=115554513 /ug=Ssc.56765 /len=1545"	GO:0043231//intracellular membrane-bounded organelle	GO:0019144//ADP-sugar diphosphatase activity;GO:0017110//nucleoside-diphosphatase activity	GO:0009181//purine ribonucleoside diphosphate catabolic process	"gi|301755582|ref|XP_002913631.1|/1.67829e-170/PREDICTED: ADP-ribose pyrophosphatase, mitochondrial-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58314942	3	0.86	2	0.57	0	0	"PREDICTED: Sus scrofa zinc finger protein 609 (ZNF609), mRNA /cds=p(118,4353) /gb=XM_003121465 /gi=311244587 /ug=Ssc.23912 /len=4353"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	-	gi|311244588|ref|XP_003121513.1|/0/PREDICTED: zinc finger protein 609-like [Sus scrofa]
gnl|UG|Ssc#S35170901	3	0.86	2	0.57	6	1.8	"Sus scrofa mRNA, clone:OVRM10070G06, expressed in ovary /gb=AK235341 /gi=115548938 /ug=Ssc.49849 /len=2012"	GO:0044424//intracellular part;GO:0032991//macromolecular complex	GO:0003676//nucleic acid binding	-	gi|114587170|ref|XP_001170874.1|/0/PREDICTED: poly(rC) binding protein 4 isoform 5 [Pan troglodytes]
gnl|UG|Ssc#S55325256	357	102.78	462	132.06	210	63.11	"Sus scrofa mRNA, clone:PTG010062F07, expressed in pituitary gland /gb=AK349395 /gi=288779570 /ug=Ssc.4306 /len=2115"	-	-	-	gi|194206224|ref|XP_001916023.1|/0/PREDICTED: mesoderm development candidate 1 [Equus caballus]
gnl|UG|Ssc#S58304803	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa c-Jun-amino-terminal kinase-interacting protein 4-like (LOC100518147), partial mRNA /cds=p(178,918) /gb=XM_003131597 /gi=311267588 /ug=Ssc.77478 /len=918"	GO:0031224//intrinsic to membrane;GO:0030141//stored secretory granule	GO:0051019//mitogen-activated protein kinase binding;GO:0008092//cytoskeletal protein binding	GO:0032091//negative regulation of protein binding;GO:0045597//positive regulation of cell differentiation;GO:0051259//protein oligomerization;GO:0016197//endosome transport;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0048232//male gamete generation;GO:0042692//muscle cell differentiation;GO:0016477//cell migration;GO:0000187//activation of MAPK activity	gi|71891762|dbj|BAA25442.3|/1.5199e-129/KIAA0516 protein [Homo sapiens]
gnl|UG|Ssc#S21546482	10	2.88	7	2	2	0.6	"UMC-pnatal4-016-h10 Perinatal ovary pnatal Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO954983 /gi=51332046 /ug=Ssc.86263 /len=277"	-	-	-	-
gnl|UG|Ssc#S58308946	715	205.85	755	215.82	799	240.12	"PREDICTED: Sus scrofa ubiquitin-conjugating enzyme E2 S-like, transcript variant 1 (LOC100512787), mRNA /cds=p(184,855) /gb=XM_003127441 /gi=311258208 /ug=Ssc.24422 /len=988"	GO:0000152//nuclear ubiquitin ligase complex	GO:0019787//small conjugating protein ligase activity;GO:0032559	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0010993//regulation of ubiquitin homeostasis;GO:0000209//protein polyubiquitination;GO:0000087//M phase of mitotic cell cycle;GO:0051443//positive regulation of ubiquitin-protein ligase activity	gi|345829|pir||B42856/6.1652e-95/ubiquitin carrier protein E2 - human
gnl|UG|Ssc#S20116759	7	2.02	3	0.86	6	1.8	"Sus scrofa solute carrier family 12 (potassium/chloride transporters), member 4 (SLC12A4), mRNA /cds=p(37,3297) /gb=NM_213949 /gi=47522727 /ug=Ssc.4097 /len=3351"	GO:0016021//integral to membrane;GO:0005626//insoluble fraction	GO:0015377//cation:chloride symporter activity	GO:0015698//inorganic anion transport;GO:0019725//cellular homeostasis;GO:0030001//metal ion transport	gi|47522728|ref|NP_999114.1|/0/solute carrier family 12 member 4 [Sus scrofa]
gnl|UG|Ssc#S35169203	5	1.44	0	0	0	0	"Sus scrofa mRNA, clone:LVR010050H07, expressed in liver /gb=AK232466 /gi=115550636 /ug=Ssc.45827 /len=2501"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0004842//ubiquitin-protein ligase activity	GO:0016567//protein ubiquitination	gi|194044397|ref|XP_001925882.1|/0/PREDICTED: RING finger protein 37 [Sus scrofa]
gnl|UG|Ssc#S35174042	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVR010030A04, expressed in ovary /gb=AK234226 /gi=115545793 /ug=Ssc.39562 /len=1154"	-	-	-	-
gnl|UG|Ssc#S39998297	12	3.45	4	1.14	5	1.5	"recc2806c_j23.y1 ecc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW093206 /gi=181354838 /ug=Ssc.67072 /len=404"	-	-	-	-
gnl|UG|Ssc#S35166288	2	0.58	3	0.86	2	0.6	"Sus scrofa mRNA, clone:OVRM10212C04, expressed in ovary /gb=AK236653 /gi=115553450 /ug=Ssc.35001 /len=1386"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0019900//kinase binding;GO:0030295//protein kinase activator activity;GO:0032559	GO:0012501//programmed cell death;GO:0001934//positive regulation of protein phosphorylation;GO:0045860//positive regulation of protein kinase activity	gi|296491315|gb|DAA33378.1|/3.12717e-72/Serine/threonine-protein kinase PAK 2-like isoform 2 [Bos taurus]
gnl|UG|Ssc#S58304913	8	2.3	2	0.57	10	3.01	"PREDICTED: Sus scrofa retinoic acid receptor alpha, transcript variant 1 (LOC396709), mRNA /cds=p(434,1813) /gb=XM_003131473 /gi=311267361 /ug=Ssc.15829 /len=1855"	-	-	-	-
gnl|UG|Ssc#S46875751	9	2.59	2	0.57	6	1.8	"PREDICTED: Sus scrofa THO complex 2 (THOC2), mRNA /cds=p(23,4804) /gb=XM_001924331 /gi=311276905 /ug=Ssc.930 /len=4819"	GO:0000346//transcription export complex	GO:0003676//nucleic acid binding	GO:0006406//mRNA export from nucleus;GO:0006396//RNA processing	gi|311276906|ref|XP_001924366.2|/0/PREDICTED: THO complex subunit 2-like [Sus scrofa]
gnl|UG|Ssc#S35172918	46	13.24	5	1.43	29	8.72	"Sus scrofa mRNA, clone:UTR010098F11, expressed in uterus /gb=AK240563 /gi=115546917 /ug=Ssc.3402 /len=1089"	-	-	-	-
gnl|UG|Ssc#S58305896	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa hypothetical protein LOC100518856 (LOC100518856), mRNA /cds=p(1,1257) /gb=XM_003130516 /gi=311265223 /ug=Ssc.94933 /len=1257"	GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0003676//nucleic acid binding;GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation;GO:0065003	gi|311265224|ref|XP_003130564.1|/0/PREDICTED: hypothetical protein LOC100518856 [Sus scrofa]
gnl|UG|Ssc#S58314814	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa protein Mis18-beta-like (LOC100516409), mRNA /cds=p(42,557) /gb=XM_003121583 /gi=311244951 /ug=Ssc.24992 /len=1725"	GO:0044427;GO:0016604//nuclear body	GO:0005488//binding	GO:0007049//cell cycle;GO:0043486//histone exchange	gi|311244952|ref|XP_003121631.1|/8.04432e-84/PREDICTED: protein Mis18-beta-like [Sus scrofa]
gnl|UG|Ssc#S58306183	5	1.44	2	0.57	2	0.6	"PREDICTED: Sus scrofa cyclin D binding myb-like transcription factor 1 (DMTF1), mRNA /cds=p(231,2519) /gb=XM_003130208 /gi=311264636 /ug=Ssc.58090 /len=4125"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|311264637|ref|XP_003130256.1|/0/PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Sus scrofa]
gnl|UG|Ssc#S58304194	53	15.26	10	2.86	29	8.72	"PREDICTED: Sus scrofa glutaminyl-tRNA synthetase-like (LOC100525836), mRNA /cds=p(63,2390) /gb=XM_003132203 /gi=311268890 /ug=Ssc.30055 /len=2477"	GO:0044429//mitochondrial part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	gi|311268891|ref|XP_003132251.1|/0/PREDICTED: glutaminyl-tRNA synthetase-like [Sus scrofa]
gnl|UG|Ssc#S55325976	58	16.7	149	42.59	29	8.72	"Sus scrofa mRNA, clone:OVRT10031A01, expressed in ovary /gb=AK348675 /gi=288778850 /ug=Ssc.2856 /len=1059"	GO:0043231//intracellular membrane-bounded organelle	GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0012501//programmed cell death;GO:0006796//phosphate metabolic process;GO:0010468//regulation of gene expression;GO:0007067//mitosis;GO:0001701//in utero embryonic development;GO:0006464//protein modification process	gi|301778034|ref|XP_002924429.1|/1.39223e-164/PREDICTED: cell division protein kinase 11-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35170155	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:LNG010058E01, expressed in lung /gb=AK231963 /gi=115549684 /ug=Ssc.31986 /len=1518"	-	-	-	gi|194037229|ref|XP_001925478.1|/2.9544e-103/PREDICTED: UPF0193 protein EVG1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58303342	56	16.12	76	21.72	32	9.62	"PREDICTED: Sus scrofa vacuolar protein sorting 26, transcript variant 2 (LOC100155086), mRNA /cds=p(245,1327) /gb=XM_003133054 /gi=311271302 /ug=Ssc.2395 /len=3188"	GO:0012505//endomembrane system;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0022892	GO:0016197//endosome transport	gi|311271303|ref|XP_003133102.1|/0/PREDICTED: vacuolar protein sorting-associated protein 26A isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35173212	39	11.23	59	16.87	17	5.11	"Sus scrofa mRNA, clone:OVR010067A09, expressed in ovary /gb=AK234461 /gi=115546623 /ug=Ssc.8461 /len=1925"	GO:0005924//cell-substrate adherens junction;GO:0016604//nuclear body	GO:0003723//RNA binding	GO:0050896//response to stimulus;GO:0012501//programmed cell death;GO:0006396//RNA processing	gi|296202459|ref|XP_002748469.1|/8.24148e-125/PREDICTED: luc7-like protein 3-like [Callithrix jacchus]
gnl|UG|Ssc#S58311818	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa poly(A)-specific ribonuclease PARN-like (LOC100515887), mRNA /cds=p(1,1581) /gb=XM_003124583 /gi=311251477 /ug=Ssc.43346 /len=2566"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0003729//mRNA binding;GO:0000175//3'-5'-exoribonuclease activity	"GO:0007276//gamete generation;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|311251478|ref|XP_003124631.1|/0/PREDICTED: poly(A)-specific ribonuclease PARN-like [Sus scrofa]
gnl|UG|Ssc#S46880788	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa nidogen 2 (osteonidogen) (NID2), mRNA /cds=p(1,3882) /gb=XM_001926264 /gi=194034449 /ug=Ssc.1053 /len=3882"	GO:0044464//cell part;GO:0005578//proteinaceous extracellular matrix	GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0006464//protein modification process;GO:0031589//cell-substrate adhesion	gi|194034450|ref|XP_001926299.1|/0/PREDICTED: nidogen-2 [Sus scrofa]
gnl|UG|Ssc#S55844926	6	1.73	7	2	3	0.9	"Sus scrofa unc-45 homolog A (C. elegans) (UNC45A), mRNA /cds=p(1,2835) /gb=NM_001185069 /gi=297307134 /ug=Ssc.6920 /len=3197"	GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0048513//organ development;GO:0048869	gi|297307135|ref|NP_001171998.1|/0/protein unc-45 homolog A [Sus scrofa]
gnl|UG|Ssc#S55327568	0	0	0	0	2	0.6	"Sus scrofa corticotropin releasing hormone binding protein (CRHBP) mRNA, complete cds /cds=p(1,969) /gb=GU373692 /gi=285818437 /ug=Ssc.63977 /len=969"	GO:0044421//extracellular region part;GO:0000267//cell fraction	GO:0017046//peptide hormone binding	GO:0022414//reproductive process;GO:0008152//metabolic process;GO:0023052//signaling;GO:0007610//behavior	gi|305855164|ref|NP_001182261.1|/0/corticotropin-releasing factor-binding protein [Sus scrofa]
gnl|UG|Ssc#S58305597	171	49.23	99	28.3	116	34.86	"PREDICTED: Sus scrofa cullin 2 (CUL2), mRNA /cds=p(1,1941) /gb=XM_003130809 /gi=311265839 /ug=Ssc.81554 /len=2383"	GO:0000151//ubiquitin ligase complex	GO:0019899//enzyme binding	GO:0006917//induction of apoptosis;GO:0051704;GO:0019941//modification-dependent protein catabolic process;GO:0008283//cell proliferation;GO:0022402//cell cycle process	gi|311265840|ref|XP_003130857.1|/0/PREDICTED: cullin-2-like [Sus scrofa]
gnl|UG|Ssc#S58308592	21	6.05	11	3.14	5	1.5	"PREDICTED: Sus scrofa microtubule-actin crosslinking factor 1, transcript variant 2 (MACF1), mRNA /cds=p(1,16371) /gb=XM_003127808 /gi=311258933 /ug=Ssc.22232 /len=17711"	GO:0043232	GO:0046872//metal ion binding;GO:0003779//actin binding;GO:0015631//tubulin binding	GO:0022402//cell cycle process	"gi|311258934|ref|XP_003127856.1|/0/PREDICTED: microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform 2 [Sus scrofa]"
gnl|UG|Ssc#S58307951	212	61.04	140	40.02	124	37.27	"PREDICTED: Sus scrofa proteasome (prosome, macropain) subunit, alpha type, 4, transcript variant 2 (PSMA4), mRNA /cds=p(140,925) /gb=XM_003128444 /gi=311260593 /ug=Ssc.30 /len=1315"	GO:0043231//intracellular membrane-bounded organelle;GO:0005839//proteasome core complex	GO:0004175//endopeptidase activity;GO:0005515//protein binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0051704"	gi|291410735|ref|XP_002721651.1|/6.60704e-133/PREDICTED: proteasome alpha 4 subunit-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S58308608	2	0.58	5	1.43	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100511087 (LOC100511087), mRNA /cds=p(198,1379) /gb=XM_003127792 /gi=311258900 /ug=Ssc.80917 /len=1379"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0008134//transcription factor binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0030518//steroid hormone receptor signaling pathway;GO:0006366//transcription from RNA polymerase II promoter"	gi|311258901|ref|XP_003127840.1|/3.77031e-86/PREDICTED: hypothetical protein LOC100511087 [Sus scrofa]
gnl|UG|Ssc#S55319546	12	3.45	24	6.86	3	0.9	"Sus scrofa mRNA, clone:THY010125B05, expressed in thymus /gb=AK352020 /gi=288785338 /ug=Ssc.48402 /len=1714"	GO:0043231//intracellular membrane-bounded organelle	GO:0004672//protein kinase activity;GO:0032559	GO:0035556//intracellular signal transduction;GO:0006464//protein modification process;GO:0012502//induction of programmed cell death	gi|134085657|ref|NP_001076891.1|/0/serine/threonine-protein kinase 17A [Bos taurus]
gnl|UG|Ssc#S20937441	86	24.76	108	30.87	42	12.62	"AJ649164 CSEQRAN19 Sus scrofa cDNA clone C0003271_L18, mRNA sequence /clone=C0003271_L18 /gb=AJ649164 /gi=49326009 /ug=Ssc.74069 /len=438"	GO:0044421//extracellular region part	GO:0004871//signal transducer activity	GO:0048565//digestive tract development;GO:0043009//chordate embryonic development;GO:0002690//positive regulation of leukocyte chemotaxis;GO:0016101//diterpenoid metabolic process;GO:0045444//fat cell differentiation	gi|61740621|ref|NP_001013445.1|/1.74192e-64/retinoic acid receptor responder protein 2 [Rattus norvegicus]
gnl|UG|Ssc#S58304909	2	0.58	4	1.14	8	2.4	"PREDICTED: Sus scrofa thyroid hormone receptor alpha-like (LOC100514869), mRNA /cds=p(1,555) /gb=XM_003131510 /gi=311267369 /ug=Ssc.90831 /len=1092"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0030528//transcription regulator activity;GO:0042562//hormone binding;GO:0004879//ligand-dependent nuclear receptor activity;GO:0008134//transcription factor binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0044212//transcription regulatory region DNA binding;GO:0003727//single-stranded RNA binding;GO:0042802//identical protein binding;GO:0043565//sequence-specific DNA binding;GO:0046914//transition metal ion binding;GO:0046983//protein dimerization activity	GO:0002154;GO:0009894;GO:0007619//courtship behavior;GO:0044057;GO:0043392//negative regulation of DNA binding;GO:0016337//cell-cell adhesion;GO:0009653//anatomical structure morphogenesis;GO:0042981//regulation of apoptosis;GO:0030099//myeloid cell differentiation;GO:0010830;GO:0035270//endocrine system development;GO:0042992//negative regulation of transcription factor import into nucleus;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0009991//response to extracellular stimulus;GO:0007417//central nervous system development;GO:0030323//respiratory tube development;GO:0006950//response to stress;GO:0045924//regulation of female receptivity	gi|311267370|ref|XP_003131558.1|/8.7643e-101/PREDICTED: thyroid hormone receptor alpha-like [Sus scrofa]
gnl|UG|Ssc#S46877196	9	2.59	5	1.43	4	1.2	"PREDICTED: Sus scrofa ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) (ACTR1A), mRNA /cds=p(134,1264) /gb=XM_001928877 /gi=311271773 /ug=Ssc.20874 /len=2998"	GO:0005875//microtubule associated complex;GO:0044444//cytoplasmic part	GO:0032559	GO:0006810//transport;GO:0022402//cell cycle process	gi|5031569|ref|NP_005727.1|/0/alpha-centractin [Homo sapiens]
gnl|UG|Ssc#S35169443	33	9.5	84	24.01	22	6.61	"Sus scrofa mRNA, clone:THY010014H12, expressed in thymus /gb=AK238661 /gi=115550396 /ug=Ssc.47324 /len=1337"	GO:0016020//membrane	-	-	gi|194208388|ref|XP_001499777.2|/1.44145e-167/PREDICTED: similar to C27F2.8 [Equus caballus]
gnl|UG|Ssc#S35167712	4	1.15	4	1.14	6	1.8	"Sus scrofa mRNA, clone:THY010079B01, expressed in thymus /gb=AK239220 /gi=115552027 /ug=Ssc.31095 /len=1138"	GO:0043231//intracellular membrane-bounded organelle;GO:0000502//proteasome complex	GO:0004175//endopeptidase activity	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|194038909|ref|XP_001925798.1|/1.7769e-152/PREDICTED: proteasome subunit beta type-11-like [Sus scrofa]
gnl|UG|Ssc#S58301774	18	5.18	7	2	9	2.7	"PREDICTED: Sus scrofa putative RNA-binding protein Luc7-like 2-like (LOC100516887), mRNA /cds=p(317,1495) /gb=XM_003134619 /gi=311275294 /ug=Ssc.4727 /len=2599"	-	GO:0005515//protein binding;GO:0043169//cation binding	-	gi|291411696|ref|XP_002722120.1|/2.9106e-115/PREDICTED: LUC7-like isoform 2 [Oryctolagus cuniculus]
gnl|UG|Ssc#S46876362	39	11.23	7	2	38	11.42	"PREDICTED: Sus scrofa DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 (DDX18), mRNA /cds=p(1,2010) /gb=XM_001927604 /gi=311272172 /ug=Ssc.4682 /len=3492"	-	"GO:0003724//RNA helicase activity;GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0009207	gi|194043658|ref|XP_001927639.1|/0/PREDICTED: ATP-dependent RNA helicase DDX18-like [Sus scrofa]
gnl|UG|Ssc#S50699616	0	0	3	0.86	3	0.9	"Sus scrofa EGF-like-domain protein 8 (EGFL8) mRNA, complete cds /cds=p(86,973) /gb=EU282362 /gi=162138247 /ug=Ssc.3386 /len=1304"	-	-	-	-
gnl|UG|Ssc#S38481945	6	1.73	4	1.14	0	0	"EST-AO225E08 Alveolar macrophage from PRRSV-infected pig Sus scrofa cDNA clone AO225E08, mRNA sequence /clone=AO225E08 /gb=ES447097 /gi=146288687 /ug=Ssc.54140 /len=803"	-	-	-	-
gnl|UG|Ssc#S58310797	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa serum/glucocorticoid regulated kinase family, member 3 (SGK3), mRNA /cds=p(42,1178) /gb=XM_003125602 /gi=311253760 /ug=Ssc.70841 /len=1562"	GO:0005768//endosome;GO:0031410//cytoplasmic vesicle	GO:0004672//protein kinase activity;GO:0005543//phospholipid binding;GO:0032559	GO:0050896//response to stimulus;GO:0043066//negative regulation of apoptosis;GO:0006464//protein modification process	gi|301762008|ref|XP_002916422.1|/0/PREDICTED: serine/threonine-protein kinase Sgk3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S18311853	0	0	0	0	2	0.6	"BP449515 full-length enriched swine cDNA library, adult liver Sus scrofa cDNA clone LVRM10142B09 5', mRNA sequence /clone=LVRM10142B09 /clone_end=5' /gb=BP449515 /gi=40439582 /ug=Ssc.49646 /len=781"	-	GO:0046914//transition metal ion binding	-	gi|194217425|ref|XP_001504392.2|/2.01337e-41/PREDICTED: SET and MYND domain containing 4 [Equus caballus]
gnl|UG|Ssc#S58305949	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa SLIT-ROBO Rho GTPase-activating protein 2-like (LOC100518625), partial mRNA /cds=p(1,1098) /gb=XM_003130449 /gi=311265117 /ug=Ssc.80393 /len=1098"	GO:0019866//organelle inner membrane;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0035556//intracellular signal transduction;GO:0006935//chemotaxis;GO:0009966//regulation of signal transduction	"gi|311265118|ref|XP_003130497.1|/0/PREDICTED: SLIT-ROBO Rho GTPase-activating protein 2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S20935286	42	12.09	75	21.44	51	15.33	"AJ647009 CSEQRAN19 Sus scrofa cDNA clone C0003104_F17, mRNA sequence /clone=C0003104_F17 /gb=AJ647009 /gi=49323854 /ug=Ssc.41698 /len=458"	GO:0000315//organellar large ribosomal subunit;GO:0043231//intracellular membrane-bounded organelle	GO:0005198//structural molecule activity	GO:0010467//gene expression;GO:0012501//programmed cell death	"gi|61740619|ref|NP_001013444.1|/2.72086e-49/39S ribosomal protein L41, mitochondrial precursor [Rattus norvegicus]"
gnl|UG|Ssc#S55324407	4	1.15	2	0.57	19	5.71	"Sus scrofa mRNA, clone:SMG010023B11, expressed in submaxillary gland /gb=AK349999 /gi=288780465 /ug=Ssc.2969 /len=1144"	-	-	-	-
gnl|UG|Ssc#S35174296	26	7.49	21	6	78	23.44	"Sus scrofa mRNA, clone:AMP010021E10, expressed in alveolar macrophage /gb=AK230654 /gi=115545539 /ug=Ssc.12284 /len=2432"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0042995//cell projection;GO:0044444//cytoplasmic part	GO:0019901//protein kinase binding;GO:0004672//protein kinase activity;GO:0005543//phospholipid binding;GO:0008092//cytoskeletal protein binding;GO:0032559	GO:0032868//response to insulin stimulus;GO:0007613//memory;GO:0031346//positive regulation of cell projection organization;GO:0007632//visual behavior;GO:0006468//protein phosphorylation;GO:0043401//steroid hormone mediated signaling pathway;GO:0008104//protein localization;GO:0006915//apoptosis;GO:0048858//cell projection morphogenesis;GO:0033554//cellular response to stress;GO:0016049//cell growth;GO:0002028//regulation of sodium ion transport;GO:0031111//negative regulation of microtubule polymerization or depolymerization;GO:0007049//cell cycle;GO:0006875//cellular metal ion homeostasis	gi|301773838|ref|XP_002922337.1|/0/PREDICTED: serine/threonine-protein kinase Sgk1-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58314678	13	3.74	8	2.29	22	6.61	"PREDICTED: Sus scrofa ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like (LOC100151784), mRNA /cds=p(197,2098) /gb=XM_003121718 /gi=311245294 /ug=Ssc.4444 /len=3731"	GO:0019866//organelle inner membrane;GO:0005759//mitochondrial matrix	"GO:0043169//cation binding;GO:0008047//enzyme activator activity;GO:0042623//ATPase activity, coupled;GO:0005515//protein binding;GO:0032559"	GO:0044267//cellular protein metabolic process;GO:0006508//proteolysis;GO:0009207;GO:0051345//positive regulation of hydrolase activity	"gi|311245295|ref|XP_003121766.1|/0/PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58301996	244	70.25	117	33.44	124	37.27	"PREDICTED: Sus scrofa charged multivesicular body protein 4b-like (LOC100516767), mRNA /cds=p(1,546) /gb=XM_003134402 /gi=311274733 /ug=Ssc.12988 /len=1335"	GO:0005768//endosome	GO:0005488//binding	GO:0016192//vesicle-mediated transport	gi|311274734|ref|XP_003134450.1|/2.79517e-70/PREDICTED: charged multivesicular body protein 4b-like [Sus scrofa]
gnl|UG|Ssc#S46876861	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa nucleoporin 133kDa (NUP133), mRNA /cds=p(52,3519) /gb=XM_001928164 /gi=311271195 /ug=Ssc.82058 /len=4114"	GO:0005643//nuclear pore;GO:0044444//cytoplasmic part;GO:0000777//condensed chromosome kinetochore	GO:0005488//binding;GO:0005215//transporter activity	GO:0007498//mesoderm development;GO:0044238//primary metabolic process;GO:0015758//glucose transport;GO:0006405//RNA export from nucleus;GO:0007067//mitosis;GO:0006997//nucleus organization	gi|194042633|ref|XP_001928199.1|/0/PREDICTED: nuclear pore complex protein Nup133-like [Sus scrofa]
gnl|UG|Ssc#S20939403	2	0.58	0	0	2	0.6	"AJ651126 CSEQRAN19 Sus scrofa cDNA clone C0003277_F20, mRNA sequence /clone=C0003277_F20 /gb=AJ651126 /gi=49327971 /ug=Ssc.74113 /len=495"	GO:0044421//extracellular region part;GO:0000323//lytic vacuole;GO:0048770	GO:0008242//omega peptidase activity	GO:0009064//glutamine family amino acid metabolic process;GO:0043434//response to peptide hormone stimulus;GO:0010038//response to metal ion	gi|6978890|ref|NP_037092.1|/2.23048e-80/gamma-glutamyl hydrolase precursor [Rattus norvegicus]
gnl|UG|Ssc#S40415563	2	0.58	0	0	0	0	"rplac_13685.y1 pla Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW510170 /gi=183155986 /ug=Ssc.62983 /len=550"	GO:0005856//cytoskeleton;GO:0016020//membrane	GO:0042802//identical protein binding	GO:0007155//cell adhesion	gi|281349299|gb|EFB24883.1|/5.49587e-66/hypothetical protein PANDA_006002 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S18361208	0	0	3	0.86	0	0	"921001 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK456758 /gi=40803972 /ug=Ssc.24132 /len=806"	-	-	-	-
gnl|UG|Ssc#S46880952	50	14.4	18	5.15	38	11.42	"PREDICTED: Sus scrofa PC4 and SFRS1-interacting protein-like (LOC100157597), mRNA /cds=p(575,2167) /gb=XM_001927571 /gi=311245756 /ug=Ssc.2868 /len=3866"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	-	GO:0006310//DNA recombination;GO:0019058//viral infectious cycle	gi|297684397|ref|XP_002819831.1|/0/PREDICTED: PC4 and SFRS1-interacting protein-like [Pongo abelii]
gnl|UG|Ssc#S58308901	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa tRNA pseudouridine synthase-like 1-like (LOC100524091), mRNA /cds=p(115,1035) /gb=XM_003127494 /gi=311258298 /ug=Ssc.54796 /len=1328"	-	GO:0003676//nucleic acid binding;GO:0016866//intramolecular transferase activity	GO:0009451//RNA modification;GO:0006399//tRNA metabolic process	gi|311258299|ref|XP_003127542.1|/1.5821e-158/PREDICTED: tRNA pseudouridine synthase-like 1-like [Sus scrofa]
gnl|UG|Ssc#S58301197	4	1.15	12	3.43	4	1.2	"PREDICTED: Sus scrofa transcriptional regulator ATRX-like (LOC100514440), mRNA /cds=p(224,1192) /gb=XM_003135196 /gi=311276536 /ug=Ssc.81493 /len=1693"	GO:0000790//nuclear chromatin	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0004386//helicase activity;GO:0019904//protein domain specific binding;GO:0032559	"GO:0006305;GO:0033554//cellular response to stress;GO:0006351//transcription, DNA-dependent"	gi|301786781|ref|XP_002928805.1|/0/PREDICTED: transcriptional regulator ATRX-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58301413	6	1.73	2	0.57	0	0	"PREDICTED: Sus scrofa zinc finger protein, X-linked (ZFX), mRNA /cds=p(1,2403) /gb=XM_003134981 /gi=311276053 /ug=Ssc.9529 /len=2463"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding	-	gi|311276054|ref|XP_003135029.1|/0/PREDICTED: zinc finger X-chromosomal protein [Sus scrofa]
gnl|UG|Ssc#S58301381	233	67.08	153	43.73	322	96.77	"PREDICTED: Sus scrofa tetraspanin-7-like (LOC100526026), mRNA /cds=p(75,824) /gb=XM_003135011 /gi=311276133 /ug=Ssc.6550 /len=1795"	GO:0016021//integral to membrane	-	-	"gi|57111697|ref|XP_537996.1|/2.11817e-143/PREDICTED: similar to Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily member 2) (Cell surface glycoprotein A15) (T-cell acute lymphoblastic leukemia associated antigen 1) (TALLA-1) (Membrane component, X chromosome, surface marker 1) (CD231 antigen)... [Canis familiaris]"
gnl|UG|Ssc#S58301296	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa synaptojanin-2-like (LOC100516167), mRNA /cds=p(1,4962) /gb=XM_003135100 /gi=311276310 /ug=Ssc.14132 /len=5015"	GO:0031312;GO:0043231//intracellular membrane-bounded organelle;GO:0001726//ruffle;GO:0005874//microtubule;GO:0033267//axon part;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0034593;GO:0003676//nucleic acid binding;GO:0046030//inositol trisphosphate phosphatase activity;GO:0019904//protein domain specific binding	GO:0007417//central nervous system development;GO:0046488//phosphatidylinositol metabolic process;GO:0048311//mitochondrion distribution;GO:0046838//phosphorylated carbohydrate dephosphorylation	gi|311276311|ref|XP_003135148.1|/0/PREDICTED: synaptojanin-2-like [Sus scrofa]
gnl|UG|Ssc#S55319975	6	1.73	0	0	2	0.6	"Sus scrofa mRNA, clone:THY010088B01, expressed in thymus /gb=AK351790 /gi=288784909 /ug=Ssc.19248 /len=2673"	GO:0043234//protein complex;GO:0012505//endomembrane system;GO:0044431//Golgi apparatus part	GO:0005488//binding;GO:0022892	GO:0006996//organelle organization;GO:0048193//Golgi vesicle transport;GO:0009311//oligosaccharide metabolic process;GO:0015031//protein transport;GO:0006464//protein modification process	gi|311271185|ref|XP_001924673.2|/0/PREDICTED: conserved oligomeric Golgi complex subunit 2-like [Sus scrofa]
gnl|UG|Ssc#S55326572	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10059B09, expressed in ovary /gb=AK348079 /gi=288778254 /ug=Ssc.42197 /len=3220"	GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0016021//integral to membrane	"GO:0004871//signal transducer activity;GO:0008047//enzyme activator activity;GO:0030674//protein binding, bridging;GO:0070851//growth factor receptor binding"	GO:0048699//generation of neurons;GO:0042127//regulation of cell proliferation;GO:0007369//gastrulation;GO:0003156//regulation of organ formation;GO:0010863//positive regulation of phospholipase C activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0060442//branching involved in prostate gland morphogenesis;GO:0007420//brain development;GO:0000578//embryonic axis specification;GO:0001743//optic placode formation;GO:0003231//cardiac ventricle development;GO:0000165//MAPKKK cascade	gi|296487699|gb|DAA29812.1|/0/FRS2 protein-like [Bos taurus]
gnl|UG|Ssc#S35164276	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVR010002H11, expressed in ovary /gb=AK234063 /gi=115555450 /ug=Ssc.8477 /len=2581"	GO:0005815//microtubule organizing center;GO:0030286//dynein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	-	gi|73953654|ref|XP_867523.1|/0/PREDICTED: similar to Dynactin subunit 4 (Dynactin subunit p62) isoform 4 [Canis familiaris]
gnl|UG|Ssc#S58312787	87	25.05	9	2.57	82	24.64	"PREDICTED: Sus scrofa guanylate kinase-like (LOC100513720), mRNA /cds=p(20,679) /gb=XM_003123613 /gi=311249492 /ug=Ssc.11943 /len=927"	GO:0044444//cytoplasmic part	"GO:0016776//phosphotransferase activity, phosphate group as acceptor;GO:0032559"	GO:0009117//nucleotide metabolic process;GO:0006796//phosphate metabolic process	gi|311249493|ref|XP_003123661.1|/1.76682e-109/PREDICTED: guanylate kinase-like [Sus scrofa]
gnl|UG|Ssc#S18388477	3	0.86	0	0	3	0.9	"Sus scrofa mRNA for beta-galactosamide alpha-2,6-sialyltransferase (ST6GALNAC-IV gene) /cds=p(272,1180) /gb=AJ620652 /gi=40804569 /ug=Ssc.23781 /len=1614"	GO:0031228//intrinsic to Golgi membrane;GO:0000267//cell fraction	GO:0008373//sialyltransferase activity	GO:0006643//membrane lipid metabolic process;GO:0006464//protein modification process	"gi|47523272|ref|NP_998949.1|/1.90163e-172/alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 [Sus scrofa]"
gnl|UG|Ssc#S58313591	435	125.24	431	123.2	359	107.89	"PREDICTED: Sus scrofa mitochondrial carrier homolog 2-like (LOC100511915), mRNA /cds=p(134,1045) /gb=XM_003122806 /gi=311247866 /ug=Ssc.6054 /len=2466"	GO:0019866//organelle inner membrane;GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0051234//establishment of localization	gi|311247867|ref|XP_003122854.1|/5.23129e-175/PREDICTED: mitochondrial carrier homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S58305170	9	2.59	5	1.43	5	1.5	"PREDICTED: Sus scrofa peptidyl-tRNA hydrolase ICT1, mitochondrial-like (LOC100512432), mRNA /cds=p(965,1582) /gb=XM_003131220 /gi=311266833 /ug=Ssc.11828 /len=1833"	GO:0043231//intracellular membrane-bounded organelle;GO:0000315//organellar large ribosomal subunit	GO:0003747//translation release factor activity;GO:0004091//carboxylesterase activity	GO:0006415//translational termination	"gi|311266834|ref|XP_003131268.1|/1.79813e-113/PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S55323559	19	5.47	4	1.14	4	1.2	"Sus scrofa mRNA, clone:AMP010083C01, expressed in alveolar macrophages /gb=AK343922 /gi=288781313 /ug=Ssc.43529 /len=1963"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003677//DNA binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006355//regulation of transcription, DNA-dependent"	gi|149698224|ref|XP_001502606.1|/0/PREDICTED: E74-like factor 2 (ets domain transcription factor) isoform 3 [Equus caballus]
gnl|UG|Ssc#S35167762	5	1.44	2	0.57	0	0	"Sus scrofa mRNA, clone:THY010070A02, expressed in thymus /gb=AK239170 /gi=115551977 /ug=Ssc.26482 /len=1565"	GO:0043231//intracellular membrane-bounded organelle	GO:0003824//catalytic activity	GO:0044238//primary metabolic process;GO:0032787//monocarboxylic acid metabolic process	"gi|84370097|ref|NP_001033625.1|/4.69799e-136/enoyl-CoA hydratase domain-containing protein 2, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S35172291	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:TCH010013H06, expressed in trachea /gb=AK237926 /gi=115547544 /ug=Ssc.3048 /len=1498"	-	-	-	-
gnl|UG|Ssc#S58301954	0	0	2	0.57	4	1.2	"PREDICTED: Sus scrofa 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1-like (LOC100152497), mRNA /cds=p(1,4125) /gb=XM_003134442 /gi=311274869 /ug=Ssc.28811 /len=4489"	GO:0016020//membrane;GO:0031252//cell leading edge;GO:0042995//cell projection;GO:0044444//cytoplasmic part	GO:0004871//signal transducer activity;GO:0004629//phospholipase C activity;GO:0005102//receptor binding;GO:0046872//metal ion binding	GO:0007599//hemostasis;GO:0010631//epithelial cell migration;GO:0032234//regulation of calcium ion transport via store-operated calcium channel activity;GO:0050851//antigen receptor-mediated signaling pathway;GO:0015031//protein transport;GO:0014072;GO:0000302//response to reactive oxygen species;GO:0032957//inositol trisphosphate metabolic process;GO:0010863//positive regulation of phospholipase C activity;GO:0043009//chordate embryonic development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009628//response to abiotic stimulus;GO:0006935//chemotaxis;GO:0045765//regulation of angiogenesis;GO:0010595//positive regulation of endothelial cell migration;GO:0051704;GO:0070849//response to epidermal growth factor stimulus;GO:0006644//phospholipid metabolic process	"gi|311274870|ref|XP_003134490.1|/0/PREDICTED: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1-like [Sus scrofa]"
gnl|UG|Ssc#S55320113	28	8.06	2	0.57	43	12.92	"Sus scrofa mRNA, clone:LVR010089B04, expressed in liver /gb=AK345977 /gi=288784759 /ug=Ssc.12630 /len=3689"	GO:0048770;GO:0042598//vesicular fraction;GO:0005887//integral to plasma membrane	GO:0016791//phosphatase activity;GO:0008556//potassium-transporting ATPase activity;GO:0032559;GO:0043169//cation binding	GO:0042221//response to chemical stimulus;GO:0006704//glucocorticoid biosynthetic process;GO:0008016//regulation of heart contraction;GO:0030001//metal ion transport;GO:0009206;GO:0006942//regulation of striated muscle contraction	gi|283443670|gb|ADB19852.1|/0/Na+/K+ transporting alpha 1 polypeptide [Sus scrofa]
gnl|UG|Ssc#S35165444	839	241.55	499	142.64	800	240.42	"Sus scrofa mRNA, clone:UTR010028E04, expressed in uterus /gb=AK240077 /gi=115554282 /ug=Ssc.5454 /len=1068"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0019899//enzyme binding;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation;GO:0031331;GO:0008104//protein localization	gi|301768957|ref|XP_002919926.1|/7.711e-62/PREDICTED: hypothetical protein LOC100478075 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46876221	0	0	6	1.72	6	1.8	"PREDICTED: Sus scrofa protein kinase, interferon-inducible double stranded RNA dependent activator (PRKRA), mRNA /cds=p(181,1122) /gb=XM_001927705 /gi=311272714 /ug=Ssc.6789 /len=1673"	GO:0044444//cytoplasmic part	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0003723//RNA binding;GO:0042802//identical protein binding;GO:0030234//enzyme regulator activity"	GO:0012502//induction of programmed cell death;GO:0051707//response to other organism;GO:0042471//ear morphogenesis;GO:0006796//phosphate metabolic process;GO:0002376//immune system process;GO:0008283//cell proliferation;GO:0016246//RNA interference;GO:0006464//protein modification process	"gi|74004908|ref|XP_545545.2|/3.37583e-180/PREDICTED: similar to protein kinase, interferon-inducible double stranded RNA dependent activator [Canis familiaris]"
gnl|UG|Ssc#S35164672	12	3.45	4	1.14	2	0.6	"Sus scrofa mRNA, clone:UTR010045F02, expressed in uterus /gb=AK240253 /gi=115555054 /ug=Ssc.54281 /len=1194"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	"GO:0003995//acyl-CoA dehydrogenase activity;GO:0016628//oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"	GO:0006631//fatty acid metabolic process;GO:0035336//long-chain fatty-acyl-CoA metabolic process;GO:0006641//triglyceride metabolic process;GO:0008202//steroid metabolic process	"gi|149759489|ref|XP_001498421.1|/1.26658e-180/PREDICTED: similar to Synaptic glycoprotein SC2 (Trans-2,3-enoyl-CoA reductase) (TER) [Equus caballus]"
gnl|UG|Ssc#S55324760	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:ADR010029B08, expressed in adrenal gland /gb=AK343296 /gi=288780112 /ug=Ssc.48127 /len=1739"	-	-	-	-
gnl|UG|Ssc#S58313043	21	6.05	19	5.43	11	3.31	"PREDICTED: Sus scrofa paralemmin-3-like (LOC100513460), mRNA /cds=p(1,2124) /gb=XM_003123361 /gi=311248974 /ug=Ssc.19044 /len=2371"	-	-	-	gi|311248975|ref|XP_003123409.1|/0/PREDICTED: paralemmin-3-like [Sus scrofa]
gnl|UG|Ssc#S58301505	3	0.86	17	4.86	0	0	"PREDICTED: Sus scrofa AE binding protein 1 (AEBP1), mRNA /cds=p(1,3423) /gb=XM_003134886 /gi=311275843 /ug=Ssc.16584 /len=3701"	-	-	-	-
gnl|UG|Ssc#S46878877	162	46.64	107	30.59	144	43.28	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 2, subunit 1 alpha, transcript variant 1 (LOC100155472), mRNA /cds=p(421,1368) /gb=XM_001928339 /gi=194038444 /ug=Ssc.7498 /len=1790"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	"GO:0043021//ribonucleoprotein binding;GO:0008135//translation factor activity, nucleic acid binding"	GO:0006468//protein phosphorylation;GO:0006446//regulation of translational initiation	"gi|149737191|ref|XP_001499818.1|/6.34908e-148/PREDICTED: similar to eukaryotic translation initiation factor 2, subunit 1 alpha [Equus caballus]"
gnl|UG|Ssc#S58313361	0	0	0	0	0	0	"PREDICTED: Sus scrofa deoxyhypusine hydroxylase-like (LOC100519411), mRNA /cds=p(1,912) /gb=XM_003123042 /gi=311248331 /ug=Ssc.1317 /len=1382"	GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0004497//monooxygenase activity	GO:0018205//peptidyl-lysine modification	gi|311248332|ref|XP_003123090.1|/1.08013e-149/PREDICTED: deoxyhypusine hydroxylase-like [Sus scrofa]
gnl|UG|Ssc#S55320053	107	30.81	103	29.44	161	48.38	"Sus scrofa mRNA, clone:LVRM10012F08, expressed in liver /gb=AK346037 /gi=288784819 /ug=Ssc.16083 /len=2417"	-	-	-	-
gnl|UG|Ssc#S21544042	5	1.44	4	1.14	2	0.6	"UMC-pfeto1-007-c04 Fetal ovary pfeto Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO952643 /gi=51329626 /ug=Ssc.86218 /len=378"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0016279//protein-lysine N-methyltransferase activity	"GO:0034968//histone lysine methylation;GO:0018022//peptidyl-lysine methylation;GO:0006351//transcription, DNA-dependent;GO:0010033//response to organic substance"	gi|311268802|ref|XP_003132219.1|/6.05413e-17/PREDICTED: histone-lysine N-methyltransferase SETD2-like [Sus scrofa]
gnl|UG|Ssc#S55296845	17	4.89	2	0.57	6	1.8	"FS703105 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010079G04 5', mRNA sequence /clone=PST010079G04 /clone_end=5' /gb=FS703105 /gi=288299293 /ug=Ssc.4820 /len=893"	GO:0031224//intrinsic to membrane;GO:0031090//organelle membrane;GO:0005635//nuclear envelope;GO:0042598//vesicular fraction	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0016410//N-acyltransferase activity	"GO:0006672//ceramide metabolic process;GO:0006351//transcription, DNA-dependent"	gi|73996690|ref|XP_534805.2|/7.688e-147/PREDICTED: similar to LAG1 longevity assurance homolog 5 [Canis familiaris]
gnl|UG|Ssc#S58311312	32	9.21	83	23.73	49	14.73	"PREDICTED: Sus scrofa SERTA domain-containing protein 2-like (LOC100518606), mRNA /cds=p(184,1122) /gb=XM_003125089 /gi=311252519 /ug=Ssc.94612 /len=1887"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0005488//binding;GO:0003712//transcription cofactor activity	"GO:0016049//cell growth;GO:0006355//regulation of transcription, DNA-dependent"	gi|311252520|ref|XP_003125137.1|/2.34092e-124/PREDICTED: SERTA domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S26728925	5	1.44	6	1.72	7	2.1	"AJ939833 CSEQRAN17 Sus scrofa cDNA clone C0007306o01 3', mRNA sequence /clone=C0007306o01 /clone_end=3' /gb=AJ939833 /gi=74356649 /ug=Ssc.27671 /len=714"	-	-	-	gi|119621848|gb|EAX01443.1|/1.12482e-16/hCG2020706 [Homo sapiens]
gnl|UG|Ssc#S58313232	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa translocase of inner mitochondrial membrane 44 homolog (yeast) (TIMM44), mRNA /cds=p(61,1425) /gb=XM_003123200 /gi=311248589 /ug=Ssc.21977 /len=1877"	GO:0005743//mitochondrial inner membrane	GO:0008320//protein transmembrane transporter activity;GO:0005515//protein binding;GO:0032559	GO:0006605//protein targeting	gi|311248590|ref|XP_003123248.1|/0/PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-like [Sus scrofa]
gnl|UG|Ssc#S55322439	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:TCH010056H07, expressed in trachea /gb=AK350905 /gi=288782433 /ug=Ssc.44638 /len=1516"	-	-	-	-
gnl|UG|Ssc#S58311637	0	0	0	0	0	0	"PREDICTED: Sus scrofa cyclin-F-like (LOC100518243), mRNA /cds=p(1,2367) /gb=XM_003124740 /gi=311251851 /ug=Ssc.26646 /len=3748"	GO:0043231//intracellular membrane-bounded organelle;GO:0031461//cullin-RING ubiquitin ligase complex;GO:0005813//centrosome	GO:0005488//binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0010639;GO:0032446//protein modification by small protein conjugation;GO:0000087//M phase of mitotic cell cycle;GO:0048513//organ development	gi|311251852|ref|XP_003124788.1|/0/PREDICTED: cyclin-F-like [Sus scrofa]
gnl|UG|Ssc#S35169199	19	5.47	10	2.86	15	4.51	"Sus scrofa mRNA, clone:LVR010051E03, expressed in liver /gb=AK232470 /gi=115550640 /ug=Ssc.78833 /len=2227"	GO:0044439	GO:0003997//acyl-CoA oxidase activity;GO:0008289//lipid binding;GO:0005515//protein binding;GO:0050662//coenzyme binding	GO:0006692//prostanoid metabolic process;GO:0048232//male gamete generation;GO:0006635//fatty acid beta-oxidation	gi|155369760|ref|NP_001094498.1|/0/peroxisomal acyl-coenzyme A oxidase 1 [Sus scrofa]
gnl|UG|Ssc#S58306228	6	1.73	0	0	9	2.7	"PREDICTED: Sus scrofa glucocorticoid-induced transcript 1 protein-like (LOC100511149), mRNA /cds=p(1,1650) /gb=XM_003130170 /gi=311264545 /ug=Ssc.93978 /len=1650"	-	GO:0005488//binding	-	gi|311264546|ref|XP_003130218.1|/0/PREDICTED: LOW QUALITY PROTEIN: glucocorticoid-induced transcript 1 protein-like [Sus scrofa]
gnl|UG|Ssc#S46877093	102	29.37	74	21.15	86	25.85	"PREDICTED: Sus scrofa UPF0557 protein C10orf119 homolog (LOC100155791), mRNA /cds=p(1,1929) /gb=XM_001929071 /gi=311271913 /ug=Ssc.31515 /len=3680"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0005488//binding	GO:0006260//DNA replication;GO:0007059//chromosome segregation;GO:0000087//M phase of mitotic cell cycle;GO:0051320	gi|311271914|ref|XP_001929106.2|/0/PREDICTED: UPF0557 protein C10orf119 homolog [Sus scrofa]
gnl|UG|Ssc#S58303149	50	14.4	95	27.16	20	6.01	"PREDICTED: Sus scrofa enhancer of polycomb homolog 2 (Drosophila) (EPC2), mRNA /cds=p(73,2496) /gb=XM_003133248 /gi=311272088 /ug=Ssc.25124 /len=4235"	GO:0043231//intracellular membrane-bounded organelle	-	"GO:0006259//DNA metabolic process;GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization;GO:0033554//cellular response to stress"	gi|311272089|ref|XP_003133296.1|/0/PREDICTED: enhancer of polycomb homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S35174237	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:AMP010030A10, expressed in alveolar macrophage /gb=AK230713 /gi=115545598 /ug=Ssc.11055 /len=2853"	GO:0043231//intracellular membrane-bounded organelle;GO:0005876//spindle microtubule;GO:0000776//kinetochore;GO:0044444//cytoplasmic part;GO:0031090//organelle membrane	GO:0043565//sequence-specific DNA binding	GO:0000075//cell cycle checkpoint;GO:0000070//mitotic sister chromatid segregation;GO:0040001//establishment of mitotic spindle localization;GO:0034502//protein localization to chromosome;GO:0048193//Golgi vesicle transport;GO:0065003;GO:0007346//regulation of mitotic cell cycle	gi|301786084|ref|XP_002928455.1|/0/PREDICTED: centromere/kinetochore protein zw10 homolog [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58303329	15	4.32	3	0.86	10	3.01	"PREDICTED: Sus scrofa calcium uptake protein 1, mitochondrial-like, transcript variant 2 (LOC100155980), mRNA /cds=p(174,1619) /gb=XM_003133069 /gi=311271355 /ug=Ssc.54480 /len=2443"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0046872//metal ion binding	GO:0006950//response to stress;GO:0070588//calcium ion transmembrane transport;GO:0051560	"gi|311271356|ref|XP_003133117.1|/0/PREDICTED: calcium uptake protein 1, mitochondrial-like isoform 2 [Sus scrofa]"
gnl|UG|Ssc#S58301550	7	2.02	8	2.29	4	1.2	"PREDICTED: Sus scrofa src kinase-associated phosphoprotein 2-like (LOC100520346), mRNA /cds=p(154,1230) /gb=XM_003134845 /gi=311275751 /ug=Ssc.21600 /len=3577"	GO:0044444//cytoplasmic part;GO:0016020//membrane	"GO:0030674//protein binding, bridging"	GO:0046649//lymphocyte activation;GO:0065003;GO:0008283//cell proliferation;GO:0034330;GO:0023052//signaling	gi|311275752|ref|XP_003134893.1|/0/PREDICTED: src kinase-associated phosphoprotein 2-like [Sus scrofa]
gnl|UG|Ssc#S35164136	26	7.49	10	2.86	20	6.01	"Sus scrofa mRNA, clone:SPL010013C10, expressed in spleen /gb=AK237222 /gi=115555590 /ug=Ssc.53892 /len=1815"	GO:0005884//actin filament;GO:0032432//actin filament bundle;GO:0005865//striated muscle thin filament;GO:0031674//I band;GO:0001726//ruffle	GO:0005198//structural molecule activity;GO:0003779//actin binding;GO:0042802//identical protein binding	GO:0032233//positive regulation of actin filament bundle assembly;GO:0006941//striated muscle contraction;GO:0009611//response to wounding;GO:0043462//regulation of ATPase activity;GO:0030835//negative regulation of actin filament depolymerization;GO:0001996//positive regulation of heart rate by epinephrine-norepinephrine;GO:0030155//regulation of cell adhesion;GO:0000302//response to reactive oxygen species;GO:0043009//chordate embryonic development;GO:0055008//cardiac muscle tissue morphogenesis;GO:0030030//cell projection organization;GO:0016477//cell migration;GO:0031032//actomyosin structure organization	gi|256000782|ref|NP_001157721.1|/2.65918e-101/tropomyosin alpha-1 chain isoform 2 [Mus musculus]
gnl|UG|Ssc#S58312684	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa proteinase-activated receptor 1-like (LOC100521609), mRNA /cds=p(1,2094) /gb=XM_003123723 /gi=311249703 /ug=Ssc.69824 /len=2110"	GO:0043231//intracellular membrane-bounded organelle;GO:0044459//plasma membrane part;GO:0016021//integral to membrane;GO:0045202//synapse	"GO:0005515//protein binding;GO:0008528//peptide receptor activity, G-protein coupled"	"GO:0002246//wound healing involved in inflammatory response;GO:0010524//positive regulation of calcium ion transport into cytosol;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0001775//cell activation;GO:0001894//tissue homeostasis;GO:0019229//regulation of vasoconstriction;GO:0033363//secretory granule organization;GO:0010557;GO:0032611;GO:0018108//peptidyl-tyrosine phosphorylation;GO:0007596//blood coagulation;GO:0016477//cell migration;GO:0010952//positive regulation of peptidase activity;GO:0006606//protein import into nucleus;GO:0043066//negative regulation of apoptosis;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0002237//response to molecule of bacterial origin;GO:0051283;GO:0006939//smooth muscle contraction;GO:0007528//neuromuscular junction development;GO:0008283//cell proliferation;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0000165//MAPKKK cascade;GO:0051931;GO:0006355//regulation of transcription, DNA-dependent"	gi|311249704|ref|XP_003123771.1|/0/PREDICTED: proteinase-activated receptor 1-like [Sus scrofa]
gnl|UG|Ssc#S46880333	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa mediator complex subunit 23 (MED23), mRNA /cds=p(1,3978) /gb=XM_001925502 /gi=311243932 /ug=Ssc.21994 /len=3978"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0005488//binding;GO:0003712//transcription cofactor activity	"GO:0006352//transcription initiation, DNA-dependent;GO:0006355//regulation of transcription, DNA-dependent"	gi|311243933|ref|XP_001925537.2|/0/PREDICTED: mediator of RNA polymerase II transcription subunit 23 [Sus scrofa]
gnl|UG|Ssc#S35165392	26	7.49	11	3.14	23	6.91	"Sus scrofa mRNA, clone:UTR010033E01, expressed in uterus /gb=AK240129 /gi=115554334 /ug=Ssc.8360 /len=1019"	GO:0031981//nuclear lumen	GO:0003723//RNA binding;GO:0019900//kinase binding;GO:0019887//protein kinase regulator activity	GO:0033673//negative regulation of kinase activity	gi|296192309|ref|XP_002744006.1|/1.59938e-53/PREDICTED: PRKR-interacting protein 1-like [Callithrix jacchus]
gnl|UG|Ssc#S6088283	5	1.44	0	0	10	3.01	"MI-P-E7-agz-f-11-1-UM.s1 MI-P-E7 Sus scrofa cDNA clone MI-P-E7-agz-f-11-1-UM 3', mRNA sequence /clone=MI-P-E7-agz-f-11-1-UM /clone_end=3' /gb=BQ600648 /gi=21547374 /ug=Ssc.14176 /len=637"	GO:0030427//site of polarized growth;GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0044425//membrane part;GO:0000267//cell fraction;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0044297//cell body	GO:0004672//protein kinase activity;GO:0051018//protein kinase A binding;GO:0008134//transcription factor binding;GO:0019900//kinase binding;GO:0032559;GO:0008092//cytoskeletal protein binding;GO:0035254//glutamate receptor binding	"GO:0006461//protein complex assembly;GO:0001952//regulation of cell-matrix adhesion;GO:0032321//positive regulation of Rho GTPase activity;GO:0043405//regulation of MAP kinase activity;GO:0048017//inositol lipid-mediated signaling;GO:0048167//regulation of synaptic plasticity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0048870//cell motility;GO:0021987//cerebral cortex development;GO:0022402//cell cycle process;GO:0033365//protein localization to organelle;GO:0007163//establishment or maintenance of cell polarity;GO:0001934//positive regulation of protein phosphorylation;GO:0012502//induction of programmed cell death;GO:0006935//chemotaxis;GO:0009896;GO:0006605//protein targeting;GO:0006984//ER-nucleus signaling pathway;GO:0043066//negative regulation of apoptosis;GO:0006073//cellular glucan metabolic process;GO:0000768//syncytium formation by plasma membrane fusion;GO:0043393//regulation of protein binding;GO:0060070//canonical Wnt receptor signaling pathway;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0010038//response to metal ion;GO:0051146//striated muscle cell differentiation;GO:0031345//negative regulation of cell projection organization;GO:0046824//positive regulation of nucleocytoplasmic transport;GO:0006355//regulation of transcription, DNA-dependent"	gi|74002668|ref|XP_856691.1|/1.84556e-65/PREDICTED: similar to Glycogen synthase kinase-3 beta (GSK-3 beta) isoform 4 [Canis familiaris]
gnl|UG|Ssc#S58311012	6	1.73	3	0.86	5	1.5	"PREDICTED: Sus scrofa TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa (TAF1B), mRNA /cds=p(1,1488) /gb=XM_003125391 /gi=311253130 /ug=Ssc.15789 /len=2062"	-	-	-	-
gnl|UG|Ssc#S58312427	45	12.96	67	19.15	16	4.81	"PREDICTED: Sus scrofa eukaryotic peptide chain release factor subunit 1-like (LOC100520896), mRNA /cds=p(159,1472) /gb=XM_003123975 /gi=311250233 /ug=Ssc.81721 /len=2339"	GO:0044424//intracellular part	GO:0003747//translation release factor activity;GO:0043021//ribonucleoprotein binding	GO:0051704;GO:0008213;GO:0006415//translational termination	"gi|237823782|pdb|3E1Y|A/0/Chain A, Crystal Structure Of Human Erf1ERF3 COMPLEX"
gnl|UG|Ssc#S55327510	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:MLTL10026D05, expressed in longissimus /gb=AK347139 /gi=288576544 /ug=Ssc.76359 /len=2179"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0004879//ligand-dependent nuclear receptor activity	GO:0023052//signaling;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|301775172|ref|XP_002923008.1|/0/PREDICTED: nuclear receptor ROR-alpha-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35164214	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVR010009H08, expressed in ovary /gb=AK234125 /gi=115555512 /ug=Ssc.37220 /len=2603"	-	-	-	gi|311269861|ref|XP_003132664.1|/0/PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 3-like [Sus scrofa]
gnl|UG|Ssc#S39987126	693	199.52	330	94.33	559	167.99	"rebs30c_m23.y1 ebs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW082191 /gi=181321442 /ug=Ssc.71141 /len=649"	GO:0005681//spliceosomal complex;GO:0044444//cytoplasmic part;GO:0031981//nuclear lumen	GO:0005488//binding	"GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|62955141|ref|NP_001017582.1|/1.08221e-44/small nuclear ribonucleoprotein Sm D2 [Danio rerio]
gnl|UG|Ssc#S26732890	12	3.45	11	3.14	4	1.2	"AJ943872 CSEQRAN17 Sus scrofa cDNA clone C0007306b19 5', mRNA sequence /clone=C0007306b19 /clone_end=5' /gb=AJ943872 /gi=74360614 /ug=Ssc.87798 /len=764"	GO:0031981//nuclear lumen	GO:0005488//binding	-	"gi|301786859|ref|XP_002928846.1|/3.21322e-36/PREDICTED: splicing factor, arginine/serine-rich 15-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S17513874	17	4.89	18	5.15	15	4.51	"BX668443 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0025.j.07 5prim, mRNA sequence /clone=scac0025.j.07 /clone_end=5' /gb=BX668443 /gi=90246434 /ug=Ssc.81463 /len=741"	-	-	-	-
gnl|UG|Ssc#S46877920	26	7.49	7	2	6	1.8	"PREDICTED: Sus scrofa Uncharacterized protein C6orf89 homolog, transcript variant 1 (LOC100156227), mRNA /cds=p(222,1268) /gb=XM_001929567 /gi=311260330 /ug=Ssc.7179 /len=2118"	GO:0031224//intrinsic to membrane	-	-	gi|311260329|ref|XP_003128415.1|/0/PREDICTED: uncharacterized protein C6orf89 homolog isoform 2 [Sus scrofa]
gnl|UG|Ssc#S20116351	31	8.93	96	27.44	38	11.42	"Sus scrofa secretory carrier membrane protein 1 (SCAMP1), mRNA /cds=p(132,1148) /gb=NM_214245 /gi=47523561 /ug=Ssc.757 /len=3850"	GO:0031224//intrinsic to membrane;GO:0008021//synaptic vesicle;GO:0030667//secretory granule membrane;GO:0044431//Golgi apparatus part;GO:0010008//endosome membrane	GO:0005515//protein binding	GO:0048193//Golgi vesicle transport	gi|47523562|ref|NP_999410.1|/7.32928e-166/secretory carrier-associated membrane protein 1 [Sus scrofa]
gnl|UG|Ssc#S23762009	0	0	3	0.86	0	0	"1119572 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN119628 /gi=59813888 /ug=Ssc.82381 /len=764"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0051536//iron-sulfur cluster binding	GO:0031163	gi|114577877|ref|XP_001137587.1|/1.00996e-114/PREDICTED: similar to HIRA interacting protein 5 isoform 7 [Pan troglodytes]
gnl|UG|Ssc#S39837406	0	0	2	0.57	0	0	"rche28_k16.y1 che Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV932684 /gi=178545959 /ug=Ssc.75285 /len=682"	GO:0031981//nuclear lumen;GO:0005746//mitochondrial respiratory chain	GO:0050136//NADH dehydrogenase (quinone) activity	GO:0051234//establishment of localization;GO:0022904//respiratory electron transport chain	"gi|74268404|gb|AAI03275.1|/2.63346e-33/NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa [Bos taurus]"
gnl|UG|Ssc#S58310274	2	0.58	0	0	5	1.5	"PREDICTED: Sus scrofa probable methyltransferase BCDIN3D-like (LOC100516732), mRNA /cds=p(6,863) /gb=XM_003126126 /gi=311255305 /ug=Ssc.36989 /len=863"	-	GO:0016741	GO:0006730//one-carbon metabolic process	gi|311255306|ref|XP_003126174.1|/1.5047e-152/PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase BCDIN3D-like [Sus scrofa]
gnl|UG|Ssc#S58305118	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa nucleolar protein 11-like (LOC100524893), mRNA /cds=p(26,2170) /gb=XM_003131277 /gi=311266942 /ug=Ssc.94374 /len=2462"	GO:0031981//nuclear lumen	-	-	gi|311266943|ref|XP_003131325.1|/0/PREDICTED: nucleolar protein 11-like [Sus scrofa]
gnl|UG|Ssc#S46879726	7	2.02	4	1.14	3	0.9	"PREDICTED: Sus scrofa hypothetical protein LOC100152248 (LOC100152248), mRNA /cds=p(145,1665) /gb=XM_001925392 /gi=311253784 /ug=Ssc.39504 /len=1665"	-	-	-	gi|311253785|ref|XP_001925427.2|/0/PREDICTED: hypothetical protein LOC100152248 [Sus scrofa]
gnl|UG|Ssc#S19542416	3	0.86	2	0.57	3	0.9	"947311 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158512 /gi=46172942 /ug=Ssc.18635 /len=715"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0004872//receptor activity;GO:0016505//apoptotic protease activator activity;GO:0032813//tumor necrosis factor receptor superfamily binding	GO:0012502//induction of programmed cell death;GO:0006916//anti-apoptosis;GO:0043433//negative regulation of transcription factor activity;GO:0043029//T cell homeostasis;GO:0006919//activation of caspase activity	gi|73964537|ref|XP_855513.1|/1.34088e-70/PREDICTED: similar to CD27-binding (Siva) protein isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58313433	9	2.59	3	0.86	11	3.31	"PREDICTED: Sus scrofa BTB (POZ) domain containing 10, transcript variant 1 (BTBD10), mRNA /cds=p(323,1606) /gb=XM_003122968 /gi=311248182 /ug=Ssc.26110 /len=2435"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|301781488|ref|XP_002926158.1|/0/PREDICTED: BTB/POZ domain-containing protein 10-like isoform 1 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58308842	0	0	3	0.86	2	0.6	"PREDICTED: Sus scrofa kinesin-like protein KIF1B-like (LOC100522016), mRNA /cds=p(1,1107) /gb=XM_003127556 /gi=311258418 /ug=Ssc.33802 /len=1328"	GO:0012506//vesicle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton;GO:0042598//vesicular fraction	"GO:0030246//carbohydrate binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0032559;GO:0003774//motor activity;GO:0015631//tubulin binding"	"GO:0006098//pentose-phosphate shunt;GO:0007275//multicellular organismal development;GO:0012501//programmed cell death;GO:0009207;GO:0019520;GO:0007268//synaptic transmission;GO:0034643//establishment of mitochondrion localization, microtubule-mediated;GO:0008088//axon cargo transport"	gi|311258419|ref|XP_003127604.1|/2.97679e-165/PREDICTED: kinesin-like protein KIF1B-like [Sus scrofa]
gnl|UG|Ssc#S58314698	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa GPI ethanolamine phosphate transferase 1-like (LOC100522054), mRNA /cds=p(303,2006) /gb=XM_003121705 /gi=311245241 /ug=Ssc.49288 /len=2006"	GO:0031090//organelle membrane	"GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0006506//GPI anchor biosynthetic process	gi|311245242|ref|XP_003121753.1|/0/PREDICTED: GPI ethanolamine phosphate transferase 1-like [Sus scrofa]
gnl|UG|Ssc#S55319004	2	0.58	5	1.43	0	0	"Sus scrofa mRNA, clone:MLN010038A03, expressed in mesenteric lymph nodes /gb=AK346687 /gi=288785880 /ug=Ssc.25320 /len=1120"	-	-	-	gi|149714257|ref|XP_001504180.1|/4.00661e-141/PREDICTED: similar to Coiled-coil domain containing 65 [Equus caballus]
gnl|UG|Ssc#S19550533	12	3.45	15	4.29	2	0.6	"998320 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN166641 /gi=46181071 /ug=Ssc.83540 /len=664"	-	-	-	-
gnl|UG|Ssc#S58311346	22	6.33	13	3.72	3	0.9	"PREDICTED: Sus scrofa nucleolysin TIA-1 isoform p40-like (LOC100510958), mRNA /cds=p(19,681) /gb=XM_003125054 /gi=311252450 /ug=Ssc.7215 /len=3669"	GO:0043231//intracellular membrane-bounded organelle	GO:0003729//mRNA binding	GO:0012502//induction of programmed cell death;GO:0006412//translation;GO:0043484//regulation of RNA splicing;GO:0010558	gi|291386623|ref|XP_002709696.1|/2.1807e-135/PREDICTED: TIA1 cytotoxic granule-associated RNA binding protein-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S55283936	2	0.58	0	0	4	1.2	"FS664669 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10006A12 5', mRNA sequence /clone=HTMT10006A12 /clone_end=5' /gb=FS664669 /gi=288282350 /ug=Ssc.94251 /len=792"	-	-	-	-
gnl|UG|Ssc#S55322474	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:TCH010047E05, expressed in trachea /gb=AK350870 /gi=288782398 /ug=Ssc.43783 /len=2002"	-	GO:0042802//identical protein binding;GO:0016740//transferase activity;GO:0048037//cofactor binding;GO:0016846//carbon-sulfur lyase activity	GO:0008652//cellular amino acid biosynthetic process	gi|311247953|ref|XP_003122900.1|/0/PREDICTED: 1-aminocyclopropane-1-carboxylate synthase-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46880793	0	0	0	0	0	0	"PREDICTED: Sus scrofa ninein (GSK3B interacting protein), transcript variant 1 (NIN), mRNA /cds=p(1,6411) /gb=XM_001925626 /gi=311245482 /ug=Ssc.50121 /len=6778"	GO:0005815//microtubule organizing center	GO:0046872//metal ion binding;GO:0032561	GO:0051640//organelle localization	gi|311245483|ref|XP_001925661.2|/0/PREDICTED: ninein isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35165166	9	2.59	2	0.57	8	2.4	"Sus scrofa mRNA, clone:PBL010060E07, expressed in periphral blood mononuclear cell /gb=AK236970 /gi=115554560 /ug=Ssc.8264 /len=1161"	-	GO:0016791//phosphatase activity	GO:0010467//gene expression	gi|311252385|ref|XP_003125055.1|/1.03672e-163/PREDICTED: RNA/RNP complex-1-interacting phosphatase-like [Sus scrofa]
gnl|UG|Ssc#S40003386	0	0	0	0	2	0.6	"rece02_a17.y1 ece Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW098295 /gi=181301627 /ug=Ssc.67127 /len=358"	-	-	-	-
gnl|UG|Ssc#S55318672	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:MLN010060H10, expressed in mesenteric lymph nodes /gb=AK346820 /gi=288786212 /ug=Ssc.10903 /len=1000"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0032991//macromolecular complex	GO:0003676//nucleic acid binding	"GO:0000291//nuclear-transcribed mRNA catabolic process, exonucleolytic;GO:0008380//RNA splicing"	gi|73979315|ref|XP_532806.2|/1.60599e-70/PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm) (Cancer-associated Sm-like) [Canis familiaris]
gnl|UG|Ssc#S58309140	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa homeobox protein Meis3-like (LOC100518492), mRNA /cds=p(1,1326) /gb=XM_003127260 /gi=311257813 /ug=Ssc.48743 /len=1326"	GO:0043231//intracellular membrane-bounded organelle	GO:0003677//DNA binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|311257814|ref|XP_003127308.1|/0/PREDICTED: homeobox protein Meis3-like [Sus scrofa]
gnl|UG|Ssc#S35173549	33	9.5	18	5.15	38	11.42	"Sus scrofa mRNA, clone:UTR010089D01, expressed in uterus /gb=AK240524 /gi=115546286 /ug=Ssc.22735 /len=1782"	GO:0044424//intracellular part	GO:0046914//transition metal ion binding	-	gi|300796218|ref|NP_001179729.1|/0/dystrobrevin beta [Bos taurus]
gnl|UG|Ssc#S20936016	17	4.89	43	12.29	12	3.61	"AJ647739 CSEQRAN19 Sus scrofa cDNA clone C0003260_I14, mRNA sequence /clone=C0003260_I14 /gb=AJ647739 /gi=49324584 /ug=Ssc.74081 /len=510"	GO:0005578//proteinaceous extracellular matrix	GO:0005515//protein binding;GO:0005539//glycosaminoglycan binding	GO:0043062//extracellular structure organization;GO:0010810	gi|47718030|gb|AAH70926.1|/6.00224e-55/Ccdc80 protein [Rattus norvegicus]
gnl|UG|Ssc#S35173199	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVR010068E06, expressed in ovary /gb=AK234474 /gi=115546636 /ug=Ssc.3460 /len=2416"	-	GO:0016301//kinase activity;GO:0005488//binding	GO:0043549//regulation of kinase activity	gi|311268944|ref|XP_003132274.1|/4.38463e-152/PREDICTED: nitrogen permease regulator 2-like protein-like [Sus scrofa]
gnl|UG|Ssc#S33209438	0	0	4	1.14	2	0.6	"Sus scrofa nuclear receptor corepressor 2 (NCOR2) mRNA, complete cds, alternatively spliced /cds=p(134,7549) /gb=DQ520948 /gi=99160007 /ug=Ssc.1505 /len=8549"	GO:0043234//protein complex;GO:0044451//nucleoplasm part	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0004871//signal transducer activity;GO:0019899//enzyme binding;GO:0005102//receptor binding	GO:0006629//lipid metabolic process;GO:0000122//negative regulation of transcription from RNA polymerase II promoter	gi|113205766|ref|NP_001038041.1|/0/nuclear receptor corepressor 2 [Sus scrofa]
gnl|UG|Ssc#S18548693	69	19.87	48	13.72	108	32.46	"BX917344 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0037.o.07 5prim, mRNA sequence /clone=scan0037.o.07 /clone_end=5' /gb=BX917344 /gi=90240172 /ug=Ssc.2762 /len=963"	GO:0071256	GO:0046872//metal ion binding	GO:0015031//protein transport	gi|311277187|ref|XP_003135530.1|/1.09057e-40/PREDICTED: translocon-associated protein subunit delta-like [Sus scrofa]
gnl|UG|Ssc#S55326010	0	0	0	0	5	1.5	"Sus scrofa mRNA, clone:OVRM10220H05, expressed in ovary /gb=AK348641 /gi=288778816 /ug=Ssc.12788 /len=2126"	GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding	-	gi|311263391|ref|XP_003129664.1|/4.10927e-173/PREDICTED: RING finger protein 121-like [Sus scrofa]
gnl|UG|Ssc#S55326188	8	2.3	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10170C03, expressed in ovary /gb=AK348463 /gi=288778638 /ug=Ssc.7928 /len=2926"	GO:0005769//early endosome	"GO:0030674//protein binding, bridging"	GO:0016192//vesicle-mediated transport;GO:0015031//protein transport;GO:0007173//epidermal growth factor receptor signaling pathway	gi|73948986|ref|XP_535174.2|/0/PREDICTED: similar to signal transducing adaptor molecule 1 [Canis familiaris]
gnl|UG|Ssc#S58306126	12	3.45	6	1.72	18	5.41	"PREDICTED: Sus scrofa calcium-independent phospholipase A2-gamma-like (LOC100521328), mRNA /cds=p(1,1932) /gb=XM_003130273 /gi=311264754 /ug=Ssc.46048 /len=2750"	GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane;GO:0031090//organelle membrane;GO:0012505//endomembrane system;GO:0044439	GO:0004623//phospholipase A2 activity;GO:0032559	GO:0006629//lipid metabolic process;GO:0032787//monocarboxylic acid metabolic process	gi|311264755|ref|XP_003130321.1|/0/PREDICTED: calcium-independent phospholipase A2-gamma-like [Sus scrofa]
gnl|UG|Ssc#S35165009	3	0.86	3	0.86	4	1.2	"Sus scrofa mRNA, clone:SPL010002D11, expressed in spleen /gb=AK237128 /gi=115554717 /ug=Ssc.7566 /len=1324"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0005488//binding;GO:0003712//transcription cofactor activity;GO:0016251//general RNA polymerase II transcription factor activity	"GO:0006355//regulation of transcription, DNA-dependent;GO:0006352//transcription initiation, DNA-dependent"	gi|158564265|sp|Q2F7Z4.2|MED7_PIG/5.65593e-116/RecName: Full=Mediator of RNA polymerase II transcription subunit 7; AltName: Full=Cofactor required for Sp1 transcriptional activation subunit 9; Short=CRSP complex subunit 9; AltName: Full=Mediator complex subunit 7
gnl|UG|Ssc#S58311282	4	1.15	0	0	5	1.5	"PREDICTED: Sus scrofa vaccinia related kinase 2 (VRK2), mRNA /cds=p(1,1524) /gb=XM_003125120 /gi=311252580 /ug=Ssc.22028 /len=1524"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0004672//protein kinase activity;GO:0032559	GO:0006468//protein phosphorylation	gi|311252581|ref|XP_003125168.1|/0/PREDICTED: serine/threonine-protein kinase VRK2-like [Sus scrofa]
gnl|UG|Ssc#S58303354	4	1.15	4	1.14	4	1.2	"PREDICTED: Sus scrofa AT-rich interactive domain-containing protein 5B-like (LOC100151846), mRNA /cds=p(1,3567) /gb=XM_003133043 /gi=311271251 /ug=Ssc.33113 /len=4157"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding	"GO:0035270//endocrine system development;GO:0043388//positive regulation of DNA binding;GO:0006355//regulation of transcription, DNA-dependent;GO:0040007//growth;GO:0001667//ameboidal cell migration;GO:0009887//organ morphogenesis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0030154//cell differentiation;GO:0060612//adipose tissue development;GO:0008406//gonad development"	gi|311271252|ref|XP_003133091.1|/0/PREDICTED: AT-rich interactive domain-containing protein 5B-like [Sus scrofa]
gnl|UG|Ssc#S26724539	17	4.89	9	2.57	21	6.31	"AJ960623 KN404_2 Sus scrofa cDNA clone C0007759j17 5', mRNA sequence /clone=C0007759j17 /clone_end=5' /gb=AJ960623 /gi=74377439 /ug=Ssc.35799 /len=815"	-	-	-	-
gnl|UG|Ssc#S40055461	2	0.58	0	0	2	0.6	"rese24c_p16.y1 ese Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW150368 /gi=182579317 /ug=Ssc.67389 /len=549"	-	-	-	gi|300872546|gb|ADK39026.1|/1.01562e-19/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S58302342	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa serine/threonine-protein kinase 10-like (LOC100524465), mRNA /cds=p(1,1305) /gb=XM_003134054 /gi=311273920 /ug=Ssc.21122 /len=2281"	-	GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|311273921|ref|XP_003134102.1|/0/PREDICTED: serine/threonine-protein kinase 10-like [Sus scrofa]
gnl|UG|Ssc#S46881027	15	4.32	3	0.86	8	2.4	"PREDICTED: Sus scrofa proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 (PSMD5), mRNA /cds=p(16,1401) /gb=XM_001925501 /gi=311246297 /ug=Ssc.6772 /len=1934"	GO:0005838//proteasome regulatory particle	GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0043248//proteasome assembly"	gi|311246298|ref|XP_001925536.2|/0/PREDICTED: 26S proteasome non-ATPase regulatory subunit 5 [Sus scrofa]
gnl|UG|Ssc#S58315244	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa utrophin (UTRN), mRNA /cds=p(1,1950) /gb=XM_003121163 /gi=311243827 /ug=Ssc.65392 /len=2029"	GO:0005626//insoluble fraction;GO:0031981//nuclear lumen;GO:0044459//plasma membrane part;GO:0043232	GO:0008092//cytoskeletal protein binding;GO:0046914//transition metal ion binding	GO:0003012//muscle system process;GO:0048513//organ development;GO:0001952//regulation of cell-matrix adhesion	gi|311243828|ref|XP_003121211.1|/0/PREDICTED: utrophin-like [Sus scrofa]
gnl|UG|Ssc#S35168504	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LVR010100E05, expressed in liver /gb=AK232619 /gi=115551186 /ug=Ssc.16155 /len=2258"	-	-	-	-
gnl|UG|Ssc#S58305883	0	0	5	1.43	3	0.9	"PREDICTED: Sus scrofa dual specificity phosphatase 10 (DUSP10), mRNA /cds=p(149,1597) /gb=XM_003130510 /gi=311265250 /ug=Ssc.46277 /len=2518"	GO:0031981//nuclear lumen	GO:0008138//protein tyrosine/serine/threonine phosphatase activity	GO:0032872//regulation of stress-activated MAPK cascade;GO:0043409//negative regulation of MAPKKK cascade;GO:0043407//negative regulation of MAP kinase activity;GO:0050776//regulation of immune response;GO:0002698;GO:0031347//regulation of defense response;GO:0006470//protein dephosphorylation;GO:0002237//response to molecule of bacterial origin	gi|311265251|ref|XP_003130558.1|/0/PREDICTED: dual specificity protein phosphatase 10-like [Sus scrofa]
gnl|UG|Ssc#S58301759	4	1.15	5	1.43	0	0	"PREDICTED: Sus scrofa cAMP responsive element binding protein 3-like 2 (CREB3L2), mRNA /cds=p(1,1563) /gb=XM_003134635 /gi=311275326 /ug=Ssc.89123 /len=1563"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0010843//promoter binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	"GO:0009888//tissue development;GO:0006355//regulation of transcription, DNA-dependent;GO:0033554//cellular response to stress;GO:0030154//cell differentiation;GO:0048193//Golgi vesicle transport"	gi|311275327|ref|XP_003134683.1|/0/PREDICTED: cyclic AMP-responsive element-binding protein 3-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35166290	3	0.86	2	0.57	5	1.5	"Sus scrofa mRNA, clone:OVRM10212A12, expressed in ovary /gb=AK236651 /gi=115553448 /ug=Ssc.54203 /len=2515"	GO:0031252//cell leading edge;GO:0044444//cytoplasmic part	GO:0030234//enzyme regulator activity;GO:0003779//actin binding	GO:0007265//Ras protein signal transduction;GO:0006915//apoptosis;GO:0000187//activation of MAPK activity	gi|311275781|ref|XP_003134908.1|/3.89615e-125/PREDICTED: drebrin-like protein-like [Sus scrofa]
gnl|UG|Ssc#S58308679	5	1.44	0	0	3	0.9	"PREDICTED: Sus scrofa palmitoyltransferase ZDHHC18-like (LOC100513544), mRNA /cds=p(1,1299) /gb=XM_003127734 /gi=311258757 /ug=Ssc.48690 /len=1548"	GO:0031224//intrinsic to membrane	GO:0008415//acyltransferase activity;GO:0046914//transition metal ion binding	GO:0008104//protein localization	gi|311258758|ref|XP_003127782.1|/0/PREDICTED: palmitoyltransferase ZDHHC18-like [Sus scrofa]
gnl|UG|Ssc#S58301578	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa beta-chimaerin-like (LOC100514933), mRNA /cds=p(1,1674) /gb=XM_003134818 /gi=311275694 /ug=Ssc.60820 /len=1674"	GO:0005624//membrane fraction;GO:0044444//cytoplasmic part	"GO:0005100//Rho GTPase activator activity;GO:0043169//cation binding;GO:0030674//protein binding, bridging"	GO:0032321//positive regulation of Rho GTPase activity	gi|311275695|ref|XP_003134866.1|/0/PREDICTED: beta-chimaerin-like [Sus scrofa]
gnl|UG|Ssc#S40520569	0	0	3	0.86	0	0	"rsug09_i13.y1 sug Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW615175 /gi=183081672 /ug=Ssc.92513 /len=219"	-	-	-	-
gnl|UG|Ssc#S58307233	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa zinc finger protein 827 (ZNF827), mRNA /cds=p(49,3120) /gb=XM_003129167 /gi=311262496 /ug=Ssc.31737 /len=3120"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|311262497|ref|XP_003129215.1|/0/PREDICTED: zinc finger protein 827-like [Sus scrofa]
gnl|UG|Ssc#S55312978	237	68.23	267	76.32	163	48.99	"FS688289 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRT10023E07 5', mRNA sequence /clone=OVRT10023E07 /clone_end=5' /gb=FS688289 /gi=288254627 /ug=Ssc.93618 /len=802"	-	-	-	-
gnl|UG|Ssc#S29975290	9	2.59	32	9.15	15	4.51	"PDUts1097B10 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1097B10 5' similar to homologue to ref|NM_003071.2| Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3 (SMARCA3), transcrip> /clone=PDUts1097B10 /clone_end=5' /gb=CV871948 /gi=84125908 /ug=Ssc.88397 /len=676"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0017111//nucleoside-triphosphatase activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0032559	"GO:0006355//regulation of transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|300796173|ref|NP_001179215.1|/6.56934e-69/helicase-like transcription factor [Bos taurus]
gnl|UG|Ssc#S37959691	22	6.33	2	0.57	17	5.11	"Sus scrofa heat shock 105kDa/110kDa protein 1 (Hsph1) mRNA, complete cds /cds=p(342,2921) /gb=EF486357 /gi=141521427 /ug=Ssc.1231 /len=3616"	GO:0043231//intracellular membrane-bounded organelle	GO:0032559	GO:0051084//'de novo' posttranslational protein folding;GO:0006950//response to stress	gi|148225750|ref|NP_001090973.1|/0/heat shock protein 105 kDa [Sus scrofa]
gnl|UG|Ssc#S55326642	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10040B09, expressed in ovary /gb=AK348009 /gi=288778184 /ug=Ssc.37334 /len=1311"	-	-	-	-
gnl|UG|Ssc#S39937599	8	2.3	5	1.43	14	4.21	"rcte14_o13.y1 cte Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW032664 /gi=181262451 /ug=Ssc.66003 /len=339"	-	-	-	-
gnl|UG|Ssc#S20116814	0	0	0	0	2	0.6	"Sus scrofa vinculin (VCL), mRNA /cds=p(1,3204) /gb=NM_213934 /gi=47522617 /ug=Ssc.11071 /len=5200"	GO:0032991//macromolecular complex;GO:0032432//actin filament bundle;GO:0005913//cell-cell adherens junction;GO:0030016//myofibril;GO:0005924//cell-substrate adherens junction;GO:0019866//organelle inner membrane	GO:0050839//cell adhesion molecule binding;GO:0008092//cytoskeletal protein binding;GO:0017016//Ras GTPase binding;GO:0002162//dystroglycan binding	GO:0003012//muscle system process;GO:0007599//hemostasis;GO:0034613//cellular protein localization;GO:0048729//tissue morphogenesis;GO:0007043//cell-cell junction assembly;GO:0016337//cell-cell adhesion;GO:0006887//exocytosis;GO:0030031//cell projection assembly;GO:0031589//cell-substrate adhesion;GO:0001775//cell activation;GO:0016477//cell migration	gi|47522618|ref|NP_999099.1|/0/vinculin [Sus scrofa]
gnl|UG|Ssc#S58314149	4	1.15	0	0	9	2.7	"PREDICTED: Sus scrofa uridine-cytidine kinase 1-like, transcript variant 1 (LOC100525976), mRNA /cds=p(118,951) /gb=XM_003122250 /gi=311246677 /ug=Ssc.2921 /len=1926"	-	-	-	gi|311246678|ref|XP_003122298.1|/9.7095e-142/PREDICTED: uridine-cytidine kinase 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58308849	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa solute carrier family 25 member 33-like (LOC100517764), mRNA /cds=p(254,1219) /gb=XM_003127538 /gi=311258404 /ug=Ssc.27074 /len=1507"	GO:0019866//organelle inner membrane;GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0006810//transport	gi|311258405|ref|XP_003127586.1|/1.62153e-178/PREDICTED: solute carrier family 25 member 33-like [Sus scrofa]
gnl|UG|Ssc#S58307283	123	35.41	138	39.45	58	17.43	"PREDICTED: Sus scrofa septin 11 (SEPT11), mRNA /cds=p(66,1355) /gb=XM_003129096 /gi=311262395 /ug=Ssc.4381 /len=5211"	GO:0032432//actin filament bundle;GO:0030425//dendrite;GO:0032156;GO:0044459//plasma membrane part	GO:0032561	GO:0009987//cellular process;GO:0051259//protein oligomerization	gi|114594094|ref|XP_517208.2|/0/PREDICTED: septin 11 [Pan troglodytes]
gnl|UG|Ssc#S35164999	4	1.15	2	0.57	11	3.31	"Sus scrofa mRNA, clone:SPL010003E06, expressed in spleen /gb=AK237138 /gi=115554727 /ug=Ssc.54769 /len=2170"	GO:0019866//organelle inner membrane;GO:0005759//mitochondrial matrix	GO:0003995//acyl-CoA dehydrogenase activity;GO:0050662//coenzyme binding;GO:0005504//fatty acid binding	GO:0000038//very long-chain fatty acid metabolic process;GO:0045922//negative regulation of fatty acid metabolic process;GO:0006091//generation of precursor metabolites and energy;GO:0031327;GO:0006635//fatty acid beta-oxidation;GO:0048871//multicellular organismal homeostasis;GO:0008203//cholesterol metabolic process	"gi|27806205|ref|NP_776919.1|/0/very long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S58307446	13	3.74	2	0.57	14	4.21	"PREDICTED: Sus scrofa glucosamine-6-phosphate isomerase 2-like, transcript variant 1 (LOC100516092), mRNA /cds=p(156,986) /gb=XM_003128948 /gi=311262066 /ug=Ssc.6250 /len=1884"	GO:0044424//intracellular part	"GO:0016861//intramolecular oxidoreductase activity, interconverting aldoses and ketoses"	GO:0006041//glucosamine metabolic process	gi|114593868|ref|XP_001143245.1|/3.55541e-165/PREDICTED: similar to glucosamine-6-phosphate deaminase 2 variant [Pan troglodytes]
gnl|UG|Ssc#S20937862	833	239.82	306	87.47	805	241.92	"AJ649585 CSEQRAN19 Sus scrofa cDNA clone C0003272_O08, mRNA sequence /clone=C0003272_O08 /gb=AJ649585 /gi=49326430 /ug=Ssc.74020 /len=490"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031252//cell leading edge;GO:0043234//protein complex;GO:0042598//vesicular fraction;GO:0044444//cytoplasmic part	"GO:0032561;GO:0005515//protein binding;GO:0004672//protein kinase activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0032559;GO:0004518//nuclease activity;GO:0016776//phosphotransferase activity, phosphate group as acceptor"	"GO:0006351//transcription, DNA-dependent;GO:0009209//pyrimidine ribonucleoside triphosphate biosynthetic process;GO:0051099//positive regulation of binding;GO:0007589//body fluid secretion;GO:0002573//myeloid leukocyte differentiation;GO:0048732//gland development;GO:0006796//phosphate metabolic process;GO:0030858//positive regulation of epithelial cell differentiation;GO:0008284//positive regulation of cell proliferation;GO:0006171//cAMP biosynthetic process;GO:0006915//apoptosis;GO:0009206;GO:0009132//nucleoside diphosphate metabolic process"	gi|82900057|ref|XP_485703.2|/4.90217e-85/PREDICTED: nucleoside diphosphate kinase B-like [Mus musculus]
gnl|UG|Ssc#S35168053	31	8.93	25	7.15	20	6.01	"Sus scrofa mRNA, clone:THY010063D10, expressed in thymus /gb=AK239101 /gi=115551637 /ug=Ssc.16933 /len=1238"	-	-	-	-
gnl|UG|Ssc#S20938156	67	19.29	7	2	19	5.71	"AJ649879 CSEQRAN19 Sus scrofa cDNA clone C0003273_M04, mRNA sequence /clone=C0003273_M04 /gb=AJ649879 /gi=49326724 /ug=Ssc.74071 /len=464"	GO:0042579//microbody;GO:0031981//nuclear lumen;GO:0032991//macromolecular complex;GO:0031982//vesicle;GO:0044429//mitochondrial part;GO:0030425//dendrite;GO:0044297//cell body;GO:0016020//membrane;GO:0044421//extracellular region part	GO:0016209//antioxidant activity;GO:0003824//catalytic activity;GO:0042802//identical protein binding;GO:0019903//protein phosphatase binding;GO:0046914//transition metal ion binding	"GO:0001894//tissue homeostasis;GO:0045986//negative regulation of smooth muscle contraction;GO:0001932//regulation of protein phosphorylation;GO:0006281//DNA repair;GO:0045104//intermediate filament cytoskeleton organization;GO:0044093;GO:0014075//response to amine stimulus;GO:0022011//myelination in peripheral nervous system;GO:0006887//exocytosis;GO:0050954//sensory perception of mechanical stimulus;GO:0048232//male gamete generation;GO:0035264//multicellular organism growth;GO:0000737//DNA catabolic process, endonucleolytic;GO:0033077//T cell differentiation in thymus;GO:0060122//inner ear receptor stereocilium organization;GO:0007568//aging;GO:0006801//superoxide metabolic process;GO:0042743//hydrogen peroxide metabolic process;GO:0040008//regulation of growth;GO:0007599//hemostasis;GO:0043066//negative regulation of apoptosis;GO:0006790//sulfur compound metabolic process;GO:0003015//heart process;GO:0009991//response to extracellular stimulus;GO:0010038//response to metal ion;GO:0022602//ovulation cycle process;GO:0008015//blood circulation;GO:0010894//negative regulation of steroid biosynthetic process;GO:0000165//MAPKKK cascade;GO:0007610//behavior;GO:0006875//cellular metal ion homeostasis;GO:0000305//response to oxygen radical;GO:0009611//response to wounding;GO:0001816//cytokine production"	gi|34784756|gb|AAH58148.1|/5.20558e-75/Unknown (protein for IMAGE:6890907) [Rattus norvegicus]
gnl|UG|Ssc#S58314965	10	2.88	2	0.57	6	1.8	"PREDICTED: Sus scrofa CXXC finger protein 1 (CXXC1), mRNA /cds=p(110,2095) /gb=XM_003121437 /gi=311244528 /ug=Ssc.7050 /len=2395"	GO:0016604//nuclear body;GO:0034708;GO:0016585//chromatin remodeling complex;GO:0034399//nuclear periphery	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0018024//histone-lysine N-methyltransferase activity;GO:0043565//sequence-specific DNA binding	"GO:0034968//histone lysine methylation;GO:0006351//transcription, DNA-dependent"	gi|311244529|ref|XP_003121485.1|/0/PREDICTED: cpG-binding protein-like [Sus scrofa]
gnl|UG|Ssc#S26727540	2	0.58	0	0	0	0	"AJ963624 KN404_2 Sus scrofa cDNA clone C0007754l24 3', mRNA sequence /clone=C0007754l24 /clone_end=3' /gb=AJ963624 /gi=74380440 /ug=Ssc.48608 /len=856"	-	-	-	-
gnl|UG|Ssc#S58311250	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa ankyrin repeat and SOCS box protein 3-like (LOC100518009), partial mRNA /cds=p(1,1686) /gb=XM_003125151 /gi=311252646 /ug=Ssc.27198 /len=3062"	-	-	GO:0007165//signal transduction	"gi|311252647|ref|XP_003125199.1|/0/PREDICTED: ankyrin repeat and SOCS box protein 3-like, partial [Sus scrofa]"
gnl|UG|Ssc#S20936445	0	0	0	0	0	0	"AJ648168 CSEQRAN19 Sus scrofa cDNA clone C0003263_N12, mRNA sequence /clone=C0003263_N12 /gb=AJ648168 /gi=49325013 /ug=Ssc.74089 /len=480"	-	-	-	"gi|149018344|gb|EDL76985.1|/6.55526e-50/CCR4-NOT transcription complex, subunit 10, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S55326924	18	5.18	6	1.72	5	1.5	"Sus scrofa mRNA, clone:OVR010083A03, expressed in ovary /gb=AK347727 /gi=288777902 /ug=Ssc.5258 /len=2104"	GO:0031981//nuclear lumen;GO:0005815//microtubule organizing center;GO:0005924//cell-substrate adherens junction	GO:0030275//LRR domain binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0008092//cytoskeletal protein binding	GO:0000278//mitotic cell cycle;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0022613//ribonucleoprotein complex biogenesis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0010561;GO:0006917//induction of apoptosis;GO:0009790//embryo development;GO:0033554//cellular response to stress;GO:0043066//negative regulation of apoptosis	gi|311267823|ref|XP_003131755.1|/1.0114e-131/PREDICTED: protein AATF-like [Sus scrofa]
gnl|UG|Ssc#S55319787	3	0.86	10	2.86	5	1.5	"Sus scrofa mRNA, clone:THY010119A06, expressed in thymus /gb=AK351978 /gi=288785097 /ug=Ssc.1962 /len=1498"	GO:0031981//nuclear lumen	GO:0005515//protein binding	GO:0000377;GO:0044267//cellular protein metabolic process	gi|301755110|ref|XP_002913374.1|/2.3604e-121/PREDICTED: dnaJ homolog subfamily C member 8-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40083559	16	4.61	48	13.72	29	8.72	"rfcc35b_j3.y1 fcc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW178466 /gi=182545038 /ug=Ssc.67669 /len=486"	-	-	-	gi|300872546|gb|ADK39026.1|/3.99032e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S29966082	48	13.82	20	5.72	20	6.01	"ESDc28 Pig pBluescript and pTrueBlue library Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DR120956 /gi=84096495 /ug=Ssc.217 /len=1151"	GO:0031410//cytoplasmic vesicle	GO:0016790//thiolester hydrolase activity	-	gi|7288152|dbj|BAA92850.1|/7.29657e-170/esterase D [Sus scrofa]
gnl|UG|Ssc#S35171288	26	7.49	8	2.29	20	6.01	"Sus scrofa mRNA, clone:OVRM10054G10, expressed in ovary /gb=AK235168 /gi=115548551 /ug=Ssc.43428 /len=2933"	GO:0030119//AP-type membrane coat adaptor complex;GO:0005905//coated pit;GO:0030139//endocytic vesicle;GO:0044439;GO:0030118//clathrin coat	GO:0005488//binding	GO:0007267//cell-cell signaling;GO:0015031//protein transport;GO:0007173//epidermal growth factor receptor signaling pathway;GO:0050688//regulation of defense response to virus;GO:0006935//chemotaxis	"gi|74003314|ref|XP_858405.1|/0/PREDICTED: similar to adaptor-related protein complex 2, mu 1 subunit isoform 16 [Canis familiaris]"
gnl|UG|Ssc#S35169002	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10123F09, expressed in ovary /gb=AK235898 /gi=115550823 /ug=Ssc.89668 /len=1973"	GO:0030130//clathrin coat of trans-Golgi network vesicle	-	GO:0016192//vesicle-mediated transport;GO:0015031//protein transport	gi|296201952|ref|XP_002748367.1|/0/PREDICTED: synergin gamma isoform 3 [Callithrix jacchus]
gnl|UG|Ssc#S46876546	30	8.64	8	2.29	48	14.43	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 4E nuclear import factor 1, transcript variant 1 (EIF4ENIF1), mRNA /cds=p(1,2955) /gb=XM_001927490 /gi=311270974 /ug=Ssc.4966 /len=3923"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding;GO:0022892"	GO:0006810//transport;GO:0006412//translation	gi|311270975|ref|XP_001927525.2|/0/PREDICTED: eukaryotic translation initiation factor 4E transporter-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58304474	36	10.36	28	8	23	6.91	"PREDICTED: Sus scrofa hypothetical protein LOC100516108 (LOC100516108), partial mRNA /cds=p(1,1746) /gb=XM_003131924 /gi=311268265 /ug=Ssc.33969 /len=1802"	GO:0035097//histone methyltransferase complex	GO:0005488//binding	-	"gi|311268266|ref|XP_003131972.1|/6.79853e-57/PREDICTED: hypothetical protein LOC100516108, partial [Sus scrofa]"
gnl|UG|Ssc#S46879407	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa retinoic acid receptor, alpha (RARA), mRNA /cds=p(1,3252) /gb=XM_001924386 /gi=194037339 /ug=Ssc.15828 /len=3480"	-	-	-	-
gnl|UG|Ssc#S35167131	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:LVRM10030G11, expressed in liver /gb=AK232813 /gi=115552608 /ug=Ssc.6627 /len=1860"	-	GO:0005488//binding	-	gi|296434461|sp|Q3SX20.2|CQ059_BOVIN/5.7088e-107/RecName: Full=Uncharacterized protein C17orf59 homolog
gnl|UG|Ssc#S58314937	281	80.9	99	28.3	231	69.42	"PREDICTED: Sus scrofa 40S ribosomal protein S27-like (LOC100519811), mRNA /cds=p(328,582) /gb=XM_003121467 /gi=311244618 /ug=Ssc.25448 /len=754"	GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0090079;GO:0005198//structural molecule activity;GO:0016505//apoptotic protease activator activity;GO:0043169//cation binding	"GO:0006412//translation;GO:0008630//DNA damage response, signal transduction resulting in induction of apoptosis;GO:0006259//DNA metabolic process;GO:0051345//positive regulation of hydrolase activity;GO:0000077//DNA damage checkpoint;GO:0045767//regulation of anti-apoptosis"	gi|109104395|ref|XP_001097084.1|/1.36113e-39/PREDICTED: 40S ribosomal protein S27-like [Macaca mulatta]
gnl|UG|Ssc#S35170080	6	1.73	9	2.57	8	2.4	"Sus scrofa mRNA, clone:LNG010068H04, expressed in lung /gb=AK232038 /gi=115549759 /ug=Ssc.7735 /len=1646"	GO:0015629//actin cytoskeleton	GO:0008092//cytoskeletal protein binding	GO:0008064//regulation of actin polymerization or depolymerization	gi|73958091|ref|XP_536873.2|/0/PREDICTED: similar to actin related protein 2/3 complex subunit 1A [Canis familiaris]
gnl|UG|Ssc#S55291364	0	0	0	0	3	0.9	"FS646784 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10086B02 5', mRNA sequence /clone=BFLT10086B02 /clone_end=5' /gb=FS646784 /gi=288291050 /ug=Ssc.87593 /len=855"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity	GO:0035556//intracellular signal transduction;GO:0043087//regulation of GTPase activity;GO:0009966//regulation of signal transduction	gi|114632109|ref|XP_001161210.1|/5.09759e-137/PREDICTED: Rho GTPase activating protein 19 isoform 3 [Pan troglodytes]
gnl|UG|Ssc#S58313897	2	0.58	3	0.86	2	0.6	"PREDICTED: Sus scrofa kinesin light chain 2, transcript variant 1 (KLC2), mRNA /cds=p(84,1952) /gb=XM_003122503 /gi=311247235 /ug=Ssc.5756 /len=2818"	GO:0005875//microtubule associated complex;GO:0044444//cytoplasmic part;GO:0042995//cell projection	GO:0005488//binding;GO:0003774//motor activity	GO:0010970//microtubule-based transport;GO:0007599//hemostasis	gi|311247236|ref|XP_003122551.1|/0/PREDICTED: kinesin light chain 2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58309281	23	6.62	2	0.57	16	4.81	"PREDICTED: Sus scrofa alpha-actinin-4-like (LOC100517284), mRNA /cds=p(1,4266) /gb=XM_003127120 /gi=311257526 /ug=Ssc.48114 /len=4266"	GO:0031981//nuclear lumen;GO:0032991//macromolecular complex;GO:0032432//actin filament bundle;GO:0031091//platelet alpha granule;GO:0042995//cell projection	GO:0005102//receptor binding;GO:0003779//actin binding;GO:0046872//metal ion binding;GO:0042802//identical protein binding	GO:0007599//hemostasis;GO:0032414//positive regulation of ion transmembrane transporter activity;GO:0006887//exocytosis;GO:0007015//actin filament organization;GO:0006915//apoptosis;GO:0045807//positive regulation of endocytosis;GO:0006950//response to stress;GO:0001775//cell activation;GO:0048523//negative regulation of cellular process	gi|311257527|ref|XP_003127168.1|/0/PREDICTED: alpha-actinin-4-like [Sus scrofa]
gnl|UG|Ssc#S46879049	5	1.44	13	3.72	8	2.4	"PREDICTED: Sus scrofa cyclin-K-like (LOC100157799), mRNA /cds=p(1,1749) /gb=XM_001925518 /gi=194038090 /ug=Ssc.5131 /len=2477"	-	GO:0005488//binding	"GO:0006351//transcription, DNA-dependent;GO:0051726//regulation of cell cycle;GO:0000087//M phase of mitotic cell cycle"	gi|194038091|ref|XP_001925553.1|/3.19972e-164/PREDICTED: cyclin-K-like [Sus scrofa]
gnl|UG|Ssc#S58309631	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa lipase maturation factor 2-like (LOC100518488), mRNA /cds=p(1,2103) /gb=XM_003126775 /gi=311256805 /ug=Ssc.15646 /len=2571"	-	-	-	-
gnl|UG|Ssc#S58312546	3	0.86	4	1.14	0	0	"PREDICTED: Sus scrofa aminopeptidase Q-like (LOC100521657), mRNA /cds=p(1,2979) /gb=XM_003123852 /gi=311249988 /ug=Ssc.47692 /len=4194"	GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding;GO:0070011	GO:0019538//protein metabolic process	gi|311249989|ref|XP_003123900.1|/0/PREDICTED: aminopeptidase Q-like [Sus scrofa]
gnl|UG|Ssc#S46877865	52	14.97	129	36.87	28	8.41	"PREDICTED: Sus scrofa sister chromatid cohesion protein PDS5 homolog B-like (LOC100154396), mRNA /cds=p(1,2145) /gb=XM_001924396 /gi=311266121 /ug=Ssc.8644 /len=3322"	GO:0044427;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0005515//protein binding;GO:0032559	GO:0008283//cell proliferation;GO:0000070//mitotic sister chromatid segregation	gi|311266122|ref|XP_001924431.2|/0/PREDICTED: sister chromatid cohesion protein PDS5 homolog B-like [Sus scrofa]
gnl|UG|Ssc#S18551614	12	3.45	0	0	8	2.4	"BX920265 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0003.b.15 5prim, mRNA sequence /clone=scan0003.b.15 /clone_end=5' /gb=BX920265 /gi=90241237 /ug=Ssc.33264 /len=868"	GO:0031981//nuclear lumen	GO:0032559	GO:0006396//RNA processing;GO:0001558//regulation of cell growth	gi|311248718|ref|XP_003123273.1|/6.21459e-138/PREDICTED: suppressor of SWI4 1 homolog [Sus scrofa]
gnl|UG|Ssc#S58303624	7	2.02	4	1.14	3	0.9	"PREDICTED: Sus scrofa dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A (DYRK1A), mRNA /cds=p(76,2370) /gb=XM_003132770 /gi=311270228 /ug=Ssc.40565 /len=2425"	GO:0016604//nuclear body	GO:0004713//protein tyrosine kinase activity;GO:0005515//protein binding;GO:0032559	GO:0048731;GO:0006468//protein phosphorylation;GO:0006897//endocytosis	gi|311270229|ref|XP_003132818.1|/0/PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1A-like [Sus scrofa]
gnl|UG|Ssc#S46876270	33	9.5	20	5.72	33	9.92	"PREDICTED: Sus scrofa ATP-binding cassette, sub-family B, member 6 (LOC100155585), mRNA /cds=p(1,2589) /gb=XM_001928131 /gi=311273094 /ug=Ssc.19041 /len=2760"	GO:0043234//protein complex;GO:0031306//intrinsic to mitochondrial outer membrane	"GO:0032559;GO:0005506//iron ion binding;GO:0046915//transition metal ion transmembrane transporter activity;GO:0042626//ATPase activity, coupled to transmembrane movement of substances"	GO:0015691//cadmium ion transport;GO:0051181//cofactor transport;GO:0006778//porphyrin metabolic process;GO:0009207;GO:0009636//response to toxin;GO:0006875//cellular metal ion homeostasis	"gi|311273095|ref|XP_001928166.2|/0/PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S35168616	55	15.83	84	24.01	98	29.45	"Sus scrofa mRNA, clone:THY010048G05, expressed in thymus /gb=AK238935 /gi=115551074 /ug=Ssc.1883 /len=2052"	GO:0012505//endomembrane system;GO:0044431//Golgi apparatus part;GO:0005764//lysosome;GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding;GO:0003824//catalytic activity	-	"gi|311255812|ref|XP_003126380.1|/2.22959e-75/PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase MARCH9-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58309446	0	0	0	0	0	0	"PREDICTED: Sus scrofa SET domain containing 6 (SETD6), mRNA /cds=p(1,1347) /gb=XM_003126953 /gi=311257192 /ug=Ssc.47782 /len=1938"	GO:0043231//intracellular membrane-bounded organelle	GO:0008134//transcription factor binding;GO:0008276//protein methyltransferase activity	GO:0043433//negative regulation of transcription factor activity;GO:0018022//peptidyl-lysine methylation;GO:0031347//regulation of defense response	gi|311257193|ref|XP_003127001.1|/0/PREDICTED: SET domain-containing protein 6-like [Sus scrofa]
gnl|UG|Ssc#S49954370	3	0.86	0	0	0	0	"Sus scrofa docking protein 1 (DOK1) mRNA, complete cds /cds=p(11,1462) /gb=FJ438468 /gi=217874434 /ug=Ssc.47360 /len=1907"	GO:0044444//cytoplasmic part	GO:0005102//receptor binding	GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007264//small GTPase mediated signal transduction	gi|219521980|ref|NP_001137177.1|/0/docking protein 1 [Sus scrofa]
gnl|UG|Ssc#S58302369	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa transcription factor TFIIIB component B'' homolog (LOC100517687), partial mRNA /cds=p(243,3943) /gb=XM_003134028 /gi=311273863 /ug=Ssc.75778 /len=3943"	-	-	-	"gi|311273864|ref|XP_003134076.1|/0/PREDICTED: transcription factor TFIIIB component B'' homolog, partial [Sus scrofa]"
gnl|UG|Ssc#S55321665	2	0.58	10	2.86	10	3.01	"Sus scrofa mRNA, clone:ITT010039C10, expressed in small intestine /gb=AK345022 /gi=288783207 /ug=Ssc.8964 /len=1768"	-	-	-	gi|311248228|ref|XP_003123032.1|/7.48956e-101/PREDICTED: r3H domain-containing protein C19orf22 homolog [Sus scrofa]
gnl|UG|Ssc#S58301516	3	0.86	11	3.14	14	4.21	"PREDICTED: Sus scrofa hypothetical protein LOC100515808 (LOC100515808), mRNA /cds=p(1,1275) /gb=XM_003134892 /gi=311275820 /ug=Ssc.55844 /len=2523"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0060089	GO:0051234//establishment of localization;GO:0007249//I-kappaB kinase/NF-kappaB cascade	gi|311275821|ref|XP_003134940.1|/0/PREDICTED: hypothetical protein LOC100515808 [Sus scrofa]
gnl|UG|Ssc#S55326492	53	15.26	73	20.87	13	3.91	"Sus scrofa mRNA, clone:OVRM10083E03, expressed in ovary /gb=AK348159 /gi=288778334 /ug=Ssc.25467 /len=1813"	GO:0031981//nuclear lumen	GO:0005488//binding	GO:0008380//RNA splicing	gi|311251250|ref|XP_003124517.1|/2.96059e-76/PREDICTED: RNA-binding protein FUS-like [Sus scrofa]
gnl|UG|Ssc#S58314652	2	0.58	3	0.86	9	2.7	"PREDICTED: Sus scrofa protein inhibitor of activated STAT, 1 (PIAS1), mRNA /cds=p(34,1962) /gb=XM_003121749 /gi=311245357 /ug=Ssc.5358 /len=2246"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0035258//steroid hormone receptor binding;GO:0019787//small conjugating protein ligase activity	GO:0007243//intracellular protein kinase cascade;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0030518//steroid hormone receptor signaling pathway;GO:0001959//regulation of cytokine-mediated signaling pathway;GO:0048232//male gamete generation;GO:0016925//protein sumoylation;GO:0051149//positive regulation of muscle cell differentiation;GO:0034622	gi|74000624|ref|XP_535524.2|/0/PREDICTED: similar to Protein inhibitor of activated STAT protein 1 (Gu binding protein) (GBP) (RNA helicase II binding protein) (DEAD/H box-binding protein 1) isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58305803	4	1.15	0	0	5	1.5	"PREDICTED: Sus scrofa serine/threonine-protein kinase Nek7-like (LOC100521742), mRNA /cds=p(17,904) /gb=XM_003130592 /gi=311265413 /ug=Ssc.58441 /len=3767"	GO:0044424//intracellular part	GO:0043169//cation binding;GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	"gi|270346335|pdb|2WQM|A/3.20467e-174/Chain A, Structure Of Apo Human Nek7"
gnl|UG|Ssc#S55318104	9	2.59	0	0	5	1.5	"FS692309 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRT10072H05 5', mRNA sequence /clone=OVRT10072H05 /clone_end=5' /gb=FS692309 /gi=288310458 /ug=Ssc.59987 /len=816"	-	-	-	gi|281348570|gb|EFB24154.1|/1.00791e-54/hypothetical protein PANDA_021359 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S39780069	22	6.33	25	7.15	37	11.12	"rpbfe0118_e20.y1 bfe Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV875347 /gi=178621275 /ug=Ssc.64639 /len=561"	-	-	-	"gi|296489264|gb|DAA31377.1|/2.5665e-21/guanylate binding protein family, member 6-like [Bos taurus]"
gnl|UG|Ssc#S58302108	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa ras and Rab interactor 2-like (LOC100512872), mRNA /cds=p(1,957) /gb=XM_003134290 /gi=311274459 /ug=Ssc.42551 /len=957"	GO:0044424//intracellular part	GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0008047//enzyme activator activity	GO:0035556//intracellular signal transduction;GO:0016192//vesicle-mediated transport	gi|311274460|ref|XP_003134338.1|/0/PREDICTED: ras and Rab interactor 2-like [Sus scrofa]
gnl|UG|Ssc#S35169840	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:LNG010110A06, expressed in lung /gb=AK232234 /gi=115549999 /ug=Ssc.24389 /len=1055"	GO:0044444//cytoplasmic part	GO:0008080//N-acetyltransferase activity	GO:0044237//cellular metabolic process	gi|311274321|ref|XP_003134284.1|/9.27493e-169/PREDICTED: arylamine N-acetyltransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S58312517	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa phosphorylated adapter RNA export protein-like (LOC100515013), mRNA /cds=p(1,1425) /gb=XM_003123890 /gi=311250046 /ug=Ssc.2708 /len=2418"	GO:0016604//nuclear body;GO:0044297//cell body;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0003676//nucleic acid binding	"GO:0006405//RNA export from nucleus;GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|311250047|ref|XP_003123938.1|/0/PREDICTED: phosphorylated adapter RNA export protein-like [Sus scrofa]
gnl|UG|Ssc#S29469949	43	12.38	66	18.87	34	10.22	"Sus scrofa inhibitor of DNA binding 2 mRNA, complete cds /cds=p(100,504) /gb=DQ116788 /gi=73921461 /ug=Ssc.14914 /len=1292"	-	-	-	gi|297265397|ref|XP_001081982.2|/7.74296e-70/PREDICTED: DNA-binding protein inhibitor ID-2-like [Macaca mulatta]
gnl|UG|Ssc#S55235991	0	0	0	0	0	0	"FS640452 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10006D12 5', mRNA sequence /clone=BFLT10006D12 /clone_end=5' /gb=FS640452 /gi=288230643 /ug=Ssc.83237 /len=783"	-	-	-	-
gnl|UG|Ssc#S39856021	0	0	6	1.72	0	0	"rcki014_k6.y1 cki Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV951103 /gi=178615735 /ug=Ssc.95405 /len=594"	GO:0012506//vesicle membrane	GO:0005543//phospholipid binding	GO:0006810//transport;GO:0009987//cellular process	gi|297675855|ref|XP_002815870.1|/1.00607e-61/PREDICTED: sorting nexin-24-like [Pongo abelii]
gnl|UG|Ssc#S35166470	0	0	2	0.57	4	1.2	"Sus scrofa mRNA, clone:LVRM10077B12, expressed in liver /gb=AK233066 /gi=115553268 /ug=Ssc.34698 /len=2273"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|194043190|ref|XP_001928943.1|/4.63882e-154/PREDICTED: protein NipSnap homolog 1 [Sus scrofa]
gnl|UG|Ssc#S23213163	0	0	3	0.86	0	0	"Sus scrofa clone Clu_3473.scr.msk.p1.Contig2, mRNA sequence /gb=AY609845 /gi=52351415 /ug=Ssc.26092 /len=2103"	GO:0016021//integral to membrane;GO:0000139//Golgi membrane	GO:0070011;GO:0005488//binding	GO:0006917//induction of apoptosis;GO:0044267//cellular protein metabolic process;GO:0006516//glycoprotein catabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0051604//protein maturation;GO:0044093;GO:0001822//kidney development;GO:0033619//membrane protein proteolysis	gi|73981275|ref|XP_860027.1|/1.01195e-123/PREDICTED: similar to anterior pharynx defective 1a homolog isoform 3 [Canis familiaris]
gnl|UG|Ssc#S46876477	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa mediator of RNA polymerase II transcription subunit 15-like (LOC100155104), mRNA /cds=p(102,2312) /gb=XM_001927287 /gi=311271079 /ug=Ssc.4441 /len=3118"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0016251//general RNA polymerase II transcription factor activity;GO:0005488//binding	"GO:0006355//regulation of transcription, DNA-dependent"	gi|311271080|ref|XP_001927322.2|/3.09206e-143/PREDICTED: mediator of RNA polymerase II transcription subunit 15-like [Sus scrofa]
gnl|UG|Ssc#S20459222	0	0	10	2.86	10	3.01	"UMC-pgvo6-003-d02 Germinal-Vesicle-Oocyte pgvo Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN032975 /gi=48727511 /ug=Ssc.41705 /len=338"	-	-	-	gi|311273803|ref|XP_003134045.1|/7.73819e-12/PREDICTED: hypothetical protein LOC100525895 [Sus scrofa]
gnl|UG|Ssc#S42528759	5	1.44	2	0.57	7	2.1	"Sus scrofa steroid receptor coactivator 1 isoform 2 (SRC1) mRNA, complete cds, alternatively spliced /cds=p(30,4229) /gb=EU346671 /gi=164523391 /ug=Ssc.24299 /len=6591"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0004468//lysine N-acetyltransferase activity;GO:0004871//signal transducer activity;GO:0051427	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0048545//response to steroid hormone stimulus;GO:0023052//signaling;GO:0016570//histone modification;GO:0033189//response to vitamin A	gi|68534998|ref|NP_001020399.1|/0/nuclear receptor coactivator 1 [Sus scrofa]
gnl|UG|Ssc#S35164039	0	0	0	0	0	0	"Sus scrofa mRNA, clone:SPL010023G09, expressed in spleen /gb=AK237320 /gi=115555687 /ug=Ssc.6570 /len=1412"	GO:0044444//cytoplasmic part;GO:0044421//extracellular region part	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0016836//hydro-lyase activity	GO:0010038//response to metal ion;GO:0051259//protein oligomerization;GO:0031667//response to nutrient levels;GO:0006779//porphyrin biosynthetic process;GO:0010033//response to organic substance	gi|62460482|ref|NP_001014895.1|/0/delta-aminolevulinic acid dehydratase [Bos taurus]
gnl|UG|Ssc#S55327030	15	4.32	46	13.15	17	5.11	"Sus scrofa mRNA, clone:OVR010067C12, expressed in ovary /gb=AK347621 /gi=288777796 /ug=Ssc.1228 /len=2227"	GO:0005815//microtubule organizing center;GO:0001674//female germ cell nucleus;GO:0016020//membrane	GO:0003779//actin binding;GO:0019901//protein kinase binding	GO:0030073//insulin secretion;GO:0015980//energy derivation by oxidation of organic compounds	gi|194216360|ref|XP_001502584.2|/3.37379e-37/PREDICTED: hypothetical protein [Equus caballus]
gnl|UG|Ssc#S40348299	81	23.32	110	31.44	43	12.92	"rnep30c_k20.y1 nep Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW442906 /gi=182759387 /ug=Ssc.69034 /len=459"	-	-	-	-
gnl|UG|Ssc#S35171226	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:ITT010103H07, expressed in intestine /gb=AK231597 /gi=115548613 /ug=Ssc.17509 /len=1260"	GO:0030532//small nuclear ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0005488//binding	"GO:0000087//M phase of mitotic cell cycle;GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|296473912|gb|DAA16027.1|/1.04177e-79/thioredoxin-like 4A [Bos taurus]
gnl|UG|Ssc#S23697587	0	0	0	0	2	0.6	"1106218 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN108690 /gi=59784932 /ug=Ssc.82596 /len=844"	GO:0016604//nuclear body	"GO:0003724//RNA helicase activity;GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0051704	gi|296235289|ref|XP_002762845.1|/3.65352e-103/PREDICTED: ATP-dependent RNA helicase DDX3X isoform 1 [Callithrix jacchus]
gnl|UG|Ssc#S35164266	32	9.21	15	4.29	18	5.41	"Sus scrofa mRNA, clone:OVR010004A02, expressed in ovary /gb=AK234073 /gi=115555460 /ug=Ssc.51022 /len=2007"	GO:0005626//insoluble fraction;GO:0005769//early endosome;GO:0031090//organelle membrane	GO:0022892;GO:0005543//phospholipid binding	"GO:0042147//retrograde transport, endosome to Golgi;GO:0009896;GO:0015031//protein transport"	gi|74000462|ref|XP_535509.2|/0/PREDICTED: similar to Sorting nexin-1 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S29971466	0	0	2	0.57	0	0	"PDUts1051B11 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1051B11 5' similar to homologue to gb|AC011379.7| Homo sapiens chromosome 5 clone CTB-131B5, complete sequence, mRNA sequence /clone=PDUts1051B11 /clone_end=5' /gb=CV868124 /gi=84122084 /ug=Ssc.36832 /len=572"	-	-	-	-
gnl|UG|Ssc#S58314930	8	2.3	39	11.15	7	2.1	"PREDICTED: Sus scrofa transcription initiation factor IIA subunit 2-like, transcript variant 3 (LOC100521701), mRNA /cds=p(387,716) /gb=XM_003121472 /gi=311244639 /ug=Ssc.7058 /len=990"	GO:0005667//transcription factor complex	"GO:0003712//transcription cofactor activity;GO:0042802//identical protein binding;GO:0008135//translation factor activity, nucleic acid binding;GO:0046983//protein dimerization activity;GO:0008134//transcription factor binding;GO:0003702//RNA polymerase II transcription factor activity"	"GO:0006412//translation;GO:0043388//positive regulation of DNA binding;GO:0051704;GO:0070897;GO:0006354//transcription elongation, DNA-dependent;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter"	gi|16758064|ref|NP_445797.1|/6.23711e-55/transcription initiation factor IIA subunit 2 [Rattus norvegicus]
gnl|UG|Ssc#S58313673	39	11.23	15	4.29	30	9.02	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase ZFP91-like (LOC100525558), mRNA /cds=p(1,1443) /gb=XM_003122738 /gi=311247700 /ug=Ssc.17389 /len=1552"	-	-	-	gi|311247701|ref|XP_003122786.1|/0/PREDICTED: e3 ubiquitin-protein ligase ZFP91-like [Sus scrofa]
gnl|UG|Ssc#S55323503	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:AMP010096D11, expressed in alveolar macrophages /gb=AK343978 /gi=288781369 /ug=Ssc.41357 /len=2144"	GO:0043231//intracellular membrane-bounded organelle	GO:0003747//translation release factor activity	GO:0006415//translational termination	"gi|194040714|ref|XP_001926694.1|/0/PREDICTED: peptide chain release factor 1, mitochondrial-like isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S55322233	0	0	2	0.57	2	0.6	"Sus scrofa mRNA, clone:DCI010094G06, expressed in dendritic cells (immature) /gb=AK344650 /gi=288782639 /ug=Ssc.76708 /len=1584"	-	-	-	-
gnl|UG|Ssc#S46879947	18	5.18	3	0.86	13	3.91	"PREDICTED: Sus scrofa pogo transposable element with ZNF domain, transcript variant 1 (POGZ), mRNA /cds=p(23,4234) /gb=XM_001929640 /gi=311254318 /ug=Ssc.26208 /len=4873"	GO:0043231//intracellular membrane-bounded organelle;GO:0000785//chromatin	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	"GO:0000070//mitotic sister chromatid segregation;GO:0043623//cellular protein complex assembly;GO:0006351//transcription, DNA-dependent"	gi|311254319|ref|XP_001929675.2|/0/PREDICTED: pogo transposable element with ZNF domain isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46876577	17	4.89	9	2.57	13	3.91	"PREDICTED: Sus scrofa splicing factor 3a, subunit 1, 120kDa, transcript variant 1 (SF3A1), mRNA /cds=p(121,2502) /gb=XM_001929231 /gi=311270923 /ug=Ssc.6690 /len=2953"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0006376//mRNA splice site selection	gi|194043216|ref|XP_001929266.1|/0/PREDICTED: splicing factor 3A subunit 1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58311713	0	0	0	0	0	0	"PREDICTED: Sus scrofa axin-1-like, transcript variant 2 (LOC100523725), mRNA /cds=p(1,2604) /gb=XM_003124694 /gi=311251694 /ug=Ssc.44082 /len=2604"	GO:0031410//cytoplasmic vesicle;GO:0043231//intracellular membrane-bounded organelle;GO:0044459//plasma membrane part;GO:0005874//microtubule	GO:0060089;GO:0019900//kinase binding;GO:0008047//enzyme activator activity;GO:0042802//identical protein binding;GO:0019904//protein domain specific binding;GO:0046332//SMAD binding	GO:0048704//embryonic skeletal system morphogenesis;GO:0006461//protein complex assembly;GO:0048468//cell development;GO:0032582//negative regulation of gene-specific transcription;GO:0035411//catenin import into nucleus;GO:0001707//mesoderm formation;GO:0014070//response to organic cyclic compound;GO:0031329;GO:0031398//positive regulation of protein ubiquitination;GO:0045596//negative regulation of cell differentiation;GO:0001934//positive regulation of protein phosphorylation;GO:0009798//axis specification;GO:0009896;GO:0000226//microtubule cytoskeleton organization;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0008219//cell death;GO:0060070//canonical Wnt receptor signaling pathway;GO:0001756//somitogenesis;GO:0043584//nose development;GO:0042787//protein ubiquitination involved in ubiquitin-dependent protein catabolic process;GO:0043410//positive regulation of MAPKKK cascade;GO:0000187//activation of MAPK activity;GO:0009855//determination of bilateral symmetry	gi|311251695|ref|XP_003124742.1|/0/PREDICTED: axin-1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S46880496	3	0.86	7	2	0	0	"PREDICTED: Sus scrofa NMDA receptor-regulated protein 2-like (LOC100157039), mRNA /cds=p(1,2934) /gb=XM_001925575 /gi=311244631 /ug=Ssc.33978 /len=4272"	GO:0043231//intracellular membrane-bounded organelle	GO:0004871//signal transducer activity	GO:0023052//signaling	gi|311244632|ref|XP_001925610.2|/0/PREDICTED: NMDA receptor-regulated protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58309199	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa DNA repair protein XRCC1-like, transcript variant 1 (LOC100519604), mRNA /cds=p(58,1971) /gb=XM_003127189 /gi=311257693 /ug=Ssc.10159 /len=2072"	GO:0031981//nuclear lumen	GO:0005488//binding	GO:0042221//response to chemical stimulus;GO:0006281//DNA repair	gi|311257694|ref|XP_003127237.1|/0/PREDICTED: DNA repair protein XRCC1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58305713	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa beta-1,4-galactosyltransferase 1-like (LOC100511655), mRNA /cds=p(190,1395) /gb=XM_003130680 /gi=311265600 /ug=Ssc.3967 /len=4391"	GO:0005911//cell-cell junction;GO:0000139//Golgi membrane;GO:0009986//cell surface;GO:0031224//intrinsic to membrane;GO:0005903//brush border;GO:0030312//external encapsulating structure;GO:0031985//Golgi cisterna	GO:0035250//UDP-galactosyltransferase activity;GO:0042802//identical protein binding;GO:0043169//cation binding;GO:0015631//tubulin binding	GO:0001525//angiogenesis;GO:0003006//developmental process involved in reproduction;GO:0048732//gland development;GO:0001763//morphogenesis of a branching structure;GO:0022603//regulation of anatomical structure morphogenesis;GO:0035036//sperm-egg recognition;GO:0006487//protein N-linked glycosylation;GO:0006915//apoptosis;GO:0019318//hexose metabolic process;GO:0006954//inflammatory response;GO:0050679//positive regulation of epithelial cell proliferation;GO:0002376//immune system process;GO:0017158//regulation of calcium ion-dependent exocytosis;GO:0030855//epithelial cell differentiation;GO:0043062//extracellular structure organization;GO:0005988	"gi|311265601|ref|XP_003130728.1|/0/PREDICTED: beta-1,4-galactosyltransferase 1-like [Sus scrofa]"
gnl|UG|Ssc#S58305379	13	3.74	29	8.29	19	5.71	"PREDICTED: Sus scrofa mitotic-spindle organizing protein 1-like (LOC100521289), mRNA /cds=p(62,301) /gb=XM_003131018 /gi=311266369 /ug=Ssc.5390 /len=2281"	GO:0000931//gamma-tubulin large complex	GO:0005488//binding	GO:0034629//cellular protein complex localization	gi|311266370|ref|XP_003131066.1|/1.19151e-24/PREDICTED: mitotic-spindle organizing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S23767532	0	0	3	0.86	0	0	"1138974 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN125151 /gi=59819430 /ug=Ssc.48662 /len=794"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0005488//binding;GO:0003712//transcription cofactor activity;GO:0034062//RNA polymerase activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0001701//in utero embryonic development	gi|308912530|ref|NP_001184240.1|/2.90199e-68/mediator of RNA polymerase II transcription subunit 21 [Canis lupus familiaris]
gnl|UG|Ssc#S58305457	6	1.73	2	0.57	9	2.7	"PREDICTED: Sus scrofa conserved oligomeric Golgi complex subunit 6-like (LOC100526131), mRNA /cds=p(1,1704) /gb=XM_003130941 /gi=311266168 /ug=Ssc.43345 /len=2126"	GO:0012505//endomembrane system;GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	-	GO:0006810//transport	gi|311266169|ref|XP_003130989.1|/0/PREDICTED: conserved oligomeric Golgi complex subunit 6-like [Sus scrofa]
gnl|UG|Ssc#S55327188	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVR010035H09, expressed in ovary /gb=AK347461 /gi=288576868 /ug=Ssc.44855 /len=3165"	GO:0043231//intracellular membrane-bounded organelle	GO:0019783//small conjugating protein-specific protease activity;GO:0004175//endopeptidase activity;GO:0005488//binding;GO:0016790//thiolester hydrolase activity	GO:0070646;GO:0019941//modification-dependent protein catabolic process	gi|194227856|ref|XP_001917109.1|/0/PREDICTED: ubiquitin specific peptidase 11 [Equus caballus]
gnl|UG|Ssc#S35171216	709	204.12	407	116.34	1121	336.89	"Sus scrofa mRNA, clone:LNG010001E10, expressed in lung /gb=AK231607 /gi=115548623 /ug=Ssc.54090 /len=1251"	GO:0031981//nuclear lumen;GO:0042598//vesicular fraction;GO:0005815//microtubule organizing center;GO:0005819//spindle;GO:0008287//protein serine/threonine phosphatase complex;GO:0031674//I band;GO:0016020//membrane	"GO:0047485//protein N-terminus binding;GO:0046872//metal ion binding;GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0019900//kinase binding;GO:0008092//cytoskeletal protein binding;GO:0016247//channel regulator activity;GO:0016791//phosphatase activity"	GO:0001775//cell activation;GO:0014808//release of sequestered calcium ion into cytosol by sarcoplasmic reticulum;GO:0003012//muscle system process;GO:0019318//hexose metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0032414//positive regulation of ion transmembrane transporter activity;GO:0051899//membrane depolarization;GO:0006887//exocytosis;GO:0022402//cell cycle process;GO:0010863//positive regulation of phospholipase C activity;GO:0051969;GO:0005977//glycogen metabolic process;GO:0006807//nitrogen compound metabolic process;GO:0006796//phosphate metabolic process;GO:0006605//protein targeting;GO:0007599//hemostasis;GO:0000910//cytokinesis;GO:0010038//response to metal ion;GO:0007267//cell-cell signaling;GO:0048747//muscle fiber development;GO:0032768;GO:0032413//negative regulation of ion transmembrane transporter activity;GO:0051099//positive regulation of binding	gi|148706686|gb|EDL38633.1|/7.89343e-80/mCG15892 [Mus musculus]
gnl|UG|Ssc#S21549297	0	0	0	0	2	0.6	"UMC-peov3-008-g12 Oviduct from a gilt in estrus peov Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO941727 /gi=51308490 /ug=Ssc.40639 /len=377"	-	-	-	-
gnl|UG|Ssc#S23693605	6	1.73	11	3.14	6	1.8	"1100527 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN104708 /gi=59779024 /ug=Ssc.84732 /len=788"	-	-	-	-
gnl|UG|Ssc#S35166083	2	0.58	7	2	5	1.5	"Sus scrofa mRNA, clone:UTR010002D06, expressed in uterus /gb=AK239842 /gi=115553655 /ug=Ssc.19660 /len=991"	GO:0035097//histone methyltransferase complex	-	-	gi|73961737|ref|XP_547606.2|/7.83799e-90/PREDICTED: similar to CG12659-PB [Canis familiaris]
gnl|UG|Ssc#S40434985	8	2.3	17	4.86	4	1.2	"rrec01_e22.y1 rec Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW529591 /gi=183082542 /ug=Ssc.62955 /len=625"	-	-	-	-
gnl|UG|Ssc#S58313195	18	5.18	6	1.72	22	6.61	"PREDICTED: Sus scrofa coactivator-associated arginine methyltransferase 1 (CARM1), mRNA /cds=p(1,1650) /gb=XM_003123208 /gi=311248663 /ug=Ssc.29506 /len=1825"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0042393//histone binding;GO:0003713//transcription coactivator activity;GO:0042802//identical protein binding;GO:0043565//sequence-specific DNA binding;GO:0008469//histone-arginine N-methyltransferase activity	"GO:0006351//transcription, DNA-dependent;GO:0035247//peptidyl-arginine omega-N-methylation;GO:0045597//positive regulation of cell differentiation;GO:0043393//regulation of protein binding;GO:0010033//response to organic substance;GO:0034969//histone arginine methylation;GO:0030520//estrogen receptor signaling pathway;GO:0006396//RNA processing;GO:0006629//lipid metabolic process;GO:0051704;GO:0003419//growth plate cartilage chondrocyte proliferation"	gi|311248664|ref|XP_003123256.1|/0/PREDICTED: histone-arginine methyltransferase CARM1 [Sus scrofa]
gnl|UG|Ssc#S35170600	14	4.03	5	1.43	18	5.41	"Sus scrofa mRNA, clone:LNG010045D04, expressed in lung /gb=AK231915 /gi=115549239 /ug=Ssc.83888 /len=2153"	-	-	-	-
gnl|UG|Ssc#S58313647	2	0.58	5	1.43	6	1.8	"PREDICTED: Sus scrofa thioredoxin-related transmembrane protein 2-like (LOC100520175), mRNA /cds=p(501,1391) /gb=XM_003122714 /gi=311247753 /ug=Ssc.54351 /len=2090"	GO:0031224//intrinsic to membrane	-	GO:0019725//cellular homeostasis	gi|311247754|ref|XP_003122762.1|/2.30259e-160/PREDICTED: thioredoxin-related transmembrane protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58311307	27	7.77	13	3.72	18	5.41	"PREDICTED: Sus scrofa vacuolar protein sorting-associated protein 54-like (LOC100519597), mRNA /cds=p(389,808) /gb=XM_003125093 /gi=311252530 /ug=Ssc.21704 /len=1339"	-	-	GO:0016197//endosome transport	gi|149727532|ref|XP_001494048.1|/4.40473e-124/PREDICTED: similar to vacuolar protein sorting 54 homolog isoform 1 [Equus caballus]
gnl|UG|Ssc#S58310415	4	1.15	4	1.14	2	0.6	"PREDICTED: Sus scrofa NADH-cytochrome b5 reductase 3-like (LOC100524254), mRNA /cds=p(117,1022) /gb=XM_003125982 /gi=311254974 /ug=Ssc.19694 /len=2051"	GO:0043234//protein complex;GO:0031966//mitochondrial membrane;GO:0019866//organelle inner membrane;GO:0000267//cell fraction	"GO:0016653//oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;GO:0050662//coenzyme binding;GO:0032559"	GO:0006766//vitamin metabolic process;GO:0003013;GO:0006694//steroid biosynthetic process;GO:0008203//cholesterol metabolic process	gi|311254975|ref|XP_003126030.1|/3.13842e-162/PREDICTED: NADH-cytochrome b5 reductase 3-like [Sus scrofa]
gnl|UG|Ssc#S58304311	33	9.5	33	9.43	38	11.42	"PREDICTED: Sus scrofa transforming growth factor beta receptor II (LOC100038019), mRNA /cds=p(1,1368) /gb=XM_003132087 /gi=311268620 /ug=Ssc.5330 /len=3803"	GO:0009986//cell surface;GO:0044459//plasma membrane part;GO:0043235//receptor complex;GO:0016021//integral to membrane;GO:0044444//cytoplasmic part	GO:0030247//polysaccharide binding;GO:0005160//transforming growth factor beta receptor binding;GO:0032559;GO:0005024//transforming growth factor beta receptor activity;GO:0019901//protein kinase binding;GO:0019838//growth factor binding;GO:0043169//cation binding	GO:0048704//embryonic skeletal system morphogenesis;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0008284//positive regulation of cell proliferation;GO:0033993//response to lipid;GO:0002517//T cell tolerance induction;GO:0002513//tolerance induction to self antigen;GO:0006897//endocytosis;GO:0001773//myeloid dendritic cell activation;GO:0022612//gland morphogenesis;GO:0008285//negative regulation of cell proliferation;GO:0007417//central nervous system development;GO:0001525//angiogenesis;GO:0046638//positive regulation of alpha-beta T cell differentiation;GO:0048645//organ formation;GO:0030323//respiratory tube development;GO:0002514;GO:0045860//positive regulation of protein kinase activity	gi|311268621|ref|XP_003132135.1|/0/PREDICTED: TGF-beta receptor type-2 [Sus scrofa]
gnl|UG|Ssc#S55319922	307	88.39	387	110.62	236	70.92	"Sus scrofa mRNA, clone:THY010096B01, expressed in thymus /gb=AK351843 /gi=288784962 /ug=Ssc.20199 /len=1254"	-	-	-	gi|293355365|ref|XP_002728669.1|/5.39377e-12/PREDICTED: hypothetical protein [Rattus norvegicus]
gnl|UG|Ssc#S36363530	24	6.91	18	5.15	18	5.41	"Sus scrofa myocyte-specific enhancer factor 2A protein (MEF2A) mRNA, complete cds /cds=p(361,1776) /gb=EF194143 /gi=122912964 /ug=Ssc.19462 /len=2818"	GO:0031981//nuclear lumen;GO:0000785//chromatin	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0019900//kinase binding	"GO:0045597//positive regulation of cell differentiation;GO:0012501//programmed cell death;GO:0006355//regulation of transcription, DNA-dependent;GO:0048513//organ development;GO:0002224//toll-like receptor signaling pathway;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0000165//MAPKKK cascade"	gi|148237121|ref|NP_001090890.1|/0/myocyte-specific enhancer factor 2A isoform 1 [Sus scrofa]
gnl|UG|Ssc#S23691765	27	7.77	10	2.86	9	2.7	"1097858 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN102864 /gi=59775640 /ug=Ssc.55352 /len=784"	GO:0012505//endomembrane system;GO:0042598//vesicular fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0005515//protein binding	GO:0008284//positive regulation of cell proliferation;GO:0000082//G1/S transition of mitotic cell cycle;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009207;GO:0009653//anatomical structure morphogenesis;GO:0007569//cell aging;GO:0046578//regulation of Ras protein signal transduction;GO:0006935//chemotaxis;GO:0007599//hemostasis;GO:0043066//negative regulation of apoptosis;GO:0051705;GO:0002376//immune system process;GO:0006275//regulation of DNA replication;GO:0051259//protein oligomerization;GO:0016192//vesicle-mediated transport;GO:0043410//positive regulation of MAPKKK cascade;GO:0048168//regulation of neuronal synaptic plasticity;GO:0006917//induction of apoptosis	gi|194218615|ref|XP_001489690.2|/4.61186e-86/PREDICTED: similar to GTPase HRas precursor (Transforming protein p21) (p21ras) (H-Ras-1) (c-H-ras) (Ha-Ras) [Equus caballus]
gnl|UG|Ssc#S35165531	40	11.52	50	14.29	36	10.82	"Sus scrofa mRNA, clone:UTR010018H04, expressed in uterus /gb=AK239990 /gi=115554195 /ug=Ssc.31257 /len=1147"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	"GO:0000245//spliceosome assembly;GO:0006405//RNA export from nucleus;GO:0006353//transcription termination, DNA-dependent"	"gi|57105666|ref|XP_534706.1|/3.31783e-98/PREDICTED: similar to Splicing factor, arginine/serine-rich 9 (Pre-mRNA splicing factor SRp30C) isoform 1 [Canis familiaris]"
gnl|UG|Ssc#S58313070	23	6.62	3	0.86	13	3.91	"PREDICTED: Sus scrofa hook homolog 2 (Drosophila) (HOOK2), mRNA /cds=p(92,2245) /gb=XM_003123331 /gi=311248918 /ug=Ssc.4342 /len=2554"	GO:0005815//microtubule organizing center;GO:0043234//protein complex;GO:0005774//vacuolar membrane	GO:0015631//tubulin binding	GO:0007041//lysosomal transport;GO:0007010//cytoskeleton organization;GO:0007033//vacuole organization;GO:0016197//endosome transport	gi|311248919|ref|XP_003123379.1|/0/PREDICTED: protein Hook homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S46881184	0	0	5	1.43	2	0.6	"PREDICTED: Sus scrofa leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA /cds=p(280,2451) /gb=XM_001924698 /gi=194033613 /ug=Ssc.24159 /len=2451"	GO:0044424//intracellular part	GO:0046914//transition metal ion binding;GO:0005102//receptor binding;GO:0019787//small conjugating protein ligase activity	GO:0046753;GO:0016567//protein ubiquitination;GO:0009057//macromolecule catabolic process;GO:0030100//regulation of endocytosis	gi|194033614|ref|XP_001924733.1|/0/PREDICTED: e3 ubiquitin-protein ligase LRSAM1-like [Sus scrofa]
gnl|UG|Ssc#S18378917	0	0	0	0	2	0.6	"923476 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK459026 /gi=40830307 /ug=Ssc.70852 /len=823"	-	-	-	gi|311265354|ref|XP_003130613.1|/1.35336e-06/PREDICTED: protein FAM36A-like [Sus scrofa]
gnl|UG|Ssc#S58306247	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa collagen, type I, alpha 2 (COL1A2), mRNA /cds=p(222,4322) /gb=XM_003130149 /gi=311264502 /ug=Ssc.9362 /len=5172"	GO:0005578//proteinaceous extracellular matrix	GO:0005515//protein binding	GO:0009987//cellular process;GO:0050896//response to stimulus;GO:0048731;GO:0065007//biological regulation;GO:0009653//anatomical structure morphogenesis;GO:0016043//cellular component organization	gi|311264503|ref|XP_003130197.1|/0/PREDICTED: collagen alpha-2(I) chain [Sus scrofa]
gnl|UG|Ssc#S29975888	3	0.86	0	0	4	1.2	"PDUts1104B08 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1104B08 5' similar to homologue to ref|NM_015308.1| Homo sapiens formin binding protein 4 (FNBP4), mRNA, mRNA sequence /clone=PDUts1104B08 /clone_end=5' /gb=CV872546 /gi=84126506 /ug=Ssc.87105 /len=626"	-	-	-	gi|31873859|emb|CAD97867.1|/6.12245e-07/hypothetical protein [Homo sapiens]
gnl|UG|Ssc#S20452703	290	83.49	198	56.6	389	116.9	"UMC-p4civv1-004-c01 4-Cell-Embryo-(invivo) p4civv Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN026465 /gi=48721001 /ug=Ssc.41948 /len=390"	-	-	-	-
gnl|UG|Ssc#S20937207	15	4.32	2	0.57	7	2.1	"AJ648930 CSEQRAN19 Sus scrofa cDNA clone C0003271_A18, mRNA sequence /clone=C0003271_A18 /gb=AJ648930 /gi=49325775 /ug=Ssc.85583 /len=506"	GO:0000315//organellar large ribosomal subunit;GO:0043231//intracellular membrane-bounded organelle	GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|157786672|ref|NP_001099301.1|/5.80768e-66/39S ribosomal protein L27, mitochondrial [Rattus norvegicus] "
gnl|UG|Ssc#S58313401	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa midnolin-like (LOC100512395), mRNA /cds=p(1,1332) /gb=XM_003123011 /gi=311248250 /ug=Ssc.23464 /len=1637"	GO:0031981//nuclear lumen	-	-	gi|311248251|ref|XP_003123059.1|/7.17125e-151/PREDICTED: midnolin-like [Sus scrofa]
gnl|UG|Ssc#S40048901	856	246.45	204	58.31	432	129.83	"rese11c_l18.y1 ese Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW143808 /gi=182477465 /ug=Ssc.1320 /len=708"	GO:0043231//intracellular membrane-bounded organelle;GO:0031012//extracellular matrix	GO:0060089;GO:0048030;GO:0042802//identical protein binding;GO:0048029//monosaccharide binding	GO:0009611//response to wounding;GO:0007162//negative regulation of cell adhesion;GO:0010975//regulation of neuron projection development;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0014070//response to organic cyclic compound;GO:0006915//apoptosis;GO:0042692//muscle cell differentiation;GO:0001678//cellular glucose homeostasis;GO:0034112//positive regulation of homotypic cell-cell adhesion	gi|91207094|sp|Q49I35.3|LEG1_PIG/1.67718e-73/RecName: Full=Galectin-1; Short=Gal-1; AltName: Full=Lectin galactoside-binding soluble 1
gnl|UG|Ssc#S55320735	10	2.88	4	1.14	9	2.7	"Sus scrofa mRNA, clone:THY010008B08, expressed in thymus /gb=AK351427 /gi=288784137 /ug=Ssc.32339 /len=2641"	GO:0044424//intracellular part	GO:0046914//transition metal ion binding;GO:0008238//exopeptidase activity	GO:0019538//protein metabolic process	"gi|119594947|gb|EAW74541.1|/0/hCG2016942, isoform CRA_d [Homo sapiens]"
gnl|UG|Ssc#S35167676	0	0	0	0	0	0	"Sus scrofa mRNA, clone:THY010086E03, expressed in thymus /gb=AK239256 /gi=115552063 /ug=Ssc.44983 /len=1546"	GO:0031229	"GO:0019904//protein domain specific binding;GO:0003676//nucleic acid binding;GO:0016628//oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"	GO:0008203//cholesterol metabolic process	gi|149749211|ref|XP_001488765.1|/4.61302e-136/PREDICTED: similar to LOC509348 protein [Equus caballus]
gnl|UG|Ssc#S17514343	0	0	5	1.43	0	0	"BX668912 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0030.j.21 5prim, mRNA sequence /clone=scac0030.j.21 /clone_end=5' /gb=BX668912 /gi=90227228 /ug=Ssc.61629 /len=756"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0046983//protein dimerization activity	GO:0043009//chordate embryonic development;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|126325191|ref|XP_001363875.1|/3.80071e-38/PREDICTED: similar to transcription factor E4TF1-60 [Monodelphis domestica]
gnl|UG|Ssc#S58315168	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa glycerol-3-phosphate dehydrogenase 1-like protein-like (LOC100155892), mRNA /cds=p(1,1269) /gb=XM_003121237 /gi=311244028 /ug=Ssc.94012 /len=1269"	GO:0043234//protein complex;GO:0044424//intracellular part	"GO:0042802//identical protein binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0048037//cofactor binding;GO:0000166//nucleotide binding"	GO:0006072//glycerol-3-phosphate metabolic process	gi|311244029|ref|XP_003121285.1|/0/PREDICTED: glycerol-3-phosphate dehydrogenase 1-like protein-like [Sus scrofa]
gnl|UG|Ssc#S58314700	28	8.06	55	15.72	34	10.22	"PREDICTED: Sus scrofa lisH domain and HEAT repeat-containing protein KIAA1468-like (LOC100521354), mRNA /cds=p(246,3890) /gb=XM_003121702 /gi=311245237 /ug=Ssc.18797 /len=5582"	-	-	-	gi|311245238|ref|XP_003121750.1|/0/PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468-like [Sus scrofa]
gnl|UG|Ssc#S46879602	6	1.73	0	0	4	1.2	"PREDICTED: Sus scrofa DDB1 and CUL4 associated factor 13 (DCAF13), mRNA /cds=p(1,1635) /gb=XM_001925783 /gi=311253515 /ug=Ssc.31055 /len=2596"	GO:0031461//cullin-RING ubiquitin ligase complex;GO:0031981//nuclear lumen	-	GO:0042254//ribosome biogenesis;GO:0032446//protein modification by small protein conjugation	gi|311253516|ref|XP_001925818.2|/0/PREDICTED: DDB1- and CUL4-associated factor 13 [Sus scrofa]
gnl|UG|Ssc#S58307871	0	0	0	0	0	0	"PREDICTED: Sus scrofa HEAT repeat-containing protein 5A-like, transcript variant 1 (LOC100152987), mRNA /cds=p(1,6138) /gb=XM_003128524 /gi=311260914 /ug=Ssc.24371 /len=7324"	-	-	-	gi|311260915|ref|XP_003128572.1|/0/PREDICTED: HEAT repeat-containing protein 5A-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S18252069	7	2.02	4	1.14	12	3.61	"Sus scrofa stat1 mRNA for signal transducer and activator of transcription 1, complete cds /cds=p(1,2274) /gb=AB116564 /gi=40363628 /ug=Ssc.42622 /len=2274"	GO:0031981//nuclear lumen;GO:0043005//neuron projection;GO:0044444//cytoplasmic part	GO:0060089;GO:0001071//nucleic acid binding transcription factor activity;GO:0046872//metal ion binding;GO:0003677//DNA binding	"GO:0006351//transcription, DNA-dependent;GO:0007243//intracellular protein kinase cascade;GO:0032868//response to insulin stimulus;GO:0001959//regulation of cytokine-mediated signaling pathway;GO:0000302//response to reactive oxygen species;GO:0008284//positive regulation of cell proliferation;GO:0006915//apoptosis;GO:0012502//induction of programmed cell death;GO:0018108//peptidyl-tyrosine phosphorylation;GO:0043331//response to dsRNA;GO:0002237//response to molecule of bacterial origin;GO:0003013;GO:0031667//response to nutrient levels"	gi|47523306|ref|NP_998934.1|/0/signal transducer and activator of transcription 1 [Sus scrofa]
gnl|UG|Ssc#S35171465	24	6.91	7	2	39	11.72	"Sus scrofa mRNA, clone:OVRM10038F11, expressed in ovary /gb=AK234991 /gi=115548374 /ug=Ssc.2501 /len=2573"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|300795070|ref|NP_001179928.1|/0/dymeclin [Bos taurus]
gnl|UG|Ssc#S35167595	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:THY010094C02, expressed in thymus /gb=AK239337 /gi=115552144 /ug=Ssc.13360 /len=2159"	-	-	-	-
gnl|UG|Ssc#S46879068	104	29.94	80	22.87	105	31.56	"PREDICTED: Sus scrofa nucleoporin 153kDa (NUP153), mRNA /cds=p(1,4425) /gb=XM_001926651 /gi=311259767 /ug=Ssc.7115 /len=5808"	GO:0031981//nuclear lumen;GO:0005635//nuclear envelope	GO:0046872//metal ion binding	GO:0044238//primary metabolic process;GO:0015758//glucose transport;GO:0033036	gi|194038051|ref|XP_001926686.1|/0/PREDICTED: nuclear pore complex protein Nup153 [Sus scrofa]
gnl|UG|Ssc#S55269153	0	0	4	1.14	14	4.21	"FS700859 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010051D07 5', mRNA sequence /clone=PST010051D07 /clone_end=5' /gb=FS700859 /gi=288262259 /ug=Ssc.82015 /len=903"	-	-	-	-
gnl|UG|Ssc#S35172574	0	0	3	0.86	2	0.6	"Sus scrofa mRNA, clone:OVR010101B12, expressed in ovary /gb=AK234634 /gi=115547261 /ug=Ssc.9341 /len=1131"	GO:0000313;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|311257545|ref|XP_003127172.1|/4.92398e-62/PREDICTED: 28S ribosomal protein S12, mitochondrial-like isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S39800175	11	3.17	17	4.86	31	9.32	"rcbe08_h6.y1 cbe Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV895453 /gi=178563857 /ug=Ssc.90298 /len=603"	-	-	-	-
gnl|UG|Ssc#S58303059	52	14.97	48	13.72	111	33.36	"PREDICTED: Sus scrofa interferon regulatory factor 2-like (LOC100514496), mRNA /cds=p(58,1218) /gb=XM_003133334 /gi=311272296 /ug=Ssc.19537 /len=2245"	GO:0031981//nuclear lumen;GO:0005924//cell-substrate adherens junction	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0019221//cytokine-mediated signaling pathway;GO:0007599//hemostasis	gi|311272297|ref|XP_003133382.1|/0/PREDICTED: interferon regulatory factor 2-like [Sus scrofa]
gnl|UG|Ssc#S58304713	0	0	0	0	5	1.5	"PREDICTED: Sus scrofa tubulin delta chain-like (LOC100520097), mRNA /cds=p(87,1448) /gb=XM_003131670 /gi=311267774 /ug=Ssc.46332 /len=1854"	GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle;GO:0005813//centrosome	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0048869;GO:0043623//cellular protein complex assembly;GO:0009207;GO:0048232//male gamete generation;GO:0007017//microtubule-based process	gi|311267775|ref|XP_003131718.1|/0/PREDICTED: tubulin delta chain-like [Sus scrofa]
gnl|UG|Ssc#S20937708	18	5.18	36	10.29	18	5.41	"AJ649431 CSEQRAN19 Sus scrofa cDNA clone C0003272_H11, mRNA sequence /clone=C0003272_H11 /gb=AJ649431 /gi=49326276 /ug=Ssc.74150 /len=523"	GO:0043005//neuron projection;GO:0034385;GO:0009897//external side of plasma membrane;GO:0015630//microtubule cytoskeleton;GO:0044297//cell body;GO:0005768//endosome	GO:0008289//lipid binding;GO:0070325//lipoprotein particle receptor binding;GO:0046872//metal ion binding;GO:0005539//glycosaminoglycan binding;GO:0008047//enzyme activator activity;GO:0042802//identical protein binding;GO:0008092//cytoskeletal protein binding;GO:0046983//protein dimerization activity;GO:0015248//sterol transporter activity;GO:0071814	GO:0010467//gene expression;GO:0001935//endothelial cell proliferation;GO:0006639//acylglycerol metabolic process;GO:0010543;GO:0043405//regulation of MAP kinase activity;GO:0042157//lipoprotein metabolic process;GO:0031103//axon regeneration;GO:0015914//phospholipid transport;GO:0019935//cyclic-nucleotide-mediated signaling;GO:0055092//sterol homeostasis;GO:0010872//regulation of cholesterol esterification;GO:0008203//cholesterol metabolic process;GO:0010596//negative regulation of endothelial cell migration;GO:0071830;GO:0012502//induction of programmed cell death;GO:0070848//response to growth factor stimulus;GO:0034377;GO:0043066//negative regulation of apoptosis;GO:0050880//regulation of blood vessel size;GO:0006897//endocytosis;GO:0034645//cellular macromolecule biosynthetic process;GO:0006182//cGMP biosynthetic process;GO:0007166//cell surface receptor linked signaling pathway;GO:0034370//triglyceride-rich lipoprotein particle remodeling;GO:0048514//blood vessel morphogenesis;GO:0031331;GO:0010874//regulation of cholesterol efflux;GO:0007266//Rho protein signal transduction;GO:0010894//negative regulation of steroid biosynthetic process;GO:0006875//cellular metal ion homeostasis;GO:0032770//positive regulation of monooxygenase activity	"gi|149056721|gb|EDM08152.1|/1.27606e-90/apolipoprotein E, isoform CRA_c [Rattus norvegicus]"
gnl|UG|Ssc#S35173977	11	3.17	62	17.72	14	4.21	"Sus scrofa mRNA, clone:OVR010040B04, expressed in ovary /gb=AK234291 /gi=115545858 /ug=Ssc.48491 /len=1273"	-	GO:0046872//metal ion binding	GO:0006396//RNA processing	gi|291395436|ref|XP_002714048.1|/3.2248e-28/PREDICTED: SFRS12IP1 protein-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S35170298	6	1.73	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10093H07, expressed in ovary /gb=AK235563 /gi=115549541 /ug=Ssc.44607 /len=2824"	GO:0044444//cytoplasmic part	GO:0003723//RNA binding;GO:0046872//metal ion binding;GO:0005515//protein binding;GO:0004683//calmodulin-dependent protein kinase activity;GO:0032559	GO:0006412//translation;GO:0006796//phosphate metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006464//protein modification process	gi|149758554|ref|XP_001494206.1|/0/PREDICTED: similar to Elongation factor 2 kinase (eEF-2 kinase) (eEF-2K) (Calcium/calmodulin-dependent eukaryotic elongation factor 2 kinase) [Equus caballus]
gnl|UG|Ssc#S55326563	9	2.59	14	4	18	5.41	"Sus scrofa mRNA, clone:OVRM10062C12, expressed in ovary /gb=AK348088 /gi=288778263 /ug=Ssc.6058 /len=2067"	GO:0031981//nuclear lumen;GO:0000267//cell fraction	GO:0008138//protein tyrosine/serine/threonine phosphatase activity;GO:0004725//protein tyrosine phosphatase activity;GO:0005488//binding	GO:0033189//response to vitamin A;GO:0043627//response to estrogen stimulus;GO:0000302//response to reactive oxygen species;GO:0010038//response to metal ion;GO:0031960//response to corticosteroid stimulus;GO:0009314//response to radiation;GO:0006470//protein dephosphorylation;GO:0045767//regulation of anti-apoptosis;GO:0001704//formation of primary germ layer;GO:0000165//MAPKKK cascade	gi|311273911|ref|XP_003134093.1|/0/PREDICTED: dual specificity protein phosphatase 1-like [Sus scrofa]
gnl|UG|Ssc#S20942207	62	17.85	47	13.43	71	21.34	"AJ653930 KN277 Sus scrofa cDNA clone C0005185_F08, mRNA sequence /clone=C0005185_F08 /gb=AJ653930 /gi=49336376 /ug=Ssc.62714 /len=378"	-	-	-	-
gnl|UG|Ssc#S35173368	468	134.74	310	88.61	623	187.23	"Sus scrofa mRNA, clone:AMP010075F05, expressed in alveolar macrophage /gb=AK230986 /gi=115546467 /ug=Ssc.3259 /len=1875"	-	-	-	-
gnl|UG|Ssc#S58312703	27	7.77	33	9.43	31	9.32	"PREDICTED: Sus scrofa ribosome-releasing factor 2, mitochondrial-like (LOC100517638), mRNA /cds=p(179,2509) /gb=XM_003123702 /gi=311249665 /ug=Ssc.75468 /len=2509"	GO:0043231//intracellular membrane-bounded organelle	"GO:0017111//nucleoside-triphosphatase activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561"	GO:0006414//translational elongation;GO:0009207;GO:0032988	"gi|311249666|ref|XP_003123750.1|/0/PREDICTED: ribosome-releasing factor 2, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S46876750	117	33.68	46	13.15	59	17.73	"PREDICTED: Sus scrofa DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 (DDX55), mRNA /cds=p(108,2339) /gb=XM_001927712 /gi=311270570 /ug=Ssc.4554 /len=2883"	-	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0009207	gi|194042858|ref|XP_001927747.1|/0/PREDICTED: ATP-dependent RNA helicase DDX55 [Sus scrofa]
gnl|UG|Ssc#S58304638	6	1.73	0	0	5	1.5	"PREDICTED: Sus scrofa GPI transamidase component PIG-S-like (LOC100512191), mRNA /cds=p(31,1698) /gb=XM_003131760 /gi=311267934 /ug=Ssc.4162 /len=2511"	GO:0030176//integral to endoplasmic reticulum membrane	GO:0005488//binding;GO:0016787//hydrolase activity	GO:0006497//protein lipidation	gi|311267935|ref|XP_003131808.1|/0/PREDICTED: GPI transamidase component PIG-S-like [Sus scrofa]
gnl|UG|Ssc#S40043772	4	1.15	17	4.86	7	2.1	"reru01c_m12.y1 eru Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW138679 /gi=182543432 /ug=Ssc.32775 /len=641"	GO:0044424//intracellular part	GO:0004672//protein kinase activity;GO:0030695//GTPase regulator activity;GO:0032559	GO:0035556//intracellular signal transduction;GO:0006464//protein modification process	gi|301773254|ref|XP_002922052.1|/6.15779e-18/PREDICTED: LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase kinase 5-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55252511	0	0	0	0	0	0	"FS717620 full-length enriched swine cDNA library, adult submaxillary gland Sus scrofa cDNA clone SMG010050C04 5', mRNA sequence /clone=SMG010050C04 /clone_end=5' /gb=FS717620 /gi=288245830 /ug=Ssc.79796 /len=742"	-	-	-	-
gnl|UG|Ssc#S58305096	6	1.73	0	0	10	3.01	"PREDICTED: Sus scrofa mannose receptor, C type 2 (MRC2), mRNA /cds=p(1,4440) /gb=XM_003131303 /gi=311266989 /ug=Ssc.83077 /len=4440"	GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity;GO:0030246//carbohydrate binding	GO:0016192//vesicle-mediated transport;GO:0023052//signaling	gi|311266990|ref|XP_003131351.1|/0/PREDICTED: c-type mannose receptor 2-like [Sus scrofa]
gnl|UG|Ssc#S19540505	0	0	0	0	2	0.6	"944009 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN156601 /gi=46171031 /ug=Ssc.6383 /len=904"	-	-	-	-
gnl|UG|Ssc#S58313748	35	10.08	8	2.29	25	7.51	"PREDICTED: Sus scrofa DNA damage-binding protein 1-like, transcript variant 1 (LOC100522239), mRNA /cds=p(63,3485) /gb=XM_003122651 /gi=311247550 /ug=Ssc.17566 /len=3883"	GO:0080008//CUL4 RING ubiquitin ligase complex;GO:0031981//nuclear lumen	GO:0003677//DNA binding	GO:0007050//cell cycle arrest;GO:0006289//nucleotide-excision repair;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0051789//response to protein stimulus;GO:0051704;GO:0016567//protein ubiquitination;GO:0007166//cell surface receptor linked signaling pathway	gi|311247551|ref|XP_003122699.1|/0/PREDICTED: DNA damage-binding protein 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S6001168	0	0	0	0	2	0.6	"143751 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BE236080 /gi=9020798 /ti=448048790 /ug=Ssc.29101 /len=567"	-	"GO:0016877//ligase activity, forming carbon-sulfur bonds;GO:0022892;GO:0032559"	GO:0044238//primary metabolic process;GO:0032787//monocarboxylic acid metabolic process	gi|149702726|ref|XP_001492560.1|/1.50317e-77/PREDICTED: similar to putative non-ribosomal peptide synthetase NRPS1098; hNRPS1098 [Equus caballus]
gnl|UG|Ssc#S55327586	140	40.31	188	53.74	82	24.64	"Sus scrofa acrosomal vesicle protein 1 (ACRV1) mRNA, complete cds /cds=p(42,860) /gb=GU373674 /gi=285818401 /ug=Ssc.47157 /len=1181"	-	-	GO:0032501//multicellular organismal process	gi|305855186|ref|NP_001182249.1|/1.03245e-142/acrosomal protein SP-10 [Sus scrofa]
gnl|UG|Ssc#S29986941	0	0	0	0	0	0	"PDUts2056H05 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2056H05 5' similar to homologue to ref|NM_003573.1| Homo sapiens latent transforming growth factor beta binding protein 4 (LTBP4), mRNA, mRNA sequence /clone=PDUts2056H05 /clone_end=5' /gb=CX061417 /gi=84137559 /ug=Ssc.88860 /len=656"	GO:0031012//extracellular matrix	GO:0019838//growth factor binding	GO:0009914//hormone transport;GO:0006508//proteolysis;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway	gi|297704820|ref|XP_002829279.1|/3.47077e-112/PREDICTED: latent-transforming growth factor beta-binding protein 4-like [Pongo abelii]
gnl|UG|Ssc#S58314666	2	0.58	5	1.43	0	0	"PREDICTED: Sus scrofa snRNA-activating protein complex subunit 5-like, transcript variant 2 (LOC100157710), mRNA /cds=p(77,370) /gb=XM_003121738 /gi=311245327 /ug=Ssc.8835 /len=1282"	GO:0031981//nuclear lumen;GO:0030424//axon;GO:0000267//cell fraction;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0043025//neuronal cell body;GO:0015630//microtubule cytoskeleton;GO:0016020//membrane	GO:0031267//small GTPase binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0004712//protein serine/threonine/tyrosine kinase activity;GO:0032559;GO:0019901//protein kinase binding;GO:0004725//protein tyrosine phosphatase activity	"GO:0048858//cell projection morphogenesis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006464//protein modification process;GO:0032318//regulation of Ras GTPase activity;GO:0006940//regulation of smooth muscle contraction;GO:0031960//response to corticosteroid stimulus;GO:0007569//cell aging;GO:0016477//cell migration;GO:0032401//establishment of melanosome localization;GO:0000087//M phase of mitotic cell cycle;GO:0006935//chemotaxis;GO:0045595//regulation of cell differentiation;GO:0006368//transcription elongation from RNA polymerase II promoter;GO:0008283//cell proliferation;GO:0002224//toll-like receptor signaling pathway;GO:0051259//protein oligomerization;GO:0007030//Golgi organization;GO:0000165//MAPKKK cascade;GO:0009913//epidermal cell differentiation;GO:0001568//blood vessel development;GO:0022408//negative regulation of cell-cell adhesion;GO:0009611//response to wounding;GO:0006352//transcription initiation, DNA-dependent"	gi|311245326|ref|XP_003121785.1|/5.55718e-28/PREDICTED: snRNA-activating protein complex subunit 5-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S22278778	721	207.58	115	32.87	914	274.68	"CJ015139 full-length enriched swine cDNA library, adult mesenteric lymph node Sus scrofa cDNA clone MLN01G040093 5', mRNA sequence /clone=MLN01G040093 /clone_end=5' /gb=CJ015139 /gi=54512746 /ug=Ssc.82723 /len=759"	GO:0015935//small ribosomal subunit	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0000054//ribosomal subunit export from nucleus;GO:0019058//viral infectious cycle;GO:0007275//multicellular organismal development	gi|197127390|gb|ACH43888.1|/1.80024e-23/putative ribosomal protein S15 [Taeniopygia guttata]
gnl|UG|Ssc#S18354725	0	0	2	0.57	0	0	"893788 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK450166 /gi=40797380 /ug=Ssc.44217 /len=766"	GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0044430//cytoskeletal part	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0016192//vesicle-mediated transport;GO:0030035//microspike assembly;GO:0009207;GO:0007399//nervous system development	gi|297281516|ref|XP_002802111.1|/5.73963e-134/PREDICTED: dynamin-3-like isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S58311999	2	0.58	2	0.57	2	0.6	"PREDICTED: Sus scrofa huntingtin interacting protein 1 (HIP1), mRNA /cds=p(1,3114) /gb=XM_003124399 /gi=311251106 /ug=Ssc.21833 /len=3114"	GO:0030117//membrane coat;GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane;GO:0043232;GO:0030136//clathrin-coated vesicle	GO:0005198//structural molecule activity;GO:0005543//phospholipid binding;GO:0008092//cytoskeletal protein binding	"GO:0006351//transcription, DNA-dependent;GO:0006901//vesicle coating;GO:0006915//apoptosis;GO:0012502//induction of programmed cell death;GO:0048869;GO:0045807//positive regulation of endocytosis"	gi|311251107|ref|XP_003124447.1|/0/PREDICTED: huntingtin-interacting protein 1-like [Sus scrofa]
gnl|UG|Ssc#S20939117	8	2.3	5	1.43	7	2.1	"AJ650840 CSEQRAN19 Sus scrofa cDNA clone C0003276_H21, mRNA sequence /clone=C0003276_H21 /gb=AJ650840 /gi=49327685 /ug=Ssc.85670 /len=526"	GO:0044444//cytoplasmic part;GO:0016021//integral to membrane;GO:0005626//insoluble fraction	GO:0005488//binding	GO:0007044//cell-substrate junction assembly	"gi|148686159|gb|EDL18106.1|/7.23156e-41/CD151 antigen, isoform CRA_d [Mus musculus]"
gnl|UG|Ssc#S55322722	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:DCI010023A11, expressed in dendritic cells (immature) /gb=AK344361 /gi=288782150 /ug=Ssc.89867 /len=2397"	GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding	GO:0012501//programmed cell death	gi|311265711|ref|XP_003130783.1|/0/PREDICTED: protein FAM188A-like [Sus scrofa]
gnl|UG|Ssc#S46879125	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa solute carrier family 22, member 23 (SLC22A23), mRNA /cds=p(1,2214) /gb=XM_001927653 /gi=311259658 /ug=Ssc.24522 /len=2214"	GO:0031224//intrinsic to membrane	GO:0005215//transporter activity	GO:0006810//transport	gi|194037933|ref|XP_001927688.1|/0/PREDICTED: solute carrier family 22 member 23-like [Sus scrofa]
gnl|UG|Ssc#S58305987	32	9.21	21	6	44	13.22	"PREDICTED: Sus scrofa neudesin-like (LOC100525942), mRNA /cds=p(1,699) /gb=XM_003130415 /gi=311265040 /ug=Ssc.11715 /len=1048"	GO:0044421//extracellular region part	GO:0005506//iron ion binding;GO:0005102//receptor binding	GO:0010740//positive regulation of intracellular protein kinase cascade	gi|311265041|ref|XP_003130463.1|/3.4382e-107/PREDICTED: neudesin-like [Sus scrofa]
gnl|UG|Ssc#S35173413	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:AMP010067B06, expressed in alveolar macrophage /gb=AK230941 /gi=115546422 /ug=Ssc.93760 /len=1959"	GO:0032991//macromolecular complex;GO:0043025//neuronal cell body;GO:0042598//vesicular fraction;GO:0033267//axon part;GO:0005783//endoplasmic reticulum	GO:0046914//transition metal ion binding;GO:0045502//dynein binding;GO:0016597//amino acid binding;GO:0032559;GO:0016211//ammonia ligase activity;GO:0016831//carboxy-lyase activity	GO:0006541//glutamine metabolic process;GO:0050796//regulation of insulin secretion;GO:0008284//positive regulation of cell proliferation;GO:0051259//protein oligomerization;GO:0009746;GO:0001505//regulation of neurotransmitter levels;GO:0006536//glutamate metabolic process;GO:0050806//positive regulation of synaptic transmission	gi|262072802|dbj|BAI47709.1|/0/glutamate-ammonia ligase [Sus scrofa]
gnl|UG|Ssc#S46879746	52	14.97	82	23.44	60	18.03	"PREDICTED: Sus scrofa beta-lactamase-like protein 2-like (LOC100153212), mRNA /cds=p(105,971) /gb=XM_001924721 /gi=311253740 /ug=Ssc.26985 /len=1852"	GO:0043231//intracellular membrane-bounded organelle	GO:0003824//catalytic activity;GO:0043169//cation binding	-	gi|194036638|ref|XP_001924756.1|/1.08688e-166/PREDICTED: beta-lactamase-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58304367	14	4.03	17	4.86	11	3.31	"PREDICTED: Sus scrofa nuclear receptor corepressor 1 (NCOR1), partial mRNA /cds=p(1,5802) /gb=XM_003132031 /gi=311268486 /ug=Ssc.21335 /len=6564"	GO:0031981//nuclear lumen;GO:0016585//chromatin remodeling complex;GO:0005819//spindle;GO:0044444//cytoplasmic part	GO:0004871//signal transducer activity;GO:0030234//enzyme regulator activity;GO:0030528//transcription regulator activity;GO:0042974//retinoic acid receptor binding;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0019899//enzyme binding	"GO:0055092//sterol homeostasis;GO:0035264//multicellular organism growth;GO:0007051//spindle organization;GO:0043409//negative regulation of MAPKKK cascade;GO:0006629//lipid metabolic process;GO:0021536//diencephalon development;GO:0016575//histone deacetylation;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0007623//circadian rhythm;GO:0030218//erythrocyte differentiation;GO:0043367//CD4-positive, alpha beta T cell differentiation;GO:0015908//fatty acid transport"	"gi|311268487|ref|XP_003132079.1|/0/PREDICTED: nuclear receptor corepressor 1, partial [Sus scrofa]"
gnl|UG|Ssc#S58304302	8	2.3	2	0.57	9	2.7	"PREDICTED: Sus scrofa cytoplasmic linker associated protein 2 (CLASP2), mRNA /cds=p(1,3924) /gb=XM_003132096 /gi=311268638 /ug=Ssc.8189 /len=5574"	-	-	-	gi|311268639|ref|XP_003132144.1|/0/PREDICTED: CLIP-associating protein 2-like [Sus scrofa]
gnl|UG|Ssc#S40346881	5	1.44	0	0	7	2.1	"rnep22c_c10.y1 nep Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW441488 /gi=182836538 /ug=Ssc.91906 /len=449"	-	-	-	gi|297279486|ref|XP_001089795.2|/1.19567e-44/PREDICTED: ataxin 7-like 2 [Macaca mulatta]
gnl|UG|Ssc#S50196300	24	6.91	4	1.14	14	4.21	"susfleck_FC_N_22_H06 SUSFLECK Fat Cell Normalized Sus scrofa cDNA clone 22_H06, mRNA sequence /clone=22_H06 /gb=FD628136 /gi=220989488 /ug=Ssc.74202 /len=842"	GO:0016020//membrane;GO:0044431//Golgi apparatus part;GO:0015629//actin cytoskeleton	GO:0060089;GO:0019901//protein kinase binding;GO:0003779//actin binding;GO:0017160//Ral GTPase binding;GO:0042802//identical protein binding;GO:0017048//Rho GTPase binding;GO:0034987	GO:0007193//inhibition of adenylate cyclase activity by G-protein signaling pathway;GO:0031647//regulation of protein stability;GO:0032507//maintenance of protein location in cell;GO:0009895;GO:0043392//negative regulation of DNA binding;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0007015//actin filament organization;GO:0016197//endosome transport;GO:0007172//signal complex assembly;GO:0042307//positive regulation of protein import into nucleus	"gi|297469798|ref|XP_614269.5|/3.26025e-128/PREDICTED: filamin A, alpha [Bos taurus]"
gnl|UG|Ssc#S35168449	2	0.58	4	1.14	0	0	"Sus scrofa mRNA, clone:LVRM10002E02, expressed in liver /gb=AK232674 /gi=115551241 /ug=Ssc.18585 /len=2209"	GO:0000323//lytic vacuole;GO:0042598//vesicular fraction	"GO:0004553//hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0030246//carbohydrate binding;GO:0043167//ion binding"	GO:0006026	gi|178056516|ref|NP_001116593.1|/0/beta-glucuronidase precursor [Sus scrofa]
gnl|UG|Ssc#S58309561	13	3.74	4	1.14	4	1.2	"PREDICTED: Sus scrofa membrane-bound transcription factor peptidase, site 1 (MBTPS1), mRNA /cds=p(324,3482) /gb=XM_003126835 /gi=311256956 /ug=Ssc.10112 /len=4066"	GO:0031224//intrinsic to membrane;GO:0044432//endoplasmic reticulum part;GO:0031090//organelle membrane;GO:0012505//endomembrane system;GO:0044431//Golgi apparatus part	GO:0004175//endopeptidase activity	GO:0042306//regulation of protein import into nucleus;GO:0019538//protein metabolic process;GO:0016125//sterol metabolic process	gi|311256957|ref|XP_003126883.1|/0/PREDICTED: membrane-bound transcription factor site-1 protease-like [Sus scrofa]
gnl|UG|Ssc#S58311228	0	0	0	0	0	0	"PREDICTED: Sus scrofa s1 RNA-binding domain-containing protein 1-like (LOC100525459), mRNA /cds=p(1,2562) /gb=XM_003125173 /gi=311252691 /ug=Ssc.37493 /len=2562"	-	GO:0016787//hydrolase activity;GO:0003676//nucleic acid binding	GO:0034641//cellular nitrogen compound metabolic process	gi|311252692|ref|XP_003125221.1|/0/PREDICTED: s1 RNA-binding domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55324020	28	8.06	2	0.57	20	6.01	"Sus scrofa mRNA, clone:SPL010009D07, expressed in spleen /gb=AK350188 /gi=288780852 /ug=Ssc.2571 /len=1926"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0005488//binding;GO:0004620//phospholipase activity	GO:0006629//lipid metabolic process	gi|73947587|ref|XP_853110.1|/0/PREDICTED: similar to phospholipase D3 (predicted) isoform 2 [Canis familiaris]
gnl|UG|Ssc#S35164574	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:MLN010021B11, expressed in mesenteric lymph node /gb=AK233767 /gi=115555152 /ug=Ssc.28053 /len=2684"	GO:0043234//protein complex;GO:0016021//integral to membrane;GO:0044444//cytoplasmic part	GO:0005099//Ras GTPase activator activity;GO:0046872//metal ion binding;GO:0060089;GO:0008289//lipid binding;GO:0031267//small GTPase binding	GO:0007243//intracellular protein kinase cascade;GO:0032317//regulation of Rap GTPase activity	gi|311252851|ref|XP_003125299.1|/0/PREDICTED: ras guanyl-releasing protein 3-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58311266	8	2.3	10	2.86	14	4.21	"PREDICTED: Sus scrofa coiled-coil domain containing 88A (CCDC88A), partial mRNA /cds=p(1,5211) /gb=XM_003125135 /gi=311252612 /ug=Ssc.29299 /len=8305"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031252//cell leading edge;GO:0031410//cytoplasmic vesicle	GO:0019901//protein kinase binding;GO:0005543//phospholipid binding;GO:0042802//identical protein binding;GO:0015631//tubulin binding	GO:0008283//cell proliferation;GO:0031175//neuron projection development;GO:0032147//activation of protein kinase activity;GO:0048870//cell motility;GO:0030036//actin cytoskeleton organization;GO:0030031//cell projection assembly;GO:0006260//DNA replication;GO:0035556//intracellular signal transduction	"gi|311252613|ref|XP_003125183.1|/0/PREDICTED: girdin-like, partial [Sus scrofa]"
gnl|UG|Ssc#S55322285	21	6.05	5	1.43	14	4.21	"Sus scrofa mRNA, clone:DCI010082B05, expressed in dendritic cells (immature) /gb=AK344598 /gi=288782587 /ug=Ssc.41015 /len=1434"	-	-	-	gi|115496670|ref|NP_001068794.1|/0/protein LTV1 homolog [Bos taurus]
gnl|UG|Ssc#S35166884	52	14.97	42	12.01	31	9.32	"Sus scrofa mRNA, clone:THY010104E05, expressed in thymus /gb=AK239449 /gi=115552855 /ug=Ssc.48263 /len=1658"	-	GO:0032559	-	gi|123959774|ref|NP_001074206.1|/2.12698e-142/protein KTI12 homolog [Bos taurus]
gnl|UG|Ssc#S21502432	4	1.15	3	0.86	0	0	"Sus scrofa tumor protein p53 (TP53), mRNA /cds=p(137,1297) /gb=NM_213824 /gi=125490322 /ug=Ssc.15917 /len=1845"	-	-	-	-
gnl|UG|Ssc#S29978535	4	1.15	0	0	0	0	"PDUts1136C08 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1136C08 5' similar to homologue to ref|NM_013396.2| Homo sapiens ubiquitin specific protease 25 (USP25), mRNA, mRNA sequence /clone=PDUts1136C08 /clone_end=5' /gb=CV875193 /gi=84129153 /ug=Ssc.88548 /len=686"	GO:0043231//intracellular membrane-bounded organelle	GO:0019783//small conjugating protein-specific protease activity;GO:0016790//thiolester hydrolase activity	GO:0019941//modification-dependent protein catabolic process;GO:0043412	"gi|297287773|ref|XP_001107973.2|/2.36236e-130/PREDICTED: ubiquitin carboxyl-terminal hydrolase 25, partial [Macaca mulatta]"
gnl|UG|Ssc#S46876747	23	6.62	5	1.43	21	6.31	"PREDICTED: Sus scrofa histone-lysine N-methyltransferase SETD8-like (LOC100157725), mRNA /cds=p(1,1059) /gb=XM_001925377 /gi=194042863 /ug=Ssc.3146 /len=2658"	-	-	-	-
gnl|UG|Ssc#S58302477	0	0	2	0.57	3	0.9	"PREDICTED: Sus scrofa zinc finger protein 131-like (LOC100525619), mRNA /cds=p(1,1704) /gb=XM_003133927 /gi=311273645 /ug=Ssc.6837 /len=2835"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|311273646|ref|XP_003133975.1|/0/PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 131-like [Sus scrofa]
gnl|UG|Ssc#S55325367	25	7.2	8	2.29	31	9.32	"Sus scrofa mRNA, clone:PTG010038C03, expressed in pituitary gland /gb=AK349284 /gi=288779459 /ug=Ssc.14543 /len=3821"	GO:0044432//endoplasmic reticulum part;GO:0048770	GO:0005488//binding;GO:0004558//alpha-glucosidase activity	GO:0006487//protein N-linked glycosylation	gi|47522680|ref|NP_999069.1|/0/neutral alpha-glucosidase AB precursor [Sus scrofa]
gnl|UG|Ssc#S58312755	67	19.29	56	16.01	59	17.73	"PREDICTED: Sus scrofa calnexin-like (LOC100519184), mRNA /cds=p(181,1962) /gb=XM_003123641 /gi=311249559 /ug=Ssc.13502 /len=4286"	GO:0031224//intrinsic to membrane;GO:0044432//endoplasmic reticulum part;GO:0030425//dendrite;GO:0044297//cell body;GO:0031090//organelle membrane;GO:0030529//ribonucleoprotein complex;GO:0048770	GO:0046872//metal ion binding;GO:0035254//glutamate receptor binding;GO:0030246//carbohydrate binding	GO:0032502//developmental process;GO:0015031//protein transport;GO:0006487//protein N-linked glycosylation	gi|311249560|ref|XP_003123689.1|/0/PREDICTED: calnexin-like [Sus scrofa]
gnl|UG|Ssc#S55321075	100	28.79	73	20.87	94	28.25	"Sus scrofa mRNA, clone:LNG010024E05, expressed in lung /gb=AK345412 /gi=288783797 /ug=Ssc.48715 /len=3428"	GO:0044424//intracellular part	GO:0005083//small GTPase regulator activity	-	gi|149727391|ref|XP_001495933.1|/0/PREDICTED: pleckstrin and Sec7 domain containing 4 [Equus caballus]
gnl|UG|Ssc#S15981427	0	0	2	0.57	2	0.6	"PBL_3_C03 Porcine Brain Library Sus scrofa cDNA clone PBL 5', mRNA sequence /clone=PBL /clone_end=5' /gb=CD572489 /gi=31663556 /ug=Ssc.72162 /len=417"	GO:0030137//COPI-coated vesicle;GO:0030120//vesicle coat	GO:0019901//protein kinase binding	GO:0048200;GO:0015031//protein transport	gi|311269455|ref|XP_001926139.2|/2.35256e-32/PREDICTED: coatomer subunit beta' [Sus scrofa]
gnl|UG|Ssc#S35167000	11	3.17	10	2.86	6	1.8	"Sus scrofa mRNA, clone:LVRM10053H06, expressed in liver /gb=AK232944 /gi=115552739 /ug=Ssc.46893 /len=1292"	GO:0031224//intrinsic to membrane	-	-	gi|115495065|ref|NP_001068639.1|/1.42348e-156/coiled-coil domain-containing protein 109B [Bos taurus]
gnl|UG|Ssc#S35164834	186	53.55	456	130.35	132	39.67	"Sus scrofa mRNA, clone:LVRM10208E11, expressed in liver /gb=AK233704 /gi=115554892 /ug=Ssc.41635 /len=905"	GO:0015630//microtubule cytoskeleton;GO:0000323//lytic vacuole;GO:0005774//vacuolar membrane;GO:0012505//endomembrane system;GO:0005783//endoplasmic reticulum	GO:0004871//signal transducer activity;GO:0005102//receptor binding;GO:0015631//tubulin binding	GO:0007417//central nervous system development;GO:0007267//cell-cell signaling;GO:0007010//cytoskeleton organization;GO:0006886//intracellular protein transport	"gi|149053135|gb|EDM04952.1|/3.49384e-70/gamma-aminobutyric acid receptor associated protein, isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S20937282	62	17.85	24	6.86	16	4.81	"AJ649005 CSEQRAN19 Sus scrofa cDNA clone C0003271_E09, mRNA sequence /clone=C0003271_E09 /gb=AJ649005 /gi=49325850 /ug=Ssc.85587 /len=503"	GO:0043234//protein complex;GO:0005681//spliceosomal complex;GO:0044444//cytoplasmic part;GO:0005654//nucleoplasm	GO:0043566//structure-specific DNA binding	"GO:0051704;GO:0000377;GO:0006406//mRNA export from nucleus;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	"gi|149055045|gb|EDM06862.1|/4.38761e-38/rCG32827, isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S58302887	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa oxysterol-binding protein-related protein 6-like (LOC100519876), mRNA /cds=p(1,2136) /gb=XM_003133511 /gi=311272712 /ug=Ssc.9483 /len=2978"	-	GO:0005488//binding	GO:0051234//establishment of localization;GO:0010876	gi|311272713|ref|XP_003133559.1|/0/PREDICTED: oxysterol-binding protein-related protein 6-like [Sus scrofa]
gnl|UG|Ssc#S58308671	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa transmembrane protein 222-like (LOC100511759), mRNA /cds=p(1,630) /gb=XM_003127725 /gi=311258773 /ug=Ssc.1888 /len=1549"	GO:0031224//intrinsic to membrane	GO:0005488//binding	-	gi|311258774|ref|XP_003127773.1|/4.22354e-113/PREDICTED: transmembrane protein 222-like [Sus scrofa]
gnl|UG|Ssc#S58307772	12	3.45	2	0.57	13	3.91	"PREDICTED: Sus scrofa protein Churchill-like, transcript variant 2 (LOC100514910), mRNA /cds=p(1,423) /gb=XM_003128641 /gi=311261226 /ug=Ssc.14297 /len=2716"	-	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding	GO:0001667//ameboidal cell migration;GO:0007501//mesodermal cell fate specification	gi|311261227|ref|XP_003128689.1|/2.43972e-80/PREDICTED: protein Churchill-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55324378	4	1.15	0	0	10	3.01	"Sus scrofa mRNA, clone:ADR010077A01, expressed in adrenal gland /gb=AK343480 /gi=288780494 /ug=Ssc.19531 /len=2297"	GO:0031228//intrinsic to Golgi membrane	GO:0008375//acetylglucosaminyltransferase activity	GO:0022602//ovulation cycle process;GO:0007126//meiosis;GO:0009653//anatomical structure morphogenesis;GO:0009952//anterior/posterior pattern formation	"gi|93140999|ref|NP_001035257.1|/3.02448e-177/beta-1,3-N-acetylglucosaminyltransferase lunatic fringe isoform a preproprotein [Homo sapiens]"
gnl|UG|Ssc#S58302292	26	7.49	23	6.57	19	5.71	"PREDICTED: Sus scrofa clathrin interactor 1-like (LOC100522525), mRNA /cds=p(1,1938) /gb=XM_003134111 /gi=311274022 /ug=Ssc.56628 /len=3318"	GO:0044431//Golgi apparatus part;GO:0016023//cytoplasmic membrane-bounded vesicle	GO:0005515//protein binding	GO:0048193//Golgi vesicle transport;GO:0016044//cellular membrane organization	gi|311274023|ref|XP_003134159.1|/0/PREDICTED: LOW QUALITY PROTEIN: clathrin interactor 1-like [Sus scrofa]
gnl|UG|Ssc#S35171940	3	0.86	0	0	9	2.7	"Sus scrofa mRNA, clone:OVRM10025B04, expressed in ovary /gb=AK234871 /gi=115547895 /ug=Ssc.93854 /len=2891"	GO:0005759//mitochondrial matrix;GO:0044425//membrane part	GO:0005488//binding	-	gi|77736103|ref|NP_001029750.1|/5.96674e-125/leucine-rich repeat-containing protein 59 [Bos taurus]
gnl|UG|Ssc#S55323944	44	12.67	23	6.57	59	17.73	"Sus scrofa mRNA, clone:AMP010026D04, expressed in alveolar macrophages /gb=AK343717 /gi=288780928 /ug=Ssc.11008 /len=3702"	GO:0015629//actin cytoskeleton	GO:0008092//cytoskeletal protein binding;GO:0032559	GO:0009987//cellular process	gi|5031571|ref|NP_005713.1|/0/actin-related protein 2 isoform b [Homo sapiens]
gnl|UG|Ssc#S20936957	22	6.33	8	2.29	10	3.01	"AJ648680 CSEQRAN19 Sus scrofa cDNA clone C0003265_F14, mRNA sequence /clone=C0003265_F14 /gb=AJ648680 /gi=49325525 /ug=Ssc.85557 /len=516"	GO:0031981//nuclear lumen;GO:0042598//vesicular fraction;GO:0005815//microtubule organizing center;GO:0005819//spindle;GO:0008287//protein serine/threonine phosphatase complex;GO:0031674//I band;GO:0016020//membrane	GO:0047485//protein N-terminus binding;GO:0046872//metal ion binding;GO:0008092//cytoskeletal protein binding;GO:0019899//enzyme binding;GO:0016791//phosphatase activity	GO:0001775//cell activation;GO:0014808//release of sequestered calcium ion into cytosol by sarcoplasmic reticulum;GO:0003012//muscle system process;GO:0019318//hexose metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0032414//positive regulation of ion transmembrane transporter activity;GO:0051899//membrane depolarization;GO:0006887//exocytosis;GO:0022402//cell cycle process;GO:0010863//positive regulation of phospholipase C activity;GO:0051969;GO:0005977//glycogen metabolic process;GO:0006807//nitrogen compound metabolic process;GO:0006796//phosphate metabolic process;GO:0006605//protein targeting;GO:0007599//hemostasis;GO:0000910//cytokinesis;GO:0010038//response to metal ion;GO:0007267//cell-cell signaling;GO:0048747//muscle fiber development;GO:0032768;GO:0032413//negative regulation of ion transmembrane transporter activity	gi|296471693|gb|DAA13808.1|/3.72563e-63/calmodulin 2-like [Bos taurus]
gnl|UG|Ssc#S18379294	2	0.58	0	0	5	1.5	"929588 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK459403 /gi=40830684 /ug=Ssc.24532 /len=873"	GO:0031224//intrinsic to membrane	-	-	gi|297677154|ref|XP_002816477.1|/8.43645e-26/PREDICTED: transmembrane protein 170B-like [Pongo abelii]
gnl|UG|Ssc#S35173202	3	0.86	3	0.86	0	0	"Sus scrofa mRNA, clone:OVR010068B05, expressed in ovary /gb=AK234471 /gi=115546633 /ug=Ssc.18502 /len=2506"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0034061;GO:0046983//protein dimerization activity	GO:0006606//protein import into nucleus;GO:0000723//telomere maintenance;GO:0006261//DNA-dependent DNA replication;GO:0051320	gi|311247333|ref|XP_003122587.1|/0/PREDICTED: DNA polymerase alpha subunit B-like [Sus scrofa]
gnl|UG|Ssc#S58304531	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa uncharacterized protein C17orf85-like (LOC100519733), mRNA /cds=p(1,1848) /gb=XM_003131866 /gi=311268150 /ug=Ssc.16988 /len=3134"	-	-	-	-
gnl|UG|Ssc#S46878884	40	11.52	22	6.29	47	14.12	"PREDICTED: Sus scrofa gephyrin (GPHN), mRNA /cds=p(1,2553) /gb=XM_001925451 /gi=311261240 /ug=Ssc.48439 /len=3421"	GO:0019898//extrinsic to membrane;GO:0044459//plasma membrane part;GO:0043232	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0043169//cation binding;GO:0042802//identical protein binding;GO:0032559"	GO:0007528//neuromuscular junction development;GO:0051259//protein oligomerization;GO:0042559//pteridine-containing compound biosynthetic process;GO:0009108//coenzyme biosynthetic process;GO:0006766//vitamin metabolic process	gi|311261241|ref|XP_001925486.2|/0/PREDICTED: LOW QUALITY PROTEIN: gephyrin [Sus scrofa]
gnl|UG|Ssc#S31101417	10	2.88	50	14.29	7	2.1	"1496690 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY405255 /gi=87206558 /ug=Ssc.89010 /len=745"	GO:0044421//extracellular region part	GO:0061135;GO:0005515//protein binding;GO:0004942//anaphylatoxin receptor activity	GO:0007166//cell surface receptor linked signaling pathway;GO:0042221//response to chemical stimulus;GO:0007599//hemostasis;GO:0002455//humoral immune response mediated by circulating immunoglobulin;GO:0001905;GO:0001819//positive regulation of cytokine production;GO:0001794;GO:0045765//regulation of angiogenesis;GO:0045807//positive regulation of endocytosis;GO:0010466//negative regulation of peptidase activity	gi|290543340|ref|NP_001166374.1|/2.68954e-106/complement C3 preproprotein [Cavia porcellus]
gnl|UG|Ssc#S39984085	0	0	0	0	2	0.6	"rebs16c_c13.y1 ebs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW079150 /gi=181328257 /ug=Ssc.66886 /len=634"	GO:0015935//small ribosomal subunit	-	GO:0006412//translation	gi|300872546|gb|ADK39026.1|/5.81677e-21/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S58308101	93	26.78	35	10	210	63.11	"PREDICTED: Sus scrofa uncharacterized protein C6orf136 homolog, transcript variant 2 (LOC100152775), mRNA /cds=p(92,1039) /gb=XM_003128293 /gi=311260095 /ug=Ssc.71745 /len=1223"	-	-	-	gi|73972140|ref|XP_532058.2|/6.98153e-150/PREDICTED: similar to Protein C6orf136 [Canis familiaris]
gnl|UG|Ssc#S48375214	0	0	0	0	0	0	"Sus scrofa solute carrier family 30 member 1 (slc30A1) mRNA, complete cds /cds=p(14,1534) /gb=FJ374262 /gi=210148520 /ug=Ssc.4905 /len=1684"	GO:0043227//membrane-bounded organelle;GO:0042383//sarcolemma;GO:0031224//intrinsic to membrane	GO:0046915//transition metal ion transmembrane transporter activity;GO:0005246//calcium channel regulator activity	GO:0015691//cadmium ion transport;GO:0007269//neurotransmitter secretion;GO:0034766//negative regulation of ion transmembrane transport;GO:0043009//chordate embryonic development;GO:0009636//response to toxin;GO:0070588//calcium ion transmembrane transport;GO:0006875//cellular metal ion homeostasis;GO:0071578	gi|213021239|ref|NP_001132942.1|/0/zinc transporter 1 [Sus scrofa]
gnl|UG|Ssc#S46876741	0	0	5	1.43	0	0	"PREDICTED: Sus scrofa 2-oxoglutarate and iron-dependent oxygenase domain containing 2 (OGFOD2), mRNA /cds=p(581,1633) /gb=XM_001928564 /gi=311270579 /ug=Ssc.48065 /len=1693"	-	"GO:0046914//transition metal ion binding;GO:0019842//vitamin binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	GO:0008152//metabolic process	gi|194042877|ref|XP_001928599.1|/0/PREDICTED: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 [Sus scrofa]
gnl|UG|Ssc#S46876487	26	7.49	0	0	5	1.5	"PREDICTED: Sus scrofa phosphatidylinositol 4-kinase, catalytic, alpha (PI4KA), mRNA /cds=p(1,6303) /gb=XM_001929569 /gi=311271048 /ug=Ssc.24462 /len=6303"	GO:0000139//Golgi membrane;GO:0016023//cytoplasmic membrane-bounded vesicle	GO:0001727//lipid kinase activity;GO:0032559	GO:0046488//phosphatidylinositol metabolic process;GO:0007267//cell-cell signaling;GO:0046474//glycerophospholipid biosynthetic process;GO:0048017//inositol lipid-mediated signaling	gi|311271049|ref|XP_001929604.2|/0/PREDICTED: phosphatidylinositol 4-kinase alpha [Sus scrofa]
gnl|UG|Ssc#S35169272	93	26.78	16	4.57	69	20.74	"Sus scrofa mRNA, clone:LVR010038C02, expressed in liver /gb=AK232397 /gi=115550567 /ug=Ssc.17527 /len=2662"	GO:0000267//cell fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane	-	GO:0006915//apoptosis;GO:0048232//male gamete generation;GO:0030323//respiratory tube development	gi|291389104|ref|XP_002711141.1|/5.66061e-106/PREDICTED: testis enhanced gene transcript (BAX inhibitor 1) [Oryctolagus cuniculus]
gnl|UG|Ssc#S55292253	9	2.59	2	0.57	6	1.8	"FS659006 full-length enriched swine cDNA library, adult colon Sus scrofa cDNA clone CLNT10025C01 5', mRNA sequence /clone=CLNT10025C01 /clone_end=5' /gb=FS659006 /gi=288292679 /ug=Ssc.93521 /len=819"	GO:0044424//intracellular part	GO:0003729//mRNA binding;GO:0030371//translation repressor activity	GO:0006446//regulation of translational initiation	gi|311252422|ref|XP_003125090.1|/2.76387e-52/PREDICTED: polyadenylate-binding protein-interacting protein 2B-like [Sus scrofa]
gnl|UG|Ssc#S23758059	2	0.58	0	0	2	0.6	"1115189 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN115678 /gi=59809938 /ug=Ssc.11985 /len=871"	GO:0005737//cytoplasm;GO:0030532//small nuclear ribonucleoprotein complex	GO:0005488//binding	GO:0000956//nuclear-transcribed mRNA catabolic process	gi|301753917|ref|XP_002912773.1|/5.84243e-27/PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35164115	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:SPL010016D09, expressed in spleen /gb=AK237244 /gi=115555611 /ug=Ssc.53834 /len=1320"	GO:0044424//intracellular part	-	GO:0006959//humoral immune response;GO:0002762//negative regulation of myeloid leukocyte differentiation;GO:0002252	gi|92097580|gb|AAI14894.1|/2.23757e-80/C1QC protein [Bos taurus]
gnl|UG|Ssc#S18306340	2	0.58	0	0	0	0	"BP444002 full-length enriched swine cDNA library, adult liver Sus scrofa cDNA clone LVR010034D05 5', mRNA sequence /clone=LVR010034D05 /clone_end=5' /gb=BP444002 /gi=40434069 /ug=Ssc.84329 /len=789"	GO:0042575;GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0034061	GO:0006260//DNA replication;GO:0006301//postreplication repair	gi|296484157|gb|DAA26272.1|/7.53521e-145/DNA-directed DNA polymerase delta 1-like [Bos taurus]
gnl|UG|Ssc#S58305110	39	11.23	8	2.29	21	6.31	"PREDICTED: Sus scrofa SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like (LOC100512367), mRNA /cds=p(289,1884) /gb=XM_003131288 /gi=311266960 /ug=Ssc.6408 /len=2786"	GO:0070603//SWI/SNF-type complex	GO:0005488//binding;GO:0003712//transcription cofactor activity	"GO:0006325//chromatin organization;GO:0006355//regulation of transcription, DNA-dependent"	gi|311266961|ref|XP_003131336.1|/0/PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like [Sus scrofa]
gnl|UG|Ssc#S55287409	11	3.17	14	4	10	3.01	"FS702602 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010073F11 5', mRNA sequence /clone=PST010073F11 /clone_end=5' /gb=FS702602 /gi=288285108 /ug=Ssc.53977 /len=884"	GO:0032991//macromolecular complex;GO:0043005//neuron projection;GO:0005624//membrane fraction;GO:0044297//cell body;GO:0031252//cell leading edge;GO:0048770;GO:0030667//secretory granule membrane;GO:0044425//membrane part;GO:0005769//early endosome;GO:0030136//clathrin-coated vesicle	GO:0032561;GO:0005515//protein binding;GO:0017111//nucleoside-triphosphatase activity	GO:0007599//hemostasis;GO:0014909//smooth muscle cell migration;GO:0006898//receptor-mediated endocytosis;GO:0048168//regulation of neuronal synaptic plasticity;GO:0009207;GO:0008284//positive regulation of cell proliferation;GO:0035556//intracellular signal transduction	gi|296491534|gb|DAA33577.1|/1.03973e-79/ras-related protein Rab-5A [Bos taurus]
gnl|UG|Ssc#S58311072	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa additional sex combs like 2 (Drosophila) (ASXL2), mRNA /cds=p(1,3348) /gb=XM_003125333 /gi=311253007 /ug=Ssc.94921 /len=3348"	-	-	-	gi|311253008|ref|XP_003125381.1|/0/PREDICTED: putative Polycomb group protein ASXL2-like [Sus scrofa]
gnl|UG|Ssc#S21559609	0	0	0	0	2	0.6	"UMC-p8mm1-001-c10 8mm ovarian follicle p8mm Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO947631 /gi=51314390 /ug=Ssc.53011 /len=235"	-	-	-	-
gnl|UG|Ssc#S55326096	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10202A05, expressed in ovary /gb=AK348555 /gi=288778730 /ug=Ssc.76216 /len=1724"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0046983//protein dimerization activity	GO:0043009//chordate embryonic development;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	"gi|194226157|ref|XP_001915130.1|/1.38494e-51/PREDICTED: GA binding protein transcription factor, alpha subunit 60kDa [Equus caballus]"
gnl|UG|Ssc#S35174076	43	12.38	30	8.58	46	13.82	"Sus scrofa mRNA, clone:OVR010025G11, expressed in ovary /gb=AK234192 /gi=115545759 /ug=Ssc.25213 /len=1474"	GO:0031224//intrinsic to membrane;GO:0005746//mitochondrial respiratory chain	GO:0016462//pyrophosphatase activity;GO:0032559	GO:0006996//organelle organization;GO:0010257;GO:0017062//respiratory chain complex III assembly;GO:0008535//respiratory chain complex IV assembly	gi|296205606|ref|XP_002749839.1|/0/PREDICTED: mitochondrial chaperone BCS1 isoform 7 [Callithrix jacchus]
gnl|UG|Ssc#S58306599	2	0.58	4	1.14	9	2.7	"PREDICTED: Sus scrofa myotubularin-related protein 2-like (LOC100518140), mRNA /cds=p(155,2086) /gb=XM_003129797 /gi=311263788 /ug=Ssc.9420 /len=3310"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0042802//identical protein binding;GO:0004721//phosphoprotein phosphatase activity	GO:0006470//protein dephosphorylation;GO:0051259//protein oligomerization	gi|311263789|ref|XP_003129845.1|/0/PREDICTED: myotubularin-related protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58314999	6	1.73	8	2.29	3	0.9	"PREDICTED: Sus scrofa cell cycle control protein 50A-like (LOC100514263), mRNA /cds=p(1,978) /gb=XM_003121404 /gi=311244452 /ug=Ssc.10003 /len=4202"	GO:0031224//intrinsic to membrane	-	-	gi|311244453|ref|XP_003121452.1|/2.57735e-180/PREDICTED: cell cycle control protein 50A-like [Sus scrofa]
gnl|UG|Ssc#S56348223	16	4.61	32	9.15	23	6.91	"Sus scrofa breed Meishan outer dense fiber 2 (ODF2) mRNA, complete cds /cds=p(197,2629) /gb=HM138510 /gi=299818502 /ug=Ssc.63268 /len=3765"	GO:0044447//axoneme part;GO:0005819//spindle;GO:0005813//centrosome	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0048232//male gamete generation;GO:0022402//cell cycle process;GO:0048869	gi|301173563|ref|NP_001180376.1|/0/outer dense fiber protein 2 [Sus scrofa]
gnl|UG|Ssc#S23213055	39	11.23	50	14.29	30	9.02	"Sus scrofa clone Clu_47347.scr.msk.p1.Contig2, mRNA sequence /gb=AY609953 /gi=52351523 /ug=Ssc.11211 /len=814"	GO:0044464//cell part	-	-	"gi|119595248|gb|EAW74842.1|/9.71714e-42/chromosome 11 open reading frame 51, isoform CRA_d [Homo sapiens]"
gnl|UG|Ssc#S55318799	3	0.86	2	0.57	0	0	"Sus scrofa mRNA, clone:UTR010064F01, expressed in uterus /gb=AK352371 /gi=288786085 /ug=Ssc.21214 /len=2831"	GO:0005635//nuclear envelope;GO:0032991//macromolecular complex	GO:0005488//binding	GO:0050658//RNA transport;GO:0042221//response to chemical stimulus	gi|301783917|ref|XP_002927389.1|/0/PREDICTED: major vault protein-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S24317995	2	0.58	0	0	0	0	"Sus scrofa COL5A3 mRNA for procollagen alpha 3(V), complete cds /cds=p(9,5255) /gb=AB191305 /gi=62086219 /ug=Ssc.16327 /len=5738"	-	-	-	-
gnl|UG|Ssc#S35164081	64	18.43	81	23.15	56	16.83	"Sus scrofa mRNA, clone:SPL010019H12, expressed in spleen /gb=AK237278 /gi=115555645 /ug=Ssc.89682 /len=2205"	-	-	GO:0007165//signal transduction	gi|301767116|ref|XP_002918973.1|/2.16717e-116/PREDICTED: ankyrin repeat and SOCS box protein 4-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35168260	14	4.03	20	5.72	29	8.72	"Sus scrofa mRNA, clone:OVRM10153A11, expressed in ovary /gb=AK236108 /gi=115551430 /ug=Ssc.22350 /len=1688"	GO:0043234//protein complex;GO:0033011//perinuclear theca;GO:0031252//cell leading edge;GO:0015629//actin cytoskeleton	GO:0008092//cytoskeletal protein binding	GO:0030835//negative regulation of actin filament depolymerization;GO:0007599//hemostasis;GO:0030031//cell projection assembly	gi|55732943|emb|CAH93159.1|/1.34948e-160/hypothetical protein [Pongo abelii]
gnl|UG|Ssc#S55325062	4	1.15	14	4	3	0.9	"Sus scrofa mRNA, clone:PTG010101D04, expressed in pituitary gland /gb=AK349546 /gi=288779810 /ug=Ssc.94380 /len=1648"	GO:0005770//late endosome	GO:0005488//binding	GO:0016192//vesicle-mediated transport	gi|296199794|ref|XP_002747315.1|/3.05805e-16/PREDICTED: charged multivesicular body protein 4b-like [Callithrix jacchus]
gnl|UG|Ssc#S35173403	3	0.86	0	0	5	1.5	"Sus scrofa mRNA, clone:AMP010068C04, expressed in alveolar macrophage /gb=AK230951 /gi=115546432 /ug=Ssc.16726 /len=2336"	-	-	-	-
gnl|UG|Ssc#S35170816	19	5.47	8	2.29	17	5.11	"Sus scrofa mRNA, clone:TCH010063D07, expressed in trachea /gb=AK238212 /gi=115549023 /ug=Ssc.56643 /len=1830"	GO:0005856//cytoskeleton;GO:0033267//axon part	GO:0008092//cytoskeletal protein binding;GO:0035091//phosphatidylinositol binding	GO:0016079//synaptic vesicle exocytosis;GO:0030041//actin filament polymerization;GO:0008064//regulation of actin polymerization or depolymerization	"gi|119599260|gb|EAW78854.1|/1.48155e-83/profilin 2, isoform CRA_c [Homo sapiens]"
gnl|UG|Ssc#S46880227	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa (TAF2), mRNA /cds=p(1,3318) /gb=XM_001924359 /gi=311253438 /ug=Ssc.13196 /len=4458"	GO:0005667//transcription factor complex	GO:0070011;GO:0046914//transition metal ion binding;GO:0043565//sequence-specific DNA binding	"GO:0022402//cell cycle process;GO:0006352//transcription initiation, DNA-dependent;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter"	gi|311253439|ref|XP_001924394.2|/0/PREDICTED: transcription initiation factor TFIID subunit 2 [Sus scrofa]
gnl|UG|Ssc#S5994257	0	0	2	0.57	0	0	"122050 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BE012523 /gi=8273445 /ti=447572089 /ug=Ssc.48716 /len=427"	-	-	-	-
gnl|UG|Ssc#S40213312	10	2.88	0	0	5	1.5	"rpldo0117_i12.y1 ldo Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW308219 /gi=182767842 /ug=Ssc.46845 /len=662"	-	-	-	-
gnl|UG|Ssc#S17057571	2	0.58	0	0	0	0	"H11_LKF001 UMNMPM3 Sus scrofa cDNA clone PPSL_22H11 5', mRNA sequence /clone=PPSL_22H11 /clone_end=5' /gb=CF722612 /gi=37596866 /ug=Ssc.82658 /len=637"	GO:0031981//nuclear lumen;GO:0044421//extracellular region part	GO:0060089;GO:0004175//endopeptidase activity;GO:0003676//nucleic acid binding;GO:0004866//endopeptidase inhibitor activity;GO:0019899//enzyme binding	GO:0010466//negative regulation of peptidase activity;GO:0016525//negative regulation of angiogenesis;GO:0006915//apoptosis;GO:0007162//negative regulation of cell adhesion;GO:0009966//regulation of signal transduction;GO:0030194//positive regulation of blood coagulation;GO:0045807//positive regulation of endocytosis;GO:0007569//cell aging;GO:0042742//defense response to bacterium;GO:0001819//positive regulation of cytokine production;GO:0002548//monocyte chemotaxis;GO:0008283//cell proliferation;GO:0002540//leukotriene production involved in inflammatory response;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0014909//smooth muscle cell migration;GO:0010755;GO:0032496//response to lipopolysaccharide	gi|291398741|ref|XP_002715984.1|/4.46334e-53/PREDICTED: mesoderm induction early response 1 [Oryctolagus cuniculus]
gnl|UG|Ssc#S6072902	0	0	0	0	0	0	"UNL-P-FN-bi-h-03-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-bi-h-03-0-UNL 3', mRNA sequence /clone=UNL-P-FN-bi-h-03-0-UNL /clone_end=3' /gb=BI182434 /gi=14656843 /ug=Ssc.11416 /len=674"	GO:0005622//intracellular	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding	-	gi|297283823|ref|XP_001100716.2|/3.28756e-52/PREDICTED: zinc finger protein 771-like [Macaca mulatta]
gnl|UG|Ssc#S46877935	28	8.06	15	4.29	15	4.51	"PREDICTED: Sus scrofa mitogen-activated protein kinase 14, transcript variant 1 (MAPK14), mRNA /cds=p(23,1744) /gb=XM_001929490 /gi=311260306 /ug=Ssc.11018 /len=4425"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0004712//protein serine/threonine/tyrosine kinase activity;GO:0032559	"GO:0042221//response to chemical stimulus;GO:0007599//hemostasis;GO:0045597//positive regulation of cell differentiation;GO:0006355//regulation of transcription, DNA-dependent;GO:0002224//toll-like receptor signaling pathway;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007264//small GTPase mediated signal transduction;GO:0006464//protein modification process;GO:0010212//response to ionizing radiation;GO:0001775//cell activation;GO:0000165//MAPKKK cascade"	gi|311260307|ref|XP_001929525.2|/0/PREDICTED: mitogen-activated protein kinase 14 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S39842061	7	2.02	0	0	10	3.01	"rcje05_f21.y1 cje Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV937143 /gi=178634287 /ug=Ssc.65302 /len=582"	-	-	-	-
gnl|UG|Ssc#S18546698	110	31.67	94	26.87	127	38.17	"BX915349 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0031.g.05 5prim, mRNA sequence /clone=scan0031.g.05 /clone_end=5' /gb=BX915349 /gi=90242905 /ug=Ssc.42139 /len=852"	-	-	-	-
gnl|UG|Ssc#S17503824	2	0.58	0	0	2	0.6	"879456 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF791280 /gi=37795841 /ug=Ssc.79896 /len=604"	-	-	-	gi|281485561|ref|NP_001075920.2|/1.9087e-47/myeloid/lymphoid or mixed-lineage leukemia 5 [Bos taurus]
gnl|UG|Ssc#S58310678	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa adenosine deaminase, RNA-specific (ADAR), partial mRNA /cds=p(1,3516) /gb=XM_003125745 /gi=311254195 /ug=Ssc.27355 /len=3516"	GO:0031981//nuclear lumen	GO:0043169//cation binding;GO:0003723//RNA binding;GO:0004000//adenosine deaminase activity	GO:0006396//RNA processing;GO:0016458//gene silencing;GO:0016553//base conversion or substitution editing;GO:0019221//cytokine-mediated signaling pathway	"gi|311254196|ref|XP_003125793.1|/0/PREDICTED: double-stranded RNA-specific adenosine deaminase-like, partial [Sus scrofa]"
gnl|UG|Ssc#S55322770	7	2.02	2	0.57	5	1.5	"Sus scrofa mRNA, clone:TCH010027A11, expressed in trachea /gb=AK350773 /gi=288782102 /ug=Ssc.9764 /len=1141"	GO:0043005//neuron projection;GO:0044424//intracellular part	-	-	gi|311260983|ref|XP_003128579.1|/2.58976e-119/PREDICTED: neuroguidin-like [Sus scrofa]
gnl|UG|Ssc#S58303170	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa dedicator of cytokinesis 1 (DOCK1), mRNA /cds=p(1,1173) /gb=XM_003133226 /gi=311272015 /ug=Ssc.59044 /len=1406"	GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0030695//GTPase regulator activity;GO:0019899//enzyme binding;GO:0032561;GO:0019904//protein domain specific binding	GO:0012501//programmed cell death;GO:0035556//intracellular signal transduction;GO:0006909//phagocytosis;GO:0048870//cell motility;GO:0006935//chemotaxis;GO:0007599//hemostasis;GO:0007166//cell surface receptor linked signaling pathway	gi|311272016|ref|XP_003133274.1|/0/PREDICTED: dedicator of cytokinesis protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58306704	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase-like (LOC100511030), mRNA /cds=p(38,1618) /gb=XM_003129688 /gi=311263574 /ug=Ssc.6944 /len=2220"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0000030//mannosyltransferase activity;GO:0046527//glucosyltransferase activity	GO:0006487//protein N-linked glycosylation	"gi|311263575|ref|XP_003129736.1|/0/PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase-like [Sus scrofa]"
gnl|UG|Ssc#S46881183	5	1.44	0	0	8	2.4	"PREDICTED: Sus scrofa niban-like protein 1-like (LOC100155531), mRNA /cds=p(1,2529) /gb=XM_001924714 /gi=311246473 /ug=Ssc.4690 /len=2529"	-	GO:0005488//binding	-	gi|194033616|ref|XP_001924749.1|/0/PREDICTED: niban-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S20939586	28	8.06	16	4.57	14	4.21	"AJ651309 CSEQRAN19 Sus scrofa cDNA clone C0003277_P15, mRNA sequence /clone=C0003277_P15 /gb=AJ651309 /gi=49333754 /ug=Ssc.85481 /len=521"	-	-	-	gi|297273395|ref|XP_002800612.1|/5.08479e-92/PREDICTED: 26S protease regulatory subunit 8-like isoform 4 [Macaca mulatta]
gnl|UG|Ssc#S35173189	2	0.58	19	5.43	13	3.91	"Sus scrofa mRNA, clone:OVR010070C11, expressed in ovary /gb=AK234484 /gi=115546646 /ug=Ssc.31818 /len=1364"	-	-	-	-
gnl|UG|Ssc#S34509399	0	0	3	0.86	0	0	"DB806390 full-length enriched swine cDNA library, adult alveolar macrophage Sus scrofa cDNA 3', mRNA sequence /clone=AMP010082C11 /clone_end=3' /gb=DB806390 /gi=112773464 /ug=Ssc.2212 /len=866"	GO:0031224//intrinsic to membrane;GO:0005764//lysosome;GO:0019866//organelle inner membrane;GO:0005770//late endosome;GO:0012505//endomembrane system	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination	gi|301776154|ref|XP_002923497.1|/3.32839e-83/PREDICTED: RING finger protein 13-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46879680	0	0	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein C1orf112-like (LOC100155191), mRNA /cds=p(1,2727) /gb=XM_001928004 /gi=311253865 /ug=Ssc.5983 /len=2873"	-	-	-	gi|311253866|ref|XP_001928039.2|/0/PREDICTED: uncharacterized protein C1orf112-like [Sus scrofa]
gnl|UG|Ssc#S55320819	0	0	3	0.86	2	0.6	"Sus scrofa mRNA, clone:LNG010085C12, expressed in lung /gb=AK345668 /gi=288784053 /ug=Ssc.27706 /len=1811"	GO:0031228//intrinsic to Golgi membrane	GO:0008375//acetylglucosaminyltransferase activity	GO:0048869;GO:0048731;GO:0008593//regulation of Notch signaling pathway;GO:0009653//anatomical structure morphogenesis	"gi|297702076|ref|XP_002828016.1|/2.708e-146/PREDICTED: beta-1,3-N-acetylglucosaminyltransferase radical fringe-like isoform 2 [Pongo abelii]"
gnl|UG|Ssc#S35171040	0	0	6	1.72	10	3.01	"Sus scrofa mRNA, clone:LNG010019H12, expressed in lung /gb=AK231757 /gi=115548799 /ug=Ssc.21408 /len=1716"	GO:0030867//rough endoplasmic reticulum membrane	GO:0005515//protein binding;GO:0019887//protein kinase regulator activity	GO:0051707//response to other organism;GO:0044267//cellular protein metabolic process;GO:0006508//proteolysis;GO:0033673//negative regulation of kinase activity;GO:0006950//response to stress	gi|308208140|gb|ADO20319.1|/0/P58IPK [Sus scrofa]
gnl|UG|Ssc#S58301666	0	0	3	0.86	2	0.6	"PREDICTED: Sus scrofa NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like (LOC100525371), mRNA /cds=p(106,456) /gb=XM_003134727 /gi=311275514 /ug=Ssc.22386 /len=2090"	GO:0005746//mitochondrial respiratory chain	GO:0050136//NADH dehydrogenase (quinone) activity	GO:0051234//establishment of localization;GO:0022904//respiratory electron transport chain	gi|311275515|ref|XP_003134775.1|/7.16172e-45/PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like [Sus scrofa]
gnl|UG|Ssc#S55324803	16	4.61	0	0	15	4.51	"Sus scrofa mRNA, clone:SKNB10058F07, expressed in skin /gb=AK349804 /gi=288780069 /ug=Ssc.23478 /len=1801"	-	-	-	-
gnl|UG|Ssc#S58309795	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa kinesin-like protein KIF21A-like (LOC100520674), mRNA /cds=p(1,4392) /gb=XM_003126606 /gi=311256435 /ug=Ssc.7231 /len=6074"	GO:0015630//microtubule cytoskeleton	GO:0003774//motor activity;GO:0032559	GO:0007017//microtubule-based process	gi|311256436|ref|XP_003126654.1|/0/PREDICTED: kinesin-like protein KIF21A-like [Sus scrofa]
gnl|UG|Ssc#S51841447	0	0	0	0	0	0	"Sus scrofa keratin 8 (KRT8), mRNA /cds=p(63,1532) /gb=NM_001159615 /gi=227430406 /ug=Ssc.53699 /len=1709"	GO:0031981//nuclear lumen;GO:0031674//I band;GO:0005882//intermediate filament;GO:0005886//plasma membrane	GO:0005515//protein binding	GO:0012501//programmed cell death;GO:0006996//organelle organization;GO:0000902//cell morphogenesis;GO:0019221//cytokine-mediated signaling pathway;GO:0032501//multicellular organismal process;GO:0030154//cell differentiation;GO:0006950//response to stress;GO:0009607//response to biotic stimulus	"gi|227430407|ref|NP_001153087.1|/0/keratin, type II cytoskeletal 8 [Sus scrofa]"
gnl|UG|Ssc#S40332691	421	121.21	203	58.03	417	125.32	"rnca03b_f6.y1 nca Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW427298 /gi=182740914 /ug=Ssc.20956 /len=686"	GO:0031224//intrinsic to membrane;GO:0005746//mitochondrial respiratory chain	GO:0050136//NADH dehydrogenase (quinone) activity	GO:0051234//establishment of localization;GO:0022904//respiratory electron transport chain	gi|311258138|ref|XP_003127458.1|/3.80622e-33/PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-like [Sus scrofa]
gnl|UG|Ssc#S58305371	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa LIM domain only protein 7-like (LOC100151778), mRNA /cds=p(1,804) /gb=XM_003131028 /gi=311266386 /ug=Ssc.25424 /len=1126"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation	gi|311266387|ref|XP_003131076.1|/4.44577e-156/PREDICTED: LIM domain only protein 7-like [Sus scrofa]
gnl|UG|Ssc#S58311314	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa neutral amino acid transporter A-like (LOC100518245), mRNA /cds=p(1,927) /gb=XM_003125087 /gi=311252515 /ug=Ssc.84226 /len=927"	GO:0043234//protein complex;GO:0016021//integral to membrane	GO:0005253//anion channel activity;GO:0000099;GO:0015175//neutral amino acid transmembrane transporter activity;GO:0015179//L-amino acid transmembrane transporter activity	GO:0015804//neutral amino acid transport;GO:0003333//amino acid transmembrane transport;GO:0000101//sulfur amino acid transport;GO:0015698//inorganic anion transport;GO:0006807//nitrogen compound metabolic process;GO:0015718//monocarboxylic acid transport;GO:0050877//neurological system process;GO:0015807//L-amino acid transport	gi|311252516|ref|XP_003125135.1|/5.32471e-122/PREDICTED: neutral amino acid transporter A-like [Sus scrofa]
gnl|UG|Ssc#S46880802	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa son of sevenless homolog 2 (Drosophila) (SOS2), mRNA /cds=p(1,3738) /gb=XM_001925014 /gi=311245470 /ug=Ssc.63994 /len=3738"	GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding;GO:0005088//Ras guanyl-nucleotide exchange factor activity	GO:0006917//induction of apoptosis;GO:0006935//chemotaxis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009966//regulation of signal transduction;GO:0007266//Rho protein signal transduction	gi|194034421|ref|XP_001925049.1|/0/PREDICTED: son of sevenless homolog 2 [Sus scrofa]
gnl|UG|Ssc#S35170594	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:LNG010046G07, expressed in lung /gb=AK231921 /gi=115549245 /ug=Ssc.11371 /len=1774"	-	-	-	gi|296479779|gb|DAA21894.1|/0/t-complex 11-like 1 [Bos taurus]
gnl|UG|Ssc#S58302194	56	16.12	27	7.72	27	8.11	"PREDICTED: Sus scrofa integrator complex subunit 10 (INTS10), mRNA /cds=p(118,2250) /gb=XM_003134201 /gi=311274236 /ug=Ssc.3230 /len=2417"	-	-	-	-
gnl|UG|Ssc#S46877342	4	1.15	3	0.86	3	0.9	"PREDICTED: Sus scrofa KIAA0157 (LOC100158023), mRNA /cds=p(11,1288) /gb=XM_001929015 /gi=311271993 /ug=Ssc.55530 /len=2009"	GO:0043234//protein complex	GO:0043130//ubiquitin binding	-	gi|311271994|ref|XP_001929050.2|/0/PREDICTED: hypothetical protein LOC100158023 [Sus scrofa]
gnl|UG|Ssc#S58311627	576	165.83	763	218.1	469	140.95	"PREDICTED: Sus scrofa transcription elongation factor B polypeptide 2-like, transcript variant 1 (LOC100519651), mRNA /cds=p(64,420) /gb=XM_003124746 /gi=311251878 /ug=Ssc.57965 /len=828"	GO:0000153//cytoplasmic ubiquitin ligase complex;GO:0031981//nuclear lumen	"GO:0008135//translation factor activity, nucleic acid binding;GO:0005515//protein binding;GO:0019787//small conjugating protein ligase activity;GO:0003702//RNA polymerase II transcription factor activity"	"GO:0006412//translation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0032446//protein modification by small protein conjugation;GO:0065003;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|77736578|ref|NP_001029972.1|/7.45668e-61/elongin B [Bos taurus]
gnl|UG|Ssc#S26726190	3	0.86	6	1.72	0	0	"AJ962274 KN404_2 Sus scrofa cDNA clone C0007758m20 3', mRNA sequence /clone=C0007758m20 /clone_end=3' /gb=AJ962274 /gi=74379090 /ug=Ssc.23733 /len=658"	-	-	-	-
gnl|UG|Ssc#S58303437	3	0.86	0	0	4	1.2	"PREDICTED: Sus scrofa merlin-like, transcript variant 1 (LOC100519980), mRNA /cds=p(1,1776) /gb=XM_003132957 /gi=311270895 /ug=Ssc.88201 /len=1776"	GO:0031981//nuclear lumen;GO:0032991//macromolecular complex;GO:0070161;GO:0043232;GO:0030175//filopodium;GO:0032155;GO:0000267//cell fraction;GO:0001726//ruffle;GO:0005768//endosome	GO:0005102//receptor binding	GO:0001704//formation of primary germ layer;GO:0001952//regulation of cell-matrix adhesion;GO:0042506//tyrosine phosphorylation of Stat5 protein;GO:0009888//tissue development;GO:0033673//negative regulation of kinase activity;GO:0007162//negative regulation of cell adhesion;GO:0014009//glial cell proliferation;GO:0016049//cell growth;GO:0016477//cell migration;GO:0042476//odontogenesis;GO:0006260//DNA replication;GO:0010741;GO:0032233//positive regulation of actin filament bundle assembly;GO:0034330;GO:0042503//tyrosine phosphorylation of Stat3 protein	gi|311270896|ref|XP_003133005.1|/0/PREDICTED: merlin-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S40596706	61	17.56	86	24.58	44	13.22	"Sus scrofa superkiller viralicidic activity 2-like (S. cerevisiae) (SKIV2L), mRNA /cds=p(92,3832) /gb=NM_001101817 /gi=156120139 /ug=Ssc.26302 /len=3883"	GO:0043231//intracellular membrane-bounded organelle	"GO:0003724//RNA helicase activity;GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	-	gi|156120140|ref|NP_001095287.1|/0/helicase SKI2W [Sus scrofa]
gnl|UG|Ssc#S58311040	48	13.82	37	10.58	38	11.42	"PREDICTED: Sus scrofa lysosomal-associated transmembrane protein 4A-like (LOC100516188), mRNA /cds=p(526,1227) /gb=XM_003125337 /gi=311253073 /ug=Ssc.53927 /len=1808"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0051234//establishment of localization	gi|149050909|gb|EDM03082.1|/1.59525e-122/lysosomal-associated protein transmembrane 4A [Rattus norvegicus]
gnl|UG|Ssc#S6062297	126	36.28	68	19.44	107	32.16	"MI-P-AY1-nrm-g-07-0-UI.s1 MI-P-AY1 Sus scrofa cDNA clone MI-P-AY1-nrm-g-07-0-UI 3', mRNA sequence /clone=MI-P-AY1-nrm-g-07-0-UI /clone_end=3' /gb=BI399027 /gi=15178088 /ug=Ssc.81626 /len=238"	-	-	-	-
gnl|UG|Ssc#S29974891	0	0	0	0	2	0.6	"PDUts1092F06 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1092F06 5' similar to homologue to ref|NM_014283.2| Homo sapiens chromosome 1 open reading frame 9 (C1orf9), mRNA, mRNA sequence /clone=PDUts1092F06 /clone_end=5' /gb=CV871549 /gi=84125509 /ug=Ssc.56483 /len=759"	-	-	-	-
gnl|UG|Ssc#S58310142	25	7.2	10	2.86	21	6.31	"PREDICTED: Sus scrofa Ormdl2 protein, transcript variant 2 (LOC100157122), mRNA /cds=p(152,613) /gb=XM_003126257 /gi=311255632 /ug=Ssc.32929 /len=1882"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	-	GO:0046519	gi|194037502|ref|XP_001928873.1|/1.38918e-68/PREDICTED: Ormdl2 protein isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55325142	0	0	2	0.57	7	2.1	"Sus scrofa mRNA, clone:PTG010078E12, expressed in pituitary gland /gb=AK349466 /gi=288779730 /ug=Ssc.76368 /len=1545"	-	-	-	-
gnl|UG|Ssc#S23213371	2	0.58	12	3.43	0	0	"Sus scrofa clone Clu_207459.scr.msk.p1.Contig1, mRNA sequence /gb=AY609606 /gi=52351201 /ug=Ssc.11945 /len=1096"	GO:0043232;GO:0016011//dystroglycan complex;GO:0016021//integral to membrane	GO:0005488//binding	GO:0048513//organ development;GO:0006996//organelle organization	gi|221136947|ref|NP_001137595.1|/2.20735e-152/delta-sarcoglycan [Sus scrofa]
gnl|UG|Ssc#S55319079	9	2.59	0	0	9	2.7	"Sus scrofa mRNA, clone:MLN010020B02, expressed in mesenteric lymph nodes /gb=AK346612 /gi=288785805 /ug=Ssc.10998 /len=1786"	GO:0043231//intracellular membrane-bounded organelle	GO:0004713//protein tyrosine kinase activity;GO:0032559	GO:0006468//protein phosphorylation	gi|178056669|ref|NP_001116571.1|/0/dual specificity protein kinase CLK1 [Sus scrofa]
gnl|UG|Ssc#S46878343	0	0	7	2	0	0	"PREDICTED: Sus scrofa protein KIAA1199-like (LOC100155654), mRNA /cds=p(1,3375) /gb=XM_001926356 /gi=311260634 /ug=Ssc.71782 /len=3986"	GO:0044424//intracellular part	-	-	gi|194039545|ref|XP_001926391.1|/0/PREDICTED: protein KIAA1199-like [Sus scrofa]
gnl|UG|Ssc#S46877177	44	12.67	39	11.15	35	10.52	"PREDICTED: Sus scrofa STE20-like kinase, transcript variant 2 (SLK), mRNA /cds=p(128,3841) /gb=XM_001929430 /gi=311271804 /ug=Ssc.10035 /len=5849"	GO:0016020//membrane;GO:0044424//intracellular part	"GO:0016788//hydrolase activity, acting on ester bonds;GO:0003676//nucleic acid binding;GO:0004672//protein kinase activity;GO:0032559"	GO:0006464//protein modification process;GO:0012501//programmed cell death;GO:0006281//DNA repair	gi|194041975|ref|XP_001929465.1|/0/PREDICTED: STE20-like kinase isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58315079	10	2.88	2	0.57	2	0.6	"PREDICTED: Sus scrofa glutamyl-tRNA(Gln) amidotransferase subunit A homolog, transcript variant 1 (LOC100519455), mRNA /cds=p(106,1686) /gb=XM_003121323 /gi=311244241 /ug=Ssc.23777 /len=1807"	-	"GO:0016879//ligase activity, forming carbon-nitrogen bonds;GO:0032559"	GO:0010467//gene expression	gi|311244242|ref|XP_003121371.1|/0/PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A homolog isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35165911	17	4.89	10	2.86	6	1.8	"Sus scrofa mRNA, clone:PBL010012G08, expressed in periphral blood mononuclear cell /gb=AK236820 /gi=115553815 /ug=Ssc.3302 /len=1184"	-	-	-	-
gnl|UG|Ssc#S58312653	33	9.5	8	2.29	35	10.52	"PREDICTED: Sus scrofa thrombospondin-4-like (LOC100513005), mRNA /cds=p(1,2886) /gb=XM_003123754 /gi=311249768 /ug=Ssc.77261 /len=3049"	GO:0005578//proteinaceous extracellular matrix;GO:0045202//synapse	GO:0005102//receptor binding;GO:0043236//laminin binding;GO:0046872//metal ion binding;GO:0005539//glycosaminoglycan binding	GO:0001934//positive regulation of protein phosphorylation;GO:0001525//angiogenesis;GO:0001935//endothelial cell proliferation;GO:0002690//positive regulation of leukocyte chemotaxis;GO:0090136//epithelial cell-cell adhesion;GO:0051259//protein oligomerization;GO:0048858//cell projection morphogenesis;GO:0014812//muscle cell migration	gi|311249769|ref|XP_003123802.1|/0/PREDICTED: thrombospondin-4-like [Sus scrofa]
gnl|UG|Ssc#S58314960	3	0.86	3	0.86	3	0.9	"PREDICTED: Sus scrofa zinc phosphodiesterase ELAC protein 1-like (LOC100524839), mRNA /cds=p(1,867) /gb=XM_003121444 /gi=311244540 /ug=Ssc.95559 /len=867"	GO:0043231//intracellular membrane-bounded organelle	"GO:0046914//transition metal ion binding;GO:0016891//endoribonuclease activity, producing 5'-phosphomonoesters"	GO:0042780//tRNA 3'-end processing	gi|311244541|ref|XP_003121492.1|/1.62785e-154/PREDICTED: zinc phosphodiesterase ELAC protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46875930	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa uncharacterized protein C20orf117-like (LOC100158112), mRNA /cds=p(1,4254) /gb=XM_001925168 /gi=311274822 /ug=Ssc.92801 /len=4254"	-	-	-	gi|311274823|ref|XP_001925203.2|/0/PREDICTED: uncharacterized protein C20orf117-like [Sus scrofa]
gnl|UG|Ssc#S55326278	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10149C02, expressed in ovary /gb=AK348373 /gi=288778548 /ug=Ssc.29609 /len=1746"	-	GO:0016741;GO:0046914//transition metal ion binding	-	gi|296486661|gb|DAA28774.1|/0/hCG19611-like [Bos taurus]
gnl|UG|Ssc#S58301488	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa zinc finger protein 282 (ZNF282), mRNA /cds=p(30,2039) /gb=XM_003134909 /gi=311275877 /ug=Ssc.73659 /len=2039"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|311275878|ref|XP_003134957.1|/0/PREDICTED: zinc finger protein 282-like [Sus scrofa]
gnl|UG|Ssc#S55323492	7	2.02	5	1.43	4	1.2	"Sus scrofa mRNA, clone:AMP010100D12, expressed in alveolar macrophages /gb=AK343989 /gi=288781380 /ug=Ssc.46 /len=3000"	GO:0044429//mitochondrial part	GO:0016866//intramolecular transferase activity;GO:0043169//cation binding;GO:0019842//vitamin binding	GO:0009062//fatty acid catabolic process;GO:0007275//multicellular organismal development	"gi|47523864|ref|NP_999570.1|/0/methylmalonyl-CoA mutase, mitochondrial precursor [Sus scrofa]"
gnl|UG|Ssc#S46876853	29	8.35	5	1.43	34	10.22	"PREDICTED: Sus scrofa BMS1 homolog, ribosome assembly protein (yeast) (BMS1), mRNA /cds=p(55,3903) /gb=XM_001928781 /gi=194042649 /ug=Ssc.19585 /len=4200"	GO:0031981//nuclear lumen	GO:0032555	GO:0042254//ribosome biogenesis	gi|194042650|ref|XP_001928816.1|/0/PREDICTED: ribosome biogenesis protein BMS1 homolog [Sus scrofa]
gnl|UG|Ssc#S46880657	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa ubiquitin specific peptidase 8 (USP8), mRNA /cds=p(187,3540) /gb=XM_001927730 /gi=311244744 /ug=Ssc.4237 /len=4256"	GO:0019898//extrinsic to membrane;GO:0005768//endosome;GO:0031090//organelle membrane	GO:0016790//thiolester hydrolase activity;GO:0004175//endopeptidase activity;GO:0019904//protein domain specific binding;GO:0019783//small conjugating protein-specific protease activity	GO:0006996//organelle organization;GO:0007264//small GTPase mediated signal transduction;GO:0019941//modification-dependent protein catabolic process;GO:0016579//protein deubiquitination	gi|194034734|ref|XP_001927765.1|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 [Sus scrofa]
gnl|UG|Ssc#S40976850	0	0	0	0	2	0.6	"Sus scrofa T-cadherin mRNA, complete cds /cds=p(1,2142) /gb=EU140561 /gi=157419782 /ug=Ssc.49717 /len=2142"	GO:0009986//cell surface;GO:0031224//intrinsic to membrane;GO:0042995//cell projection;GO:0044421//extracellular region part;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0050839//cell adhesion molecule binding;GO:0046872//metal ion binding;GO:0042562//hormone binding;GO:0042802//identical protein binding;GO:0071813//lipoprotein particle binding	GO:0001525//angiogenesis;GO:0007265//Ras protein signal transduction;GO:0010628//positive regulation of gene expression;GO:0001952//regulation of cell-matrix adhesion;GO:0051641//cellular localization;GO:0001935//endothelial cell proliferation;GO:0016337//cell-cell adhesion;GO:0007173//epidermal growth factor receptor signaling pathway;GO:0008284//positive regulation of cell proliferation;GO:0055095;GO:0009967//positive regulation of signal transduction;GO:0030031//cell projection assembly;GO:0006897//endocytosis;GO:0050921//positive regulation of chemotaxis;GO:0016049//cell growth;GO:0016477//cell migration;GO:0045216//cell-cell junction organization;GO:0007049//cell cycle	gi|158262677|ref|NP_001103415.1|/0/cadherin-13 [Sus scrofa]
gnl|UG|Ssc#S55318221	2	0.58	0	0	0	0	"Sus scrofa protein phosphatase 2, regulatory subunit B, alpha (PPP2R2A), mRNA /cds=p(298,1641) /gb=NM_001164020 /gi=255683518 /ug=Ssc.104 /len=2986"	GO:0008287//protein serine/threonine phosphatase complex	GO:0005488//binding;GO:0004721//phosphoprotein phosphatase activity;GO:0019888//protein phosphatase regulator activity	GO:0019222//regulation of metabolic process;GO:0014072;GO:0006464//protein modification process;GO:0023052//signaling	gi|281347194|gb|EFB22778.1|/0/hypothetical protein PANDA_002366 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55324345	8	2.3	2	0.57	2	0.6	"Sus scrofa mRNA, clone:ADR010082C08, expressed in adrenal gland /gb=AK343513 /gi=288780527 /ug=Ssc.44199 /len=1501"	-	-	-	gi|311249999|ref|XP_003123909.1|/1.37159e-161/PREDICTED: DTW domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S40049177	11	3.17	14	4	9	2.7	"rese36c_l17.y1 ese Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW144084 /gi=182595647 /ug=Ssc.67341 /len=535"	-	-	-	gi|300872546|gb|ADK39026.1|/1.87866e-20/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S55322315	0	0	4	1.14	2	0.6	"Sus scrofa mRNA, clone:DCI010076G09, expressed in dendritic cells (immature) /gb=AK344568 /gi=288782557 /ug=Ssc.27294 /len=1762"	GO:0031224//intrinsic to membrane	-	-	gi|77735559|ref|NP_001029475.1|/1.85373e-67/transmembrane protein 188 [Bos taurus]
gnl|UG|Ssc#S58304837	7	2.02	2	0.57	3	0.9	"PREDICTED: Sus scrofa prohibitin-like (LOC100524707), mRNA /cds=p(94,912) /gb=XM_003131560 /gi=311267515 /ug=Ssc.53848 /len=1830"	GO:0031981//nuclear lumen;GO:0005743//mitochondrial inner membrane;GO:0016021//integral to membrane;GO:0031312	GO:0030528//transcription regulator activity;GO:0043565//sequence-specific DNA binding;GO:0019899//enzyme binding	GO:0032583//regulation of gene-specific transcription;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0006476//protein deacetylation;GO:0033144//negative regulation of steroid hormone receptor signaling pathway;GO:0008283//cell proliferation;GO:0006259//DNA metabolic process;GO:0006915//apoptosis;GO:0009887//organ morphogenesis;GO:0009725//response to hormone stimulus;GO:0031958	gi|4505773|ref|NP_002625.1|/4.26005e-131/prohibitin [Homo sapiens]
gnl|UG|Ssc#S31112392	0	0	0	0	0	0	"1530019 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY416230 /gi=87217533 /ug=Ssc.33301 /len=701"	-	GO:0003676//nucleic acid binding	-	gi|297462686|ref|XP_001253844.3|/4.11146e-109/PREDICTED: BAH domain and coiled-coil containing 1 [Bos taurus]
gnl|UG|Ssc#S19537384	7	2.02	0	0	2	0.6	"940684 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN153556 /gi=46167986 /ug=Ssc.21082 /len=713"	-	-	-	-
gnl|UG|Ssc#S35168267	14	4.03	3	0.86	2	0.6	"Sus scrofa mRNA, clone:OVRM10152D01, expressed in ovary /gb=AK236101 /gi=115551423 /ug=Ssc.49935 /len=1551"	GO:0042598//vesicular fraction;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0015165//pyrimidine nucleotide sugar transmembrane transporter activity	GO:0015785//UDP-galactose transport	gi|311267520|ref|XP_003131610.1|/8.39502e-170/PREDICTED: LOW QUALITY PROTEIN: solute carrier family 35 member B1-like [Sus scrofa]
gnl|UG|Ssc#S35166501	29	8.35	23	6.57	20	6.01	"Sus scrofa mRNA, clone:LVRM10071D05, expressed in liver /gb=AK233035 /gi=115553237 /ug=Ssc.31953 /len=3120"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0043565//sequence-specific DNA binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0031641//regulation of myelination;GO:0010624	gi|193787591|dbj|BAG52797.1|/0/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S58306750	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa phosphoglucomutase 2-like 1 (PGM2L1), mRNA /cds=p(293,2161) /gb=XM_003129639 /gi=311263480 /ug=Ssc.64693 /len=2279"	GO:0044444//cytoplasmic part	"GO:0016301//kinase activity;GO:0016868//intramolecular transferase activity, phosphotransferases"	GO:0006006//glucose metabolic process;GO:0006796//phosphate metabolic process	"gi|311263481|ref|XP_003129687.1|/0/PREDICTED: glucose 1,6-bisphosphate synthase-like [Sus scrofa]"
gnl|UG|Ssc#S58310396	9	2.59	5	1.43	15	4.51	"PREDICTED: Sus scrofa small G protein signaling modulator 3-like (LOC100516266), mRNA /cds=p(154,2385) /gb=XM_003125999 /gi=311255027 /ug=Ssc.3031 /len=2812"	-	-	-	-
gnl|UG|Ssc#S58301238	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa transmembrane protein FAM155B-like (LOC100518049), mRNA /cds=p(1,1413) /gb=XM_003135158 /gi=311276437 /ug=Ssc.42421 /len=1413"	GO:0016020//membrane	-	-	gi|311276438|ref|XP_003135206.1|/0/PREDICTED: transmembrane protein FAM155B-like [Sus scrofa]
gnl|UG|Ssc#S55321324	0	0	7	2	2	0.6	"Sus scrofa mRNA, clone:ITT010072D02, expressed in small intestine /gb=AK345163 /gi=288783548 /ug=Ssc.38808 /len=1843"	-	-	-	-
gnl|UG|Ssc#S58302388	3	0.86	2	0.57	0	0	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase TRIM23-like (LOC100513958), mRNA /cds=p(1,1980) /gb=XM_003134013 /gi=311273824 /ug=Ssc.79904 /len=1980"	-	-	-	gi|311273825|ref|XP_003134061.1|/0/PREDICTED: e3 ubiquitin-protein ligase TRIM23-like [Sus scrofa]
gnl|UG|Ssc#S58314015	5	1.44	0	0	3	0.9	"PREDICTED: Sus scrofa tetraspanin-4-like (LOC100513456), mRNA /cds=p(153,1265) /gb=XM_003122396 /gi=311246995 /ug=Ssc.61625 /len=1265"	GO:0016021//integral to membrane	GO:0005488//binding	GO:0065003	gi|311246996|ref|XP_003122444.1|/1.85284e-177/PREDICTED: tetraspanin-4-like [Sus scrofa]
gnl|UG|Ssc#S35171565	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:ITT010079A12, expressed in intestine /gb=AK231484 /gi=115548270 /ug=Ssc.73089 /len=532"	GO:0031981//nuclear lumen;GO:0000785//chromatin	GO:0003676//nucleic acid binding	GO:0022403;GO:0007599//hemostasis;GO:0050794//regulation of cellular process;GO:0034728	"gi|74004208|ref|XP_545397.2|/2.33824e-71/PREDICTED: similar to histone 1, H2ai (predicted) [Canis familiaris]"
gnl|UG|Ssc#S35166995	9	2.59	3	0.86	4	1.2	"Sus scrofa mRNA, clone:LVRM10054G03, expressed in liver /gb=AK232949 /gi=115552744 /ug=Ssc.19347 /len=1534"	-	GO:0048037//cofactor binding;GO:0016836//hydro-lyase activity	GO:0008152//metabolic process	"gi|73989418|ref|XP_542640.2|/0/PREDICTED: similar to dTDP-D-glucose 4,6-dehydratase [Canis familiaris]"
gnl|UG|Ssc#S20457910	24	6.91	0	0	2	0.6	"UMC-pgvo2-007-g12 Germinal-Vesicle-Oocyte pgvo Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN031851 /gi=48726387 /ug=Ssc.94864 /len=271"	GO:0000785//chromatin;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0034728	gi|194039746|ref|XP_001925399.1|/1.59772e-25/PREDICTED: histone H2A type 1-A-like [Sus scrofa]
gnl|UG|Ssc#S58301743	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa WD repeat-containing protein 91-like (LOC100524054), mRNA /cds=p(1,2241) /gb=XM_003134652 /gi=311275358 /ug=Ssc.25330 /len=2614"	-	-	-	gi|311275359|ref|XP_003134700.1|/0/PREDICTED: WD repeat-containing protein 91-like [Sus scrofa]
gnl|UG|Ssc#S35174006	61	17.56	42	12.01	65	19.53	"Sus scrofa mRNA, clone:OVR010034F02, expressed in ovary /gb=AK234262 /gi=115545829 /ug=Ssc.8541 /len=2108"	GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0000377	gi|157074074|ref|NP_001096748.1|/0/splicing factor 4 [Bos taurus]
gnl|UG|Ssc#S22287589	3	0.86	9	2.57	5	1.5	"CJ030319 full-length enriched swine cDNA library, adult testis Sus scrofa cDNA clone TES01D020005 5', mRNA sequence /clone=TES01D020005 /clone_end=5' /gb=CJ030319 /gi=54544336 /ug=Ssc.55910 /len=882"	GO:0005764//lysosome;GO:0031090//organelle membrane	-	GO:0048468//cell development	gi|300794759|ref|NP_001178134.1|/1.89657e-57/heme transporter HRG1 [Bos taurus]
gnl|UG|Ssc#S55323589	0	0	0	0	0	0	"Sus scrofa mRNA, clone:AMP010075F12, expressed in alveolar macrophages /gb=AK343892 /gi=288781283 /ug=Ssc.76740 /len=1899"	-	-	-	-
gnl|UG|Ssc#S58303667	9	2.59	2	0.57	10	3.01	"PREDICTED: Sus scrofa charged multivesicular body protein 2b-like (LOC100516044), mRNA /cds=p(249,890) /gb=XM_003132730 /gi=311270127 /ug=Ssc.24996 /len=1808"	GO:0005770//late endosome	GO:0005515//protein binding	GO:0016192//vesicle-mediated transport	gi|74001062|ref|XP_544799.2|/7.8103e-94/PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]
gnl|UG|Ssc#S20937465	11	3.17	3	0.86	10	3.01	"AJ649188 CSEQRAN19 Sus scrofa cDNA clone C0003271_M20, mRNA sequence /clone=C0003271_M20 /gb=AJ649188 /gi=49326033 /ug=Ssc.85595 /len=546"	GO:0043234//protein complex;GO:0016604//nuclear body	GO:0005515//protein binding;GO:0043566//structure-specific DNA binding	GO:0007050//cell cycle arrest;GO:0006289//nucleotide-excision repair;GO:0045003//double-strand break repair via synthesis-dependent strand annealing;GO:0000723//telomere maintenance;GO:0006261//DNA-dependent DNA replication;GO:0051320	gi|1403534|emb|CAA67116.1|/3.99045e-77/p32-subunit of replication protein A [Rattus norvegicus]
gnl|UG|Ssc#S18555433	4	1.15	3	0.86	9	2.7	"BX924084 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0017.j.22 5prim, mRNA sequence /clone=scan0017.j.22 /clone_end=5' /gb=BX924084 /gi=90230349 /ug=Ssc.54346 /len=857"	-	-	-	gi|301755202|ref|XP_002913434.1|/3.10044e-115/PREDICTED: kelch-like protein 36-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58304124	0	0	0	0	0	0	"PREDICTED: Sus scrofa abhydrolase domain containing 6 (ABHD6), mRNA /cds=p(33,1046) /gb=XM_003132273 /gi=311269054 /ug=Ssc.56281 /len=2242"	GO:0031224//intrinsic to membrane	GO:0004091//carboxylesterase activity	-	gi|311269055|ref|XP_003132321.1|/0/PREDICTED: monoacylglycerol lipase ABHD6-like [Sus scrofa]
gnl|UG|Ssc#S58303965	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa angiomotin like 2 (AMOTL2), mRNA /cds=p(102,2339) /gb=XM_003132432 /gi=311269417 /ug=Ssc.49046 /len=2656"	GO:0043296//apical junction complex	GO:0005515//protein binding	-	gi|311269418|ref|XP_003132480.1|/0/PREDICTED: angiomotin-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35174056	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:OVR010028A02, expressed in ovary /gb=AK234212 /gi=115545779 /ug=Ssc.31896 /len=2427"	GO:0044459//plasma membrane part;GO:0044430//cytoskeletal part;GO:0015630//microtubule cytoskeleton	GO:0032561;GO:0017111//nucleoside-triphosphatase activity	GO:0016192//vesicle-mediated transport	gi|301772000|ref|XP_002921412.1|/1.97387e-17/PREDICTED: dynamin-2-like isoform 5 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58312921	15	4.32	17	4.86	10	3.01	"PREDICTED: Sus scrofa mediator of RNA polymerase II transcription subunit 26-like (LOC100512587), mRNA /cds=p(241,2040) /gb=XM_003123475 /gi=311249220 /ug=Ssc.6005 /len=3135"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0016251//general RNA polymerase II transcription factor activity	"GO:0006355//regulation of transcription, DNA-dependent;GO:0006352//transcription initiation, DNA-dependent"	gi|311249221|ref|XP_003123523.1|/0/PREDICTED: mediator of RNA polymerase II transcription subunit 26-like [Sus scrofa]
gnl|UG|Ssc#S46876919	13	3.74	4	1.14	12	3.61	"PREDICTED: Sus scrofa protein FRA10AC1-like, transcript variant 2 (LOC100157308), mRNA /cds=p(253,1188) /gb=XM_001928592 /gi=311271648 /ug=Ssc.832 /len=1328"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|194042510|ref|XP_001928627.1|/1.0931e-167/PREDICTED: protein FRA10AC1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35170650	26	7.49	7	2	38	11.42	"Sus scrofa mRNA, clone:LNG010034F04, expressed in lung /gb=AK231865 /gi=115549189 /ug=Ssc.94261 /len=1156"	GO:0030054//cell junction;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0035556//intracellular signal transduction;GO:0009207;GO:0030010//establishment of cell polarity;GO:0030073//insulin secretion;GO:0015980//energy derivation by oxidation of organic compounds;GO:0007599//hemostasis;GO:0002009//morphogenesis of an epithelium	"gi|63100782|gb|AAH95467.1|/3.99118e-91/RAP1B, member of RAS oncogene family [Homo sapiens]"
gnl|UG|Ssc#S46877873	0	0	0	0	0	0	"PREDICTED: Sus scrofa furry homolog (Drosophila) (FRY), partial mRNA /cds=p(1,2883) /gb=XM_001928063 /gi=311266104 /ug=Ssc.41105 /len=2883"	GO:0031224//intrinsic to membrane	-	-	"gi|311266105|ref|XP_001928098.2|/0/PREDICTED: protein furry homolog, partial [Sus scrofa]"
gnl|UG|Ssc#S58310340	10	2.88	12	3.43	4	1.2	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 3 subunit D-like (LOC100512835), mRNA /cds=p(490,2136) /gb=XM_003126044 /gi=311255158 /ug=Ssc.6735 /len=2432"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006413//translational initiation	gi|311255159|ref|XP_003126092.1|/0/PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Sus scrofa]
gnl|UG|Ssc#S5991147	0	0	0	0	3	0.9	"119100 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=AW786193 /gi=7842969 /ti=447570939 /ug=Ssc.78594 /len=511"	-	GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0032559	GO:0006915//apoptosis;GO:0009267//cellular response to starvation;GO:0006796//phosphate metabolic process;GO:0007010//cytoskeleton organization;GO:0006464//protein modification process	"gi|194210225|ref|XP_001489376.2|/1.64411e-87/PREDICTED: NUAK family, SNF1-like kinase, 2 [Equus caballus]"
gnl|UG|Ssc#S35174065	13	3.74	9	2.57	12	3.61	"Sus scrofa mRNA, clone:OVR010026H11, expressed in ovary /gb=AK234203 /gi=115545770 /ug=Ssc.2699 /len=1433"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044425//membrane part	GO:0000030//mannosyltransferase activity	GO:0006487//protein N-linked glycosylation	gi|57109914|ref|XP_535823.1|/0/PREDICTED: similar to Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase (Dol-P-Man dependent alpha(1-3)-mannosyltransferase) (Not56-like protein) isoform 1 [Canis familiaris]
gnl|UG|Ssc#S20938041	0	0	2	0.57	30	9.02	"AJ649764 CSEQRAN19 Sus scrofa cDNA clone C0003273_G16, mRNA sequence /clone=C0003273_G16 /gb=AJ649764 /gi=49326609 /ug=Ssc.85623 /len=462"	GO:0044425//membrane part	GO:0005488//binding	GO:0019882//antigen processing and presentation	gi|1000514|emb|CAA57986.1|/6.92524e-32/major histocompatibility complex class I [Rattus norvegicus]
gnl|UG|Ssc#S55326465	167	48.08	90	25.73	119	35.76	"Sus scrofa mRNA, clone:OVRM10089F08, expressed in ovary /gb=AK348186 /gi=288778361 /ug=Ssc.11346 /len=1959"	GO:0044452;GO:0043234//protein complex	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation	gi|47678403|emb|CAG30322.1|/0/dJ1014D13.1 [Homo sapiens]
gnl|UG|Ssc#S55324949	56	16.12	64	18.29	37	11.12	"Sus scrofa mRNA, clone:SKNB10017A12, expressed in skin /gb=AK349658 /gi=288779923 /ug=Ssc.30298 /len=1278"	-	-	-	-
gnl|UG|Ssc#S35172630	0	0	4	1.14	0	0	"Sus scrofa mRNA, clone:OVR010090A08, expressed in ovary /gb=AK234578 /gi=115547205 /ug=Ssc.19917 /len=1751"	-	-	GO:0009987//cellular process	gi|311244606|ref|XP_001927187.2|/4.02009e-14/PREDICTED: hypothetical protein LOC100156836 [Sus scrofa]
gnl|UG|Ssc#S58307392	6	1.73	7	2	8	2.4	"PREDICTED: Sus scrofa electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like (LOC100515785), mRNA /cds=p(238,2091) /gb=XM_003129003 /gi=311262176 /ug=Ssc.6919 /len=2432"	GO:0031304//intrinsic to mitochondrial inner membrane;GO:0005759//mitochondrial matrix	"GO:0048038//quinone binding;GO:0043169//cation binding;GO:0051536//iron-sulfur cluster binding;GO:0016722//oxidoreductase activity, oxidizing metal ions;GO:0016649//oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor;GO:0050662//coenzyme binding"	GO:0022900//electron transport chain;GO:0006635//fatty acid beta-oxidation;GO:0051234//establishment of localization;GO:0006950//response to stress	"gi|311262177|ref|XP_003129051.1|/0/PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S20938951	93	26.78	12	3.43	69	20.74	"AJ650674 CSEQRAN19 Sus scrofa cDNA clone C0003276_A02, mRNA sequence /clone=C0003276_A02 /gb=AJ650674 /gi=49327519 /ug=Ssc.74157 /len=547"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0000502//proteasome complex	GO:0004175//endopeptidase activity;GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0002437//inflammatory response to antigenic stimulus;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0051704"	"gi|149030731|gb|EDL85768.1|/3.29579e-103/proteasome (prosome, macropain) subunit, beta type 4 [Rattus norvegicus]"
gnl|UG|Ssc#S58311590	0	0	8	2.29	0	0	"PREDICTED: Sus scrofa transmembrane protein 87B (TMEM87B), mRNA /cds=p(16,1680) /gb=XM_003124811 /gi=311251957 /ug=Ssc.53266 /len=1680"	GO:0031224//intrinsic to membrane	-	-	gi|311251958|ref|XP_003124859.1|/0/PREDICTED: transmembrane protein 87B-like [Sus scrofa]
gnl|UG|Ssc#S46879522	4	1.15	5	1.43	2	0.6	"PREDICTED: Sus scrofa transcription factor E2F5-like (LOC100157957), mRNA /cds=p(1,1035) /gb=XM_001924905 /gi=311253669 /ug=Ssc.5914 /len=1683"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0012505//endomembrane system;GO:0005737//cytoplasm	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding;GO:0015075//ion transmembrane transporter activity	"GO:0051318//G1 phase;GO:0006351//transcription, DNA-dependent;GO:0009653//anatomical structure morphogenesis"	gi|311253670|ref|XP_001924940.2|/2.3125e-136/PREDICTED: transcription factor E2F5-like [Sus scrofa]
gnl|UG|Ssc#S47005759	15	4.32	2	0.57	16	4.81	"Sus scrofa ubiquitin-specific peptidase 7 (USP7) mRNA, complete cds /cds=p(85,3396) /gb=FJ167680 /gi=205363466 /ug=Ssc.11144 /len=4216"	GO:0016604//nuclear body	GO:0016790//thiolester hydrolase activity;GO:0004175//endopeptidase activity;GO:0042802//identical protein binding;GO:0019899//enzyme binding;GO:0019783//small conjugating protein-specific protease activity	"GO:0012502//induction of programmed cell death;GO:0010608//posttranscriptional regulation of gene expression;GO:0051704;GO:0006355//regulation of transcription, DNA-dependent;GO:0019941//modification-dependent protein catabolic process;GO:0032501//multicellular organismal process;GO:0070646"	gi|208610190|ref|NP_001129152.1|/0/ubiquitin carboxyl-terminal hydrolase 7 [Sus scrofa]
gnl|UG|Ssc#S58304248	11	3.17	2	0.57	0	0	"PREDICTED: Sus scrofa palmitoyltransferase ZDHHC3-like (LOC100511658), mRNA /cds=p(253,1152) /gb=XM_003132149 /gi=311268760 /ug=Ssc.5353 /len=2646"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0008415//acyltransferase activity;GO:0046914//transition metal ion binding	GO:0006497//protein lipidation;GO:0006886//intracellular protein transport	"gi|57101288|ref|XP_533859.1|/4.99214e-171/PREDICTED: similar to zinc finger, DHHC domain containing 3 isoform 1 [Canis familiaris]"
gnl|UG|Ssc#S58311550	72	20.73	205	58.6	67	20.14	"PREDICTED: Sus scrofa LIM and senescent cell antigen-like-containing domain protein 1-like, transcript variant 1 (LOC100511559), mRNA /cds=p(162,1322) /gb=XM_003124850 /gi=311252037 /ug=Ssc.24149 /len=3390"	GO:0005924//cell-substrate adherens junction;GO:0044444//cytoplasmic part;GO:0032991//macromolecular complex	GO:0043169//cation binding	GO:0009792//embryo development ending in birth or egg hatching;GO:0031589//cell-substrate adhesion;GO:0051259//protein oligomerization	gi|311252038|ref|XP_003124898.1|/0/PREDICTED: LIM and senescent cell antigen-like-containing domain protein 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S40555542	8	2.3	4	1.14	12	3.61	"rthg31_m9.y1 thg Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW642255 /gi=183129159 /ug=Ssc.29825 /len=638"	-	-	-	-
gnl|UG|Ssc#S58304916	0	0	0	0	0	0	"PREDICTED: Sus scrofa cell division cycle 6 homolog (S. cerevisiae) (CDC6), mRNA /cds=p(170,1852) /gb=XM_003131471 /gi=311267355 /ug=Ssc.11879 /len=2065"	GO:0031981//nuclear lumen;GO:0005819//spindle;GO:0044444//cytoplasmic part	GO:0016462//pyrophosphatase activity;GO:0032559;GO:0019899//enzyme binding	GO:0000080//G1 phase of mitotic cell cycle;GO:0032467//positive regulation of cytokinesis;GO:0008283//cell proliferation;GO:0051320;GO:0007050//cell cycle arrest;GO:0007165//signal transduction;GO:0000082//G1/S transition of mitotic cell cycle;GO:0000090//mitotic anaphase;GO:0006260//DNA replication	gi|311267356|ref|XP_003131519.1|/0/PREDICTED: cell division control protein 6 homolog [Sus scrofa]
gnl|UG|Ssc#S58314947	21	6.05	2	0.57	11	3.31	"PREDICTED: Sus scrofa methionyl-tRNA formyltransferase, mitochondrial-like (LOC100513511), mRNA /cds=p(20,1192) /gb=XM_003121456 /gi=311244573 /ug=Ssc.52134 /len=1535"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016742//hydroxymethyl-, formyl- and related transferase activity"	GO:0019988//charged-tRNA amino acid modification;GO:0006412//translation	"gi|311244574|ref|XP_003121504.1|/0/PREDICTED: methionyl-tRNA formyltransferase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S18554577	0	0	2	0.57	0	0	"BX923228 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0024.n.18 5prim, mRNA sequence /clone=scan0024.n.18 /clone_end=5' /gb=BX923228 /gi=90242526 /ug=Ssc.62473 /len=683"	GO:0044451//nucleoplasm part	GO:0016564//transcription repressor activity	GO:0008283//cell proliferation;GO:0051259//protein oligomerization	gi|300798379|ref|NP_001179578.1|/2.90656e-72/nucleus accumbens-associated protein 2 [Bos taurus]
gnl|UG|Ssc#S58308764	2	0.58	2	0.57	14	4.21	"PREDICTED: Sus scrofa ephrin type-A receptor 2-like (LOC100522873), mRNA /cds=p(1,3312) /gb=XM_003127639 /gi=311258576 /ug=Ssc.44310 /len=3312"	GO:0016021//integral to membrane;GO:0031252//cell leading edge	GO:0032559;GO:0004714//transmembrane receptor protein tyrosine kinase activity	GO:0010594//regulation of endothelial cell migration;GO:0032855//positive regulation of Rac GTPase activity;GO:0048562//embryonic organ morphogenesis;GO:0012501//programmed cell death;GO:0001944//vasculature development;GO:0022603//regulation of anatomical structure morphogenesis;GO:0048468//cell development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0048522;GO:0006935//chemotaxis;GO:0006464//protein modification process;GO:0007399//nervous system development;GO:0001707//mesoderm formation	gi|311258577|ref|XP_003127687.1|/0/PREDICTED: ephrin type-A receptor 2-like [Sus scrofa]
gnl|UG|Ssc#S19547009	3	0.86	0	0	8	2.4	"952683 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN163205 /gi=46177635 /ug=Ssc.54507 /len=855"	GO:0043231//intracellular membrane-bounded organelle	GO:0016802	GO:0044237//cellular metabolic process	gi|301767712|ref|XP_002919261.1|/1.90143e-107/PREDICTED: putative adenosylhomocysteinase 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58301184	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa bromodomain and WD repeat-containing protein 3-like (LOC100520060), mRNA /cds=p(1,5400) /gb=XM_003135212 /gi=311276566 /ug=Ssc.36241 /len=5424"	-	-	-	gi|311276567|ref|XP_003135260.1|/0/PREDICTED: LOW QUALITY PROTEIN: bromodomain and WD repeat-containing protein 3-like [Sus scrofa]
gnl|UG|Ssc#S46878298	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa Fanconi anemia, complementation group I, transcript variant 1 (FANCI), mRNA /cds=p(1,3981) /gb=XM_001926870 /gi=194039638 /ug=Ssc.11164 /len=4615"	GO:0031981//nuclear lumen	GO:0005488//binding	GO:0006259//DNA metabolic process	gi|194039639|ref|XP_001926905.1|/0/PREDICTED: Fanconi anemia group I protein isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58301283	238	68.52	101	28.87	193	58	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase HUWE1-like (LOC100517442), mRNA /cds=p(522,13643) /gb=XM_003135102 /gi=311276337 /ug=Ssc.1822 /len=14176"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0019787//small conjugating protein ligase activity	GO:0048869;GO:0006281//DNA repair;GO:0016567//protein ubiquitination	gi|311276338|ref|XP_003135150.1|/0/PREDICTED: e3 ubiquitin-protein ligase HUWE1-like [Sus scrofa]
gnl|UG|Ssc#S18331339	979	281.86	3498	999.9	1712	514.5	"BP458405 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRM10174D12 5', mRNA sequence /clone=OVRM10174D12 /clone_end=5' /gb=BP458405 /gi=40472447 /ug=Ssc.23719 /len=353"	GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	"gi|301787185|ref|XP_002929014.1|/8.65907e-35/PREDICTED: 60S ribosomal protein L38-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58303473	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa ankyrin repeat domain 13A (ANKRD13A), mRNA /cds=p(251,1330) /gb=XM_003132931 /gi=311270766 /ug=Ssc.26213 /len=1330"	-	-	-	gi|311270767|ref|XP_003132979.1|/0/PREDICTED: ankyrin repeat domain-containing protein 13A-like [Sus scrofa]
gnl|UG|Ssc#S58313225	0	0	0	0	0	0	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase MARCH2-like (LOC100513975), mRNA /cds=p(156,896) /gb=XM_003123164 /gi=311248603 /ug=Ssc.2476 /len=1557"	GO:0031224//intrinsic to membrane;GO:0005764//lysosome;GO:0031982//vesicle;GO:0031090//organelle membrane	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0016192//vesicle-mediated transport;GO:0032446//protein modification by small protein conjugation	gi|311248604|ref|XP_003123212.1|/3.22077e-145/PREDICTED: e3 ubiquitin-protein ligase MARCH2-like [Sus scrofa]
gnl|UG|Ssc#S26645611	0	0	0	0	2	0.6	"BW984202 full-length enriched swine cDNA library, adult intestine Sus scrofa cDNA clone ITT010092G03 5', mRNA sequence /clone=ITT010092G03 /clone_end=5' /gb=BW984202 /gi=74253514 /ug=Ssc.79812 /len=806"	-	-	-	-
gnl|UG|Ssc#S55291837	0	0	0	0	2	0.6	"FS653018 full-length enriched swine cDNA library, adult back fat Sus scrofa cDNA clone BKFL10075B07 5', mRNA sequence /clone=BKFL10075B07 /clone_end=5' /gb=FS653018 /gi=288291523 /ug=Ssc.34021 /len=684"	-	-	-	gi|301754894|ref|XP_002913308.1|/1.98152e-12/PREDICTED: protein CASC5-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58309494	28	8.06	40	11.43	16	4.81	"PREDICTED: Sus scrofa zinc finger homeobox 3 (ZFHX3), mRNA /cds=p(1,8202) /gb=XM_003126916 /gi=311257093 /ug=Ssc.8422 /len=9639"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0046872//metal ion binding;GO:0043565//sequence-specific DNA binding	GO:0045661//regulation of myoblast differentiation;GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|311257094|ref|XP_003126964.1|/0/PREDICTED: zinc finger homeobox protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58303932	8	2.3	0	0	11	3.31	"PREDICTED: Sus scrofa procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 (PLOD2), mRNA /cds=p(1,1992) /gb=XM_003132466 /gi=311269497 /ug=Ssc.24126 /len=3267"	GO:0005789//endoplasmic reticulum membrane	"GO:0070815//peptidyl-lysine 5-dioxygenase activity;GO:0046914//transition metal ion binding;GO:0019842//vitamin binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	GO:0009725//response to hormone stimulus;GO:0043412;GO:0006950//response to stress	"gi|311269498|ref|XP_003132514.1|/0/PREDICTED: LOW QUALITY PROTEIN: procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Sus scrofa]"
gnl|UG|Ssc#S35165299	3	0.86	0	0	2	0.6	"Sus scrofa mRNA, clone:LVRM10148B11, expressed in liver /gb=AK233437 /gi=115554427 /ug=Ssc.4063 /len=1879"	-	-	-	-
gnl|UG|Ssc#S20937628	251	72.26	636	181.8	151	45.38	"AJ649351 CSEQRAN19 Sus scrofa cDNA clone C0003272_E01, mRNA sequence /clone=C0003272_E01 /gb=AJ649351 /gi=49326196 /ug=Ssc.85586 /len=490"	GO:0000323//lytic vacuole;GO:0009986//cell surface;GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0042995//cell projection;GO:0043025//neuronal cell body;GO:0000267//cell fraction	GO:0004175//endopeptidase activity;GO:0008238//exopeptidase activity;GO:0005515//protein binding	GO:0012501//programmed cell death;GO:0031669//cellular response to nutrient levels;GO:0009746;GO:0019538//protein metabolic process;GO:0007399//nervous system development;GO:0048232//male gamete generation;GO:0031960//response to corticosteroid stimulus;GO:0048754//branching morphogenesis of a tube;GO:0008406//gonad development	gi|6978723|ref|NP_037288.1|/1.06059e-34/cathepsin L1 preproprotein [Rattus norvegicus]
gnl|UG|Ssc#S58305794	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa importin-9-like (LOC100524758), mRNA /cds=p(1,5229) /gb=XM_003130605 /gi=311265432 /ug=Ssc.2133 /len=6080"	GO:0043231//intracellular membrane-bounded organelle	GO:0017016//Ras GTPase binding;GO:0022892	GO:0006605//protein targeting	gi|311265433|ref|XP_003130653.1|/0/PREDICTED: importin-9-like [Sus scrofa]
gnl|UG|Ssc#S33333593	256	73.7	200	57.17	310	93.16	"Sus scrofa splicing factor, arginine/serine-rich 11 (SFRS11) mRNA, complete cds /cds=p(115,1566) /gb=DQ499456 /gi=104295152 /ug=Ssc.54073 /len=2787"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	"gi|301780904|ref|XP_002925870.1|/8.45914e-84/PREDICTED: hypothetical protein LOC100484460, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58314546	2	0.58	0	0	5	1.5	"PREDICTED: Sus scrofa apoptosis-enhancing nuclease-like (LOC100522657), mRNA /cds=p(124,1101) /gb=XM_003121858 /gi=311245638 /ug=Ssc.43796 /len=2754"	GO:0031981//nuclear lumen	GO:0005488//binding;GO:0004518//nuclease activity	"GO:0009314//response to radiation;GO:0008630//DNA damage response, signal transduction resulting in induction of apoptosis"	gi|311245639|ref|XP_003121906.1|/6.15055e-172/PREDICTED: apoptosis-enhancing nuclease-like [Sus scrofa]
gnl|UG|Ssc#S46878257	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa MRS2 magnesium homeostasis factor homolog (S. cerevisiae) (MRS2), mRNA /cds=p(117,1421) /gb=XM_001928036 /gi=311259799 /ug=Ssc.81436 /len=3873"	GO:0019866//organelle inner membrane;GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0006810//transport	"gi|194039724|ref|XP_001928071.1|/0/PREDICTED: magnesium transporter MRS2 homolog, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35170568	12	3.45	16	4.57	12	3.61	"Sus scrofa mRNA, clone:OVRM10056F02, expressed in ovary /gb=AK235191 /gi=115549271 /ug=Ssc.35552 /len=1905"	GO:0043231//intracellular membrane-bounded organelle	GO:0004753//saccharopine dehydrogenase activity	GO:0008152//metabolic process	gi|311265334|ref|XP_003130604.1|/0/PREDICTED: LOW QUALITY PROTEIN: probable saccharopine dehydrogenase-like [Sus scrofa]
gnl|UG|Ssc#S20940964	2	0.58	4	1.14	5	1.5	"AJ652687 KN277 Sus scrofa cDNA clone C0005181_I24, mRNA sequence /clone=C0005181_I24 /gb=AJ652687 /gi=49335133 /ug=Ssc.85722 /len=446"	-	-	-	-
gnl|UG|Ssc#S23763107	4	1.15	2	0.57	5	1.5	"1120767 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN120726 /gi=59815005 /ug=Ssc.63340 /len=859"	GO:0035097//histone methyltransferase complex;GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0018024//histone-lysine N-methyltransferase activity;GO:0003712//transcription cofactor activity	"GO:0002274;GO:0032526//response to retinoic acid;GO:0006355//regulation of transcription, DNA-dependent;GO:0002763//positive regulation of myeloid leukocyte differentiation;GO:0006305;GO:0002444;GO:0022402//cell cycle process;GO:0030522//intracellular receptor mediated signaling pathway;GO:0034968//histone lysine methylation"	gi|73981802|ref|XP_533102.2|/3.52796e-69/PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia 5 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S46877154	34	9.79	7	2	27	8.11	"PREDICTED: Sus scrofa soc-2 suppressor of clear homolog (C. elegans) (SHOC2), mRNA /cds=p(290,2038) /gb=XM_001927493 /gi=194042022 /ug=Ssc.83770 /len=4483"	-	-	-	-
gnl|UG|Ssc#S35169042	41	11.8	2	0.57	9	2.7	"Sus scrofa mRNA, clone:OVRM10121D08, expressed in ovary /gb=AK235870 /gi=115550795 /ug=Ssc.18628 /len=1749"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0016709//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;GO:0046914//transition metal ion binding"	GO:0006694//steroid biosynthetic process;GO:0008203//cholesterol metabolic process;GO:0006631//fatty acid metabolic process	gi|262263193|dbj|BAI48099.1|/4.69188e-164/sterol-C4-methyl oxidase-like [Sus scrofa]
gnl|UG|Ssc#S58313077	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa f-box/WD repeat-containing protein 9-like (LOC100519242), mRNA /cds=p(1,1377) /gb=XM_003123317 /gi=311248904 /ug=Ssc.18492 /len=1684"	-	-	-	gi|311248905|ref|XP_003123365.1|/0/PREDICTED: f-box/WD repeat-containing protein 9-like [Sus scrofa]
gnl|UG|Ssc#S55322530	11	3.17	19	5.43	12	3.61	"Sus scrofa mRNA, clone:TCH010036H06, expressed in trachea /gb=AK350814 /gi=288782342 /ug=Ssc.76557 /len=2714"	GO:0044464//cell part	GO:0004197//cysteine-type endopeptidase activity	GO:0019538//protein metabolic process	gi|194220842|ref|XP_001500441.2|/0/PREDICTED: similar to calpain 13 [Equus caballus]
gnl|UG|Ssc#S58303571	0	0	8	2.29	6	1.8	"PREDICTED: Sus scrofa hypothetical protein LOC100525487 (LOC100525487), mRNA /cds=p(414,692) /gb=XM_003132822 /gi=311270408 /ug=Ssc.38576 /len=1476"	-	-	-	gi|311270409|ref|XP_003132870.1|/5.68752e-27/PREDICTED: hypothetical protein LOC100525487 [Sus scrofa]
gnl|UG|Ssc#S46879931	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa GA binding protein transcription factor, alpha subunit pseudogene, transcript variant 1 (GABPAP), mRNA /cds=p(377,1720) /gb=XM_001929663 /gi=311254345 /ug=Ssc.37080 /len=2379"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0043565//sequence-specific DNA binding;GO:0046983//protein dimerization activity	GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|311254346|ref|XP_001929698.2|/0/PREDICTED: GA-binding protein subunit beta-2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S40435713	20	5.76	9	2.57	57	17.13	"rret34_o9.y1 ret Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW530319 /gi=183058860 /ug=Ssc.22477 /len=711"	-	-	-	-
gnl|UG|Ssc#S58313226	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa ras-related protein Rab-11B-like (LOC100513782), mRNA /cds=p(738,1394) /gb=XM_003123163 /gi=311248601 /ug=Ssc.5570 /len=2298"	GO:0043231//intracellular membrane-bounded organelle;GO:0031410//cytoplasmic vesicle;GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0006810//transport;GO:0035556//intracellular signal transduction;GO:0009207	gi|114675154|ref|XP_001147785.1|/3.83485e-164/PREDICTED: similar to GTP-binding protein RAB11B [Pan troglodytes]
gnl|UG|Ssc#S6058631	8	2.3	6	1.72	9	2.7	"MI-P-O3-aav-d-03-1-UM.s1 MI-P-O3 Sus scrofa cDNA clone MI-P-O3-aav-d-03-1-UM 3', mRNA sequence /clone=MI-P-O3-aav-d-03-1-UM /clone_end=3' /gb=BF703376 /gi=11988784 /ug=Ssc.6053 /len=622"	-	-	-	-
gnl|UG|Ssc#S20939064	84	24.18	13	3.72	80	24.04	"AJ650787 CSEQRAN19 Sus scrofa cDNA clone C0003276_F11, mRNA sequence /clone=C0003276_F11 /gb=AJ650787 /gi=49327632 /ug=Ssc.85666 /len=460"	GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0031981//nuclear lumen;GO:0015630//microtubule cytoskeleton	GO:0005515//protein binding;GO:0032559	GO:0044267//cellular protein metabolic process;GO:0051707//response to other organism	gi|37359776|dbj|BAC97866.1|/8.105e-65/mKIAA0098 protein [Mus musculus]
gnl|UG|Ssc#S58312156	123	35.41	63	18.01	98	29.45	"PREDICTED: Sus scrofa Golgi to ER traffic protein 4 homolog (LOC100520727), mRNA /cds=p(1,822) /gb=XM_003124243 /gi=311250787 /ug=Ssc.83170 /len=1473"	GO:0072379	GO:0005488//binding	GO:0051234//establishment of localization;GO:0045048//protein insertion into ER membrane	gi|311250788|ref|XP_003124291.1|/3.95489e-129/PREDICTED: Golgi to ER traffic protein 4 homolog [Sus scrofa]
gnl|UG|Ssc#S58305035	82	23.61	192	54.88	118	35.46	"PREDICTED: Sus scrofa histone deacetylase 5-like (LOC100515165), mRNA /cds=p(1,2028) /gb=XM_003131369 /gi=311267112 /ug=Ssc.4125 /len=2109"	GO:0016585//chromatin remodeling complex	GO:0019901//protein kinase binding;GO:0043565//sequence-specific DNA binding;GO:0017136//NAD-dependent histone deacetylase activity;GO:0008134//transcription factor binding;GO:0016564//transcription repressor activity	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0006476//protein deacetylation;GO:0016458//gene silencing;GO:0032868//response to insulin stimulus;GO:0010830;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0030098//lymphocyte differentiation;GO:0043388//positive regulation of DNA binding;GO:0006952//defense response;GO:0016568//chromatin modification;GO:0002042//cell migration involved in sprouting angiogenesis	gi|311267113|ref|XP_003131417.1|/0/PREDICTED: histone deacetylase 5-like [Sus scrofa]
gnl|UG|Ssc#S35169081	46	13.24	33	9.43	56	16.83	"Sus scrofa mRNA, clone:OVRM10119B05, expressed in ovary /gb=AK235833 /gi=115550758 /ug=Ssc.8408 /len=2130"	GO:0032991//macromolecular complex;GO:0043232;GO:0031410//cytoplasmic vesicle;GO:0012505//endomembrane system;GO:0044431//Golgi apparatus part	GO:0005488//binding	GO:0006952//defense response;GO:0051707//response to other organism;GO:0007033//vacuole organization;GO:0010508//positive regulation of autophagy;GO:0008283//cell proliferation;GO:0043066//negative regulation of apoptosis	gi|113205568|ref|NP_001037995.1|/0/beclin-1 [Sus scrofa]
gnl|UG|Ssc#S46881323	3	0.86	2	0.57	0	0	"Sus scrofa reticulon 2 (RTN2), mRNA /cds=p(10,1422) /gb=NM_001129960 /gi=194018679 /ug=Ssc.54903 /len=1932"	GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0060089	GO:0023052//signaling	gi|194018680|ref|NP_001123432.1|/0/reticulon-2 [Sus scrofa]
gnl|UG|Ssc#S58312904	7	2.02	4	1.14	5	1.5	"PREDICTED: Sus scrofa procollagen galactosyltransferase 1-like (LOC100517457), mRNA /cds=p(34,1905) /gb=XM_003123493 /gi=311249254 /ug=Ssc.42382 /len=3436"	GO:0044432//endoplasmic reticulum part	GO:0035250//UDP-galactosyltransferase activity	GO:0008610//lipid biosynthetic process	gi|311249255|ref|XP_003123541.1|/0/PREDICTED: procollagen galactosyltransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S58310686	3	0.86	12	3.43	0	0	"PREDICTED: Sus scrofa probable histone-lysine N-methyltransferase ASH1L-like (LOC100155920), mRNA /cds=p(1,1302) /gb=XM_003125708 /gi=311254162 /ug=Ssc.75799 /len=1302"	GO:0043296//apical junction complex;GO:0031981//nuclear lumen;GO:0043232	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0016279//protein-lysine N-methyltransferase activity	"GO:0071103//DNA conformation change;GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization;GO:0007154//cell communication"	gi|311254163|ref|XP_003125756.1|/0/PREDICTED: probable histone-lysine N-methyltransferase ASH1L-like [Sus scrofa]
gnl|UG|Ssc#S58301243	14	4.03	5	1.43	6	1.8	"PREDICTED: Sus scrofa chromosome-associated kinesin KIF4A-like (LOC100516479), mRNA /cds=p(63,3767) /gb=XM_003135153 /gi=311276423 /ug=Ssc.1667 /len=4335"	GO:0034399//nuclear periphery;GO:0044444//cytoplasmic part;GO:0005819//spindle	GO:0003676//nucleic acid binding;GO:0003774//motor activity;GO:0032559	GO:0006935//chemotaxis;GO:0008088//axon cargo transport;GO:0007599//hemostasis;GO:0071842	gi|311276424|ref|XP_003135201.1|/0/PREDICTED: chromosome-associated kinesin KIF4A-like [Sus scrofa]
gnl|UG|Ssc#S35171160	492	141.65	840	240.11	382	114.8	"Sus scrofa mRNA, clone:LNG010006C01, expressed in lung /gb=AK231664 /gi=115548679 /ug=Ssc.8565 /len=1013"	GO:0044424//intracellular part	GO:0004842//ubiquitin-protein ligase activity;GO:0019899//enzyme binding;GO:0032559	GO:0019941//modification-dependent protein catabolic process;GO:0000209//protein polyubiquitination	"gi|306440516|pdb|3K9P|A/5.93629e-101/Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex"
gnl|UG|Ssc#S35169832	12	3.45	13	3.72	9	2.7	"Sus scrofa mRNA, clone:LVR010001B07, expressed in liver /gb=AK232242 /gi=115550007 /ug=Ssc.2391 /len=1881"	GO:0000785//chromatin	GO:0005488//binding	GO:0022403;GO:0006310//DNA recombination	gi|147223355|emb|CAN13175.1|/0/kelch domain containing 3 [Sus scrofa]
gnl|UG|Ssc#S18356735	3	0.86	0	0	2	0.6	"907823 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK452220 /gi=40799434 /ug=Ssc.15672 /len=744"	-	-	-	-
gnl|UG|Ssc#S55325176	84	24.18	79	22.58	101	30.35	"Sus scrofa mRNA, clone:PTG010070D08, expressed in pituitary gland /gb=AK349432 /gi=288779696 /ug=Ssc.52584 /len=1941"	-	-	-	-
gnl|UG|Ssc#S35164643	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:UTR010049G01, expressed in uterus /gb=AK240282 /gi=115555083 /ug=Ssc.12390 /len=924"	GO:0032991//macromolecular complex;GO:0031982//vesicle;GO:0043231//intracellular membrane-bounded organelle;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0044297//cell body;GO:0016020//membrane;GO:0044421//extracellular region part	GO:0016209//antioxidant activity;GO:0019787//small conjugating protein ligase activity;GO:0019903//protein phosphatase binding;GO:0046914//transition metal ion binding	"GO:0051704;GO:0001894//tissue homeostasis;GO:0045986//negative regulation of smooth muscle contraction;GO:0001932//regulation of protein phosphorylation;GO:0006281//DNA repair;GO:0045104//intermediate filament cytoskeleton organization;GO:0010557;GO:0044093;GO:0022011//myelination in peripheral nervous system;GO:0050954//sensory perception of mechanical stimulus;GO:0048232//male gamete generation;GO:0016567//protein ubiquitination;GO:0035264//multicellular organism growth;GO:0000737//DNA catabolic process, endonucleolytic;GO:0060122//inner ear receptor stereocilium organization;GO:0010033//response to organic substance;GO:0007568//aging;GO:0006801//superoxide metabolic process;GO:0042743//hydrogen peroxide metabolic process;GO:0043066//negative regulation of apoptosis;GO:0006790//sulfur compound metabolic process;GO:0003015//heart process;GO:0002376//immune system process;GO:0009991//response to extracellular stimulus;GO:0010038//response to metal ion;GO:0022602//ovulation cycle process;GO:0008015//blood circulation;GO:0010894//negative regulation of steroid biosynthetic process;GO:0000165//MAPKKK cascade;GO:0007610//behavior;GO:0006875//cellular metal ion homeostasis;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0000305//response to oxygen radical;GO:0009611//response to wounding;GO:0001816//cytokine production"	gi|298677090|ref|NP_001177351.1|/2.31067e-85/superoxide dismutase [Cu-Zn] [Sus scrofa]
gnl|UG|Ssc#S58308607	11	3.17	9	2.57	8	2.4	"PREDICTED: Sus scrofa MAP7 domain containing 1 (MAP7D1), mRNA /cds=p(1,2325) /gb=XM_003127793 /gi=311258902 /ug=Ssc.1951 /len=3271"	GO:0044424//intracellular part	-	-	gi|311258903|ref|XP_003127841.1|/0/PREDICTED: MAP7 domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58304274	5	1.44	4	1.14	4	1.2	"PREDICTED: Sus scrofa zinc finger protein 619-like (LOC100520697), mRNA /cds=p(1,2763) /gb=XM_003132124 /gi=311268703 /ug=Ssc.94139 /len=2763"	-	GO:0005488//binding	-	gi|311268704|ref|XP_003132172.1|/0/PREDICTED: zinc finger protein 619-like [Sus scrofa]
gnl|UG|Ssc#S35170917	24	6.91	43	12.29	7	2.1	"Sus scrofa mRNA, clone:OVRM10069A02, expressed in ovary /gb=AK235325 /gi=115548922 /ug=Ssc.1002 /len=1981"	GO:0016604//nuclear body;GO:0030529//ribonucleoprotein complex	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	gi|297701877|ref|XP_002827924.1|/1.03387e-45/PREDICTED: hypothetical protein LOC100439801 isoform 2 [Pongo abelii]
gnl|UG|Ssc#S16514484	13	3.74	23	6.57	35	10.52	"806993 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF177968 /gi=33289744 /ug=Ssc.54095 /len=672"	-	-	-	gi|148675210|gb|EDL07157.1|/1.21189e-06/mCG1028256 [Mus musculus]
gnl|UG|Ssc#S55324332	19	5.47	18	5.15	17	5.11	"Sus scrofa mRNA, clone:ADR010084D06, expressed in adrenal gland /gb=AK343526 /gi=288780540 /ug=Ssc.6149 /len=1912"	GO:0031224//intrinsic to membrane;GO:0000323//lytic vacuole	GO:0004871//signal transducer activity;GO:0015929//hexosaminidase activity	GO:0023052//signaling;GO:0030260//entry into host cell;GO:0019048//virus-host interaction;GO:0006027//glycosaminoglycan catabolic process	gi|47523932|ref|NP_999605.1|/0/hyaluronidase-2 [Sus scrofa]
gnl|UG|Ssc#S46877134	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa actin filament-associated protein 1-like 2-like (LOC100157959), mRNA /cds=p(1,2880) /gb=XM_001927099 /gi=311271866 /ug=Ssc.71626 /len=2880"	GO:0044424//intracellular part	GO:0030295//protein kinase activator activity;GO:0019904//protein domain specific binding	"GO:0009967//positive regulation of signal transduction;GO:0000278//mitotic cell cycle;GO:0006952//defense response;GO:0006355//regulation of transcription, DNA-dependent;GO:0001819//positive regulation of cytokine production;GO:0045860//positive regulation of protein kinase activity"	gi|311271867|ref|XP_001927134.2|/0/PREDICTED: actin filament-associated protein 1-like 2-like [Sus scrofa]
gnl|UG|Ssc#S35332329	30	8.64	6	1.72	7	2.1	"SusFleck_BFN_0017_0020_5_pCNS_P04 SusFleck Backfat Normalized Sus scrofa cDNA clone 0017_0020_P04 5', mRNA sequence /clone=0017_0020_P04 /clone_end=5' /gb=DT330726 /gi=116344904 /ug=Ssc.1484 /len=870"	GO:0005887//integral to plasma membrane	GO:0005267//potassium channel activity	GO:0030001//metal ion transport	gi|297704818|ref|XP_002829280.1|/3.38642e-160/PREDICTED: LOW QUALITY PROTEIN: SH3KBP1-binding protein 1-like [Pongo abelii]
gnl|UG|Ssc#S22275888	220	63.34	320	91.47	96	28.85	"CJ012249 full-length enriched swine cDNA library, adult mesenteric lymph node Sus scrofa cDNA clone MLN01A060059 5', mRNA sequence /clone=MLN01A060059 /clone_end=5' /gb=CJ012249 /gi=54506883 /ug=Ssc.20242 /len=844"	-	-	-	-
gnl|UG|Ssc#S6047001	0	0	5	1.43	0	0	"374637 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BI345730 /gi=15039019 /ti=470951488 /ug=Ssc.81107 /len=424"	GO:0005849//mRNA cleavage factor complex	GO:0003729//mRNA binding	"GO:0000377;GO:0031124//mRNA 3'-end processing;GO:0006405//RNA export from nucleus;GO:0006353//transcription termination, DNA-dependent"	gi|33411762|emb|CAD58786.1|/7.95617e-65/cleavage and polyadenylation specificity factor 1 [Bos taurus]
gnl|UG|Ssc#S58314571	44	12.67	80	22.87	51	15.33	"PREDICTED: Sus scrofa uncharacterized protein KIAA0586-like (LOC100515988), mRNA /cds=p(1,1398) /gb=XM_003121834 /gi=311245579 /ug=Ssc.15531 /len=2533"	-	-	-	-
gnl|UG|Ssc#S46880220	80	23.03	132	37.73	70	21.04	"PREDICTED: Sus scrofa putative tumour suppressor/hereditary multiple exostoses candidate gene (LOC100157655), mRNA /cds=p(556,2796) /gb=XM_001924980 /gi=311253456 /ug=Ssc.3325 /len=3181"	-	-	-	-
gnl|UG|Ssc#S58312400	7	2.02	0	0	9	2.7	"PREDICTED: Sus scrofa anion exchange protein 4-like (LOC100513586), mRNA /cds=p(1,3342) /gb=XM_003124012 /gi=311250290 /ug=Ssc.26393 /len=3342"	GO:0044459//plasma membrane part	GO:0015081//sodium ion transmembrane transporter activity;GO:0015301//anion:anion antiporter activity	GO:0015698//inorganic anion transport	gi|311250291|ref|XP_003124060.1|/0/PREDICTED: anion exchange protein 4-like [Sus scrofa]
gnl|UG|Ssc#S36038435	0	0	3	0.86	0	0	"Sus scrofa selenoprotein N (Sepn1) mRNA, partial cds /cds=p(1,1498) /gb=EF113595 /gi=197717772 /ug=Ssc.29389 /len=3248"	GO:0031224//intrinsic to membrane;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|197717773|gb|ABL61083.2|/0/selenoprotein N [Sus scrofa]
gnl|UG|Ssc#S58308715	2	0.58	2	0.57	5	1.5	"PREDICTED: Sus scrofa heparan sulfate proteoglycan 2 (HSPG2), mRNA /cds=p(1,10659) /gb=XM_003127684 /gi=311258682 /ug=Ssc.26357 /len=10659"	GO:0005604//basement membrane;GO:0016020//membrane	GO:0005515//protein binding	GO:0007417//central nervous system development;GO:0043062//extracellular structure organization;GO:0001503//ossification;GO:0044238//primary metabolic process;GO:0051216//cartilage development;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0044260;GO:0048562//embryonic organ morphogenesis;GO:0030154//cell differentiation;GO:0014706//striated muscle tissue development;GO:0033036	gi|311258683|ref|XP_003127732.1|/0/PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Sus scrofa]
gnl|UG|Ssc#S58308814	36	10.36	15	4.29	55	16.53	"PREDICTED: Sus scrofa uncharacterized protein KIAA2013 homolog (LOC100525404), mRNA /cds=p(1,1899) /gb=XM_003127576 /gi=311258475 /ug=Ssc.23830 /len=2606"	GO:0031224//intrinsic to membrane	-	-	gi|311258476|ref|XP_003127624.1|/0/PREDICTED: uncharacterized protein KIAA2013 homolog [Sus scrofa]
gnl|UG|Ssc#S58311161	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa striatin, calmodulin binding protein (STRN), mRNA /cds=p(1,2343) /gb=XM_003125240 /gi=311252828 /ug=Ssc.42439 /len=3824"	GO:0043296//apical junction complex;GO:0030425//dendrite;GO:0044297//cell body;GO:0008287//protein serine/threonine phosphatase complex;GO:0044430//cytoskeletal part	GO:0019903//protein phosphatase binding;GO:0035258//steroid hormone receptor binding;GO:0019904//protein domain specific binding	GO:0007043//cell-cell junction assembly;GO:0031175//neuron projection development;GO:0007610//behavior;GO:0008283//cell proliferation;GO:0007166//cell surface receptor linked signaling pathway	gi|311252829|ref|XP_003125288.1|/0/PREDICTED: striatin-like [Sus scrofa]
gnl|UG|Ssc#S35173718	0	0	0	0	4	1.2	"Sus scrofa mRNA, clone:UTR010058H11, expressed in uterus /gb=AK240359 /gi=115546117 /ug=Ssc.24965 /len=1994"	-	GO:0046872//metal ion binding	-	gi|301778143|ref|XP_002924524.1|/1.61006e-155/PREDICTED: PHD finger protein 23-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S38481515	3	0.86	2	0.57	2	0.6	"EST-AO220A011 Porcine Testis from PRRSV-infected pig Sus scrofa cDNA clone AO220A011, mRNA sequence /clone=AO220A011 /gb=ES446667 /gi=146288257 /ug=Ssc.42089 /len=744"	GO:0030054//cell junction;GO:0043232	GO:0005488//binding;GO:0030695//GTPase regulator activity	GO:0001525//angiogenesis;GO:0035556//intracellular signal transduction;GO:0019725//cellular homeostasis;GO:0030010//establishment of cell polarity;GO:0001935//endothelial cell proliferation;GO:0010594//regulation of endothelial cell migration;GO:0043066//negative regulation of apoptosis	gi|301780094|ref|XP_002925463.1|/2.8233e-58/PREDICTED: krev interaction trapped protein 1-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58300970	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa ATPase, class VI, type 11C (ATP11C), mRNA /cds=p(1,3360) /gb=XM_003135426 /gi=311277055 /ug=Ssc.10626 /len=4131"	GO:0031224//intrinsic to membrane	"GO:0042625//ATPase activity, coupled to transmembrane movement of ions;GO:0046872//metal ion binding;GO:0005548//phospholipid transporter activity;GO:0032559"	GO:0009206;GO:0006811//ion transport;GO:0006869//lipid transport;GO:0009207	gi|311277056|ref|XP_003135474.1|/0/PREDICTED: probable phospholipid-transporting ATPase IG-like [Sus scrofa]
gnl|UG|Ssc#S58308341	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa polo-like kinase 3 (PLK3), mRNA /cds=p(1,1944) /gb=XM_003128058 /gi=311259447 /ug=Ssc.42728 /len=2261"	GO:0043005//neuron projection;GO:0044297//cell body	GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process;GO:0048168//regulation of neuronal synaptic plasticity	gi|311259448|ref|XP_003128106.1|/0/PREDICTED: serine/threonine-protein kinase PLK3 [Sus scrofa]
gnl|UG|Ssc#S46876468	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa Chria protein (LOC100152722), mRNA /cds=p(1,3078) /gb=XM_001927481 /gi=311271089 /ug=Ssc.24756 /len=3789"	GO:0016604//nuclear body;GO:0000785//chromatin	GO:0005488//binding;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity	"GO:0048598//embryonic morphogenesis;GO:0006355//regulation of transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|311271090|ref|XP_001927516.2|/0/PREDICTED: protein HIRA [Sus scrofa]
gnl|UG|Ssc#S35166720	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:THY010115H05, expressed in thymus /gb=AK239605 /gi=115553019 /ug=Ssc.11150 /len=2412"	GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0005488//binding	"GO:0031086//nuclear-transcribed mRNA catabolic process, deadenylation-independent decay"	gi|297282495|ref|XP_001113083.2|/2.03906e-59/PREDICTED: proline-rich nuclear receptor coactivator 2-like isoform 1 [Macaca mulatta]
gnl|UG|Ssc#S58312802	26	7.49	0	0	13	3.91	"PREDICTED: Sus scrofa zinc finger protein 692-like (LOC100525277), mRNA /cds=p(1,1743) /gb=XM_003123601 /gi=311249462 /ug=Ssc.4090 /len=1931"	GO:0005622//intracellular	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding	-	gi|311249463|ref|XP_003123649.1|/0/PREDICTED: zinc finger protein 692-like [Sus scrofa]
gnl|UG|Ssc#S58300898	13	3.74	14	4	17	5.11	"PREDICTED: Sus scrofa methyl-CpG-binding protein 2-like (LOC100524967), mRNA /cds=p(99,1538) /gb=XM_003135493 /gi=311277210 /ug=Ssc.24186 /len=1671"	GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle;GO:0000785//chromatin;GO:0044444//cytoplasmic part	GO:0003690//double-stranded DNA binding;GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0000166//nucleotide binding;GO:0005515//protein binding;GO:0003682//chromatin binding;GO:0003723//RNA binding;GO:0043565//sequence-specific DNA binding;GO:0000217//DNA secondary structure binding	"GO:0016571//histone methylation;GO:0046471//phosphatidylglycerol metabolic process;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0048167//regulation of synaptic plasticity;GO:0022037//metencephalon development;GO:0051899//membrane depolarization;GO:0002209//behavioral defense response;GO:0031175//neuron projection development;GO:0019751;GO:0007613//memory;GO:0008207//C21-steroid hormone metabolic process;GO:0007600//sensory perception;GO:0016458//gene silencing;GO:0044089//positive regulation of cellular component biogenesis;GO:0009605//response to external stimulus;GO:0032940//secretion by cell;GO:0007626//locomotory behavior;GO:0003073;GO:0043066//negative regulation of apoptosis;GO:0051705;GO:0022904//respiratory electron transport chain;GO:0009064//glutamine family amino acid metabolic process;GO:0016573//histone acetylation;GO:0008283//cell proliferation;GO:0007632//visual behavior;GO:0050905//neuromuscular process;GO:0033036;GO:0048469//cell maturation;GO:0040029//regulation of gene expression, epigenetic"	gi|311277211|ref|XP_003135541.1|/7.055e-162/PREDICTED: methyl-CpG-binding protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35167746	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:THY010071D01, expressed in thymus /gb=AK239186 /gi=115551993 /ug=Ssc.7202 /len=3194"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003678//DNA helicase activity;GO:0005515//protein binding;GO:0032559;GO:0043566//structure-specific DNA binding	"GO:0007050//cell cycle arrest;GO:0006261//DNA-dependent DNA replication;GO:0051320;GO:0006351//transcription, DNA-dependent"	gi|114052981|ref|NP_001039699.1|/0/DNA replication licensing factor MCM6 [Bos taurus]
gnl|UG|Ssc#S58308441	4	1.15	3	0.86	6	1.8	"PREDICTED: Sus scrofa nuclear factor 1 A-type-like (LOC100523676), mRNA /cds=p(429,1919) /gb=XM_003127955 /gi=311259244 /ug=Ssc.23178 /len=4826"	GO:0031981//nuclear lumen;GO:0044459//plasma membrane part	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	GO:0019058//viral infectious cycle;GO:0010033//response to organic substance;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|311259245|ref|XP_003128003.1|/0/PREDICTED: nuclear factor 1 A-type-like [Sus scrofa]
gnl|UG|Ssc#S35171879	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10033H06, expressed in ovary /gb=AK234933 /gi=115547956 /ug=Ssc.10123 /len=1400"	-	-	-	gi|296472712|gb|DAA14827.1|/6.98619e-104/hypothetical protein LOC541239 [Bos taurus]
gnl|UG|Ssc#S23016576	171	49.23	122	34.87	172	51.69	"Sus scrofa adiponectin receptor 2 (adipoR2) mRNA, partial cds and 3' UTR /cds=p(1,137) /gb=AY856514 /gi=60419073 /ug=Ssc.2647 /len=2470"	GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity;GO:0046983//protein dimerization activity	GO:0006631//fatty acid metabolic process;GO:0016049//cell growth;GO:0031667//response to nutrient levels;GO:0010828//positive regulation of glucose transport;GO:0048513//organ development;GO:0007165//signal transduction;GO:0022414//reproductive process	gi|57545156|gb|AAW51481.1|/1.8226e-18/adiponectin receptor 2 [Sus scrofa]
gnl|UG|Ssc#S58302239	12	3.45	6	1.72	11	3.31	"PREDICTED: Sus scrofa NOP2/Sun domain family, member 2 (NSUN2), partial mRNA /cds=p(1,2134) /gb=XM_003134158 /gi=311274133 /ug=Ssc.6680 /len=2767"	GO:0031981//nuclear lumen	GO:0016427;GO:0003723//RNA binding	GO:0006399//tRNA metabolic process;GO:0001510//RNA methylation	"gi|311274134|ref|XP_003134206.1|/0/PREDICTED: tRNA (cytosine-5-)-methyltransferase NSUN2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S46880143	0	0	0	0	0	0	"PREDICTED: Sus scrofa natural killer cell receptor 2B4-like (LOC100153635), mRNA /cds=p(168,1277) /gb=XM_001928325 /gi=311253987 /ug=Ssc.32642 /len=2241"	GO:0009986//cell surface;GO:0016020//membrane	GO:0005488//binding	GO:0007599//hemostasis;GO:0002376//immune system process;GO:0023052//signaling	gi|194035812|ref|XP_001928360.1|/0/PREDICTED: natural killer cell receptor 2B4-like [Sus scrofa]
gnl|UG|Ssc#S35170888	35	10.08	11	3.14	14	4.21	"Sus scrofa mRNA, clone:OVRM10072B01, expressed in ovary /gb=AK235354 /gi=115548951 /ug=Ssc.27476 /len=1963"	GO:0035097//histone methyltransferase complex	GO:0005488//binding	GO:0043412	gi|301773986|ref|XP_002922422.1|/0/PREDICTED: microspherule protein 1-like isoform 1 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46881245	6	1.73	0	0	3	0.9	"PREDICTED: Sus scrofa peroxisomal biogenesis factor 3 (PEX3), mRNA /cds=p(1,1419) /gb=XM_001924312 /gi=311243846 /ug=Ssc.22625 /len=2158"	GO:0031231	GO:0005488//binding	GO:0006625//protein targeting to peroxisome	gi|311243847|ref|XP_001924347.2|/0/PREDICTED: peroxisomal biogenesis factor 3 [Sus scrofa]
gnl|UG|Ssc#S24033173	19	5.47	5	1.43	32	9.62	"Sus scrofa class 3 phosphoinositide-3-kinase (PIK3C3) mRNA, complete cds /cds=p(74,2737) /gb=AY823302 /gi=59939292 /ug=Ssc.13366 /len=2966"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0035004//phosphatidylinositol 3-kinase activity;GO:0032559	GO:0051046//regulation of secretion;GO:0048017//inositol lipid-mediated signaling;GO:0007033//vacuole organization;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0046488//phosphatidylinositol metabolic process;GO:0043200//response to amino acid stimulus;GO:0006464//protein modification process;GO:0006508//proteolysis;GO:0006952//defense response	gi|61097883|ref|NP_001012974.1|/0/phosphatidylinositol 3-kinase catalytic subunit type 3 [Sus scrofa]
gnl|UG|Ssc#S46877263	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa Abl-philin 2, transcript variant 2 (LOC100152371), mRNA /cds=p(346,1479) /gb=XM_001928825 /gi=311271700 /ug=Ssc.2316 /len=1950"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups;GO:0046914//transition metal ion binding"	GO:0012501//programmed cell death	gi|194041799|ref|XP_001928860.1|/0/PREDICTED: probable palmitoyltransferase ZDHHC16 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58312189	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa zinc finger protein 62-like (LOC100524927), mRNA /cds=p(41,2671) /gb=XM_003124212 /gi=311250719 /ug=Ssc.47137 /len=3811"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	GO:0010467//gene expression	gi|311250720|ref|XP_003124260.1|/0/PREDICTED: zinc finger protein 62-like [Sus scrofa]
gnl|UG|Ssc#S58305209	9	2.59	2	0.57	20	6.01	"PREDICTED: Sus scrofa exocyst complex component 7 (EXOC7), mRNA /cds=p(58,1818) /gb=XM_003131200 /gi=311266753 /ug=Ssc.47707 /len=1818"	GO:0043234//protein complex;GO:0005813//centrosome;GO:0016020//membrane	GO:0005488//binding	GO:0016192//vesicle-mediated transport	gi|311266754|ref|XP_003131248.1|/0/PREDICTED: exocyst complex component 7-like [Sus scrofa]
gnl|UG|Ssc#S46880049	105	30.23	14	4	68	20.44	"PREDICTED: Sus scrofa CCT3 protein (LOC100154317), partial mRNA /cds=p(1,1029) /gb=XM_001926377 /gi=311254116 /ug=Ssc.902 /len=1264"	GO:0043234//protein complex;GO:0043232;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0005515//protein binding;GO:0032559	GO:0006458//'de novo' protein folding	"gi|311254117|ref|XP_001926412.2|/0/PREDICTED: t-complex protein 1 subunit gamma, partial [Sus scrofa]"
gnl|UG|Ssc#S23760379	5	1.44	5	1.43	7	2.1	"1117712 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN117998 /gi=59812258 /ug=Ssc.45185 /len=721"	-	-	-	gi|293339973|ref|XP_002724710.1|/3.12463e-06/PREDICTED: hypothetical protein [Rattus norvegicus]
gnl|UG|Ssc#S58310385	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa dynein light chain 4, axonemal-like, transcript variant 2 (LOC100520304), mRNA /cds=p(258,575) /gb=XM_003126014 /gi=311255053 /ug=Ssc.5303 /len=1439"	GO:0005815//microtubule organizing center;GO:0030286//dynein complex;GO:0005930//axoneme;GO:0016020//membrane	GO:0016887//ATPase activity;GO:0003774//motor activity	GO:0007017//microtubule-based process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	"gi|5031667|ref|NP_005731.1|/3.30404e-56/dynein light chain 4, axonemal [Homo sapiens]"
gnl|UG|Ssc#S35173821	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:SPL010048H09, expressed in spleen /gb=AK237455 /gi=115546014 /ug=Ssc.34986 /len=3299"	-	GO:0016740//transferase activity	-	gi|311267151|ref|XP_003131428.1|/0/PREDICTED: histone-lysine N-methyltransferase EZH1-like [Sus scrofa]
gnl|UG|Ssc#S55324220	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:AMP010006A02, expressed in alveolar macrophages /gb=AK343638 /gi=288780652 /ug=Ssc.19847 /len=2652"	-	GO:0005488//binding	GO:0032501//multicellular organismal process;GO:0000087//M phase of mitotic cell cycle	gi|311256017|ref|XP_001924525.2|/0/PREDICTED: cell cycle regulator Mat89Bb homolog [Sus scrofa]
gnl|UG|Ssc#S35173370	80	23.03	46	13.15	107	32.16	"Sus scrofa mRNA, clone:AMP010075C06, expressed in alveolar macrophage /gb=AK230984 /gi=115546465 /ug=Ssc.41909 /len=2672"	GO:0005856//cytoskeleton;GO:0016234//inclusion body;GO:0031090//organelle membrane;GO:0031224//intrinsic to membrane;GO:0005783//endoplasmic reticulum	GO:0004871//signal transducer activity;GO:0022892	GO:0006612//protein targeting to membrane	gi|158635942|ref|NP_001098775.1|/1.40229e-80/translocation protein SEC62 [Sus scrofa]
gnl|UG|Ssc#S46880372	70	20.15	32	9.15	52	15.63	"PREDICTED: Sus scrofa cbp/p300-interacting transactivator 2-like (LOC100156022), mRNA /cds=p(255,1076) /gb=XM_001925774 /gi=311243859 /ug=Ssc.9718 /len=1941"	GO:0000785//chromatin;GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0019904//protein domain specific binding	GO:0048729//tissue morphogenesis;GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0003006//developmental process involved in reproduction;GO:0001944//vasculature development;GO:0016337//cell-cell adhesion;GO:0009855//determination of bilateral symmetry;GO:0048545//response to steroid hormone stimulus;GO:0048513//organ development;GO:0051726//regulation of cell cycle;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0048754//branching morphogenesis of a tube;GO:0030154//cell differentiation;GO:0048609//multicellular organismal reproductive process;GO:0006950//response to stress;GO:0007399//nervous system development;GO:0035270//endocrine system development;GO:0001825//blastocyst formation;GO:0016477//cell migration;GO:0043066//negative regulation of apoptosis	gi|194035334|ref|XP_001925809.1|/3.39484e-110/PREDICTED: cbp/p300-interacting transactivator 2-like [Sus scrofa]
gnl|UG|Ssc#S35165682	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LVRM10111B08, expressed in liver /gb=AK233253 /gi=115554044 /ug=Ssc.43963 /len=1868"	GO:0012505//endomembrane system;GO:0044431//Golgi apparatus part;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0030246//carbohydrate binding;GO:0008375//acetylglucosaminyltransferase activity	GO:0009311//oligosaccharide metabolic process;GO:0006487//protein N-linked glycosylation	"gi|190360673|ref|NP_001121954.1|/0/alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Sus scrofa]"
gnl|UG|Ssc#S58310292	125	35.99	98	28.01	60	18.03	"PREDICTED: Sus scrofa hypothetical protein LOC100512050 (LOC100512050), mRNA /cds=p(635,1276) /gb=XM_003126108 /gi=311255265 /ug=Ssc.93808 /len=1298"	GO:0032991//macromolecular complex;GO:0015630//microtubule cytoskeleton	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0005198//structural molecule activity	GO:0007010//cytoskeleton organization;GO:0043623//cellular protein complex assembly;GO:0009207;GO:0007017//microtubule-based process;GO:0006458//'de novo' protein folding	gi|90076342|dbj|BAE87851.1|/0/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S46876376	7	2.02	5	1.43	0	0	"PREDICTED: Sus scrofa zinc finger protein 664-like (LOC100156972), mRNA /cds=p(773,1558) /gb=XM_001926856 /gi=311270561 /ug=Ssc.13110 /len=1960"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|296478550|gb|DAA20665.1|/3.86512e-170/zinc finger protein 664-like [Bos taurus]
gnl|UG|Ssc#S58306693	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa odz, odd Oz/ten-m homolog 4 (Drosophila) (ODZ4), mRNA /cds=p(1,5634) /gb=XM_003129704 /gi=311263598 /ug=Ssc.80175 /len=5634"	-	-	-	gi|311263599|ref|XP_003129752.1|/0/PREDICTED: teneurin-4-like [Sus scrofa]
gnl|UG|Ssc#S19226863	0	0	0	0	2	0.6	"857126 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN070006 /gi=45846063 /ug=Ssc.94837 /len=584"	GO:0043231//intracellular membrane-bounded organelle	GO:0070011;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0019538//protein metabolic process	gi|296231424|ref|XP_002761144.1|/1.85887e-105/PREDICTED: zinc finger protein 90 homolog [Callithrix jacchus]
gnl|UG|Ssc#S35172208	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:ITT010030A06, expressed in intestine /gb=AK231285 /gi=115547627 /ug=Ssc.37013 /len=969"	GO:0005815//microtubule organizing center	-	GO:0000226//microtubule cytoskeleton organization	gi|151554907|gb|AAI48049.1|/2.05906e-71/LOC782821 protein [Bos taurus] 
gnl|UG|Ssc#S58301587	26	7.49	5	1.43	12	3.61	"PREDICTED: Sus scrofa glycyl-tRNA synthetase-like (LOC100512260), mRNA /cds=p(75,2303) /gb=XM_003134806 /gi=311275674 /ug=Ssc.53791 /len=2469"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0044429//mitochondrial part;GO:0000267//cell fraction	GO:0005515//protein binding;GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006887//exocytosis;GO:0006418//tRNA aminoacylation for protein translation;GO:0015960	gi|311275675|ref|XP_003134854.1|/0/PREDICTED: glycyl-tRNA synthetase-like [Sus scrofa]
gnl|UG|Ssc#S58314817	0	0	0	0	0	0	"PREDICTED: Sus scrofa inositol 1,4,5-trisphosphate 3-kinase A (ITPKA), mRNA /cds=p(1,1386) /gb=XM_003121582 /gi=311244945 /ug=Ssc.1733 /len=1773"	-	GO:0051766;GO:0005515//protein binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0019751;GO:0006796//phosphate metabolic process;GO:0023052//signaling	gi|311244946|ref|XP_003121630.1|/0/PREDICTED: inositol-trisphosphate 3-kinase A-like [Sus scrofa]
gnl|UG|Ssc#S31127309	0	0	0	0	2	0.6	"1555832 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY431147 /gi=87232450 /ug=Ssc.5276 /len=701"	-	-	-	gi|194205725|ref|XP_001499705.2|/5.5568e-106/PREDICTED: similar to F-box and leucine-rich repeat protein 15 [Equus caballus]
gnl|UG|Ssc#S41658109	12	3.45	3	0.86	11	3.31	"Sus scrofa interleukin-1 receptor-associated kinase 4 (IRAK4) mRNA, complete cds /cds=p(1,1383) /gb=EU258761 /gi=161137766 /ug=Ssc.46590 /len=1383"	GO:0044444//cytoplasmic part;GO:0031090//organelle membrane	GO:0004672//protein kinase activity;GO:0004871//signal transducer activity;GO:0046872//metal ion binding;GO:0005126//cytokine receptor binding;GO:0032559	GO:0002224//toll-like receptor signaling pathway;GO:0032501//multicellular organismal process;GO:0007166//cell surface receptor linked signaling pathway;GO:0006464//protein modification process	gi|162951817|ref|NP_001106163.1|/0/interleukin-1 receptor-associated kinase 4 [Sus scrofa]
gnl|UG|Ssc#S58309523	4	1.15	0	0	4	1.2	"PREDICTED: Sus scrofa DEAD (Asp-Glu-Ala-As) box polypeptide 19B, transcript variant 1 (DDX19B), mRNA /cds=p(128,1567) /gb=XM_003126872 /gi=311257034 /ug=Ssc.49879 /len=2424"	GO:0005635//nuclear envelope	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0006405//RNA export from nucleus	gi|311257035|ref|XP_003126920.1|/0/PREDICTED: ATP-dependent RNA helicase DDX19B-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S20937835	15	4.32	4	1.14	13	3.91	"AJ649558 CSEQRAN19 Sus scrofa cDNA clone C0003272_N04, mRNA sequence /clone=C0003272_N04 /gb=AJ649558 /gi=49326403 /ug=Ssc.85611 /len=517"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter	"gi|293343427|ref|XP_001079503.2|/5.22762e-94/PREDICTED: transcription factor 25 (basic helix-loop-helix)-like, partial [Rattus norvegicus]"
gnl|UG|Ssc#S40554722	11	3.17	12	3.43	9	2.7	"rthg02_k10.y1 thg Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW641435 /gi=183133091 /ug=Ssc.69694 /len=602"	-	-	-	-
gnl|UG|Ssc#S55834713	0	0	0	0	0	0	"Sus scrofa WD repeat domain 45 (WDR45) mRNA, complete cds /cds=p(134,1216) /gb=HM046518 /gi=296874503 /ug=Ssc.2909 /len=1619"	-	-	-	gi|296235452|ref|XP_002762898.1|/0/PREDICTED: WD repeat domain phosphoinositide-interacting protein 4 [Callithrix jacchus]
gnl|UG|Ssc#S35165235	8	2.3	0	0	6	1.8	"Sus scrofa mRNA, clone:LVRM10160A04, expressed in liver /gb=AK233501 /gi=115554491 /ug=Ssc.6354 /len=1622"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0016564//transcription repressor activity	GO:0014020;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0045597//positive regulation of cell differentiation;GO:0009968//negative regulation of signal transduction;GO:0009855//determination of bilateral symmetry;GO:0003002//regionalization;GO:0008284//positive regulation of cell proliferation	gi|73962093|ref|XP_547659.2|/8.72008e-125/PREDICTED: similar to TG-interacting factor isoform c [Canis familiaris]
gnl|UG|Ssc#S46876229	80	23.03	19	5.43	14	4.21	"PREDICTED: Sus scrofa cholinergic receptor, nicotinic, alpha 1 (muscle) (CHRNA1), mRNA /cds=p(1,1155) /gb=XM_001924322 /gi=311272665 /ug=Ssc.19688 /len=1155"	GO:0045202//synapse;GO:0005887//integral to plasma membrane	GO:0042165//neurotransmitter binding;GO:0005231//excitatory extracellular ligand-gated ion channel activity;GO:0004888//transmembrane receptor activity	GO:0001508//regulation of action potential;GO:0006941//striated muscle contraction;GO:0048741//skeletal muscle fiber development;GO:0006811//ion transport;GO:0050879//multicellular organismal movement;GO:0048589//developmental growth;GO:0007268//synaptic transmission	gi|311272666|ref|XP_001924357.2|/0/PREDICTED: acetylcholine receptor subunit alpha [Sus scrofa]
gnl|UG|Ssc#S38482857	3	0.86	0	0	0	0	"EST-AO236F11 Alveolar macrophage from PRRSV-infected pig Sus scrofa cDNA clone AO236F11, mRNA sequence /clone=AO236F11 /gb=ES448009 /gi=146289599 /ug=Ssc.40324 /len=799"	-	-	-	-
gnl|UG|Ssc#S58310050	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa exportin, tRNA (nuclear export receptor for tRNAs) (XPOT), mRNA /cds=p(410,2170) /gb=XM_003126350 /gi=311255855 /ug=Ssc.74000 /len=2170"	GO:0005635//nuclear envelope;GO:0031981//nuclear lumen	GO:0003723//RNA binding;GO:0022892	GO:0006405//RNA export from nucleus;GO:0015031//protein transport	gi|311255856|ref|XP_003126398.1|/0/PREDICTED: exportin-T-like [Sus scrofa]
gnl|UG|Ssc#S19226899	0	0	5	1.43	3	0.9	"857536 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN070042 /gi=45846099 /ug=Ssc.52829 /len=599"	-	-	-	gi|114587483|ref|XP_516562.2|/7.63861e-09/PREDICTED: similar to ribosomal protein L12 variant [Pan troglodytes]
gnl|UG|Ssc#S46876443	23	6.62	13	3.72	27	8.11	"PREDICTED: Sus scrofa TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) (TRMT2A), mRNA /cds=p(300,2165) /gb=XM_001927785 /gi=311271116 /ug=Ssc.15617 /len=2367"	-	-	-	-
gnl|UG|Ssc#S33578949	18	5.18	53	15.15	46	13.82	"Sus scrofa growth arrest and DNA-damage-inducible protein alpha (GADD45A) mRNA, complete cds /cds=p(290,787) /gb=DQ529285 /gi=108795322 /ug=Ssc.20913 /len=1527"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0012501//programmed cell death;GO:0035556//intracellular signal transduction;GO:0006259//DNA metabolic process;GO:0022402//cell cycle process;GO:0010212//response to ionizing radiation;GO:0051726//regulation of cell cycle;GO:0033554//cellular response to stress;GO:0033673//negative regulation of kinase activity;GO:0009612//response to mechanical stimulus	gi|113205836|ref|NP_001038064.1|/2.88364e-90/growth arrest and DNA damage-inducible protein GADD45 alpha [Sus scrofa]
gnl|UG|Ssc#S58303248	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa kinesin family member 11 (KIF11), mRNA /cds=p(1,3180) /gb=XM_003133148 /gi=311271632 /ug=Ssc.7361 /len=4494"	GO:0005875//microtubule associated complex;GO:0044444//cytoplasmic part;GO:0005819//spindle	GO:0019900//kinase binding;GO:0003774//motor activity;GO:0032559	GO:0007052//mitotic spindle organization;GO:0007067//mitosis;GO:0007599//hemostasis	gi|311271633|ref|XP_003133196.1|/0/PREDICTED: kinesin-like protein KIF11-like [Sus scrofa]
gnl|UG|Ssc#S35168729	24	6.91	28	8	18	5.41	"Sus scrofa mRNA, clone:THY010034G05, expressed in thymus /gb=AK238822 /gi=115550961 /ug=Ssc.32130 /len=3350"	GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0015291//secondary active transmembrane transporter activity;GO:0008028//monocarboxylic acid transmembrane transporter activity	GO:0032787//monocarboxylic acid metabolic process;GO:0006820//anion transport;GO:0002376//immune system process;GO:0007599//hemostasis;GO:0015718//monocarboxylic acid transport	gi|190360615|ref|NP_001121917.1|/0/monocarboxylate transporter 1 [Sus scrofa]
gnl|UG|Ssc#S17525063	21	6.05	5	1.43	0	0	"BX674204 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0038.l.13 5prim, mRNA sequence /clone=scac0038.l.13 /clone_end=5' /gb=BX674204 /gi=90246155 /ug=Ssc.19448 /len=866"	-	-	-	-
gnl|UG|Ssc#S40583395	2	0.58	0	0	0	0	"rute2129b_l11.y1 ute Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW670108 /gi=183155023 /ug=Ssc.92733 /len=576"	GO:0032991//macromolecular complex;GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups;GO:0042277//peptide binding"	GO:0043409//negative regulation of MAPKKK cascade;GO:0032611;GO:0010558;GO:0043407//negative regulation of MAP kinase activity;GO:0006790//sulfur compound metabolic process;GO:0006915//apoptosis;GO:0032682//negative regulation of chemokine production	"gi|311247122|ref|XP_003122498.1|/1.26262e-26/PREDICTED: glutathione S-transferase P-like, partial [Sus scrofa]"
gnl|UG|Ssc#S55324036	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:SPL010005C09, expressed in spleen /gb=AK350172 /gi=288780836 /ug=Ssc.18505 /len=2440"	-	-	-	gi|194043654|ref|XP_001927308.1|/0/PREDICTED: coiled-coil domain-containing protein 93 [Sus scrofa]
gnl|UG|Ssc#S58301070	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa hypothetical protein LOC100511613 (LOC100511613), mRNA /cds=p(1,636) /gb=XM_003135326 /gi=311276829 /ug=Ssc.13219 /len=1991"	GO:0031224//intrinsic to membrane	-	-	gi|109132135|ref|XP_001086671.1|/8.48166e-173/PREDICTED: c1GALT1-specific chaperone 1 isoform 1 [Macaca mulatta]
gnl|UG|Ssc#S58304617	24	6.91	7	2	18	5.41	"PREDICTED: Sus scrofa PHD finger protein 12 (PHF12), mRNA /cds=p(97,3165) /gb=XM_003131775 /gi=311267976 /ug=Ssc.50204 /len=4102"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding	"GO:0006355//regulation of transcription, DNA-dependent"	gi|311267977|ref|XP_003131823.1|/0/PREDICTED: PHD finger protein 12-like [Sus scrofa]
gnl|UG|Ssc#S46880241	8	2.3	0	0	3	0.9	"PREDICTED: Sus scrofa ATPase family, AAA domain containing 2 (ATAD2), mRNA /cds=p(46,4212) /gb=XM_001926030 /gi=311253412 /ug=Ssc.23683 /len=5507"	GO:0031981//nuclear lumen	GO:0017111//nucleoside-triphosphatase activity;GO:0032559	"GO:0009207;GO:0006351//transcription, DNA-dependent"	gi|311253413|ref|XP_001926065.2|/0/PREDICTED: ATPase family AAA domain-containing protein 2 [Sus scrofa]
gnl|UG|Ssc#S46877582	3	0.86	0	0	5	1.5	"PREDICTED: Sus scrofa procollagen C-endopeptidase enhancer 2 (PCOLCE2), mRNA /cds=p(1,1863) /gb=XM_001928893 /gi=311269489 /ug=Ssc.8758 /len=2329"	-	GO:0005539//glycosaminoglycan binding;GO:0008047//enzyme activator activity;GO:0005515//protein binding	GO:0051345//positive regulation of hydrolase activity	gi|311269490|ref|XP_001928928.2|/0/PREDICTED: procollagen C-endopeptidase enhancer 2 [Sus scrofa]
gnl|UG|Ssc#S46877759	351	101.05	223	63.74	279	83.85	"PREDICTED: Sus scrofa copine-4-like (LOC100157532), mRNA /cds=p(1,1674) /gb=XM_001924921 /gi=311268533 /ug=Ssc.11953 /len=2140"	-	-	-	gi|194040763|ref|XP_001924956.1|/0/PREDICTED: copine-4-like [Sus scrofa]
gnl|UG|Ssc#S58313780	10	2.88	3	0.86	19	5.71	"PREDICTED: Sus scrofa metastasis-associated protein MTA2-like (LOC100515941), mRNA /cds=p(415,2370) /gb=XM_003122622 /gi=311247484 /ug=Ssc.19299 /len=3039"	GO:0000118//histone deacetylase complex	"GO:0030528//transcription regulator activity;GO:0016811//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding"	GO:0016568//chromatin modification;GO:0071103//DNA conformation change;GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|311247485|ref|XP_003122670.1|/0/PREDICTED: metastasis-associated protein MTA2-like [Sus scrofa]
gnl|UG|Ssc#S22314061	10	2.88	3	0.86	10	3.01	"CJ021801 full-length enriched swine cDNA library, adult spleen Sus scrofa cDNA clone SPL01A040098 5', mRNA sequence /clone=SPL01A040098 /clone_end=5' /gb=CJ021801 /gi=54526390 /ug=Ssc.25996 /len=827"	GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding;GO:0003824//catalytic activity	-	"gi|301772970|ref|XP_002921921.1|/1.96621e-146/PREDICTED: e3 ubiquitin-protein ligase RNF19B-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S55324084	71	20.44	141	40.3	103	30.95	"Sus scrofa mRNA, clone:SMG010092F09, expressed in submaxillary gland /gb=AK350124 /gi=288780788 /ug=Ssc.25196 /len=1694"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0016301//kinase activity;GO:0032559	GO:0006599;GO:0006796//phosphate metabolic process	"gi|311244870|ref|XP_003121595.1|/0/PREDICTED: creatine kinase U-type, mitochondrial-like isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S55325417	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:PTG010027B10, expressed in pituitary gland /gb=AK349234 /gi=288779409 /ug=Ssc.2838 /len=2364"	GO:0031981//nuclear lumen;GO:0042579//microbody;GO:0031306//intrinsic to mitochondrial outer membrane	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0060089;GO:0019787//small conjugating protein ligase activity	GO:0051640//organelle localization;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0006915//apoptosis;GO:0012502//induction of programmed cell death;GO:0032446//protein modification by small protein conjugation;GO:0007005//mitochondrion organization;GO:0016049//cell growth;GO:0000187//activation of MAPK activity	gi|73950663|ref|XP_544520.2|/3.67794e-178/PREDICTED: similar to CG1134-PA [Canis familiaris]
gnl|UG|Ssc#S35168877	33	9.5	62	17.72	23	6.91	"Sus scrofa mRNA, clone:OVRM10128G09, expressed in ovary /gb=AK235953 /gi=115550878 /ug=Ssc.79905 /len=1985"	-	-	-	"gi|148667039|gb|EDK99455.1|/0/transcriptional adaptor 3 (NGG1 homolog, yeast)-like, isoform CRA_c [Mus musculus]"
gnl|UG|Ssc#S58312157	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa SUN domain-containing protein 1-like (LOC100522311), mRNA /cds=p(21,2390) /gb=XM_003124252 /gi=311250784 /ug=Ssc.10938 /len=4005"	-	-	-	gi|311250785|ref|XP_003124300.1|/0/PREDICTED: SUN domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58311544	23	6.62	2	0.57	17	5.11	"PREDICTED: Sus scrofa UDP-glucuronic acid decarboxylase 1-like (LOC100513145), mRNA /cds=p(1,1710) /gb=XM_003124857 /gi=311252049 /ug=Ssc.2054 /len=2415"	GO:0031224//intrinsic to membrane;GO:0000139//Golgi membrane	GO:0016831//carboxy-lyase activity;GO:0048037//cofactor binding	GO:0006024//glycosaminoglycan biosynthetic process;GO:0030166//proteoglycan biosynthetic process;GO:0032501//multicellular organismal process	gi|311252050|ref|XP_003124905.1|/0/PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Sus scrofa]
gnl|UG|Ssc#S55327004	2	0.58	14	4	2	0.6	"Sus scrofa mRNA, clone:OVR010070G03, expressed in ovary /gb=AK347647 /gi=288777822 /ug=Ssc.43929 /len=2534"	GO:0005815//microtubule organizing center	-	GO:0022402//cell cycle process	gi|311275405|ref|XP_003134722.1|/0/PREDICTED: centrosomal protein of 41 kDa-like [Sus scrofa]
gnl|UG|Ssc#S35164562	7	2.02	6	1.72	3	0.9	"Sus scrofa mRNA, clone:MLN010025H07, expressed in mesenteric lymph node /gb=AK233779 /gi=115555164 /ug=Ssc.17770 /len=972"	GO:0032991//macromolecular complex	GO:0005488//binding;GO:0008168//methyltransferase activity	GO:0006479//protein methylation	gi|187469110|gb|AAI66890.1|/2.29367e-62/Similar to RIKEN cDNA 0610038D11 [Rattus norvegicus]
gnl|UG|Ssc#S46878680	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa Guanosine monophosphate reductase 2 (LOC100154068), mRNA /cds=p(232,1278) /gb=XM_001928014 /gi=311260955 /ug=Ssc.1833 /len=1720"	GO:0044444//cytoplasmic part	"GO:0043169//cation binding;GO:0016657//oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor"	GO:0034404;GO:0006753;GO:0009112	gi|194038855|ref|XP_001928049.1|/0/PREDICTED: hypothetical protein LOC100154068 [Sus scrofa]
gnl|UG|Ssc#S31123459	8	2.3	11	3.14	17	5.11	"1550647 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY427297 /gi=87228600 /ug=Ssc.47717 /len=646"	-	-	-	-
gnl|UG|Ssc#S43509709	5	1.44	10	2.86	12	3.61	"Sus scrofa proline-rich transmembrane protein 1 (PRRT1), mRNA /cds=p(124,1041) /gb=NM_001123170 /gi=178056517 /ug=Ssc.71467 /len=1952"	-	-	-	gi|178056518|ref|NP_001116642.1|/4.06987e-87/proline-rich transmembrane protein 1 [Sus scrofa]
gnl|UG|Ssc#S35167210	2	0.58	0	0	4	1.2	"Sus scrofa mRNA, clone:OVRM10200H12, expressed in ovary /gb=AK236534 /gi=115552529 /ug=Ssc.12429 /len=1550"	GO:0016021//integral to membrane	GO:0005262//calcium channel activity;GO:0005488//binding	GO:0007599//hemostasis;GO:0001775//cell activation;GO:0043270//positive regulation of ion transport;GO:0006816//calcium ion transport;GO:0010959//regulation of metal ion transport	gi|291045408|ref|NP_001166990.1|/1.21752e-144/calcium release-activated calcium channel protein 1 [Sus scrofa]
gnl|UG|Ssc#S35164345	3	0.86	2	0.57	3	0.9	"Sus scrofa mRNA, clone:MLN010091A02, expressed in mesenteric lymph node /gb=AK233994 /gi=115555381 /ug=Ssc.86757 /len=902"	-	-	-	-
gnl|UG|Ssc#S58309462	4	1.15	6	1.72	7	2.1	"PREDICTED: Sus scrofa engulfment and cell motility 3 (ELMO3), mRNA /cds=p(235,2397) /gb=XM_003126932 /gi=311257159 /ug=Ssc.22165 /len=2498"	GO:0043232	GO:0019904//protein domain specific binding	GO:0012501//programmed cell death;GO:0006897//endocytosis	gi|311257160|ref|XP_003126980.1|/0/PREDICTED: engulfment and cell motility protein 3-like [Sus scrofa]
gnl|UG|Ssc#S35168709	673	193.76	344	98.33	1048	314.95	"Sus scrofa mRNA, clone:THY010036A09, expressed in thymus /gb=AK238842 /gi=115550981 /ug=Ssc.53990 /len=1485"	GO:0043231//intracellular membrane-bounded organelle;GO:0015935//small ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0007417//central nervous system development;GO:0051707//response to other organism;GO:0051726//regulation of cell cycle;GO:0031016//pancreas development;GO:0008283//cell proliferation	gi|149409318|ref|XP_001509637.1|/1.44563e-70/PREDICTED: similar to hCG1994130 [Ornithorhynchus anatinus]
gnl|UG|Ssc#S55326887	27	7.77	17	4.86	13	3.91	"Sus scrofa mRNA, clone:OVR010092C02, expressed in ovary /gb=AK347764 /gi=288777939 /ug=Ssc.2652 /len=2023"	GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity	-	gi|301753369|ref|XP_002912539.1|/3.0067e-16/PREDICTED: anthrax toxin receptor 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58311290	5	1.44	0	0	2	0.6	"PREDICTED: Sus scrofa pseudouridylate synthase 10 (PUS10), mRNA /cds=p(41,1639) /gb=XM_003125107 /gi=311252564 /ug=Ssc.6227 /len=3142"	-	GO:0003676//nucleic acid binding;GO:0016866//intramolecular transferase activity	GO:0009451//RNA modification;GO:0006399//tRNA metabolic process	gi|311252565|ref|XP_003125155.1|/0/PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Sus scrofa]
gnl|UG|Ssc#S46916714	0	0	0	0	0	0	"Sus scrofa Kruppel-like factor 14 (KLF14) mRNA, complete cds /cds=p(266,1246) /gb=EU669080 /gi=240215641 /ug=Ssc.73594 /len=2054"	GO:0005622//intracellular	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0006355//regulation of transcription, DNA-dependent"	gi|197251922|ref|NP_001127820.1|/2.69898e-113/Krueppel-like factor 14 [Sus scrofa]
gnl|UG|Ssc#S46876481	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3), transcript variant 1 (SMPD4), mRNA /cds=p(1,2607) /gb=XM_001929588 /gi=311271075 /ug=Ssc.24493 /len=3652"	GO:0044431//Golgi apparatus part;GO:0031090//organelle membrane;GO:0031224//intrinsic to membrane	GO:0043169//cation binding;GO:0004620//phospholipase activity	GO:0006684//sphingomyelin metabolic process	gi|194043412|ref|XP_001929623.1|/0/PREDICTED: sphingomyelin phosphodiesterase 4 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58304736	266	76.58	98	28.01	132	39.67	"PREDICTED: Sus scrofa tripartite motif-containing 37 (TRIM37), mRNA /cds=p(411,3302) /gb=XM_003131662 /gi=311267728 /ug=Ssc.5504 /len=4487"	GO:0042579//microbody	GO:0046914//transition metal ion binding;GO:0003824//catalytic activity	-	gi|114669618|ref|XP_511914.2|/0/PREDICTED: tripartite motif-containing 37 protein [Pan troglodytes]
gnl|UG|Ssc#S35171107	5	1.44	7	2	9	2.7	"Sus scrofa mRNA, clone:LNG010025A03, expressed in lung /gb=AK231798 /gi=115548732 /ug=Ssc.7401 /len=1086"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen	-	GO:0042254//ribosome biogenesis	gi|77736039|ref|NP_001029718.1|/1.11695e-140/ribosome biogenesis protein NSA2 homolog [Bos taurus]
gnl|UG|Ssc#S46877137	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa tudor domain-containing protein 1-like (LOC100157555), mRNA /cds=p(1,4122) /gb=XM_001927041 /gi=311271862 /ug=Ssc.28939 /len=4637"	GO:0043186//P granule;GO:0030529//ribonucleoprotein complex	GO:0046914//transition metal ion binding	GO:0048869;GO:0016458//gene silencing;GO:0022403;GO:0048232//male gamete generation;GO:0034660//ncRNA metabolic process;GO:0003006//developmental process involved in reproduction;GO:0006306//DNA methylation	gi|311271863|ref|XP_001927076.2|/0/PREDICTED: tudor domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58304623	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa suppressor of Ty 6 homolog (S. cerevisiae) (SUPT6H), mRNA /cds=p(1,3138) /gb=XM_003131789 /gi=311267964 /ug=Ssc.82704 /len=3138"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0016787//hydrolase activity	"GO:0016568//chromatin modification;GO:0006355//regulation of transcription, DNA-dependent"	gi|311267965|ref|XP_003131837.1|/0/PREDICTED: transcription elongation factor SPT6-like [Sus scrofa]
gnl|UG|Ssc#S18381463	2	0.58	2	0.57	0	0	"932246 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK461516 /gi=40832797 /ug=Ssc.6832 /len=903"	-	-	-	gi|297274630|ref|XP_002800828.1|/1.12785e-16/PREDICTED: hypothetical protein LOC100428419 [Macaca mulatta]
gnl|UG|Ssc#S16768741	26	7.49	60	17.15	40	12.02	"841004 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF366353 /gi=34169857 /ug=Ssc.83298 /len=574"	-	-	-	-
gnl|UG|Ssc#S6083793	13	3.74	8	2.29	8	2.4	"MI-P-NA-aet-d-11-1-UM.s1 MI-P-NA Sus scrofa cDNA clone MI-P-NA-aet-d-11-1-UM 3', mRNA sequence /clone=MI-P-NA-aet-d-11-1-UM /clone_end=3' /gb=BQ603028 /gi=21549754 /ug=Ssc.50832 /len=595"	-	-	-	-
gnl|UG|Ssc#S58304584	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa gem (nuclear organelle) associated protein 4 (GEMIN4), mRNA /cds=p(1,3180) /gb=XM_003131811 /gi=311268042 /ug=Ssc.24202 /len=3369"	GO:0016604//nuclear body;GO:0044444//cytoplasmic part	GO:0005488//binding	-	gi|311268043|ref|XP_003131859.1|/0/PREDICTED: component of gems 4-like [Sus scrofa]
gnl|UG|Ssc#S35169911	39	11.23	3	0.86	20	6.01	"Sus scrofa mRNA, clone:LNG010094B06, expressed in lung /gb=AK232163 /gi=115549928 /ug=Ssc.84004 /len=1955"	GO:0031981//nuclear lumen;GO:0031461//cullin-RING ubiquitin ligase complex;GO:0044444//cytoplasmic part	GO:0019899//enzyme binding;GO:0019787//small conjugating protein ligase activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0006917//induction of apoptosis;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0051704;GO:0051320;GO:0009653//anatomical structure morphogenesis;GO:0008283//cell proliferation	gi|149410200|ref|XP_001505554.1|/0/PREDICTED: similar to SCF complex protein cul-1 [Ornithorhynchus anatinus]
gnl|UG|Ssc#S18554787	118	33.97	38	10.86	61	18.33	"BX923438 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0019.d.06 5prim, mRNA sequence /clone=scan0019.d.06 /clone_end=5' /gb=BX923438 /gi=90243900 /ug=Ssc.27509 /len=870"	-	-	-	-
gnl|UG|Ssc#S46877844	0	0	0	0	0	0	"PREDICTED: Sus scrofa asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast) (ALG11), mRNA /cds=p(20,1498) /gb=XM_001927096 /gi=194040579 /ug=Ssc.71690 /len=1812"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0005488//binding;GO:0016757//transferase activity, transferring glycosyl groups"	GO:0006487//protein N-linked glycosylation	gi|194040580|ref|XP_001927131.1|/0/PREDICTED: asparagine-linked glycosylation protein 11 homolog [Sus scrofa]
gnl|UG|Ssc#S58303518	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa lysine-specific demethylase 2B-like (LOC100512074), mRNA /cds=p(1,3696) /gb=XM_003132880 /gi=311270604 /ug=Ssc.47930 /len=3771"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	-	gi|311270605|ref|XP_003132928.1|/0/PREDICTED: lysine-specific demethylase 2B-like [Sus scrofa]
gnl|UG|Ssc#S47626215	3	0.86	0	0	3	0.9	"Sus scrofa APPL2 (appl2) mRNA, complete cds /cds=p(1,1989) /gb=FJ183794 /gi=208431899 /ug=Ssc.14851 /len=1989"	-	-	-	gi|209863039|ref|NP_001129433.1|/0/amyloid-like protein 2 [Sus scrofa]
gnl|UG|Ssc#S35173582	24	6.91	8	2.29	13	3.91	"Sus scrofa mRNA, clone:UTR010082B12, expressed in uterus /gb=AK240491 /gi=115546253 /ug=Ssc.49038 /len=1773"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	-	gi|311274977|ref|XP_003134528.1|/0/PREDICTED: LOW QUALITY PROTEIN: zinc finger SWIM domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46879830	10	2.88	5	1.43	6	1.8	"PREDICTED: Sus scrofa DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 (DDX20), mRNA /cds=p(100,2598) /gb=XM_001928544 /gi=311254590 /ug=Ssc.6364 /len=2952"	GO:0016604//nuclear body;GO:0043234//protein complex;GO:0043232;GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	"GO:0003724//RNA helicase activity;GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0003676//nucleic acid binding;GO:0032559;GO:0042623//ATPase activity, coupled"	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0009207;GO:0006915//apoptosis;GO:0012502//induction of programmed cell death;GO:0000387//spliceosomal snRNP assembly	gi|194036459|ref|XP_001928579.1|/0/PREDICTED: probable ATP-dependent RNA helicase DDX20 [Sus scrofa]
gnl|UG|Ssc#S55322030	34	9.79	21	6	16	4.81	"Sus scrofa mRNA, clone:TCH010100D10, expressed in trachea /gb=AK351114 /gi=288782842 /ug=Ssc.47403 /len=1758"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding"	"GO:0006413//translational initiation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|255522881|ref|NP_001157343.1|/0/eukaryotic translation initiation factor 4 gamma 1 [Equus caballus]
gnl|UG|Ssc#S55286604	0	0	0	0	2	0.6	"FS684681 full-length enriched swine cDNA library, adult longissimus Sus scrofa cDNA clone MLTL10081H11 5', mRNA sequence /clone=MLTL10081H11 /clone_end=5' /gb=FS684681 /gi=288287092 /ug=Ssc.75787 /len=574"	-	GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|149728632|ref|XP_001496749.1|/6.04792e-98/PREDICTED: similar to RNA binding protein DEF-3 [Equus caballus]
gnl|UG|Ssc#S35171138	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:LNG010007H10, expressed in lung /gb=AK231686 /gi=115548701 /ug=Ssc.43634 /len=1748"	GO:0031981//nuclear lumen	GO:0003729//mRNA binding;GO:0046914//transition metal ion binding	GO:0006412//translation;GO:0006396//RNA processing;GO:0007623//circadian rhythm	gi|73982920|ref|XP_852303.1|/0/PREDICTED: similar to RNA-binding protein 4 (RNA-binding motif protein 4) (Lark homolog) (Hlark) (RNA-binding motif protein 4a) isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58313528	30	8.64	29	8.29	41	12.32	"PREDICTED: Sus scrofa probable methylthioribulose-1-phosphate dehydratase-like (LOC100525733), mRNA /cds=p(205,933) /gb=XM_003122870 /gi=311247992 /ug=Ssc.19751 /len=1128"	GO:0044424//intracellular part	GO:0043169//cation binding;GO:0005515//protein binding;GO:0016836//hydro-lyase activity	GO:0006915//apoptosis;GO:0071265	gi|311247993|ref|XP_003122918.1|/3.00123e-144/PREDICTED: probable methylthioribulose-1-phosphate dehydratase-like [Sus scrofa]
gnl|UG|Ssc#S58305365	3	0.86	3	0.86	2	0.6	"PREDICTED: Sus scrofa f-box/LRR-repeat protein 3-like (LOC100525124), mRNA /cds=p(319,1608) /gb=XM_003131033 /gi=311266401 /ug=Ssc.2528 /len=3493"	GO:0031461//cullin-RING ubiquitin ligase complex;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0019787//small conjugating protein ligase activity	GO:0007623//circadian rhythm;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation	gi|311266402|ref|XP_003131081.1|/0/PREDICTED: f-box/LRR-repeat protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58304143	3	0.86	2	0.57	0	0	"PREDICTED: Sus scrofa stabilin-1-like (LOC100525609), mRNA /cds=p(1,7203) /gb=XM_003132256 /gi=311269002 /ug=Ssc.5735 /len=7340"	GO:0016021//integral to membrane	GO:0030169//low-density lipoprotein particle binding;GO:0043498//cell surface binding;GO:0004888//transmembrane receptor activity	GO:0006952//defense response;GO:0001525//angiogenesis;GO:0006897//endocytosis;GO:0007154//cell communication	gi|311269003|ref|XP_003132304.1|/0/PREDICTED: stabilin-1-like [Sus scrofa]
gnl|UG|Ssc#S35170798	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:TCH010065D08, expressed in trachea /gb=AK238230 /gi=115549041 /ug=Ssc.5848 /len=1815"	GO:0000139//Golgi membrane;GO:0031224//intrinsic to membrane	"GO:0043169//cation binding;GO:0016758//transferase activity, transferring hexosyl groups"	GO:0006487//protein N-linked glycosylation	"gi|311275029|ref|XP_003134538.1|/1.72199e-128/PREDICTED: beta-1,4-galactosyltransferase 5-like [Sus scrofa]"
gnl|UG|Ssc#S46878819	2	0.58	2	0.57	7	2.1	"PREDICTED: Sus scrofa YLP motif containing 1 (YLPM1), mRNA /cds=p(1,6450) /gb=XM_001924711 /gi=311261349 /ug=Ssc.55950 /len=6907"	-	-	-	gi|194038564|ref|XP_001924746.1|/0/PREDICTED: YLP motif-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46877687	52	14.97	5	1.43	43	12.92	"PREDICTED: Sus scrofa autophagy-related 3, transcript variant 1 (LOC100157190), mRNA /cds=p(420,1364) /gb=XM_001925560 /gi=311270012 /ug=Ssc.7402 /len=1549"	GO:0044444//cytoplasmic part;GO:0000151//ubiquitin ligase complex	GO:0005515//protein binding;GO:0019787//small conjugating protein ligase activity	GO:0044248//cellular catabolic process;GO:0032446//protein modification by small protein conjugation;GO:0006605//protein targeting;GO:0007033//vacuole organization;GO:0000266//mitochondrial fission	gi|311270013|ref|XP_001925595.2|/3.06661e-172/PREDICTED: autophagy-related 3 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55327439	4	1.15	8	2.29	4	1.2	"Sus scrofa mRNA, clone:MLTL10056D10, expressed in longissimus /gb=AK347210 /gi=288576615 /ug=Ssc.57399 /len=1862"	GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton	GO:0008092//cytoskeletal protein binding;GO:0046914//transition metal ion binding;GO:0060089;GO:0019787//small conjugating protein ligase activity	GO:0006511//ubiquitin-dependent protein catabolic process;GO:0003012//muscle system process;GO:0023052//signaling	gi|114052761|ref|NP_001039760.1|/1.21168e-165/E3 ubiquitin-protein ligase TRIM63 [Bos taurus]
gnl|UG|Ssc#S35169868	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:LNG010103F09, expressed in lung /gb=AK232206 /gi=115549971 /ug=Ssc.16376 /len=1498"	-	-	-	-
gnl|UG|Ssc#S55322796	57	16.41	60	17.15	34	10.22	"Sus scrofa mRNA, clone:TCH010022A07, expressed in trachea /gb=AK350747 /gi=288782076 /ug=Ssc.7016 /len=1475"	GO:0005746//mitochondrial respiratory chain	GO:0005515//protein binding	GO:0065003;GO:0022904//respiratory electron transport chain	"gi|311244950|ref|XP_003121658.1|/6.27031e-151/PREDICTED: complex I intermediate-associated protein 30, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58306461	4	1.15	8	2.29	3	0.9	"PREDICTED: Sus scrofa Cas-Br-M (murine) ecotropic retroviral transforming sequence (CBL), mRNA /cds=p(1,2745) /gb=XM_003129932 /gi=311264069 /ug=Ssc.14185 /len=3417"	GO:0043231//intracellular membrane-bounded organelle;GO:0005901//caveola;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0060089;GO:0001071//nucleic acid binding transcription factor activity;GO:0019904//protein domain specific binding;GO:0019787//small conjugating protein ligase activity	GO:0006915//apoptosis;GO:0045807//positive regulation of endocytosis;GO:0032446//protein modification by small protein conjugation;GO:0010467//gene expression;GO:0007173//epidermal growth factor receptor signaling pathway	gi|311264070|ref|XP_003129980.1|/0/PREDICTED: e3 ubiquitin-protein ligase CBL-like [Sus scrofa]
gnl|UG|Ssc#S35167493	10	2.88	6	1.72	4	1.2	"Sus scrofa mRNA, clone:AMP010009D12, expressed in alveolar macrophage /gb=AK230555 /gi=115552246 /ug=Ssc.24824 /len=2089"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0016859//cis-trans isomerase activity	GO:0044267//cellular protein metabolic process	gi|301770283|ref|XP_002920558.1|/0/PREDICTED: peptidyl-prolyl cis-trans isomerase-like 4-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35173232	9	2.59	2	0.57	13	3.91	"Sus scrofa mRNA, clone:OVR010062C03, expressed in ovary /gb=AK234441 /gi=115546603 /ug=Ssc.17238 /len=1665"	-	-	-	-
gnl|UG|Ssc#S58315045	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa zinc finger and BTB domain containing 24 (ZBTB24), mRNA /cds=p(1,2082) /gb=XM_003121357 /gi=311244321 /ug=Ssc.79597 /len=3436"	-	-	-	-
gnl|UG|Ssc#S23695014	0	0	0	0	3	0.9	"1103407 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN106117 /gi=59781380 /ug=Ssc.6449 /len=864"	GO:0016021//integral to membrane;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0051234//establishment of localization	gi|67971892|dbj|BAE02288.1|/2.03838e-141/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S55322771	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:TCH010026D11, expressed in trachea /gb=AK350772 /gi=288782101 /ug=Ssc.44765 /len=3038"	GO:0000323//lytic vacuole;GO:0005768//endosome;GO:0031090//organelle membrane	GO:0019787//small conjugating protein ligase activity	GO:0002376//immune system process;GO:0016567//protein ubiquitination	gi|311262199|ref|XP_003129061.1|/2.89474e-154/PREDICTED: hypothetical protein LOC100518137 [Sus scrofa]
gnl|UG|Ssc#S46879618	2	0.58	6	1.72	2	0.6	"PREDICTED: Sus scrofa kelch/ankyrin repeat containing cyclin A1 interacting protein (LOC100153656), mRNA /cds=p(4,1050) /gb=XM_001927877 /gi=311253978 /ug=Ssc.11855 /len=1166"	-	-	-	gi|194036904|ref|XP_001927912.1|/0/PREDICTED: kelch domain-containing protein 9 [Sus scrofa]
gnl|UG|Ssc#S40442895	7	2.02	12	3.43	4	1.2	"rret36_b12.y1 ret Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW537501 /gi=183089952 /ug=Ssc.41399 /len=620"	-	-	-	-
gnl|UG|Ssc#S18357507	4	1.15	0	0	3	0.9	"908623 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK452948 /gi=40800162 /ug=Ssc.1991 /len=845"	-	-	-	-
gnl|UG|Ssc#S21573750	2	0.58	0	0	0	0	"UMC-pd10en3-007-a11 Endometrium gilt D10 of estrous cycle pd10en Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO986774 /gi=51346048 /ug=Ssc.86528 /len=344"	-	-	-	-
gnl|UG|Ssc#S58303971	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa phakinin-like (LOC100522105), mRNA /cds=p(1,1350) /gb=XM_003132426 /gi=311269404 /ug=Ssc.91276 /len=1350"	GO:0043234//protein complex;GO:0043232	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0048468//cell development;GO:0050953//sensory perception of light stimulus;GO:0007010//cytoskeleton organization;GO:0021700//developmental maturation	gi|311269405|ref|XP_003132474.1|/0/PREDICTED: phakinin-like [Sus scrofa]
gnl|UG|Ssc#S58305307	17	4.89	3	0.86	41	12.32	"PREDICTED: Sus scrofa collagen alpha-1(IV) chain-like (LOC100515336), mRNA /cds=p(1,4998) /gb=XM_003131091 /gi=311266551 /ug=Ssc.6435 /len=6368"	-	-	-	gi|311266552|ref|XP_003131139.1|/0/PREDICTED: collagen alpha-1(IV) chain-like [Sus scrofa]
gnl|UG|Ssc#S46880412	9	2.59	13	3.72	5	1.5	"PREDICTED: Sus scrofa mCG11933, transcript variant 1 (LOC100156873), mRNA /cds=p(463,1767) /gb=XM_001927703 /gi=311244422 /ug=Ssc.24609 /len=5713"	-	-	-	gi|194035248|ref|XP_001927745.1|/0/PREDICTED: protein FAM46A isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58301851	32	9.21	40	11.43	55	16.53	"PREDICTED: Sus scrofa histone-lysine N-methyltransferase MLL3-like (LOC100515350), mRNA /cds=p(9,590) /gb=XM_003134542 /gi=311275135 /ug=Ssc.5779 /len=2540"	GO:0043231//intracellular membrane-bounded organelle;GO:0034708	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0018024//histone-lysine N-methyltransferase activity	"GO:0007165//signal transduction;GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|10568112|gb|AAF74766.2|/5.35075e-106/ALR-like protein [Homo sapiens]
gnl|UG|Ssc#S29980188	166	47.79	180	51.45	198	59.5	"PDUts1157A08 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1157A08 5' similar to homologue to ref|XM_373971.2| Homo sapiens LOC388918 (LOC388918), mRNA, mRNA sequence /clone=PDUts1157A08 /clone_end=5' /gb=CV876846 /gi=84130806 /ug=Ssc.34095 /len=401"	-	-	-	gi|311256802|ref|XP_003126818.1|/5.16839e-24/PREDICTED: uncharacterized protein C22orf41 homolog [Sus scrofa]
gnl|UG|Ssc#S58306350	0	0	3	0.86	2	0.6	"PREDICTED: Sus scrofa CHK1 checkpoint homolog (S. pombe) (CHEK1), mRNA /cds=p(212,1642) /gb=XM_003130047 /gi=311264293 /ug=Ssc.25040 /len=2434"	GO:0044427;GO:0015630//microtubule cytoskeleton;GO:0000228//nuclear chromosome	GO:0004672//protein kinase activity;GO:0032559	GO:0009612//response to mechanical stimulus;GO:0006310//DNA recombination;GO:0008283//cell proliferation;GO:0019953//sexual reproduction;GO:0006468//protein phosphorylation;GO:0000077//DNA damage checkpoint;GO:0031000//response to caffeine	gi|311264294|ref|XP_003130095.1|/0/PREDICTED: serine/threonine-protein kinase Chk1-like [Sus scrofa]
gnl|UG|Ssc#S55254895	5	1.44	0	0	2	0.6	"FS675869 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010068G01 5', mRNA sequence /clone=KDN010068G01 /clone_end=5' /gb=FS675869 /gi=288250098 /ug=Ssc.57110 /len=880"	GO:0005924//cell-substrate adherens junction;GO:0044444//cytoplasmic part;GO:0015629//actin cytoskeleton	"GO:0022891//substrate-specific transmembrane transporter activity;GO:0046914//transition metal ion binding;GO:0030674//protein binding, bridging;GO:0003779//actin binding"	GO:0006811//ion transport	gi|114667747|ref|XP_511445.2|/5.88202e-67/PREDICTED: similar to LIM and SH3 domain protein [Pan troglodytes]
gnl|UG|Ssc#S46881271	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa Uncharacterized protein KIAA1704 (LOC100155483), mRNA /cds=p(77,1123) /gb=XM_001924193 /gi=311266280 /ug=Ssc.13198 /len=1693"	-	-	-	gi|311266281|ref|XP_001924228.2|/3.68364e-166/PREDICTED: uncharacterized protein KIAA1704 [Sus scrofa]
gnl|UG|Ssc#S22271745	0	0	0	0	2	0.6	"CJ008106 full-length enriched swine cDNA library, adult mesenteric lymph node Sus scrofa cDNA clone MLN01H020005 5', mRNA sequence /clone=MLN01H020005 /clone_end=5' /gb=CJ008106 /gi=54498587 /ug=Ssc.39509 /len=820"	-	-	-	gi|148645276|gb|ABR01162.1|/4.86134e-06/endonuclease/reverse transcriptase [Sus scrofa]
gnl|UG|Ssc#S58302589	17	4.89	5	1.43	7	2.1	"PREDICTED: Sus scrofa serine/threonine-protein kinase 25-like (LOC100511107), mRNA /cds=p(277,1578) /gb=XM_003133805 /gi=311273414 /ug=Ssc.19349 /len=2029"	GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0004672//protein kinase activity;GO:0005515//protein binding;GO:0032559	GO:0051640//organelle localization;GO:0031346//positive regulation of cell projection organization;GO:0023052//signaling;GO:0006950//response to stress;GO:0006464//protein modification process	gi|311273415|ref|XP_003133853.1|/0/PREDICTED: serine/threonine-protein kinase 25-like [Sus scrofa]
gnl|UG|Ssc#S46877183	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa protein RRP5 homolog (LOC100157027), mRNA /cds=p(80,5737) /gb=XM_001926774 /gi=194041962 /ug=Ssc.1567 /len=5890"	GO:0044444//cytoplasmic part;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0005515//protein binding	GO:0042254//ribosome biogenesis;GO:0006396//RNA processing	gi|194041963|ref|XP_001926809.1|/0/PREDICTED: protein RRP5 homolog [Sus scrofa]
gnl|UG|Ssc#S24455917	173	49.81	91	26.01	212	63.71	"Sus scrofa ADP-ribosylation factor family-like protein mRNA, complete cds /cds=p(208,750) /gb=AY864620 /gi=62208268 /ug=Ssc.1316 /len=1744"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0007417//central nervous system development;GO:0006810//transport;GO:0035556//intracellular signal transduction;GO:0009611//response to wounding;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009207	gi|114326183|ref|NP_001041537.1|/2.61686e-98/ADP-ribosylation factor family-like protein [Sus scrofa]
gnl|UG|Ssc#S55321719	2	0.58	0	0	13	3.91	"Sus scrofa mRNA, clone:ITT010024F05, expressed in small intestine /gb=AK344966 /gi=288783153 /ug=Ssc.24412 /len=3206"	GO:0044459//plasma membrane part;GO:0043232	GO:0004725//protein tyrosine phosphatase activity;GO:0004871//signal transducer activity;GO:0005515//protein binding	GO:0006470//protein dephosphorylation	gi|311272232|ref|XP_003133357.1|/0/PREDICTED: tyrosine-protein phosphatase non-receptor type 4-like [Sus scrofa]
gnl|UG|Ssc#S39979181	5	1.44	7	2	0	0	"rebs21c_g7.y1 ebs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW074246 /gi=181274334 /ug=Ssc.66820 /len=604"	-	-	-	gi|300872546|gb|ADK39026.1|/7.30371e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S21656162	2808	808.44	2494	712.91	2405	722.77	"Sus scrofa COFILIN protein (COFILIN), mRNA /cds=p(364,864) /gb=NM_001004043 /gi=51592134 /ug=Ssc.716 /len=1390"	GO:0034399//nuclear periphery;GO:0015629//actin cytoskeleton;GO:0031252//cell leading edge;GO:0044444//cytoplasmic part	GO:0008092//cytoskeletal protein binding	GO:0007265//Ras protein signal transduction;GO:0014020;GO:0007599//hemostasis;GO:0007163//establishment or maintenance of cell polarity;GO:0001667//ameboidal cell migration;GO:0051707//response to other organism;GO:0010033//response to organic substance;GO:0006605//protein targeting;GO:0006887//exocytosis;GO:0008361//regulation of cell size;GO:0001101//response to acid;GO:0006935//chemotaxis;GO:0006464//protein modification process;GO:0001775//cell activation;GO:0030042//actin filament depolymerization;GO:0043066//negative regulation of apoptosis	gi|297664957|ref|XP_002810887.1|/9.6606e-106/PREDICTED: cofilin-1-like [Pongo abelii]
gnl|UG|Ssc#S58309223	37	10.65	57	16.29	23	6.91	"PREDICTED: Sus scrofa glycogen synthase kinase-3 alpha-like (LOC100515208), mRNA /cds=p(1,1452) /gb=XM_003127173 /gi=311257644 /ug=Ssc.26436 /len=1708"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0051018//protein kinase A binding;GO:0032559	GO:0001934//positive regulation of protein phosphorylation;GO:0043086//negative regulation of catalytic activity;GO:0032868//response to insulin stimulus;GO:0048017//inositol lipid-mediated signaling;GO:0010829//negative regulation of glucose transport;GO:0009968//negative regulation of signal transduction;GO:0048870//cell motility;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0003143//embryonic heart tube morphogenesis;GO:0014070//response to organic cyclic compound;GO:0006258//UDP-glucose catabolic process;GO:0055001//muscle cell development;GO:0009896;GO:0010226//response to lithium ion	gi|311257645|ref|XP_003127221.1|/0/PREDICTED: glycogen synthase kinase-3 alpha-like [Sus scrofa]
gnl|UG|Ssc#S55322119	8	2.3	4	1.14	3	0.9	"Sus scrofa mRNA, clone:TCH010077H04, expressed in trachea /gb=AK351025 /gi=288782753 /ug=Ssc.15709 /len=1663"	-	-	-	-
gnl|UG|Ssc#S58311453	2	0.58	0	0	4	1.2	"PREDICTED: Sus scrofa UPF0561 protein C2orf68 homolog (LOC100518961), mRNA /cds=p(102,602) /gb=XM_003124943 /gi=311252232 /ug=Ssc.9491 /len=1566"	-	-	-	gi|311252233|ref|XP_003124991.1|/1.5396e-70/PREDICTED: UPF0561 protein C2orf68 homolog [Sus scrofa]
gnl|UG|Ssc#S55326703	116	33.4	114	32.59	172	51.69	"Sus scrofa mRNA, clone:OVRM10024F07, expressed in ovary /gb=AK347948 /gi=288778123 /ug=Ssc.48775 /len=1520"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0019866//organelle inner membrane	GO:0004152//dihydroorotate dehydrogenase activity	GO:0019856//pyrimidine base biosynthetic process;GO:0006915//apoptosis;GO:0006213//pyrimidine nucleoside metabolic process;GO:0009174;GO:0000266//mitochondrial fission	"gi|62751827|ref|NP_001015650.1|/0/dihydroorotate dehydrogenase, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S58306117	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa protein disulfide-isomerase A4-like (LOC100522203), mRNA /cds=p(396,2336) /gb=XM_003130278 /gi=311264772 /ug=Ssc.8970 /len=3130"	GO:0044432//endoplasmic reticulum part;GO:0048770	"GO:0016862//intramolecular oxidoreductase activity, interconverting keto- and enol-groups;GO:0005488//binding;GO:0015036//disulfide oxidoreductase activity"	GO:0018904;GO:0019725//cellular homeostasis;GO:0015031//protein transport	gi|311264773|ref|XP_003130326.1|/0/PREDICTED: protein disulfide-isomerase A4-like [Sus scrofa]
gnl|UG|Ssc#S35171953	2	0.58	3	0.86	2	0.6	"Sus scrofa mRNA, clone:OVRM10024B02, expressed in ovary /gb=AK234858 /gi=115547882 /ug=Ssc.44792 /len=2012"	GO:0005815//microtubule organizing center;GO:0031981//nuclear lumen;GO:0030427//site of polarized growth	-	GO:0048869;GO:0048731;GO:0008285//negative regulation of cell proliferation;GO:0043409//negative regulation of MAPKKK cascade;GO:0001817//regulation of cytokine production	gi|118403792|ref|NP_001072151.1|/1.04815e-178/NDRG2 [Sus scrofa]
gnl|UG|Ssc#S55296742	3	0.86	2	0.57	5	1.5	"FS703002 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010078E01 5', mRNA sequence /clone=PST010078E01 /clone_end=5' /gb=FS703002 /gi=288299076 /ug=Ssc.27325 /len=836"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0045596//negative regulation of cell differentiation;GO:0000209//protein polyubiquitination;GO:0019941//modification-dependent protein catabolic process;GO:0010033//response to organic substance;GO:0000904//cell morphogenesis involved in differentiation	gi|194226237|ref|XP_001493113.2|/5.83676e-146/PREDICTED: similar to tetratricopeptide repeat domain 3 [Equus caballus]
gnl|UG|Ssc#S29990650	15	4.32	65	18.58	24	7.21	"PDUts2097B06 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2097B06 3' similar to homologue to emb|AL354950.8| Human DNA sequence from clone RP11-234G16 on chromosome 10, complete sequence, mRNA sequence /clone=PDUts2097B06 /clone_end=3' /gb=CX065124 /gi=84141266 /ug=Ssc.1185 /len=656"	-	-	-	-
gnl|UG|Ssc#S29287394	56	16.12	38	10.86	48	14.43	"Sus scrofa microtubule-associated protein RP/EB family member 1 (MAPRE1) mRNA, complete cds /cds=p(78,884) /gb=DQ225363 /gi=81174751 /ug=Ssc.2146 /len=2609"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0005874//microtubule;GO:0044459//plasma membrane part	GO:0008017//microtubule binding	GO:0031111//negative regulation of microtubule polymerization or depolymerization;GO:0033365//protein localization to organelle;GO:0007067//mitosis	gi|73945697|ref|XP_851025.1|/6.66e-152/PREDICTED: similar to Microtubule-associated protein RP/EB family member 1 (APC-binding protein EB1) (End-binding protein 1) (EB1) [Canis familiaris]
gnl|UG|Ssc#S50013347	15	4.32	14	4	32	9.62	"Sus scrofa sarcoglycan alpha mRNA, complete cds /cds=p(16,1167) /gb=FJ481167 /gi=218664746 /ug=Ssc.48089 /len=1194"	GO:0030054//cell junction;GO:0043232;GO:0016011//dystroglycan complex;GO:0016021//integral to membrane	GO:0046872//metal ion binding	GO:0003012//muscle system process;GO:0009987//cellular process;GO:0048513//organ development	gi|221136944|ref|NP_001137594.1|/0/alpha-sarcoglycan [Sus scrofa]
gnl|UG|Ssc#S55319795	4	1.15	2	0.57	5	1.5	"Sus scrofa mRNA, clone:THY010118A02, expressed in thymus /gb=AK351970 /gi=288785089 /ug=Ssc.58477 /len=1807"	-	-	-	gi|114596338|ref|XP_001150770.1|/4.59727e-25/PREDICTED: hypothetical protein [Pan troglodytes]
gnl|UG|Ssc#S6088967	6	1.73	10	2.86	6	1.8	"MI-P-HO-afx-g-02-1-UM.s1 MI-P-HO Sus scrofa cDNA clone MI-P-HO-afx-g-02-1-UM 3', mRNA sequence /clone=MI-P-HO-afx-g-02-1-UM /clone_end=3' /gb=BQ601826 /gi=21548552 /ug=Ssc.1666 /len=580"	-	-	-	-
gnl|UG|Ssc#S35168042	76	21.88	201	57.46	87	26.15	"Sus scrofa mRNA, clone:THY010064C08, expressed in thymus /gb=AK239112 /gi=115551648 /ug=Ssc.11972 /len=1803"	GO:0000267//cell fraction;GO:0031252//cell leading edge;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0032561;GO:0017048//Rho GTPase binding	GO:0035556//intracellular signal transduction;GO:0007010//cytoskeleton organization;GO:0030031//cell projection assembly	gi|296217397|ref|XP_002754992.1|/0/PREDICTED: arfaptin-2 isoform 1 [Callithrix jacchus]
gnl|UG|Ssc#S58304209	0	0	0	0	0	0	"PREDICTED: Sus scrofa collagen, type VII, alpha 1 (COL7A1), mRNA /cds=p(1,8838) /gb=XM_003132189 /gi=311268856 /ug=Ssc.39484 /len=8838"	-	-	-	gi|311268857|ref|XP_003132237.1|/0/PREDICTED: collagen alpha-1(VII) chain-like [Sus scrofa]
gnl|UG|Ssc#S18334506	428	123.22	190	54.31	234	70.32	"BP461572 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRM10191H03 5', mRNA sequence /clone=OVRM10191H03 /clone_end=5' /gb=BP461572 /gi=40478795 /ug=Ssc.79659 /len=644"	-	-	-	-
gnl|UG|Ssc#S35167582	43	12.38	23	6.57	41	12.32	"Sus scrofa mRNA, clone:THY010095G01, expressed in thymus /gb=AK239350 /gi=115552157 /ug=Ssc.55994 /len=1411"	GO:0044424//intracellular part	GO:0019904//protein domain specific binding	GO:0032501//multicellular organismal process;GO:0023052//signaling	gi|47522836|ref|NP_999170.1|/5.38482e-112/osteoclast-stimulating factor 1 [Sus scrofa]
gnl|UG|Ssc#S20938552	26	7.49	9	2.57	16	4.81	"AJ650275 CSEQRAN19 Sus scrofa cDNA clone C0003274_O13, mRNA sequence /clone=C0003274_O13 /gb=AJ650275 /gi=49327120 /ug=Ssc.85647 /len=491"	GO:0000323//lytic vacuole;GO:0009986//cell surface;GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0042995//cell projection;GO:0043025//neuronal cell body;GO:0000267//cell fraction	GO:0004175//endopeptidase activity;GO:0008238//exopeptidase activity;GO:0005515//protein binding	GO:0012501//programmed cell death;GO:0031669//cellular response to nutrient levels;GO:0009746;GO:0019538//protein metabolic process;GO:0007399//nervous system development;GO:0048232//male gamete generation;GO:0031960//response to corticosteroid stimulus;GO:0048754//branching morphogenesis of a tube;GO:0008406//gonad development	gi|6978723|ref|NP_037288.1|/2.49528e-76/cathepsin L1 preproprotein [Rattus norvegicus]
gnl|UG|Ssc#S27877968	213	61.32	245	70.03	142	42.67	"Sus scrofa chromosome 17 clone pkmCon86, mRNA sequence /gb=AY803117 /gi=61696654 /ug=Ssc.38671 /len=1437"	-	-	-	gi|90078088|dbj|BAE88724.1|/7.42497e-16/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S35172854	77	22.17	14	4	66	19.83	"Sus scrofa mRNA, clone:AMP010085A03, expressed in alveolar macrophage /gb=AK231036 /gi=115546981 /ug=Ssc.54490 /len=1972"	GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0031981//nuclear lumen	GO:0005515//protein binding;GO:0032559	GO:0051084//'de novo' posttranslational protein folding	"gi|114645817|ref|XP_509216.2|/0/PREDICTED: chaperonin containing TCP1, subunit 2 [Pan troglodytes]"
gnl|UG|Ssc#S46876405	27	7.77	24	6.86	31	9.32	"PREDICTED: Sus scrofa checkpoint with forkhead and ring finger domains, transcript variant 1 (CHFR), mRNA /cds=p(212,2194) /gb=XM_001928455 /gi=311270510 /ug=Ssc.28962 /len=3208"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0000075//cell cycle checkpoint;GO:0019941//modification-dependent protein catabolic process;GO:0000087//M phase of mitotic cell cycle;GO:0016567//protein ubiquitination	gi|194043570|ref|XP_001928490.1|/0/PREDICTED: e3 ubiquitin-protein ligase CHFR isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58308028	13	3.74	2	0.57	8	2.4	"PREDICTED: Sus scrofa mitochondrial carrier homolog 1, transcript variant 2 (LOC100152609), mRNA /cds=p(32,1201) /gb=XM_003128370 /gi=311260333 /ug=Ssc.3750 /len=1985"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0019866//organelle inner membrane	GO:0005488//binding	GO:0006915//apoptosis;GO:0016044//cellular membrane organization;GO:0051234//establishment of localization;GO:0007165//signal transduction	gi|311260334|ref|XP_003128418.1|/0/PREDICTED: mitochondrial carrier homolog 1 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58313393	3	0.86	3	0.86	0	0	"PREDICTED: Sus scrofa transcription factor E2-alpha-like (LOC100524070), mRNA /cds=p(255,2183) /gb=XM_003122995 /gi=311248266 /ug=Ssc.20611 /len=3078"	GO:0031981//nuclear lumen;GO:0000786//nucleosome;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0042802//identical protein binding;GO:0010843//promoter binding;GO:0008134//transcription factor binding	GO:0031647//regulation of protein stability;GO:0045597//positive regulation of cell differentiation;GO:0016447//somatic recombination of immunoglobulin gene segments;GO:0030183//B cell differentiation;GO:0048537//mucosal-associated lymphoid tissue development;GO:0030888//regulation of B cell proliferation;GO:0051318//G1 phase;GO:0051726//regulation of cell cycle;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0002237//response to molecule of bacterial origin;GO:0016573//histone acetylation	gi|311248267|ref|XP_003123043.1|/0/PREDICTED: LOW QUALITY PROTEIN: transcription factor E2-alpha-like [Sus scrofa]
gnl|UG|Ssc#S40572729	0	0	0	0	2	0.6	"rtra01_m1r1.y1 tra Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW659442 /gi=183168161 /ug=Ssc.39875 /len=456"	-	-	-	-
gnl|UG|Ssc#S58313329	14	4.03	10	2.86	19	5.71	"PREDICTED: Sus scrofa endophilin-A2-like (LOC100523947), mRNA /cds=p(194,1303) /gb=XM_003123066 /gi=311248395 /ug=Ssc.11014 /len=2491"	GO:0005769//early endosome;GO:0000267//cell fraction	GO:0019899//enzyme binding	GO:0007399//nervous system development;GO:0016192//vesicle-mediated transport;GO:0023052//signaling	gi|311248396|ref|XP_003123114.1|/0/PREDICTED: endophilin-A2-like [Sus scrofa]
gnl|UG|Ssc#S43495709	0	0	2	0.57	0	0	"BW999843 full-length enriched pig cDNA library, main and accessory cerebral lymphocyte Sus scrofa cDNA clone HY_AlphaBeta_6.4_E06_f 5', mRNA sequence /clone=HY_AlphaBeta_6.4_E06_f /clone_end=5' /gb=BW999843 /gi=179428872 /ug=Ssc.38227 /len=946"	GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0004672//protein kinase activity;GO:0032559	GO:0050896//response to stimulus;GO:0006468//protein phosphorylation;GO:0046488//phosphatidylinositol metabolic process;GO:0006259//DNA metabolic process;GO:0006405//RNA export from nucleus;GO:0000956//nuclear-transcribed mRNA catabolic process	gi|73959020|ref|XP_851552.1|/3.51097e-122/PREDICTED: similar to PI-3-kinase-related kinase SMG-1 [Canis familiaris]
gnl|UG|Ssc#S58312574	358	103.07	123	35.16	609	183.02	"PREDICTED: Sus scrofa WD repeat domain 36 (WDR36), mRNA /cds=p(1,2565) /gb=XM_003123829 /gi=311249932 /ug=Ssc.61711 /len=2755"	GO:0030684//preribosome	-	GO:0050953//sensory perception of light stimulus;GO:0042254//ribosome biogenesis	gi|311249933|ref|XP_003123877.1|/0/PREDICTED: WD repeat-containing protein 36-like [Sus scrofa]
gnl|UG|Ssc#S40091110	29	8.35	20	5.72	26	7.81	"rfce18c_i8.y1 fce Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW186017 /gi=182619323 /ug=Ssc.64831 /len=604"	-	-	-	gi|300872546|gb|ADK39026.1|/7.30371e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S55322657	138	39.73	115	32.87	88	26.45	"Sus scrofa mRNA, clone:DCI010045H05, expressed in dendritic cells (immature) /gb=AK344426 /gi=288782215 /ug=Ssc.9541 /len=1645"	GO:0043231//intracellular membrane-bounded organelle	"GO:0005488//binding;GO:0004468//lysine N-acetyltransferase activity;GO:0016769//transferase activity, transferring nitrogenous groups"	GO:0071103//DNA conformation change;GO:0006473//protein acetylation;GO:0031667//response to nutrient levels;GO:0006342//chromatin silencing;GO:0016570//histone modification	gi|194222303|ref|XP_001494952.2|/0/PREDICTED: similar to HAT1 protein [Equus caballus]
gnl|UG|Ssc#S58303024	0	0	4	1.14	4	1.2	"PREDICTED: Sus scrofa zinc finger protein 703 (ZNF703), mRNA /cds=p(1,1779) /gb=XM_003133370 /gi=311272384 /ug=Ssc.94067 /len=1779"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0016564//transcription repressor activity	GO:0009653//anatomical structure morphogenesis;GO:0033598//mammary gland epithelial cell proliferation;GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0071842;GO:0009966//regulation of signal transduction;GO:0030855//epithelial cell differentiation;GO:0007049//cell cycle	gi|311272385|ref|XP_003133418.1|/0/PREDICTED: zinc finger protein 703-like [Sus scrofa]
gnl|UG|Ssc#S58313582	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa lysosomal acid phosphatase-like (LOC100513002), mRNA /cds=p(37,1308) /gb=XM_003122812 /gi=311247884 /ug=Ssc.22033 /len=2982"	GO:0031224//intrinsic to membrane;GO:0005764//lysosome;GO:0005624//membrane fraction;GO:0031982//vesicle	GO:0045309//protein phosphorylated amino acid binding;GO:0016791//phosphatase activity	GO:0012501//programmed cell death;GO:0048731;GO:0007267//cell-cell signaling;GO:0006796//phosphate metabolic process;GO:0042221//response to chemical stimulus;GO:0007033//vacuole organization	gi|311247885|ref|XP_003122860.1|/0/PREDICTED: lysosomal acid phosphatase-like [Sus scrofa]
gnl|UG|Ssc#S35171315	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10053A06, expressed in ovary /gb=AK235141 /gi=115548524 /ug=Ssc.30252 /len=4071"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0030234//enzyme regulator activity	"GO:0014020;GO:0016055//Wnt receptor signaling pathway;GO:0001667//ameboidal cell migration;GO:0009952//anterior/posterior pattern formation;GO:0006355//regulation of transcription, DNA-dependent;GO:0021543//pallium development;GO:0043406//positive regulation of MAP kinase activity"	gi|301760450|ref|XP_002916018.1|/1.16533e-84/PREDICTED: LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S6007557	0	0	0	0	2	0.6	"322581 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BG609064 /gi=13659042 /ti=448053258 /ug=Ssc.49047 /len=579"	GO:0005769//early endosome;GO:0031090//organelle membrane	GO:0046914//transition metal ion binding	GO:0007599//hemostasis;GO:0016192//vesicle-mediated transport	gi|296225937|ref|XP_002758732.1|/8.22599e-58/PREDICTED: rabenosyn-5 [Callithrix jacchus]
gnl|UG|Ssc#S58309878	29	8.35	24	6.86	7	2.1	"PREDICTED: Sus scrofa complement component 1, r subcomponent (C1R), mRNA /cds=p(170,2290) /gb=XM_003126517 /gi=311256248 /ug=Ssc.9951 /len=2870"	-	GO:0046872//metal ion binding;GO:0004175//endopeptidase activity	GO:0019538//protein metabolic process;GO:0006952//defense response;GO:0002455//humoral immune response mediated by circulating immunoglobulin	gi|311256249|ref|XP_003126565.1|/0/PREDICTED: complement C1r subcomponent [Sus scrofa]
gnl|UG|Ssc#S58303298	0	0	0	0	0	0	"PREDICTED: Sus scrofa bone morphogenetic protein receptor type-1A-like (LOC100516517), mRNA /cds=p(160,558) /gb=XM_003133098 /gi=311271466 /ug=Ssc.89435 /len=558"	GO:0031224//intrinsic to membrane;GO:0044459//plasma membrane part	GO:0004675//transmembrane receptor protein serine/threonine kinase activity;GO:0042802//identical protein binding;GO:0032559;GO:0043169//cation binding	GO:0001934//positive regulation of protein phosphorylation;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0045597//positive regulation of cell differentiation;GO:0030282//bone mineralization;GO:0002376//immune system process;GO:0042307//positive regulation of protein import into nucleus	gi|311271467|ref|XP_003133146.1|/1.39066e-75/PREDICTED: bone morphogenetic protein receptor type-1A-like [Sus scrofa]
gnl|UG|Ssc#S46879839	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa putative homeodomain transcription factor 1 (PHTF1), mRNA /cds=p(526,2814) /gb=XM_001925111 /gi=311254561 /ug=Ssc.39379 /len=3421"	GO:0031224//intrinsic to membrane;GO:0044431//Golgi apparatus part	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0048232//male gamete generation;GO:0006351//transcription, DNA-dependent"	gi|311254562|ref|XP_001925146.2|/0/PREDICTED: putative homeodomain transcription factor 1 [Sus scrofa]
gnl|UG|Ssc#S35173487	0	0	0	0	0	0	"Sus scrofa mRNA, clone:AMP010057C10, expressed in alveolar macrophage /gb=AK230867 /gi=115546348 /ug=Ssc.43679 /len=2139"	-	GO:0003676//nucleic acid binding	GO:0006259//DNA metabolic process	gi|73952245|ref|XP_546001.2|/0/PREDICTED: hypothetical protein XP_546001 [Canis familiaris]
gnl|UG|Ssc#S58307743	2	0.58	7	2	2	0.6	"PREDICTED: Sus scrofa lysine-specific demethylase NO66-like (LOC100523074), mRNA /cds=p(1,1938) /gb=XM_003128651 /gi=311261318 /ug=Ssc.47552 /len=2425"	GO:0031981//nuclear lumen;GO:0030684//preribosome	"GO:0032452//histone demethylase activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0016706//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	"GO:0045596//negative regulation of cell differentiation;GO:0006355//regulation of transcription, DNA-dependent;GO:0022613//ribonucleoprotein complex biogenesis;GO:0070076//histone lysine demethylation"	gi|311261319|ref|XP_003128699.1|/0/PREDICTED: lysine-specific demethylase NO66-like [Sus scrofa]
gnl|UG|Ssc#S55324398	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:SMG010030A01, expressed in submaxillary gland /gb=AK350008 /gi=288780474 /ug=Ssc.19071 /len=1285"	GO:0031981//nuclear lumen	GO:0005488//binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0010467//gene expression	gi|189053483|dbj|BAG35649.1|/0/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S55323641	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:SPL010047F03, expressed in spleen /gb=AK350370 /gi=288781231 /ug=Ssc.59288 /len=1616"	-	-	-	-
gnl|UG|Ssc#S35166522	73	21.02	51	14.58	71	21.34	"Sus scrofa mRNA, clone:LVRM10068C09, expressed in liver /gb=AK233014 /gi=115553216 /ug=Ssc.786 /len=2281"	GO:0005849//mRNA cleavage factor complex	GO:0043169//cation binding;GO:0003723//RNA binding;GO:0004519//endonuclease activity;GO:0004527//exonuclease activity	"GO:0000377;GO:0031124//mRNA 3'-end processing;GO:0006405//RNA export from nucleus;GO:0008334//histone mRNA metabolic process;GO:0006353//transcription termination, DNA-dependent"	"gi|73979708|ref|XP_540075.2|/0/PREDICTED: similar to Cleavage and polyadenylation specificity factor, 73 kDa subunit (CPSF 73 kDa subunit) isoform 1 [Canis familiaris]"
gnl|UG|Ssc#S58302660	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa PERQ amino acid-rich with GYF domain-containing protein 2-like (LOC100524285), mRNA /cds=p(1,522) /gb=XM_003133736 /gi=311273253 /ug=Ssc.38448 /len=1103"	-	-	-	gi|311273254|ref|XP_003133784.1|/8.35768e-51/PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S18553776	182	52.4	130	37.16	148	44.48	"BX922427 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0010.c.11 5prim, mRNA sequence /clone=scan0010.c.11 /clone_end=5' /gb=BX922427 /gi=90237011 /ug=Ssc.55664 /len=812"	GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|194208748|ref|XP_001497169.2|/3.83037e-127/PREDICTED: similar to Cirhin [Equus caballus]
gnl|UG|Ssc#S58312876	12	3.45	0	0	3	0.9	"PREDICTED: Sus scrofa CREB regulated transcription coactivator 1, transcript variant 2 (CRTC1), mRNA /cds=p(1,1950) /gb=XM_003123525 /gi=311249314 /ug=Ssc.66865 /len=2310"	GO:0031981//nuclear lumen;GO:0016020//membrane	GO:0005488//binding;GO:0003713//transcription coactivator activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0051704	gi|311249315|ref|XP_003123573.1|/0/PREDICTED: CREB-regulated transcription coactivator 1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S46877567	28	8.06	11	3.14	11	3.31	"PREDICTED: Sus scrofa hypothetical protein LOC100152755 (LOC100152755), mRNA /cds=p(1,834) /gb=XM_001925561 /gi=311269600 /ug=Ssc.18679 /len=2331"	GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding	-	gi|297286509|ref|XP_001093190.2|/0/PREDICTED: tripartite motif-containing protein 59-like [Macaca mulatta]
gnl|UG|Ssc#S35172884	13	3.74	0	0	10	3.01	"Sus scrofa mRNA, clone:UTR010104D03, expressed in uterus /gb=AK240597 /gi=115546951 /ug=Ssc.10901 /len=1213"	GO:0005929//cilium;GO:0044424//intracellular part	GO:0005488//binding;GO:0019887//protein kinase regulator activity	GO:0048870//cell motility;GO:0019222//regulation of metabolic process;GO:0016310//phosphorylation;GO:0023052//signaling	gi|296475674|gb|DAA17789.1|/7.53705e-104/ropporin-1-like protein [Bos taurus]
gnl|UG|Ssc#S35171817	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:TCH010027A06, expressed in trachea /gb=AK238002 /gi=115548018 /ug=Ssc.47504 /len=2192"	GO:0005856//cytoskeleton;GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0005488//binding	GO:0065008;GO:0031269//pseudopodium assembly;GO:0007265//Ras protein signal transduction	gi|115496254|ref|NP_001068963.1|/4.48856e-114/cdc42 effector protein 1 [Bos taurus]
gnl|UG|Ssc#S46877287	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa helicase, lymphoid-specific (HELLS), mRNA /cds=p(1,2514) /gb=XM_001928970 /gi=311271659 /ug=Ssc.51628 /len=2973"	"GO:0043231//intracellular membrane-bounded organelle;GO:0000775//chromosome, centromeric region"	GO:0017111//nucleoside-triphosphatase activity;GO:0003676//nucleic acid binding;GO:0032559	GO:0048731;GO:0031055//chromatin remodeling at centromere;GO:0006259//DNA metabolic process;GO:0006342//chromatin silencing;GO:0000087//M phase of mitotic cell cycle;GO:0043066//negative regulation of apoptosis;GO:0032943//mononuclear cell proliferation	gi|194041750|ref|XP_001929005.1|/0/PREDICTED: lymphoid-specific helicase [Sus scrofa]
gnl|UG|Ssc#S58308023	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa BTB/POZ domain-containing protein 9-like (LOC100157282), mRNA /cds=p(22,765) /gb=XM_003128375 /gi=311260352 /ug=Ssc.72128 /len=925"	-	-	GO:0009987//cellular process	gi|73972777|ref|XP_538898.2|/1.05463e-162/PREDICTED: similar to BTB/POZ domain containing protein 9 [Canis familiaris]
gnl|UG|Ssc#S26722074	14	4.03	17	4.86	0	0	"AJ958158 KN404_2 Sus scrofa cDNA clone C0007749d19 5', mRNA sequence /clone=C0007749d19 /clone_end=5' /gb=AJ958158 /gi=74374974 /ug=Ssc.40315 /len=559"	GO:0000776//kinetochore;GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding;GO:0017111//nucleoside-triphosphatase activity;GO:0032559	GO:0007067//mitosis	gi|156523172|ref|NP_001096000.1|/9.78823e-21/DNA excision repair protein ERCC-6-like [Bos taurus]
gnl|UG|Ssc#S34499435	76	21.88	59	16.87	103	30.95	"DB811735 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVR010078A08 /clone_end=3' /gb=DB811735 /gi=112768304 /ug=Ssc.80041 /len=933"	-	-	-	gi|297278427|ref|XP_001088540.2|/8.69871e-60/PREDICTED: hypothetical protein LOC700140 [Macaca mulatta]
gnl|UG|Ssc#S58311897	7	2.02	2	0.57	0	0	"PREDICTED: Sus scrofa helicase SRCAP-like (LOC100514159), mRNA /cds=p(1,9684) /gb=XM_003124504 /gi=311251313 /ug=Ssc.2676 /len=9684"	GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0003712//transcription cofactor activity;GO:0004468//lysine N-acetyltransferase activity	"GO:0006355//regulation of transcription, DNA-dependent"	gi|311251314|ref|XP_003124552.1|/0/PREDICTED: LOW QUALITY PROTEIN: helicase SRCAP-like [Sus scrofa]
gnl|UG|Ssc#S22286197	2	0.58	0	0	0	0	"CJ028927 full-length enriched swine cDNA library, adult trachea Sus scrofa cDNA clone TCH01D110089 5', mRNA sequence /clone=TCH01D110089 /clone_end=5' /gb=CJ028927 /gi=54541533 /ug=Ssc.79031 /len=826"	-	-	-	-
gnl|UG|Ssc#S58314834	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa leucine-rich repeat-containing protein 57-like (LOC100513451), partial mRNA /cds=p(1,951) /gb=XM_003121572 /gi=311244904 /ug=Ssc.4594 /len=2636"	-	-	-	"gi|311244905|ref|XP_003121620.1|/1.7701e-160/PREDICTED: leucine-rich repeat-containing protein 57-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58302153	169	48.66	169	48.31	229	68.82	"PREDICTED: Sus scrofa cardiolipin synthase 1 (CRLS1), mRNA /cds=p(137,1045) /gb=XM_003134243 /gi=311274339 /ug=Ssc.3061 /len=1925"	-	-	-	-
gnl|UG|Ssc#S35174115	12	3.45	2	0.57	4	1.2	"Sus scrofa mRNA, clone:OVR010013C03, expressed in ovary /gb=AK234153 /gi=115545720 /ug=Ssc.27231 /len=2146"	GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|296232054|ref|XP_002761409.1|/4.89357e-73/PREDICTED: hypothetical protein LOC100392289 isoform 3 [Callithrix jacchus]
gnl|UG|Ssc#S16763453	0	0	2	0.57	0	0	"827355 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF361048 /gi=34159353 /ug=Ssc.2342 /len=693"	-	-	-	gi|149042642|gb|EDL96279.1|/7.75124e-12/hypothetical LOC302941 [Rattus norvegicus]
gnl|UG|Ssc#S58314495	13	3.74	0	0	12	3.61	"PREDICTED: Sus scrofa receptor-type tyrosine-protein phosphatase delta-like (LOC100517387), mRNA /cds=p(1,1596) /gb=XM_003121908 /gi=311245779 /ug=Ssc.19270 /len=3898"	GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity;GO:0004721//phosphoprotein phosphatase activity	GO:0006470//protein dephosphorylation;GO:0023052//signaling	gi|311245780|ref|XP_003121956.1|/0/PREDICTED: receptor-type tyrosine-protein phosphatase delta-like [Sus scrofa]
gnl|UG|Ssc#S23764240	2	0.58	0	0	2	0.6	"1122015 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN121859 /gi=59816138 /ug=Ssc.83207 /len=836"	-	-	-	gi|311257822|ref|XP_003127295.1|/1.75428e-33/PREDICTED: alpha-soluble NSF attachment protein-like [Sus scrofa]
gnl|UG|Ssc#S58311896	0	0	0	0	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100515257 (LOC100515257), mRNA /cds=p(1,2694) /gb=XM_003124509 /gi=311251315 /ug=Ssc.62414 /len=2702"	-	-	-	gi|311251316|ref|XP_003124557.1|/0/PREDICTED: hypothetical protein LOC100515257 [Sus scrofa]
gnl|UG|Ssc#S58313080	125	35.99	126	36.02	158	47.48	"PREDICTED: Sus scrofa deoxyhypusine synthase-like, transcript variant 3 (LOC100519413), mRNA /cds=p(135,1259) /gb=XM_003123320 /gi=311248898 /ug=Ssc.4713 /len=1389"	GO:0044444//cytoplasmic part	"GO:0005488//binding;GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups"	GO:0046203;GO:0051260//protein homooligomerization;GO:0018205//peptidyl-lysine modification;GO:0010467//gene expression;GO:0008283//cell proliferation	gi|311248899|ref|XP_003123368.1|/0/PREDICTED: deoxyhypusine synthase-like isoform 3 [Sus scrofa]
gnl|UG|Ssc#S20116664	20	5.76	90	25.73	14	4.21	"Sus scrofa diacylglycerol acyltransferase (DGAT), mRNA /cds=p(199,1668) /gb=NM_214051 /gi=47522917 /ug=Ssc.189 /len=1935"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	GO:0008289//lipid binding;GO:0016411//acylglycerol O-acyltransferase activity	GO:0006641//triglyceride metabolic process;GO:0030072//peptide hormone secretion;GO:0034377	gi|47522918|ref|NP_999216.1|/0/diacylglycerol acyltransferase [Sus scrofa]
gnl|UG|Ssc#S58304573	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa replication protein A1, 70kDa (RPA1), mRNA /cds=p(1,1851) /gb=XM_003131822 /gi=311268066 /ug=Ssc.11114 /len=2740"	GO:0016604//nuclear body;GO:0043234//protein complex;GO:0005856//cytoskeleton;GO:0000228//nuclear chromosome;GO:0043073//germ cell nucleus	GO:0043169//cation binding;GO:0043566//structure-specific DNA binding	GO:0006261//DNA-dependent DNA replication;GO:0045003//double-strand break repair via synthesis-dependent strand annealing;GO:0048534;GO:0008283//cell proliferation;GO:0051320;GO:0043009//chordate embryonic development;GO:0007050//cell cycle arrest;GO:0006289//nucleotide-excision repair;GO:0000723//telomere maintenance;GO:0001894//tissue homeostasis	gi|311268067|ref|XP_003131870.1|/0/PREDICTED: replication protein A 70 kDa DNA-binding subunit-like [Sus scrofa]
gnl|UG|Ssc#S55319338	23	6.62	3	0.86	10	3.01	"Sus scrofa mRNA, clone:LVRM10151D10, expressed in liver /gb=AK346354 /gi=288785546 /ug=Ssc.10148 /len=3329"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0004486//methylenetetrahydrofolate dehydrogenase activity;GO:0019238//cyclohydrolase activity;GO:0016879//ligase activity, forming carbon-nitrogen bonds;GO:0032559"	GO:0006575//cellular modified amino acid metabolic process;GO:0000097//sulfur amino acid biosynthetic process;GO:0006766//vitamin metabolic process;GO:0006760//folic acid-containing compound metabolic process;GO:0006163//purine nucleotide metabolic process;GO:0006547//histidine metabolic process	"gi|311261216|ref|XP_001924364.2|/0/PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic [Sus scrofa]"
gnl|UG|Ssc#S35165582	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10127E09, expressed in liver /gb=AK233354 /gi=115554144 /ug=Ssc.1110 /len=2924"	GO:0005626//insoluble fraction;GO:0044444//cytoplasmic part	GO:0000166//nucleotide binding;GO:0031267//small GTPase binding;GO:0001727//lipid kinase activity	GO:0048731;GO:0006668//sphinganine-1-phosphate metabolic process;GO:0008283//cell proliferation;GO:0043066//negative regulation of apoptosis	gi|73948044|ref|XP_541516.2|/0/PREDICTED: similar to sphingosine kinase type 2 isoform [Canis familiaris]
gnl|UG|Ssc#S46877359	5	1.44	0	0	4	1.2	"PREDICTED: Sus scrofa IKAROS family zinc finger 5 (Pegasus) (IKZF5), mRNA /cds=p(1,1260) /gb=XM_001927927 /gi=194041599 /ug=Ssc.95127 /len=1260"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|194041600|ref|XP_001927962.1|/0/PREDICTED: zinc finger protein Pegasus [Sus scrofa]
gnl|UG|Ssc#S55322808	2	0.58	0	0	3	0.9	"Sus scrofa mRNA, clone:TCH010020B06, expressed in trachea /gb=AK350735 /gi=288782064 /ug=Ssc.64301 /len=1513"	GO:0005764//lysosome;GO:0044432//endoplasmic reticulum part	-	GO:0048193//Golgi vesicle transport;GO:0043066//negative regulation of apoptosis	gi|42794771|ref|NP_110437.2|/0/thioredoxin domain-containing protein 5 isoform 1 precursor [Homo sapiens]
gnl|UG|Ssc#S23213251	1123	323.32	990	282.99	942	283.1	"Sus scrofa clone Clu_2981.scr.msk.p1.Contig2, mRNA sequence /gb=AY609757 /gi=52351325 /ug=Ssc.55690 /len=1551"	GO:0031090//organelle membrane;GO:0043005//neuron projection;GO:0043232;GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0060089;GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0008092//cytoskeletal protein binding	"GO:0051704;GO:0001775//cell activation;GO:0048858//cell projection morphogenesis;GO:0019229//regulation of vasoconstriction;GO:0048017//inositol lipid-mediated signaling;GO:0007041//lysosomal transport;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0043065//positive regulation of apoptosis;GO:0014706//striated muscle tissue development;GO:0009207;GO:0016049//cell growth;GO:0031346//positive regulation of cell projection organization;GO:0031960//response to corticosteroid stimulus;GO:0001837//epithelial to mesenchymal transition;GO:0016477//cell migration;GO:0045596//negative regulation of cell differentiation;GO:0010952//positive regulation of peptidase activity;GO:0045597//positive regulation of cell differentiation;GO:0006935//chemotaxis;GO:0007265//Ras protein signal transduction;GO:0010975//regulation of neuron projection development;GO:0030155//regulation of cell adhesion;GO:0007599//hemostasis;GO:0043066//negative regulation of apoptosis;GO:0031589//cell-substrate adhesion;GO:0001101//response to acid;GO:0009968//negative regulation of signal transduction;GO:0006939//smooth muscle contraction;GO:0032233//positive regulation of actin filament bundle assembly;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0030518//steroid hormone receptor signaling pathway;GO:0032413//negative regulation of ion transmembrane transporter activity;GO:0030041//actin filament polymerization;GO:0009746;GO:0006950//response to stress;GO:0006412//translation;GO:0030832//regulation of actin filament length;GO:0031345//negative regulation of cell projection organization;GO:0010769//regulation of cell morphogenesis involved in differentiation;GO:0042345//regulation of NF-kappaB import into nucleus;GO:0006355//regulation of transcription, DNA-dependent"	"gi|55670766|pdb|1X86|B/1.8411e-108/Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA- Associated Rhogef In Complex With Rhoa"
gnl|UG|Ssc#S55327947	6	1.73	0	0	3	0.9	"Sus scrofa cyclin H (CCNH), mRNA /cds=p(1,972) /gb=NM_001166313 /gi=261490771 /ug=Ssc.11994 /len=972"	GO:0005667//transcription factor complex	"GO:0004674//protein serine/threonine kinase activity;GO:0042623//ATPase activity, coupled;GO:0005488//binding"	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006397//mRNA processing;GO:0006352//transcription initiation, DNA-dependent;GO:0051320;GO:0006353//transcription termination, DNA-dependent;GO:0051318//G1 phase;GO:0006289//nucleotide-excision repair;GO:0006354//transcription elongation, DNA-dependent;GO:0045935"	gi|261490772|ref|NP_001159785.1|/2.63639e-175/cyclin-H [Sus scrofa]
gnl|UG|Ssc#S58314313	3	0.86	8	2.29	3	0.9	"PREDICTED: Sus scrofa collagen, type XXVII, alpha 1 (COL27A1), mRNA /cds=p(1,5013) /gb=XM_003122091 /gi=311246246 /ug=Ssc.23816 /len=5948"	GO:0005578//proteinaceous extracellular matrix	-	-	gi|311246247|ref|XP_003122139.1|/0/PREDICTED: collagen alpha-1(XXVII) chain-like [Sus scrofa]
gnl|UG|Ssc#S58306044	17	4.89	12	3.43	22	6.61	"PREDICTED: Sus scrofa syntaxin-6-like (LOC100510921), mRNA /cds=p(249,1016) /gb=XM_003130353 /gi=311264922 /ug=Ssc.11681 /len=2518"	GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane;GO:0030135//coated vesicle;GO:0000139//Golgi membrane;GO:0005768//endosome	GO:0005515//protein binding	GO:0016192//vesicle-mediated transport;GO:0006996//organelle organization;GO:0015031//protein transport	gi|311264923|ref|XP_003130401.1|/2.99011e-117/PREDICTED: syntaxin-6-like [Sus scrofa]
gnl|UG|Ssc#S18354883	2	0.58	0	0	0	0	"899883 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK450356 /gi=40797570 /ug=Ssc.94760 /len=325"	GO:0000785//chromatin;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0034728	gi|301792130|ref|XP_002931030.1|/1.08425e-53/PREDICTED: histone H3.2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S32286925	2	0.58	2	0.57	0	0	"Sus scrofa hexokinase II (HK2) mRNA, complete cds /cds=p(5,2758) /gb=DQ432056 /gi=90820092 /ug=Ssc.42680 /len=3118"	GO:0031966//mitochondrial membrane	GO:0004396//hexokinase activity;GO:0048029//monosaccharide binding;GO:0032559	GO:0006007//glucose catabolic process;GO:0006915//apoptosis;GO:0007589//body fluid secretion;GO:0016310//phosphorylation;GO:0010827//regulation of glucose transport	gi|172072665|ref|NP_001116459.1|/0/hexokinase-2 [Sus scrofa]
gnl|UG|Ssc#S35172806	36	10.36	8	2.29	17	5.11	"Sus scrofa mRNA, clone:AMP010091B11, expressed in alveolar macrophage /gb=AK231084 /gi=115547029 /ug=Ssc.55373 /len=2324"	GO:0016604//nuclear body;GO:0034399//nuclear periphery;GO:0000346//transcription export complex	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding	"GO:0006396//RNA processing;GO:0006915//apoptosis;GO:0023052//signaling;GO:0006406//mRNA export from nucleus;GO:0006354//transcription elongation, DNA-dependent"	gi|149720837|ref|XP_001491940.1|/0/PREDICTED: THO complex 1 [Equus caballus]
gnl|UG|Ssc#S16518213	2	0.58	2	0.57	0	0	"818612 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF181697 /gi=33293473 /ug=Ssc.34784 /len=620"	GO:0005840//ribosome	"GO:0004674//protein serine/threonine kinase activity;GO:0016876//ligase activity, forming aminoacyl-tRNA and related compounds;GO:0042802//identical protein binding;GO:0008135//translation factor activity, nucleic acid binding;GO:0032559"	GO:0031669//cellular response to nutrient levels;GO:0006796//phosphate metabolic process;GO:0006446//regulation of translational initiation;GO:0006984//ER-nucleus signaling pathway;GO:0006464//protein modification process	gi|126278352|ref|XP_001380972.1|/1.68488e-56/PREDICTED: similar to Eukaryotic translation initiation factor 2-alpha kinase 4 (GCN2-like protein) [Monodelphis domestica]
gnl|UG|Ssc#S58309435	22	6.33	72	20.58	7	2.1	"PREDICTED: Sus scrofa katanin p80 WD40-containing subunit B1-like (LOC100514649), mRNA /cds=p(1,2232) /gb=XM_003126964 /gi=311257214 /ug=Ssc.9270 /len=2528"	GO:0030427//site of polarized growth;GO:0043005//neuron projection;GO:0044297//cell body;GO:0005819//spindle;GO:0005813//centrosome	"GO:0046983//protein dimerization activity;GO:0015631//tubulin binding;GO:0042623//ATPase activity, coupled"	GO:0010975//regulation of neuron projection development;GO:0006886//intracellular protein transport;GO:0008219//cell death;GO:0007019//microtubule depolymerization;GO:0007049//cell cycle	gi|311257215|ref|XP_003127012.1|/0/PREDICTED: katanin p80 WD40-containing subunit B1-like [Sus scrofa]
gnl|UG|Ssc#S35170480	73	21.02	111	31.73	33	9.92	"Sus scrofa mRNA, clone:OVRM10075B05, expressed in ovary /gb=AK235381 /gi=115549359 /ug=Ssc.8352 /len=2659"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|149744761|ref|XP_001500351.1|/4.71315e-153/PREDICTED: nucleosome assembly protein 1-like 3 [Equus caballus]
gnl|UG|Ssc#S18382172	5	1.44	8	2.29	12	3.61	"933112 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK462321 /gi=40833602 /ug=Ssc.1097 /len=878"	-	-	-	gi|297281814|ref|XP_002802158.1|/1.90707e-17/PREDICTED: hypothetical protein LOC100425683 [Macaca mulatta]
gnl|UG|Ssc#S40103354	120	34.55	65	18.58	74	22.24	"rfhi4029b_g24.y1 fhi Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW198261 /gi=182557226 /ug=Ssc.79148 /len=659"	-	-	-	-
gnl|UG|Ssc#S46880210	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa NudC domain containing 1 (NUDCD1), mRNA /cds=p(106,2982) /gb=XM_001925125 /gi=311253483 /ug=Ssc.72638 /len=2982"	-	-	-	gi|311253484|ref|XP_001925160.2|/0/PREDICTED: hypothetical protein LOC100155904 [Sus scrofa]
gnl|UG|Ssc#S35168931	33	9.5	52	14.86	39	11.72	"Sus scrofa mRNA, clone:OVRM10126E01, expressed in ovary /gb=AK235926 /gi=115550851 /ug=Ssc.4144 /len=1684"	-	-	-	-
gnl|UG|Ssc#S39887491	13	3.74	13	3.72	3	0.9	"rcmu26_g20.y1 cmu Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV982566 /gi=178502886 /ug=Ssc.65642 /len=590"	-	-	-	-
gnl|UG|Ssc#S23766263	6	1.73	0	0	0	0	"1124237 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN123882 /gi=59818161 /ug=Ssc.29042 /len=791"	-	-	-	-
gnl|UG|Ssc#S40562082	88	25.34	168	48.02	51	15.33	"rton1212b_n6.y1 ton Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW648795 /gi=183064937 /ug=Ssc.63729 /len=254"	-	-	-	-
gnl|UG|Ssc#S58315065	0	0	0	0	0	0	"PREDICTED: Sus scrofa sestrin-1-like (LOC100523876), mRNA /cds=p(1,1383) /gb=XM_003121339 /gi=311244279 /ug=Ssc.7070 /len=2452"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0022402//cell cycle process;GO:0033554//cellular response to stress;GO:0008283//cell proliferation	gi|311244280|ref|XP_003121387.1|/0/PREDICTED: sestrin-1-like [Sus scrofa]
gnl|UG|Ssc#S35170979	3	0.86	0	0	8	2.4	"Sus scrofa mRNA, clone:OVRM10063E02, expressed in ovary /gb=AK235263 /gi=115548860 /ug=Ssc.44826 /len=1710"	GO:0043234//protein complex;GO:0044424//intracellular part	GO:0005083//small GTPase regulator activity	GO:0019222//regulation of metabolic process;GO:0019941//modification-dependent protein catabolic process;GO:0032011//ARF protein signal transduction	gi|114596894|ref|XP_517540.2|/0/PREDICTED: F-box only protein 8 [Pan troglodytes]
gnl|UG|Ssc#S16769730	2	0.58	0	0	2	0.6	"842062 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF367325 /gi=34171764 /ug=Ssc.19064 /len=613"	GO:0031981//nuclear lumen	GO:0043565//sequence-specific DNA binding	"GO:0006351//transcription, DNA-dependent;GO:0034728;GO:0001932//regulation of protein phosphorylation;GO:0051726//regulation of cell cycle;GO:0007165//signal transduction;GO:0016049//cell growth;GO:0006260//DNA replication"	gi|296470691|gb|DAA12806.1|/1.04286e-32/TSPY-like 2-like isoform 1 [Bos taurus]
gnl|UG|Ssc#S46878859	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa zinc transporter ZIP9-like (LOC100158119), mRNA /cds=p(1,924) /gb=XM_001926183 /gi=311261266 /ug=Ssc.71491 /len=924"	GO:0031224//intrinsic to membrane	GO:0008324//cation transmembrane transporter activity	GO:0000041//transition metal ion transport	gi|194038481|ref|XP_001926218.1|/6.8677e-146/PREDICTED: zinc transporter ZIP9-like [Sus scrofa]
gnl|UG|Ssc#S46876890	3	0.86	3	0.86	0	0	"PREDICTED: Sus scrofa TAR RNA binding protein 1, transcript variant 1 (LOC100152410), mRNA /cds=p(1,4887) /gb=XM_001927619 /gi=311271146 /ug=Ssc.18848 /len=5119"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0008168//methyltransferase activity	"GO:0006355//regulation of transcription, DNA-dependent"	gi|311271147|ref|XP_001927654.2|/0/PREDICTED: probable methyltransferase TARBP1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55326114	29	8.35	32	9.15	46	13.82	"Sus scrofa mRNA, clone:OVRM10196B01, expressed in ovary /gb=AK348537 /gi=288778712 /ug=Ssc.54680 /len=1788"	-	-	-	-
gnl|UG|Ssc#S58315128	0	0	0	0	0	0	"PREDICTED: Sus scrofa protein QN1 homolog (LOC100516163), mRNA /cds=p(1,4635) /gb=XM_003121277 /gi=311244126 /ug=Ssc.44192 /len=5958"	GO:0005815//microtubule organizing center;GO:0016020//membrane;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0000087//M phase of mitotic cell cycle	gi|311244127|ref|XP_003121325.1|/0/PREDICTED: protein QN1 homolog [Sus scrofa]
gnl|UG|Ssc#S18550902	103	29.65	60	17.15	116	34.86	"BX919553 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0005.i.08 5prim, mRNA sequence /clone=scan0005.i.08 /clone_end=5' /gb=BX919553 /gi=90236622 /ug=Ssc.1559 /len=859"	-	-	-	"gi|311268145|ref|XP_003131912.1|/7.69489e-32/PREDICTED: transmembrane protein 93-like, partial [Sus scrofa]"
gnl|UG|Ssc#S35174008	11	3.17	0	0	2	0.6	"Sus scrofa mRNA, clone:OVR010034E07, expressed in ovary /gb=AK234260 /gi=115545827 /ug=Ssc.6681 /len=1571"	GO:0043231//intracellular membrane-bounded organelle	"GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0000377;GO:0006405//RNA export from nucleus;GO:0009207	gi|311248993|ref|XP_003123418.1|/0/PREDICTED: ATP-dependent RNA helicase DDX39-like [Sus scrofa]
gnl|UG|Ssc#S58305653	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100511277, transcript variant 1 (LOC100511277), mRNA /cds=p(390,569) /gb=XM_003130740 /gi=311265726 /ug=Ssc.77444 /len=945"	-	-	-	gi|119606678|gb|EAW86272.1|/4.77466e-17/hCG2018327 [Homo sapiens]
gnl|UG|Ssc#S6054346	2	0.58	10	2.86	8	2.4	"MI-P-E3-agu-c-01-1-UM.s1 MI-P-E3 Sus scrofa cDNA clone MI-P-E3-agu-c-01-1-UM 3', mRNA sequence /clone=MI-P-E3-agu-c-01-1-UM /clone_end=3' /gb=BQ598409 /gi=21545135 /ug=Ssc.55965 /len=433"	-	-	-	-
gnl|UG|Ssc#S35164146	11	3.17	15	4.29	2	0.6	"Sus scrofa mRNA, clone:SPL010012B12, expressed in spleen /gb=AK237212 /gi=115555580 /ug=Ssc.20992 /len=1486"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0019787//small conjugating protein ligase activity;GO:0032559	GO:0000209//protein polyubiquitination;GO:0016574//histone ubiquitination;GO:0006513//protein monoubiquitination	gi|149634159|ref|XP_001509467.1|/6.91698e-81/PREDICTED: similar to LOC494742 protein [Ornithorhynchus anatinus]
gnl|UG|Ssc#S35166856	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:THY010106G07, expressed in thymus /gb=AK239477 /gi=115552883 /ug=Ssc.55284 /len=2465"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0000267//cell fraction;GO:0044421//extracellular region part	GO:0003723//RNA binding;GO:0060089;GO:0045236//CXCR chemokine receptor binding;GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0012501//programmed cell death;GO:0023052//signaling;GO:0006418//tRNA aminoacylation for protein translation	"gi|301772980|ref|XP_002921903.1|/0/PREDICTED: tyrosyl-tRNA synthetase, cytoplasmic-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S35169221	45	12.96	35	10	36	10.82	"Sus scrofa mRNA, clone:LVR010048E10, expressed in liver /gb=AK232448 /gi=115550618 /ug=Ssc.55051 /len=1683"	GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	"GO:0016709//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;GO:0016712//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen;GO:0005506//iron ion binding"	GO:0055114//oxidation-reduction process;GO:0044092//negative regulation of molecular function;GO:0009698//phenylpropanoid metabolic process;GO:0006721//terpenoid metabolic process;GO:0090346//cellular organofluorine metabolic process;GO:0017144//drug metabolic process;GO:0009820//alkaloid metabolic process	gi|40316432|dbj|BAD06181.1|/0/cytochrome P-450 [Sus scrofa domestica]
gnl|UG|Ssc#S55263208	70	20.15	22	6.29	47	14.12	"FS644181 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10053C09 5', mRNA sequence /clone=BFLT10053C09 /clone_end=5' /gb=FS644181 /gi=288260355 /ug=Ssc.18172 /len=718"	"GO:0044452;GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0003676//nucleic acid binding;GO:0034062//RNA polymerase activity;GO:0016301//kinase activity	"GO:0006289//nucleotide-excision repair;GO:0000377;GO:0006352//transcription initiation, DNA-dependent;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|281351145|gb|EFB26729.1|/9.94109e-13/hypothetical protein PANDA_002504 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35169115	58	16.7	24	6.86	33	9.92	"Sus scrofa mRNA, clone:OVRM10116D02, expressed in ovary /gb=AK235798 /gi=115550724 /ug=Ssc.51455 /len=2233"	GO:0031981//nuclear lumen;GO:0031252//cell leading edge;GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0004871//signal transducer activity;GO:0042802//identical protein binding;GO:0032559	GO:0000165//MAPKKK cascade;GO:0048193//Golgi vesicle transport;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0006464//protein modification process	gi|297265664|ref|XP_001097198.2|/0/PREDICTED: nuclear receptor-binding protein isoform 7 [Macaca mulatta]
gnl|UG|Ssc#S18359692	20	5.76	2	0.57	14	4.21	"915680 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK455133 /gi=40802347 /ug=Ssc.18357 /len=878"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	"GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0012501//programmed cell death;GO:0000377;GO:0009207;GO:0032501//multicellular organismal process	gi|301785524|ref|XP_002928176.1|/6.71655e-164/PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58307196	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa serine/threonine-protein kinase PLK4-like, transcript variant 1 (LOC100517044), mRNA /cds=p(223,3117) /gb=XM_003129200 /gi=311262573 /ug=Ssc.25215 /len=3661"	GO:0031981//nuclear lumen;GO:0032155;GO:0005813//centrosome	GO:0004672//protein kinase activity;GO:0032559	GO:0060706//cell differentiation involved in embryonic placenta development;GO:0046599//regulation of centriole replication;GO:0006464//protein modification process	gi|311262580|ref|XP_003129251.1|/0/PREDICTED: serine/threonine-protein kinase PLK4-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35168584	34	9.79	36	10.29	16	4.81	"Sus scrofa mRNA, clone:LVR010065A05, expressed in liver /gb=AK232539 /gi=115551106 /ug=Ssc.18377 /len=1842"	GO:0033267//axon part;GO:0044430//cytoskeletal part;GO:0044459//plasma membrane part;GO:0016021//integral to membrane;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0044297//cell body	GO:0005231//excitatory extracellular ligand-gated ion channel activity;GO:0050839//cell adhesion molecule binding;GO:0032559;GO:0016502;GO:0042802//identical protein binding;GO:0046914//transition metal ion binding	GO:0001775//cell activation;GO:0055118//negative regulation of cardiac muscle contraction;GO:0006915//apoptosis;GO:0035587;GO:0048871//multicellular organismal homeostasis;GO:0006814//sodium ion transport;GO:0051899//membrane depolarization;GO:0001508//regulation of action potential;GO:0009967//positive regulation of signal transduction;GO:0010522;GO:0031328//positive regulation of cellular biosynthetic process;GO:0007600//sensory perception;GO:0032305;GO:0010033//response to organic substance;GO:0003300//cardiac muscle hypertrophy;GO:0050880//regulation of blood vessel size;GO:0044271//cellular nitrogen compound biosynthetic process;GO:0043270//positive regulation of ion transport;GO:0051259//protein oligomerization;GO:0006950//response to stress	gi|296213131|ref|XP_002753149.1|/2.43993e-118/PREDICTED: P2X purinoceptor 4-like [Callithrix jacchus]
gnl|UG|Ssc#S46880794	12	3.45	7	2	5	1.5	"PREDICTED: Sus scrofa salvador homolog 1 (Drosophila) (SAV1), mRNA /cds=p(1,1155) /gb=XM_001927720 /gi=311245481 /ug=Ssc.81535 /len=2605"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	GO:0035556//intracellular signal transduction	gi|194034437|ref|XP_001927755.1|/0/PREDICTED: protein salvador homolog 1 [Sus scrofa]
gnl|UG|Ssc#S55327294	45	12.96	17	4.86	31	9.32	"Sus scrofa mRNA, clone:OVR010015G04, expressed in ovary /gb=AK347355 /gi=288576762 /ug=Ssc.26371 /len=1593"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0008168//methyltransferase activity	GO:0018011;GO:0035570;GO:0035568;GO:0000226//microtubule cytoskeleton organization	gi|311246609|ref|XP_003122265.1|/2.48091e-124/PREDICTED: LOW QUALITY PROTEIN: alpha N-terminal protein methyltransferase 1A-like [Sus scrofa]
gnl|UG|Ssc#S58307760	0	0	0	0	0	0	"PREDICTED: Sus scrofa cytochrome c oxidase assembly protein COX16 homolog, mitochondrial-like (LOC100525232), mRNA /cds=p(389,709) /gb=XM_003128623 /gi=311261275 /ug=Ssc.83583 /len=970"	-	-	-	-
gnl|UG|Ssc#S58311851	42	12.09	20	5.72	53	15.93	"PREDICTED: Sus scrofa DNA-directed RNA polymerase III subunit RPC5-like (LOC100523894), mRNA /cds=p(1,2583) /gb=XM_003124552 /gi=311251407 /ug=Ssc.52020 /len=3735"	GO:0031981//nuclear lumen	GO:0034062//RNA polymerase activity	"GO:0006952//defense response;GO:0006354//transcription elongation, DNA-dependent;GO:0051707//response to other organism;GO:0006353//transcription termination, DNA-dependent"	gi|311251408|ref|XP_003124600.1|/0/PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Sus scrofa]
gnl|UG|Ssc#S58307347	9	2.59	7	2	3	0.9	"PREDICTED: Sus scrofa ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA /cds=p(1,3066) /gb=XM_003129053 /gi=311262267 /ug=Ssc.88316 /len=3066"	GO:0044424//intracellular part	GO:0008641//small protein activating enzyme activity;GO:0032559	GO:0019941//modification-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation	gi|311262268|ref|XP_003129101.1|/0/PREDICTED: ubiquitin-like modifier-activating enzyme 6-like [Sus scrofa]
gnl|UG|Ssc#S46878713	0	0	0	0	0	0	"PREDICTED: Sus scrofa egl nine homolog 3-like (LOC100152368), mRNA /cds=p(228,947) /gb=XM_001928507 /gi=311260893 /ug=Ssc.40300 /len=1276"	GO:0043231//intracellular membrane-bounded organelle	"GO:0046914//transition metal ion binding;GO:0019842//vitamin binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	GO:0008283//cell proliferation;GO:0006950//response to stress;GO:0012501//programmed cell death;GO:0008152//metabolic process	gi|114652568|ref|XP_509896.2|/7.65361e-155/PREDICTED: egl nine homolog 3 [Pan troglodytes]
gnl|UG|Ssc#S58314484	6	1.73	17	4.86	2	0.6	"PREDICTED: Sus scrofa hsp90 co-chaperone Cdc37-like 1-like (LOC100522234), mRNA /cds=p(182,1195) /gb=XM_003121918 /gi=311245811 /ug=Ssc.18220 /len=2788"	GO:0044424//intracellular part	-	-	gi|311245812|ref|XP_003121966.1|/5.8245e-178/PREDICTED: hsp90 co-chaperone Cdc37-like 1-like [Sus scrofa]
gnl|UG|Ssc#S39803911	2	0.58	0	0	5	1.5	"rcbe23_e13.y1 cbe Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV899189 /gi=178499938 /ug=Ssc.61310 /len=663"	-	-	-	-
gnl|UG|Ssc#S58310999	11	3.17	0	0	9	2.7	"PREDICTED: Sus scrofa peroxidasin homolog (LOC100515892), mRNA /cds=p(1,2673) /gb=XM_003125404 /gi=311253156 /ug=Ssc.2027 /len=2901"	GO:0043231//intracellular membrane-bounded organelle;GO:0031012//extracellular matrix	GO:0005126//cytokine receptor binding;GO:0016209//antioxidant activity;GO:0005198//structural molecule activity;GO:0003824//catalytic activity;GO:0005506//iron ion binding	GO:0043062//extracellular structure organization;GO:0001959//regulation of cytokine-mediated signaling pathway;GO:0002376//immune system process;GO:0042743//hydrogen peroxide metabolic process;GO:0006950//response to stress	gi|311253157|ref|XP_003125452.1|/0/PREDICTED: peroxidasin homolog [Sus scrofa]
gnl|UG|Ssc#S55834708	19	5.47	19	5.43	6	1.8	"Sus scrofa immunity-related GTPase family protein cinema (IRGC) mRNA, complete cds /cds=p(124,1518) /gb=EU703776 /gi=197318122 /ug=Ssc.34283 /len=1559"	GO:0044464//cell part	GO:0016787//hydrolase activity;GO:0032561	-	gi|298231135|ref|NP_001177218.1|/0/interferon-inducible GTPase 5 [Sus scrofa]
gnl|UG|Ssc#S58313053	0	0	0	0	0	0	"PREDICTED: Sus scrofa methylthioribose-1-phosphate isomerase-like (LOC100525858), mRNA /cds=p(26,1102) /gb=XM_003123346 /gi=311248953 /ug=Ssc.49913 /len=1661"	GO:0043231//intracellular membrane-bounded organelle	"GO:0005515//protein binding;GO:0016861//intramolecular oxidoreductase activity, interconverting aldoses and ketoses"	GO:0043102;GO:0000097//sulfur amino acid biosynthetic process	gi|311248954|ref|XP_003123394.1|/2.41687e-170/PREDICTED: methylthioribose-1-phosphate isomerase-like [Sus scrofa]
gnl|UG|Ssc#S35171323	10	2.88	8	2.29	23	6.91	"Sus scrofa mRNA, clone:OVRM10052D01, expressed in ovary /gb=AK235133 /gi=115548516 /ug=Ssc.13269 /len=2082"	GO:0031224//intrinsic to membrane;GO:0044459//plasma membrane part;GO:0044424//intracellular part	GO:0019900//kinase binding;GO:0004871//signal transducer activity;GO:0046983//protein dimerization activity	GO:0006631//fatty acid metabolic process;GO:0016049//cell growth;GO:0019221//cytokine-mediated signaling pathway;GO:0010740//positive regulation of intracellular protein kinase cascade	gi|55742864|ref|NP_001007194.1|/0/adiponectin receptor protein 1 [Sus scrofa]
gnl|UG|Ssc#S35165411	4	1.15	18	5.15	11	3.31	"Sus scrofa mRNA, clone:UTR010032B04, expressed in uterus /gb=AK240110 /gi=115554315 /ug=Ssc.83503 /len=2182"	-	-	-	-
gnl|UG|Ssc#S50084297	0	0	0	0	2	0.6	"Sus scrofa lipin 2 (Lpin2) mRNA, complete cds /cds=p(12,2687) /gb=EU344905 /gi=169248249 /ug=Ssc.19807 /len=2985"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0031090//organelle membrane	GO:0003712//transcription cofactor activity;GO:0016791//phosphatase activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0032787//monocarboxylic acid metabolic process;GO:0006641//triglyceride metabolic process	gi|169248250|gb|ACA51851.1|/0/lipin 2 [Sus scrofa]
gnl|UG|Ssc#S58309587	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa zinc finger CCHC domain-containing protein 14-like (LOC100512105), mRNA /cds=p(1,3087) /gb=XM_003126814 /gi=311256902 /ug=Ssc.9055 /len=3087"	-	GO:0005488//binding	-	gi|311256903|ref|XP_003126862.1|/0/PREDICTED: zinc finger CCHC domain-containing protein 14-like [Sus scrofa]
gnl|UG|Ssc#S55318593	2	0.58	2	0.57	4	1.2	"Sus scrofa mRNA, clone:MLN010071G02, expressed in mesenteric lymph nodes /gb=AK346899 /gi=288786291 /ug=Ssc.31684 /len=938"	GO:0016020//membrane	-	-	gi|116004187|ref|NP_001070456.1|/2.74334e-49/transmembrane protein 60 [Bos taurus]
gnl|UG|Ssc#S35170365	301	86.66	179	51.17	371	111.5	"Sus scrofa mRNA, clone:OVRM10087D03, expressed in ovary /gb=AK235496 /gi=115549474 /ug=Ssc.2036 /len=1841"	GO:0034399//nuclear periphery;GO:0043189//H4/H2A histone acetyltransferase complex;GO:0035097//histone methyltransferase complex	GO:0005515//protein binding;GO:0032559;GO:0003677//DNA binding;GO:0003678//DNA helicase activity	"GO:0006351//transcription, DNA-dependent;GO:0006259//DNA metabolic process;GO:0009207;GO:0050789//regulation of biological process;GO:0016573//histone acetylation"	gi|296477451|gb|DAA19566.1|/0/ruvB-like 2 [Bos taurus]
gnl|UG|Ssc#S23755536	2	0.58	2	0.57	0	0	"1112404 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN113155 /gi=59806888 /ug=Ssc.83510 /len=783"	-	-	-	-
gnl|UG|Ssc#S20936451	3	0.86	2	0.57	0	0	"AJ648174 CSEQRAN19 Sus scrofa cDNA clone C0003263_N18, mRNA sequence /clone=C0003263_N18 /gb=AJ648174 /gi=49325019 /ug=Ssc.85547 /len=461"	-	-	-	gi|157820909|ref|NP_001101044.1|/8.94036e-72/zinc finger HIT domain-containing protein 2 [Rattus norvegicus]
gnl|UG|Ssc#S20939271	3	0.86	0	0	0	0	"AJ650994 CSEQRAN19 Sus scrofa cDNA clone C0003276_O17, mRNA sequence /clone=C0003276_O17 /gb=AJ650994 /gi=49327839 /ug=Ssc.74032 /len=522"	GO:0019866//organelle inner membrane;GO:0031966//mitochondrial membrane	GO:0046914//transition metal ion binding;GO:0048037//cofactor binding;GO:0003824//catalytic activity	GO:0008152//metabolic process	"gi|19705543|ref|NP_599237.1|/1.80431e-97/MOSC domain-containing protein 2, mitochondrial precursor [Rattus norvegicus]"
gnl|UG|Ssc#S55321642	2	0.58	2	0.57	0	0	"Sus scrofa mRNA, clone:ITT010044D03, expressed in small intestine /gb=AK345045 /gi=288783230 /ug=Ssc.83414 /len=1036"	-	-	-	-
gnl|UG|Ssc#S35166092	7	2.02	29	8.29	3	0.9	"Sus scrofa mRNA, clone:UTR010001G08, expressed in uterus /gb=AK239833 /gi=115553646 /ug=Ssc.19550 /len=1351"	GO:0031981//nuclear lumen	-	-	gi|77736295|ref|NP_001029847.1|/2.45141e-82/transmembrane and ubiquitin-like domain-containing protein 1 [Bos taurus]
gnl|UG|Ssc#S58302996	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa UDP-glucose:glycoprotein glucosyltransferase 1-like (LOC100517430), mRNA /cds=p(1,5559) /gb=XM_003133403 /gi=311272443 /ug=Ssc.29238 /len=5959"	GO:0044432//endoplasmic reticulum part	GO:0035251//UDP-glucosyltransferase activity;GO:0005515//protein binding	GO:0006458//'de novo' protein folding;GO:0006487//protein N-linked glycosylation	gi|311272444|ref|XP_003133451.1|/0/PREDICTED: UDP-glucose:glycoprotein glucosyltransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S55240825	14	4.03	10	2.86	18	5.41	"FS654827 full-length enriched swine cDNA library, adult back fat Sus scrofa cDNA clone BKFL10095E01 5', mRNA sequence /clone=BKFL10095E01 /clone_end=5' /gb=FS654827 /gi=288238272 /ug=Ssc.77612 /len=204"	-	-	-	-
gnl|UG|Ssc#S40411394	0	0	2	0.57	0	0	"rplac_3758.y1 pla Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW506001 /gi=183055438 /ug=Ssc.92278 /len=316"	GO:0000785//chromatin;GO:0070603//SWI/SNF-type complex;GO:0000794//condensed nuclear chromosome;GO:0044444//cytoplasmic part	"GO:0003916//DNA topoisomerase activity;GO:0019901//protein kinase binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0032559;GO:0042623//ATPase activity, coupled"	"GO:0006351//transcription, DNA-dependent;GO:0007131//reciprocal meiotic recombination;GO:0071780//mitotic cell cycle G2/M transition checkpoint;GO:0007059//chromosome segregation;GO:0006260//DNA replication"	gi|301782147|ref|XP_002926491.1|/1.33253e-56/PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46880664	16	4.61	6	1.72	11	3.31	"PREDICTED: Sus scrofa LysM, putative peptidoglycan-binding, domain containing 2 (LYSMD2), mRNA /cds=p(1,666) /gb=XM_001925735 /gi=194034717 /ug=Ssc.62894 /len=1182"	-	-	-	gi|194034718|ref|XP_001925770.1|/5.57244e-96/PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 2 [Sus scrofa]
gnl|UG|Ssc#S35169423	113	32.53	117	33.44	149	44.78	"Sus scrofa mRNA, clone:THY010016G06, expressed in thymus /gb=AK238681 /gi=115550416 /ug=Ssc.20341 /len=1571"	GO:0031519//PcG protein complex;GO:0000803	GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0008276//protein methyltransferase activity	"GO:0006479//protein methylation;GO:0040029//regulation of gene expression, epigenetic;GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|2088637|gb|AAC53302.1|/0/embryonic ectoderm development protein [Mus musculus]
gnl|UG|Ssc#S40003717	3	0.86	2	0.57	0	0	"rece14c_o21.y1 ece Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW098626 /gi=181267407 /ug=Ssc.61378 /len=632"	GO:0043231//intracellular membrane-bounded organelle;GO:0031234//extrinsic to internal side of plasma membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0005488//binding;GO:0060089	GO:0048731;GO:0001775//cell activation;GO:0007267//cell-cell signaling;GO:0033762//response to glucagon stimulus;GO:0009207;GO:0015980//energy derivation by oxidation of organic compounds;GO:0007599//hemostasis;GO:0007166//cell surface receptor linked signaling pathway	gi|297277428|ref|XP_001112438.2|/8.8503e-30/PREDICTED: hypothetical protein LOC716626 [Macaca mulatta]
gnl|UG|Ssc#S21547543	10	2.88	11	3.14	6	1.8	"UMC-pputal6-004-f05 Peripubertal ovary pputal Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO956561 /gi=51333624 /ug=Ssc.86282 /len=402"	-	-	-	-
gnl|UG|Ssc#S55323575	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:AMP010078F03, expressed in alveolar macrophages /gb=AK343906 /gi=288781297 /ug=Ssc.16620 /len=2169"	-	-	-	-
gnl|UG|Ssc#S29982683	4	1.15	2	0.57	0	0	"PDUts2010E12 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2010E12 5' similar to homologue to gb|AC012014.20| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Cancer Institute Human BAC Library) complete sequence, mRNA sequence /clone=PDUts2010E12 /clone_end=5' /gb=CX057159 /gi=84133301 /ug=Ssc.12655 /len=688"	-	-	-	-
gnl|UG|Ssc#S18386430	242	69.67	130	37.16	213	64.01	"937759 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK466543 /gi=40837820 /ug=Ssc.84797 /len=884"	-	-	-	-
gnl|UG|Ssc#S58314373	10	2.88	0	0	10	3.01	"PREDICTED: Sus scrofa nuclear cap-binding protein subunit 1-like (LOC100524783), mRNA /cds=p(1,3039) /gb=XM_003122029 /gi=311246086 /ug=Ssc.31572 /len=3471"	GO:0031981//nuclear lumen;GO:0034518;GO:0044444//cytoplasmic part	GO:0003723//RNA binding	"GO:0006413//translational initiation;GO:0016458//gene silencing;GO:0000956//nuclear-transcribed mRNA catabolic process;GO:0006353//transcription termination, DNA-dependent;GO:0031124//mRNA 3'-end processing;GO:0000398//nuclear mRNA splicing, via spliceosome;GO:0006354//transcription elongation, DNA-dependent;GO:0045935;GO:0006405//RNA export from nucleus"	gi|311246087|ref|XP_003122077.1|/0/PREDICTED: nuclear cap-binding protein subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S58314000	0	0	0	0	0	0	"PREDICTED: Sus scrofa ras association domain-containing protein 7-like (LOC100512884), mRNA /cds=p(1,1431) /gb=XM_003122393 /gi=311247025 /ug=Ssc.23051 /len=1507"	-	GO:0005488//binding	GO:0009987//cellular process	gi|311247026|ref|XP_003122441.1|/0/PREDICTED: LOW QUALITY PROTEIN: ras association domain-containing protein 7-like [Sus scrofa]
gnl|UG|Ssc#S58312754	0	0	0	0	6	1.8	"PREDICTED: Sus scrofa mastermind-like protein 1-like (LOC100520231), mRNA /cds=p(1,3402) /gb=XM_003123646 /gi=311249561 /ug=Ssc.95067 /len=3402"	GO:0016604//nuclear body	GO:0003712//transcription cofactor activity;GO:0019900//kinase binding;GO:0003823//antigen binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007166//cell surface receptor linked signaling pathway	gi|311249562|ref|XP_003123694.1|/0/PREDICTED: LOW QUALITY PROTEIN: mastermind-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S6057388	20	5.76	15	4.29	33	9.92	"MI-P-H3-aat-g-03-1-UM.s1 MI-P-H3 Sus scrofa cDNA clone MI-P-H3-aat-g-03-1-UM 3', mRNA sequence /clone=MI-P-H3-aat-g-03-1-UM /clone_end=3' /gb=BF702490 /gi=11987892 /ug=Ssc.81481 /len=673"	-	-	-	-
gnl|UG|Ssc#S20936501	185	53.26	66	18.87	277	83.25	"AJ648224 CSEQRAN19 Sus scrofa cDNA clone C0003264_A03, mRNA sequence /clone=C0003264_A03 /gb=AJ648224 /gi=49325069 /ug=Ssc.85551 /len=530"	GO:0044444//cytoplasmic part	GO:0016831//carboxy-lyase activity	GO:0006596//polyamine biosynthetic process;GO:0008283//cell proliferation;GO:0051707//response to other organism;GO:0048513//organ development	gi|205806|gb|AAA66286.1|/5.74014e-94/ornithine decarboxylase [Rattus norvegicus]
gnl|UG|Ssc#S46878947	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa BTB (POZ) domain containing 7 (BTBD7), mRNA /cds=p(80,3460) /gb=XM_001927104 /gi=194038301 /ug=Ssc.51086 /len=3460"	-	-	-	gi|194038302|ref|XP_001927139.1|/0/PREDICTED: BTB/POZ domain-containing protein 7 [Sus scrofa]
gnl|UG|Ssc#S46880792	7	2.02	8	2.29	4	1.2	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase TRIM9-like (LOC100153738), mRNA /cds=p(179,2311) /gb=XM_001928211 /gi=311245488 /ug=Ssc.77251 /len=2311"	GO:0043005//neuron projection;GO:0043232;GO:0030136//clathrin-coated vesicle;GO:0044459//plasma membrane part	GO:0046914//transition metal ion binding;GO:0042802//identical protein binding;GO:0019787//small conjugating protein ligase activity	GO:0006511//ubiquitin-dependent protein catabolic process;GO:0031333//negative regulation of protein complex assembly;GO:0032446//protein modification by small protein conjugation;GO:0017158//regulation of calcium ion-dependent exocytosis	gi|297695081|ref|XP_002824781.1|/0/PREDICTED: tripartite motif-containing protein 9-like [Pongo abelii]
gnl|UG|Ssc#S58307168	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa protein transport protein Sec24D-like (LOC100524694), mRNA /cds=p(13,597) /gb=XM_003129226 /gi=311262630 /ug=Ssc.58733 /len=1296"	GO:0012507//ER to Golgi transport vesicle membrane	GO:0046914//transition metal ion binding	GO:0006901//vesicle coating;GO:0048193//Golgi vesicle transport;GO:0015031//protein transport;GO:0006487//protein N-linked glycosylation	gi|74002410|ref|XP_535702.2|/6.74996e-106/PREDICTED: similar to Protein transport protein Sec24D (SEC24-related protein D) [Canis familiaris]
gnl|UG|Ssc#S55325670	14	4.03	12	3.43	19	5.71	"Sus scrofa mRNA, clone:PBL010084E06, expressed in peripheral blood mononuclear cells /gb=AK348981 /gi=288779156 /ug=Ssc.41484 /len=3174"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003824//catalytic activity	"GO:0001525//angiogenesis;GO:0006259//DNA metabolic process;GO:0006355//regulation of transcription, DNA-dependent;GO:0007219//Notch signaling pathway;GO:0007399//nervous system development;GO:0048513//organ development;GO:0009855//determination of bilateral symmetry;GO:0009952//anterior/posterior pattern formation"	gi|301778341|ref|XP_002924592.1|/1.07769e-167/PREDICTED: recombining binding protein suppressor of hairless-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35172992	2	0.58	0	0	3	0.9	"Sus scrofa mRNA, clone:SPL010080H11, expressed in spleen /gb=AK237689 /gi=115546843 /ug=Ssc.21827 /len=1933"	GO:0031461//cullin-RING ubiquitin ligase complex	GO:0005488//binding;GO:0019787//small conjugating protein ligase activity	GO:0031396//regulation of protein ubiquitination	gi|311246571|ref|XP_003122273.1|/0/PREDICTED: protein zer-1 homolog [Sus scrofa]
gnl|UG|Ssc#S58304695	74	21.3	42	12.01	84	25.24	"PREDICTED: Sus scrofa gametogenetin binding protein 2 (GGNBP2), mRNA /cds=p(201,2291) /gb=XM_003131703 /gi=311267811 /ug=Ssc.25643 /len=2756"	GO:0031410//cytoplasmic vesicle;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0048232//male gamete generation;GO:0048869	gi|311267812|ref|XP_003131751.1|/0/PREDICTED: gametogenetin-binding protein 2-like [Sus scrofa]
gnl|UG|Ssc#S46878647	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa abhydrolase domain containing 4 (ABHD4), mRNA /cds=p(16,1086) /gb=XM_001927577 /gi=194038924 /ug=Ssc.19571 /len=2413"	-	GO:0003824//catalytic activity	GO:0006629//lipid metabolic process	gi|194038925|ref|XP_001927612.1|/0/PREDICTED: abhydrolase domain-containing protein 4 [Sus scrofa]
gnl|UG|Ssc#S58304709	0	0	0	0	9	2.7	"PREDICTED: Sus scrofa RING finger and transmembrane domain-containing protein 1-like (LOC100524826), mRNA /cds=p(1,2133) /gb=XM_003131689 /gi=311267782 /ug=Ssc.24331 /len=2875"	GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding	-	gi|311267783|ref|XP_003131737.1|/0/PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58309496	7	2.02	0	0	0	0	"PREDICTED: Sus scrofa pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like (LOC100518664), mRNA /cds=p(1,2478) /gb=XM_003126913 /gi=311257088 /ug=Ssc.34064 /len=2848"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	"GO:0042623//ATPase activity, coupled;GO:0032559"	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	gi|311257089|ref|XP_003126961.1|/0/PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Sus scrofa]
gnl|UG|Ssc#S31109244	3	0.86	0	0	0	0	"1518950 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY413082 /gi=87214385 /ug=Ssc.55687 /len=756"	GO:0043005//neuron projection;GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0019899//enzyme binding	GO:0006984//ER-nucleus signaling pathway;GO:0006457//protein folding;GO:0006874//cellular calcium ion homeostasis;GO:0033500//carbohydrate homeostasis;GO:0043270//positive regulation of ion transport;GO:0003014//renal system process;GO:0050953//sensory perception of light stimulus;GO:0010604;GO:0007635//chemosensory behavior;GO:0048513//organ development;GO:0050954//sensory perception of mechanical stimulus;GO:0043066//negative regulation of apoptosis	gi|149703200|ref|XP_001499848.1|/3.67247e-69/PREDICTED: similar to wolframin [Equus caballus]
gnl|UG|Ssc#S20116709	4	1.15	0	0	0	0	"Sus scrofa transferrin receptor (p90, CD71) (TFRC), mRNA /cds=p(36,2342) /gb=NM_214001 /gi=47522827 /ug=Ssc.38 /len=2413"	GO:0016021//integral to membrane;GO:0012505//endomembrane system;GO:0048770	GO:0031072//heat shock protein binding;GO:0004888//transmembrane receptor activity;GO:0016787//hydrolase activity	GO:0016192//vesicle-mediated transport;GO:0010038//response to metal ion;GO:0002526//acute inflammatory response;GO:0051704;GO:0006875//cellular metal ion homeostasis;GO:0019538//protein metabolic process;GO:0033189//response to vitamin A;GO:0032502//developmental process;GO:0015031//protein transport	gi|47522828|ref|NP_999166.1|/0/transferrin receptor protein 1 [Sus scrofa]
gnl|UG|Ssc#S46876676	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa serine dehydratase (SDS), mRNA /cds=p(160,1146) /gb=XM_001928302 /gi=311270694 /ug=Ssc.79983 /len=1519"	-	-	-	gi|194043013|ref|XP_001928337.1|/5.85706e-160/PREDICTED: l-serine dehydratase/L-threonine deaminase [Sus scrofa]
gnl|UG|Ssc#S55324371	20	5.76	25	7.15	14	4.21	"Sus scrofa mRNA, clone:ADR010078D08, expressed in adrenal gland /gb=AK343487 /gi=288780501 /ug=Ssc.76044 /len=1583"	-	-	-	gi|73999407|ref|XP_536558.2|/1.59364e-19/PREDICTED: similar to reverse transcriptase [Canis familiaris]
gnl|UG|Ssc#S58305941	7	2.02	2	0.57	3	0.9	"PREDICTED: Sus scrofa MAP kinase-activated protein kinase 2-like (LOC100521986), mRNA /cds=p(1,1242) /gb=XM_003130462 /gi=311265133 /ug=Ssc.2217 /len=1668"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0060089;GO:0004672//protein kinase activity;GO:0032559	GO:0043488//regulation of mRNA stability;GO:0006796//phosphate metabolic process;GO:0009058//biosynthetic process;GO:0002224//toll-like receptor signaling pathway;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007264//small GTPase mediated signal transduction;GO:0006464//protein modification process;GO:0006691//leukotriene metabolic process;GO:0000165//MAPKKK cascade	gi|311265134|ref|XP_003130510.1|/0/PREDICTED: MAP kinase-activated protein kinase 2-like [Sus scrofa]
gnl|UG|Ssc#S58312709	74	21.3	46	13.15	38	11.42	"PREDICTED: Sus scrofa ankyrin repeat family A protein 2-like (LOC100515129), mRNA /cds=p(194,1135) /gb=XM_003123692 /gi=311249653 /ug=Ssc.9574 /len=1643"	GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle;GO:0043232;GO:0005626//insoluble fraction	GO:0071813//lipoprotein particle binding;GO:0019899//enzyme binding	-	gi|311249654|ref|XP_003123740.1|/1.06687e-178/PREDICTED: ankyrin repeat family A protein 2-like [Sus scrofa]
gnl|UG|Ssc#S50371661	3	0.86	0	0	7	2.1	"Sus scrofa ADAM metallopeptidase with thrombospondin type 1 motif, 1 (ADAMTS1), mRNA /cds=p(238,3081) /gb=NM_001144843 /gi=221325627 /ug=Ssc.12365 /len=4011"	GO:0031982//vesicle;GO:0005578//proteinaceous extracellular matrix	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005539//glycosaminoglycan binding	GO:0022602//ovulation cycle process;GO:0001525//angiogenesis;GO:0019538//protein metabolic process;GO:0060343;GO:0008283//cell proliferation;GO:0007166//cell surface receptor linked signaling pathway	gi|221325628|ref|NP_001138315.1|/0/A disintegrin and metalloproteinase with thrombospondin motifs 1 [Sus scrofa]
gnl|UG|Ssc#S46877291	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1-like (LOC100157745), mRNA /cds=p(1,5571) /gb=XM_001928824 /gi=311271655 /ug=Ssc.24313 /len=5739"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0012505//endomembrane system;GO:0044444//cytoplasmic part	GO:0004871//signal transducer activity;GO:0004629//phospholipase C activity;GO:0030695//GTPase regulator activity;GO:0046872//metal ion binding;GO:0031267//small GTPase binding	GO:0006937//regulation of muscle contraction;GO:0051056//regulation of small GTPase mediated signal transduction;GO:0048513//organ development;GO:0046339//diacylglycerol metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0051480//cytosolic calcium ion homeostasis;GO:0006996//organelle organization;GO:0019637//organophosphate metabolic process;GO:0001932//regulation of protein phosphorylation;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0016049//cell growth;GO:0019932//second-messenger-mediated signaling;GO:0000165//MAPKKK cascade	"gi|311271656|ref|XP_001928859.2|/0/PREDICTED: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase epsilon-1-like [Sus scrofa]"
gnl|UG|Ssc#S55323504	3	0.86	2	0.57	3	0.9	"Sus scrofa mRNA, clone:AMP010096C08, expressed in alveolar macrophages /gb=AK343977 /gi=288781368 /ug=Ssc.83387 /len=1543"	-	-	-	-
gnl|UG|Ssc#S18552284	6	1.73	9	2.57	6	1.8	"BX920935 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0004.n.22 5prim, mRNA sequence /clone=scan0004.n.22 /clone_end=5' /gb=BX920935 /gi=90228515 /ug=Ssc.11430 /len=885"	GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003711//transcription elongation regulator activity;GO:0043566//structure-specific DNA binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|194207909|ref|XP_001501421.2|/6.68625e-127/PREDICTED: similar to Transcription elongation factor B polypeptide 3 (RNA polymerase II transcription factor SIII subunit A1) (SIII p110) (Elongin-A) (EloA) (Elongin 110 kDa subunit) [Equus caballus]
gnl|UG|Ssc#S55322680	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:DCI010037H06, expressed in dendritic cells (immature) /gb=AK344403 /gi=288782192 /ug=Ssc.55752 /len=1968"	GO:0000323//lytic vacuole;GO:0016020//membrane	GO:0005488//binding;GO:0004180//carboxypeptidase activity	GO:0007599//hemostasis;GO:0072376	gi|311263609|ref|XP_003129755.1|/0/PREDICTED: lysosomal Pro-X carboxypeptidase-like [Sus scrofa]
gnl|UG|Ssc#S55326868	20	5.76	5	1.43	14	4.21	"Sus scrofa mRNA, clone:OVR010097C05, expressed in ovary /gb=AK347783 /gi=288777958 /ug=Ssc.56090 /len=1950"	GO:0043234//protein complex;GO:0000790//nuclear chromatin;GO:0044459//plasma membrane part;GO:0005813//centrosome	GO:0005515//protein binding;GO:0032559	GO:0051084//'de novo' posttranslational protein folding;GO:0043623//cellular protein complex assembly;GO:0007281//germ cell development	gi|194033403|ref|XP_001928240.1|/0/PREDICTED: t-complex protein 1 subunit alpha-like [Sus scrofa]
gnl|UG|Ssc#S19550534	2	0.58	0	0	0	0	"998321 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN166642 /gi=46181072 /ug=Ssc.9772 /len=833"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|76662501|ref|XP_614755.2|/3.19632e-128/PREDICTED: hypothetical protein isoform 1 [Bos taurus]
gnl|UG|Ssc#S35164078	17	4.89	17	4.86	14	4.21	"Sus scrofa mRNA, clone:SPL010020D12, expressed in spleen /gb=AK237281 /gi=115555648 /ug=Ssc.1903 /len=1811"	-	GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	"gi|119602224|gb|EAW81818.1|/0/MAP/microtubule affinity-regulating kinase 3, isoform CRA_g [Homo sapiens]"
gnl|UG|Ssc#S46880073	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa Rho guanine nucleotide exchange factor (GEF) 11 (ARHGEF11), mRNA /cds=p(1,4659) /gb=XM_001927715 /gi=311254087 /ug=Ssc.28425 /len=5790"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005102//receptor binding;GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0060089;GO:0008047//enzyme activator activity	"GO:0007010//cytoskeleton organization;GO:0007266//Rho protein signal transduction;GO:0007163//establishment or maintenance of cell polarity;GO:0006355//regulation of transcription, DNA-dependent;GO:0006936//muscle contraction;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006917//induction of apoptosis;GO:0009966//regulation of signal transduction;GO:0006935//chemotaxis;GO:0016049//cell growth"	gi|311254088|ref|XP_001927750.2|/0/PREDICTED: rho guanine nucleotide exchange factor 11 [Sus scrofa]
gnl|UG|Ssc#S46877265	3	0.86	2	0.57	3	0.9	"PREDICTED: Sus scrofa phosphoglycerate mutase 1-like, transcript variant 2 (LOC100154776), mRNA /cds=p(126,896) /gb=XM_001928755 /gi=311271698 /ug=Ssc.55891 /len=937"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0019900//kinase binding;GO:0016868//intramolecular transferase activity, phosphotransferases;GO:0034416//bisphosphoglycerate phosphatase activity"	GO:0006796//phosphate metabolic process;GO:0006096//glycolysis;GO:0006140	gi|194041795|ref|XP_001928790.1|/4.84697e-139/PREDICTED: phosphoglycerate mutase 1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S46880415	83	23.9	89	25.44	52	15.63	"PREDICTED: Sus scrofa trophoblast glycoprotein-like (LOC100158028), mRNA /cds=p(93,1352) /gb=XM_001927441 /gi=311244416 /ug=Ssc.22413 /len=2053"	GO:0016021//integral to membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0009987//cellular process	gi|194035244|ref|XP_001927476.1|/0/PREDICTED: trophoblast glycoprotein-like [Sus scrofa]
gnl|UG|Ssc#S20937584	7	2.02	5	1.43	9	2.7	"AJ649307 CSEQRAN19 Sus scrofa cDNA clone C0003272_B24, mRNA sequence /clone=C0003272_B24 /gb=AJ649307 /gi=49326152 /ug=Ssc.74146 /len=549"	GO:0022624	GO:0061135;GO:0005488//binding	"GO:0010952//positive regulation of peptidase activity;GO:0019882//antigen processing and presentation;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|61098214|ref|NP_058960.2|/3.55407e-73/proteasome activator complex subunit 1 [Rattus norvegicus]
gnl|UG|Ssc#S26726390	0	0	2	0.57	0	0	"AJ962474 KN404_2 Sus scrofa cDNA clone C0007755c22 3', mRNA sequence /clone=C0007755c22 /clone_end=3' /gb=AJ962474 /gi=74379290 /ug=Ssc.46511 /len=607"	-	-	-	gi|148645276|gb|ABR01162.1|/2.24464e-32/endonuclease/reverse transcriptase [Sus scrofa]
gnl|UG|Ssc#S58312426	5	1.44	2	0.57	17	5.11	"PREDICTED: Sus scrofa stress-70 protein, mitochondrial-like (LOC100521183), mRNA /cds=p(101,2140) /gb=XM_003123976 /gi=311250236 /ug=Ssc.44322 /len=2841"	GO:0005759//mitochondrial matrix	GO:0005515//protein binding;GO:0032559	GO:0044267//cellular protein metabolic process;GO:0006605//protein targeting;GO:0043066//negative regulation of apoptosis	"gi|311250237|ref|XP_003124024.1|/0/PREDICTED: stress-70 protein, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S46878331	21	6.05	22	6.29	24	7.21	"PREDICTED: Sus scrofa BTB (POZ) domain containing 1 (BTBD1), mRNA /cds=p(94,1548) /gb=XM_001929165 /gi=311260652 /ug=Ssc.57821 /len=3211"	GO:0030529//ribonucleoprotein complex	GO:0005488//binding	-	gi|194039570|ref|XP_001929200.1|/0/PREDICTED: BTB/POZ domain-containing protein 1 [Sus scrofa]
gnl|UG|Ssc#S55326284	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10148B03, expressed in ovary /gb=AK348367 /gi=288778542 /ug=Ssc.11952 /len=2124"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|149714172|ref|XP_001488585.1|/0/PREDICTED: similar to transmembrane protein 117 isoform 1 [Equus caballus]
gnl|UG|Ssc#S58310217	19	5.47	14	4	15	4.51	"PREDICTED: Sus scrofa separin-like (LOC100513986), mRNA /cds=p(55,6393) /gb=XM_003126177 /gi=311255435 /ug=Ssc.24916 /len=6555"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle	GO:0070011;GO:0005488//binding	GO:0012501//programmed cell death;GO:0007126//meiosis;GO:0000819//sister chromatid segregation;GO:0007063//regulation of sister chromatid cohesion;GO:0019538//protein metabolic process;GO:0007051//spindle organization;GO:0030071//regulation of mitotic metaphase/anaphase transition	gi|311255436|ref|XP_003126225.1|/0/PREDICTED: separin-like [Sus scrofa]
gnl|UG|Ssc#S20935896	163	46.93	316	90.33	119	35.76	"AJ647619 CSEQRAN19 Sus scrofa cDNA clone C0003260_D01, mRNA sequence /clone=C0003260_D01 /gb=AJ647619 /gi=49324464 /ug=Ssc.74077 /len=556"	GO:0032991//macromolecular complex	"GO:0017111//nucleoside-triphosphatase activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561"	GO:0006412//translation;GO:0009207	gi|297275803|ref|XP_001118006.2|/8.91656e-59/PREDICTED: elongation factor 2 [Macaca mulatta]
gnl|UG|Ssc#S58303838	2	0.58	5	1.43	0	0	"PREDICTED: Sus scrofa kelch-like protein 24-like (LOC100513048), partial mRNA /cds=p(1,883) /gb=XM_003132561 /gi=311269704 /ug=Ssc.92180 /len=977"	GO:0044424//intracellular part;GO:0043025//neuronal cell body;GO:0043005//neuron projection	-	-	"gi|311269705|ref|XP_003132609.1|/1.23379e-164/PREDICTED: kelch-like protein 24-like, partial [Sus scrofa]"
gnl|UG|Ssc#S23699836	25	7.2	10	2.86	4	1.2	"1110015 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN110939 /gi=59789513 /ug=Ssc.54426 /len=877"	GO:0005793//ER-Golgi intermediate compartment;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0015075//ion transmembrane transporter activity	GO:0006810//transport	gi|73956927|ref|XP_546782.2|/3.22865e-158/PREDICTED: similar to Protein FAM38A [Canis familiaris]
gnl|UG|Ssc#S6090752	18	5.18	2	0.57	14	4.21	"Sus scrofa JAK1 mRNA for Janus kinase 1, complete cds /cds=p(328,3753) /gb=AB036335 /gi=6635249 /ug=Ssc.328 /len=5065"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232;GO:0044444//cytoplasmic part	GO:0004871//signal transducer activity;GO:0048020;GO:0004713//protein tyrosine kinase activity;GO:0032559	GO:0006468//protein phosphorylation;GO:0035556//intracellular signal transduction;GO:0001959//regulation of cytokine-mediated signaling pathway	gi|47523036|ref|NP_999279.1|/0/tyrosine-protein kinase JAK1 [Sus scrofa]
gnl|UG|Ssc#S22415865	55	15.83	162	46.31	57	17.13	"Sus scrofa ryanodine receptor 1 (skeletal) (RYR1), mRNA /cds=p(130,15237) /gb=NM_001001534 /gi=55741720 /ug=Ssc.8 /len=15378"	GO:0016021//integral to membrane;GO:0033017//sarcoplasmic reticulum membrane;GO:0030017//sarcomere	GO:0005218//intracellular ligand-gated calcium channel activity;GO:0004871//signal transducer activity;GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0003012//muscle system process;GO:0051283;GO:0014074//response to purine-containing compound;GO:0006816//calcium ion transport;GO:0006950//response to stress	gi|55741721|ref|NP_001001534.1|/0/ryanodine receptor 1 [Sus scrofa]
gnl|UG|Ssc#S18382807	104	29.94	55	15.72	118	35.46	"933743 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK462916 /gi=40834197 /ug=Ssc.2141 /len=672"	-	-	-	gi|90084367|dbj|BAE91025.1|/1.85896e-08/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S58311570	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa calsenilin-like (LOC100524248), mRNA /cds=p(1,819) /gb=XM_003124836 /gi=311251997 /ug=Ssc.79274 /len=819"	-	-	-	-
gnl|UG|Ssc#S35169669	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10101C03, expressed in ovary /gb=AK235649 /gi=115550170 /ug=Ssc.54044 /len=1776"	-	GO:0005488//binding	GO:0048870//cell motility;GO:0010876;GO:0051234//establishment of localization;GO:0006629//lipid metabolic process;GO:0042360//vitamin E metabolic process	gi|47523640|ref|NP_999448.1|/0/phospholipid transfer protein [Sus scrofa]
gnl|UG|Ssc#S35172034	0	0	0	0	4	1.2	"Sus scrofa mRNA, clone:OVRM10015C03, expressed in ovary /gb=AK234777 /gi=115547801 /ug=Ssc.27336 /len=2514"	GO:0015630//microtubule cytoskeleton	-	-	gi|156121133|ref|NP_001095714.1|/7.5403e-145/tubulin polyglutamylase complex subunit 2 [Bos taurus]
gnl|UG|Ssc#S29986568	0	0	2	0.57	0	0	"PDUts2052G01 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2052G01 5', mRNA sequence /clone=PDUts2052G01 /clone_end=5' /gb=CX061044 /gi=84137186 /ug=Ssc.88847 /len=550"	-	-	-	-
gnl|UG|Ssc#S46879404	11	3.17	2	0.57	0	0	"PREDICTED: Sus scrofa tensin like C1 domain containing phosphatase (tensin 2) (TENC1), mRNA /cds=p(1,3000) /gb=XM_001924466 /gi=194037346 /ug=Ssc.92137 /len=3517"	GO:0005924//cell-substrate adherens junction	GO:0043169//cation binding;GO:0016791//phosphatase activity	GO:0008283//cell proliferation;GO:0007165//signal transduction	gi|194037347|ref|XP_001924501.1|/0/PREDICTED: tensin-like C1 domain-containing phosphatase [Sus scrofa]
gnl|UG|Ssc#S18546630	4	1.15	0	0	2	0.6	"BX915281 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0028.h.08 5prim, mRNA sequence /clone=scan0028.h.08 /clone_end=5' /gb=BX915281 /gi=90243021 /ug=Ssc.13668 /len=842"	GO:0044424//intracellular part	GO:0070011;GO:0016790//thiolester hydrolase activity;GO:0032182//small conjugating protein binding	GO:0008344//adult locomotory behavior;GO:0048856//anatomical structure development;GO:0019941//modification-dependent protein catabolic process;GO:0045597//positive regulation of cell differentiation;GO:0032868//response to insulin stimulus;GO:0007631//feeding behavior	gi|116175277|ref|NP_001070695.1|/1.39377e-107/ubiquitin carboxyl-terminal hydrolase isozyme L3 [Sus scrofa]
gnl|UG|Ssc#S58310208	1705	490.88	2838	811.24	1139	342.3	"PREDICTED: Sus scrofa poly(rC) binding protein 2 (PCBP2), mRNA /cds=p(200,1288) /gb=XM_003126193 /gi=311255458 /ug=Ssc.53965 /len=1794"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding;GO:0019899//enzyme binding	GO:0006952//defense response;GO:0051707//response to other organism;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0002698;GO:0000377;GO:0001818//negative regulation of cytokine production	gi|62087230|dbj|BAD92062.1|/0/poly(rC)-binding protein 2 isoform b variant [Homo sapiens]
gnl|UG|Ssc#S39995010	27	7.77	7	2	16	4.81	"recc2812c_i13.y1 ecc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW089919 /gi=181333982 /ug=Ssc.49542 /len=700"	GO:0044439	GO:0000268//peroxisome targeting sequence binding;GO:0005515//protein binding	GO:0051259//protein oligomerization;GO:0016558//protein import into peroxisome matrix	gi|149712473|ref|XP_001498199.1|/1.60084e-47/PREDICTED: peroxisomal biogenesis factor 5 isoform 1 [Equus caballus]
gnl|UG|Ssc#S40483020	33	9.5	13	3.72	16	4.81	"rspc002_p11.y1 spc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW577626 /gi=183057527 /ug=Ssc.29249 /len=672"	-	-	-	-
gnl|UG|Ssc#S20948543	0	0	0	0	5	1.5	"AJ660266 KN277 Sus scrofa cDNA clone C0005218_E24, mRNA sequence /clone=C0005218_E24 /gb=AJ660266 /gi=49344411 /ug=Ssc.85832 /len=659"	GO:0044464//cell part	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0008170//N-methyltransferase activity	GO:0006399//tRNA metabolic process;GO:0007626//locomotory behavior	"gi|119611595|gb|EAW91189.1|/6.4521e-82/chromosome 1 open reading frame 25, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S58301414	2	0.58	8	2.29	2	0.6	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 2 subunit 3-like (LOC100525970), mRNA /cds=p(456,1874) /gb=XM_003134980 /gi=311276051 /ug=Ssc.16426 /len=2579"	-	-	-	-
gnl|UG|Ssc#S20938569	5	1.44	0	0	9	2.7	"AJ650292 CSEQRAN19 Sus scrofa cDNA clone C0003274_P07, mRNA sequence /clone=C0003274_P07 /gb=AJ650292 /gi=49327137 /ug=Ssc.74058 /len=542"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0048029//monosaccharide binding;GO:0043169//cation binding;GO:0035251//UDP-glucosyltransferase activity	GO:0005977//glycogen metabolic process;GO:0019318//hexose metabolic process	gi|13591969|ref|NP_112305.1|/4.30834e-100/glycogenin-1 [Rattus norvegicus]
gnl|UG|Ssc#S35174084	12	3.45	3	0.86	10	3.01	"Sus scrofa mRNA, clone:OVR010021G09, expressed in ovary /gb=AK234184 /gi=115545751 /ug=Ssc.1132 /len=1783"	GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding;GO:0019900//kinase binding	GO:0007049//cell cycle;GO:0043066//negative regulation of apoptosis	"gi|73975777|ref|XP_532428.2|/0/PREDICTED: similar to zinc finger, C3HC type 1 [Canis familiaris]"
gnl|UG|Ssc#S35322304	3	0.86	0	0	3	0.9	"SusFleck_BFN_0001_0004_5_pCNS_L12 SusFleck Backfat Normalized Sus scrofa cDNA clone 0001_0004_L12 5', mRNA sequence /clone=0001_0004_L12 /clone_end=5' /gb=DT320696 /gi=116335699 /ug=Ssc.47837 /len=789"	GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0043169//cation binding;GO:0070061//fructose binding;GO:0008443//phosphofructokinase activity;GO:0019899//enzyme binding;GO:0019203//carbohydrate phosphatase activity;GO:0032559	GO:0006007//glucose catabolic process;GO:0050796//regulation of insulin secretion;GO:0009746;GO:0051260//protein homooligomerization;GO:0016310//phosphorylation;GO:0006000//fructose metabolic process	gi|194226309|ref|XP_001490527.2|/4.5814e-110/PREDICTED: similar to liver phosphofructokinase [Equus caballus]
gnl|UG|Ssc#S58315051	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa wiskott-Aldrich syndrome protein family member 1-like (LOC100154562), mRNA /cds=p(39,1574) /gb=XM_003121353 /gi=311244307 /ug=Ssc.64174 /len=1583"	GO:0005856//cytoskeleton;GO:0031252//cell leading edge;GO:0031966//mitochondrial membrane	GO:0008092//cytoskeletal protein binding	GO:0065003;GO:0008154//actin polymerization or depolymerization	gi|40788932|dbj|BAA13399.2|/2.50055e-177/KIAA0269 [Homo sapiens]
gnl|UG|Ssc#S55323364	4	1.15	0	0	3	0.9	"Sus scrofa mRNA, clone:BKFL10048B07, expressed in back fat /gb=AK344117 /gi=288781508 /ug=Ssc.8731 /len=1339"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0019866//organelle inner membrane	GO:0005515//protein binding	GO:0044267//cellular protein metabolic process;GO:0050953//sensory perception of light stimulus;GO:0006605//protein targeting;GO:0003006//developmental process involved in reproduction	gi|296209492|ref|XP_002751535.1|/1.1534e-15/PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-like [Callithrix jacchus]
gnl|UG|Ssc#S35164267	2	0.58	0	0	5	1.5	"Sus scrofa mRNA, clone:OVR010003H02, expressed in ovary /gb=AK234072 /gi=115555459 /ug=Ssc.31910 /len=2212"	GO:0044424//intracellular part	GO:0004674//protein serine/threonine kinase activity;GO:0046872//metal ion binding;GO:0005515//protein binding;GO:0032559	GO:0001932//regulation of protein phosphorylation;GO:0007243//intracellular protein kinase cascade;GO:0019932//second-messenger-mediated signaling	gi|194042932|ref|XP_001929345.1|/0/PREDICTED: calcium/calmodulin-dependent protein kinase kinase 2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58311146	148	42.61	95	27.16	120	36.06	"PREDICTED: Sus scrofa baculoviral IAP repeat-containing 6 (BIRC6), mRNA /cds=p(9,1430) /gb=XM_003125252 /gi=311252858 /ug=Ssc.821 /len=2397"	-	-	-	gi|297459878|ref|XP_002700766.1|/0/PREDICTED: baculoviral IAP repeat-containing 6 [Bos taurus]
gnl|UG|Ssc#S58301427	0	0	0	0	0	0	"PREDICTED: Sus scrofa SH3 domain-containing kinase-binding protein 1-like (LOC100522530), mRNA /cds=p(1,1692) /gb=XM_003134970 /gi=311276020 /ug=Ssc.11185 /len=2714"	GO:0031981//nuclear lumen;GO:0043232;GO:0005624//membrane fraction;GO:0005924//cell-substrate adherens junction;GO:0012506//vesicle membrane;GO:0044444//cytoplasmic part	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0019904//protein domain specific binding"	GO:0016192//vesicle-mediated transport;GO:0006915//apoptosis;GO:0006796//phosphate metabolic process;GO:0007154//cell communication;GO:0007173//epidermal growth factor receptor signaling pathway	gi|311276021|ref|XP_003135018.1|/0/PREDICTED: SH3 domain-containing kinase-binding protein 1-like [Sus scrofa]
gnl|UG|Ssc#S39766860	0	0	3	0.86	0	0	"raor001_b11.y1 aor Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV862138 /gi=178553005 /ug=Ssc.18956 /len=498"	-	-	-	-
gnl|UG|Ssc#S46881191	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA /cds=p(1,1752) /gb=XM_001924681 /gi=311246468 /ug=Ssc.45182 /len=1926"	GO:0016020//membrane;GO:0044424//intracellular part	GO:0030695//GTPase regulator activity	GO:0019222//regulation of metabolic process;GO:0035556//intracellular signal transduction	gi|311246469|ref|XP_001924716.2|/0/PREDICTED: ras-specific guanine nucleotide-releasing factor RalGPS1-like [Sus scrofa]
gnl|UG|Ssc#S58308856	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa tumor necrosis factor receptor superfamily member 9-like (LOC100519368), mRNA /cds=p(1,732) /gb=XM_003127547 /gi=311258389 /ug=Ssc.79213 /len=732"	-	-	-	-
gnl|UG|Ssc#S58306134	17	4.89	26	7.43	12	3.61	"PREDICTED: Sus scrofa cAMP-dependent protein kinase type II-beta regulatory subunit-like (LOC100519615), mRNA /cds=p(1,1380) /gb=XM_003130266 /gi=311264737 /ug=Ssc.1135 /len=1866"	GO:0005626//insoluble fraction;GO:0044425//membrane part;GO:0043234//protein complex;GO:0019866//organelle inner membrane;GO:0044444//cytoplasmic part	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0016208//AMP binding;GO:0051018//protein kinase A binding;GO:0019887//protein kinase regulator activity"	GO:0009653//anatomical structure morphogenesis;GO:0015980//energy derivation by oxidation of organic compounds;GO:0007599//hemostasis;GO:0007611//learning or memory;GO:0033762//response to glucagon stimulus;GO:0032147//activation of protein kinase activity;GO:0010863//positive regulation of phospholipase C activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0022402//cell cycle process;GO:0030073//insulin secretion;GO:0032787//monocarboxylic acid metabolic process;GO:0042044//fluid transport	gi|311264738|ref|XP_003130314.1|/0/PREDICTED: cAMP-dependent protein kinase type II-beta regulatory subunit-like [Sus scrofa]
gnl|UG|Ssc#S34518426	10	2.88	8	2.29	10	3.01	"DB788570 full-length enriched swine cDNA library, adult adrenal gland Sus scrofa cDNA clone ADR010079H04 5', mRNA sequence /clone=ADR010079H04 /clone_end=5' /gb=DB788570 /gi=112782134 /ug=Ssc.5042 /len=867"	-	-	-	-
gnl|UG|Ssc#S58307286	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa coiled-coil domain containing 158 (CCDC158), mRNA /cds=p(1,3342) /gb=XM_003129094 /gi=311262389 /ug=Ssc.79404 /len=3342"	-	-	-	-
gnl|UG|Ssc#S46879993	9	2.59	4	1.14	0	0	"PREDICTED: Sus scrofa DENN/MADD domain containing 4B (DENND4B), mRNA /cds=p(1,4482) /gb=XM_001929512 /gi=311254245 /ug=Ssc.80745 /len=5263"	-	-	-	gi|194036128|ref|XP_001929547.1|/0/PREDICTED: DENN domain-containing protein 4B [Sus scrofa]
gnl|UG|Ssc#S35171125	47	13.53	62	17.72	38	11.42	"Sus scrofa mRNA, clone:LNG010022F08, expressed in lung /gb=AK231780 /gi=115548714 /ug=Ssc.46218 /len=2003"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003707//steroid hormone receptor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0035258//steroid hormone receptor binding	GO:0035272//exocrine system development;GO:0032091//negative regulation of protein binding;GO:0030518//steroid hormone receptor signaling pathway;GO:0009968//negative regulation of signal transduction;GO:0060740//prostate gland epithelium morphogenesis;GO:0001763//morphogenesis of a branching structure;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0048522;GO:0050680//negative regulation of epithelial cell proliferation;GO:0007346//regulation of mitotic cell cycle	gi|300793776|ref|NP_001178084.1|/3.02013e-77/homeobox protein Nkx-3.1 [Bos taurus]
gnl|UG|Ssc#S20948180	0	0	0	0	0	0	"AJ659903 KN277 Sus scrofa cDNA clone C0005217_E18, mRNA sequence /clone=C0005217_E18 /gb=AJ659903 /gi=49344048 /ug=Ssc.41351 /len=705"	-	-	-	gi|291414070|ref|XP_002723287.1|/1.31408e-46/PREDICTED: bromodomain and WD repeat domain containing 1 isoform B (predicted)-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S35165723	38	10.94	0	0	30	9.02	"Sus scrofa mRNA, clone:LVRM10103F09, expressed in liver /gb=AK233212 /gi=115554003 /ug=Ssc.52010 /len=2572"	GO:0005740//mitochondrial envelope;GO:0031224//intrinsic to membrane	GO:0015075//ion transmembrane transporter activity;GO:0015142//tricarboxylic acid transmembrane transporter activity	GO:0000041//transition metal ion transport	gi|73998661|ref|XP_543977.2|/9.09841e-170/PREDICTED: similar to Sideroflexin-3 [Canis familiaris]
gnl|UG|Ssc#S46879042	5	1.44	4	1.14	4	1.2	"PREDICTED: Sus scrofa CDC42 binding protein kinase beta (DMPK-like) (CDC42BPB), mRNA /cds=p(1,4998) /gb=XM_001925531 /gi=194038104 /ug=Ssc.2495 /len=6271"	GO:0030054//cell junction;GO:0043232	GO:0030695//GTPase regulator activity;GO:0004672//protein kinase activity;GO:0017016//Ras GTPase binding;GO:0046872//metal ion binding;GO:0032559	GO:0019222//regulation of metabolic process;GO:0006796//phosphate metabolic process;GO:0030036//actin cytoskeleton organization;GO:0007165//signal transduction;GO:0006464//protein modification process	gi|194038105|ref|XP_001925566.1|/0/PREDICTED: serine/threonine-protein kinase MRCK beta [Sus scrofa]
gnl|UG|Ssc#S55251530	0	0	0	0	0	0	"FS712453 full-length enriched swine cDNA library, adult pituitary gland Sus scrofa cDNA clone PTG010099B10 5', mRNA sequence /clone=PTG010099B10 /clone_end=5' /gb=FS712453 /gi=288247554 /ug=Ssc.77175 /len=692"	-	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	GO:0032501//multicellular organismal process	"gi|297665563|ref|XP_002811116.1|/7.48622e-132/PREDICTED: zinc finger MYM-type protein 4, partial [Pongo abelii]"
gnl|UG|Ssc#S46877500	96	27.64	65	18.58	80	24.04	"PREDICTED: Sus scrofa SET domain containing 5 (SETD5), mRNA /cds=p(1,3405) /gb=XM_001927800 /gi=311269220 /ug=Ssc.1025 /len=3791"	-	-	-	gi|311269221|ref|XP_001927835.2|/0/PREDICTED: SET domain-containing protein 5 [Sus scrofa]
gnl|UG|Ssc#S35165215	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10165D09, expressed in liver /gb=AK233521 /gi=115554511 /ug=Ssc.19278 /len=1629"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0005488//binding	GO:0016073	gi|115496081|ref|NP_001069221.1|/4.93064e-160/integrator complex subunit 12 [Bos taurus]
gnl|UG|Ssc#S58301773	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa ubinuclein 2 (UBN2), mRNA /cds=p(1,3816) /gb=XM_003134628 /gi=311275296 /ug=Ssc.34069 /len=3816"	-	-	-	gi|311275297|ref|XP_003134676.1|/0/PREDICTED: ubinuclein-2-like [Sus scrofa]
gnl|UG|Ssc#S35186224	39	11.23	11	3.14	15	4.51	"Sus scrofa mRNA for CLIM2, complete cds /cds=p(124,1245) /gb=AB242619 /gi=115635847 /ug=Ssc.1678 /len=1776"	GO:0000785//chromatin;GO:0032991//macromolecular complex;GO:0044428//nuclear part;GO:0030054//cell junction	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0019904//protein domain specific binding;GO:0042802//identical protein binding	"GO:0007166//cell surface receptor linked signaling pathway;GO:0045638//negative regulation of myeloid cell differentiation;GO:0008544//epidermis development;GO:0007369//gastrulation;GO:0010557;GO:0021533//cell differentiation in hindbrain;GO:0030155//regulation of cell adhesion;GO:0019827//stem cell maintenance;GO:0009798//axis specification;GO:0006354//transcription elongation, DNA-dependent;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0030218//erythrocyte differentiation;GO:0022037//metencephalon development;GO:0043966//histone H3 acetylation;GO:0001894//tissue homeostasis"	gi|187469679|gb|AAI66757.1|/0/Ldb1 protein [Rattus norvegicus]
gnl|UG|Ssc#S31108417	0	0	0	0	0	0	"1518008 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY412255 /gi=87213558 /ug=Ssc.47543 /len=777"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044459//plasma membrane part;GO:0031090//organelle membrane;GO:0012505//endomembrane system	GO:0017111//nucleoside-triphosphatase activity;GO:0005319//lipid transporter activity;GO:0032559	GO:0009207;GO:0015914//phospholipid transport;GO:0006897//endocytosis	gi|301776306|ref|XP_002923584.1|/3.01716e-91/PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 7-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55318348	21	6.05	16	4.57	62	18.63	"Sus scrofa mRNA, clone:MLN010091E04, expressed in mesenteric lymph nodes /gb=AK347018 /gi=288786536 /ug=Ssc.27951 /len=3443"	GO:0043231//intracellular membrane-bounded organelle;GO:0031252//cell leading edge;GO:0005903//brush border;GO:0044459//plasma membrane part	GO:0004620//phospholipase activity;GO:0019901//protein kinase binding;GO:0005543//phospholipid binding	GO:0030155//regulation of cell adhesion;GO:0002029//desensitization of G-protein coupled receptor protein signaling pathway;GO:0000302//response to reactive oxygen species;GO:0006996//organelle organization;GO:0030030//cell projection organization;GO:0009967//positive regulation of signal transduction;GO:0045807//positive regulation of endocytosis;GO:0009725//response to hormone stimulus;GO:0006644//phospholipid metabolic process;GO:0016477//cell migration;GO:0033008;GO:0035556//intracellular signal transduction	gi|15929160|gb|AAH15033.1|/0/Phospholipase D2 [Homo sapiens] 
gnl|UG|Ssc#S50180456	6	1.73	9	2.57	2	0.6	"susfleck_LM_6_G07 SUSFLECK Loin Muscle Sus scrofa cDNA clone 6_G07, mRNA sequence /clone=6_G07 /gb=FD612292 /gi=221013411 /ug=Ssc.20141 /len=832"	GO:0043292//contractile fiber;GO:0016460//myosin II complex	GO:0017111//nucleoside-triphosphatase activity;GO:0046872//metal ion binding;GO:0003779//actin binding;GO:0005198//structural molecule activity	GO:0003015//heart process;GO:0016049//cell growth;GO:0003012//muscle system process;GO:0030239//myofibril assembly;GO:0002376//immune system process;GO:0001708//cell fate specification;GO:0055008//cardiac muscle tissue morphogenesis	gi|117660856|gb|ABK55641.1|/1.77434e-86/HUMMLC2B [Sus scrofa]
gnl|UG|Ssc#S58303034	20	5.76	41	11.72	18	5.41	"PREDICTED: Sus scrofa BAG family molecular chaperone regulator 4-like (LOC100520868), mRNA /cds=p(139,2235) /gb=XM_003133354 /gi=311272361 /ug=Ssc.45139 /len=3423"	GO:0043232	GO:0046914//transition metal ion binding;GO:0016279//protein-lysine N-methyltransferase activity	GO:0016571//histone methylation;GO:0040007//growth;GO:0048869	gi|311272362|ref|XP_003133402.1|/0/PREDICTED: BAG family molecular chaperone regulator 4-like [Sus scrofa]
gnl|UG|Ssc#S58312614	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa protein FAM172A-like (LOC100521436), partial mRNA /cds=p(1,855) /gb=XM_003123787 /gi=311249848 /ug=Ssc.32744 /len=855"	GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|311249849|ref|XP_003123835.1|/5.84261e-149/PREDICTED: protein FAM172A-like, partial [Sus scrofa]"
gnl|UG|Ssc#S39983477	0	0	2	0.57	3	0.9	"rebs28c_f16.y1 ebs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW078542 /gi=181238676 /ug=Ssc.46602 /len=620"	-	-	-	gi|148645276|gb|ABR01162.1|/1.07946e-40/endonuclease/reverse transcriptase [Sus scrofa]
gnl|UG|Ssc#S58313484	0	0	13	3.72	2	0.6	"PREDICTED: Sus scrofa protein arginine methyltransferase 3 (PRMT3), mRNA /cds=p(1,1494) /gb=XM_003122919 /gi=311248080 /ug=Ssc.25975 /len=2321"	GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0046914//transition metal ion binding;GO:0016274//protein-arginine N-methyltransferase activity	GO:0035247//peptidyl-arginine omega-N-methylation	gi|311248081|ref|XP_003122967.1|/0/PREDICTED: protein arginine N-methyltransferase 3-like [Sus scrofa]
gnl|UG|Ssc#S55321415	55	15.83	21	6	29	8.72	"Sus scrofa mRNA, clone:TES010094E11, expressed in testis /gb=AK351341 /gi=288783457 /ug=Ssc.6624 /len=1251"	GO:0005635//nuclear envelope;GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	-	GO:0022613//ribonucleoprotein complex biogenesis	gi|311258623|ref|XP_003127704.1|/8.87519e-124/PREDICTED: mRNA turnover protein 4 homolog [Sus scrofa]
gnl|UG|Ssc#S58301322	14	4.03	6	1.72	11	3.31	"PREDICTED: Sus scrofa transcription factor E3-like (LOC100511298), mRNA /cds=p(1,1728) /gb=XM_003135074 /gi=311276258 /ug=Ssc.4131 /len=3118"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0046983//protein dimerization activity	GO:0006955//immune response;GO:0002761//regulation of myeloid leukocyte differentiation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|1524099|emb|CAA65800.1|/4.45361e-170/TFE3 transcription factor [Homo sapiens]
gnl|UG|Ssc#S23776317	21	6.05	30	8.58	41	12.32	"998639 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN133936 /gi=59828253 /ug=Ssc.22867 /len=856"	-	-	-	-
gnl|UG|Ssc#S58305238	4	1.15	17	4.86	8	2.4	"PREDICTED: Sus scrofa e3 SUMO-protein ligase CBX4-like (LOC100511584), mRNA /cds=p(1,1644) /gb=XM_003131145 /gi=311266692 /ug=Ssc.95551 /len=1681"	GO:0031981//nuclear lumen;GO:0043232	GO:0003723//RNA binding;GO:0003712//transcription cofactor activity;GO:0042393//histone binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006325//chromatin organization;GO:0043066//negative regulation of apoptosis	gi|311266693|ref|XP_003131193.1|/0/PREDICTED: e3 SUMO-protein ligase CBX4-like [Sus scrofa]
gnl|UG|Ssc#S58307183	30	8.64	4	1.14	37	11.12	"PREDICTED: Sus scrofa uncharacterized protein KIAA1109-like (LOC100521104), mRNA /cds=p(1,15000) /gb=XM_003129214 /gi=311262600 /ug=Ssc.8444 /len=15515"	-	-	-	gi|311262601|ref|XP_003129262.1|/0/PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein KIAA1109-like [Sus scrofa]
gnl|UG|Ssc#S58304241	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa kinesin family member 15 (KIF15), mRNA /cds=p(38,3862) /gb=XM_003132157 /gi=311268774 /ug=Ssc.47022 /len=3862"	GO:0005815//microtubule organizing center;GO:0005871//kinesin complex	GO:0003676//nucleic acid binding;GO:0003774//motor activity;GO:0032559	GO:0000087//M phase of mitotic cell cycle;GO:0007017//microtubule-based process;GO:0007599//hemostasis	gi|311268775|ref|XP_003132205.1|/0/PREDICTED: kinesin-like protein KIF15-like [Sus scrofa]
gnl|UG|Ssc#S55322739	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:DCI010017H03, expressed in dendritic cells (immature) /gb=AK344344 /gi=288782133 /ug=Ssc.7184 /len=1779"	GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding;GO:0003824//catalytic activity	GO:0008152//metabolic process	gi|311264998|ref|XP_003130429.1|/1.51778e-166/PREDICTED: protein odr-4 homolog [Sus scrofa]
gnl|UG|Ssc#S20935907	51	14.68	28	8	14	4.21	"AJ647630 CSEQRAN19 Sus scrofa cDNA clone C0003260_D12, mRNA sequence /clone=C0003260_D12 /gb=AJ647630 /gi=49324475 /ug=Ssc.85521 /len=541"	GO:0031227//intrinsic to endoplasmic reticulum membrane;GO:0042598//vesicular fraction	GO:0046914//transition metal ion binding;GO:0016215	GO:0010872//regulation of cholesterol esterification;GO:0042742//defense response to bacterium;GO:0045444//fat cell differentiation;GO:0006631//fatty acid metabolic process;GO:0008366//axon ensheathment;GO:0044126	"gi|149040246|gb|EDL94284.1|/2.57545e-89/rCG57790, isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S55323954	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:AMP010023G02, expressed in alveolar macrophages /gb=AK343707 /gi=288780918 /ug=Ssc.82320 /len=778"	GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0019899//enzyme binding	GO:0001818//negative regulation of cytokine production;GO:0043433//negative regulation of transcription factor activity;GO:0043066//negative regulation of apoptosis	gi|297288630|ref|XP_002803388.1|/1.33059e-101/PREDICTED: tax1-binding protein 1 homolog [Macaca mulatta]
gnl|UG|Ssc#S46876310	87	25.05	73	20.87	68	20.44	"PREDICTED: Sus scrofa NOP58 ribonucleoprotein homolog (yeast) (NOP58), mRNA /cds=p(217,1839) /gb=XM_001924806 /gi=311272909 /ug=Ssc.56316 /len=3150"	GO:0016604//nuclear body;GO:0005732//small nucleolar ribonucleoprotein complex	GO:0003723//RNA binding;GO:0043021//ribonucleoprotein binding	GO:0006606//protein import into nucleus;GO:0040007//growth;GO:0042254//ribosome biogenesis	gi|311272910|ref|XP_001924841.2|/0/PREDICTED: nucleolar protein 58 [Sus scrofa]
gnl|UG|Ssc#S47626227	7	2.02	0	0	5	1.5	"Sus scrofa WD and tetratricopeptide repeats 1 (WDTC1) mRNA, complete cds /cds=p(87,2123) /gb=EU559626 /gi=190361516 /ug=Ssc.11356 /len=2214"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0030234//enzyme regulator activity;GO:0019899//enzyme binding	GO:0019318//hexose metabolic process;GO:0040007//growth;GO:0032535;GO:0019725//cellular homeostasis;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0032868//response to insulin stimulus	gi|209863045|ref|NP_001129436.1|/0/WD and tetratricopeptide repeats protein 1 [Sus scrofa]
gnl|UG|Ssc#S33346547	0	0	0	0	2	0.6	"Sus scrofa transforming growth factor beta type 1 receptor (TGFBR1) mRNA, complete cds, alternatively spliced /cds=p(63,1574) /gb=DQ519378 /gi=108755895 /ug=Ssc.23794 /len=1813"	GO:0031224//intrinsic to membrane;GO:0044459//plasma membrane part;GO:0043235//receptor complex	GO:0005160//transforming growth factor beta receptor binding;GO:0032559;GO:0005024//transforming growth factor beta receptor activity;GO:0019838//growth factor binding;GO:0043169//cation binding;GO:0046983//protein dimerization activity;GO:0019899//enzyme binding;GO:0046332//SMAD binding	GO:0048704//embryonic skeletal system morphogenesis;GO:0006915//apoptosis;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0001701//in utero embryonic development;GO:0009628//response to abiotic stimulus;GO:0048732//gland development;GO:0048534;GO:0016049//cell growth;GO:0031346//positive regulation of cell projection organization;GO:0034694//response to prostaglandin stimulus;GO:0001934//positive regulation of protein phosphorylation;GO:0012502//induction of programmed cell death;GO:0030857//negative regulation of epithelial cell differentiation;GO:0042307//positive regulation of protein import into nucleus;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0007276//gamete generation;GO:0051098//regulation of binding;GO:0030198//extracellular matrix organization;GO:0045165//cell fate commitment;GO:0048545//response to steroid hormone stimulus;GO:0008283//cell proliferation;GO:0048514//blood vessel morphogenesis;GO:0006928//cellular component movement;GO:0010628//positive regulation of gene expression;GO:0003002//regionalization;GO:0030323//respiratory tube development;GO:0006950//response to stress;GO:0000165//MAPKKK cascade	gi|108755896|gb|ABG02973.1|/0/transforming growth factor beta type 1 receptor [Sus scrofa]
gnl|UG|Ssc#S58301814	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa caspase-2-like (LOC100520158), mRNA /cds=p(42,1400) /gb=XM_003134567 /gi=311275210 /ug=Ssc.9673 /len=1542"	GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0004175//endopeptidase activity;GO:0005515//protein binding	GO:0007417//central nervous system development;GO:0022602//ovulation cycle process;GO:0006917//induction of apoptosis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006508//proteolysis;GO:0009612//response to mechanical stimulus	gi|311275211|ref|XP_003134615.1|/0/PREDICTED: caspase-2-like [Sus scrofa]
gnl|UG|Ssc#S35168088	17	4.89	5	1.43	11	3.31	"Sus scrofa mRNA, clone:THY010060E06, expressed in thymus /gb=AK239066 /gi=115551602 /ug=Ssc.2753 /len=1845"	GO:0005815//microtubule organizing center;GO:0000778//condensed nuclear chromosome kinetochore;GO:0005819//spindle	GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0032559;GO:0032403//protein complex binding;GO:0019900//kinase binding	GO:0001934//positive regulation of protein phosphorylation;GO:0042221//response to chemical stimulus;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0031647//regulation of protein stability;GO:0030162//regulation of proteolysis;GO:0007143//female meiosis;GO:0031398//positive regulation of protein ubiquitination;GO:0000079//regulation of cyclin-dependent protein kinase activity;GO:0034502//protein localization to chromosome;GO:0000077//DNA damage checkpoint;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0031331;GO:0000090//mitotic anaphase;GO:0051098//regulation of binding	gi|301782381|ref|XP_002926608.1|/0/PREDICTED: serine/threonine-protein kinase PLK1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58313886	64	18.43	112	32.02	72	21.64	"PREDICTED: Sus scrofa probable RNA-binding protein EIF1AD-like, transcript variant 1 (LOC100522537), mRNA /cds=p(608,1108) /gb=XM_003122508 /gi=311247257 /ug=Ssc.51901 /len=1279"	GO:0043231//intracellular membrane-bounded organelle	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation	gi|311247258|ref|XP_003122556.1|/7.13335e-76/PREDICTED: probable RNA-binding protein EIF1AD-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S23694943	2	0.58	0	0	0	0	"1102395 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN106046 /gi=59781309 /ug=Ssc.38519 /len=850"	GO:0043005//neuron projection;GO:0005604//basement membrane;GO:0044297//cell body;GO:0044432//endoplasmic reticulum part;GO:0031224//intrinsic to membrane;GO:0012505//endomembrane system;GO:0044459//plasma membrane part;GO:0045202//synapse	GO:0043236//laminin binding;GO:0042165//neurotransmitter binding;GO:0042802//identical protein binding;GO:0043169//cation binding;GO:0004091//carboxylesterase activity	"GO:0001649//osteoblast differentiation;GO:0001881//receptor recycling;GO:0006898//receptor-mediated endocytosis;GO:0031346//positive regulation of cell projection organization;GO:0006259//DNA metabolic process;GO:0048513//organ development;GO:0009100//glycoprotein metabolic process;GO:0032800//receptor biosynthetic process;GO:0051259//protein oligomerization;GO:0006950//response to stress;GO:0007399//nervous system development;GO:0007271//synaptic transmission, cholinergic;GO:0006581//acetylcholine catabolic process"	gi|115497516|ref|NP_001069688.1|/4.77371e-111/acetylcholinesterase precursor [Bos taurus]
gnl|UG|Ssc#S58304490	221	63.63	264	75.46	107	32.16	"PREDICTED: Sus scrofa profilin-1-like, transcript variant 1 (LOC100512494), mRNA /cds=p(201,623) /gb=XM_003131907 /gi=311268232 /ug=Ssc.835 /len=890"	GO:0043231//intracellular membrane-bounded organelle;GO:0005624//membrane fraction;GO:0005856//cytoskeleton;GO:0044444//cytoplasmic part	GO:0035091//phosphatidylinositol binding;GO:0008092//cytoskeletal protein binding;GO:0017016//Ras GTPase binding	GO:0070848//response to growth factor stimulus;GO:0032233//positive regulation of actin filament bundle assembly;GO:0014020;GO:0007599//hemostasis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0030832//regulation of actin filament length;GO:0010604;GO:0006887//exocytosis;GO:0001775//cell activation;GO:0045935	"gi|149053224|gb|EDM05041.1|/1.33251e-85/profilin 1, isoform CRA_c [Rattus norvegicus]"
gnl|UG|Ssc#S55322711	2	0.58	17	4.86	2	0.6	"Sus scrofa mRNA, clone:DCI010026C01, expressed in dendritic cells (immature) /gb=AK344372 /gi=288782161 /ug=Ssc.7220 /len=3269"	GO:0043231//intracellular membrane-bounded organelle	GO:0004672//protein kinase activity;GO:0032559	GO:0006468//protein phosphorylation	gi|311249572|ref|XP_003123698.1|/0/PREDICTED: dual specificity protein kinase CLK4-like [Sus scrofa]
gnl|UG|Ssc#S58307210	0	0	0	0	0	0	"PREDICTED: Sus scrofa CCR4 carbon catabolite repression 4-like (S. cerevisiae) (CCRN4L), mRNA /cds=p(1,1284) /gb=XM_003129187 /gi=311262544 /ug=Ssc.9136 /len=1681"	GO:0043231//intracellular membrane-bounded organelle	GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|311262545|ref|XP_003129235.1|/0/PREDICTED: nocturnin-like [Sus scrofa]
gnl|UG|Ssc#S55326880	12	3.45	8	2.29	0	0	"Sus scrofa mRNA, clone:OVR010095D08, expressed in ovary /gb=AK347771 /gi=288777946 /ug=Ssc.47109 /len=1319"	-	-	-	gi|296490227|gb|DAA32340.1|/2.926e-49/hypothetical protein BOS_2232 [Bos taurus]
gnl|UG|Ssc#S35167472	6	1.73	0	0	3	0.9	"Sus scrofa mRNA, clone:AMP010011D11, expressed in alveolar macrophage /gb=AK230576 /gi=115552267 /ug=Ssc.11103 /len=1439"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0000267//cell fraction	GO:0016615//malate dehydrogenase activity;GO:0000166//nucleotide binding	GO:0043648//dicarboxylic acid metabolic process;GO:0009060//aerobic respiration;GO:0019674//NAD metabolic process;GO:0006006//glucose metabolic process	"gi|47523114|ref|NP_999039.1|/3.19108e-176/malate dehydrogenase, cytoplasmic [Sus scrofa]"
gnl|UG|Ssc#S19547882	30	8.64	39	11.15	13	3.91	"994165 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN164049 /gi=46178479 /ug=Ssc.16352 /len=879"	-	-	-	-
gnl|UG|Ssc#S58311696	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa f-box/LRR-repeat protein 16-like (LOC100511074), mRNA /cds=p(289,1725) /gb=XM_003124707 /gi=311251730 /ug=Ssc.93568 /len=1725"	-	-	-	gi|311251731|ref|XP_003124755.1|/0/PREDICTED: LOW QUALITY PROTEIN: f-box/LRR-repeat protein 16-like [Sus scrofa]
gnl|UG|Ssc#S58310286	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa dnaJ homolog subfamily C member 22-like (LOC100513730), partial mRNA /cds=p(691,1712) /gb=XM_003126114 /gi=311255279 /ug=Ssc.27967 /len=1712"	GO:0016020//membrane	GO:0005515//protein binding	-	"gi|311255280|ref|XP_003126162.1|/1.05506e-152/PREDICTED: dnaJ homolog subfamily C member 22-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58306258	18	5.18	18	5.15	16	4.81	"PREDICTED: Sus scrofa ankyrin repeat and IBR domain containing 1 (ANKIB1), mRNA /cds=p(1,3279) /gb=XM_003130136 /gi=311264480 /ug=Ssc.7931 /len=5693"	-	GO:0046914//transition metal ion binding	-	gi|311264481|ref|XP_003130184.1|/0/PREDICTED: ankyrin repeat and IBR domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58312898	6636	1910.54	15951	4559.57	6133	1843.13	"PREDICTED: Sus scrofa 60S ribosomal protein L18a-like (LOC100520891), mRNA /cds=p(1,675) /gb=XM_003123511 /gi=311249267 /ug=Ssc.1277 /len=796"	GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|311249268|ref|XP_003123559.1|/1.41028e-130/PREDICTED: 60S ribosomal protein L18a-like [Sus scrofa]
gnl|UG|Ssc#S46878223	16	4.61	3	0.86	5	1.5	"PREDICTED: Sus scrofa hypothetical protein LOC100156126 (LOC100156126), mRNA /cds=p(1,1317) /gb=XM_001926180 /gi=194039791 /ug=Ssc.30811 /len=1317"	GO:0000785//chromatin;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0005515//protein binding	GO:0034728	gi|194039792|ref|XP_001926215.1|/0/PREDICTED: hypothetical protein LOC100156126 [Sus scrofa]
gnl|UG|Ssc#S55323510	46	13.24	72	20.58	31	9.32	"Sus scrofa mRNA, clone:AMP010095C11, expressed in alveolar macrophages /gb=AK343971 /gi=288781362 /ug=Ssc.87457 /len=1599"	GO:0044464//cell part	-	-	gi|73980575|ref|XP_532882.2|/1.17808e-07/PREDICTED: similar to SMC6 protein [Canis familiaris]
gnl|UG|Ssc#S20945959	15	4.32	4	1.14	3	0.9	"AJ657682 KN277 Sus scrofa cDNA clone C0005195_H10, mRNA sequence /clone=C0005195_H10 /gb=AJ657682 /gi=49341751 /ug=Ssc.50836 /len=685"	-	-	-	-
gnl|UG|Ssc#S18549186	29	8.35	45	12.86	29	8.72	"BX917837 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0033.n.02 5prim, mRNA sequence /clone=scan0033.n.02 /clone_end=5' /gb=BX917837 /gi=90243409 /ug=Ssc.83180 /len=867"	-	-	-	-
gnl|UG|Ssc#S58313590	136	39.16	77	22.01	93	27.95	"PREDICTED: Sus scrofa CUGBP Elav-like family member 1-like (LOC100514512), mRNA /cds=p(1,1026) /gb=XM_003122820 /gi=311247868 /ug=Ssc.7511 /len=2079"	GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle	GO:0030371//translation repressor activity;GO:0003723//RNA binding;GO:0005515//protein binding	GO:0000245//spliceosome assembly;GO:0035264//multicellular organism growth;GO:0035194//posttranscriptional gene silencing by RNA;GO:0007281//germ cell development;GO:0007275//multicellular organismal development	"gi|148695565|gb|EDL27512.1|/8.92298e-135/CUG triplet repeat, RNA binding protein 1, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S58300999	6	1.73	0	0	0	0	"PREDICTED: Sus scrofa muscleblind-like protein 3-like (LOC100512149), mRNA /cds=p(1,993) /gb=XM_003135386 /gi=311276989 /ug=Ssc.35025 /len=1775"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0006396//RNA processing;GO:0010468//regulation of gene expression;GO:0045661//regulation of myoblast differentiation	gi|311276990|ref|XP_003135434.1|/3.34554e-133/PREDICTED: muscleblind-like protein 3-like [Sus scrofa]
gnl|UG|Ssc#S35173451	0	0	0	0	0	0	"Sus scrofa mRNA, clone:AMP010061H10, expressed in alveolar macrophage /gb=AK230903 /gi=115546384 /ug=Ssc.29875 /len=2029"	GO:0043231//intracellular membrane-bounded organelle	GO:0008483//transaminase activity;GO:0042802//identical protein binding;GO:0016846//carbon-sulfur lyase activity;GO:0048037//cofactor binding	GO:0006575//cellular modified amino acid metabolic process;GO:0043648//dicarboxylic acid metabolic process;GO:0006568//tryptophan metabolic process	gi|311254836|ref|XP_003125974.1|/0/PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58303699	129	37.14	160	45.74	190	57.1	"PREDICTED: Sus scrofa PEST proteolytic signal-containing nuclear protein-like (LOC100521336), mRNA /cds=p(16,552) /gb=XM_003132696 /gi=311270049 /ug=Ssc.49772 /len=2379"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0006511//ubiquitin-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation	gi|311270050|ref|XP_003132744.1|/2.49118e-57/PREDICTED: PEST proteolytic signal-containing nuclear protein-like [Sus scrofa]
gnl|UG|Ssc#S58304707	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa integrator complex subunit 2-like (LOC100525182), partial mRNA /cds=p(1,2257) /gb=XM_003131691 /gi=311267786 /ug=Ssc.75702 /len=2815"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme;GO:0005635//nuclear envelope;GO:0031224//intrinsic to membrane"	GO:0005488//binding	GO:0016073	"gi|311267787|ref|XP_003131739.1|/0/PREDICTED: integrator complex subunit 2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58315175	19	5.47	31	8.86	15	4.51	"PREDICTED: Sus scrofa heat shock transcription factor 2 (HSF2), mRNA /cds=p(88,1695) /gb=XM_003121229 /gi=311244014 /ug=Ssc.6803 /len=2464"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0042802//identical protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	"GO:0050896//response to stimulus;GO:0048232//male gamete generation;GO:0006351//transcription, DNA-dependent"	gi|311244015|ref|XP_003121277.1|/0/PREDICTED: heat shock factor protein 2-like [Sus scrofa]
gnl|UG|Ssc#S46877471	29	8.35	25	7.15	32	9.62	"PREDICTED: Sus scrofa Sec61 alpha 1 subunit (S. cerevisiae) (SEC61A1), mRNA /cds=p(1,2397) /gb=XM_001924481 /gi=311269371 /ug=Ssc.21043 /len=4114"	GO:0031227//intrinsic to endoplasmic reticulum membrane;GO:0005792//microsome	GO:0043021//ribonucleoprotein binding;GO:0008320//protein transmembrane transporter activity	GO:0006605//protein targeting;GO:0034097//response to cytokine stimulus	gi|194041367|ref|XP_001924516.1|/0/PREDICTED: protein transport protein Sec61 subunit alpha isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55325659	71	20.44	98	28.01	53	15.93	"Sus scrofa mRNA, clone:PBL010087A10, expressed in peripheral blood mononuclear cells /gb=AK348992 /gi=288779167 /ug=Ssc.1779 /len=1961"	GO:0042995//cell projection	GO:0005099//Ras GTPase activator activity;GO:0019904//protein domain specific binding	GO:0032313//regulation of Rab GTPase activity	gi|194043214|ref|XP_001929232.1|/0/PREDICTED: TBC1 domain family member 10A-like [Sus scrofa]
gnl|UG|Ssc#S23213121	19	5.47	5	1.43	29	8.72	"Sus scrofa clone Clu_38067.scr.msk.p1.Contig1, mRNA sequence /gb=AY609887 /gi=52351457 /ug=Ssc.3817 /len=736"	GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	GO:0051084//'de novo' posttranslational protein folding;GO:0010467//gene expression	gi|311252561|ref|XP_003125153.1|/1.74726e-44/PREDICTED: prefoldin subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S58302422	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa ankyrin repeat domain 55 (ANKRD55), mRNA /cds=p(242,2083) /gb=XM_003133972 /gi=311273756 /ug=Ssc.10711 /len=2449"	-	-	-	gi|311273757|ref|XP_003134020.1|/0/PREDICTED: ankyrin repeat domain-containing protein 55-like [Sus scrofa]
gnl|UG|Ssc#S55327534	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:MLTL10014E10, expressed in longissimus /gb=AK347115 /gi=288576520 /ug=Ssc.37707 /len=1518"	GO:0005884//actin filament;GO:0032432//actin filament bundle;GO:0000267//cell fraction;GO:0030017//sarcomere	GO:0005198//structural molecule activity;GO:0017111//nucleoside-triphosphatase activity;GO:0008092//cytoskeletal protein binding;GO:0032559	GO:0006941//striated muscle contraction;GO:0009605//response to external stimulus;GO:0040007//growth;GO:0060415;GO:0043501//skeletal muscle adaptation;GO:0030048//actin filament-based movement;GO:0012501//programmed cell death;GO:0048747//muscle fiber development;GO:0030239//myofibril assembly;GO:0009207;GO:0007015//actin filament organization;GO:0010038//response to metal ion;GO:0009790//embryo development;GO:0009725//response to hormone stimulus;GO:0003015//heart process	"gi|4501881|ref|NP_001091.1|/0/actin, alpha skeletal muscle [Homo sapiens]"
gnl|UG|Ssc#S58306712	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa serine/threonine-protein kinase PAK 1-like (LOC100525766), mRNA /cds=p(201,1835) /gb=XM_003129684 /gi=311263557 /ug=Ssc.2530 /len=3077"	GO:0030427//site of polarized growth;GO:0043005//neuron projection;GO:0005626//insoluble fraction;GO:0005635//nuclear envelope;GO:0031674//I band;GO:0044291;GO:0005924//cell-substrate adherens junction	GO:0019900//kinase binding;GO:0032559;GO:0004702//receptor signaling protein serine/threonine kinase activity	GO:0007172//signal complex assembly;GO:0032868//response to insulin stimulus;GO:0048858//cell projection morphogenesis;GO:0050851//antigen receptor-mediated signaling pathway;GO:0031175//neuron projection development;GO:0043406//positive regulation of MAP kinase activity;GO:0007243//intracellular protein kinase cascade;GO:0001934//positive regulation of protein phosphorylation;GO:0006935//chemotaxis;GO:0048741//skeletal muscle fiber development;GO:0030036//actin cytoskeleton organization;GO:0006950//response to stress;GO:0012501//programmed cell death;GO:0031294	gi|311263558|ref|XP_003129732.1|/0/PREDICTED: serine/threonine-protein kinase PAK 1-like [Sus scrofa]
gnl|UG|Ssc#S58311588	17	4.89	0	0	13	3.91	"PREDICTED: Sus scrofa anaphase promoting complex subunit 1 (ANAPC1), mRNA /cds=p(1,4761) /gb=XM_003124813 /gi=311251961 /ug=Ssc.22606 /len=5016"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0000152//nuclear ubiquitin ligase complex	GO:0005488//binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0007050//cell cycle arrest;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	gi|311251962|ref|XP_003124861.1|/0/PREDICTED: anaphase-promoting complex subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S58311946	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa 28S ribosomal protein S17, mitochondrial-like (LOC100521127), mRNA /cds=p(1,675) /gb=XM_003124463 /gi=311251215 /ug=Ssc.54716 /len=1138"	GO:0000314//organellar small ribosomal subunit;GO:0043231//intracellular membrane-bounded organelle	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|311251216|ref|XP_003124511.1|/5.95654e-124/PREDICTED: 28S ribosomal protein S17, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S18384560	22	6.33	37	10.58	13	3.91	"935339 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK464351 /gi=40835632 /ug=Ssc.8318 /len=870"	-	-	-	gi|90080425|dbj|BAE89694.1|/5.14202e-07/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S58314151	21	6.05	15	4.29	15	4.51	"PREDICTED: Sus scrofa protein BAT2-like 1-like (LOC100511912), mRNA /cds=p(1,4791) /gb=XM_003122258 /gi=311246673 /ug=Ssc.6362 /len=8830"	-	GO:0005488//binding	-	gi|311246674|ref|XP_003122306.1|/0/PREDICTED: protein BAT2-like 1-like [Sus scrofa]
gnl|UG|Ssc#S46879868	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa mannosidase, alpha, class 1A, member 2 (MAN1A2), mRNA /cds=p(352,2277) /gb=XM_001927622 /gi=311254502 /ug=Ssc.27265 /len=2277"	GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0012505//endomembrane system	GO:0046872//metal ion binding;GO:0015924	GO:0048856//anatomical structure development;GO:0032501//multicellular organismal process;GO:0006487//protein N-linked glycosylation	"gi|311254503|ref|XP_001927657.2|/0/PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [Sus scrofa]"
gnl|UG|Ssc#S58307362	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa circadian locomoter output cycles protein kaput-like (LOC100524323), mRNA /cds=p(39,956) /gb=XM_003129038 /gi=311262237 /ug=Ssc.88045 /len=956"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0004468//lysine N-acetyltransferase activity;GO:0060089;GO:0001071//nucleic acid binding transcription factor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0009416//response to light stimulus;GO:0048511//rhythmic process;GO:0023052//signaling	gi|311262238|ref|XP_003129086.1|/8.64561e-115/PREDICTED: circadian locomoter output cycles protein kaput-like [Sus scrofa]
gnl|UG|Ssc#S58313224	449	129.27	325	92.9	74	22.24	"PREDICTED: Sus scrofa heterogeneous nuclear ribonucleoprotein M-like (LOC100514153), mRNA /cds=p(19,2094) /gb=XM_003123165 /gi=311248605 /ug=Ssc.10538 /len=2353"	GO:0005681//spliceosomal complex;GO:0016604//nuclear body;GO:0016021//integral to membrane;GO:0034399//nuclear periphery	GO:0003676//nucleic acid binding;GO:0005515//protein binding	"GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|311248606|ref|XP_003123213.1|/0/PREDICTED: heterogeneous nuclear ribonucleoprotein M-like [Sus scrofa]
gnl|UG|Ssc#S58312590	25	7.2	10	2.86	27	8.11	"PREDICTED: Sus scrofa peptidylglycine alpha-amidating monooxygenase, transcript variant 2 (PAM), mRNA /cds=p(363,3281) /gb=XM_003123807 /gi=311249899 /ug=Ssc.6988 /len=4239"	GO:0031224//intrinsic to membrane;GO:0030133//transport vesicle	"GO:0046914//transition metal ion binding;GO:0019842//vitamin binding;GO:0016715//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen;GO:0016842"	GO:0043412;GO:0044237//cellular metabolic process	gi|311249900|ref|XP_003123855.1|/0/PREDICTED: peptidyl-glycine alpha-amidating monooxygenase-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35170408	2	0.58	3	0.86	2	0.6	"Sus scrofa mRNA, clone:OVRM10083F12, expressed in ovary /gb=AK235453 /gi=115549431 /ug=Ssc.18670 /len=2433"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0012502//induction of programmed cell death	gi|73964890|ref|XP_849471.1|/4.7315e-120/PREDICTED: similar to transcriptional regulator protein isoform 2 [Canis familiaris]
gnl|UG|Ssc#S58310949	376	108.25	1150	328.73	314	94.37	"PREDICTED: Sus scrofa cytochrome c1, heme protein, mitochondrial-like (LOC100525869), mRNA /cds=p(47,1027) /gb=XM_003125443 /gi=311253272 /ug=Ssc.886 /len=1231"	GO:0019866//organelle inner membrane;GO:0044459//plasma membrane part;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0009055//electron carrier activity;GO:0005506//iron ion binding	GO:0051234//establishment of localization;GO:0043434//response to peptide hormone stimulus;GO:0022900//electron transport chain	"gi|311253273|ref|XP_003125491.1|/2.20927e-127/PREDICTED: cytochrome c1, heme protein, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S19542751	11	3.17	8	2.29	4	1.2	"947668 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158847 /gi=46173277 /ug=Ssc.27458 /len=897"	GO:0044424//intracellular part	-	GO:0010720//positive regulation of cell development;GO:0007243//intracellular protein kinase cascade;GO:0043066//negative regulation of apoptosis	gi|301786629|ref|XP_002928728.1|/8.40807e-109/PREDICTED: fas apoptotic inhibitory molecule 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40216963	4	1.15	2	0.57	0	0	"rpldo0134_a3.y1 ldo Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW311870 /gi=182886935 /ug=Ssc.68540 /len=466"	GO:0000785//chromatin;GO:0070603//SWI/SNF-type complex;GO:0000794//condensed nuclear chromosome;GO:0044444//cytoplasmic part	"GO:0003916//DNA topoisomerase activity;GO:0019901//protein kinase binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0032559;GO:0042623//ATPase activity, coupled"	"GO:0006351//transcription, DNA-dependent;GO:0007131//reciprocal meiotic recombination;GO:0071780//mitotic cell cycle G2/M transition checkpoint;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0007420//brain development;GO:0007059//chromosome segregation;GO:0006260//DNA replication"	gi|301782147|ref|XP_002926491.1|/2.33127e-83/PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S6047660	6	1.73	3	0.86	9	2.7	"376456 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BI347053 /gi=15040342 /ti=470952812 /ug=Ssc.48638 /len=573"	GO:0005626//insoluble fraction;GO:0016020//membrane	GO:0004714//transmembrane receptor protein tyrosine kinase activity	GO:0048869;GO:0048731;GO:0006935//chemotaxis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|296490380|gb|DAA32493.1|/1.46068e-99/neuropilin 2 isoform 3 [Bos taurus]
gnl|UG|Ssc#S58307189	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa inturned planar cell polarity effector homolog (Drosophila) (INTU), mRNA /cds=p(1,2880) /gb=XM_003129208 /gi=311262587 /ug=Ssc.88438 /len=2880"	-	-	-	gi|311262588|ref|XP_003129256.1|/0/PREDICTED: PDZ domain-containing protein 6-like [Sus scrofa]
gnl|UG|Ssc#S58312847	96	27.64	121	34.59	72	21.64	"PREDICTED: Sus scrofa yjeF N-terminal domain-containing protein 3-like (LOC100514276), mRNA /cds=p(99,1052) /gb=XM_003123556 /gi=311249372 /ug=Ssc.2029 /len=1052"	-	-	-	gi|311249373|ref|XP_003123604.1|/0/PREDICTED: yjeF N-terminal domain-containing protein 3-like [Sus scrofa]
gnl|UG|Ssc#S55318435	786	226.29	4482	1281.17	1657	497.97	"Sus scrofa mRNA, clone:MLN010077B11, expressed in mesenteric lymph nodes /gb=AK346931 /gi=288786449 /ug=Ssc.53716 /len=1123"	GO:0015935//small ribosomal subunit;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0006810//transport;GO:0031016//pancreas development;GO:0048522;GO:0030099//myeloid cell differentiation;GO:0042254//ribosome biogenesis;GO:0009605//response to external stimulus	gi|73948285|ref|XP_533657.2|/1.15234e-79/PREDICTED: similar to ribosomal protein S19 [Canis familiaris]
gnl|UG|Ssc#S35168048	24	6.91	43	12.29	54	16.23	"Sus scrofa mRNA, clone:THY010064A08, expressed in thymus /gb=AK239106 /gi=115551642 /ug=Ssc.3674 /len=1450"	-	-	-	-
gnl|UG|Ssc#S58311152	0	0	4	1.14	2	0.6	"PREDICTED: Sus scrofa protein FAM98A-like (LOC100511253), mRNA /cds=p(64,1626) /gb=XM_003125249 /gi=311252846 /ug=Ssc.7350 /len=4075"	-	-	-	gi|149050651|gb|EDM02824.1|/4.26927e-164/similar to RIKEN cDNA 2810405J04 [Rattus norvegicus]
gnl|UG|Ssc#S46877739	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa retinoic acid receptor beta (LOC396710), mRNA /cds=p(1,1347) /gb=XM_001926828 /gi=311268592 /ug=Ssc.15830 /len=2109"	-	-	-	-
gnl|UG|Ssc#S55326401	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10108A12, expressed in ovary /gb=AK348250 /gi=288778425 /ug=Ssc.82856 /len=3430"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0031406//carboxylic acid binding;GO:0032559;GO:0043169//cation binding;GO:0003723//RNA binding;GO:0004091//carboxylesterase activity;GO:0004812//aminoacyl-tRNA ligase activity	GO:0006984//ER-nucleus signaling pathway;GO:0008544//epidermis development;GO:0006418//tRNA aminoacylation for protein translation;GO:0008033//tRNA processing;GO:0001101//response to acid;GO:0021695//cerebellar cortex development;GO:0006986//response to unfolded protein;GO:0043066//negative regulation of apoptosis;GO:0050905//neuromuscular process	gi|149699352|ref|XP_001501062.1|/0/PREDICTED: similar to LOC510933 protein [Equus caballus]
gnl|UG|Ssc#S58312926	4	1.15	5	1.43	2	0.6	"PREDICTED: Sus scrofa epidermal growth factor receptor substrate 15-like 1-like (LOC100514037), mRNA /cds=p(1,3129) /gb=XM_003123481 /gi=311249210 /ug=Ssc.18701 /len=3601"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0046872//metal ion binding;GO:0004871//signal transducer activity	GO:0016192//vesicle-mediated transport;GO:0007173//epidermal growth factor receptor signaling pathway	gi|311249211|ref|XP_003123529.1|/0/PREDICTED: epidermal growth factor receptor substrate 15-like 1-like [Sus scrofa]
gnl|UG|Ssc#S58302911	0	0	0	0	0	0	"PREDICTED: Sus scrofa rap guanine nucleotide exchange factor 4-like (LOC100511786), mRNA /cds=p(1,2805) /gb=XM_003133488 /gi=311272645 /ug=Ssc.93750 /len=2805"	GO:0031513//nonmotile primary cilium;GO:0005626//insoluble fraction;GO:0030425//dendrite;GO:0043234//protein complex;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part;GO:0045202//synapse	GO:0016208//AMP binding;GO:0005083//small GTPase regulator activity;GO:0031267//small GTPase binding;GO:0019887//protein kinase regulator activity	GO:0007166//cell surface receptor linked signaling pathway;GO:0015980//energy derivation by oxidation of organic compounds;GO:0007599//hemostasis;GO:0014909//smooth muscle cell migration;GO:0010975//regulation of neuron projection development;GO:0019935//cyclic-nucleotide-mediated signaling;GO:0006887//exocytosis;GO:0006468//protein phosphorylation;GO:0030073//insulin secretion;GO:0009966//regulation of signal transduction;GO:0050804//regulation of synaptic transmission;GO:0019222//regulation of metabolic process	gi|311272646|ref|XP_003133536.1|/0/PREDICTED: rap guanine nucleotide exchange factor 4-like [Sus scrofa]
gnl|UG|Ssc#S55327619	27	7.77	25	7.15	27	8.11	"Sus scrofa ATPase, Na+/K+ transporting, alpha 3 polypeptide (ATP1A3), mRNA /cds=p(12,3056) /gb=NM_001171753 /gi=284795271 /ug=Ssc.47512 /len=3066"	GO:0043005//neuron projection;GO:0043231//intracellular membrane-bounded organelle;GO:0005887//integral to plasma membrane	GO:0008556//potassium-transporting ATPase activity;GO:0032559;GO:0043169//cation binding	"GO:0042221//response to chemical stimulus;GO:0007626//locomotory behavior;GO:0007611//learning or memory;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0007632//visual behavior;GO:0009207;GO:0009206;GO:0007215//glutamate signaling pathway"	gi|301777151|ref|XP_002924002.1|/0/PREDICTED: sodium/potassium-transporting ATPase subunit alpha-3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58300861	27	7.77	15	4.29	32	9.62	"PREDICTED: Sus scrofa gamma-tubulin complex component 2-like (LOC100154072), mRNA /cds=p(1,2721) /gb=XM_003135533 /gi=311277289 /ug=Ssc.16386 /len=2818"	-	-	-	-
gnl|UG|Ssc#S35166948	2	0.58	9	2.57	3	0.9	"Sus scrofa mRNA, clone:THY010099C11, expressed in thymus /gb=AK239385 /gi=115552791 /ug=Ssc.9732 /len=2038"	GO:0031981//nuclear lumen	-	GO:0042254//ribosome biogenesis	gi|311267597|ref|XP_003131644.1|/0/PREDICTED: u3 small nucleolar RNA-associated protein 18 homolog [Sus scrofa]
gnl|UG|Ssc#S58307281	5	1.44	2	0.57	8	2.4	"PREDICTED: Sus scrofa cyclin I, transcript variant 1 (CCNI), mRNA /cds=p(605,1738) /gb=XM_003129097 /gi=311262399 /ug=Ssc.16429 /len=3337"	-	-	-	-
gnl|UG|Ssc#S58314361	19	5.47	26	7.43	11	3.31	"PREDICTED: Sus scrofa tomoregulin-1-like, transcript variant 2 (LOC100513775), mRNA /cds=p(170,1534) /gb=XM_003122040 /gi=311246118 /ug=Ssc.24298 /len=2571"	GO:0031224//intrinsic to membrane	-	GO:0032501//multicellular organismal process	gi|311246119|ref|XP_003122088.1|/0/PREDICTED: tomoregulin-1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S23691046	17	4.89	2	0.57	8	2.4	"1097022 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN102145 /gi=59774921 /ug=Ssc.70058 /len=866"	GO:0043232;GO:0044444//cytoplasmic part	GO:0008092//cytoskeletal protein binding;GO:0032559	-	"gi|198282109|ref|NP_001098794.1|/3.85944e-148/twinfilin, actin-binding protein, homolog 2 [Bos taurus]"
gnl|UG|Ssc#S18357189	0	0	2	0.57	0	0	"907611 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK452023 /gi=40799237 /ug=Ssc.79681 /len=859"	-	-	-	-
gnl|UG|Ssc#S58309426	14	4.03	4	1.14	22	6.61	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase AMFR-like (LOC100516197), mRNA /cds=p(16,627) /gb=XM_003126972 /gi=311257233 /ug=Ssc.10833 /len=1042"	GO:0043005//neuron projection;GO:0016021//integral to membrane;GO:0044297//cell body;GO:0031227//intrinsic to endoplasmic reticulum membrane;GO:0005624//membrane fraction;GO:0030427//site of polarized growth	GO:0004871//signal transducer activity;GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0006461//protein complex assembly;GO:0016567//protein ubiquitination;GO:0006984//ER-nucleus signaling pathway	gi|311257234|ref|XP_003127020.1|/4.45975e-99/PREDICTED: e3 ubiquitin-protein ligase AMFR-like [Sus scrofa]
gnl|UG|Ssc#S40358887	234	67.37	326	93.19	247	74.23	"rnje11c_o11.y1 nje Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW453494 /gi=182709818 /ug=Ssc.69060 /len=515"	-	-	-	-
gnl|UG|Ssc#S21573280	0	0	0	0	0	0	"UMC-pd10en2-003-c09 Endometrium gilt D10 of estrous cycle pd10en Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO986278 /gi=51345545 /ug=Ssc.86514 /len=343"	GO:0030054//cell junction;GO:0044424//intracellular part	GO:0030695//GTPase regulator activity;GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0005515//protein binding;GO:0032559	GO:0030036//actin cytoskeleton organization;GO:0009966//regulation of signal transduction;GO:0006464//protein modification process	gi|292622954|ref|XP_696317.4|/2.88241e-21/PREDICTED: serine/threonine-protein kinase MRCK alpha-like [Danio rerio]
gnl|UG|Ssc#S58304871	12	3.45	4	1.14	5	1.5	"PREDICTED: Sus scrofa puromycin sensitive aminopeptidase (LOC414413), mRNA /cds=p(221,2848) /gb=XM_003131527 /gi=311267445 /ug=Ssc.17108 /len=4206"	-	-	-	-
gnl|UG|Ssc#S35173369	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:AMP010076H12, expressed in alveolar macrophage /gb=AK230985 /gi=115546466 /ug=Ssc.85338 /len=2231"	-	GO:0005488//binding	GO:0009987//cellular process;GO:0050789//regulation of biological process	gi|293362390|ref|XP_233945.5|/3.84699e-159/PREDICTED: SH3 domain protein 1B isoform 3 [Rattus norvegicus]
gnl|UG|Ssc#S58309892	3	0.86	7	2	5	1.5	"PREDICTED: Sus scrofa polyhomeotic-like protein 1-like (LOC100155344), mRNA /cds=p(1,3009) /gb=XM_003126495 /gi=311256216 /ug=Ssc.27349 /len=3891"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0032501//multicellular organismal process	gi|311256217|ref|XP_003126543.1|/0/PREDICTED: LOW QUALITY PROTEIN: polyhomeotic-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58310584	0	0	0	0	0	0	"PREDICTED: Sus scrofa neurogenic locus notch homolog protein 2-like (LOC100520559), partial mRNA /cds=p(1,7109) /gb=XM_003125816 /gi=311254469 /ug=Ssc.38845 /len=7109"	GO:0031981//nuclear lumen;GO:0044431//Golgi apparatus part;GO:0016021//integral to membrane;GO:0044432//endoplasmic reticulum part	GO:0004871//signal transducer activity;GO:0003704//specific RNA polymerase II transcription factor activity;GO:0046872//metal ion binding	"GO:0006351//transcription, DNA-dependent;GO:0007166//cell surface receptor linked signaling pathway;GO:0009611//response to wounding;GO:0040007//growth;GO:0046578//regulation of Ras protein signal transduction;GO:0048534;GO:0045165//cell fate commitment;GO:0008283//cell proliferation;GO:0035108//limb morphogenesis;GO:0044267//cellular protein metabolic process;GO:0009855//determination of bilateral symmetry;GO:0002009//morphogenesis of an epithelium;GO:0022402//cell cycle process;GO:0012502//induction of programmed cell death;GO:0043066//negative regulation of apoptosis"	"gi|311254470|ref|XP_003125864.1|/0/PREDICTED: neurogenic locus notch homolog protein 2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S18273818	0	0	0	0	0	0	"BP170309 full-length enriched swine cDNA library, adult uterus Sus scrofa cDNA clone UTR010024B10 5', mRNA sequence /clone=UTR010024B10 /clone_end=5' /gb=BP170309 /gi=40419782 /ug=Ssc.84052 /len=818"	GO:0030529//ribonucleoprotein complex	GO:0003723//RNA binding	GO:0006412//translation	gi|301789201|ref|XP_002930020.1|/4.17596e-125/PREDICTED: translational activator GCN1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58311218	6	1.73	0	0	3	0.9	"PREDICTED: Sus scrofa leucine-rich PPR motif-containing protein, mitochondrial-like (LOC100512225), mRNA /cds=p(6,1721) /gb=XM_003125183 /gi=311252712 /ug=Ssc.9150 /len=2033"	GO:0000228//nuclear chromosome;GO:0031965//nuclear membrane;GO:0019866//organelle inner membrane;GO:0005759//mitochondrial matrix	GO:0003779//actin binding;GO:0015631//tubulin binding;GO:0043566//structure-specific DNA binding	"GO:0050658//RNA transport;GO:0034643//establishment of mitochondrion localization, microtubule-mediated"	"gi|311252713|ref|XP_003125231.1|/0/PREDICTED: leucine-rich PPR motif-containing protein, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S55320417	156	44.91	61	17.44	95	28.55	"Sus scrofa mRNA, clone:LVR010040B10, expressed in liver /gb=AK345871 /gi=288784455 /ug=Ssc.21716 /len=1469"	GO:0008287//protein serine/threonine phosphatase complex;GO:0030425//dendrite;GO:0035097//histone methyltransferase complex;GO:0043025//neuronal cell body;GO:0044444//cytoplasmic part	GO:0004721//phosphoprotein phosphatase activity;GO:0043169//cation binding;GO:0019888//protein phosphatase regulator activity	GO:0005980//glycogen catabolic process;GO:0006412//translation;GO:0001763//morphogenesis of a branching structure;GO:0005978//glycogen biosynthetic process;GO:0007126//meiosis;GO:0030323//respiratory tube development;GO:0006464//protein modification process;GO:0019222//regulation of metabolic process;GO:0006641//triglyceride metabolic process	gi|4506003|ref|NP_002699.1|/0/serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform 1 [Homo sapiens]
gnl|UG|Ssc#S23699449	2	0.58	5	1.43	0	0	"1108253 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN110552 /gi=59788725 /ug=Ssc.63286 /len=780"	"GO:0015629//actin cytoskeleton;GO:0070461//SAGA-type complex;GO:0000775//chromosome, centromeric region;GO:0030017//sarcomere"	GO:0003712//transcription cofactor activity;GO:0004468//lysine N-acetyltransferase activity;GO:0016538//cyclin-dependent protein kinase regulator activity;GO:0019900//kinase binding	"GO:0032868//response to insulin stimulus;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006474//N-terminal protein amino acid acetylation;GO:0006352//transcription initiation, DNA-dependent;GO:0008283//cell proliferation;GO:0022402//cell cycle process;GO:0051704;GO:0016573//histone acetylation"	"gi|296228183|ref|XP_002759743.1|/7.74657e-126/PREDICTED: histone acetyltransferase KAT2B, partial [Callithrix jacchus]"
gnl|UG|Ssc#S46879242	2	0.58	2	0.57	8	2.4	"PREDICTED: Sus scrofa early endosome antigen 1 (EEA1), mRNA /cds=p(177,4409) /gb=XM_001926355 /gi=311256712 /ug=Ssc.4155 /len=4409"	GO:0005626//insoluble fraction;GO:0019898//extrinsic to membrane;GO:0043234//protein complex;GO:0005769//early endosome	GO:0046914//transition metal ion binding;GO:0035091//phosphatidylinositol binding;GO:0042802//identical protein binding	GO:0006944//cellular membrane fusion;GO:0016197//endosome transport	gi|194037681|ref|XP_001926390.1|/0/PREDICTED: early endosome antigen 1 [Sus scrofa]
gnl|UG|Ssc#S55322307	0	0	3	0.86	2	0.6	"Sus scrofa mRNA, clone:DCI010078D03, expressed in dendritic cells (immature) /gb=AK344576 /gi=288782565 /ug=Ssc.48050 /len=1564"	-	-	-	gi|194038773|ref|XP_001927764.1|/9.68038e-166/PREDICTED: hypothetical protein LOC100153150 [Sus scrofa]
gnl|UG|Ssc#S58304801	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa MBT domain-containing protein 1-like (LOC100518331), mRNA /cds=p(1,747) /gb=XM_003131598 /gi=311267592 /ug=Ssc.64231 /len=747"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	"GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|311267593|ref|XP_003131646.1|/8.50206e-111/PREDICTED: MBT domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58304198	155	44.63	169	48.31	87	26.15	"PREDICTED: Sus scrofa WD repeat-containing protein 6-like (LOC100511348), mRNA /cds=p(1,2874) /gb=XM_003132208 /gi=311268882 /ug=Ssc.35533 /len=3572"	GO:0000267//cell fraction;GO:0032991//macromolecular complex;GO:0044424//intracellular part	GO:0005515//protein binding	GO:0008283//cell proliferation;GO:0022402//cell cycle process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|311268883|ref|XP_003132256.1|/0/PREDICTED: WD repeat-containing protein 6-like [Sus scrofa]
gnl|UG|Ssc#S58301793	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa protein LCHN-like (LOC100513325), mRNA /cds=p(1,1371) /gb=XM_003134603 /gi=311275255 /ug=Ssc.44002 /len=1961"	-	-	-	gi|311275256|ref|XP_003134651.1|/0/PREDICTED: LOW QUALITY PROTEIN: protein LCHN-like [Sus scrofa]
gnl|UG|Ssc#S35171967	57	16.41	246	70.32	41	12.32	"Sus scrofa mRNA, clone:OVRM10021F11, expressed in ovary /gb=AK234844 /gi=115547868 /ug=Ssc.49836 /len=3203"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427;GO:0000267//cell fraction;GO:0016020//membrane	GO:0046872//metal ion binding;GO:0004197//cysteine-type endopeptidase activity;GO:0046983//protein dimerization activity	GO:0000768//syncytium formation by plasma membrane fusion;GO:0016485//protein processing;GO:0001701//in utero embryonic development;GO:0006950//response to stress	gi|154147607|ref|NP_001093658.1|/0/calpain-2 catalytic subunit [Sus scrofa]
gnl|UG|Ssc#S18384607	0	0	0	0	3	0.9	"935730 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK464702 /gi=40835983 /ug=Ssc.24764 /len=857"	-	-	-	-
gnl|UG|Ssc#S46880505	6	1.73	3	0.86	0	0	"PREDICTED: Sus scrofa ras-related protein Rab-8B-like (LOC100153972), mRNA /cds=p(114,494) /gb=XM_001929029 /gi=311244616 /ug=Ssc.35291 /len=1154"	GO:0043231//intracellular membrane-bounded organelle;GO:0031982//vesicle;GO:0044444//cytoplasmic part;GO:0016020//membrane;GO:0030427//site of polarized growth	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0019904//protein domain specific binding	GO:0035556//intracellular signal transduction;GO:0030030//cell projection organization;GO:0009207;GO:0046887//positive regulation of hormone secretion	gi|296483236|gb|DAA25351.1|/5.56019e-85/ras-related protein Rab-8B [Bos taurus]
gnl|UG|Ssc#S23700437	0	0	0	0	2	0.6	"1110672 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN111540 /gi=59790206 /ug=Ssc.9257 /len=856"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0046914//transition metal ion binding;GO:0018024//histone-lysine N-methyltransferase activity;GO:0005515//protein binding	GO:0034968//histone lysine methylation;GO:0006305;GO:0018022//peptidyl-lysine methylation;GO:0007275//multicellular organismal development	"gi|301781500|ref|XP_002926180.1|/1.17244e-48/PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific 5-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58311862	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa rho GTPase-activating protein 17-like (LOC100521615), mRNA /cds=p(1,2901) /gb=XM_003124539 /gi=311251385 /ug=Ssc.2431 /len=3774"	GO:0030054//cell junction;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0008047//enzyme activator activity	GO:0035556//intracellular signal transduction;GO:0006887//exocytosis;GO:0030036//actin cytoskeleton organization;GO:0009966//regulation of signal transduction	gi|311251386|ref|XP_003124587.1|/0/PREDICTED: rho GTPase-activating protein 17-like [Sus scrofa]
gnl|UG|Ssc#S58314058	6	1.73	0	0	3	0.9	"PREDICTED: Sus scrofa cofactor of BRCA1 (COBRA1), mRNA /cds=p(1,1743) /gb=XM_003122342 /gi=311246905 /ug=Ssc.4220 /len=2272"	GO:0031981//nuclear lumen	GO:0005488//binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|311246906|ref|XP_003122390.1|/0/PREDICTED: negative elongation factor B-like [Sus scrofa]
gnl|UG|Ssc#S26716845	123	35.41	95	27.16	64	19.23	"AJ952929 KN404_1 Sus scrofa cDNA clone C0007744g06 3', mRNA sequence /clone=C0007744g06 /clone_end=3' /gb=AJ952929 /gi=74369745 /ug=Ssc.43695 /len=892"	-	-	-	gi|74200663|dbj|BAE24726.1|/1.94013e-25/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S58300889	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa trimethyllysine dioxygenase, mitochondrial-like (LOC100515702), mRNA /cds=p(114,1379) /gb=XM_003135511 /gi=311277230 /ug=Ssc.21090 /len=2269"	GO:0044429//mitochondrial part	"GO:0046914//transition metal ion binding;GO:0019842//vitamin binding;GO:0016706//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	GO:0006578//betaine biosynthetic process	"gi|311277231|ref|XP_003135559.1|/0/PREDICTED: trimethyllysine dioxygenase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S18546944	48	13.82	23	6.57	43	12.92	"BX915595 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0030.a.22 5prim, mRNA sequence /clone=scan0030.a.22 /clone_end=5' /gb=BX915595 /gi=90244808 /ug=Ssc.43194 /len=1007"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0005515//protein binding;GO:0005198//structural molecule activity	GO:0007005//mitochondrion organization;GO:0010467//gene expression	"gi|311263047|ref|XP_003129479.1|/7.98386e-76/PREDICTED: 39S ribosomal protein L17, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58310128	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa coenzyme Q10 homolog A (S. cerevisiae), transcript variant 1 (COQ10A), mRNA /cds=p(208,939) /gb=XM_003126267 /gi=311255676 /ug=Ssc.28473 /len=1583"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|311255677|ref|XP_003126315.1|/5.85906e-118/PREDICTED: coenzyme Q-binding protein COQ10 homolog A, mitochondrial isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S35165412	84	24.18	20	5.72	88	26.45	"Sus scrofa mRNA, clone:UTR010031H01, expressed in uterus /gb=AK240109 /gi=115554314 /ug=Ssc.1675 /len=925"	GO:0005743//mitochondrial inner membrane;GO:0005758//mitochondrial intermembrane space	GO:0046914//transition metal ion binding	GO:0050954//sensory perception of mechanical stimulus;GO:0006612//protein targeting to membrane	gi|109122841|ref|XP_001098008.1|/1.12369e-39/PREDICTED: mitochondrial import inner membrane translocase subunit Tim13-like [Macaca mulatta]
gnl|UG|Ssc#S58303126	8	2.3	2	0.57	2	0.6	"PREDICTED: Sus scrofa R3H domain containing 1 (R3HDM1), mRNA /cds=p(407,3517) /gb=XM_003133267 /gi=311272138 /ug=Ssc.7396 /len=4516"	-	-	-	gi|311272139|ref|XP_003133315.1|/0/PREDICTED: r3H domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46876071	14	4.03	2	0.57	5	1.5	"PREDICTED: Sus scrofa ESF1 homolog (LOC100155396), mRNA /cds=p(108,1958) /gb=XM_001926068 /gi=311274388 /ug=Ssc.24145 /len=1985"	GO:0031981//nuclear lumen	-	GO:0010467//gene expression	gi|311274389|ref|XP_001926103.2|/0/PREDICTED: ESF1 homolog [Sus scrofa]
gnl|UG|Ssc#S58313561	0	0	0	0	0	0	"PREDICTED: Sus scrofa peroxisomal membrane protein PEX16-like (LOC100517211), mRNA /cds=p(70,1083) /gb=XM_003122832 /gi=311247926 /ug=Ssc.17015 /len=1176"	-	-	-	-
gnl|UG|Ssc#S35170581	9	2.59	7	2	8	2.4	"Sus scrofa mRNA, clone:OVRM10055H08, expressed in ovary /gb=AK235178 /gi=115549258 /ug=Ssc.8656 /len=1633"	GO:0031513//nonmotile primary cilium;GO:0031234//extrinsic to internal side of plasma membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0031701//angiotensin receptor binding	GO:0015980//energy derivation by oxidation of organic compounds;GO:0007599//hemostasis;GO:0007267//cell-cell signaling;GO:0010658;GO:0033762//response to glucagon stimulus;GO:0009207;GO:0051480//cytosolic calcium ion homeostasis;GO:0007264//small GTPase mediated signal transduction;GO:0048856//anatomical structure development;GO:0001666//response to hypoxia;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0001775//cell activation;GO:0007606//sensory perception of chemical stimulus	"gi|148683063|gb|EDL15010.1|/0/guanine nucleotide binding protein, beta 1, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S58308463	1659	477.63	1760	503.09	1315	395.19	"PREDICTED: Sus scrofa plasminogen activator inhibitor 1 RNA-binding protein-like, transcript variant 3 (LOC100518613), mRNA /cds=p(113,1336) /gb=XM_003127936 /gi=311259198 /ug=Ssc.54061 /len=4034"	GO:0016020//membrane;GO:0044424//intracellular part	GO:0003729//mRNA binding	GO:0050789//regulation of biological process	"gi|119626895|gb|EAX06490.1|/8.54279e-149/SERPINE1 mRNA binding protein 1, isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S55319871	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:THY010105E12, expressed in thymus /gb=AK351894 /gi=288785013 /ug=Ssc.25258 /len=1673"	-	-	-	-
gnl|UG|Ssc#S55325268	220	63.34	125	35.73	94	28.25	"Sus scrofa mRNA, clone:PTG010059F06, expressed in pituitary gland /gb=AK349383 /gi=288779558 /ug=Ssc.63925 /len=1843"	GO:0031981//nuclear lumen;GO:0070603//SWI/SNF-type complex	GO:0003712//transcription cofactor activity;GO:0051427	"GO:0006629//lipid metabolic process;GO:0006355//regulation of transcription, DNA-dependent;GO:0009887//organ morphogenesis;GO:0030154//cell differentiation;GO:0006325//chromatin organization;GO:0051098//regulation of binding"	"gi|73978700|ref|XP_532764.2|/0/PREDICTED: similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 isoform 1 isoform 1 [Canis familiaris]"
gnl|UG|Ssc#S46880167	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa leucine rich repeat containing 8 family, member C (LRRC8C), mRNA /cds=p(1,2412) /gb=XM_001929205 /gi=311254815 /ug=Ssc.39412 /len=2555"	GO:0031224//intrinsic to membrane;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311254816|ref|XP_001929240.2|/0/PREDICTED: leucine-rich repeat-containing protein 8C [Sus scrofa]
gnl|UG|Ssc#S43509679	21	6.05	8	2.29	26	7.81	"Sus scrofa VAMP (vesicle-associated membrane protein)-associated protein B and C (VAPB), mRNA /cds=p(339,1070) /gb=NM_001123213 /gi=178056622 /ug=Ssc.17599 /len=2365"	GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0042802//identical protein binding;GO:0046983//protein dimerization activity;GO:0015631//tubulin binding	GO:0051704;GO:0006643//membrane lipid metabolic process;GO:0045069//regulation of viral genome replication;GO:0006984//ER-nucleus signaling pathway	gi|178056623|ref|NP_001116685.1|/1.51766e-123/vesicle-associated membrane protein-associated protein B [Sus scrofa]
gnl|UG|Ssc#S17517980	0	0	0	0	2	0.6	"BX672549 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0034.f.05 3prim, mRNA sequence /clone=scac0034.f.05 /clone_end=3' /gb=BX672549 /gi=90234796 /ug=Ssc.5026 /len=903"	GO:0044424//intracellular part	GO:0046872//metal ion binding;GO:0016462//pyrophosphatase activity	GO:0071543;GO:0015958;GO:0007154//cell communication	"gi|93279783|pdb|2FVV|A/6.53583e-77/Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1"
gnl|UG|Ssc#S58313963	17	4.89	2	0.57	21	6.31	"PREDICTED: Sus scrofa choline kinase alpha-like (LOC100524478), mRNA /cds=p(1,1887) /gb=XM_003122447 /gi=311247101 /ug=Ssc.2085 /len=3005"	GO:0044424//intracellular part	GO:0043169//cation binding;GO:0060089;GO:0042802//identical protein binding;GO:0004091//carboxylesterase activity;GO:0016301//kinase activity;GO:0032559	GO:0006656//phosphatidylcholine biosynthetic process;GO:0006796//phosphate metabolic process;GO:0023052//signaling;GO:0010876;GO:0046335//ethanolamine biosynthetic process	gi|311247102|ref|XP_003122495.1|/0/PREDICTED: choline kinase alpha-like [Sus scrofa]
gnl|UG|Ssc#S58312924	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein C19orf44-like (LOC100514217), mRNA /cds=p(57,1820) /gb=XM_003123482 /gi=311249214 /ug=Ssc.60171 /len=1820"	-	-	-	gi|311249215|ref|XP_003123530.1|/0/PREDICTED: uncharacterized protein C19orf44-like [Sus scrofa]
gnl|UG|Ssc#S58307575	9	2.59	4	1.14	3	0.9	"PREDICTED: Sus scrofa G protein-coupled receptor kinase 4-like (LOC100519668), mRNA /cds=p(1,1737) /gb=XM_003128829 /gi=311261803 /ug=Ssc.24942 /len=1896"	GO:0005737//cytoplasm	GO:0004871//signal transducer activity;GO:0004674//protein serine/threonine kinase activity;GO:0000166//nucleotide binding	GO:0007186//G-protein coupled receptor protein signaling pathway	gi|311261804|ref|XP_003128877.1|/0/PREDICTED: LOW QUALITY PROTEIN: G protein-coupled receptor kinase 4-like [Sus scrofa]
gnl|UG|Ssc#S58309501	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa zinc finger protein 821-like (LOC100515083), mRNA /cds=p(1,1113) /gb=XM_003126899 /gi=311257078 /ug=Ssc.6439 /len=1426"	GO:0005622//intracellular	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|311257079|ref|XP_003126947.1|/4.73522e-156/PREDICTED: zinc finger protein 821-like [Sus scrofa]
gnl|UG|Ssc#S35165598	16	4.61	17	4.86	19	5.71	"Sus scrofa mRNA, clone:LVRM10124H06, expressed in liver /gb=AK233338 /gi=115554128 /ug=Ssc.12475 /len=1412"	GO:0005624//membrane fraction;GO:0044424//intracellular part	GO:0042802//identical protein binding;GO:0046872//metal ion binding;GO:0016791//phosphatase activity	GO:0048545//response to steroid hormone stimulus;GO:0006563//L-serine metabolic process;GO:0009991//response to extracellular stimulus;GO:0006796//phosphate metabolic process	gi|262263179|dbj|BAI48092.1|/1.7896e-123/phosphoserine phosphatase [Sus scrofa]
gnl|UG|Ssc#S35167812	22	6.33	7	2	8	2.4	"Sus scrofa mRNA, clone:OVRM10182G02, expressed in ovary /gb=AK236334 /gi=115551927 /ug=Ssc.55569 /len=1577"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	-	gi|156120154|ref|NP_001095295.1|/1.73893e-146/negative elongation factor E [Sus scrofa]
gnl|UG|Ssc#S58303061	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa CDKN2A-interacting protein-like (LOC100513762), mRNA /cds=p(105,1856) /gb=XM_003133332 /gi=311272289 /ug=Ssc.45319 /len=2640"	GO:0044452	GO:0005515//protein binding	GO:0010608//posttranscriptional regulation of gene expression;GO:0016049//cell growth;GO:0007165//signal transduction	gi|311272290|ref|XP_003133380.1|/3.79811e-179/PREDICTED: CDKN2A-interacting protein-like [Sus scrofa]
gnl|UG|Ssc#S35165573	6	1.73	5	1.43	12	3.61	"Sus scrofa mRNA, clone:LVRM10130A10, expressed in liver /gb=AK233363 /gi=115554153 /ug=Ssc.53769 /len=1358"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0006396//RNA processing	gi|178056236|ref|NP_001116660.1|/0/RNA-binding protein 4B [Sus scrofa]
gnl|UG|Ssc#S23694781	0	0	2	0.57	0	0	"1102214 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN105884 /gi=59781147 /ug=Ssc.29137 /len=843"	GO:0031224//intrinsic to membrane;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0008238//exopeptidase activity	-	gi|119916801|ref|XP_001251030.1|/1.89808e-152/PREDICTED: nodal modulator 2 isoform 1 [Bos taurus]
gnl|UG|Ssc#S23759681	2	0.58	2	0.57	8	2.4	"1116955 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN117300 /gi=59811560 /ug=Ssc.25846 /len=757"	-	-	-	gi|296475274|gb|DAA17389.1|/1.1276e-25/phosphofurin acidic cluster sorting protein 1-like [Bos taurus]
gnl|UG|Ssc#S55322611	0	0	0	0	0	0	"Sus scrofa mRNA, clone:DCI010060B04, expressed in dendritic cells (immature) /gb=AK344472 /gi=288782261 /ug=Ssc.15914 /len=2597"	-	-	-	-
gnl|UG|Ssc#S55272994	44	12.67	7	2	32	9.62	"FS663853 full-length enriched swine cDNA library, adult colon Sus scrofa cDNA clone CLNT10094C01 5', mRNA sequence /clone=CLNT10094C01 /clone_end=5' /gb=FS663853 /gi=288271251 /ug=Ssc.43925 /len=842"	-	-	-	-
gnl|UG|Ssc#S23213507	12	3.45	5	1.43	15	4.51	"Sus scrofa clone Clu_12724.scr.msk.p1.Contig2, mRNA sequence /gb=AY609470 /gi=52351065 /ug=Ssc.82578 /len=1089"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0032446//protein modification by small protein conjugation	gi|311266156|ref|XP_003130977.1|/3.24303e-47/PREDICTED: ubiquitin-fold modifier 1-like [Sus scrofa]
gnl|UG|Ssc#S58307654	0	0	0	0	0	0	"PREDICTED: Sus scrofa dynein, cytoplasmic 1, heavy chain 1 (DYNC1H1), mRNA /cds=p(1,5766) /gb=XM_003128733 /gi=311261625 /ug=Ssc.42610 /len=5766"	GO:0030286//dynein complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0003774//motor activity;GO:0016887//ATPase activity;GO:0032559	GO:0000278//mitotic cell cycle;GO:0022402//cell cycle process;GO:0009207;GO:0007017//microtubule-based process;GO:0051234//establishment of localization;GO:0022618//ribonucleoprotein complex assembly	gi|311261626|ref|XP_003128781.1|/0/PREDICTED: LOW QUALITY PROTEIN: cytoplasmic dynein 1 heavy chain 1 [Sus scrofa]
gnl|UG|Ssc#S55325385	0	0	0	0	4	1.2	"Sus scrofa mRNA, clone:PTG010035B10, expressed in pituitary gland /gb=AK349266 /gi=288779441 /ug=Ssc.43127 /len=1693"	GO:0043232	-	GO:0010171//body morphogenesis;GO:0010927	gi|311257998|ref|XP_003127385.1|/4.91239e-86/PREDICTED: protein fuzzy homolog [Sus scrofa]
gnl|UG|Ssc#S35172325	122	35.12	389	111.2	274	82.34	"Sus scrofa mRNA, clone:TCH010007D03, expressed in trachea /gb=AK237892 /gi=115547510 /ug=Ssc.1294 /len=1402"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016815//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles"	GO:0008152//metabolic process	"gi|311253976|ref|XP_001927783.2|/0/PREDICTED: nitrilase homolog 1 isoform 2, partial [Sus scrofa]"
gnl|UG|Ssc#S40309992	12	3.45	3	0.86	12	3.61	"rmgp001_p18.y1 mgp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW404599 /gi=182719281 /ug=Ssc.68864 /len=605"	-	-	-	-
gnl|UG|Ssc#S58308716	4	1.15	5	1.43	4	1.2	"PREDICTED: Sus scrofa endothelin converting enzyme 1 (ECE1), mRNA /cds=p(1,2316) /gb=XM_003127683 /gi=311258679 /ug=Ssc.16166 /len=2753"	-	-	-	-
gnl|UG|Ssc#S50189909	15	4.32	0	0	25	7.51	"susfleck_LM_N_15_H12 SUSFLECK Loin Muscle Normalized Sus scrofa cDNA clone 15_H12, mRNA sequence /clone=15_H12 /gb=FD621745 /gi=221005505 /ug=Ssc.93004 /len=419"	-	-	-	-
gnl|UG|Ssc#S46875757	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa CG16865 CG16865-PA, transcript variant 1 (LOC100152936), mRNA /cds=p(56,724) /gb=XM_001927356 /gi=194044919 /ug=Ssc.5273 /len=1094"	-	GO:0005488//binding	-	gi|74733589|sp|Q9H5V9.1|CX056_HUMAN/1.88675e-103/RecName: Full=UPF0428 protein CXorf56
gnl|UG|Ssc#S58314757	0	0	6	1.72	0	0	"PREDICTED: Sus scrofa ankyrin repeat and SOCS box protein 7-like (LOC100519936), mRNA /cds=p(668,1624) /gb=XM_003121646 /gi=311245101 /ug=Ssc.75690 /len=1624"	-	-	GO:0007165//signal transduction	gi|38176283|ref|NP_937886.1|/0/ankyrin repeat and SOCS box protein 7 isoform 2 [Homo sapiens]
gnl|UG|Ssc#S58309513	6	1.73	0	0	0	0	"PREDICTED: Sus scrofa protein VAC14 homolog (LOC100513600), mRNA /cds=p(272,2452) /gb=XM_003126892 /gi=311257054 /ug=Ssc.49880 /len=2452"	GO:0043232;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311257055|ref|XP_003126940.1|/0/PREDICTED: protein VAC14 homolog [Sus scrofa]
gnl|UG|Ssc#S55320768	16	4.61	18	5.15	18	5.41	"Sus scrofa mRNA, clone:THY010003B09, expressed in thymus /gb=AK351394 /gi=288784104 /ug=Ssc.9413 /len=1572"	GO:0031224//intrinsic to membrane	GO:0060089	GO:0007249//I-kappaB kinase/NF-kappaB cascade	gi|311267125|ref|XP_003131405.1|/7.28723e-145/PREDICTED: transmembrane protein 101-like [Sus scrofa]
gnl|UG|Ssc#S39982778	0	0	3	0.86	0	0	"rebs32c_k8.y1 ebs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW077843 /gi=181277907 /ug=Ssc.66866 /len=463"	-	-	-	-
gnl|UG|Ssc#S46877416	4	1.15	0	0	12	3.61	"PREDICTED: Sus scrofa ectonucleoside triphosphate diphosphohydrolase 4 (ENTPD4), mRNA /cds=p(93,1901) /gb=XM_001926801 /gi=311270358 /ug=Ssc.22256 /len=2304"	GO:0005774//vacuolar membrane;GO:0031982//vesicle;GO:0031228//intrinsic to Golgi membrane	GO:0017110//nucleoside-diphosphatase activity	GO:0009195	gi|311270359|ref|XP_001926836.2|/0/PREDICTED: ectonucleoside triphosphate diphosphohydrolase 4 [Sus scrofa]
gnl|UG|Ssc#S18359204	3	0.86	20	5.72	2	0.6	"915140 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK454645 /gi=40801859 /ug=Ssc.19186 /len=731"	GO:0030425//dendrite;GO:0015629//actin cytoskeleton;GO:0030017//sarcomere	GO:0046872//metal ion binding;GO:0003774//motor activity;GO:0016887//ATPase activity	GO:0008016//regulation of heart contraction;GO:0055003//cardiac myofibril assembly;GO:0006936//muscle contraction	"gi|311275839|ref|XP_003134933.1|/1.3859e-94/PREDICTED: myosin regulatory light chain 2, atrial isoform-like [Sus scrofa]"
gnl|UG|Ssc#S55834198	3	0.86	2	0.57	0	0	"Sus scrofa ral guanine nucleotide dissociation stimulator-like 2 (RGL2), mRNA /cds=p(1,2316) /gb=NM_001184893 /gi=296434320 /ug=Ssc.1941 /len=2929"	-	GO:0005083//small GTPase regulator activity	GO:0007264//small GTPase mediated signal transduction	gi|296434321|ref|NP_001171822.1|/0/ral guanine nucleotide dissociation stimulator-like 2 [Sus scrofa]
gnl|UG|Ssc#S55324944	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:SKNB10020A01, expressed in skin /gb=AK349663 /gi=288779928 /ug=Ssc.73847 /len=1497"	GO:0044424//intracellular part	GO:0008173//RNA methyltransferase activity	GO:0000154//rRNA modification	"gi|311262719|ref|XP_003129321.1|/1.01398e-148/PREDICTED: glutathione S-transferase C-terminal domain-containing protein-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58305814	8	2.3	8	2.29	11	3.31	"PREDICTED: Sus scrofa tumor protein p53 binding protein, 2 (TP53BP2), mRNA /cds=p(320,3727) /gb=XM_003130583 /gi=311265390 /ug=Ssc.9003 /len=4733"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0030674//protein binding, bridging;GO:0019904//protein domain specific binding;GO:0008134//transcription factor binding"	GO:0012502//induction of programmed cell death;GO:0051726//regulation of cell cycle;GO:0023052//signaling	gi|311265391|ref|XP_003130631.1|/0/PREDICTED: apoptosis-stimulating of p53 protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58311702	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa RNA pseudouridylate synthase domain-containing protein 1-like (LOC100524553), mRNA /cds=p(180,1118) /gb=XM_003124698 /gi=311251718 /ug=Ssc.2915 /len=1922"	-	-	-	gi|311251719|ref|XP_003124746.1|/1.80705e-172/PREDICTED: RNA pseudouridylate synthase domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55327574	218	62.76	74	21.15	238	71.53	"Sus scrofa MYST histone acetyltransferase 2 (MYST2) mRNA, complete cds /cds=p(144,1979) /gb=GU373686 /gi=285818425 /ug=Ssc.2666 /len=3591"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0004468//lysine N-acetyltransferase activity;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0043967//histone H4 acetylation;GO:0006259//DNA metabolic process;GO:0006351//transcription, DNA-dependent"	gi|114669400|ref|XP_511869.2|/0/PREDICTED: MYST histone acetyltransferase 2 [Pan troglodytes]
gnl|UG|Ssc#S20116694	5	1.44	7	2	18	5.41	"Sus scrofa potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 (KCNN4), mRNA /cds=p(132,1412) /gb=NM_214018 /gi=47522857 /ug=Ssc.85 /len=1980"	GO:0005887//integral to plasma membrane	GO:0005227//calcium activated cation channel activity;GO:0005515//protein binding	GO:0019725//cellular homeostasis;GO:0048522;GO:0007589//body fluid secretion;GO:0015914//phospholipid transport;GO:0034220//ion transmembrane transport;GO:0030001//metal ion transport;GO:0006950//response to stress	gi|47522858|ref|NP_999183.1|/0/intermediate conductance calcium-activated potassium channel protein 4 [Sus scrofa]
gnl|UG|Ssc#S58311625	9	2.59	18	5.15	14	4.21	"PREDICTED: Sus scrofa serine/arginine repetitive matrix protein 2-like (LOC100511011), mRNA /cds=p(1,1821) /gb=XM_003124777 /gi=311251882 /ug=Ssc.13255 /len=1821"	GO:0005681//spliceosomal complex;GO:0016604//nuclear body	GO:0019904//protein domain specific binding	GO:0000377	gi|311251883|ref|XP_003124825.1|/1.5126e-112/PREDICTED: serine/arginine repetitive matrix protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58313564	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa cAMP responsive element binding protein 3-like 1 (CREB3L1), mRNA /cds=p(1,1563) /gb=XM_003122829 /gi=311247920 /ug=Ssc.76961 /len=1635"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	"GO:0006351//transcription, DNA-dependent;GO:0006950//response to stress"	gi|311247921|ref|XP_003122877.1|/0/PREDICTED: cyclic AMP-responsive element-binding protein 3-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55319695	0	0	3	0.86	6	1.8	"Sus scrofa mRNA, clone:LVRM10097D02, expressed in liver /gb=AK346196 /gi=288785189 /ug=Ssc.20728 /len=1725"	GO:0031091//platelet alpha granule;GO:0044421//extracellular region part	GO:0004866//endopeptidase inhibitor activity;GO:0005488//binding	"GO:0007599//hemostasis;GO:0001867//complement activation, lectin pathway;GO:0006887//exocytosis;GO:0001775//cell activation;GO:0003013;GO:0010466//negative regulation of peptidase activity"	gi|178056710|ref|NP_001116666.1|/0/plasma protease C1 inhibitor [Sus scrofa]
gnl|UG|Ssc#S46877179	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa SH3 and PX domains 2A (SH3PXD2A), mRNA /cds=p(1,3063) /gb=XM_001926897 /gi=311271800 /ug=Ssc.94576 /len=3063"	GO:0044459//plasma membrane part;GO:0015629//actin cytoskeleton	GO:0005543//phospholipid binding	GO:0009987//cellular process	gi|311271801|ref|XP_001926932.2|/0/PREDICTED: SH3 and PX domain-containing protein 2A [Sus scrofa]
gnl|UG|Ssc#S58309361	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa zinc finger protein 792 (ZNF792), mRNA /cds=p(1,1827) /gb=XM_003127038 /gi=311257365 /ug=Ssc.94211 /len=2324"	GO:0005622//intracellular	GO:0046872//metal ion binding	-	gi|311257366|ref|XP_003127086.1|/0/PREDICTED: zinc finger protein 792-like [Sus scrofa]
gnl|UG|Ssc#S55327570	2	0.58	0	0	0	0	"Sus scrofa ubiquinol-cytochrome c reductase complex chaperone (UQCC) mRNA, complete cds /cds=p(20,919) /gb=GU373690 /gi=285818433 /ug=Ssc.3277 /len=2226"	-	-	-	-
gnl|UG|Ssc#S46876769	27	7.77	35	10	18	5.41	"PREDICTED: Sus scrofa zinc finger SWIM domain-containing protein KIAA0913-like (LOC100154207), mRNA /cds=p(270,5795) /gb=XM_001928170 /gi=311271395 /ug=Ssc.3687 /len=6069"	-	GO:0046914//transition metal ion binding	-	gi|194042820|ref|XP_001928205.1|/0/PREDICTED: zinc finger SWIM domain-containing protein KIAA0913-like [Sus scrofa]
gnl|UG|Ssc#S46877838	23	6.62	6	1.72	10	3.01	"PREDICTED: Sus scrofa integrator complex subunit 6, transcript variant 1 (INTS6), mRNA /cds=p(1,2679) /gb=XM_001927680 /gi=311266207 /ug=Ssc.28108 /len=3231"	"GO:0005856//cytoskeleton;GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0004872//receptor activity;GO:0005488//binding	GO:0016073	gi|194040592|ref|XP_001927715.1|/0/PREDICTED: integrator complex subunit 6 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55324032	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:SPL010005F11, expressed in spleen /gb=AK350176 /gi=288780840 /ug=Ssc.115 /len=1591"	GO:0031090//organelle membrane;GO:0031981//nuclear lumen;GO:0042598//vesicular fraction;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part;GO:0044421//extracellular region part	"GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;GO:0005506//iron ion binding;GO:0060089;GO:0004620//phospholipase activity;GO:0042802//identical protein binding"	"GO:0033007;GO:0006954//inflammatory response;GO:0042108//positive regulation of cytokine biosynthetic process;GO:0045767//regulation of anti-apoptosis;GO:0008284//positive regulation of cell proliferation;GO:0007584//response to nutrient;GO:0050673//epithelial cell proliferation;GO:0048872//homeostasis of number of cells;GO:0045765//regulation of angiogenesis;GO:0014805//smooth muscle adaptation;GO:0043392//negative regulation of DNA binding;GO:0014070//response to organic cyclic compound;GO:0042311//vasodilation;GO:0019637//organophosphate metabolic process;GO:0000302//response to reactive oxygen species;GO:0055114//oxidation-reduction process;GO:0008629//induction of apoptosis by intracellular signals;GO:0008285//negative regulation of cell proliferation;GO:0006810//transport;GO:0048545//response to steroid hormone stimulus;GO:0002719;GO:0034381//plasma lipoprotein particle clearance;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0051259//protein oligomerization;GO:0006875//cellular metal ion homeostasis;GO:0034599//cellular response to oxidative stress;GO:0006787;GO:0006355//regulation of transcription, DNA-dependent"	gi|51592105|ref|NP_001004027.1|/1.70558e-152/heme oxygenase 1 [Sus scrofa]
gnl|UG|Ssc#S58313759	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa transmembrane protein 216-like (LOC100519467), mRNA /cds=p(175,624) /gb=XM_003122637 /gi=311247527 /ug=Ssc.26449 /len=1176"	GO:0031224//intrinsic to membrane	-	-	gi|311247528|ref|XP_003122685.1|/6.14263e-79/PREDICTED: transmembrane protein 216-like [Sus scrofa]
gnl|UG|Ssc#S58311615	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa bicaudal D homolog 2 (Drosophila) (BICD2), mRNA /cds=p(1,2511) /gb=XM_003124784 /gi=311251904 /ug=Ssc.80818 /len=2511"	GO:0031982//vesicle;GO:0043232;GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0005083//small GTPase regulator activity;GO:0005488//binding	GO:0019222//regulation of metabolic process;GO:0034453//microtubule anchoring;GO:0072384	gi|311251905|ref|XP_003124832.1|/0/PREDICTED: protein bicaudal D homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S35165259	29	8.35	28	8	15	4.51	"Sus scrofa mRNA, clone:LVRM10156C01, expressed in liver /gb=AK233477 /gi=115554467 /ug=Ssc.37849 /len=1443"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0032589//neuron projection membrane	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding;GO:0003702//RNA polymerase II transcription factor activity	GO:0019752//carboxylic acid metabolic process;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0033554//cellular response to stress;GO:0006006//glucose metabolic process	gi|310769834|gb|ADP21474.1|/6.28937e-148/activating transcription factor 4 [Sus scrofa]
gnl|UG|Ssc#S35166708	19	5.47	3	0.86	7	2.1	"Sus scrofa mRNA, clone:THY010116G03, expressed in thymus /gb=AK239617 /gi=115553031 /ug=Ssc.26249 /len=1532"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0009987//cellular process	gi|296483334|gb|DAA25449.1|/2.66355e-152/cyclin-D1-binding protein 1 [Bos taurus]
gnl|UG|Ssc#S35166504	10	2.88	28	8	6	1.8	"Sus scrofa mRNA, clone:LVRM10070H05, expressed in liver /gb=AK233032 /gi=115553234 /ug=Ssc.53959 /len=1874"	GO:0031224//intrinsic to membrane	-	-	gi|114658307|ref|XP_523227.2|/1.82752e-137/PREDICTED: similar to Tetraspanin 3 [Pan troglodytes]
gnl|UG|Ssc#S58308049	3	0.86	2	0.57	6	1.8	"PREDICTED: Sus scrofa synaptic Ras GTPase activating protein 1 (SYNGAP1), mRNA /cds=p(1,4038) /gb=XM_003128342 /gi=311260244 /ug=Ssc.19048 /len=4038"	GO:0005626//insoluble fraction;GO:0044424//intracellular part;GO:0030425//dendrite;GO:0009898//internal side of plasma membrane	GO:0019904//protein domain specific binding;GO:0005099//Ras GTPase activator activity	GO:0048168//regulation of neuronal synaptic plasticity;GO:0007632//visual behavior;GO:0031175//neuron projection development;GO:0010627//regulation of intracellular protein kinase cascade;GO:0006915//apoptosis;GO:0007172//signal complex assembly;GO:0032313//regulation of Rab GTPase activity;GO:0031345//negative regulation of cell projection organization	gi|311260245|ref|XP_003128390.1|/0/PREDICTED: ras GTPase-activating protein SynGAP-like [Sus scrofa]
gnl|UG|Ssc#S58307874	47	13.53	37	10.58	87	26.15	"PREDICTED: Sus scrofa probable D-tyrosyl-tRNA(Tyr) deacylase 2-like (LOC100522380), mRNA /cds=p(1,681) /gb=XM_003128523 /gi=311260908 /ug=Ssc.60609 /len=863"	GO:0044424//intracellular part	GO:0016787//hydrolase activity	GO:0009063//cellular amino acid catabolic process	gi|311260909|ref|XP_003128571.1|/5.05576e-116/PREDICTED: LOW QUALITY PROTEIN: probable D-tyrosyl-tRNA(Tyr) deacylase 2-like [Sus scrofa]
gnl|UG|Ssc#S35167661	0	0	5	1.43	0	0	"Sus scrofa mRNA, clone:THY010087H12, expressed in thymus /gb=AK239271 /gi=115552078 /ug=Ssc.42998 /len=1271"	-	-	-	-
gnl|UG|Ssc#S42528758	9	2.59	21	6	5	1.5	"Sus scrofa transcriptional intermediary factor-2 isoform 1 (TIF2) mRNA, complete cds, alternatively spliced /cds=p(192,4583) /gb=EU346672 /gi=164523393 /ug=Ssc.35994 /len=7628"	GO:0044456//synapse part;GO:0031981//nuclear lumen;GO:0043005//neuron projection;GO:0044430//cytoskeletal part;GO:0015630//microtubule cytoskeleton;GO:0044297//cell body;GO:0005783//endoplasmic reticulum	GO:0004871//signal transducer activity;GO:0030528//transcription regulator activity;GO:0051427;GO:0010861//thyroid hormone receptor activator activity;GO:0004468//lysine N-acetyltransferase activity;GO:0003676//nucleic acid binding;GO:0019904//protein domain specific binding;GO:0003713//transcription coactivator activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0016570//histone modification;GO:0030518//steroid hormone receptor signaling pathway;GO:0006629//lipid metabolic process;GO:0010469//regulation of receptor activity;GO:0022037//metencephalon development	gi|166796043|ref|NP_001107747.1|/0/nuclear receptor coactivator 2 [Sus scrofa]
gnl|UG|Ssc#S46876271	9	2.59	0	0	0	0	"PREDICTED: Sus scrofa chromosome 2 open reading frame 17 (LOC100156393), mRNA /cds=p(81,1712) /gb=XM_001925566 /gi=311273091 /ug=Ssc.1366 /len=2796"	GO:0031224//intrinsic to membrane	-	-	gi|311273092|ref|XP_001925601.2|/0/PREDICTED: protein FAM134A [Sus scrofa]
gnl|UG|Ssc#S46876809	4	1.15	0	0	6	1.8	"PREDICTED: Sus scrofa probable E3 ubiquitin-protein ligase HERC4-like (LOC100155982), mRNA /cds=p(1,3015) /gb=XM_001924559 /gi=311271278 /ug=Ssc.27529 /len=3471"	GO:0044444//cytoplasmic part	GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination;GO:0048232//male gamete generation;GO:0048869	gi|311271279|ref|XP_001924594.2|/0/PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Sus scrofa]
gnl|UG|Ssc#S40334904	15	4.32	13	3.72	38	11.42	"rnca01b_a21.y1 nca Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW429511 /gi=182807202 /ug=Ssc.1354 /len=635"	GO:0043234//protein complex;GO:0044424//intracellular part	GO:0005515//protein binding	GO:0030099//myeloid cell differentiation;GO:0044267//cellular protein metabolic process;GO:0031647//regulation of protein stability	gi|29135335|ref|NP_803488.1|/5.85171e-32/alpha-hemoglobin-stabilizing protein [Bos taurus]
gnl|UG|Ssc#S46876653	3	0.86	4	1.14	0	0	"PREDICTED: Sus scrofa ras-related protein Rab-35-like (LOC100151805), mRNA /cds=p(123,728) /gb=XM_001928092 /gi=311270738 /ug=Ssc.17391 /len=3020"	-	-	-	gi|296213080|ref|XP_002753117.1|/3.68761e-101/PREDICTED: ras-related protein Rab-35-like [Callithrix jacchus]
gnl|UG|Ssc#S35174283	8	2.3	4	1.14	11	3.31	"Sus scrofa mRNA, clone:AMP010022F12, expressed in alveolar macrophage /gb=AK230667 /gi=115545552 /ug=Ssc.82351 /len=1892"	-	GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|311249885|ref|XP_003123860.1|/0/PREDICTED: serine/threonine-protein kinase RIO2-like [Sus scrofa]
gnl|UG|Ssc#S58306557	14	4.03	4	1.14	15	4.51	"PREDICTED: Sus scrofa layilin-like (LOC100513941), mRNA /cds=p(169,1299) /gb=XM_003129838 /gi=311263874 /ug=Ssc.40924 /len=1793"	GO:0031224//intrinsic to membrane;GO:0005924//cell-substrate adherens junction;GO:0031252//cell leading edge	GO:0005539//glycosaminoglycan binding	-	gi|311263875|ref|XP_003129886.1|/0/PREDICTED: layilin-like [Sus scrofa]
gnl|UG|Ssc#S35173577	19	5.47	23	6.57	28	8.41	"Sus scrofa mRNA, clone:UTR010083G08, expressed in uterus /gb=AK240496 /gi=115546258 /ug=Ssc.25183 /len=1137"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0019904//protein domain specific binding	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0002526//acute inflammatory response;GO:0016055//Wnt receptor signaling pathway;GO:0043393//regulation of protein binding;GO:0002763//positive regulation of myeloid leukocyte differentiation;GO:0043392//negative regulation of DNA binding;GO:0008285//negative regulation of cell proliferation;GO:0060260;GO:0003002//regionalization;GO:0048754//branching morphogenesis of a tube	"gi|290563194|ref|NP_001166859.1|/1.44853e-37/catenin, beta-interacting protein 1 [Rattus norvegicus]"
gnl|UG|Ssc#S58304596	13	3.74	33	9.43	15	4.51	"PREDICTED: Sus scrofa carboxypeptidase D (CPD), mRNA /cds=p(60,4184) /gb=XM_003131786 /gi=311268018 /ug=Ssc.21508 /len=6758"	GO:0044431//Golgi apparatus part;GO:0042598//vesicular fraction;GO:0031224//intrinsic to membrane	GO:0008235//metalloexopeptidase activity;GO:0046914//transition metal ion binding;GO:0004180//carboxypeptidase activity	GO:0070669//response to interleukin-2;GO:0019538//protein metabolic process	gi|311268019|ref|XP_003131834.1|/0/PREDICTED: carboxypeptidase D-like [Sus scrofa]
gnl|UG|Ssc#S35167277	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:OVRM10195H02, expressed in ovary /gb=AK236467 /gi=115552462 /ug=Ssc.83388 /len=2294"	-	-	-	-
gnl|UG|Ssc#S55320137	18	5.18	6	1.72	9	2.7	"Sus scrofa mRNA, clone:LVR010073H06, expressed in liver /gb=AK345953 /gi=288784735 /ug=Ssc.87535 /len=1177"	-	-	-	gi|73992436|ref|XP_534420.2|/1.39406e-14/PREDICTED: similar to DNA topoisomerase I [Canis familiaris]
gnl|UG|Ssc#S46880599	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa tubulin, gamma complex associated protein 4 (TUBGCP4), mRNA /cds=p(1,2001) /gb=XM_001926011 /gi=311244881 /ug=Ssc.45368 /len=2886"	GO:0000931//gamma-tubulin large complex;GO:0005819//spindle	GO:0005198//structural molecule activity	GO:0065003;GO:0000226//microtubule cytoskeleton organization;GO:0022402//cell cycle process	gi|311244882|ref|XP_001926046.2|/0/PREDICTED: gamma-tubulin complex component 4 [Sus scrofa]
gnl|UG|Ssc#S35168322	10	2.88	21	6	13	3.91	"Sus scrofa mRNA, clone:OVRM10147G12, expressed in ovary /gb=AK236046 /gi=115551368 /ug=Ssc.18323 /len=2348"	GO:0044444//cytoplasmic part	GO:0005488//binding	"GO:0006413//translational initiation;GO:0050794//regulation of cellular process;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|296487902|gb|DAA30015.1|/0/eukaryotic translation initiation factor 4B [Bos taurus]
gnl|UG|Ssc#S35172876	2	0.58	0	0	4	1.2	"Sus scrofa mRNA, clone:UTR010105H04, expressed in uterus /gb=AK240605 /gi=115546959 /ug=Ssc.38733 /len=2508"	GO:0043231//intracellular membrane-bounded organelle	GO:0016301//kinase activity;GO:0019901//protein kinase binding;GO:0055103;GO:0032559;GO:0019887//protein kinase regulator activity	GO:0014909//smooth muscle cell migration;GO:0002832;GO:0033673//negative regulation of kinase activity;GO:0031398//positive regulation of protein ubiquitination;GO:0043392//negative regulation of DNA binding;GO:0008285//negative regulation of cell proliferation;GO:0009966//regulation of signal transduction;GO:0031331;GO:0002237//response to molecule of bacterial origin;GO:0000165//MAPKKK cascade	gi|26329013|dbj|BAC28245.1|/1.30652e-80/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S46879195	15	4.32	12	3.43	9	2.7	"PREDICTED: Sus scrofa FGFR1 oncogene partner 2 homolog (LOC100157490), mRNA /cds=p(255,1016) /gb=XM_001924597 /gi=311256015 /ug=Ssc.6594 /len=3306"	GO:0044424//intracellular part	-	GO:0006950//response to stress	gi|194037781|ref|XP_001924632.1|/3.31667e-135/PREDICTED: FGFR1 oncogene partner 2 homolog [Sus scrofa]
gnl|UG|Ssc#S58310571	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa synaptonemal complex protein 1 (SYCP1), mRNA /cds=p(1,2949) /gb=XM_003125829 /gi=311254528 /ug=Ssc.43546 /len=3002"	GO:0000795//synaptonemal complex;GO:0043073//germ cell nucleus	GO:0003676//nucleic acid binding	GO:0006310//DNA recombination;GO:0007129//synapsis;GO:0048232//male gamete generation;GO:0008104//protein localization	gi|311254529|ref|XP_003125877.1|/0/PREDICTED: synaptonemal complex protein 1-like [Sus scrofa]
gnl|UG|Ssc#S39760925	48	13.82	58	16.58	73	21.94	"ramn3539b_p23.y1 amn Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV856203 /gi=178601069 /ug=Ssc.64464 /len=602"	-	-	-	-
gnl|UG|Ssc#S43509763	332	95.58	135	38.59	283	85.05	"Sus scrofa CFL2b variant 1 (CFL2b) mRNA, complete cds /cds=p(64,564) /gb=EU561660 /gi=171905894 /ug=Ssc.7645 /len=3012"	GO:0034399//nuclear periphery;GO:0043232	GO:0008092//cytoskeletal protein binding	-	gi|55640589|ref|XP_509898.1|/1.11594e-89/PREDICTED: similar to cofilin [Pan troglodytes]
gnl|UG|Ssc#S55324939	118	33.97	224	64.03	66	19.83	"Sus scrofa mRNA, clone:SKNB10021A03, expressed in skin /gb=AK349668 /gi=288779933 /ug=Ssc.55931 /len=463"	-	-	-	gi|194238406|ref|XP_001916399.1|/9.9318e-34/PREDICTED: similar to predicted protein [Equus caballus]
gnl|UG|Ssc#S18556121	0	0	0	0	5	1.5	"BX924772 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0018.a.10 5prim, mRNA sequence /clone=scan0018.a.10 /clone_end=5' /gb=BX924772 /gi=90235589 /ug=Ssc.24452 /len=828"	-	-	-	-
gnl|UG|Ssc#S58312585	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa peroxisomal NADH pyrophosphatase NUDT12-like (LOC100512649), mRNA /cds=p(273,1379) /gb=XM_003123816 /gi=311249909 /ug=Ssc.18719 /len=3645"	GO:0042579//microbody	GO:0043169//cation binding;GO:0004551//nucleotide diphosphatase activity	-	gi|311249910|ref|XP_003123864.1|/0/PREDICTED: peroxisomal NADH pyrophosphatase NUDT12-like [Sus scrofa]
gnl|UG|Ssc#S31106026	8	2.3	5	1.43	3	0.9	"1513782 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY409864 /gi=87211167 /ug=Ssc.1442 /len=684"	-	-	-	-
gnl|UG|Ssc#S58308445	6	1.73	0	0	2	0.6	"PREDICTED: Sus scrofa ubiquitin specific peptidase 1 (USP1), mRNA /cds=p(488,2842) /gb=XM_003127953 /gi=311259234 /ug=Ssc.7866 /len=3656"	GO:0031981//nuclear lumen	GO:0005488//binding;GO:0016790//thiolester hydrolase activity;GO:0004175//endopeptidase activity;GO:0019783//small conjugating protein-specific protease activity	GO:0006281//DNA repair;GO:0009416//response to light stimulus;GO:0019941//modification-dependent protein catabolic process;GO:0016579//protein deubiquitination	gi|311259235|ref|XP_003128001.1|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 1-like [Sus scrofa]
gnl|UG|Ssc#S58311639	4	1.15	0	0	6	1.8	"PREDICTED: Sus scrofa uncharacterized protein C16orf59 homolog (LOC100518420), mRNA /cds=p(74,910) /gb=XM_003124741 /gi=311251847 /ug=Ssc.79606 /len=1306"	-	-	-	-
gnl|UG|Ssc#S58307752	0	0	5	1.43	0	0	"PREDICTED: Sus scrofa signal-induced proliferation-associated 1-like protein 1-like (LOC100526117), mRNA /cds=p(410,5824) /gb=XM_003128627 /gi=311261295 /ug=Ssc.24345 /len=6242"	GO:0044430//cytoskeletal part;GO:0005624//membrane fraction;GO:0030425//dendrite;GO:0044459//plasma membrane part	GO:0008047//enzyme activator activity	GO:0032854//positive regulation of Rap GTPase activity;GO:0030036//actin cytoskeleton organization;GO:0048814//regulation of dendrite morphogenesis	gi|311261296|ref|XP_003128675.1|/0/PREDICTED: signal-induced proliferation-associated 1-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35168815	60	17.27	201	57.46	81	24.34	"Sus scrofa mRNA, clone:THY010027E10, expressed in thymus /gb=AK238768 /gi=115550907 /ug=Ssc.31243 /len=1943"	-	-	-	gi|149723994|ref|XP_001503781.1|/1.08975e-07/PREDICTED: similar to Proline-rich protein 11 [Equus caballus]
gnl|UG|Ssc#S55243392	18	5.18	3	0.86	9	2.7	"FS667543 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10047H09 5', mRNA sequence /clone=HTMT10047H09 /clone_end=5' /gb=FS667543 /gi=288232621 /ug=Ssc.81949 /len=839"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0004712//protein serine/threonine/tyrosine kinase activity;GO:0032559	GO:0002224//toll-like receptor signaling pathway;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007264//small GTPase mediated signal transduction;GO:0006935//chemotaxis;GO:0000187//activation of MAPK activity	gi|114326375|ref|NP_001041601.1|/1.0186e-89/dual specificity mitogen-activated protein kinase kinase 2 [Canis lupus familiaris]
gnl|UG|Ssc#S40046817	0	0	0	0	2	0.6	"reru21c_f19.y1 eru Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW141724 /gi=182588073 /ug=Ssc.67317 /len=288"	-	-	-	-
gnl|UG|Ssc#S58315162	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa golgi-associated PDZ and coiled-coil motif containing, transcript variant 2 (GOPC), mRNA /cds=p(192,1583) /gb=XM_003121242 /gi=311244045 /ug=Ssc.2593 /len=3230"	GO:0043005//neuron projection;GO:0044430//cytoskeletal part;GO:0005624//membrane fraction;GO:0012505//endomembrane system;GO:0005798//Golgi-associated vesicle;GO:0044459//plasma membrane part	GO:0030695//GTPase regulator activity;GO:0005515//protein binding	GO:0043002;GO:0008105//asymmetric protein localization;GO:0051259//protein oligomerization;GO:0006997//nucleus organization;GO:0044248//cellular catabolic process	gi|311244046|ref|XP_003121290.1|/0/PREDICTED: Golgi-associated PDZ and coiled-coil motif-containing protein-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S14902206	6	1.73	4	1.14	6	1.8	"jns04_E09.r jns Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CB483206 /gi=29289592 /ug=Ssc.82813 /len=553"	-	-	-	-
gnl|UG|Ssc#S35164644	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:UTR010049F11, expressed in uterus /gb=AK240281 /gi=115555082 /ug=Ssc.30964 /len=1167"	GO:0005856//cytoskeleton;GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0002274;GO:0010035//response to inorganic substance	gi|149721805|ref|XP_001498875.1|/2.69622e-103/PREDICTED: N-myc downstream regulated gene 1 [Equus caballus]
gnl|UG|Ssc#S55321480	3	0.86	2	0.57	0	0	"Sus scrofa mRNA, clone:TES010062A07, expressed in testis /gb=AK351276 /gi=288783392 /ug=Ssc.16564 /len=2427"	-	-	-	-
gnl|UG|Ssc#S58309269	8	2.3	6	1.72	2	0.6	"PREDICTED: Sus scrofa serine/threonine-protein kinase PAK 4-like (LOC100518309), mRNA /cds=p(4,672) /gb=XM_003127126 /gi=311257550 /ug=Ssc.21310 /len=1067"	GO:0043231//intracellular membrane-bounded organelle	GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process;GO:0023052//signaling	gi|301784051|ref|XP_002927445.1|/3.75658e-125/PREDICTED: serine/threonine-protein kinase PAK 4-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58302085	0	0	0	0	10	3.01	"PREDICTED: Sus scrofa DNA replication complex GINS protein PSF1-like (LOC100519176), mRNA /cds=p(128,718) /gb=XM_003134310 /gi=311274519 /ug=Ssc.5401 /len=1665"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0001832//blastocyst growth;GO:0006261//DNA-dependent DNA replication;GO:0051320	gi|311274520|ref|XP_003134358.1|/2.15708e-110/PREDICTED: DNA replication complex GINS protein PSF1-like [Sus scrofa]
gnl|UG|Ssc#S58309026	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100510910 (LOC100510910), mRNA /cds=p(34,837) /gb=XM_003127367 /gi=311258047 /ug=Ssc.47083 /len=1006"	-	-	-	gi|311258048|ref|XP_003127415.1|/9.04889e-110/PREDICTED: hypothetical protein LOC100510910 [Sus scrofa]
gnl|UG|Ssc#S55297409	0	0	2	0.57	0	0	"FS703201 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010081A02 5', mRNA sequence /clone=PST010081A02 /clone_end=5' /gb=FS703201 /gi=288294917 /ug=Ssc.85924 /len=884"	-	-	-	gi|297465128|ref|XP_002703676.1|/3.58181e-72/PREDICTED: plakophilin 4 isoform 2 [Bos taurus]
gnl|UG|Ssc#S18332300	2	0.58	0	0	0	0	"BP459366 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRM10194E12 5', mRNA sequence /clone=OVRM10194E12 /clone_end=5' /gb=BP459366 /gi=40474383 /ug=Ssc.73942 /len=747"	GO:0031981//nuclear lumen	GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|296207498|ref|XP_002750726.1|/1.2485e-138/PREDICTED: serine/threonine-protein kinase 40 [Callithrix jacchus]
gnl|UG|Ssc#S19537026	5	1.44	16	4.57	3	0.9	"940236 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN153146 /gi=46167576 /ug=Ssc.82331 /len=860"	-	-	-	-
gnl|UG|Ssc#S20936465	3	0.86	0	0	0	0	"AJ648188 CSEQRAN19 Sus scrofa cDNA clone C0003263_O11, mRNA sequence /clone=C0003263_O11 /gb=AJ648188 /gi=49325033 /ug=Ssc.85548 /len=463"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0044431//Golgi apparatus part;GO:0031224//intrinsic to membrane;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity;GO:0005488//binding	GO:0001501//skeletal system development;GO:0035107//appendage morphogenesis;GO:0006518//peptide metabolic process;GO:0001999//renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure;GO:0048513//organ development;GO:0001816//cytokine production;GO:0007154//cell communication;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0003002//regionalization;GO:0019058//viral infectious cycle;GO:0016486//peptide hormone processing;GO:0048565//digestive tract development;GO:0035295//tube development	gi|293356456|ref|XP_342033.4|/4.88304e-86/PREDICTED: proprotein convertase subtilisin/kexin type 5 [Rattus norvegicus]
gnl|UG|Ssc#S55320883	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LNG010069H01, expressed in lung /gb=AK345604 /gi=288783989 /ug=Ssc.20317 /len=1249"	-	GO:0005515//protein binding	GO:0044260;GO:0080090//regulation of primary metabolic process;GO:0051049//regulation of transport;GO:0031323//regulation of cellular metabolic process;GO:0009966//regulation of signal transduction;GO:0060255;GO:0035556//intracellular signal transduction	gi|194224655|ref|XP_001493004.2|/9.63588e-59/PREDICTED: similar to Lck interacting transmembrane adaptor 1 [Equus caballus]
gnl|UG|Ssc#S46880743	0	0	0	0	0	0	"PREDICTED: Sus scrofa teashirt homolog 1-like (LOC100152487), mRNA /cds=p(1,3663) /gb=XM_001926750 /gi=311245174 /ug=Ssc.28457 /len=4988"	-	-	-	gi|311245175|ref|XP_001926785.2|/0/PREDICTED: teashirt homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S58306481	12	3.45	7	2	15	4.51	"PREDICTED: Sus scrofa B-cell CLL/lymphoma 9-like (BCL9L), mRNA /cds=p(1,4488) /gb=XM_003129916 /gi=311264027 /ug=Ssc.8996 /len=4553"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity	GO:0001837//epithelial to mesenchymal transition;GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|311264028|ref|XP_003129964.1|/0/PREDICTED: b-cell CLL/lymphoma 9-like protein-like [Sus scrofa]
gnl|UG|Ssc#S58313463	5	1.44	11	3.14	8	2.4	"PREDICTED: Sus scrofa general transcription factor IIH, polypeptide 1, 62kDa (GTF2H1), mRNA /cds=p(255,1901) /gb=XM_003122936 /gi=311248122 /ug=Ssc.45063 /len=3060"	GO:0005667//transcription factor complex	"GO:0003702//RNA polymerase II transcription factor activity;GO:0004674//protein serine/threonine kinase activity;GO:0042623//ATPase activity, coupled;GO:0005488//binding"	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006397//mRNA processing;GO:0006352//transcription initiation, DNA-dependent;GO:0006353//transcription termination, DNA-dependent;GO:0006289//nucleotide-excision repair;GO:0051726//regulation of cell cycle;GO:0006354//transcription elongation, DNA-dependent;GO:0045935"	gi|311248123|ref|XP_003122984.1|/0/PREDICTED: general transcription factor IIH subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S46880414	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa inhibitor of Bruton agammaglobulinemia tyrosine kinase (IBTK), mRNA /cds=p(541,4578) /gb=XM_001924870 /gi=311244417 /ug=Ssc.7884 /len=5684"	GO:0031981//nuclear lumen	GO:0004860//protein kinase inhibitor activity;GO:0019900//kinase binding	GO:0006469//negative regulation of protein kinase activity;GO:0051283	gi|311244418|ref|XP_001924905.2|/0/PREDICTED: inhibitor of Bruton tyrosine kinase [Sus scrofa]
gnl|UG|Ssc#S17510525	12	3.45	5	1.43	2	0.6	"BX665551 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0009.e.07 5prim, mRNA sequence /clone=scag0009.e.07 /clone_end=5' /gb=BX665551 /gi=90233924 /ug=Ssc.2406 /len=952"	-	-	-	-
gnl|UG|Ssc#S58311465	26	7.49	34	9.72	9	2.7	"PREDICTED: Sus scrofa charged multivesicular body protein 3-like (LOC100522249), mRNA /cds=p(1,573) /gb=XM_003124963 /gi=311252208 /ug=Ssc.3717 /len=935"	GO:0005770//late endosome	GO:0035091//phosphatidylinositol binding	GO:0007041//lysosomal transport;GO:0016192//vesicle-mediated transport;GO:0032535	gi|311252209|ref|XP_003125011.1|/3.90334e-80/PREDICTED: charged multivesicular body protein 3-like [Sus scrofa]
gnl|UG|Ssc#S55324678	12	3.45	78	22.3	15	4.51	"Sus scrofa mRNA, clone:ADR010053C09, expressed in adrenal gland /gb=AK343378 /gi=288780194 /ug=Ssc.44295 /len=2424"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0016782//transferase activity, transferring sulfur-containing groups"	GO:0005975//carbohydrate metabolic process;GO:0006464//protein modification process	gi|301770287|ref|XP_002920560.1|/0/PREDICTED: uronyl 2-sulfotransferase-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35166084	15	4.32	29	8.29	10	3.01	"Sus scrofa mRNA, clone:UTR010002C09, expressed in uterus /gb=AK239841 /gi=115553654 /ug=Ssc.30925 /len=2265"	-	-	-	-
gnl|UG|Ssc#S35168376	38	10.94	24	6.86	97	29.15	"Sus scrofa mRNA, clone:OVRM10134A11, expressed in ovary /gb=AK235992 /gi=115551314 /ug=Ssc.15899 /len=2802"	-	-	-	-
gnl|UG|Ssc#S58301127	5	1.44	2	0.57	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100513514 (LOC100513514), mRNA /cds=p(1,696) /gb=XM_003135282 /gi=311276693 /ug=Ssc.7039 /len=1055"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0032813//tumor necrosis factor receptor superfamily binding;GO:0030234//enzyme regulator activity	GO:0032501//multicellular organismal process;GO:0008624//induction of apoptosis by extracellular signals;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|311276694|ref|XP_003135330.1|/4.70019e-96/PREDICTED: hypothetical protein LOC100513514 [Sus scrofa]
gnl|UG|Ssc#S55323516	20	5.76	5	1.43	8	2.4	"Sus scrofa mRNA, clone:AMP010094B11, expressed in alveolar macrophages /gb=AK343965 /gi=288781356 /ug=Ssc.1045 /len=2580"	GO:0034708;GO:0008287//protein serine/threonine phosphatase complex;GO:0016585//chromatin remodeling complex	GO:0005488//binding;GO:0018024//histone-lysine N-methyltransferase activity	GO:0034968//histone lysine methylation	gi|74733569|sp|Q9H350.1|TM113_HUMAN/5.59755e-18/RecName: Full=Transmembrane protein 113
gnl|UG|Ssc#S55319290	579	166.7	533	152.36	332	99.77	"Sus scrofa mRNA, clone:LVRM10165A10, expressed in liver /gb=AK346402 /gi=288785594 /ug=Ssc.1720 /len=3682"	GO:0044444//cytoplasmic part	"GO:0043169//cation binding;GO:0016814//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines"	GO:0009112;GO:0009127//purine nucleoside monophosphate biosynthetic process	gi|34147621|ref|NP_631895.1|/0/AMP deaminase 2 isoform 2 [Homo sapiens]
gnl|UG|Ssc#S46881275	29	8.35	0	0	14	4.21	"PREDICTED: Sus scrofa ezrin (EZR), partial mRNA /cds=p(1,1060) /gb=XM_001924233 /gi=311243721 /ug=Ssc.6677 /len=1847"	GO:0005815//microtubule organizing center;GO:0001726//ruffle;GO:0031981//nuclear lumen;GO:0031254//trailing edge;GO:0044459//plasma membrane part;GO:0015629//actin cytoskeleton;GO:0005902//microvillus	GO:0003779//actin binding	GO:0065008;GO:0016337//cell-cell adhesion;GO:0007015//actin filament organization;GO:0006935//chemotaxis;GO:0022406;GO:0061245;GO:0030154//cell differentiation	"gi|311243722|ref|XP_001924268.2|/1.98123e-160/PREDICTED: ezrin, partial [Sus scrofa]"
gnl|UG|Ssc#S55236861	4	1.15	0	0	0	0	"FS641092 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10014A08 5', mRNA sequence /clone=BFLT10014A08 /clone_end=5' /gb=FS641092 /gi=288227546 /ug=Ssc.3322 /len=822"	-	-	-	-
gnl|UG|Ssc#S52535174	3	0.86	0	0	2	0.6	"Sus scrofa F-box protein 9 (FBXO9), mRNA /cds=p(394,1710) /gb=NM_001160297 /gi=237757281 /ug=Ssc.9128 /len=2219"	GO:0043234//protein complex	GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation	gi|62089252|dbj|BAD93070.1|/0/F-box only protein 9 isoform 2 variant [Homo sapiens]
gnl|UG|Ssc#S58315100	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa midasin-like (LOC100525196), mRNA /cds=p(1,954) /gb=XM_003121306 /gi=311244190 /ug=Ssc.2249 /len=2211"	GO:0043231//intracellular membrane-bounded organelle	GO:0017111//nucleoside-triphosphatase activity;GO:0005515//protein binding;GO:0032559	GO:0006461//protein complex assembly;GO:0009207	gi|311244191|ref|XP_003121354.1|/2.61356e-178/PREDICTED: midasin-like [Sus scrofa]
gnl|UG|Ssc#S26723003	0	0	4	1.14	2	0.6	"AJ959087 KN404_2 Sus scrofa cDNA clone C0007753a09 3', mRNA sequence /clone=C0007753a09 /clone_end=3' /gb=AJ959087 /gi=74375903 /ug=Ssc.35874 /len=661"	-	-	-	-
gnl|UG|Ssc#S58301735	5	1.44	2	0.57	3	0.9	"PREDICTED: Sus scrofa exocyst complex component 4 (EXOC4), partial mRNA /cds=p(1,2652) /gb=XM_003134661 /gi=311275374 /ug=Ssc.40589 /len=2675"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0030425//dendrite;GO:0044297//cell body;GO:0044430//cytoskeletal part;GO:0030427//site of polarized growth	GO:0019904//protein domain specific binding	GO:0009967//positive regulation of signal transduction;GO:0051049//regulation of transport;GO:0007267//cell-cell signaling;GO:0007163//establishment or maintenance of cell polarity;GO:0071843;GO:0006887//exocytosis;GO:0010001//glial cell differentiation;GO:0006605//protein targeting	"gi|311275375|ref|XP_003134709.1|/0/PREDICTED: exocyst complex component 4-like, partial [Sus scrofa]"
gnl|UG|Ssc#S17526345	257	73.99	55	15.72	89	26.75	"BX675545 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0032.b.06 3prim, mRNA sequence /clone=scac0032.b.06 /clone_end=3' /gb=BX675545 /gi=90234587 /ug=Ssc.79061 /len=826"	-	-	-	-
gnl|UG|Ssc#S35169636	20	5.76	14	4	8	2.4	"Sus scrofa mRNA, clone:OVRM10103H01, expressed in ovary /gb=AK235682 /gi=115550203 /ug=Ssc.20392 /len=2363"	GO:0043296//apical junction complex;GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0006810//transport;GO:0001881//receptor recycling;GO:0065008;GO:0040011//locomotion;GO:0016337//cell-cell adhesion;GO:0048513//organ development;GO:0000904//cell morphogenesis involved in differentiation;GO:0032319//regulation of Rho GTPase activity	gi|221139746|ref|NP_001137584.1|/0/blood vessel epicardial substance [Sus scrofa]
gnl|UG|Ssc#S35166313	3	0.86	4	1.14	9	2.7	"Sus scrofa mRNA, clone:OVRM10209D07, expressed in ovary /gb=AK236628 /gi=115553425 /ug=Ssc.27425 /len=2030"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0016742//hydroxymethyl-, formyl- and related transferase activity;GO:0042802//identical protein binding;GO:0019238//cyclohydrolase activity"	GO:0009887//organ morphogenesis;GO:0009168//purine ribonucleoside monophosphate biosynthetic process;GO:0009112	gi|195539476|ref|NP_001124208.1|/0/bifunctional purine biosynthesis protein PURH [Sus scrofa]
gnl|UG|Ssc#S55301710	74	21.3	22	6.29	24	7.21	"FS666330 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10029B05 5', mRNA sequence /clone=HTMT10029B05 /clone_end=5' /gb=FS666330 /gi=288304863 /ug=Ssc.21451 /len=848"	GO:0016604//nuclear body;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding;GO:0019904//protein domain specific binding	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	gi|1334149|emb|CAA45875.1|/3.62311e-119/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S27603082	144	41.46	15	4.29	136	40.87	"EST-AR162A08 Porcine Peripheral Blood Cell cDNA library Sus scrofa cDNA clone AR162A08, mRNA sequence /clone=AR162A08 /gb=DV228409 /gi=77597529 /ug=Ssc.69909 /len=694"	GO:0035097//histone methyltransferase complex;GO:0043005//neuron projection;GO:0043292//contractile fiber;GO:0005884//actin filament;GO:0043189//H4/H2A histone acetyltransferase complex	GO:0008092//cytoskeletal protein binding;GO:0019900//kinase binding;GO:0005198//structural molecule activity;GO:0032559	GO:0031032//actomyosin structure organization;GO:0010038//response to metal ion;GO:0006935//chemotaxis;GO:0045216//cell-cell junction organization;GO:0007599//hemostasis	"gi|301792411|ref|XP_002931172.1|/7.78305e-113/PREDICTED: actin, cytoplasmic 2-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58305097	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa membrane-associated ring finger (C3HC4) 10 (MARCH10), mRNA /cds=p(1,2451) /gb=XM_003131302 /gi=311266987 /ug=Ssc.73949 /len=2451"	-	-	-	gi|311266988|ref|XP_003131350.1|/0/PREDICTED: probable E3 ubiquitin-protein ligase MARCH10-like [Sus scrofa]
gnl|UG|Ssc#S46876899	29	8.35	59	16.87	34	10.22	"PREDICTED: Sus scrofa geranylgeranyl pyrophosphate synthase-like (LOC100155232), mRNA /cds=p(224,1126) /gb=XM_001924769 /gi=311271140 /ug=Ssc.45405 /len=2852"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0004659//prenyltransferase activity	GO:0006720//isoprenoid metabolic process;GO:0008203//cholesterol metabolic process	gi|194042553|ref|XP_001924804.1|/6.4032e-172/PREDICTED: geranylgeranyl pyrophosphate synthase-like [Sus scrofa]
gnl|UG|Ssc#S58307222	154	44.34	33	9.43	87	26.15	"PREDICTED: Sus scrofa SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 (SMARCA5), mRNA /cds=p(446,3604) /gb=XM_003129174 /gi=311262518 /ug=Ssc.49881 /len=4933"	GO:0031981//nuclear lumen;GO:0031010;GO:0005657//replication fork	GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0017111//nucleoside-triphosphatase activity;GO:0003676//nucleic acid binding;GO:0032559;GO:0003682//chromatin binding	GO:0007275//multicellular organismal development;GO:0006342//chromatin silencing;GO:0009207;GO:0043486//histone exchange;GO:0006281//DNA repair	gi|311262519|ref|XP_003129222.1|/0/PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [Sus scrofa]
gnl|UG|Ssc#S55319551	357	102.78	204	58.31	183	55	"Sus scrofa mRNA, clone:THY010124H06, expressed in thymus /gb=AK352015 /gi=288785333 /ug=Ssc.1771 /len=2438"	GO:0016604//nuclear body;GO:0034399//nuclear periphery	GO:0003676//nucleic acid binding;GO:0005515//protein binding	"GO:0006396//RNA processing;GO:0006259//DNA metabolic process;GO:0033554//cellular response to stress;GO:0006351//transcription, DNA-dependent"	gi|74141990|dbj|BAE41058.1|/0/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S23212824	2	0.58	4	1.14	0	0	"Sus scrofa clone Clu_89129.scr.msk.p1.Contig1, mRNA sequence /gb=AY610184 /gi=52351754 /ug=Ssc.61130 /len=594"	-	-	-	gi|57044022|ref|XP_544457.1|/1.03013e-82/PREDICTED: similar to Ras-related protein Rab-39A [Canis familiaris]
gnl|UG|Ssc#S55322967	38	10.94	10	2.86	24	7.21	"Sus scrofa mRNA, clone:DCI010006C04, expressed in dendritic cells (immature) /gb=AK344315 /gi=288781905 /ug=Ssc.36486 /len=1587"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0016291//acyl-CoA thioesterase activity	GO:0006732//coenzyme metabolic process	"gi|311276040|ref|XP_003135024.1|/0/PREDICTED: LOW QUALITY PROTEIN: acyl-coenzyme A thioesterase 9, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S46880801	3	0.86	0	0	5	1.5	"PREDICTED: Sus scrofa L-2-hydroxyglutarate dehydrogenase (L2HGDH), mRNA /cds=p(1,1392) /gb=XM_001926818 /gi=194034422 /ug=Ssc.48760 /len=1520"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	"GO:0016614//oxidoreductase activity, acting on CH-OH group of donors"	GO:0019538//protein metabolic process	"gi|194034423|ref|XP_001926853.1|/0/PREDICTED: l-2-hydroxyglutarate dehydrogenase, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S23697486	2	0.58	5	1.43	3	0.9	"1106109 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN108589 /gi=59784647 /ug=Ssc.87077 /len=831"	-	-	-	-
gnl|UG|Ssc#S58303786	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa SUMO1/sentrin specific peptidase 5, transcript variant 1 (SENP5), mRNA /cds=p(297,2555) /gb=XM_003132609 /gi=311269847 /ug=Ssc.61903 /len=2889"	GO:0031981//nuclear lumen	GO:0070011	GO:0019538//protein metabolic process;GO:0009987//cellular process	gi|311269846|ref|XP_003132658.1|/0/PREDICTED: sentrin-specific protease 5-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35168747	7	2.02	0	0	9	2.7	"Sus scrofa mRNA, clone:THY010032C08, expressed in thymus /gb=AK238804 /gi=115550943 /ug=Ssc.78639 /len=2186"	GO:0005875//microtubule associated complex;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0003774//motor activity	GO:0051234//establishment of localization;GO:0007017//microtubule-based process;GO:0022402//cell cycle process	gi|115497348|ref|NP_001069351.1|/0/cytoplasmic dynein 1 intermediate chain 2 [Bos taurus]
gnl|UG|Ssc#S31100746	4	1.15	14	4	4	1.2	"1495928 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY404584 /gi=87205887 /ug=Ssc.88990 /len=646"	-	-	-	-
gnl|UG|Ssc#S31114548	5	1.44	0	0	8	2.4	"1533511 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY418386 /gi=87219689 /ug=Ssc.64044 /len=765"	GO:0043234//protein complex	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006413//translational initiation;GO:0001932//regulation of protein phosphorylation;GO:0051704;GO:0007127//meiosis I;GO:0048232//male gamete generation	"gi|291399356|ref|XP_002716091.1|/7.71507e-123/PREDICTED: eukaryotic translation initiation factor 4 gamma, 3-like [Oryctolagus cuniculus]"
gnl|UG|Ssc#S58302302	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa pre-mRNA-splicing factor SLU7-like (LOC100517791), mRNA /cds=p(141,1901) /gb=XM_003134093 /gi=311274002 /ug=Ssc.83723 /len=2173"	-	-	-	-
gnl|UG|Ssc#S46876729	36	10.36	52	14.86	26	7.81	"PREDICTED: Sus scrofa arginine/serine-rich coiled-coil 2 (RSRC2), mRNA /cds=p(124,1428) /gb=XM_001928903 /gi=311270585 /ug=Ssc.32264 /len=2669"	-	-	-	gi|194042901|ref|XP_001928938.1|/1.89273e-77/PREDICTED: arginine/serine-rich coiled-coil protein 2 [Sus scrofa]
gnl|UG|Ssc#S40076107	0	0	0	0	2	0.6	"rfbs3911b_g19.y1 fbs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW171014 /gi=182608038 /ug=Ssc.17448 /len=602"	-	-	-	-
gnl|UG|Ssc#S35167490	83	23.9	84	24.01	94	28.25	"Sus scrofa mRNA, clone:AMP010009H08, expressed in alveolar macrophage /gb=AK230558 /gi=115552249 /ug=Ssc.10524 /len=3763"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|194039698|ref|XP_001929207.1|/0/PREDICTED: high mobility group protein 20A [Sus scrofa]
gnl|UG|Ssc#S58311921	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa zinc finger protein 646 (ZNF646), mRNA /cds=p(1,5481) /gb=XM_003124475 /gi=311251265 /ug=Ssc.47054 /len=5913"	GO:0005622//intracellular	GO:0046872//metal ion binding	-	gi|311251266|ref|XP_003124523.1|/0/PREDICTED: zinc finger protein 646-like [Sus scrofa]
gnl|UG|Ssc#S35173068	5	1.44	0	0	10	3.01	"Sus scrofa mRNA, clone:SPL010069C07, expressed in spleen /gb=AK237613 /gi=115546767 /ug=Ssc.81647 /len=2099"	GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0008493//tetracycline transporter activity	GO:0015893//drug transport;GO:0015850//organic alcohol transport;GO:0006818//hydrogen transport;GO:0006811//ion transport	gi|302563531|ref|NP_001181213.1|/0/hippocampus abundant transcript-like 1 [Macaca mulatta]
gnl|UG|Ssc#S23701117	0	0	13	3.72	12	3.61	"1111393 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN112220 /gi=59790886 /ug=Ssc.17453 /len=814"	-	-	-	-
gnl|UG|Ssc#S58310597	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa protein inhibitor of activated STAT, 3 (PIAS3), mRNA /cds=p(1,1887) /gb=XM_003125792 /gi=311254430 /ug=Ssc.80173 /len=2810"	-	-	-	gi|311254431|ref|XP_003125840.1|/0/PREDICTED: e3 SUMO-protein ligase PIAS3-like [Sus scrofa]
gnl|UG|Ssc#S58304770	110	31.67	115	32.87	54	16.23	"PREDICTED: Sus scrofa RNA-binding protein Musashi homolog 2-like (LOC100511039), mRNA /cds=p(75,581) /gb=XM_003131628 /gi=311267657 /ug=Ssc.45089 /len=827"	GO:0030529//ribonucleoprotein complex	GO:0008187//poly-pyrimidine tract binding	-	gi|293340339|ref|XP_001081205.2|/1.48204e-85/PREDICTED: Musashi homolog 2-like [Rattus norvegicus]
gnl|UG|Ssc#S35167909	4	1.15	10	2.86	0	0	"Sus scrofa mRNA, clone:OVRM10166G12, expressed in ovary /gb=AK236237 /gi=115551830 /ug=Ssc.41708 /len=1936"	-	-	-	"gi|148666524|gb|EDK98940.1|/0/required for meiotic nuclear division 5 homolog A (S. cerevisiae), isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S46877926	49	14.11	25	7.15	27	8.11	"PREDICTED: Sus scrofa potassium channel tetramerisation domain containing 20 (KCTD20), mRNA /cds=p(125,1384) /gb=XM_001929543 /gi=311260320 /ug=Ssc.55802 /len=2628"	GO:0005887//integral to plasma membrane	GO:0005267//potassium channel activity;GO:0005515//protein binding	GO:0034220//ion transmembrane transport;GO:0030001//metal ion transport	gi|194040406|ref|XP_001929578.1|/0/PREDICTED: BTB/POZ domain-containing protein KCTD20 [Sus scrofa]
gnl|UG|Ssc#S35173026	0	0	0	0	0	0	"Sus scrofa mRNA, clone:SPL010075A06, expressed in spleen /gb=AK237655 /gi=115546809 /ug=Ssc.6182 /len=1238"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0012505//endomembrane system	GO:0005083//small GTPase regulator activity;GO:0008047//enzyme activator activity;GO:0017016//Ras GTPase binding	GO:0043087//regulation of GTPase activity;GO:0006810//transport;GO:0023052//signaling;GO:0046602//regulation of mitotic centrosome separation	gi|297307137|ref|NP_001171999.1|/3.24307e-94/ran-specific GTPase-activating protein [Sus scrofa]
gnl|UG|Ssc#S58301348	0	0	0	0	9	2.7	"PREDICTED: Sus scrofa PHD finger protein 16 (PHF16), mRNA /cds=p(33,2558) /gb=XM_003135050 /gi=311276206 /ug=Ssc.53774 /len=2576"	GO:0043234//protein complex	GO:0046914//transition metal ion binding	GO:0043967//histone H4 acetylation	gi|311276207|ref|XP_003135098.1|/0/PREDICTED: protein Jade-3-like [Sus scrofa]
gnl|UG|Ssc#S18283093	48	13.82	23	6.57	86	25.85	"BP438990 full-length enriched swine cDNA library, adult lung Sus scrofa cDNA clone LNG010044G01 5', mRNA sequence /clone=LNG010044G01 /clone_end=5' /gb=BP438990 /gi=40429057 /ug=Ssc.19253 /len=904"	-	-	-	-
gnl|UG|Ssc#S35166239	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10217H11, expressed in ovary /gb=AK236702 /gi=115553499 /ug=Ssc.47641 /len=1820"	GO:0016604//nuclear body;GO:0034399//nuclear periphery	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0016925//protein sumoylation;GO:0034339//regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor;GO:0051704;GO:0032501//multicellular organismal process;GO:0007166//cell surface receptor linked signaling pathway	gi|134085695|ref|NP_001076951.1|/0/E3 SUMO-protein ligase PIAS4 [Bos taurus]
gnl|UG|Ssc#S55322701	26	7.49	5	1.43	15	4.51	"Sus scrofa mRNA, clone:DCI010029H04, expressed in dendritic cells (immature) /gb=AK344382 /gi=288782171 /ug=Ssc.83865 /len=2290"	-	-	-	-
gnl|UG|Ssc#S55322350	21	6.05	21	6	2	0.6	"Sus scrofa mRNA, clone:TCH010072A01, expressed in trachea /gb=AK350993 /gi=288782522 /ug=Ssc.16728 /len=1157"	-	-	-	-
gnl|UG|Ssc#S35164231	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:OVR010008B11, expressed in ovary /gb=AK234108 /gi=115555495 /ug=Ssc.2759 /len=1192"	GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0070061//fructose binding;GO:0008443//phosphofructokinase activity;GO:0019899//enzyme binding;GO:0019203//carbohydrate phosphatase activity;GO:0032559	GO:0006007//glucose catabolic process;GO:0050796//regulation of insulin secretion;GO:0009746;GO:0051260//protein homooligomerization;GO:0016310//phosphorylation;GO:0006000//fructose metabolic process	"gi|122692503|ref|NP_001073713.1|/1.79214e-134/6-phosphofructokinase, liver type [Bos taurus]"
gnl|UG|Ssc#S55326060	6	1.73	11	3.14	5	1.5	"Sus scrofa mRNA, clone:OVRM10210E12, expressed in ovary /gb=AK348591 /gi=288778766 /ug=Ssc.55326 /len=2082"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0034062//RNA polymerase activity;GO:0001882//nucleoside binding;GO:0016301//kinase activity	"GO:0006289//nucleotide-excision repair;GO:0000377;GO:0006352//transcription initiation, DNA-dependent;GO:0006397//mRNA processing;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|281352499|gb|EFB28083.1|/0/hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40262555	0	0	0	0	2	0.6	"rlyg30_c4.y1 lyg Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW357462 /gi=182763401 /ug=Ssc.68709 /len=632"	-	-	-	-
gnl|UG|Ssc#S6090494	9	2.59	7	2	7	2.1	"Sus scrofa mRNA for huntingtin, complete cds /cds=p(128,9547) /gb=AB016793 /gi=4126796 /ug=Ssc.43198 /len=12749"	GO:0031410//cytoplasmic vesicle;GO:0031981//nuclear lumen;GO:0043005//neuron projection;GO:0032991//macromolecular complex;GO:0005626//insoluble fraction;GO:0005773//vacuole;GO:0012506//vesicle membrane;GO:0005768//endosome	GO:0008144//drug binding;GO:0015631//tubulin binding;GO:0045502//dynein binding;GO:0016247//channel regulator activity	GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0048468//cell development;GO:0050804//regulation of synaptic transmission;GO:0007006//mitochondrial membrane organization;GO:0040001//establishment of mitotic spindle localization;GO:0048232//male gamete generation;GO:0030072//peptide hormone secretion;GO:0042391//regulation of membrane potential;GO:0001707//mesoderm formation;GO:0055080//cation homeostasis;GO:0010259//multicellular organismal aging;GO:0006090//pyruvate metabolic process;GO:0043650;GO:0010970//microtubule-based transport;GO:0007612//learning;GO:0021544//subpallium development;GO:0006605//protein targeting;GO:0043066//negative regulation of apoptosis;GO:0051705;GO:0051648//vesicle localization;GO:0010038//response to metal ion;GO:0019627//urea metabolic process;GO:0048193//Golgi vesicle transport;GO:0003002//regionalization;GO:0007632//visual behavior;GO:0015813//L-glutamate transport;GO:0001839//neural plate morphogenesis;GO:0006575//cellular modified amino acid metabolic process	gi|55742658|ref|NP_999129.1|/0/huntingtin [Sus scrofa]
gnl|UG|Ssc#S58304569	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa hypermethylated in cancer 1, transcript variant 2 (HIC1), mRNA /cds=p(141,2285) /gb=XM_003131825 /gi=311268074 /ug=Ssc.95049 /len=2285"	GO:0005622//intracellular	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|148226885|ref|NP_034560.2|/0/hypermethylated in cancer 1 protein isoform 1 [Mus musculus]
gnl|UG|Ssc#S35171783	150	43.19	523	149.5	134	40.27	"Sus scrofa mRNA, clone:TCH010033A07, expressed in trachea /gb=AK238036 /gi=115548052 /ug=Ssc.55082 /len=1045"	GO:0031981//nuclear lumen	GO:0005515//protein binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0050796//regulation of insulin secretion;GO:0043388//positive regulation of DNA binding	gi|73973844|ref|XP_854051.1|/2.05218e-36/PREDICTED: similar to high mobility group nucleosomal binding domain 3 isoform HMGN3a [Canis familiaris]
gnl|UG|Ssc#S38675454	7	2.02	16	4.57	7	2.1	"Sus scrofa GNAQ mRNA for guanine nucleotide-binding protein, partial cds /cds=p(1,1077) /gb=AB271925 /gi=146741289 /ug=Ssc.42124 /len=1130"	GO:0032991//macromolecular complex;GO:0005626//insoluble fraction;GO:0031234//extrinsic to internal side of plasma membrane	GO:0060089;GO:0005102//receptor binding;GO:0032561;GO:0008047//enzyme activator activity;GO:0017111//nucleoside-triphosphatase activity;GO:0032403//protein complex binding	"GO:0030326//embryonic limb morphogenesis;GO:0001775//cell activation;GO:0008284//positive regulation of cell proliferation;GO:0033673//negative regulation of kinase activity;GO:0007200//activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger;GO:0021879//forebrain neuron differentiation;GO:0042551//neuron maturation;GO:0035411//catenin import into nucleus;GO:0042391//regulation of membrane potential;GO:0009207;GO:0006464//protein modification process;GO:0007599//hemostasis;GO:0043066//negative regulation of apoptosis;GO:0007188//G-protein signaling, coupled to cAMP nucleotide second messenger;GO:0006813//potassium ion transport;GO:0031647//regulation of protein stability;GO:0050932"	gi|146741290|dbj|BAF62300.1|/0/guanine nucleotide-binding protein [Sus scrofa]
gnl|UG|Ssc#S58304568	6	1.73	12	3.43	5	1.5	"PREDICTED: Sus scrofa telomerase-binding protein EST1A-like (LOC100511407), mRNA /cds=p(1,468) /gb=XM_003131830 /gi=311268076 /ug=Ssc.43274 /len=910"	GO:0044427;GO:0031981//nuclear lumen;GO:0030529//ribonucleoprotein complex	GO:0043169//cation binding;GO:0043565//sequence-specific DNA binding;GO:0004518//nuclease activity	GO:0006259//DNA metabolic process;GO:0016311//dephosphorylation;GO:0006405//RNA export from nucleus;GO:0000956//nuclear-transcribed mRNA catabolic process	gi|311268077|ref|XP_003131878.1|/9.58009e-84/PREDICTED: telomerase-binding protein EST1A-like [Sus scrofa]
gnl|UG|Ssc#S46880292	10	2.88	0	0	6	1.8	"PREDICTED: Sus scrofa vacuolar protein sorting 28 homolog (S. cerevisiae) (VPS28), mRNA /cds=p(129,794) /gb=XM_001927458 /gi=194035503 /ug=Ssc.10875 /len=988"	GO:0005770//late endosome;GO:0031090//organelle membrane	GO:0005488//binding	GO:0016192//vesicle-mediated transport;GO:0016567//protein ubiquitination	gi|194035504|ref|XP_001927493.1|/8.21429e-124/PREDICTED: vacuolar protein sorting-associated protein 28 homolog [Sus scrofa]
gnl|UG|Ssc#S29458896	14	4.03	10	2.86	25	7.51	"POSM0605006_N22R porcine skeletal muscle cDNA library (PoSM) Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DV897647 /gi=82922356 /ug=Ssc.38487 /len=341"	-	-	-	-
gnl|UG|Ssc#S46876690	66	19	20	5.72	31	9.32	"PREDICTED: Sus scrofa replication factor C (activator 1) 5, 36.5kDa (RFC5), mRNA /cds=p(118,1140) /gb=XM_001926269 /gi=311270666 /ug=Ssc.48473 /len=2180"	GO:0031981//nuclear lumen;GO:0005657//replication fork	GO:0016462//pyrophosphatase activity;GO:0005515//protein binding;GO:0032559;GO:0003677//DNA binding	GO:0006261//DNA-dependent DNA replication;GO:0051320;GO:0007050//cell cycle arrest;GO:0009207;GO:0006289//nucleotide-excision repair;GO:0000723//telomere maintenance	gi|194042984|ref|XP_001926304.1|/0/PREDICTED: replication factor C subunit 5 [Sus scrofa]
gnl|UG|Ssc#S58312543	4	1.15	0	0	7	2.1	"PREDICTED: Sus scrofa sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A (SEMA6A), mRNA /cds=p(1,3093) /gb=XM_003123854 /gi=311249994 /ug=Ssc.63557 /len=3166"	GO:0031224//intrinsic to membrane;GO:0043005//neuron projection	GO:0004871//signal transducer activity;GO:0005102//receptor binding	GO:0012501//programmed cell death;GO:0048869;GO:0048731;GO:0006996//organelle organization;GO:0006935//chemotaxis;GO:0007165//signal transduction;GO:0009653//anatomical structure morphogenesis	gi|311249995|ref|XP_003123902.1|/0/PREDICTED: semaphorin-6A-like [Sus scrofa]
gnl|UG|Ssc#S55291179	14	4.03	12	3.43	17	5.11	"FS646995 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10088F04 5', mRNA sequence /clone=BFLT10088F04 /clone_end=5' /gb=FS646995 /gi=288290865 /ug=Ssc.42303 /len=863"	GO:0030139//endocytic vesicle;GO:0031224//intrinsic to membrane	GO:0005515//protein binding	GO:0030301//cholesterol transport;GO:0031647//regulation of protein stability;GO:0015031//protein transport	gi|155371837|ref|NP_001094523.1|/6.81723e-121/syntaxin-12 [Bos taurus]
gnl|UG|Ssc#S35166701	204	58.73	142	40.59	158	47.48	"Sus scrofa mRNA, clone:THY010117D02, expressed in thymus /gb=AK239624 /gi=115553038 /ug=Ssc.21462 /len=1815"	GO:0048770;GO:0030424//axon;GO:0005875//microtubule associated complex	GO:0016597//amino acid binding;GO:0016491//oxidoreductase activity;GO:0030291//protein serine/threonine kinase inhibitor activity;GO:0019899//enzyme binding	GO:0006886//intracellular protein transport;GO:0021543//pallium development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006917//induction of apoptosis;GO:0022402//cell cycle process;GO:0051704;GO:0006470//protein dephosphorylation;GO:0016477//cell migration	gi|5803225|ref|NP_006752.1|/3.00741e-137/14-3-3 protein epsilon [Homo sapiens]
gnl|UG|Ssc#S58309695	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa protein NEDD1-like (LOC100514234), mRNA /cds=p(102,842) /gb=XM_003126703 /gi=311256659 /ug=Ssc.2683 /len=1349"	GO:0005819//spindle;GO:0005813//centrosome	-	GO:0000087//M phase of mitotic cell cycle	"gi|194226680|ref|XP_001495084.2|/1.85104e-130/PREDICTED: neural precursor cell expressed, developmentally down-regulated 1 [Equus caballus]"
gnl|UG|Ssc#S55939200	49	14.11	46	13.15	69	20.74	"Sus scrofa nuclear receptor subfamily 2, group F, member 2 (NR2F2), transcript variant 1, mRNA /cds=p(1,1245) /gb=NM_001190252 /gi=298228992 /ug=Ssc.8676 /len=2465"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003712//transcription cofactor activity;GO:0005501//retinoid binding;GO:0004879//ligand-dependent nuclear receptor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003704//specific RNA polymerase II transcription factor activity;GO:0042802//identical protein binding;GO:0043565//sequence-specific DNA binding	GO:0009653//anatomical structure morphogenesis;GO:0010594//regulation of endothelial cell migration;GO:0032583//regulation of gene-specific transcription;GO:0014706//striated muscle tissue development;GO:0001935//endothelial cell proliferation;GO:0001944//vasculature development;GO:0009755//hormone-mediated signaling pathway;GO:0043627//response to estrogen stimulus;GO:0000079//regulation of cyclin-dependent protein kinase activity;GO:0060850;GO:0003002//regionalization;GO:0007420//brain development;GO:0048736	gi|298228993|ref|NP_001177181.1|/0/COUP transcription factor 2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58302884	3	0.86	0	0	3	0.9	"PREDICTED: Sus scrofa SEC14 domain and spectrin repeat-containing protein 1-like (LOC100519690), mRNA /cds=p(1,678) /gb=XM_003133510 /gi=311272722 /ug=Ssc.12712 /len=1894"	GO:0034703//cation channel complex	GO:0035091//phosphatidylinositol binding	GO:0032412	gi|311272723|ref|XP_003133558.1|/6.83868e-124/PREDICTED: SEC14 domain and spectrin repeat-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58302707	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa insulin receptor substrate 1-like (LOC100512686), mRNA /cds=p(1,3726) /gb=XM_003133689 /gi=311273149 /ug=Ssc.70308 /len=5298"	GO:0042598//vesicular fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0005887//integral to plasma membrane;GO:0044444//cytoplasmic part	"GO:0004714//transmembrane receptor protein tyrosine kinase activity;GO:0005102//receptor binding;GO:0019904//protein domain specific binding;GO:0019901//protein kinase binding;GO:0030674//protein binding, bridging"	GO:0010467//gene expression;GO:0032868//response to insulin stimulus;GO:0008284//positive regulation of cell proliferation;GO:0048017//inositol lipid-mediated signaling;GO:0048732//gland development;GO:0010828//positive regulation of glucose transport;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007243//intracellular protein kinase cascade;GO:0009967//positive regulation of signal transduction;GO:0005979//regulation of glycogen biosynthetic process;GO:0016477//cell migration;GO:0033500//carbohydrate homeostasis;GO:0009968//negative regulation of signal transduction;GO:0043551//regulation of phosphatidylinositol 3-kinase activity;GO:0051259//protein oligomerization;GO:0050796//regulation of insulin secretion;GO:0070253//somatostatin secretion;GO:0006635//fatty acid beta-oxidation;GO:0070092	gi|311273150|ref|XP_003133737.1|/0/PREDICTED: insulin receptor substrate 1-like [Sus scrofa]
gnl|UG|Ssc#S58304018	2	0.58	3	0.86	6	1.8	"PREDICTED: Sus scrofa methyl-CpG binding domain protein 4 (MBD4), mRNA /cds=p(196,1899) /gb=XM_003132378 /gi=311269299 /ug=Ssc.38011 /len=2243"	GO:0031981//nuclear lumen;GO:0043232	"GO:0004519//endonuclease activity;GO:0016799//hydrolase activity, hydrolyzing N-glycosyl compounds;GO:0043565//sequence-specific DNA binding"	"GO:0006285//base-excision repair, AP site formation"	gi|311269300|ref|XP_003132426.1|/0/PREDICTED: methyl-CpG-binding domain protein 4-like [Sus scrofa]
gnl|UG|Ssc#S55326274	18	5.18	21	6	21	6.31	"Sus scrofa mRNA, clone:OVRM10149F09, expressed in ovary /gb=AK348377 /gi=288778552 /ug=Ssc.16243 /len=1500"	-	-	-	-
gnl|UG|Ssc#S58303938	0	0	0	0	0	0	"PREDICTED: Sus scrofa serine/threonine-protein kinase ATR-like (LOC100516227), mRNA /cds=p(57,7991) /gb=XM_003132459 /gi=311269483 /ug=Ssc.7780 /len=8177"	GO:0001739//sex chromatin;GO:0016604//nuclear body	GO:0004672//protein kinase activity;GO:0003676//nucleic acid binding;GO:0032559;GO:0032404	GO:0010332//response to gamma radiation;GO:0006974//response to DNA damage stimulus;GO:0009411//response to UV;GO:0007050//cell cycle arrest;GO:0006468//protein phosphorylation;GO:0009967//positive regulation of signal transduction;GO:0051098//regulation of binding;GO:0006260//DNA replication;GO:0032501//multicellular organismal process	gi|311269484|ref|XP_003132507.1|/0/PREDICTED: serine/threonine-protein kinase ATR-like [Sus scrofa]
gnl|UG|Ssc#S35167900	25	7.2	30	8.58	15	4.51	"Sus scrofa mRNA, clone:OVRM10167H09, expressed in ovary /gb=AK236246 /gi=115551839 /ug=Ssc.3391 /len=1754"	-	-	-	-
gnl|UG|Ssc#S58304999	790	227.44	265	75.75	885	265.97	"PREDICTED: Sus scrofa polymerase I and transcript release factor-like (LOC100522825), mRNA /cds=p(1,1182) /gb=XM_003131398 /gi=311267184 /ug=Ssc.4357 /len=2924"	GO:0044459//plasma membrane part;GO:0042598//vesicular fraction;GO:0044444//cytoplasmic part;GO:0031981//nuclear lumen	GO:0019843//rRNA binding;GO:0003715//transcription termination factor activity	"GO:0006352//transcription initiation, DNA-dependent;GO:0006353//transcription termination, DNA-dependent"	gi|311267185|ref|XP_003131446.1|/8.05901e-170/PREDICTED: polymerase I and transcript release factor-like [Sus scrofa]
gnl|UG|Ssc#S58309174	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa b-cell lymphoma 3 protein-like (LOC100526224), mRNA /cds=p(105,1469) /gb=XM_003127222 /gi=311257743 /ug=Ssc.34383 /len=1902"	GO:0033256//I-kappaB/NF-kappaB complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding	"GO:0002460//adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;GO:0007243//intracellular protein kinase cascade;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0001562//response to protozoan;GO:0042093//T-helper cell differentiation;GO:0006412//translation;GO:0006959//humoral immune response;GO:0008630//DNA damage response, signal transduction resulting in induction of apoptosis;GO:0009411//response to UV;GO:0042348//NF-kappaB import into nucleus;GO:0001819//positive regulation of cytokine production;GO:0002266;GO:0051098//regulation of binding;GO:0043062//extracellular structure organization;GO:0042108//positive regulation of cytokine biosynthetic process;GO:0006952//defense response;GO:0042036//negative regulation of cytokine biosynthetic process;GO:0002313//mature B cell differentiation involved in immune response"	gi|311257744|ref|XP_003127270.1|/0/PREDICTED: b-cell lymphoma 3 protein-like [Sus scrofa]
gnl|UG|Ssc#S35166556	9623	2770.51	5070	1449.25	21492	6458.92	"Sus scrofa mRNA, clone:LVRM10061H09, expressed in liver /gb=AK232980 /gi=115553182 /ug=Ssc.84186 /len=719"	GO:0015935//small ribosomal subunit	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0030490//maturation of SSU-rRNA	gi|4506743|ref|NP_001003.1|/7.89079e-119/40S ribosomal protein S8 [Homo sapiens]
gnl|UG|Ssc#S55319803	0	0	0	0	0	0	"Sus scrofa mRNA, clone:THY010117B01, expressed in thymus /gb=AK351962 /gi=288785081 /ug=Ssc.4973 /len=1434"	GO:0043234//protein complex;GO:0044424//intracellular part	GO:0043169//cation binding;GO:0004721//phosphoprotein phosphatase activity	GO:0000084//S phase of mitotic cell cycle;GO:0006464//protein modification process;GO:0051726//regulation of cell cycle;GO:0006796//phosphate metabolic process	gi|311273343|ref|XP_003133821.1|/0/PREDICTED: integrin-linked kinase-associated serine/threonine phosphatase 2C-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35164920	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10188F10, expressed in liver /gb=AK233618 /gi=115554806 /ug=Ssc.44457 /len=2215"	GO:0005740//mitochondrial envelope	"GO:0005506//iron ion binding;GO:0050662//coenzyme binding;GO:0016670//oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor"	GO:0031667//response to nutrient levels;GO:0008152//metabolic process	"gi|301760476|ref|XP_002916105.1|/0/PREDICTED: sulfite oxidase, mitochondrial-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S16769294	2	0.58	2	0.57	2	0.6	"841594 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF366889 /gi=34170906 /ug=Ssc.28369 /len=699"	GO:0031224//intrinsic to membrane;GO:0033267//axon part	GO:0005488//binding	GO:0008366//axon ensheathment;GO:0006935//chemotaxis	"gi|310942942|pdb|3P3Y|A/2.64649e-132/Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522"
gnl|UG|Ssc#S55322201	6	1.73	12	3.43	9	2.7	"Sus scrofa mRNA, clone:DCI010107E11, expressed in dendritic cells (immature) /gb=AK344682 /gi=288782671 /ug=Ssc.21573 /len=2937"	GO:0031224//intrinsic to membrane	-	-	gi|311255938|ref|XP_003126424.1|/4.29885e-171/PREDICTED: transmembrane protein 19-like [Sus scrofa]
gnl|UG|Ssc#S46880823	6	1.73	3	0.86	9	2.7	"PREDICTED: Sus scrofa leucine rich repeat containing 49 (LRRC49), mRNA /cds=p(1,2058) /gb=XM_001928481 /gi=311245399 /ug=Ssc.13335 /len=2537"	GO:0015630//microtubule cytoskeleton	-	-	gi|194034378|ref|XP_001928516.1|/0/PREDICTED: leucine-rich repeat-containing protein 49-like [Sus scrofa]
gnl|UG|Ssc#S34502073	2	0.58	4	1.14	0	0	"DB814372 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10156F05 /clone_end=3' /gb=DB814372 /gi=112782840 /ug=Ssc.14215 /len=817"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane;GO:0005626//insoluble fraction	"GO:0005488//binding;GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"	GO:0006633//fatty acid biosynthetic process;GO:0006643//membrane lipid metabolic process	gi|301774050|ref|XP_002922447.1|/3.24222e-77/PREDICTED: sphingolipid delta(4)-desaturase DES1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S18548755	2	0.58	2	0.57	5	1.5	"BX917406 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0038.n.02 5prim, mRNA sequence /clone=scan0038.n.02 /clone_end=5' /gb=BX917406 /gi=90240072 /ug=Ssc.7060 /len=901"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity;GO:0008276//protein methyltransferase activity	GO:0018216//peptidyl-arginine methylation;GO:0050954//sensory perception of mechanical stimulus;GO:0032446//protein modification by small protein conjugation;GO:0019941//modification-dependent protein catabolic process	gi|297667668|ref|XP_002812094.1|/4.0843e-87/PREDICTED: f-box only protein 11 isoform 1 [Pongo abelii]
gnl|UG|Ssc#S26723864	2	0.58	0	0	0	0	"AJ959948 KN404_2 Sus scrofa cDNA clone C0007752m20 3', mRNA sequence /clone=C0007752m20 /clone_end=3' /gb=AJ959948 /gi=74376764 /ug=Ssc.35795 /len=572"	-	-	-	-
gnl|UG|Ssc#S55320257	7	2.02	4	1.14	2	0.6	"Sus scrofa mRNA, clone:THY010065F11, expressed in thymus /gb=AK351706 /gi=288784615 /ug=Ssc.9865 /len=1554"	-	GO:0046914//transition metal ion binding	-	gi|149701223|ref|XP_001488036.1|/0/PREDICTED: RUN and FYVE domain containing 3 [Equus caballus]
gnl|UG|Ssc#S58307036	649	186.85	386	110.34	581	174.61	"PREDICTED: Sus scrofa heterogeneous nuclear ribonucleoprotein D-like (LOC100511704), mRNA /cds=p(178,645) /gb=XM_003129361 /gi=311262901 /ug=Ssc.55768 /len=3596"	GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0003729//mRNA binding;GO:0043566//structure-specific DNA binding	GO:0010467//gene expression;GO:0016070//RNA metabolic process	gi|297673870|ref|XP_002814970.1|/4.37282e-72/PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Pongo abelii]
gnl|UG|Ssc#S58304578	14	4.03	0	0	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100524762 (LOC100524762), mRNA /cds=p(1,5838) /gb=XM_003131820 /gi=311268055 /ug=Ssc.21896 /len=6683"	-	-	-	gi|311268056|ref|XP_003131868.1|/0/PREDICTED: hypothetical protein LOC100524762 [Sus scrofa]
gnl|UG|Ssc#S46881272	12	3.45	0	0	24	7.21	"PREDICTED: Sus scrofa transmembrane protein 181-like (LOC100156875), mRNA /cds=p(1,594) /gb=XM_001924288 /gi=311243719 /ug=Ssc.72198 /len=850"	GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0051704	gi|311243720|ref|XP_001924323.2|/2.21747e-108/PREDICTED: transmembrane protein 181-like [Sus scrofa]
gnl|UG|Ssc#S58302110	63	18.14	148	42.31	36	10.82	"PREDICTED: Sus scrofa crooked neck-like protein 1-like (LOC100512506), mRNA /cds=p(1,1506) /gb=XM_003134288 /gi=311274455 /ug=Ssc.83964 /len=1807"	-	-	-	gi|311274456|ref|XP_003134336.1|/0/PREDICTED: crooked neck-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35168645	164	47.22	121	34.59	134	40.27	"Sus scrofa mRNA, clone:THY010046A09, expressed in thymus /gb=AK238906 /gi=115551045 /ug=Ssc.14250 /len=1818"	GO:0001739//sex chromatin;GO:0016020//membrane	GO:0019787//small conjugating protein ligase activity;GO:0032559;GO:0019899//enzyme binding	GO:0032868//response to insulin stimulus;GO:0006915//apoptosis;GO:0016055//Wnt receptor signaling pathway;GO:0006281//DNA repair;GO:0003006//developmental process involved in reproduction;GO:0043009//chordate embryonic development;GO:0048232//male gamete generation;GO:0001933//negative regulation of protein phosphorylation;GO:0009416//response to light stimulus;GO:0016577//histone demethylation;GO:0009968//negative regulation of signal transduction;GO:0008283//cell proliferation;GO:0007131//reciprocal meiotic recombination;GO:0016574//histone ubiquitination;GO:0000209//protein polyubiquitination;GO:0031647//regulation of protein stability;GO:0006511//ubiquitin-dependent protein catabolic process	gi|74008869|ref|XP_549217.2|/1.32255e-100/PREDICTED: similar to Ubiquitin-conjugating enzyme E2 A (Ubiquitin-protein ligase A) (Ubiquitin carrier protein A) (HR6A) (mHR6A) [Canis familiaris]
gnl|UG|Ssc#S55322523	7	2.02	2	0.57	2	0.6	"Sus scrofa mRNA, clone:TCH010038A10, expressed in trachea /gb=AK350821 /gi=288782349 /ug=Ssc.10864 /len=3539"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0005488//binding	"GO:0000377;GO:0006397//mRNA processing;GO:0051259//protein oligomerization;GO:0006353//transcription termination, DNA-dependent"	"gi|73983851|ref|XP_533274.2|/8.11293e-180/PREDICTED: similar to pre-mRNA cleavage factor I, 59 kDa subunit [Canis familiaris]"
gnl|UG|Ssc#S55278536	13	3.74	61	17.44	32	9.62	"FS707242 full-length enriched swine cDNA library, adult pituitary gland Sus scrofa cDNA clone PTG010032F08 5', mRNA sequence /clone=PTG010032F08 /clone_end=5' /gb=FS707242 /gi=288275972 /ug=Ssc.63998 /len=751"	GO:0005769//early endosome;GO:0031224//intrinsic to membrane	-	GO:0050896//response to stimulus	gi|149733026|ref|XP_001488482.1|/6.0469e-48/PREDICTED: hypothetical protein [Equus caballus]
gnl|UG|Ssc#S46877716	3	0.86	0	0	5	1.5	"PREDICTED: Sus scrofa leucine zipper transcription factor-like 1 (LZTFL1), mRNA /cds=p(170,1069) /gb=XM_001926820 /gi=311268785 /ug=Ssc.9371 /len=1521"	-	-	-	gi|311268786|ref|XP_001926855.2|/2.15075e-162/PREDICTED: leucine zipper transcription factor-like 1 [Sus scrofa]
gnl|UG|Ssc#S58304878	10	2.88	5	1.43	21	6.31	"PREDICTED: Sus scrofa f-box/LRR-repeat protein 20-like (LOC100517553), mRNA /cds=p(1,1182) /gb=XM_003131523 /gi=311267431 /ug=Ssc.18138 /len=2825"	GO:0044424//intracellular part	GO:0005488//binding	-	gi|311267432|ref|XP_003131571.1|/0/PREDICTED: f-box/LRR-repeat protein 20-like [Sus scrofa]
gnl|UG|Ssc#S40576057	20	5.76	25	7.15	11	3.31	"rtra11_m24r1.y1 tra Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW662770 /gi=183101673 /ug=Ssc.26454 /len=664"	-	-	-	-
gnl|UG|Ssc#S58305087	98	28.21	55	15.72	52	15.63	"PREDICTED: Sus scrofa MLL1/MLL complex subunit KIAA1267-like (LOC100517913), mRNA /cds=p(129,3437) /gb=XM_003131310 /gi=311267007 /ug=Ssc.13401 /len=4997"	GO:0035097//histone methyltransferase complex	GO:0005488//binding	-	gi|311267008|ref|XP_003131358.1|/0/PREDICTED: MLL1/MLL complex subunit KIAA1267-like [Sus scrofa]
gnl|UG|Ssc#S16770249	2	0.58	0	0	2	0.6	"852437 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF367857 /gi=34172806 /ug=Ssc.45890 /len=727"	-	-	-	-
gnl|UG|Ssc#S46881157	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa leucine rich repeat containing 8 family, member A (LRRC8A), mRNA /cds=p(222,2654) /gb=XM_001928850 /gi=311246584 /ug=Ssc.58794 /len=3276"	GO:0031224//intrinsic to membrane	-	GO:0002327	gi|194033672|ref|XP_001928885.1|/0/PREDICTED: leucine-rich repeat-containing protein 8A [Sus scrofa]
gnl|UG|Ssc#S58305645	27	7.77	8	2.29	39	11.72	"PREDICTED: Sus scrofa decaprenyl-diphosphate synthase subunit 1-like, transcript variant 1 (LOC100514361), mRNA /cds=p(41,1273) /gb=XM_003130752 /gi=311265742 /ug=Ssc.55327 /len=1571"	GO:0043231//intracellular membrane-bounded organelle	"GO:0043169//cation binding;GO:0046983//protein dimerization activity;GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups"	GO:0006720//isoprenoid metabolic process;GO:0051262//protein tetramerization;GO:0006743//ubiquinone metabolic process	gi|311265743|ref|XP_003130800.1|/0/PREDICTED: decaprenyl-diphosphate synthase subunit 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35172038	79	22.74	58	16.58	49	14.73	"Sus scrofa mRNA, clone:OVRM10014G03, expressed in ovary /gb=AK234773 /gi=115547797 /ug=Ssc.3059 /len=1433"	-	-	-	-
gnl|UG|Ssc#S58306674	12	3.45	2	0.57	2	0.6	"PREDICTED: Sus scrofa synaptotagmin-like protein 2-like (LOC100516923), mRNA /cds=p(1,2004) /gb=XM_003129712 /gi=311263636 /ug=Ssc.37546 /len=2004"	GO:0005626//insoluble fraction;GO:0019898//extrinsic to membrane;GO:0030133//transport vesicle;GO:0048770	GO:0035091//phosphatidylinositol binding;GO:0005515//protein binding	GO:0006887//exocytosis	gi|311263637|ref|XP_003129760.1|/0/PREDICTED: synaptotagmin-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58313426	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa microtubule associated monoxygenase, calponin and LIM domain containing 2 (MICAL2), partial mRNA /cds=p(1,1152) /gb=XM_003122975 /gi=311248196 /ug=Ssc.81126 /len=1152"	GO:0043232	GO:0046914//transition metal ion binding;GO:0016491//oxidoreductase activity	GO:0008152//metabolic process	"gi|311248197|ref|XP_003123023.1|/0/PREDICTED: protein MICAL-2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S55323652	0	0	0	0	6	1.8	"Sus scrofa mRNA, clone:SPL010044G06, expressed in spleen /gb=AK350359 /gi=288781220 /ug=Ssc.25767 /len=1019"	-	"GO:0016788//hydrolase activity, acting on ester bonds;GO:0019783//small conjugating protein-specific protease activity"	-	gi|51094562|gb|EAL23814.1|/1.0923e-102/similar to RIKEN cDNA 2700038N03 [Homo sapiens]
gnl|UG|Ssc#S58308539	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa uncharacterized protein C18orf8-like (LOC100512111), partial mRNA /cds=p(1,480) /gb=XM_003127864 /gi=311259041 /ug=Ssc.78722 /len=1044"	-	-	-	"gi|311259042|ref|XP_003127912.1|/1.35211e-87/PREDICTED: uncharacterized protein C18orf8-like, partial [Sus scrofa]"
gnl|UG|Ssc#S20939369	15	4.32	8	2.29	12	3.61	"AJ651092 CSEQRAN19 Sus scrofa cDNA clone C0003277_D20, mRNA sequence /clone=C0003277_D20 /gb=AJ651092 /gi=49327937 /ug=Ssc.85685 /len=530"	GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding;GO:0032561;GO:0017111//nucleoside-triphosphatase activity"	GO:0006413//translational initiation	"gi|149046323|gb|EDL99216.1|/2.10782e-96/rCG22154, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S38982513	0	0	6	1.72	9	2.7	"Sus scrofa protein phosphatase 2A regulatory subunit B B56 alpha isoform (PPP2R5A) mRNA, complete cds /cds=p(219,1682) /gb=DQ115798 /gi=72003818 /ug=Ssc.12282 /len=2760"	GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0044427;GO:0008287//protein serine/threonine phosphatase complex	GO:0019888//protein phosphatase regulator activity;GO:0019899//enzyme binding	GO:0048523//negative regulation of cellular process;GO:0006470//protein dephosphorylation;GO:0023052//signaling;GO:0033673//negative regulation of kinase activity	gi|154147714|ref|NP_001093662.1|/0/serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform [Sus scrofa]
gnl|UG|Ssc#S46879712	15	4.32	2	0.57	19	5.71	"PREDICTED: Sus scrofa inositol monophosphatase 3-like (LOC100156925), mRNA /cds=p(279,1358) /gb=XM_001926302 /gi=311253812 /ug=Ssc.5746 /len=2002"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0008252//nucleotidase activity;GO:0004437//inositol or phosphatidylinositol phosphatase activity	GO:0001503//ossification;GO:0006796//phosphate metabolic process;GO:0002062//chondrocyte differentiation;GO:0006790//sulfur compound metabolic process;GO:0030326//embryonic limb morphogenesis	gi|194036710|ref|XP_001926337.1|/0/PREDICTED: inositol monophosphatase 3-like [Sus scrofa]
gnl|UG|Ssc#S58301251	29	8.35	9	2.57	32	9.62	"PREDICTED: Sus scrofa LAS1-like (LOC100156298), mRNA /cds=p(1,720) /gb=XM_003135145 /gi=311276405 /ug=Ssc.6916 /len=1047"	GO:0035097//histone methyltransferase complex	GO:0003676//nucleic acid binding;GO:0034061	-	gi|311276406|ref|XP_003135193.1|/4.95325e-114/PREDICTED: hypothetical protein LOC100156298 [Sus scrofa]
gnl|UG|Ssc#S40427272	8	2.3	8	2.29	8	2.4	"rpty638b_h20.y1 pty Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW521879 /gi=183167888 /ug=Ssc.69288 /len=267"	-	-	-	-
gnl|UG|Ssc#S35169682	29	8.35	22	6.29	103	30.95	"Sus scrofa mRNA, clone:OVRM10099H12, expressed in ovary /gb=AK235636 /gi=115550157 /ug=Ssc.6356 /len=1797"	GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0016831//carboxy-lyase activity	GO:0006595//polyamine metabolic process;GO:0006520//cellular amino acid metabolic process;GO:0051707//response to other organism	gi|262204912|dbj|BAI48036.1|/0/ornithine decarboxylase 1 [Sus scrofa]
gnl|UG|Ssc#S58309863	49	14.11	27	7.72	54	16.23	"PREDICTED: Sus scrofa chromodomain helicase DNA binding protein 4 (CHD4), mRNA /cds=p(228,5966) /gb=XM_003126529 /gi=311256288 /ug=Ssc.25044 /len=6987"	GO:0043232;GO:0000118//histone deacetylase complex	GO:0003678//DNA helicase activity;GO:0046872//metal ion binding;GO:0005515//protein binding;GO:0000166//nucleotide binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|311256289|ref|XP_003126577.1|/0/PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Sus scrofa]
gnl|UG|Ssc#S58311076	109	31.38	61	17.44	169	50.79	"PREDICTED: Sus scrofa ras-related protein Rab-10-like (LOC100526104), mRNA /cds=p(542,1144) /gb=XM_003125315 /gi=311252999 /ug=Ssc.5049 /len=3989"	GO:0044431//Golgi apparatus part;GO:0005626//insoluble fraction;GO:0016020//membrane	GO:0032561	GO:0035556//intracellular signal transduction;GO:0046677//response to antibiotic;GO:0015031//protein transport	gi|7710086|ref|NP_057885.1|/2.39959e-111/ras-related protein Rab-10 [Mus musculus]
gnl|UG|Ssc#S35167610	0	0	0	0	0	0	"Sus scrofa mRNA, clone:THY010092G09, expressed in thymus /gb=AK239322 /gi=115552129 /ug=Ssc.24217 /len=2024"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0006259//DNA metabolic process	gi|311257197|ref|XP_003127002.1|/2.02413e-121/PREDICTED: DNA replication complex GINS protein PSF3-like [Sus scrofa]
gnl|UG|Ssc#S29990134	3	0.86	0	0	2	0.6	"PDUts2091E10 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2091E10 5' similar to homologue to ref|NM_145020.2| Homo sapiens hypothetical protein FLJ32743 (FLJ32743), mRNA, mRNA sequence /clone=PDUts2091E10 /clone_end=5' /gb=CX064608 /gi=84140750 /ug=Ssc.44415 /len=531"	-	-	-	gi|297489808|ref|XP_002697813.1|/1.09374e-44/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S18379108	0	0	0	0	0	0	"923693 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK459217 /gi=40830498 /ug=Ssc.52783 /len=895"	-	-	-	gi|45478222|gb|AAS66282.1|/4.54451e-49/LRRGT00191 [Rattus norvegicus]
gnl|UG|Ssc#S58310827	9	2.59	11	3.14	4	1.2	"PREDICTED: Sus scrofa OTU domain-containing protein 6B-like (LOC100157831), mRNA /cds=p(1,972) /gb=XM_003125574 /gi=311253638 /ug=Ssc.95863 /len=972"	-	-	-	gi|311253639|ref|XP_003125622.1|/4.99513e-158/PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Sus scrofa]
gnl|UG|Ssc#S58304808	7	2.02	19	5.43	21	6.31	"PREDICTED: Sus scrofa neurabin-2-like (LOC100516875), mRNA /cds=p(1,3840) /gb=XM_003131593 /gi=311267578 /ug=Ssc.11683 /len=3840"	GO:0031981//nuclear lumen;GO:0015629//actin cytoskeleton;GO:0001726//ruffle;GO:0030054//cell junction	GO:0008092//cytoskeletal protein binding;GO:0019903//protein phosphatase binding;GO:0019212//phosphatase inhibitor activity	GO:0001558//regulation of cell growth;GO:0008283//cell proliferation;GO:0031175//neuron projection development;GO:0048870//cell motility;GO:0030036//actin cytoskeleton organization;GO:0006396//RNA processing;GO:0006468//protein phosphorylation;GO:0022402//cell cycle process;GO:0007346//regulation of mitotic cell cycle	gi|311267579|ref|XP_003131641.1|/0/PREDICTED: neurabin-2-like [Sus scrofa]
gnl|UG|Ssc#S58304055	3	0.86	8	2.29	2	0.6	"PREDICTED: Sus scrofa class E basic helix-loop-helix protein 40-like (LOC100514873), mRNA /cds=p(82,1320) /gb=XM_003132340 /gi=311269207 /ug=Ssc.8861 /len=2829"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0009314//response to radiation;GO:0048731;GO:0006355//regulation of transcription, DNA-dependent;GO:0048511//rhythmic process;GO:0048167//regulation of synaptic plasticity;GO:0009605//response to external stimulus"	gi|311269208|ref|XP_003132388.1|/0/PREDICTED: class E basic helix-loop-helix protein 40-like [Sus scrofa]
gnl|UG|Ssc#S35169841	19	5.47	2	0.57	7	2.1	"Sus scrofa mRNA, clone:LNG010110A02, expressed in lung /gb=AK232233 /gi=115549998 /ug=Ssc.94681 /len=1067"	GO:0005667//transcription factor complex;GO:0035097//histone methyltransferase complex	GO:0030528//transcription regulator activity;GO:0042393//histone binding;GO:0000166//nucleotide binding;GO:0003712//transcription cofactor activity;GO:0004468//lysine N-acetyltransferase activity;GO:0004672//protein kinase activity;GO:0043565//sequence-specific DNA binding;GO:0008134//transcription factor binding	"GO:0070897;GO:0016570//histone modification;GO:0051318//G1 phase;GO:0060260;GO:0006468//protein phosphorylation;GO:0006354//transcription elongation, DNA-dependent;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0031331;GO:0033554//cellular response to stress;GO:0000086//G2/M transition of mitotic cell cycle"	gi|301787379|ref|XP_002929103.1|/5.61347e-121/PREDICTED: transcription initiation factor TFIID subunit 1-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58306960	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa FTS and Hook-interacting protein-like (LOC100519503), mRNA /cds=p(265,2787) /gb=XM_003129462 /gi=311263059 /ug=Ssc.5935 /len=2787"	GO:0043234//protein complex	GO:0005488//binding	GO:0007041//lysosomal transport;GO:0016197//endosome transport;GO:0007033//vacuole organization	gi|311263060|ref|XP_003129510.1|/0/PREDICTED: FTS and Hook-interacting protein-like [Sus scrofa]
gnl|UG|Ssc#S34535466	10	2.88	7	2	4	1.2	"Sus scrofa retinoid X receptor gamma (RXRgamma) mRNA, RXRgamma-BRACA1 allele, complete cds /cds=p(171,1562) /gb=DQ866834 /gi=112820328 /ug=Ssc.19608 /len=1881"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0008289//lipid binding;GO:0003708//retinoic acid receptor activity	GO:0014706//striated muscle tissue development;GO:0033189//response to vitamin A;GO:0009755//hormone-mediated signaling pathway;GO:0048513//organ development;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0030154//cell differentiation;GO:0030522//intracellular receptor mediated signaling pathway;GO:0007399//nervous system development	gi|194332487|ref|NP_001123685.1|/0/retinoic acid receptor RXR-gamma [Sus scrofa]
gnl|UG|Ssc#S17513916	0	0	0	0	0	0	"BX668485 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0025.l.17 5prim, mRNA sequence /clone=scac0025.l.17 /clone_end=5' /gb=BX668485 /gi=90246483 /ug=Ssc.19233 /len=777"	-	-	-	"gi|56203752|emb|CAI20431.1|/1.39866e-18/collagen, type IX, alpha 2 [Homo sapiens]"
gnl|UG|Ssc#S58309193	20	5.76	11	3.14	4	1.2	"PREDICTED: Sus scrofa zinc finger protein 428-like, transcript variant 1 (LOC100519901), mRNA /cds=p(224,802) /gb=XM_003127191 /gi=311257705 /ug=Ssc.24397 /len=973"	-	-	-	gi|311257704|ref|XP_003127240.1|/3.01107e-62/PREDICTED: zinc finger protein 428-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58313242	0	0	0	0	0	0	"PREDICTED: Sus scrofa XPA binding protein 2 (XAB2), mRNA /cds=p(23,2590) /gb=XM_003123151 /gi=311248569 /ug=Ssc.48349 /len=2645"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0000377;GO:0001701//in utero embryonic development;GO:0006289//nucleotide-excision repair	gi|311248570|ref|XP_003123199.1|/0/PREDICTED: pre-mRNA-splicing factor SYF1-like [Sus scrofa]
gnl|UG|Ssc#S35166914	36	10.36	19	5.43	22	6.61	"Sus scrofa mRNA, clone:THY010102D11, expressed in thymus /gb=AK239419 /gi=115552825 /ug=Ssc.44512 /len=1279"	-	GO:0005488//binding	-	"gi|148693879|gb|EDL25826.1|/5.87299e-171/WD repeat domain 61, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S23213289	3	0.86	10	2.86	8	2.4	"Sus scrofa clone Clu_27469.scr.msk.p1.Contig1, mRNA sequence /gb=AY609719 /gi=52351287 /ug=Ssc.19205 /len=1138"	GO:0044444//cytoplasmic part	"GO:0042802//identical protein binding;GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups;GO:0016755"	GO:0008637//apoptotic mitochondrial changes	gi|83035087|ref|NP_001032699.1|/7.07319e-93/gamma-glutamylcyclotransferase [Bos taurus]
gnl|UG|Ssc#S18355655	6	1.73	5	1.43	8	2.4	"904233 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK451100 /gi=40798314 /ug=Ssc.18090 /len=808"	GO:0016604//nuclear body	GO:0005488//binding	"GO:0006464//protein modification process;GO:0051169//nuclear transport;GO:0042221//response to chemical stimulus;GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|297672374|ref|XP_002814276.1|/1.93525e-58/PREDICTED: arginine/serine-rich coiled-coil protein 1-like isoform 2 [Pongo abelii]
gnl|UG|Ssc#S58306592	4	1.15	6	1.72	5	1.5	"PREDICTED: Sus scrofa uncharacterized protein KIAA1377-like (LOC100520090), mRNA /cds=p(1,3381) /gb=XM_003129805 /gi=311263802 /ug=Ssc.3228 /len=3887"	-	-	-	-
gnl|UG|Ssc#S46880696	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa DENN/MADD domain containing 4A (DENND4A), mRNA /cds=p(1,5781) /gb=XM_001924216 /gi=311245315 /ug=Ssc.18787 /len=5781"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|311245316|ref|XP_001924251.2|/0/PREDICTED: LOW QUALITY PROTEIN: c-myc promoter-binding protein [Sus scrofa]
gnl|UG|Ssc#S58313422	111	31.96	56	16.01	60	18.03	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 4 gamma 2-like (LOC100520826), mRNA /cds=p(512,2617) /gb=XM_003122979 /gi=311248204 /ug=Ssc.50879 /len=3669"	GO:0043234//protein complex	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006413//translational initiation;GO:0022402//cell cycle process	gi|194380992|dbj|BAG64064.1|/0/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S58305833	202	58.16	54	15.44	61	18.33	"PREDICTED: Sus scrofa heterogeneous nuclear ribonucleoprotein U-like (LOC100515571), mRNA /cds=p(235,3303) /gb=XM_003130567 /gi=311265351 /ug=Ssc.1964 /len=3303"	GO:0043234//protein complex;GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0032559	GO:0000377;GO:0048255//mRNA stabilization	gi|311265352|ref|XP_003130615.1|/0/PREDICTED: heterogeneous nuclear ribonucleoprotein U-like [Sus scrofa]
gnl|UG|Ssc#S46876703	14	4.03	2	0.57	10	3.01	"PREDICTED: Sus scrofa ataxin 2 (ATXN2), mRNA /cds=p(1,3900) /gb=XM_001929533 /gi=311270635 /ug=Ssc.72630 /len=4493"	GO:0031981//nuclear lumen;GO:0044431//Golgi apparatus part;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding;GO:0019904//protein domain specific binding	GO:0042592//homeostatic process;GO:0021533//cell differentiation in hindbrain;GO:0006412//translation;GO:0022618//ribonucleoprotein complex assembly;GO:0050657;GO:0050877//neurological system process;GO:0048858//cell projection morphogenesis;GO:0035264//multicellular organism growth	gi|194042957|ref|XP_001929568.1|/0/PREDICTED: ataxin-2 [Sus scrofa]
gnl|UG|Ssc#S35174050	10	2.88	5	1.43	8	2.4	"Sus scrofa mRNA, clone:OVR010028H07, expressed in ovary /gb=AK234218 /gi=115545785 /ug=Ssc.4187 /len=1766"	GO:0005768//endosome;GO:0031410//cytoplasmic vesicle;GO:0012506//vesicle membrane	GO:0070325//lipoprotein particle receptor binding;GO:0005543//phospholipid binding	GO:0023052//signaling;GO:0006897//endocytosis;GO:0008203//cholesterol metabolic process;GO:0015031//protein transport	gi|301755946|ref|XP_002913857.1|/0/PREDICTED: sorting nexin-17-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40177122	33	9.5	25	7.15	50	15.03	"risp02_m3.y1 isp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW272029 /gi=182488842 /ug=Ssc.9253 /len=700"	-	-	-	-
gnl|UG|Ssc#S58302974	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa bromodomain adjacent to zinc finger domain, 2B (BAZ2B), mRNA /cds=p(1,3102) /gb=XM_003133422 /gi=311272496 /ug=Ssc.39843 /len=3102"	-	GO:0046872//metal ion binding	"GO:0006351//transcription, DNA-dependent"	gi|311272497|ref|XP_003133470.1|/0/PREDICTED: bromodomain adjacent to zinc finger domain protein 2B-like [Sus scrofa]
gnl|UG|Ssc#S40415669	0	0	4	1.14	2	0.6	"rplac_0730.y1 pla Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW510276 /gi=183042670 /ug=Ssc.92303 /len=428"	GO:0005819//spindle	GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0032559;GO:0019900//kinase binding	GO:0001934//positive regulation of protein phosphorylation;GO:0006461//protein complex assembly;GO:0032507//maintenance of protein location in cell;GO:0008064//regulation of actin polymerization or depolymerization;GO:0000079//regulation of cyclin-dependent protein kinase activity;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0007059//chromosome segregation;GO:0000087//M phase of mitotic cell cycle;GO:0035556//intracellular signal transduction	gi|300797574|ref|NP_001179795.1|/1.53491e-76/serine/threonine-protein kinase LATS1 [Bos taurus]
gnl|UG|Ssc#S35164164	302	86.95	563	160.93	309	92.86	"Sus scrofa mRNA, clone:SPL010010H08, expressed in spleen /gb=AK237194 /gi=115555562 /ug=Ssc.19414 /len=1388"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0015934//large ribosomal subunit	GO:0019843//rRNA binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0010035//response to inorganic substance;GO:0031016//pancreas development;GO:0042254//ribosome biogenesis;GO:0010921	gi|62087540|dbj|BAD92217.1|/3.0484e-160/ribosomal protein L5 variant [Homo sapiens]
gnl|UG|Ssc#S50699622	50	14.4	32	9.15	28	8.41	"Sus scrofa valyl-tRNA synthetase (VARS) mRNA, complete cds /cds=p(200,3997) /gb=EU282356 /gi=162138235 /ug=Ssc.24367 /len=4253"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	gi|305855130|ref|NP_001182307.1|/0/valyl-tRNA synthetase [Sus scrofa]
gnl|UG|Ssc#S20938088	5	1.44	0	0	3	0.9	"AJ649811 CSEQRAN19 Sus scrofa cDNA clone C0003273_I21, mRNA sequence /clone=C0003273_I21 /gb=AJ649811 /gi=49326656 /ug=Ssc.85627 /len=457"	-	GO:0003824//catalytic activity;GO:0046914//transition metal ion binding	-	"gi|148704183|gb|EDL36130.1|/9.64456e-71/mCG13855, isoform CRA_f [Mus musculus]"
gnl|UG|Ssc#S21550565	23	6.62	14	4	10	3.01	"UMC-p2mm4-001-c12 2mm ovarian follicle p2mm Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO942639 /gi=51309398 /ug=Ssc.86350 /len=357"	-	-	-	gi|74141740|dbj|BAE38614.1|/4.75815e-17/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S26726421	0	0	2	0.57	2	0.6	"AJ962505 KN404_2 Sus scrofa cDNA clone C0007757f03 3', mRNA sequence /clone=C0007757f03 /clone_end=3' /gb=AJ962505 /gi=74379321 /ug=Ssc.11675 /len=775"	-	-	-	-
gnl|UG|Ssc#S58313189	24	6.91	13	3.72	15	4.51	"PREDICTED: Sus scrofa choline transporter-like protein 2-like, transcript variant 2 (LOC100524730), mRNA /cds=p(69,2183) /gb=XM_003123211 /gi=311248675 /ug=Ssc.54143 /len=3386"	GO:0031224//intrinsic to membrane	GO:0060089;GO:0005275//amine transmembrane transporter activity	GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0015697//quaternary ammonium group transport	gi|311248676|ref|XP_003123259.1|/0/PREDICTED: choline transporter-like protein 2-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S20937727	5	1.44	0	0	6	1.8	"AJ649450 CSEQRAN19 Sus scrofa cDNA clone C0003272_I10, mRNA sequence /clone=C0003272_I10 /gb=AJ649450 /gi=49326295 /ug=Ssc.85600 /len=551"	-	-	-	-
gnl|UG|Ssc#S55326615	24	6.91	9	2.57	3	0.9	"Sus scrofa mRNA, clone:OVRM10047B12, expressed in ovary /gb=AK348036 /gi=288778211 /ug=Ssc.16210 /len=3093"	-	-	-	-
gnl|UG|Ssc#S58305034	13	3.74	12	3.43	4	1.2	"PREDICTED: Sus scrofa protein LSM12 homolog (LOC100515338), mRNA /cds=p(1,339) /gb=XM_003131370 /gi=311267114 /ug=Ssc.24956 /len=850"	-	GO:0005488//binding	-	gi|311267115|ref|XP_003131418.1|/7.48532e-56/PREDICTED: protein LSM12 homolog [Sus scrofa]
gnl|UG|Ssc#S40831914	3	0.86	4	1.14	4	1.2	"Sus scrofa MDM2 mRNA, complete cds /cds=p(361,1836) /gb=EU119401 /gi=157073219 /ug=Ssc.62777 /len=1905"	GO:0032991//macromolecular complex;GO:0016020//membrane;GO:0000267//cell fraction;GO:0030139//endocytic vesicle;GO:0044451//nucleoplasm part	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0019787//small conjugating protein ligase activity;GO:0016564//transcription repressor activity	"GO:0051234//establishment of localization;GO:0000080//G1 phase of mitotic cell cycle;GO:0007267//cell-cell signaling;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0031647//regulation of protein stability;GO:0048017//inositol lipid-mediated signaling;GO:0009968//negative regulation of signal transduction;GO:0008283//cell proliferation;GO:0007050//cell cycle arrest;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009057//macromolecule catabolic process;GO:0016567//protein ubiquitination;GO:0065003;GO:0006915//apoptosis;GO:0031331;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0051704;GO:0007346//regulation of mitotic cell cycle;GO:0033365//protein localization to organelle"	gi|157427730|ref|NP_001098773.1|/0/E3 ubiquitin-protein ligase Mdm2 [Sus scrofa]
gnl|UG|Ssc#S35173351	63	18.14	78	22.3	20	6.01	"Sus scrofa mRNA, clone:AMP010079D10, expressed in alveolar macrophage /gb=AK231003 /gi=115546484 /ug=Ssc.47630 /len=3345"	GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0030528//transcription regulator activity	"GO:0008366//axon ensheathment;GO:0001503//ossification;GO:2000026//regulation of multicellular organismal development;GO:0006355//regulation of transcription, DNA-dependent;GO:0007422//peripheral nervous system development"	gi|156120725|ref|NP_001095509.1|/1.00149e-171/NGFI-A-binding protein 1 [Bos taurus]
gnl|UG|Ssc#S35173205	461	132.72	207	59.17	349	104.88	"Sus scrofa mRNA, clone:OVR010067G09, expressed in ovary /gb=AK234468 /gi=115546630 /ug=Ssc.2456 /len=1811"	GO:0005815//microtubule organizing center;GO:0032991//macromolecular complex;GO:0031981//nuclear lumen;GO:0000267//cell fraction	GO:0016491//oxidoreductase activity;GO:0005515//protein binding	"GO:0035556//intracellular signal transduction;GO:0006355//regulation of transcription, DNA-dependent;GO:0006886//intracellular protein transport"	gi|114576225|ref|XP_525684.2|/3.44955e-117/PREDICTED: similar to 14.3.3 protein [Pan troglodytes]
gnl|UG|Ssc#S56352047	0	0	0	0	4	1.2	"Sus scrofa argonaute 4 mRNA, complete cds /cds=p(1,2586) /gb=GQ329717 /gi=296840636 /ug=Ssc.75796 /len=2586"	GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding	GO:0006412//translation;GO:0006401//RNA catabolic process;GO:0035195//gene silencing by miRNA	gi|303227967|ref|NP_001181901.1|/0/protein argonaute-4 [Sus scrofa]
gnl|UG|Ssc#S35174299	0	0	4	1.14	0	0	"Sus scrofa mRNA, clone:AMP010021E02, expressed in alveolar macrophage /gb=AK230651 /gi=115545536 /ug=Ssc.51441 /len=2182"	GO:0031966//mitochondrial membrane;GO:0042579//microbody;GO:0044431//Golgi apparatus part;GO:0042598//vesicular fraction	GO:0017111//nucleoside-triphosphatase activity;GO:0019899//enzyme binding;GO:0032561	GO:0006915//apoptosis;GO:0009207;GO:0032501//multicellular organismal process;GO:0000266//mitochondrial fission	gi|301762428|ref|XP_002916635.1|/8.96161e-14/PREDICTED: dynamin-1-like protein-like isoform 3 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58307024	2	0.58	6	1.72	3	0.9	"PREDICTED: Sus scrofa progestin and adipoQ receptor family member 3-like (LOC100514591), mRNA /cds=p(1,936) /gb=XM_003129372 /gi=311262929 /ug=Ssc.24474 /len=1222"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity	GO:0023052//signaling	gi|311262930|ref|XP_003129420.1|/3.79552e-180/PREDICTED: progestin and adipoQ receptor family member 3-like [Sus scrofa]
gnl|UG|Ssc#S30065897	2	0.58	0	0	2	0.6	"Sus scrofa acyl-CoA synthetase long-chain family member 4 variant 1 (ACSL4) mRNA, complete cds, alternatively spliced /cds=p(137,2149) /gb=DQ144454 /gi=75706898 /ug=Ssc.95221 /len=4906"	GO:0044297//cell body;GO:0031966//mitochondrial membrane;GO:0031224//intrinsic to membrane;GO:0044439;GO:0042598//vesicular fraction	GO:0015645//fatty acid ligase activity;GO:0032559	GO:0006869//lipid transport;GO:0035336//long-chain fatty-acyl-CoA metabolic process;GO:0007610//behavior;GO:0034097//response to cytokine stimulus;GO:0006631//fatty acid metabolic process;GO:0048856//anatomical structure development;GO:0048609//multicellular organismal reproductive process;GO:0006641//triglyceride metabolic process;GO:0031667//response to nutrient levels	gi|84619524|ref|NP_001033783.1|/0/long-chain-fatty-acid--CoA ligase 4 [Sus scrofa]
gnl|UG|Ssc#S58304011	5	1.44	10	2.86	8	2.4	"PREDICTED: Sus scrofa plexin-D1-like (LOC100512922), mRNA /cds=p(1,6027) /gb=XM_003132386 /gi=311269313 /ug=Ssc.1551 /len=7065"	GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0004888//transmembrane receptor activity	GO:0001525//angiogenesis;GO:0006935//chemotaxis;GO:0023052//signaling;GO:0060600	gi|311269314|ref|XP_003132434.1|/0/PREDICTED: plexin-D1-like [Sus scrofa]
gnl|UG|Ssc#S58302711	58	16.7	36	10.29	32	9.62	"PREDICTED: Sus scrofa cullin-3-like (LOC100511787), partial mRNA /cds=p(1,2748) /gb=XM_003133685 /gi=311273139 /ug=Ssc.2636 /len=3933"	GO:0043231//intracellular membrane-bounded organelle;GO:0031461//cullin-RING ubiquitin ligase complex;GO:0000922//spindle pole	GO:0019787//small conjugating protein ligase activity;GO:0019899//enzyme binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0007266//Rho protein signal transduction;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051017//actin filament bundle assembly;GO:0008283//cell proliferation;GO:0048870//cell motility;GO:0043009//chordate embryonic development;GO:0007067//mitosis;GO:0006917//induction of apoptosis;GO:0000904//cell morphogenesis involved in differentiation;GO:0051789//response to protein stimulus;GO:0032446//protein modification by small protein conjugation;GO:0048598//embryonic morphogenesis	"gi|311273140|ref|XP_003133733.1|/0/PREDICTED: cullin-3-like, partial [Sus scrofa]"
gnl|UG|Ssc#S35170194	3	0.86	0	0	4	1.2	"Sus scrofa mRNA, clone:TES010027F04, expressed in testis /gb=AK238453 /gi=115549645 /ug=Ssc.19557 /len=1504"	GO:0031332;GO:0044444//cytoplasmic part	GO:0042802//identical protein binding;GO:0003723//RNA binding	"GO:0016246//RNA interference;GO:0033673//negative regulation of kinase activity;GO:0006355//regulation of transcription, DNA-dependent;GO:0044267//cellular protein metabolic process;GO:0050687//negative regulation of defense response to virus;GO:0035196//production of miRNAs involved in gene silencing by miRNA;GO:0045069//regulation of viral genome replication"	gi|311255463|ref|XP_003126242.1|/4.74895e-146/PREDICTED: RISC-loading complex subunit TARBP2-like [Sus scrofa]
gnl|UG|Ssc#S46877539	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) (BAP1), mRNA /cds=p(1,2742) /gb=XM_001925236 /gi=311269000 /ug=Ssc.1809 /len=3937"	GO:0031519//PcG protein complex;GO:0031981//nuclear lumen	GO:0005488//binding;GO:0016790//thiolester hydrolase activity;GO:0019783//small conjugating protein-specific protease activity	GO:0016049//cell growth;GO:0007049//cell cycle;GO:0019941//modification-dependent protein catabolic process;GO:0035521;GO:0008283//cell proliferation	gi|311269001|ref|XP_001925271.2|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase BAP1 [Sus scrofa]
gnl|UG|Ssc#S58308432	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa metalloendopeptidase OMA1, mitochondrial-like (LOC100526174), mRNA /cds=p(20,1393) /gb=XM_003127966 /gi=311259262 /ug=Ssc.40688 /len=1393"	GO:0005740//mitochondrial envelope;GO:0031224//intrinsic to membrane	GO:0004175//endopeptidase activity;GO:0043169//cation binding	GO:0019538//protein metabolic process	"gi|311259263|ref|XP_003128014.1|/0/PREDICTED: metalloendopeptidase OMA1, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58310832	2	0.58	14	4	2	0.6	"PREDICTED: Sus scrofa RNA binding motif protein 12B (RBM12B), mRNA /cds=p(191,3151) /gb=XM_003125566 /gi=311253625 /ug=Ssc.32661 /len=4165"	-	GO:0005488//binding	-	gi|311253626|ref|XP_003125614.1|/0/PREDICTED: RNA-binding protein 12B-like [Sus scrofa]
gnl|UG|Ssc#S35173504	5	1.44	11	3.14	3	0.9	"Sus scrofa mRNA, clone:AMP010053G11, expressed in alveolar macrophage /gb=AK230850 /gi=115546331 /ug=Ssc.37482 /len=2674"	-	-	-	-
gnl|UG|Ssc#S58314289	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa disabled homolog 2-interacting protein-like (LOC100515644), partial mRNA /cds=p(1,2125) /gb=XM_003122118 /gi=311246323 /ug=Ssc.21502 /len=2247"	GO:0009898//internal side of plasma membrane;GO:0044424//intracellular part	"GO:0008047//enzyme activator activity;GO:0060090//binding, bridging;GO:0005083//small GTPase regulator activity;GO:0042802//identical protein binding;GO:0019901//protein kinase binding;GO:0019903//protein phosphatase binding;GO:0032813//tumor necrosis factor receptor superfamily binding"	GO:0006915//apoptosis;GO:0035411//catenin import into nucleus;GO:0016049//cell growth;GO:0032318//regulation of Ras GTPase activity;GO:0034260//negative regulation of GTPase activity;GO:0043433//negative regulation of transcription factor activity;GO:0001837//epithelial to mesenchymal transition;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0006469//negative regulation of protein kinase activity;GO:0070849//response to epidermal growth factor stimulus;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0007173//epidermal growth factor receptor signaling pathway;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0008285//negative regulation of cell proliferation;GO:0010631//epithelial cell migration;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0000187//activation of MAPK activity;GO:0034612//response to tumor necrosis factor	"gi|311246324|ref|XP_003122166.1|/0/PREDICTED: disabled homolog 2-interacting protein-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58301566	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa prolow-density lipoprotein receptor-related protein 1-like (LOC100517740), mRNA /cds=p(1,1281) /gb=XM_003134833 /gi=311275719 /ug=Ssc.82672 /len=1281"	GO:0043005//neuron projection;GO:0005626//insoluble fraction;GO:0030135//coated vesicle;GO:0044297//cell body;GO:0016021//integral to membrane;GO:0012505//endomembrane system	GO:0004871//signal transducer activity;GO:0046872//metal ion binding;GO:0019899//enzyme binding;GO:0034185//apolipoprotein binding	GO:0006909//phagocytosis;GO:0044260;GO:0016055//Wnt receptor signaling pathway;GO:0051050//positive regulation of transport;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0010874//regulation of cholesterol efflux;GO:0045767//regulation of anti-apoptosis;GO:0010517//regulation of phospholipase activity;GO:0032502//developmental process;GO:0032501//multicellular organismal process	gi|311275720|ref|XP_003134881.1|/0/PREDICTED: prolow-density lipoprotein receptor-related protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55325128	20	5.76	28	8	13	3.91	"Sus scrofa mRNA, clone:PTG010082E02, expressed in pituitary gland /gb=AK349480 /gi=288779744 /ug=Ssc.26188 /len=1384"	-	-	-	gi|311268213|ref|XP_003131944.1|/1.73872e-14/PREDICTED: hypothetical protein LOC100525952 [Sus scrofa]
gnl|UG|Ssc#S46878808	158	45.49	36	10.29	162	48.69	"PREDICTED: Sus scrofa transmembrane trafficking protein (LOC100158015), mRNA /cds=p(53,712) /gb=XM_001926711 /gi=311261355 /ug=Ssc.9761 /len=3765"	GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0030667//secretory granule membrane;GO:0048770;GO:0042598//vesicular fraction;GO:0005798//Golgi-associated vesicle	GO:0005515//protein binding	GO:0006996//organelle organization;GO:0006903//vesicle targeting;GO:0006887//exocytosis;GO:0048513//organ development;GO:0015031//protein transport;GO:0010033//response to organic substance	gi|194038586|ref|XP_001926746.1|/1.51163e-115/PREDICTED: transmembrane emp24 domain-containing protein 10 [Sus scrofa]
gnl|UG|Ssc#S18554957	0	0	0	0	3	0.9	"BX923608 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0014.m.01 5prim, mRNA sequence /clone=scan0014.m.01 /clone_end=5' /gb=BX923608 /gi=90228363 /ug=Ssc.28371 /len=838"	GO:0044421//extracellular region part	GO:0004175//endopeptidase activity	GO:0032501//multicellular organismal process;GO:0019538//protein metabolic process	gi|297284271|ref|XP_001089922.2|/5.92105e-123/PREDICTED: chymotrypsin-like [Macaca mulatta]
gnl|UG|Ssc#S58311442	269	77.45	232	66.32	205	61.61	"PREDICTED: Sus scrofa hypothetical protein LOC100524080 (LOC100524080), mRNA /cds=p(1,2403) /gb=XM_003124970 /gi=311252255 /ug=Ssc.4486 /len=4713"	-	GO:0046872//metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation	gi|311252256|ref|XP_003125018.1|/0/PREDICTED: hypothetical protein LOC100524080 [Sus scrofa]
gnl|UG|Ssc#S58310495	2	0.58	5	1.43	10	3.01	"PREDICTED: Sus scrofa metal response element binding transcription factor 2, transcript variant 2 (MTF2), mRNA /cds=p(291,2072) /gb=XM_003125904 /gi=311254778 /ug=Ssc.26360 /len=4155"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311254779|ref|XP_003125952.1|/0/PREDICTED: metal-response element-binding transcription factor 2-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55323960	12	3.45	2	0.57	6	1.8	"Sus scrofa mRNA, clone:AMP010021F05, expressed in alveolar macrophages /gb=AK343701 /gi=288780912 /ug=Ssc.20972 /len=2736"	GO:0043231//intracellular membrane-bounded organelle	GO:0016462//pyrophosphatase activity;GO:0032559	-	"gi|73996065|ref|XP_534778.2|/0/PREDICTED: similar to ATPase family, AAA domain containing 1 [Canis familiaris]"
gnl|UG|Ssc#S18545610	18	5.18	172	49.17	86	25.85	"BX914261 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0001.j.12 5prim, mRNA sequence /clone=scan0001.j.12 /clone_end=5' /gb=BX914261 /gi=90234545 /ug=Ssc.84813 /len=526"	-	-	-	-
gnl|UG|Ssc#S55318533	0	0	0	0	0	0	"Sus scrofa mRNA, clone:UTR010089B05, expressed in uterus /gb=AK352438 /gi=288786351 /ug=Ssc.27569 /len=2562"	-	-	-	gi|301776052|ref|XP_002923442.1|/0/PREDICTED: UPF0415 protein C7orf25-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58311304	12	3.45	31	8.86	14	4.21	"PREDICTED: Sus scrofa EH domain binding protein 1 (EHBP1), mRNA /cds=p(1,2982) /gb=XM_003125097 /gi=311252536 /ug=Ssc.5226 /len=3977"	GO:0044424//intracellular part	-	-	gi|311252537|ref|XP_003125145.1|/0/PREDICTED: EH domain-binding protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55316243	0	0	0	0	4	1.2	"FS690973 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRT10056D05 5', mRNA sequence /clone=OVRT10056D05 /clone_end=5' /gb=FS690973 /gi=288297821 /ug=Ssc.93636 /len=814"	GO:0016604//nuclear body;GO:0016585//chromatin remodeling complex	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	"GO:0016568//chromatin modification;GO:0006606//protein import into nucleus;GO:0032501//multicellular organismal process;GO:0006351//transcription, DNA-dependent"	gi|296479191|gb|DAA21306.1|/5.19772e-152/metastasis-associated protein 2-like [Bos taurus]
gnl|UG|Ssc#S34516575	0	0	0	0	7	2.1	"DB786867 full-length enriched swine cDNA library, adult adrenal gland Sus scrofa cDNA clone ADR010060F03 5', mRNA sequence /clone=ADR010060F03 /clone_end=5' /gb=DB786867 /gi=112770911 /ug=Ssc.39453 /len=841"	-	-	-	-
gnl|UG|Ssc#S26714024	11	3.17	17	4.86	9	2.7	"AJ950108 KN404_1 Sus scrofa cDNA clone C0007746f05 3', mRNA sequence /clone=C0007746f05 /clone_end=3' /gb=AJ950108 /gi=74366924 /ug=Ssc.1832 /len=881"	GO:0005681//spliceosomal complex	GO:0005488//binding	-	gi|306922392|ref|NP_001182450.1|/2.96012e-18/zinc finger CCHC-type and RNA binding motif 1 [Macaca mulatta] 
gnl|UG|Ssc#S35186241	102	29.37	24	6.86	58	17.43	"Sus scrofa cyclin D3 mRNA, complete cds /cds=p(1,879) /gb=DQ915494 /gi=115522018 /ug=Ssc.1686 /len=879"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0004674//protein serine/threonine kinase activity;GO:0019900//kinase binding	GO:0006024//glycosaminoglycan biosynthetic process;GO:0009725//response to hormone stimulus;GO:0009746;GO:0023052//signaling;GO:0042110//T cell activation;GO:0000079//regulation of cyclin-dependent protein kinase activity;GO:0008283//cell proliferation	gi|118403824|ref|NP_001072146.1|/1.79071e-140/cyclin D3 [Sus scrofa]
gnl|UG|Ssc#S58313646	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa mediator of RNA polymerase II transcription subunit 19-like (LOC100520359), mRNA /cds=p(1,786) /gb=XM_003122715 /gi=311247755 /ug=Ssc.58447 /len=2379"	GO:0043234//protein complex	GO:0005488//binding	-	gi|311247756|ref|XP_003122763.1|/3.93138e-95/PREDICTED: mediator of RNA polymerase II transcription subunit 19-like [Sus scrofa]
gnl|UG|Ssc#S35171979	31	8.93	15	4.29	37	11.12	"Sus scrofa mRNA, clone:OVRM10021A10, expressed in ovary /gb=AK234832 /gi=115547856 /ug=Ssc.7351 /len=2106"	-	-	-	-
gnl|UG|Ssc#S20116675	0	0	2	0.57	0	0	"Sus scrofa prohormone convertase (PC1/3), mRNA /cds=p(106,2367) /gb=NM_214038 /gi=47522895 /ug=Ssc.92884 /len=5044"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0044431//Golgi apparatus part;GO:0044297//cell body;GO:0033267//axon part;GO:0005783//endoplasmic reticulum;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity;GO:0017046//peptide hormone binding;GO:0005515//protein binding	GO:0009611//response to wounding;GO:0021536//diencephalon development;GO:0015980//energy derivation by oxidation of organic compounds;GO:0051605//protein maturation by peptide bond cleavage;GO:0006807//nitrogen compound metabolic process;GO:0006518//peptide metabolic process;GO:0014072;GO:0009058//biosynthetic process;GO:0034097//response to cytokine stimulus;GO:0010038//response to metal ion;GO:0030073//insulin secretion;GO:0048522;GO:0009746;GO:0031960//response to corticosteroid stimulus;GO:0009991//response to extracellular stimulus;GO:0002237//response to molecule of bacterial origin;GO:0033993//response to lipid	gi|47522896|ref|NP_999203.1|/0/prohormone convertase [Sus scrofa]
gnl|UG|Ssc#S58311759	35	10.08	22	6.29	46	13.82	"PREDICTED: Sus scrofa nmrA-like family domain-containing protein 1-like (LOC100511924), mRNA /cds=p(77,1054) /gb=XM_003124636 /gi=311251601 /ug=Ssc.11357 /len=1163"	GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311251602|ref|XP_003124684.1|/0/PREDICTED: nmrA-like family domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46881121	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa retinoid X receptor, alpha (RXRA), mRNA /cds=p(1,1395) /gb=XM_001927453 /gi=311246728 /ug=Ssc.15990 /len=1564"	-	-	-	-
gnl|UG|Ssc#S46875963	55	15.83	58	16.58	23	6.91	"PREDICTED: Sus scrofa nuclear receptor coactivator 6 (NCOA6), mRNA /cds=p(42,6227) /gb=XM_001929279 /gi=311274750 /ug=Ssc.4508 /len=6755"	GO:0031981//nuclear lumen;GO:0000267//cell fraction;GO:0034708	GO:0030528//transcription regulator activity;GO:0042974//retinoic acid receptor binding;GO:0003713//transcription coactivator activity;GO:0042802//identical protein binding;GO:0035258//steroid hormone receptor binding	"GO:0030097//hemopoiesis;GO:0048568//embryonic organ development;GO:0007417//central nervous system development;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006352//transcription initiation, DNA-dependent;GO:0006259//DNA metabolic process;GO:0006629//lipid metabolic process;GO:0009719;GO:0033554//cellular response to stress;GO:0031958"	gi|194044494|ref|XP_001929314.1|/0/PREDICTED: nuclear receptor coactivator 6 [Sus scrofa]
gnl|UG|Ssc#S46877272	275	79.17	742	212.1	166	49.89	"PREDICTED: Sus scrofa transmembrane 9 superfamily member 3 (TM9SF3), mRNA /cds=p(158,1921) /gb=XM_001925192 /gi=311271685 /ug=Ssc.41586 /len=3250"	GO:0031224//intrinsic to membrane	-	-	gi|60359970|dbj|BAD90204.1|/0/mKIAA4036 protein [Mus musculus]
gnl|UG|Ssc#S6031646	2	0.58	4	1.14	4	1.2	"235307 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BF189654 /gi=11073023 /ti=470934261 /ug=Ssc.80482 /len=414"	GO:0044427;GO:0031981//nuclear lumen;GO:0030529//ribonucleoprotein complex	GO:0043169//cation binding;GO:0043565//sequence-specific DNA binding;GO:0004518//nuclease activity	GO:0006259//DNA metabolic process;GO:0016311//dephosphorylation;GO:0006405//RNA export from nucleus;GO:0000956//nuclear-transcribed mRNA catabolic process	gi|301765308|ref|XP_002918074.1|/9.89486e-39/PREDICTED: telomerase-binding protein EST1A-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58301728	94	27.06	61	17.44	86	25.85	"PREDICTED: Sus scrofa muskelin 1 (LOC414428), mRNA /cds=p(13,2220) /gb=XM_003134667 /gi=311275388 /ug=Ssc.22840 /len=2455"	GO:0044424//intracellular part	GO:0005488//binding	GO:0023052//signaling;GO:0009987//cellular process	gi|301755312|ref|XP_002913489.1|/0/PREDICTED: muskelin-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58306246	12	3.45	3	0.86	7	2.1	"PREDICTED: Sus scrofa CAS1 domain containing 1 (CASD1), mRNA /cds=p(1,2394) /gb=XM_003130150 /gi=311264506 /ug=Ssc.6407 /len=3853"	GO:0031224//intrinsic to membrane	-	-	gi|311264507|ref|XP_003130198.1|/0/PREDICTED: CAS1 domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35167328	54	15.55	57	16.29	15	4.51	"Sus scrofa mRNA, clone:OVRM10189H07, expressed in ovary /gb=AK236416 /gi=115552411 /ug=Ssc.6934 /len=1580"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	"GO:0016597//amino acid binding;GO:0042083//5,10-methylenetetrahydrofolate-dependent methyltransferase activity"	GO:0019087//transformation of host cell by virus;GO:0002069;GO:0040007//growth;GO:0048017//inositol lipid-mediated signaling;GO:0006213//pyrimidine nucleoside metabolic process;GO:0017085//response to insecticide;GO:0006259//DNA metabolic process;GO:0009177;GO:0006730//one-carbon metabolic process;GO:0009112;GO:0009887//organ morphogenesis;GO:0000082//G1/S transition of mitotic cell cycle;GO:0031960//response to corticosteroid stimulus	gi|296222340|ref|XP_002757144.1|/4.879e-165/PREDICTED: thymidylate synthase-like isoform 1 [Callithrix jacchus]
gnl|UG|Ssc#S58303725	124	35.7	75	21.44	114	34.26	"PREDICTED: Sus scrofa n-alpha-acetyltransferase 50, NatE catalytic subunit-like (LOC100513438), mRNA /cds=p(306,815) /gb=XM_003132666 /gi=311269989 /ug=Ssc.10283 /len=3792"	GO:0044424//intracellular part	GO:0005488//binding;GO:0016407//acetyltransferase activity	GO:0006473//protein acetylation	"gi|148665617|gb|EDK98033.1|/1.2553e-93/N-acetyltransferase 13, isoform CRA_c [Mus musculus]"
gnl|UG|Ssc#S23757354	4	1.15	0	0	4	1.2	"1114385 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN114973 /gi=59809219 /ug=Ssc.57064 /len=786"	GO:0015630//microtubule cytoskeleton;GO:0030425//dendrite;GO:0044297//cell body;GO:0015629//actin cytoskeleton;GO:0044430//cytoskeletal part	GO:0015631//tubulin binding	GO:0043462//regulation of ATPase activity;GO:0030036//actin cytoskeleton organization;GO:0006936//muscle contraction	gi|311254760|ref|XP_003125950.1|/3.71578e-51/PREDICTED: calponin-3 [Sus scrofa]
gnl|UG|Ssc#S55321180	6	1.73	0	0	0	0	"Sus scrofa mRNA, clone:ITT010103G12, expressed in small intestine /gb=AK345307 /gi=288783692 /ug=Ssc.18569 /len=1797"	GO:0016020//membrane;GO:0005768//endosome	-	GO:0070838//divalent metal ion transport	gi|15079979|gb|AAH11775.1|/3.62028e-151/Non imprinted in Prader-Willi/Angelman syndrome 2 [Homo sapiens] 
gnl|UG|Ssc#S46875957	5	1.44	2	0.57	2	0.6	"PREDICTED: Sus scrofa myosin-7B-like (LOC100155469), mRNA /cds=p(1,3171) /gb=XM_001927374 /gi=311274757 /ug=Ssc.40838 /len=3222"	-	-	-	gi|311274758|ref|XP_001927409.2|/0/PREDICTED: myosin-7B-like [Sus scrofa]
gnl|UG|Ssc#S55326055	12	3.45	4	1.14	10	3.01	"Sus scrofa mRNA, clone:OVRM10211D07, expressed in ovary /gb=AK348596 /gi=288778771 /ug=Ssc.26272 /len=2310"	GO:0016021//integral to membrane;GO:0005626//insoluble fraction	-	-	gi|73997792|ref|XP_854630.1|/1.87541e-126/PREDICTED: similar to Tetraspanin-9 (Tspan-9) (Tetraspan NET-5) [Canis familiaris]
gnl|UG|Ssc#S58306515	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa serine/threonine-protein kinase SIK3-like (LOC100522265), mRNA /cds=p(1,3768) /gb=XM_003129876 /gi=311263959 /ug=Ssc.18189 /len=4017"	GO:0044424//intracellular part	GO:0046872//metal ion binding;GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|311263960|ref|XP_003129924.1|/0/PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase SIK3-like [Sus scrofa]
gnl|UG|Ssc#S40557584	8	2.3	6	1.72	12	3.61	"rthg02_g4.y1 thg Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW644297 /gi=183149433 /ug=Ssc.55415 /len=682"	-	-	-	-
gnl|UG|Ssc#S31119532	124	35.7	125	35.73	149	44.78	"1541912 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY423370 /gi=87224673 /ug=Ssc.89294 /len=711"	-	-	-	gi|119606394|gb|EAW85988.1|/3.56263e-07/hCG2041466 [Homo sapiens]
gnl|UG|Ssc#S58311958	3	0.86	0	0	10	3.01	"PREDICTED: Sus scrofa argininosuccinate lyase-like, transcript variant 1 (LOC100517757), mRNA /cds=p(90,1484) /gb=XM_003124443 /gi=311251191 /ug=Ssc.20648 /len=1528"	GO:0043005//neuron projection;GO:0031966//mitochondrial membrane;GO:0043025//neuronal cell body	GO:0016842	GO:0060538//skeletal muscle organ development;GO:0006575//cellular modified amino acid metabolic process;GO:0010243//response to organic nitrogen;GO:0033762//response to glucagon stimulus;GO:0006526//arginine biosynthetic process;GO:0007610//behavior;GO:0034612//response to tumor necrosis factor;GO:0001666//response to hypoxia;GO:0010038//response to metal ion;GO:0019627//urea metabolic process;GO:0048565//digestive tract development;GO:0051591//response to cAMP;GO:0034341//response to interferon-gamma;GO:0006536//glutamate metabolic process;GO:0002237//response to molecule of bacterial origin;GO:0051414//response to cortisol stimulus;GO:0060359//response to ammonium ion;GO:0031667//response to nutrient levels	gi|311251192|ref|XP_003124491.1|/0/PREDICTED: argininosuccinate lyase-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35172014	16	4.61	2	0.57	14	4.21	"Sus scrofa mRNA, clone:OVRM10017B09, expressed in ovary /gb=AK234797 /gi=115547821 /ug=Ssc.3528 /len=2037"	GO:0000323//lytic vacuole;GO:0033267//axon part;GO:0000267//cell fraction	GO:0008483//transaminase activity;GO:0016831//carboxy-lyase activity;GO:0048037//cofactor binding	GO:0006103//2-oxoglutarate metabolic process;GO:0006071//glycerol metabolic process;GO:0009064//glutamine family amino acid metabolic process;GO:0031960//response to corticosteroid stimulus;GO:0032868//response to insulin stimulus;GO:0006006//glucose metabolic process;GO:0055088//lipid homeostasis;GO:0006531//aspartate metabolic process	"gi|47522636|ref|NP_999092.1|/0/aspartate aminotransferase, cytoplasmic [Sus scrofa]"
gnl|UG|Ssc#S35172722	61	17.56	29	8.29	48	14.43	"Sus scrofa mRNA, clone:ITT010006B03, expressed in intestine /gb=AK231168 /gi=115547113 /ug=Ssc.15297 /len=1164"	-	-	-	-
gnl|UG|Ssc#S35168234	8	2.3	5	1.43	12	3.61	"Sus scrofa mRNA, clone:OVRM10155G11, expressed in ovary /gb=AK236134 /gi=115551456 /ug=Ssc.58378 /len=2124"	-	-	-	gi|258676922|gb|ACV87314.1|/8.69315e-06/IL-23 [Sus scrofa]
gnl|UG|Ssc#S23691023	4	1.15	2	0.57	4	1.2	"1096997 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN102122 /gi=59774898 /ug=Ssc.38650 /len=842"	-	-	-	-
gnl|UG|Ssc#S55327102	8	2.3	0	0	2	0.6	"Sus scrofa mRNA, clone:OVR010054H02, expressed in ovary /gb=AK347549 /gi=288576954 /ug=Ssc.28469 /len=2509"	-	GO:0017111//nucleoside-triphosphatase activity;GO:0032559	GO:0009207	gi|134085697|ref|NP_001076926.1|/0/ATP-binding cassette sub-family F member 3 [Bos taurus]
gnl|UG|Ssc#S55325923	120	34.55	426	121.77	195	58.6	"Sus scrofa mRNA, clone:PBL010007G04, expressed in peripheral blood mononuclear cells /gb=AK348728 /gi=288778903 /ug=Ssc.830 /len=1288"	GO:0022624	GO:0061135	"GO:0019882//antigen processing and presentation;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|47523632|ref|NP_999444.1|/6.25459e-104/proteasome activator complex subunit 2 [Sus scrofa]
gnl|UG|Ssc#S20938196	3	0.86	0	0	2	0.6	"AJ649919 CSEQRAN19 Sus scrofa cDNA clone C0003273_N24, mRNA sequence /clone=C0003273_N24 /gb=AJ649919 /gi=49326764 /ug=Ssc.85635 /len=466"	GO:0044424//intracellular part	GO:0016462//pyrophosphatase activity;GO:0043169//cation binding	-	gi|157822975|ref|NP_001100230.1|/3.48362e-79/uridine diphosphate glucose pyrophosphatase [Rattus norvegicus] 
gnl|UG|Ssc#S40813812	0	0	2	0.57	2	0.6	"Sus scrofa mRNA for insulin-regulated aminopeptidase (IRAP gene) /cds=p(598,3678) /gb=AJ309167 /gi=156763827 /ug=Ssc.2718 /len=4310"	GO:0016021//integral to membrane;GO:0044297//cell body;GO:0030141//stored secretory granule;GO:0042598//vesicular fraction	"GO:0046914//transition metal ion binding;GO:0008528//peptide receptor activity, G-protein coupled;GO:0008238//exopeptidase activity"	GO:0009719;GO:0003014//renal system process;GO:0043171//peptide catabolic process;GO:0048168//regulation of neuronal synaptic plasticity;GO:0019538//protein metabolic process;GO:0009057//macromolecule catabolic process;GO:0022414//reproductive process;GO:0007166//cell surface receptor linked signaling pathway	gi|157427709|ref|NP_001098761.1|/0/leucyl-cystinyl aminopeptidase [Sus scrofa]
gnl|UG|Ssc#S35170897	7	2.02	2	0.57	18	5.41	"Sus scrofa mRNA, clone:OVRM10071B07, expressed in ovary /gb=AK235345 /gi=115548942 /ug=Ssc.18246 /len=3285"	-	GO:0005488//binding	GO:0003002//regionalization	gi|311245722|ref|XP_003121934.1|/0/PREDICTED: protein AF-9-like [Sus scrofa]
gnl|UG|Ssc#S58309942	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa ecto-ADP-ribosyltransferase 4-like (LOC100152653), mRNA /cds=p(121,1173) /gb=XM_003126458 /gi=311256105 /ug=Ssc.15863 /len=2435"	-	-	-	-
gnl|UG|Ssc#S35164185	346	99.62	60	17.15	375	112.7	"Sus scrofa mRNA, clone:SPL010008E07, expressed in spleen /gb=AK237173 /gi=115555541 /ug=Ssc.9412 /len=1034"	GO:0043231//intracellular membrane-bounded organelle;GO:0005839//proteasome core complex	GO:0004175//endopeptidase activity;GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|7106387|ref|NP_036097.1|/1.14671e-131/proteasome subunit alpha type-5 [Mus musculus]
gnl|UG|Ssc#S58310413	3	0.86	0	0	8	2.4	"PREDICTED: Sus scrofa alpha-N-acetylgalactosaminidase-like (LOC100525697), mRNA /cds=p(120,1355) /gb=XM_003125987 /gi=311254981 /ug=Ssc.8873 /len=1870"	GO:0000323//lytic vacuole	GO:0042802//identical protein binding;GO:0043167//ion binding;GO:0015925;GO:0015929//hexosaminidase activity	GO:0006677;GO:0016137	gi|311254982|ref|XP_003126035.1|/0/PREDICTED: alpha-N-acetylgalactosaminidase-like [Sus scrofa]
gnl|UG|Ssc#S46879584	318	91.55	134	38.3	426	128.02	"PREDICTED: Sus scrofa poly(A) binding protein, cytoplasmic 1 (PABPC1), mRNA /cds=p(735,2645) /gb=XM_001927747 /gi=311253551 /ug=Ssc.41568 /len=3367"	GO:0005681//spliceosomal complex;GO:0044444//cytoplasmic part	GO:0003729//mRNA binding;GO:0005515//protein binding;GO:0090079	"GO:0006412//translation;GO:0000377;GO:0031124//mRNA 3'-end processing;GO:0043488//regulation of mRNA stability;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|41386798|ref|NP_776993.1|/0/polyadenylate-binding protein 1 [Bos taurus]
gnl|UG|Ssc#S40155272	416	119.77	103	29.44	302	90.76	"rhyp06c_g7.y1 hyp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW250179 /gi=182592857 /ug=Ssc.1311 /len=687"	GO:0005746//mitochondrial respiratory chain	GO:0050136//NADH dehydrogenase (quinone) activity	GO:0051234//establishment of localization;GO:0022904//respiratory electron transport chain	"gi|311275264|ref|XP_003134654.1|/1.92018e-39/PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S23212994	143	41.17	316	90.33	122	36.66	"Sus scrofa clone Clu_560.scr.msk.p1.Contig3, mRNA sequence /gb=AY610014 /gi=52351584 /ug=Ssc.5366 /len=1146"	"GO:0005774//vacuolar membrane;GO:0033176;GO:0033177//proton-transporting two-sector ATPase complex, proton-transporting domain"	GO:0019829//cation-transporting ATPase activity;GO:0015078//hydrogen ion transmembrane transporter activity;GO:0005488//binding	GO:0015992//proton transport;GO:0015031//protein transport;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0051452//intracellular pH reduction;GO:0034220//ion transmembrane transport;GO:0006875//cellular metal ion homeostasis	gi|311251856|ref|XP_003124792.1|/1.2354e-52/PREDICTED: v-type proton ATPase 16 kDa proteolipid subunit-like [Sus scrofa]
gnl|UG|Ssc#S46875869	4	1.15	0	0	4	1.2	"PREDICTED: Sus scrofa acyl-CoA thioesterase 8 (ACOT8), mRNA /cds=p(132,1085) /gb=XM_001928889 /gi=311274973 /ug=Ssc.74938 /len=1209"	GO:0044439	GO:0005488//binding;GO:0016289//CoA hydrolase activity	GO:0006996//organelle organization;GO:0051704;GO:0006732//coenzyme metabolic process;GO:0006635//fatty acid beta-oxidation;GO:0006694//steroid biosynthetic process	gi|194044687|ref|XP_001928924.1|/2.87469e-180/PREDICTED: acyl-coenzyme A thioesterase 8 [Sus scrofa]
gnl|UG|Ssc#S18552226	4	1.15	4	1.14	6	1.8	"BX920877 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0003.o.02 5prim, mRNA sequence /clone=scan0003.o.02 /clone_end=5' /gb=BX920877 /gi=90228567 /ug=Ssc.82292 /len=873"	-	-	-	-
gnl|UG|Ssc#S35166952	11	3.17	5	1.43	22	6.61	"Sus scrofa mRNA, clone:THY010098B12, expressed in thymus /gb=AK239380 /gi=115552787 /ug=Ssc.21956 /len=2374"	GO:0031981//nuclear lumen;GO:0005815//microtubule organizing center;GO:0000152//nuclear ubiquitin ligase complex;GO:0005819//spindle	GO:0005488//binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0007050//cell cycle arrest;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	gi|300794877|ref|NP_001179919.1|/0/cell division cycle protein 16 homolog [Bos taurus]
gnl|UG|Ssc#S23212788	5	1.44	0	0	0	0	"Sus scrofa clone Clu_9959.scr.msk.p1.Contig3, mRNA sequence /gb=AY610220 /gi=52351802 /ug=Ssc.19964 /len=974"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0051536//iron-sulfur cluster binding	GO:0031163	gi|55596270|ref|XP_525775.1|/4.26804e-125/PREDICTED: similar to HIRA interacting protein 5 isoform 8 [Pan troglodytes]
gnl|UG|Ssc#S39796904	7	2.02	2	0.57	13	3.91	"rcad32b_d14.y1 cag Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV892182 /gi=178515065 /ug=Ssc.64758 /len=491"	-	-	-	-
gnl|UG|Ssc#S22275782	0	0	2	0.57	0	0	"CJ012143 full-length enriched swine cDNA library, adult mesenteric lymph node Sus scrofa cDNA clone MLN01E100057 5', mRNA sequence /clone=MLN01E100057 /clone_end=5' /gb=CJ012143 /gi=54506672 /ug=Ssc.84000 /len=795"	-	-	-	-
gnl|UG|Ssc#S43509687	407	117.18	203	58.03	355	106.69	"Sus scrofa prefoldin subunit 4 (PFDN4), mRNA /cds=p(215,619) /gb=NM_001123160 /gi=178056566 /ug=Ssc.43556 /len=1425"	GO:0044444//cytoplasmic part;GO:0043234//protein complex	GO:0005515//protein binding	GO:0051084//'de novo' posttranslational protein folding	gi|178056567|ref|NP_001116632.1|/3.97133e-62/prefoldin subunit 4 [Sus scrofa]
gnl|UG|Ssc#S18556436	9	2.59	18	5.15	7	2.1	"BX925087 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0026.d.20 5prim, mRNA sequence /clone=scan0026.d.20 /clone_end=5' /gb=BX925087 /gi=90240961 /ug=Ssc.49516 /len=647"	-	-	-	-
gnl|UG|Ssc#S58303041	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa pleckstrin homology domain-containing family A member 2-like (LOC100522834), mRNA /cds=p(24,1301) /gb=XM_003133361 /gi=311272343 /ug=Ssc.44874 /len=2202"	GO:0016020//membrane;GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle	GO:0035091//phosphatidylinositol binding;GO:0019904//protein domain specific binding	-	gi|311272344|ref|XP_003133409.1|/0/PREDICTED: pleckstrin homology domain-containing family A member 2-like [Sus scrofa]
gnl|UG|Ssc#S58304422	117	33.68	152	43.45	195	58.6	"PREDICTED: Sus scrofa vesicle-associated membrane protein 2-like (LOC100513234), mRNA /cds=p(1,363) /gb=XM_003131977 /gi=311268372 /ug=Ssc.17491 /len=2052"	GO:0030658//transport vesicle membrane;GO:0044431//Golgi apparatus part;GO:0016021//integral to membrane;GO:0030139//endocytic vesicle;GO:0030667//secretory granule membrane;GO:0008021//synaptic vesicle;GO:0030665//clathrin coated vesicle membrane;GO:0042598//vesicular fraction;GO:0044459//plasma membrane part;GO:0031201//SNARE complex	GO:0008092//cytoskeletal protein binding;GO:0008289//lipid binding;GO:0019905//syntaxin binding	GO:0015980//energy derivation by oxidation of organic compounds;GO:0016044//cellular membrane organization;GO:0006887//exocytosis;GO:0048193//Golgi vesicle transport;GO:0065003;GO:0030073//insulin secretion;GO:0009746;GO:0001505//regulation of neurotransmitter levels	gi|311268373|ref|XP_003132025.1|/1.12148e-34/PREDICTED: vesicle-associated membrane protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58304173	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa tumor suppressor candidate 2-like (LOC100516644), mRNA /cds=p(151,483) /gb=XM_003132224 /gi=311268937 /ug=Ssc.50337 /len=1681"	-	GO:0005488//binding	GO:0007154//cell communication	gi|311268938|ref|XP_003132272.1|/2.15053e-33/PREDICTED: tumor suppressor candidate 2-like [Sus scrofa]
gnl|UG|Ssc#S35171588	6	1.73	6	1.72	5	1.5	"Sus scrofa mRNA, clone:ITT010072E10, expressed in intestine /gb=AK231461 /gi=115548247 /ug=Ssc.5264 /len=2143"	GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0043169//cation binding;GO:0019103//pyrimidine nucleotide binding;GO:0051748//UTP-monosaccharide-1-phosphate uridylyltransferase activity;GO:0048029//monosaccharide binding	GO:0046398//UDP-glucuronate metabolic process;GO:0006796//phosphate metabolic process;GO:0006006//glucose metabolic process;GO:0005977//glycogen metabolic process	gi|149727536|ref|XP_001494235.1|/0/PREDICTED: similar to UDP-glucose pyrophosphorylase isoform 2 [Equus caballus]
gnl|UG|Ssc#S46880402	8	2.3	4	1.14	5	1.5	"PREDICTED: Sus scrofa LMBR1 domain containing 1 (LMBRD1), mRNA /cds=p(1,1638) /gb=XM_001927266 /gi=311244087 /ug=Ssc.1211 /len=2084"	GO:0005764//lysosome;GO:0031224//intrinsic to membrane	GO:0019842//vitamin binding	GO:0051234//establishment of localization;GO:0051704	gi|311244088|ref|XP_001927301.2|/0/PREDICTED: LOW QUALITY PROTEIN: probable lysosomal cobalamin transporter [Sus scrofa]
gnl|UG|Ssc#S58304253	0	0	0	0	0	0	"PREDICTED: Sus scrofa SNF related kinase, transcript variant 1 (SNRK), mRNA /cds=p(304,2607) /gb=XM_003132143 /gi=311268748 /ug=Ssc.31600 /len=3554"	GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding;GO:0004672//protein kinase activity;GO:0032559	GO:0030097//hemopoiesis;GO:0006464//protein modification process;GO:0006796//phosphate metabolic process	gi|311268749|ref|XP_003132191.1|/0/PREDICTED: SNF-related serine/threonine-protein kinase-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58304310	257	73.99	188	53.74	150	45.08	"PREDICTED: Sus scrofa STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) (STT3B), mRNA /cds=p(1,2478) /gb=XM_003132088 /gi=311268622 /ug=Ssc.4236 /len=4048"	GO:0005789//endoplasmic reticulum membrane;GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0004576//oligosaccharyl transferase activity	GO:0006487//protein N-linked glycosylation	gi|311268623|ref|XP_003132136.1|/0/PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like [Sus scrofa]
gnl|UG|Ssc#S35168627	20	5.76	36	10.29	6	1.8	"Sus scrofa mRNA, clone:THY010047G06, expressed in thymus /gb=AK238924 /gi=115551063 /ug=Ssc.70269 /len=1644"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0044248//cellular catabolic process;GO:0048513//organ development;GO:0050794//regulation of cellular process;GO:0016043//cellular component organization;GO:0051716//cellular response to stimulus	gi|297682857|ref|XP_002819123.1|/2.35608e-93/PREDICTED: RB1-inducible coiled-coil protein 1 isoform 2 [Pongo abelii]
gnl|UG|Ssc#S58304679	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa growth arrest-specific 2 like 2 (GAS2L2), mRNA /cds=p(1,2631) /gb=XM_003131716 /gi=311267844 /ug=Ssc.94018 /len=2737"	-	-	-	gi|311267845|ref|XP_003131764.1|/0/PREDICTED: GAS2-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S46877829	6	1.73	3	0.86	3	0.9	"PREDICTED: Sus scrofa regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2, transcript variant 1 (RCBTB2), mRNA /cds=p(193,1899) /gb=XM_001928902 /gi=311266253 /ug=Ssc.46770 /len=3280"	-	GO:0005088//Ras guanyl-nucleotide exchange factor activity	-	gi|194040610|ref|XP_001928937.1|/0/PREDICTED: RCC1 and BTB domain-containing protein 2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58303016	0	0	2	0.57	3	0.9	"PREDICTED: Sus scrofa pro-neuregulin-1, membrane-bound isoform-like (LOC100511962), mRNA /cds=p(1,1692) /gb=XM_003133380 /gi=311272400 /ug=Ssc.37418 /len=1797"	GO:0044459//plasma membrane part;GO:0016021//integral to membrane;GO:0044424//intracellular part;GO:0045202//synapse;GO:0044421//extracellular region part	GO:0005102//receptor binding;GO:0000989//transcription factor binding transcription factor activity;GO:0030296//protein tyrosine kinase activator activity	GO:0055007//cardiac muscle cell differentiation;GO:0008284//positive regulation of cell proliferation;GO:0048732//gland development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0008645//hexose transport;GO:0016049//cell growth;GO:0051094//positive regulation of developmental process;GO:0034623;GO:0008366//axon ensheathment;GO:0030155//regulation of cell adhesion;GO:0045595//regulation of cell differentiation;GO:0043066//negative regulation of apoptosis;GO:0043393//regulation of protein binding;GO:0010659//cardiac muscle cell apoptosis;GO:0051046//regulation of secretion;GO:0035556//intracellular signal transduction;GO:0008015//blood circulation;GO:0045860//positive regulation of protein kinase activity;GO:0009611//response to wounding;GO:0014031//mesenchymal cell development	"gi|311272401|ref|XP_003133428.1|/0/PREDICTED: pro-neuregulin-1, membrane-bound isoform-like [Sus scrofa]"
gnl|UG|Ssc#S58304201	12	3.45	3	0.86	5	1.5	"PREDICTED: Sus scrofa ariadne homolog 2 (Drosophila) (ARIH2), mRNA /cds=p(314,1789) /gb=XM_003132197 /gi=311268876 /ug=Ssc.15452 /len=4030"	-	-	-	-
gnl|UG|Ssc#S55321784	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:ITT010010B06, expressed in small intestine /gb=AK344901 /gi=288783088 /ug=Ssc.50287 /len=1452"	GO:0043234//protein complex;GO:0005759//mitochondrial matrix	GO:0005488//binding;GO:0004738//pyruvate dehydrogenase activity	GO:0006007//glucose catabolic process;GO:0006086//acetyl-CoA biosynthetic process from pyruvate	gi|387011|gb|AAA60055.1|/0/pyruvate dehydrogenase E1-alpha precursor [Homo sapiens]
gnl|UG|Ssc#S23693351	21	6.05	34	9.72	25	7.51	"1100243 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN104450 /gi=59778514 /ug=Ssc.12583 /len=673"	-	-	-	"gi|194217642|ref|XP_001918191.1|/1.74591e-13/PREDICTED: similar to jumonji domain containing 3, histone lysine demethylase [Equus caballus]"
gnl|UG|Ssc#S35174095	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVR010018G08, expressed in ovary /gb=AK234173 /gi=115545740 /ug=Ssc.15219 /len=2261"	-	-	-	-
gnl|UG|Ssc#S58303711	35	10.08	17	4.86	24	7.21	"PREDICTED: Sus scrofa intraflagellar transport protein 57 homolog (LOC100519335), mRNA /cds=p(90,1379) /gb=XM_003132686 /gi=311270023 /ug=Ssc.13576 /len=1596"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0042995//cell projection	GO:0003676//nucleic acid binding	"GO:0006915//apoptosis;GO:0006351//transcription, DNA-dependent"	gi|311270024|ref|XP_003132734.1|/0/PREDICTED: intraflagellar transport protein 57 homolog [Sus scrofa]
gnl|UG|Ssc#S55321147	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:LNG010006D09, expressed in lung /gb=AK345340 /gi=288783725 /ug=Ssc.44722 /len=1525"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0012505//endomembrane system	GO:0015165//pyrimidine nucleotide sugar transmembrane transporter activity;GO:0005402	GO:0006818//hydrogen transport;GO:0019318//hexose metabolic process;GO:0006811//ion transport;GO:0015785//UDP-galactose transport	gi|5032211|ref|NP_005651.1|/6.2768e-170/UDP-galactose translocator isoform a [Homo sapiens]
gnl|UG|Ssc#S40291735	13	3.74	18	5.15	15	4.51	"rmed24c_h6.y1 med Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW386342 /gi=182738745 /ug=Ssc.12409 /len=449"	-	-	-	-
gnl|UG|Ssc#S58310971	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa zinc finger protein 251-like (LOC100512163), mRNA /cds=p(206,2056) /gb=XM_003125453 /gi=311253214 /ug=Ssc.3080 /len=2056"	-	-	-	-
gnl|UG|Ssc#S20937405	6	1.73	8	2.29	21	6.31	"AJ649128 CSEQRAN19 Sus scrofa cDNA clone C0003271_K03, mRNA sequence /clone=C0003271_K03 /gb=AJ649128 /gi=49325973 /ug=Ssc.85502 /len=519"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016620//oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;GO:0046914//transition metal ion binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0042802//identical protein binding;GO:0008289//lipid binding"	GO:0044282;GO:0008217//regulation of blood pressure;GO:0006067//ethanol metabolic process;GO:0016101//diterpenoid metabolic process;GO:0002237//response to molecule of bacterial origin;GO:0017014//protein nitrosylation;GO:0032502//developmental process;GO:0006950//response to stress	gi|186972146|ref|NP_001119592.1|/1.66077e-87/alcohol dehydrogenase class-3 [Rattus norvegicus]
gnl|UG|Ssc#S58304330	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa DNA-binding protein SATB1-like (LOC100519621), mRNA /cds=p(197,2479) /gb=XM_003132068 /gi=311268574 /ug=Ssc.23516 /len=3523"	GO:0034399//nuclear periphery;GO:0016604//nuclear body;GO:0000790//nuclear chromatin	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043566//structure-specific DNA binding	GO:0009605//response to external stimulus;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006915//apoptosis;GO:0051704;GO:0046632//alpha-beta T cell differentiation;GO:0006479//protein methylation;GO:0006325//chromatin organization;GO:0042098//T cell proliferation	gi|311268575|ref|XP_003132116.1|/0/PREDICTED: DNA-binding protein SATB1-like [Sus scrofa]
gnl|UG|Ssc#S55319175	39	11.23	0	0	39	11.72	"Sus scrofa mRNA, clone:MLN010002C04, expressed in mesenteric lymph nodes /gb=AK346516 /gi=288785709 /ug=Ssc.6417 /len=1916"	GO:0043231//intracellular membrane-bounded organelle;GO:0044459//plasma membrane part;GO:0030529//ribonucleoprotein complex	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0004871//signal transducer activity;GO:0005515//protein binding"	GO:0006396//RNA processing;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006796//phosphate metabolic process;GO:0007179//transforming growth factor beta receptor signaling pathway	gi|194211750|ref|XP_001497523.2|/0/PREDICTED: similar to serine/threonine kinase receptor associated protein [Equus caballus]
gnl|UG|Ssc#S21553636	46	13.24	39	11.15	30	9.02	"UMC-p4mm3-012-g01 4mm ovarian follicle p4mm Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO945013 /gi=51311772 /ug=Ssc.86399 /len=379"	-	-	-	-
gnl|UG|Ssc#S20936115	40	11.52	16	4.57	28	8.41	"AJ647838 CSEQRAN19 Sus scrofa cDNA clone C0003260_N09, mRNA sequence /clone=C0003260_N09 /gb=AJ647838 /gi=49324683 /ug=Ssc.85533 /len=507"	"GO:0033177//proton-transporting two-sector ATPase complex, proton-transporting domain;GO:0005743//mitochondrial inner membrane;GO:0033178//proton-transporting two-sector ATPase complex, catalytic domain"	GO:0017111//nucleoside-triphosphatase activity;GO:0015078//hydrogen ion transmembrane transporter activity;GO:0008289//lipid binding;GO:0005515//protein binding	GO:0022900//electron transport chain;GO:0006818//hydrogen transport;GO:0006839//mitochondrial transport;GO:0006754//ATP biosynthetic process;GO:0009207	"gi|20302061|ref|NP_620238.1|/4.2772e-85/ATP synthase subunit O, mitochondrial precursor [Rattus norvegicus]"
gnl|UG|Ssc#S19541035	0	0	0	0	2	0.6	"945807 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN157131 /gi=46171561 /ug=Ssc.24920 /len=880"	GO:0043231//intracellular membrane-bounded organelle	"GO:0003723//RNA binding;GO:0016627//oxidoreductase activity, acting on the CH-CH group of donors;GO:0050662//coenzyme binding"	GO:0006399//tRNA metabolic process	gi|115495449|ref|NP_001068887.1|/3.2815e-102/tRNA-dihydrouridine synthase 2-like [Bos taurus]
gnl|UG|Ssc#S58308043	0	0	0	0	0	0	"PREDICTED: Sus scrofa ribosomal protein S10, transcript variant 2 (RPS10), mRNA /cds=p(55,552) /gb=XM_003128348 /gi=311260268 /ug=Ssc.23186 /len=1070"	GO:0015935//small ribosomal subunit;GO:0031981//nuclear lumen	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0022618//ribonucleoprotein complex assembly	"gi|119624187|gb|EAX03782.1|/5.64126e-84/ribosomal protein S10, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S58307976	76	21.88	22	6.29	19	5.71	"PREDICTED: Sus scrofa solute carrier family 29 (nucleoside transporters), member 1 (SLC29A1), mRNA /cds=p(1,1839) /gb=XM_003128425 /gi=311260512 /ug=Ssc.1579 /len=3124"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0044459//plasma membrane part	"GO:0005488//binding;GO:0015932//nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter activity"	"GO:0001666//response to hypoxia;GO:0015864//pyrimidine nucleoside transport;GO:0051899//membrane depolarization;GO:0001678//cellular glucose homeostasis;GO:0007589//body fluid secretion;GO:0006139//nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;GO:0007610//behavior"	gi|311260513|ref|XP_003128473.1|/0/PREDICTED: equilibrative nucleoside transporter 1 [Sus scrofa]
gnl|UG|Ssc#S46880038	89	25.62	57	16.29	89	26.75	"PREDICTED: Sus scrofa mitogen-activated protein-binding protein-interacting protein-like (LOC100156749), mRNA /cds=p(442,819) /gb=XM_001928448 /gi=194036028 /ug=Ssc.854 /len=959"	GO:0005764//lysosome;GO:0031902//late endosome membrane	GO:0005488//binding	GO:0009967//positive regulation of signal transduction;GO:0000165//MAPKKK cascade;GO:0040007//growth;GO:0043200//response to amino acid stimulus;GO:0008104//protein localization	gi|7661728|ref|NP_054736.1|/1.55567e-63/mitogen-activated protein-binding protein-interacting protein isoform 1 [Homo sapiens]
gnl|UG|Ssc#S58307413	24	6.91	14	4	22	6.61	"PREDICTED: Sus scrofa cysteine-rich hydrophobic domain 2 protein-like, transcript variant 1 (LOC100524031), mRNA /cds=p(383,880) /gb=XM_003128983 /gi=311262134 /ug=Ssc.6586 /len=1479"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0016020//membrane	GO:0005488//binding	GO:0006892//post-Golgi vesicle-mediated transport	gi|6912276|ref|NP_036242.1|/5.82054e-72/cysteine-rich hydrophobic domain 2 protein [Homo sapiens]
gnl|UG|Ssc#S55323373	13	3.74	2	0.57	4	1.2	"Sus scrofa mRNA, clone:BKFL10043D09, expressed in back fat /gb=AK344108 /gi=288781499 /ug=Ssc.95830 /len=1339"	-	-	-	-
gnl|UG|Ssc#S58313588	18	5.18	4	1.14	13	3.91	"PREDICTED: Sus scrofa MAP kinase-activating death domain protein-like (LOC100514892), mRNA /cds=p(1,1098) /gb=XM_003122822 /gi=311247872 /ug=Ssc.3010 /len=2044"	-	-	-	-
gnl|UG|Ssc#S46878789	185	53.26	151	43.16	194	58.3	"PREDICTED: Sus scrofa AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) (AHSA1), mRNA /cds=p(165,1181) /gb=XM_001928890 /gi=311261390 /ug=Ssc.54115 /len=1441"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0005515//protein binding	GO:0050896//response to stimulus;GO:0044267//cellular protein metabolic process;GO:0043462//regulation of ATPase activity	gi|194038625|ref|XP_001928925.1|/0/PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Sus scrofa]
gnl|UG|Ssc#S58307201	6	1.73	3	0.86	4	1.2	"PREDICTED: Sus scrofa sodium channel and clathrin linker 1 (SCLT1), mRNA /cds=p(1,1725) /gb=XM_003129206 /gi=311262563 /ug=Ssc.62578 /len=2185"	GO:0016020//membrane	GO:0016247//channel regulator activity	GO:0045161//neuronal ion channel clustering	gi|311262564|ref|XP_003129254.1|/0/PREDICTED: sodium channel and clathrin linker 1-like [Sus scrofa]
gnl|UG|Ssc#S58312895	6	1.73	0	0	2	0.6	"PREDICTED: Sus scrofa small conductance calcium-activated potassium channel protein 1-like (LOC100519132), mRNA /cds=p(28,1908) /gb=XM_003123502 /gi=311249273 /ug=Ssc.5714 /len=1908"	GO:0005887//integral to plasma membrane	GO:0005515//protein binding;GO:0015269//calcium-activated potassium channel activity	GO:0034220//ion transmembrane transport;GO:0007267//cell-cell signaling;GO:0030001//metal ion transport	gi|311249274|ref|XP_003123550.1|/0/PREDICTED: small conductance calcium-activated potassium channel protein 1-like [Sus scrofa]
gnl|UG|Ssc#S23757085	2	0.58	0	0	0	0	"1114094 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN114704 /gi=59808739 /ug=Ssc.82670 /len=682"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0010876;GO:0006810//transport	gi|311251355|ref|XP_003124576.1|/1.99775e-65/PREDICTED: protein spinster homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S34502088	3	0.86	10	2.86	9	2.7	"DB814387 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10157D11 /clone_end=3' /gb=DB814387 /gi=112782855 /ug=Ssc.19313 /len=736"	-	-	-	-
gnl|UG|Ssc#S26725385	4	1.15	0	0	0	0	"AJ961469 KN404_2 Sus scrofa cDNA clone C0007758n07 3', mRNA sequence /clone=C0007758n07 /clone_end=3' /gb=AJ961469 /gi=74378285 /ug=Ssc.5017 /len=784"	-	-	-	-
gnl|UG|Ssc#S58313850	27	7.77	3	0.86	5	1.5	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase synoviolin-like (LOC100514334), mRNA /cds=p(96,1928) /gb=XM_003122541 /gi=311247336 /ug=Ssc.53723 /len=3068"	GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0031090//organelle membrane	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0043009//chordate embryonic development;GO:0043066//negative regulation of apoptosis;GO:0006950//response to stress	gi|73983706|ref|XP_540867.2|/0/PREDICTED: similar to synoviolin 1 isoform a [Canis familiaris]
gnl|UG|Ssc#S58305104	17	4.89	13	3.72	18	5.41	"PREDICTED: Sus scrofa mitogen-activated protein kinase kinase kinase 3-like (LOC100513491), mRNA /cds=p(1,2247) /gb=XM_003131293 /gi=311266972 /ug=Ssc.5280 /len=5319"	GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0032559;GO:0004702//receptor signaling protein serine/threonine kinase activity	GO:0006468//protein phosphorylation;GO:0007249//I-kappaB kinase/NF-kappaB cascade	gi|311266973|ref|XP_003131341.1|/0/PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Sus scrofa]
gnl|UG|Ssc#S58303033	6	1.73	5	1.43	5	1.5	"PREDICTED: Sus scrofa histone-lysine N-methyltransferase NSD3-like (LOC100521046), mRNA /cds=p(1,5007) /gb=XM_003133355 /gi=311272366 /ug=Ssc.4539 /len=5284"	GO:0043232	GO:0046914//transition metal ion binding;GO:0016279//protein-lysine N-methyltransferase activity	GO:0016571//histone methylation;GO:0040007//growth;GO:0048869	gi|311272367|ref|XP_003133403.1|/0/PREDICTED: histone-lysine N-methyltransferase NSD3-like [Sus scrofa]
gnl|UG|Ssc#S58301086	0	0	0	0	0	0	"PREDICTED: Sus scrofa AMME syndrome candidate gene 1 protein homolog (LOC100520351), mRNA /cds=p(1,1245) /gb=XM_003135311 /gi=311276787 /ug=Ssc.92740 /len=1375"	-	-	-	gi|311276788|ref|XP_003135359.1|/3.36045e-127/PREDICTED: AMME syndrome candidate gene 1 protein homolog [Sus scrofa]
gnl|UG|Ssc#S55318423	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:MLN010079C09, expressed in mesenteric lymph nodes /gb=AK346943 /gi=288786461 /ug=Ssc.5734 /len=995"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0016882//cyclo-ligase activity;GO:0016597//amino acid binding;GO:0032559	GO:0032787//monocarboxylic acid metabolic process;GO:0006760//folic acid-containing compound metabolic process	gi|311260624|ref|XP_001925822.2|/1.61314e-34/PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Sus scrofa]
gnl|UG|Ssc#S58304670	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa transmembrane protein 98-like (LOC100520269), mRNA /cds=p(166,846) /gb=XM_003131728 /gi=311267863 /ug=Ssc.11555 /len=1510"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311267864|ref|XP_003131776.1|/5.6929e-115/PREDICTED: transmembrane protein 98-like [Sus scrofa]
gnl|UG|Ssc#S58305729	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa kinesin family member 24 (KIF24), mRNA /cds=p(1,3894) /gb=XM_003130663 /gi=311265568 /ug=Ssc.60560 /len=4420"	GO:0005856//cytoskeleton	GO:0003774//motor activity;GO:0000166//nucleotide binding	-	gi|311265569|ref|XP_003130711.1|/0/PREDICTED: kinesin-like protein KIF24-like [Sus scrofa]
gnl|UG|Ssc#S35168168	3	0.86	0	0	6	1.8	"Sus scrofa mRNA, clone:THY010053E07, expressed in thymus /gb=AK238986 /gi=115551522 /ug=Ssc.1547 /len=1578"	GO:0005746//mitochondrial respiratory chain	GO:0043169//cation binding;GO:0051536//iron-sulfur cluster binding;GO:0000166//nucleotide binding;GO:0050136//NADH dehydrogenase (quinone) activity	GO:0022904//respiratory electron transport chain;GO:0051234//establishment of localization	"gi|311247118|ref|XP_003122486.1|/0/PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S35167452	6	1.73	4	1.14	6	1.8	"Sus scrofa mRNA, clone:AMP010014B06, expressed in alveolar macrophage /gb=AK230596 /gi=115552287 /ug=Ssc.78615 /len=2670"	GO:0016020//membrane;GO:0015629//actin cytoskeleton;GO:0044444//cytoplasmic part	GO:0008092//cytoskeletal protein binding	GO:0007010//cytoskeleton organization;GO:0032989;GO:0007599//hemostasis;GO:0045762//positive regulation of adenylate cyclase activity;GO:0006887//exocytosis;GO:0023052//signaling;GO:0006897//endocytosis;GO:0006935//chemotaxis;GO:0001775//cell activation;GO:0016477//cell migration	"gi|148698452|gb|EDL30399.1|/0/CAP, adenylate cyclase-associated protein 1 (yeast), isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S46879538	3	0.86	5	1.43	11	3.31	"PREDICTED: Sus scrofa transmembrane protein 55A-like (LOC100156639), mRNA /cds=p(213,986) /gb=XM_001928423 /gi=311253641 /ug=Ssc.62826 /len=986"	GO:0005764//lysosome;GO:0031224//intrinsic to membrane;GO:0005770//late endosome	GO:0003824//catalytic activity	-	gi|194037070|ref|XP_001928458.1|/3.20034e-152/PREDICTED: transmembrane protein 55A-like [Sus scrofa]
gnl|UG|Ssc#S58312473	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa septin 8 (SEPT8), mRNA /cds=p(96,1547) /gb=XM_003123926 /gi=311250136 /ug=Ssc.2749 /len=1547"	GO:0032156	GO:0032561	GO:0009987//cellular process	gi|27448552|gb|AAO13879.1|AF440762_1/0/septin SEPT8_v2 [Homo sapiens]
gnl|UG|Ssc#S34500333	4	1.15	3	0.86	2	0.6	"DB812237 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10025C04 /clone_end=3' /gb=DB812237 /gi=112773563 /ug=Ssc.31683 /len=761"	-	-	-	-
gnl|UG|Ssc#S46876173	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa storkhead box 2, transcript variant 2 (STOX2), mRNA /cds=p(1,2781) /gb=XM_001925419 /gi=311272293 /ug=Ssc.94794 /len=2781"	-	-	GO:0001890//placenta development	gi|194044052|ref|XP_001925454.1|/0/PREDICTED: storkhead-box protein 2 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S46879991	0	0	0	0	0	0	"PREDICTED: Sus scrofa solute carrier family 27 (fatty acid transporter), member 3 (SLC27A3), mRNA /cds=p(1,2028) /gb=XM_001929591 /gi=311254248 /ug=Ssc.47851 /len=2161"	GO:0005740//mitochondrial envelope;GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0015645//fatty acid ligase activity;GO:0016408	GO:0006732//coenzyme metabolic process;GO:0006869//lipid transport;GO:0006631//fatty acid metabolic process	gi|311254249|ref|XP_001929626.2|/0/PREDICTED: long-chain fatty acid transport protein 3 [Sus scrofa]
gnl|UG|Ssc#S40436538	0	0	2	0.57	0	0	"rret30_j14.y1 ret Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW531144 /gi=183041532 /ug=Ssc.40350 /len=605"	-	-	-	-
gnl|UG|Ssc#S35171430	0	0	7	2	2	0.6	"Sus scrofa mRNA, clone:OVRM10042E03, expressed in ovary /gb=AK235026 /gi=115548409 /ug=Ssc.6155 /len=2821"	GO:0000323//lytic vacuole	GO:0004175//endopeptidase activity	GO:0019538//protein metabolic process;GO:0002376//immune system process	gi|311263676|ref|XP_003129789.1|/2.75112e-50/PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa]
gnl|UG|Ssc#S58310545	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa choline/ethanolaminephosphotransferase 1-like (LOC100154792), mRNA /cds=p(129,1349) /gb=XM_003125857 /gi=311254608 /ug=Ssc.38486 /len=1563"	GO:0005635//nuclear envelope;GO:0031090//organelle membrane;GO:0031224//intrinsic to membrane	GO:0043169//cation binding;GO:0017169//CDP-alcohol phosphatidyltransferase activity	GO:0006656//phosphatidylcholine biosynthetic process	gi|311254609|ref|XP_003125905.1|/0/PREDICTED: LOW QUALITY PROTEIN: choline/ethanolaminephosphotransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S58310207	4	1.15	0	0	7	2.1	"PREDICTED: Sus scrofa mitogen-activated protein kinase kinase kinase 12 (MAP3K12), mRNA /cds=p(44,2722) /gb=XM_003126192 /gi=311255460 /ug=Ssc.46411 /len=2722"	GO:0005626//insoluble fraction;GO:0030424//axon;GO:0044444//cytoplasmic part;GO:0016020//membrane;GO:0030427//site of polarized growth	GO:0004674//protein serine/threonine kinase activity;GO:0019900//kinase binding;GO:0042802//identical protein binding;GO:0000166//nucleotide binding	GO:0006468//protein phosphorylation;GO:0000165//MAPKKK cascade	gi|311255461|ref|XP_003126240.1|/0/PREDICTED: mitogen-activated protein kinase kinase kinase 12-like [Sus scrofa]
gnl|UG|Ssc#S55322339	12	3.45	0	0	5	1.5	"Sus scrofa mRNA, clone:DCI010071G01, expressed in dendritic cells (immature) /gb=AK344544 /gi=288782533 /ug=Ssc.24966 /len=1454"	GO:0043232;GO:0044444//cytoplasmic part	"GO:0043168;GO:0002054;GO:0016763//transferase activity, transferring pentosyl groups"	GO:0009435//NAD biosynthetic process;GO:0042221//response to chemical stimulus;GO:0046102;GO:0046495//nicotinamide riboside metabolic process;GO:0009112;GO:0045582//positive regulation of T cell differentiation;GO:0006163//purine nucleotide metabolic process;GO:0032623//interleukin-2 production;GO:0042098//T cell proliferation	gi|194038973|ref|XP_001929258.1|/3.58744e-167/PREDICTED: purine nucleoside phosphorylase [Sus scrofa]
gnl|UG|Ssc#S58313563	81	23.32	34	9.72	62	18.63	"PREDICTED: Sus scrofa PHD finger protein 21A (PHF21A), mRNA /cds=p(361,2268) /gb=XM_003122830 /gi=311247922 /ug=Ssc.38077 /len=2557"	GO:0031981//nuclear lumen;GO:0016585//chromatin remodeling complex	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007599//hemostasis;GO:0006325//chromatin organization	gi|311247923|ref|XP_003122878.1|/0/PREDICTED: PHD finger protein 21A-like [Sus scrofa]
gnl|UG|Ssc#S55319280	214	61.61	420	120.06	153	45.98	"Sus scrofa mRNA, clone:LVRM10169E10, expressed in liver /gb=AK346412 /gi=288785604 /ug=Ssc.26464 /len=2765"	GO:0016021//integral to membrane;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0051234//establishment of localization	gi|197100024|ref|NP_001126027.1|/0/transmembrane 9 superfamily member 2 precursor [Pongo abelii]
gnl|UG|Ssc#S58302065	13	3.74	3	0.86	0	0	"PREDICTED: Sus scrofa nucleolar protein 56-like (LOC100512446), mRNA /cds=p(32,1816) /gb=XM_003134335 /gi=311274573 /ug=Ssc.53732 /len=1926"	GO:0005732//small nucleolar ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0003723//RNA binding	GO:0042254//ribosome biogenesis	gi|311274574|ref|XP_003134383.1|/0/PREDICTED: nucleolar protein 56-like [Sus scrofa]
gnl|UG|Ssc#S35172846	0	0	0	0	0	0	"Sus scrofa mRNA, clone:AMP010085H07, expressed in alveolar macrophage /gb=AK231044 /gi=115546989 /ug=Ssc.84301 /len=2035"	GO:0044429//mitochondrial part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|311244159|ref|XP_003121335.1|/5.03433e-112/PREDICTED: probable arginyl-tRNA synthetase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35165919	0	0	0	0	0	0	"Sus scrofa mRNA, clone:PBL010010H02, expressed in periphral blood mononuclear cell /gb=AK236812 /gi=115553807 /ug=Ssc.11134 /len=2357"	GO:0030532//small nuclear ribonucleoprotein complex;GO:0016604//nuclear body	GO:0005488//binding	GO:0000377	gi|301760056|ref|XP_002915829.1|/0/PREDICTED: u4/U6 small nuclear ribonucleoprotein Prp4-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58303702	0	0	3	0.86	6	1.8	"PREDICTED: Sus scrofa NF-kappa-B inhibitor zeta-like (LOC100520981), mRNA /cds=p(1,2175) /gb=XM_003132694 /gi=311270043 /ug=Ssc.9372 /len=3538"	GO:0043231//intracellular membrane-bounded organelle	-	"GO:0006351//transcription, DNA-dependent;GO:0006952//defense response"	gi|311270044|ref|XP_003132742.1|/0/PREDICTED: NF-kappa-B inhibitor zeta-like [Sus scrofa]
gnl|UG|Ssc#S46876235	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa cell division cycle associated 7, transcript variant 1 (CDCA7), mRNA /cds=p(10,1368) /gb=XM_001928628 /gi=311272649 /ug=Ssc.45017 /len=2915"	-	-	GO:0008283//cell proliferation	gi|194043923|ref|XP_001928663.1|/0/PREDICTED: cell division cycle-associated protein 7 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58304624	0	0	0	0	0	0	"PREDICTED: Sus scrofa stromal cell-derived factor 2-like (LOC100514983), mRNA /cds=p(329,964) /gb=XM_003131773 /gi=311267962 /ug=Ssc.31141 /len=1597"	GO:0044421//extracellular region part;GO:0044464//cell part	GO:0000030//mannosyltransferase activity	GO:0006464//protein modification process	gi|311267963|ref|XP_003131821.1|/6.35423e-112/PREDICTED: stromal cell-derived factor 2-like [Sus scrofa]
gnl|UG|Ssc#S58307641	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa protein KIAA0284-like (LOC100521503), mRNA /cds=p(1,4629) /gb=XM_003128745 /gi=311261652 /ug=Ssc.91877 /len=4629"	-	-	-	gi|311261653|ref|XP_003128793.1|/0/PREDICTED: protein KIAA0284-like [Sus scrofa]
gnl|UG|Ssc#S26721251	5	1.44	0	0	0	0	"AJ957335 KN404_2 Sus scrofa cDNA clone C0007754m07 3', mRNA sequence /clone=C0007754m07 /clone_end=3' /gb=AJ957335 /gi=74374151 /ug=Ssc.94881 /len=943"	-	-	-	-
gnl|UG|Ssc#S46876863	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa (TAF5L), mRNA /cds=p(189,1958) /gb=XM_001927954 /gi=311271193 /ug=Ssc.72252 /len=2210"	GO:0070461//SAGA-type complex;GO:0005667//transcription factor complex	GO:0003712//transcription cofactor activity;GO:0004468//lysine N-acetyltransferase activity;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent;GO:0016573//histone acetylation"	gi|194042629|ref|XP_001927989.1|/0/PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L-like [Sus scrofa]
gnl|UG|Ssc#S31102977	3	0.86	5	1.43	3	0.9	"1499897 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY406815 /gi=87208118 /ug=Ssc.33530 /len=701"	-	-	-	-
gnl|UG|Ssc#S55319818	636	183.11	1069	305.57	606	182.12	"Sus scrofa mRNA, clone:THY010113F05, expressed in thymus /gb=AK351947 /gi=288785066 /ug=Ssc.81313 /len=2503"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0000377	gi|111494085|gb|AAI10390.1|/0/HNRPR protein [Homo sapiens]
gnl|UG|Ssc#S58307685	34	9.79	29	8.29	40	12.02	"PREDICTED: Sus scrofa GSK3-beta interaction protein-like (LOC100154584), mRNA /cds=p(102,521) /gb=XM_003128713 /gi=311261542 /ug=Ssc.1084 /len=2535"	GO:0044424//intracellular part	GO:0005488//binding	-	gi|311261543|ref|XP_003128761.1|/7.0335e-74/PREDICTED: GSK3-beta interaction protein-like [Sus scrofa]
gnl|UG|Ssc#S35167700	22	6.33	9	2.57	27	8.11	"Sus scrofa mRNA, clone:THY010081C08, expressed in thymus /gb=AK239232 /gi=115552039 /ug=Ssc.94851 /len=2309"	GO:0031981//nuclear lumen	-	-	gi|296482332|gb|DAA24447.1|/0/WD repeat domain 43 [Bos taurus]
gnl|UG|Ssc#S58304990	3	0.86	0	0	5	1.5	"PREDICTED: Sus scrofa histone acetyltransferase KAT2A-like, transcript variant 2 (LOC100524215), mRNA /cds=p(57,2594) /gb=XM_003131406 /gi=311267202 /ug=Ssc.28296 /len=3098"	GO:0070461//SAGA-type complex;GO:0005667//transcription factor complex	GO:0010485//H4 histone acetyltransferase activity;GO:0003712//transcription cofactor activity;GO:0019899//enzyme binding	"GO:0043967//histone H4 acetylation;GO:0014020;GO:0040007//growth;GO:0009952//anterior/posterior pattern formation;GO:0006355//regulation of transcription, DNA-dependent;GO:0030902//hindbrain development;GO:0030900//forebrain development;GO:0006915//apoptosis;GO:0043966//histone H3 acetylation;GO:0051704"	gi|311267203|ref|XP_003131454.1|/0/PREDICTED: histone acetyltransferase KAT2A-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58310555	4	1.15	0	0	5	1.5	"PREDICTED: Sus scrofa Mov10, Moloney leukemia virus 10, homolog (mouse) (MOV10), mRNA /cds=p(1,3102) /gb=XM_003125852 /gi=311254572 /ug=Ssc.19573 /len=3342"	GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding;GO:0017111//nucleoside-triphosphatase activity;GO:0032559	GO:0006379//mRNA cleavage;GO:0016458//gene silencing	gi|311254573|ref|XP_003125900.1|/0/PREDICTED: putative helicase MOV-10-like [Sus scrofa]
gnl|UG|Ssc#S55324068	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:SMG010101F05, expressed in submaxillary gland /gb=AK350140 /gi=288780804 /ug=Ssc.32984 /len=1256"	GO:0043234//protein complex	-	GO:0006887//exocytosis	gi|114578125|ref|XP_515544.2|/2.75271e-157/PREDICTED: hypothetical protein [Pan troglodytes]
gnl|UG|Ssc#S58313580	8	2.3	6	1.72	9	2.7	"PREDICTED: Sus scrofa protein kinase C and casein kinase substrate in neurons 3 (PACSIN3), mRNA /cds=p(125,1399) /gb=XM_003122811 /gi=311247888 /ug=Ssc.21952 /len=1846"	GO:0044431//Golgi apparatus part;GO:0016020//membrane	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0005515//protein binding"	GO:0006796//phosphate metabolic process;GO:0031331;GO:0030100//regulation of endocytosis	gi|311247889|ref|XP_003122859.1|/0/PREDICTED: protein kinase C and casein kinase substrate in neurons protein 3-like [Sus scrofa]
gnl|UG|Ssc#S18385669	0	0	0	0	2	0.6	"936956 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK465814 /gi=40837091 /ug=Ssc.27348 /len=782"	-	GO:0046872//metal ion binding;GO:0004518//nuclease activity	-	gi|296473339|gb|DAA15454.1|/1.13534e-60/ERI1 exoribonuclease family member 2 [Bos taurus]
gnl|UG|Ssc#S58301416	0	0	5	1.43	3	0.9	"PREDICTED: Sus scrofa kelch-like protein 15-like (LOC100157468), mRNA /cds=p(1,1815) /gb=XM_003134978 /gi=311276047 /ug=Ssc.94874 /len=1815"	-	-	-	gi|311276048|ref|XP_003135026.1|/0/PREDICTED: kelch-like protein 15-like [Sus scrofa]
gnl|UG|Ssc#S35170353	48	13.82	115	32.87	29	8.72	"Sus scrofa mRNA, clone:OVRM10089A04, expressed in ovary /gb=AK235508 /gi=115549486 /ug=Ssc.38084 /len=2752"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0004779//sulfate adenylyltransferase activity;GO:0016301//kinase activity;GO:0032559	GO:0048731;GO:0006796//phosphate metabolic process;GO:0006790//sulfur compound metabolic process;GO:0034036	gi|297293177|ref|XP_001085840.2|/0/PREDICTED: bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 isoform 4 [Macaca mulatta]
gnl|UG|Ssc#S17504854	2	0.58	0	0	0	0	"885289 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF792366 /gi=37796927 /ug=Ssc.22362 /len=742"	-	-	-	-
gnl|UG|Ssc#S29460347	2	0.58	2	0.57	3	0.9	"POSM0605010_H20R porcine skeletal muscle cDNA library (PoSM) Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DV899051 /gi=82924562 /ug=Ssc.87962 /len=368"	-	-	-	-
gnl|UG|Ssc#S29979429	5	1.44	0	0	3	0.9	"PDUts1147F11 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1147F11 5' similar to homologue to ref|NM_212539.1| Homo sapiens protein kinase C, delta (PRKCD), transcript variant 2, mRNA, mRNA sequence /clone=PDUts1147F11 /clone_end=5' /gb=CV876087 /gi=84130047 /ug=Ssc.34139 /len=703"	GO:0034399//nuclear periphery;GO:0005626//insoluble fraction;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0030234//enzyme regulator activity;GO:0004697//protein kinase C activity;GO:0019900//kinase binding;GO:0032559;GO:0019904//protein domain specific binding;GO:0043169//cation binding	GO:0015711//organic anion transport;GO:0006915//apoptosis;GO:0043405//regulation of MAP kinase activity;GO:0042113//B cell activation;GO:0010828//positive regulation of glucose transport;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0019724//B cell mediated immunity;GO:0010863//positive regulation of phospholipase C activity;GO:0001933//negative regulation of protein phosphorylation;GO:0007569//cell aging;GO:0019221//cytokine-mediated signaling pathway;GO:0012502//induction of programmed cell death;GO:0016070//RNA metabolic process;GO:0007599//hemostasis;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0043393//regulation of protein binding;GO:0009968//negative regulation of signal transduction;GO:0006950//response to stress;GO:0044259;GO:0031647//regulation of protein stability;GO:0001816//cytokine production	gi|296474779|gb|DAA16894.1|/2.35079e-112/protein kinase C delta type [Bos taurus]
gnl|UG|Ssc#S58304478	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa mediator of RNA polymerase II transcription subunit 11-like, transcript variant 1 (LOC100513494), mRNA /cds=p(54,407) /gb=XM_003131912 /gi=311268257 /ug=Ssc.18018 /len=810"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0016251//general RNA polymerase II transcription factor activity;GO:0005488//binding	"GO:0006355//regulation of transcription, DNA-dependent"	gi|73955429|ref|XP_849319.1|/5.63071e-58/PREDICTED: similar to CG6884-PA [Canis familiaris]
gnl|UG|Ssc#S58302314	15	4.32	3	0.86	20	6.01	"PREDICTED: Sus scrofa hyaluronan mediated motility receptor-like (LOC100515063), mRNA /cds=p(61,2205) /gb=XM_003134082 /gi=311273978 /ug=Ssc.50588 /len=3271"	GO:0044424//intracellular part	GO:0005539//glycosaminoglycan binding	GO:0007154//cell communication;GO:0006996//organelle organization	gi|311273979|ref|XP_003134130.1|/0/PREDICTED: hyaluronan mediated motility receptor-like [Sus scrofa]
gnl|UG|Ssc#S20937758	57	16.41	12	3.43	21	6.31	"AJ649481 CSEQRAN19 Sus scrofa cDNA clone C0003272_J19, mRNA sequence /clone=C0003272_J19 /gb=AJ649481 /gi=49326326 /ug=Ssc.85487 /len=549"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0003697//single-stranded DNA binding	GO:0050657;GO:0006396//RNA processing	"gi|148666221|gb|EDK98637.1|/8.73369e-80/mCG119114, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S35164629	16	4.61	14	4	5	1.5	"Sus scrofa mRNA, clone:UTR010051G04, expressed in uterus /gb=AK240296 /gi=115555097 /ug=Ssc.11002 /len=1917"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0032559	GO:0051084//'de novo' posttranslational protein folding	gi|281427370|ref|NP_001163993.1|/0/T-complex protein 1 subunit eta [Sus scrofa]
gnl|UG|Ssc#S58307139	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa SEC24 family, member B (S. cerevisiae) (SEC24B), mRNA /cds=p(1,2772) /gb=XM_003129267 /gi=311262688 /ug=Ssc.10099 /len=3558"	GO:0012507//ER to Golgi transport vesicle membrane	GO:0046914//transition metal ion binding	GO:0006901//vesicle coating;GO:0048193//Golgi vesicle transport;GO:0015031//protein transport;GO:0006487//protein N-linked glycosylation	gi|311262689|ref|XP_003129315.1|/0/PREDICTED: protein transport protein Sec24B-like [Sus scrofa]
gnl|UG|Ssc#S35173567	81	23.32	11	3.14	44	13.22	"Sus scrofa mRNA, clone:UTR010085A02, expressed in uterus /gb=AK240506 /gi=115546268 /ug=Ssc.72334 /len=1995"	GO:0043005//neuron projection;GO:0016020//membrane	GO:0005488//binding	GO:0007411//axon guidance	gi|57109544|ref|XP_535747.1|/2.83577e-51/PREDICTED: similar to Neuromodulin (Axonal membrane protein GAP-43) (Growth associated protein 43) (PP46) (Neural phosphoprotein B-50) [Canis familiaris]
gnl|UG|Ssc#S55318794	170	48.94	502	143.5	102	30.65	"Sus scrofa mRNA, clone:UTR010066D12, expressed in uterus /gb=AK352376 /gi=288786090 /ug=Ssc.81350 /len=1030"	GO:0031981//nuclear lumen;GO:0000776//kinetochore;GO:0005635//nuclear envelope	GO:0032559;GO:0004812//aminoacyl-tRNA ligase activity	GO:0050658//RNA transport;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0006418//tRNA aminoacylation for protein translation;GO:0006605//protein targeting;GO:0015758//glucose transport	gi|270309140|ref|NP_598541.3|/1.1866e-112/nuclear pore complex-associated protein Tpr [Mus musculus]
gnl|UG|Ssc#S55234352	16	4.61	0	0	7	2.1	"UMC-pmpIIs_0-001-e01 Pig Metaphase II Sow/BoMed pmpIIs Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=GT641650 /gi=269804513 /ug=Ssc.56328 /len=646"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding	GO:0048731;GO:0008283//cell proliferation;GO:0010467//gene expression;GO:0006875//cellular metal ion homeostasis	gi|301753819|ref|XP_002912822.1|/7.30072e-83/PREDICTED: LOW QUALITY PROTEIN: calcium homeostasis endoplasmic reticulum protein-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58308348	15	4.32	2	0.57	6	1.8	"PREDICTED: Sus scrofa uroporphyrinogen decarboxylase-like (LOC100514239), mRNA /cds=p(56,1159) /gb=XM_003128049 /gi=311259433 /ug=Ssc.6659 /len=1235"	GO:0005856//cytoskeleton;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0016831//carboxy-lyase activity;GO:0005506//iron ion binding	GO:0010038//response to metal ion;GO:0010243//response to organic nitrogen;GO:0043627//response to estrogen stimulus;GO:0009636//response to toxin;GO:0048513//organ development;GO:0006779//porphyrin biosynthetic process;GO:0006725//cellular aromatic compound metabolic process;GO:0046685//response to arsenic-containing substance	gi|311259434|ref|XP_003128097.1|/0/PREDICTED: uroporphyrinogen decarboxylase-like [Sus scrofa]
gnl|UG|Ssc#S20935685	2	0.58	3	0.86	4	1.2	"AJ647408 CSEQRAN19 Sus scrofa cDNA clone C0003105_J12, mRNA sequence /clone=C0003105_J12 /gb=AJ647408 /gi=49324253 /ug=Ssc.85511 /len=353"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|293348040|ref|XP_001077681.2|/3.05132e-64/PREDICTED: similar to zinc finger protein 277 isoform 1 [Rattus norvegicus]
gnl|UG|Ssc#S58305889	9	2.59	2	0.57	8	2.4	"PREDICTED: Sus scrofa serine/threonine-protein kinase MARK1-like (LOC100519380), mRNA /cds=p(1,975) /gb=XM_003130518 /gi=311265238 /ug=Ssc.18756 /len=975"	GO:0005856//cytoskeleton	GO:0046872//metal ion binding;GO:0004672//protein kinase activity;GO:0032559	GO:0035556//intracellular signal transduction;GO:0006464//protein modification process;GO:0007010//cytoskeleton organization;GO:0006796//phosphate metabolic process	gi|311265239|ref|XP_003130566.1|/0/PREDICTED: serine/threonine-protein kinase MARK1-like [Sus scrofa]
gnl|UG|Ssc#S58303778	10	2.88	17	4.86	6	1.8	"PREDICTED: Sus scrofa zinc finger protein 148-like, transcript variant 1 (LOC100515279), mRNA /cds=p(422,2806) /gb=XM_003132619 /gi=311269867 /ug=Ssc.43872 /len=3145"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0003702//RNA polymerase II transcription factor activity;GO:0043566//structure-specific DNA binding	GO:0006952//defense response;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0019953//sexual reproduction;GO:0065003	gi|311269868|ref|XP_003132667.1|/0/PREDICTED: zinc finger protein 148-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35168930	4	1.15	0	0	4	1.2	"Sus scrofa mRNA, clone:OVRM10126E02, expressed in ovary /gb=AK235927 /gi=115550852 /ug=Ssc.5030 /len=2603"	GO:0044424//intracellular part	GO:0042802//identical protein binding;GO:0046914//transition metal ion binding	GO:0051259//protein oligomerization	gi|113205582|ref|NP_001037997.1|/0/tripartite motif protein TRIM5 [Sus scrofa]
gnl|UG|Ssc#S58310751	3	0.86	3	0.86	6	1.8	"PREDICTED: Sus scrofa hypothetical protein LOC100516190 (LOC100516190), mRNA /cds=p(1,2172) /gb=XM_003125648 /gi=311253924 /ug=Ssc.22894 /len=2596"	GO:0031981//nuclear lumen;GO:0043234//protein complex	GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0003677//DNA binding	GO:0001501//skeletal system development;GO:0030097//hemopoiesis;GO:0045596//negative regulation of cell differentiation;GO:0008202//steroid metabolic process;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0003006//developmental process involved in reproduction;GO:0008283//cell proliferation;GO:0035108//limb morphogenesis;GO:0001503//ossification;GO:0043392//negative regulation of DNA binding;GO:0003002//regionalization;GO:0048754//branching morphogenesis of a tube;GO:0009887//organ morphogenesis;GO:0035270//endocrine system development	gi|311253925|ref|XP_003125696.1|/0/PREDICTED: hypothetical protein LOC100516190 [Sus scrofa]
gnl|UG|Ssc#S55326654	0	0	4	1.14	2	0.6	"Sus scrofa mRNA, clone:OVRM10038G02, expressed in ovary /gb=AK347997 /gi=288778172 /ug=Ssc.30979 /len=1378"	GO:0016020//membrane;GO:0044424//intracellular part	"GO:0032561;GO:0005515//protein binding;GO:0008047//enzyme activator activity;GO:0032559;GO:0016776//phosphotransferase activity, phosphate group as acceptor"	GO:0043087//regulation of GTPase activity;GO:0032989;GO:0009209//pyrimidine ribonucleoside triphosphate biosynthetic process;GO:0006457//protein folding;GO:0050953//sensory perception of light stimulus;GO:0009206;GO:0009132//nucleoside diphosphate metabolic process	"gi|170785131|pdb|3BH6|B/0/Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp"
gnl|UG|Ssc#S58309472	8	2.3	2	0.57	6	1.8	"PREDICTED: Sus scrofa protein FAM65A-like (LOC100522138), mRNA /cds=p(99,3755) /gb=XM_003126930 /gi=311257139 /ug=Ssc.40712 /len=5228"	GO:0044424//intracellular part	-	-	gi|311257140|ref|XP_003126978.1|/0/PREDICTED: protein FAM65A-like [Sus scrofa]
gnl|UG|Ssc#S26722427	6	1.73	4	1.14	8	2.4	"AJ958511 KN404_2 Sus scrofa cDNA clone C0007760h21 5', mRNA sequence /clone=C0007760h21 /clone_end=5' /gb=AJ958511 /gi=74375327 /ug=Ssc.36017 /len=871"	GO:0043231//intracellular membrane-bounded organelle	GO:0003677//DNA binding;GO:0004386//helicase activity;GO:0032559	"GO:0009314//response to radiation;GO:0000725//recombinational repair;GO:0042221//response to chemical stimulus;GO:0006351//transcription, DNA-dependent"	gi|300794189|ref|NP_001179884.1|/8.72561e-140/RAD54 homolog B [Bos taurus]
gnl|UG|Ssc#S46876404	38	10.94	101	28.87	26	7.81	"PREDICTED: Sus scrofa golgin A3 (GOLGA3), partial mRNA /cds=p(259,4221) /gb=XM_001926990 /gi=311270513 /ug=Ssc.32673 /len=4221"	GO:0012505//endomembrane system;GO:0043234//protein complex;GO:0044431//Golgi apparatus part;GO:0016020//membrane	GO:0005488//binding	-	"gi|311270514|ref|XP_001927025.2|/0/PREDICTED: Golgin subfamily A member 3, partial [Sus scrofa]"
gnl|UG|Ssc#S18333036	2	0.58	0	0	0	0	"BP460102 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRM10170F09 5', mRNA sequence /clone=OVRM10170F09 /clone_end=5' /gb=BP460102 /gi=40475845 /ug=Ssc.84438 /len=699"	GO:0031224//intrinsic to membrane	-	-	gi|194216606|ref|XP_001492754.2|/5.53095e-90/PREDICTED: similar to UNC93-like protein MFSD11 [Equus caballus]
gnl|UG|Ssc#S58306314	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa sorting nexin 19 (SNX19), mRNA /cds=p(1,3009) /gb=XM_003130084 /gi=311264366 /ug=Ssc.24343 /len=5216"	-	-	-	gi|311264367|ref|XP_003130132.1|/0/PREDICTED: sorting nexin-19-like [Sus scrofa]
gnl|UG|Ssc#S58314835	6	1.73	2	0.57	3	0.9	"PREDICTED: Sus scrofa zinc finger protein 106 homolog (mouse) (ZFP106), mRNA /cds=p(326,5968) /gb=XM_003121568 /gi=311244902 /ug=Ssc.13616 /len=7548"	GO:0044444//cytoplasmic part;GO:0005626//insoluble fraction;GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0019904//protein domain specific binding;GO:0005102//receptor binding	GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|311244903|ref|XP_003121616.1|/0/PREDICTED: zinc finger protein 106 homolog [Sus scrofa]
gnl|UG|Ssc#S58308481	24	6.91	27	7.72	9	2.7	"PREDICTED: Sus scrofa far upstream element (FUSE) binding protein 1 (FUBP1), mRNA /cds=p(398,2332) /gb=XM_003127917 /gi=311259161 /ug=Ssc.9439 /len=2714"	GO:0031981//nuclear lumen	GO:0043566//structure-specific DNA binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|194377024|dbj|BAG63073.1|/0/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S20935872	61	17.56	100	28.58	65	19.53	"AJ647595 CSEQRAN19 Sus scrofa cDNA clone C0003260_C01, mRNA sequence /clone=C0003260_C01 /gb=AJ647595 /gi=49324440 /ug=Ssc.74075 /len=512"	GO:0001739//sex chromatin	GO:0005488//binding;GO:0003712//transcription cofactor activity	"GO:0006629//lipid metabolic process;GO:0051726//regulation of cell cycle;GO:0006355//regulation of transcription, DNA-dependent;GO:0014706//striated muscle tissue development"	"gi|149036195|gb|EDL90861.1|/2.4751e-72/rCG38713, isoform CRA_c [Rattus norvegicus]"
gnl|UG|Ssc#S35166772	5	1.44	3	0.86	4	1.2	"Sus scrofa mRNA, clone:THY010112C05, expressed in thymus /gb=AK239553 /gi=115552967 /ug=Ssc.16009 /len=1916"	-	-	-	-
gnl|UG|Ssc#S55326792	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:OVRM10005D06, expressed in ovary /gb=AK347859 /gi=288778034 /ug=Ssc.33071 /len=1897"	GO:0043231//intracellular membrane-bounded organelle	GO:0017111//nucleoside-triphosphatase activity;GO:0005083//small GTPase regulator activity;GO:0032561;GO:0032559	GO:0019222//regulation of metabolic process;GO:0009207;GO:0016197//endosome transport	gi|40788968|dbj|BAA74901.2|/0/KIAA0878 protein [Homo sapiens]
gnl|UG|Ssc#S58311695	42	12.09	40	11.43	44	13.22	"PREDICTED: Sus scrofa WD repeat domain 24 (WDR24), mRNA /cds=p(594,2966) /gb=XM_003124706 /gi=311251733 /ug=Ssc.24515 /len=3025"	-	-	-	gi|311251734|ref|XP_003124754.1|/0/PREDICTED: WD repeat-containing protein 24-like [Sus scrofa]
gnl|UG|Ssc#S55319146	5	1.44	3	0.86	5	1.5	"Sus scrofa mRNA, clone:MLN010009A11, expressed in mesenteric lymph nodes /gb=AK346545 /gi=288785738 /ug=Ssc.86713 /len=1532"	-	-	-	gi|296490646|gb|DAA32759.1|/8.80538e-172/Lunapark [Bos taurus]
gnl|UG|Ssc#S55319762	0	0	0	0	4	1.2	"Sus scrofa mRNA, clone:LVRM10069B08, expressed in liver /gb=AK346129 /gi=288785122 /ug=Ssc.38892 /len=2519"	-	-	-	-
gnl|UG|Ssc#S58304196	101	29.08	221	63.17	75	22.54	"PREDICTED: Sus scrofa inosine-5'-monophosphate dehydrogenase 2-like (LOC100525485), mRNA /cds=p(98,1714) /gb=XM_003132201 /gi=311268886 /ug=Ssc.19937 /len=1764"	GO:0044444//cytoplasmic part	"GO:0043169//cation binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"	GO:0032943//mononuclear cell proliferation;GO:0009168//purine ribonucleoside monophosphate biosynthetic process;GO:0009112	gi|114586834|ref|XP_516452.2|/0/PREDICTED: inosine monophosphate dehydrogenase 2 [Pan troglodytes]
gnl|UG|Ssc#S46879111	8	2.3	2	0.57	9	2.7	"PREDICTED: Sus scrofa coagulation factor XIII, A1 polypeptide (F13A1), mRNA /cds=p(1,2208) /gb=XM_001927630 /gi=311259680 /ug=Ssc.26345 /len=3836"	GO:0031091//platelet alpha granule	"GO:0043169//cation binding;GO:0016755;GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups"	GO:0001775//cell activation;GO:0006887//exocytosis;GO:0007599//hemostasis;GO:0006464//protein modification process	gi|194037961|ref|XP_001927665.1|/0/PREDICTED: coagulation factor XIII A chain [Sus scrofa]
gnl|UG|Ssc#S35164774	13	3.74	4	1.14	4	1.2	"Sus scrofa mRNA, clone:UTR010035F02, expressed in uterus /gb=AK240151 /gi=115554952 /ug=Ssc.21891 /len=2787"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|301785381|ref|XP_002928101.1|/0/PREDICTED: phosphorylated CTD-interacting factor 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46876631	0	0	0	0	0	0	"PREDICTED: Sus scrofa ubiquitin protein ligase E3B (UBE3B), mRNA /cds=p(275,3484) /gb=XM_001929210 /gi=311270786 /ug=Ssc.2673 /len=3484"	GO:0044464//cell part	GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination	gi|311270787|ref|XP_001929245.2|/0/PREDICTED: ubiquitin-protein ligase E3B [Sus scrofa]
gnl|UG|Ssc#S29980021	0	0	2	0.57	2	0.6	"PDUts1154H06 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1154H06 5', mRNA sequence /clone=PDUts1154H06 /clone_end=5' /gb=CV876679 /gi=84130639 /ug=Ssc.34102 /len=583"	-	-	-	-
gnl|UG|Ssc#S58303361	164	47.22	32	9.15	107	32.16	"PREDICTED: Sus scrofa heterogeneous nuclear ribonucleoprotein F (HNRNPF), mRNA /cds=p(557,1801) /gb=XM_003133036 /gi=311271227 /ug=Ssc.7119 /len=2974"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0003723//RNA binding;GO:0008134//transcription factor binding	GO:0010468//regulation of gene expression;GO:0000377	gi|194042670|ref|XP_001929076.1|/0/PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35171742	26	7.49	5	1.43	22	6.61	"Sus scrofa mRNA, clone:TCH010039B10, expressed in trachea /gb=AK238077 /gi=115548093 /ug=Ssc.21873 /len=1681"	GO:0043231//intracellular membrane-bounded organelle	GO:0043566//structure-specific DNA binding	-	gi|78369226|ref|NP_001030350.1|/3.08931e-165/single-stranded DNA-binding protein 4 [Bos taurus]
gnl|UG|Ssc#S55244014	0	0	4	1.14	0	0	"FS673533 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010031B01 5', mRNA sequence /clone=KDN010031B01 /clone_end=5' /gb=FS673533 /gi=288233243 /ug=Ssc.20774 /len=888"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	-	gi|301753601|ref|XP_002912615.1|/1.2157e-136/PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat and KH domain-containing protein 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58310527	6	1.73	2	0.57	8	2.4	"PREDICTED: Sus scrofa G-protein signaling modulator 2 (GPSM2), mRNA /cds=p(276,2321) /gb=XM_003125873 /gi=311254672 /ug=Ssc.13626 /len=2905"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0005515//protein binding	GO:0043087//regulation of GTPase activity;GO:0007166//cell surface receptor linked signaling pathway	gi|311254673|ref|XP_003125921.1|/0/PREDICTED: G-protein-signaling modulator 2-like [Sus scrofa]
gnl|UG|Ssc#S58310548	5	1.44	2	0.57	3	0.9	"PREDICTED: Sus scrofa CTTNBP2 N-terminal-like protein-like (LOC100520738), mRNA /cds=p(189,2108) /gb=XM_003125850 /gi=311254586 /ug=Ssc.13187 /len=2886"	GO:0005856//cytoskeleton	GO:0005488//binding	-	gi|311254587|ref|XP_003125898.1|/0/PREDICTED: CTTNBP2 N-terminal-like protein-like [Sus scrofa]
gnl|UG|Ssc#S58329906	82	23.61	29	8.29	56	16.83	"Sus scrofa ankyrin repeat domain 17 (ANKRD17) mRNA, complete cds /cds=p(1,7092) /gb=HQ697264 /gi=315321423 /ug=Ssc.20079 /len=8602"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0051704	gi|297466675|ref|XP_001251904.2|/0/PREDICTED: ankyrin repeat domain protein 17 isoform 3 [Bos taurus]
gnl|UG|Ssc#S58301362	18	5.18	20	5.72	27	8.11	"PREDICTED: Sus scrofa calcium/calmodulin-dependent serine protein kinase (MAGUK family) (CASK), mRNA /cds=p(1,2706) /gb=XM_003135036 /gi=311276175 /ug=Ssc.22137 /len=3922"	GO:0005856//cytoskeleton;GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	"GO:0005515//protein binding;GO:0004672//protein kinase activity;GO:0016776//phosphotransferase activity, phosphate group as acceptor;GO:0032559"	GO:0006464//protein modification process	gi|311276176|ref|XP_003135084.1|/0/PREDICTED: peripheral plasma membrane protein CASK-like [Sus scrofa]
gnl|UG|Ssc#S58313051	0	0	0	0	0	0	"PREDICTED: Sus scrofa zinc finger SWIM domain-containing protein 4-like (LOC100510892), mRNA /cds=p(1,2970) /gb=XM_003123348 /gi=311248957 /ug=Ssc.30856 /len=3185"	-	GO:0046914//transition metal ion binding	-	gi|311248958|ref|XP_003123396.1|/0/PREDICTED: zinc finger SWIM domain-containing protein 4-like [Sus scrofa]
gnl|UG|Ssc#S50197454	12	3.45	5	1.43	5	1.5	"susfleck_FC_N_16_D10 SUSFLECK Fat Cell Normalized Sus scrofa cDNA clone 16_D10, mRNA sequence /clone=16_D10 /gb=FD629290 /gi=221002374 /ug=Ssc.41747 /len=685"	-	-	-	gi|311245753|ref|XP_003121947.1|/1.42734e-26/PREDICTED: hypothetical protein LOC100513260 [Sus scrofa]
gnl|UG|Ssc#S55324658	2	0.58	3	0.86	2	0.6	"Sus scrofa mRNA, clone:ADR010058G01, expressed in adrenal gland /gb=AK343398 /gi=288780214 /ug=Ssc.65099 /len=1785"	GO:0031224//intrinsic to membrane	GO:0003824//catalytic activity	-	gi|114557943|ref|XP_513585.2|/1.10796e-176/PREDICTED: phosphatidic acid phosphatase type 2d [Pan troglodytes]
gnl|UG|Ssc#S58303252	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa polycomb group RING finger protein 5-like (LOC100522283), mRNA /cds=p(1,771) /gb=XM_003133143 /gi=311271617 /ug=Ssc.43502 /len=1125"	GO:0005815//microtubule organizing center	GO:0046914//transition metal ion binding	GO:0010467//gene expression	gi|311271618|ref|XP_003133191.1|/7.86574e-145/PREDICTED: polycomb group RING finger protein 5-like [Sus scrofa]
gnl|UG|Ssc#S35168953	0	0	4	1.14	0	0	"Sus scrofa mRNA, clone:OVRM10125D08, expressed in ovary /gb=AK235916 /gi=115550841 /ug=Ssc.11757 /len=2138"	GO:0031224//intrinsic to membrane;GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0019866//organelle inner membrane;GO:0044444//cytoplasmic part	"GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0019900//kinase binding;GO:0046332//SMAD binding;GO:0005072//transforming growth factor beta receptor, cytoplasmic mediator activity"	GO:0045767//regulation of anti-apoptosis;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0035295//tube development;GO:0007420//brain development;GO:0006952//defense response;GO:0007243//intracellular protein kinase cascade;GO:0014070//response to organic cyclic compound;GO:0048333//mesodermal cell differentiation;GO:0006464//protein modification process;GO:0031346//positive regulation of cell projection organization;GO:0045597//positive regulation of cell differentiation;GO:0035196//production of miRNAs involved in gene silencing by miRNA;GO:0001649//osteoblast differentiation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0019953//sexual reproduction;GO:0008283//cell proliferation;GO:0065008;GO:0009611//response to wounding;GO:0009719	gi|301761722|ref|XP_002916289.1|/0/PREDICTED: mothers against decapentaplegic homolog 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58305140	3	0.86	2	0.57	12	3.61	"PREDICTED: Sus scrofa ATP-binding cassette, sub-family A (ABC1), member 5 (ABCA5), mRNA /cds=p(1,4935) /gb=XM_003131257 /gi=311266897 /ug=Ssc.40244 /len=5126"	GO:0031224//intrinsic to membrane;GO:0005764//lysosome;GO:0005770//late endosome;GO:0012505//endomembrane system	GO:0017111//nucleoside-triphosphatase activity;GO:0032559	GO:0030301//cholesterol transport;GO:0009207;GO:0010742//macrophage derived foam cell differentiation;GO:0034369//plasma lipoprotein particle remodeling	gi|311266898|ref|XP_003131305.1|/0/PREDICTED: ATP-binding cassette sub-family A member 5-like [Sus scrofa]
gnl|UG|Ssc#S58307911	7	2.02	4	1.14	4	1.2	"PREDICTED: Sus scrofa tyrosine-protein phosphatase non-receptor type 9-like (LOC100513481), mRNA /cds=p(329,2110) /gb=XM_003128481 /gi=311260763 /ug=Ssc.39620 /len=2859"	GO:0044424//intracellular part	GO:0004725//protein tyrosine phosphatase activity;GO:0005488//binding;GO:0004871//signal transducer activity	GO:0006470//protein dephosphorylation;GO:0023052//signaling	gi|300796653|ref|NP_001178983.1|/0/tyrosine-protein phosphatase non-receptor type 9 [Bos taurus]
gnl|UG|Ssc#S19539699	2	0.58	0	0	0	0	"943123 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN155795 /gi=46170225 /ug=Ssc.78682 /len=831"	-	-	-	-
gnl|UG|Ssc#S35168575	3	0.86	0	0	3	0.9	"Sus scrofa mRNA, clone:LVR010067H01, expressed in liver /gb=AK232548 /gi=115551115 /ug=Ssc.79014 /len=1745"	-	-	-	gi|77735375|ref|NP_001029384.1|/7.25591e-149/DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gnl|UG|Ssc#S46880928	17	4.89	3	0.86	17	5.11	"PREDICTED: Sus scrofa pumilio domain-containing protein KIAA0020-like (LOC100152831), mRNA /cds=p(30,1976) /gb=XM_001927669 /gi=311245823 /ug=Ssc.20481 /len=2145"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	-	gi|311245824|ref|XP_001927704.2|/0/PREDICTED: pumilio domain-containing protein KIAA0020-like [Sus scrofa]
gnl|UG|Ssc#S58308031	167	48.08	191	54.6	100	30.05	"PREDICTED: Sus scrofa serine/arginine-rich splicing factor 3-like (LOC100523801), mRNA /cds=p(117,611) /gb=XM_003128366 /gi=311260322 /ug=Ssc.38080 /len=2060"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	"gi|73972720|ref|XP_532124.2|/2.33611e-48/PREDICTED: similar to Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor SRP20) (X16 protein) [Canis familiaris]"
gnl|UG|Ssc#S35172719	5	1.44	2	0.57	5	1.5	"Sus scrofa mRNA, clone:ITT010006G08, expressed in intestine /gb=AK231171 /gi=115547116 /ug=Ssc.54899 /len=1158"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0006396//RNA processing	gi|194036247|ref|XP_001929692.1|/5.18338e-62/PREDICTED: sodium channel modifier 1 [Sus scrofa]
gnl|UG|Ssc#S46888458	1641	472.45	233	66.6	1042	313.15	"Sus scrofa GNAS complex locus (GNAS), transcript variant 4, mRNA /cds=p(387,1139) /gb=NM_001130215 /gi=194332511 /ug=Ssc.6675 /len=2619"	GO:0031252//cell leading edge;GO:0005626//insoluble fraction;GO:0000139//Golgi membrane;GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0031234//extrinsic to internal side of plasma membrane	GO:0060089;GO:0031628//opioid receptor binding;GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0032403//protein complex binding;GO:0035254//glutamate receptor binding;GO:0030695//GTPase regulator activity;GO:0009975//cyclase activity	GO:0030326//embryonic limb morphogenesis;GO:0048704//embryonic skeletal system morphogenesis;GO:0001775//cell activation;GO:0033762//response to glucagon stimulus;GO:0048871//multicellular organismal homeostasis;GO:0042044//fluid transport;GO:0015980//energy derivation by oxidation of organic compounds;GO:0015031//protein transport;GO:0009207;GO:0007189//activation of adenylate cyclase activity by G-protein signaling pathway;GO:0001503//ossification;GO:0009886//post-embryonic morphogenesis;GO:0030073//insulin secretion;GO:0008544//epidermis development;GO:0022414//reproductive process;GO:0006305;GO:0040007//growth;GO:0007606//sensory perception of chemical stimulus;GO:0007599//hemostasis;GO:0002763//positive regulation of myeloid leukocyte differentiation	gi|195539868|gb|AAI68156.1|/0/Unknown (protein for IMAGE:8363501) [Rattus norvegicus]
gnl|UG|Ssc#S46877806	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa tubulin, gamma complex associated protein 3, transcript variant 1 (TUBGCP3), mRNA /cds=p(1,2733) /gb=XM_001928111 /gi=194040660 /ug=Ssc.726 /len=3603"	GO:0005813//centrosome;GO:0000922//spindle pole	GO:0015631//tubulin binding;GO:0005198//structural molecule activity	GO:0000226//microtubule cytoskeleton organization;GO:0009566//fertilization;GO:0022402//cell cycle process	gi|194040661|ref|XP_001928146.1|/0/PREDICTED: gamma-tubulin complex component 3 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58313348	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa uncharacterized protein C19orf29-like (LOC100521180), mRNA /cds=p(29,2296) /gb=XM_003123052 /gi=311248357 /ug=Ssc.19584 /len=3366"	GO:0005681//spliceosomal complex	GO:0005488//binding	GO:0000377	gi|311248358|ref|XP_003123100.1|/0/PREDICTED: uncharacterized protein C19orf29-like [Sus scrofa]
gnl|UG|Ssc#S46876704	4	1.15	3	0.86	8	2.4	"PREDICTED: Sus scrofa SH2B adaptor protein 3 (SH2B3), mRNA /cds=p(339,2078) /gb=XM_001929523 /gi=311270634 /ug=Ssc.38298 /len=2709"	GO:0044444//cytoplasmic part	GO:0043168	GO:0030097//hemopoiesis;GO:0007599//hemostasis;GO:0007165//signal transduction;GO:0048869	gi|194042955|ref|XP_001929558.1|/0/PREDICTED: SH2B adapter protein 3 [Sus scrofa]
gnl|UG|Ssc#S58305894	24	6.91	12	3.43	26	7.81	"PREDICTED: Sus scrofa glutamyl-prolyl-tRNA synthetase (EPRS), mRNA /cds=p(113,4411) /gb=XM_003130517 /gi=311265227 /ug=Ssc.21447 /len=4620"	GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0003676//nucleic acid binding;GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation;GO:0065003	gi|311265228|ref|XP_003130565.1|/0/PREDICTED: LOW QUALITY PROTEIN: bifunctional aminoacyl-tRNA synthetase [Sus scrofa]
gnl|UG|Ssc#S46877568	233	67.08	413	118.06	141	42.37	"PREDICTED: Sus scrofa structural maintenance of chromosomes 4 (SMC4), mRNA /cds=p(46,3912) /gb=XM_001927505 /gi=311269599 /ug=Ssc.7850 /len=4604"	GO:0000793//condensed chromosome;GO:0031981//nuclear lumen	GO:0046983//protein dimerization activity;GO:0032559	GO:0000070//mitotic sister chromatid segregation	gi|194041163|ref|XP_001927540.1|/0/PREDICTED: structural maintenance of chromosomes protein 4 [Sus scrofa]
gnl|UG|Ssc#S55325687	2	0.58	2	0.57	0	0	"Sus scrofa mRNA, clone:PBL010080E12, expressed in peripheral blood mononuclear cells /gb=AK348964 /gi=288779139 /ug=Ssc.40393 /len=1709"	-	-	-	gi|296482642|gb|DAA24757.1|/0/DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Bos taurus]
gnl|UG|Ssc#S40026127	4	1.15	0	0	2	0.6	"reje13b_d20.y1 eje Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW121035 /gi=182515397 /ug=Ssc.70276 /len=542"	GO:0000228//nuclear chromosome;GO:0000785//chromatin;GO:0005635//nuclear envelope	GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0005515//protein binding;GO:0031490//chromatin DNA binding	GO:0000084//S phase of mitotic cell cycle;GO:0007051//spindle organization;GO:0007067//mitosis	gi|301755120|ref|XP_002913415.1|/6.35246e-27/PREDICTED: LOW QUALITY PROTEIN: regulator of chromosome condensation-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S18356252	0	0	0	0	2	0.6	"907268 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK451713 /gi=40798927 /ug=Ssc.57578 /len=852"	"GO:0032991//macromolecular complex;GO:0042175//nuclear membrane-endoplasmic reticulum network;GO:0016604//nuclear body;GO:0000775//chromosome, centromeric region;GO:0044444//cytoplasmic part"	GO:0003676//nucleic acid binding;GO:0022892	GO:0016070//RNA metabolic process;GO:0050658//RNA transport;GO:0051704;GO:0022415;GO:0007067//mitosis;GO:0015031//protein transport	gi|301620380|ref|XP_002939551.1|/7.06377e-163/PREDICTED: exportin-1 [Xenopus (Silurana) tropicalis]
gnl|UG|Ssc#S46880277	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa zinc finger protein ZFAT-like (LOC100152850), mRNA /cds=p(1,4227) /gb=XM_001927674 /gi=311253342 /ug=Ssc.28613 /len=4897"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|311253343|ref|XP_001927709.2|/0/PREDICTED: zinc finger protein ZFAT-like [Sus scrofa]
gnl|UG|Ssc#S21579686	2	0.58	0	0	6	1.8	"UMC-pd6end2-005-c11 Endometrium gilt D6 of estrous cycle pd6end Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO992646 /gi=51351920 /ug=Ssc.39839 /len=391"	-	-	-	-
gnl|UG|Ssc#S58308899	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa segment polarity protein dishevelled homolog DVL-1-like (LOC100525170), partial mRNA /cds=p(1,2034) /gb=XM_003127500 /gi=311258302 /ug=Ssc.1435 /len=2900"	GO:0030427//site of polarized growth;GO:0043005//neuron projection;GO:0030135//coated vesicle;GO:0005624//membrane fraction;GO:0015630//microtubule cytoskeleton;GO:0044297//cell body	GO:0019900//kinase binding;GO:0017048//Rho GTPase binding;GO:0001664//G-protein-coupled receptor binding	"GO:0007172//signal complex assembly;GO:0030177//positive regulation of Wnt receptor signaling pathway;GO:0001941//postsynaptic membrane organization;GO:0001932//regulation of protein phosphorylation;GO:0033673//negative regulation of kinase activity;GO:0014022;GO:0032102;GO:0043062//extracellular structure organization;GO:0033365//protein localization to organelle;GO:0001505//regulation of neurotransmitter levels;GO:0006935//chemotaxis;GO:0010975//regulation of neuron projection development;GO:0048741//skeletal muscle fiber development;GO:0000226//microtubule cytoskeleton organization;GO:0051705;GO:0048812//neuron projection morphogenesis;GO:0043393//regulation of protein binding;GO:0060026//convergent extension;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0042472//inner ear morphogenesis;GO:0060071//Wnt receptor signaling pathway, planar cell polarity pathway;GO:0048588//developmental cell growth;GO:0006355//regulation of transcription, DNA-dependent"	"gi|311258303|ref|XP_003127548.1|/0/PREDICTED: LOW QUALITY PROTEIN: segment polarity protein dishevelled homolog DVL-1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S28968976	11	3.17	4	1.14	6	1.8	"Sus scrofa CHES1 mRNA for checkpoint suppressor 1, complete cds /cds=p(87,1544) /gb=AB240453 /gi=81157938 /ug=Ssc.26309 /len=2843"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0016564//transcription repressor activity;GO:0043565//sequence-specific DNA binding;GO:0005515//protein binding;GO:0003702//RNA polymerase II transcription factor activity;GO:0043566//structure-specific DNA binding	GO:0048856//anatomical structure development;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0051319;GO:0007275//multicellular organismal development;GO:0006974//response to DNA damage stimulus	gi|113205602|ref|NP_001038001.1|/0/forkhead box protein N3 [Sus scrofa]
gnl|UG|Ssc#S35172247	0	0	9	2.57	2	0.6	"Sus scrofa mRNA, clone:ITT010023D05, expressed in intestine /gb=AK231246 /gi=115547588 /ug=Ssc.26428 /len=1588"	GO:0044444//cytoplasmic part	"GO:0046914//transition metal ion binding;GO:0016655//oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;GO:0000166//nucleotide binding"	GO:0051186//cofactor metabolic process	gi|148747251|ref|NP_001092066.1|/0/quinone oxidoreductase-like protein 1 [Sus scrofa]
gnl|UG|Ssc#S35164313	511	147.12	1195	341.59	504	151.47	"Sus scrofa mRNA, clone:MLN010099B08, expressed in mesenteric lymph node /gb=AK234026 /gi=115555413 /ug=Ssc.51924 /len=1043"	GO:0005746//mitochondrial respiratory chain	GO:0051536//iron-sulfur cluster binding;GO:0046914//transition metal ion binding;GO:0050136//NADH dehydrogenase (quinone) activity;GO:0048037//cofactor binding	GO:0010257;GO:0022904//respiratory electron transport chain;GO:0051234//establishment of localization	gi|194212381|ref|XP_001503839.2|/2.65334e-74/PREDICTED: similar to PSST subunit of the NADH: ubiquinone oxidoreductase complex [Equus caballus]
gnl|UG|Ssc#S46879655	2	0.58	2	0.57	12	3.61	"PREDICTED: Sus scrofa protein FAM78B-like (LOC100153010), mRNA /cds=p(1,786) /gb=XM_001925709 /gi=311253911 /ug=Ssc.95764 /len=943"	-	-	-	gi|74746881|sp|Q5VT40.1|FA78B_HUMAN/1.13057e-151/RecName: Full=Protein FAM78B
gnl|UG|Ssc#S46879814	3	0.86	0	0	7	2.1	"PREDICTED: Sus scrofa DNA damage-regulated autophagy modulator protein 2-like (LOC100158051), mRNA /cds=p(111,911) /gb=XM_001929149 /gi=311254610 /ug=Ssc.36467 /len=2652"	GO:0005764//lysosome;GO:0031224//intrinsic to membrane	-	GO:0012502//induction of programmed cell death	gi|194036494|ref|XP_001929184.1|/1.28305e-142/PREDICTED: DNA damage-regulated autophagy modulator protein 2-like [Sus scrofa]
gnl|UG|Ssc#S18333482	11	3.17	7	2	3	0.9	"BP460548 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRM10210G02 5', mRNA sequence /clone=OVRM10210G02 /clone_end=5' /gb=BP460548 /gi=40476742 /ug=Ssc.26107 /len=750"	-	-	GO:0012501//programmed cell death	gi|301782935|ref|XP_002926883.1|/1.14773e-139/PREDICTED: hypothetical protein LOC100477423 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58311850	46	13.24	22	6.29	40	12.02	"PREDICTED: Sus scrofa cytochrome b-c1 complex subunit 2, mitochondrial-like (LOC100523361), mRNA /cds=p(43,687) /gb=XM_003124549 /gi=311251409 /ug=Ssc.54018 /len=1504"	GO:0005746//mitochondrial respiratory chain	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0051234//establishment of localization;GO:0019538//protein metabolic process;GO:0045333//cellular respiration;GO:0022900//electron transport chain	"gi|27807143|ref|NP_777055.1|/1.26137e-114/cytochrome b-c1 complex subunit 2, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S58305877	5	1.44	3	0.86	10	3.01	"PREDICTED: Sus scrofa axin interactor, dorsalization-associated protein-like (LOC100518326), mRNA /cds=p(184,1104) /gb=XM_003130513 /gi=311265262 /ug=Ssc.11360 /len=2822"	GO:0044424//intracellular part	GO:0005515//protein binding	GO:0016055//Wnt receptor signaling pathway;GO:0043393//regulation of protein binding;GO:0043407//negative regulation of MAP kinase activity;GO:0043409//negative regulation of MAPKKK cascade;GO:0048263//determination of dorsal identity	"gi|311265263|ref|XP_003130561.1|/3.60782e-151/PREDICTED: axin interactor, dorsalization-associated protein-like [Sus scrofa]"
gnl|UG|Ssc#S40013475	2	0.58	3	0.86	0	0	"reep18c_c10.y1 eep Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW108384 /gi=182558107 /ug=Ssc.91121 /len=487"	-	-	-	-
gnl|UG|Ssc#S58303288	8	2.3	6	1.72	4	1.2	"PREDICTED: Sus scrofa rho GTPase-activating protein 22-like (LOC100156289), mRNA /cds=p(1,2106) /gb=XM_003133122 /gi=311271496 /ug=Ssc.29471 /len=2401"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity	GO:0035556//intracellular signal transduction;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0032501//multicellular organismal process;GO:0009966//regulation of signal transduction;GO:0048869	gi|311271497|ref|XP_003133170.1|/0/PREDICTED: LOW QUALITY PROTEIN: rho GTPase-activating protein 22-like [Sus scrofa]
gnl|UG|Ssc#S20935674	15	4.32	3	0.86	9	2.7	"AJ647397 CSEQRAN19 Sus scrofa cDNA clone C0003105_J01, mRNA sequence /clone=C0003105_J01 /gb=AJ647397 /gi=49324242 /ug=Ssc.85509 /len=435"	GO:0005768//endosome;GO:0042995//cell projection;GO:0000267//cell fraction;GO:0044431//Golgi apparatus part;GO:0016020//membrane	GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0009411//response to UV;GO:0022037//metencephalon development;GO:0017156//calcium ion-dependent exocytosis;GO:0030154//cell differentiation;GO:0010033//response to organic substance	"gi|149024854|gb|EDL81351.1|/9.63635e-47/stromal cell derived factor 4, isoform CRA_c [Rattus norvegicus]"
gnl|UG|Ssc#S58303408	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa DNA topoisomerase 3-beta-1-like (LOC100523403), mRNA /cds=p(278,2857) /gb=XM_003132987 /gi=311271024 /ug=Ssc.49377 /len=2928"	GO:0043231//intracellular membrane-bounded organelle;GO:0005694//chromosome	GO:0003916//DNA topoisomerase activity;GO:0032559	GO:0006261//DNA-dependent DNA replication	gi|311271025|ref|XP_003133035.1|/0/PREDICTED: DNA topoisomerase 3-beta-1-like [Sus scrofa]
gnl|UG|Ssc#S40181317	34	9.79	15	4.29	22	6.61	"rjca29c_f12.y1 jca Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW276224 /gi=182446415 /ug=Ssc.68348 /len=598"	-	-	-	gi|300872546|gb|ADK39026.1|/7.11643e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S55326847	50	14.4	39	11.15	77	23.14	"Sus scrofa mRNA, clone:OVR010101E01, expressed in ovary /gb=AK347804 /gi=288777979 /ug=Ssc.83145 /len=1776"	GO:0030427//site of polarized growth;GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0044425//membrane part;GO:0000267//cell fraction;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0044297//cell body	GO:0004672//protein kinase activity;GO:0051018//protein kinase A binding;GO:0008134//transcription factor binding;GO:0019900//kinase binding;GO:0032559;GO:0008092//cytoskeletal protein binding;GO:0035254//glutamate receptor binding	"GO:0006461//protein complex assembly;GO:0001952//regulation of cell-matrix adhesion;GO:0032321//positive regulation of Rho GTPase activity;GO:0043405//regulation of MAP kinase activity;GO:0048017//inositol lipid-mediated signaling;GO:0048167//regulation of synaptic plasticity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0048870//cell motility;GO:0021987//cerebral cortex development;GO:0022402//cell cycle process;GO:0033365//protein localization to organelle;GO:0007163//establishment or maintenance of cell polarity;GO:0001934//positive regulation of protein phosphorylation;GO:0012502//induction of programmed cell death;GO:0006935//chemotaxis;GO:0009896;GO:0006605//protein targeting;GO:0006984//ER-nucleus signaling pathway;GO:0043066//negative regulation of apoptosis;GO:0006073//cellular glucan metabolic process;GO:0000768//syncytium formation by plasma membrane fusion;GO:0043393//regulation of protein binding;GO:0060070//canonical Wnt receptor signaling pathway;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0010038//response to metal ion;GO:0051146//striated muscle cell differentiation;GO:0031345//negative regulation of cell projection organization;GO:0046824//positive regulation of nucleocytoplasmic transport;GO:0006355//regulation of transcription, DNA-dependent"	gi|193211385|ref|NP_001123212.1|/0/glycogen synthase kinase-3 beta [Ovis aries]
gnl|UG|Ssc#S46878519	0	0	0	0	0	0	"PREDICTED: Sus scrofa solute carrier family 12 (potassium/chloride transporters), member 6 (SLC12A6), mRNA /cds=p(1,3252) /gb=XM_001925552 /gi=194039185 /ug=Ssc.41190 /len=3881"	GO:0044459//plasma membrane part;GO:0043005//neuron projection;GO:0031224//intrinsic to membrane	GO:0015377//cation:chloride symporter activity;GO:0005488//binding	GO:0015698//inorganic anion transport;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0030001//metal ion transport	gi|194039186|ref|XP_001925587.1|/0/PREDICTED: solute carrier family 12 member 6 [Sus scrofa]
gnl|UG|Ssc#S58302534	3	0.86	0	0	7	2.1	"PREDICTED: Sus scrofa cadherin-6-like (LOC100524590), mRNA /cds=p(132,2504) /gb=XM_003133862 /gi=311273528 /ug=Ssc.5028 /len=2548"	GO:0016021//integral to membrane;GO:0031981//nuclear lumen	GO:0046872//metal ion binding	GO:0045216//cell-cell junction organization;GO:0016337//cell-cell adhesion;GO:0008406//gonad development	gi|311273529|ref|XP_003133910.1|/0/PREDICTED: cadherin-6-like [Sus scrofa]
gnl|UG|Ssc#S26725400	0	0	2	0.57	0	0	"AJ961484 KN404_2 Sus scrofa cDNA clone C0007750b21 3', mRNA sequence /clone=C0007750b21 /clone_end=3' /gb=AJ961484 /gi=74378300 /ug=Ssc.28196 /len=844"	GO:0005768//endosome;GO:0043232	GO:0030695//GTPase regulator activity;GO:0004672//protein kinase activity;GO:0032559	GO:0048731;GO:0000186//activation of MAPKK activity;GO:0010769//regulation of cell morphogenesis involved in differentiation;GO:0030036//actin cytoskeleton organization	gi|301770947|ref|XP_002920892.1|/8.2724e-47/PREDICTED: TRAF2 and NCK-interacting protein kinase-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58307179	65	18.71	15	4.29	96	28.85	"PREDICTED: Sus scrofa annexin A5-like (LOC100521982), partial mRNA /cds=p(1,1159) /gb=XM_003129218 /gi=311262608 /ug=Ssc.53948 /len=1626"	GO:0044291;GO:0044424//intracellular part	GO:0046872//metal ion binding;GO:0005543//phospholipid binding;GO:0005102//receptor binding;GO:0043498//cell surface binding;GO:0055102//lipase inhibitor activity	GO:0050817;GO:0051259//protein oligomerization;GO:0023052//signaling;GO:0042221//response to chemical stimulus;GO:0007599//hemostasis;GO:0043066//negative regulation of apoptosis	"gi|311262609|ref|XP_003129266.1|/0/PREDICTED: annexin A5-like, partial [Sus scrofa]"
gnl|UG|Ssc#S46877765	8	2.3	16	4.57	10	3.01	"PREDICTED: Sus scrofa RNA binding motif protein 26, transcript variant 2 (RBM26), mRNA /cds=p(54,3083) /gb=XM_001926017 /gi=311266422 /ug=Ssc.8563 /len=3784"	-	GO:0046872//metal ion binding	-	gi|311266423|ref|XP_001926052.2|/0/PREDICTED: RNA-binding protein 26 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S20936462	59	16.99	89	25.44	33	9.92	"AJ648185 CSEQRAN19 Sus scrofa cDNA clone C0003263_O08, mRNA sequence /clone=C0003263_O08 /gb=AJ648185 /gi=49325030 /ug=Ssc.85498 /len=419"	GO:0045240;GO:0044429//mitochondrial part	GO:0004673//protein histidine kinase activity;GO:0032559	GO:0006468//protein phosphorylation;GO:0007165//signal transduction;GO:0009063//cellular amino acid catabolic process	"gi|158517950|ref|NP_062117.2|/2.03493e-60/[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial precursor [Rattus norvegicus]"
gnl|UG|Ssc#S46877015	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa KIF1-binding protein-like (LOC100151916), mRNA /cds=p(1,2097) /gb=XM_001928810 /gi=311271297 /ug=Ssc.21518 /len=2651"	GO:0043231//intracellular membrane-bounded organelle	GO:0008092//cytoskeletal protein binding	GO:0048731;GO:0046907//intracellular transport;GO:0048869	gi|311271298|ref|XP_001928845.2|/0/PREDICTED: KIF1-binding protein-like [Sus scrofa]
gnl|UG|Ssc#S58308643	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa tubulointerstitial nephritis antigen-like (LOC100517950), mRNA /cds=p(16,1476) /gb=XM_003127752 /gi=311258829 /ug=Ssc.13849 /len=1820"	GO:0044421//extracellular region part;GO:0044424//intracellular part	GO:0004175//endopeptidase activity;GO:0001871;GO:0005515//protein binding;GO:0005198//structural molecule activity;GO:0004888//transmembrane receptor activity	GO:0019538//protein metabolic process;GO:0002376//immune system process;GO:0016192//vesicle-mediated transport;GO:0023052//signaling	gi|311258830|ref|XP_003127800.1|/0/PREDICTED: tubulointerstitial nephritis antigen-like [Sus scrofa]
gnl|UG|Ssc#S58312686	105	30.23	61	17.44	57	17.13	"PREDICTED: Sus scrofa proteinase-activated receptor 3-like (LOC100519355), mRNA /cds=p(214,1350) /gb=XM_003123711 /gi=311249699 /ug=Ssc.15480 /len=2824"	-	-	-	-
gnl|UG|Ssc#S46878264	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa snurportin 1, transcript variant 1 (SNUPN), mRNA /cds=p(78,1166) /gb=XM_001929236 /gi=311260760 /ug=Ssc.1226 /len=1705"	GO:0044444//cytoplasmic part;GO:0005635//nuclear envelope;GO:0034518	GO:0003723//RNA binding;GO:0022892	"GO:0006605//protein targeting;GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|194039710|ref|XP_001929271.1|/0/PREDICTED: snurportin-1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58302997	5	1.44	2	0.57	5	1.5	"PREDICTED: Sus scrofa heparan-sulfate 6-O-sulfotransferase 1-like (LOC100156717), mRNA /cds=p(1,1236) /gb=XM_003133399 /gi=311272439 /ug=Ssc.93990 /len=1480"	GO:0016021//integral to membrane	"GO:0016782//transferase activity, transferring sulfur-containing groups"	GO:0005975//carbohydrate metabolic process;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0015012//heparan sulfate proteoglycan biosynthetic process;GO:0048568//embryonic organ development	gi|311272440|ref|XP_003133447.1|/0/PREDICTED: LOW QUALITY PROTEIN: heparan-sulfate 6-O-sulfotransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S35171575	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:ITT010076E09, expressed in intestine /gb=AK231474 /gi=115548260 /ug=Ssc.33310 /len=1163"	-	GO:0043169//cation binding	-	"gi|148687346|gb|EDL19293.1|/1.94266e-69/zinc finger, HIT domain containing 1, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S58307299	3	0.86	5	1.43	10	3.01	"PREDICTED: Sus scrofa general vesicular transport factor p115-like (LOC100511575), mRNA /cds=p(1,2760) /gb=XM_003129115 /gi=311262363 /ug=Ssc.28102 /len=3714"	GO:0012505//endomembrane system;GO:0042598//vesicular fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0022892	GO:0006906//vesicle fusion;GO:0015031//protein transport	gi|311262364|ref|XP_003129163.1|/0/PREDICTED: general vesicular transport factor p115-like [Sus scrofa]
gnl|UG|Ssc#S58303479	3	0.86	5	1.43	2	0.6	"PREDICTED: Sus scrofa paxillin-like (LOC100521405), mRNA /cds=p(1,3159) /gb=XM_003132928 /gi=311270739 /ug=Ssc.4085 /len=5020"	GO:0015630//microtubule cytoskeleton;GO:0031252//cell leading edge;GO:0005924//cell-substrate adherens junction	GO:0046914//transition metal ion binding;GO:0005102//receptor binding;GO:0051400//BH domain binding;GO:0008092//cytoskeletal protein binding;GO:0019900//kinase binding	GO:0003012//muscle system process;GO:0001763//morphogenesis of a branching structure;GO:0000302//response to reactive oxygen species;GO:0007044//cell-substrate junction assembly;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006996//organelle organization;GO:0006468//protein phosphorylation;GO:0030031//cell projection assembly;GO:0031589//cell-substrate adhesion;GO:0000165//MAPKKK cascade	gi|311270740|ref|XP_003132976.1|/0/PREDICTED: paxillin-like [Sus scrofa]
gnl|UG|Ssc#S19550565	0	0	0	0	2	0.6	"998353 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN166673 /gi=46181103 /ug=Ssc.2262 /len=747"	GO:0031224//intrinsic to membrane	-	-	gi|301771199|ref|XP_002921025.1|/7.77011e-48/PREDICTED: UPF0139 membrane protein C19orf56 homolog [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46878958	0	0	0	0	0	0	"PREDICTED: Sus scrofa cleavage and polyadenylation specificity factor subunit 2-like (LOC100156078), mRNA /cds=p(84,902) /gb=XM_001926890 /gi=311261462 /ug=Ssc.7561 /len=1914"	GO:0005849//mRNA cleavage factor complex	GO:0003676//nucleic acid binding;GO:0003824//catalytic activity	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0008334//histone mRNA metabolic process;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	gi|297298472|ref|XP_002805234.1|/3.88499e-159/PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Macaca mulatta]
gnl|UG|Ssc#S18383312	74	21.3	107	30.59	69	20.74	"934326 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK463421 /gi=40834702 /ug=Ssc.82999 /len=816"	-	-	-	-
gnl|UG|Ssc#S58308992	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa protein kinase C gamma type-like (LOC100517345), mRNA /cds=p(1,345) /gb=XM_003127395 /gi=311258115 /ug=Ssc.91046 /len=1046"	GO:0043231//intracellular membrane-bounded organelle;GO:0043005//neuron projection;GO:0005624//membrane fraction;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0004674//protein serine/threonine kinase activity;GO:0046914//transition metal ion binding;GO:0032559	GO:0007267//cell-cell signaling;GO:0006796//phosphate metabolic process;GO:0006298//mismatch repair;GO:0016567//protein ubiquitination;GO:0009895;GO:0007165//signal transduction;GO:0007610//behavior	gi|311258116|ref|XP_003127443.1|/2.32246e-63/PREDICTED: protein kinase C gamma type-like [Sus scrofa]
gnl|UG|Ssc#S40179204	0	0	0	0	2	0.6	"rjca17c_k8.y1 jca Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW274111 /gi=182479000 /ug=Ssc.68333 /len=549"	-	-	-	-
gnl|UG|Ssc#S19542900	15	4.32	4	1.14	7	2.1	"948014 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158996 /gi=46173426 /ug=Ssc.27536 /len=866"	GO:0031981//nuclear lumen;GO:0005624//membrane fraction;GO:0031252//cell leading edge;GO:0005924//cell-substrate adherens junction;GO:0005578//proteinaceous extracellular matrix;GO:0043234//protein complex;GO:0042995//cell projection	GO:0005198//structural molecule activity;GO:0043236//laminin binding;GO:0042805//actinin binding	GO:0000226//microtubule cytoskeleton organization;GO:0010741;GO:0002009//morphogenesis of an epithelium;GO:0016477//cell migration	gi|149728653|ref|XP_001497663.1|/9.00124e-105/PREDICTED: dystroglycan 1 (dystrophin-associated glycoprotein 1) [Equus caballus]
gnl|UG|Ssc#S55327401	0	0	5	1.43	0	0	"Sus scrofa mRNA, clone:MLTL10084C04, expressed in longissimus /gb=AK347248 /gi=288576653 /ug=Ssc.18334 /len=718"	GO:0072379	GO:0016881//acid-amino acid ligase activity	GO:0043412;GO:0045048//protein insertion into ER membrane	gi|77735379|ref|NP_001029386.1|/5.01173e-73/ubiquitin-like 4A [Bos taurus]
gnl|UG|Ssc#S55323381	41	11.8	21	6	63	18.93	"Sus scrofa mRNA, clone:BKFL10040D01, expressed in back fat /gb=AK344100 /gi=288781491 /ug=Ssc.72501 /len=1009"	GO:0043231//intracellular membrane-bounded organelle	GO:0004520//endodeoxyribonuclease activity	-	gi|109939959|gb|AAI18355.1|/1.21239e-163/TatD DNase domain containing 1 [Bos taurus] 
gnl|UG|Ssc#S18387994	3	0.86	0	0	2	0.6	"939474 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK468107 /gi=40839384 /ug=Ssc.1866 /len=835"	GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton;GO:0031252//cell leading edge;GO:0005924//cell-substrate adherens junction;GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0046914//transition metal ion binding;GO:0003779//actin binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006461//protein complex assembly;GO:0035194//posttranscriptional gene silencing by RNA;GO:0016337//cell-cell adhesion;GO:0006650//glycerophospholipid metabolic process;GO:0007044//cell-substrate junction assembly;GO:0033124//regulation of GTP catabolic process;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0044319;GO:0008104//protein localization;GO:0030031//cell projection assembly;GO:0043405//regulation of MAP kinase activity;GO:0009891	gi|297694717|ref|XP_002824617.1|/1.0378e-94/PREDICTED: protein ajuba-like [Pongo abelii]
gnl|UG|Ssc#S58306897	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa ubiquilin 3 (UBQLN3), mRNA /cds=p(113,2071) /gb=XM_003129455 /gi=311263185 /ug=Ssc.47171 /len=2327"	-	-	-	gi|311263186|ref|XP_003129503.1|/0/PREDICTED: ubiquilin-3-like [Sus scrofa]
gnl|UG|Ssc#S55290990	0	0	0	0	0	0	"FS646806 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10086D09 5', mRNA sequence /clone=BFLT10086D09 /clone_end=5' /gb=FS646806 /gi=288290515 /ug=Ssc.95596 /len=807"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	"gi|73979227|ref|XP_849411.1|/2.83211e-126/PREDICTED: similar to zinc finger, matrin type 4 [Canis familiaris]"
gnl|UG|Ssc#S39891360	119	34.26	64	18.29	204	61.31	"rcmu37_d9.y1 cmu Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV986435 /gi=178643624 /ug=Ssc.71217 /len=547"	-	-	-	-
gnl|UG|Ssc#S55269548	13	3.74	30	8.58	55	16.53	"FS713003 full-length enriched swine cDNA library, adult pituitary gland Sus scrofa cDNA clone PTG010106D01 5', mRNA sequence /clone=PTG010106D01 /clone_end=5' /gb=FS713003 /gi=288263110 /ug=Ssc.93110 /len=656"	-	-	-	gi|311265313|ref|XP_003130592.1|/2.0825e-32/PREDICTED: serine/threonine-protein kinase MRCK alpha-like [Sus scrofa]
gnl|UG|Ssc#S58302248	0	0	7	2	0	0	"PREDICTED: Sus scrofa adenylate cyclase type 2-like (LOC100517131), mRNA /cds=p(1,1014) /gb=XM_003134151 /gi=311274115 /ug=Ssc.46777 /len=1907"	GO:0032991//macromolecular complex;GO:0043005//neuron projection;GO:0005626//insoluble fraction;GO:0044424//intracellular part;GO:0031224//intrinsic to membrane	GO:0000166//nucleotide binding;GO:0004016//adenylate cyclase activity;GO:0032403//protein complex binding	"GO:0015980//energy derivation by oxidation of organic compounds;GO:0007267//cell-cell signaling;GO:0045762//positive regulation of adenylate cyclase activity;GO:0033762//response to glucagon stimulus;GO:0032147//activation of protein kinase activity;GO:0010863//positive regulation of phospholipase C activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007188//G-protein signaling, coupled to cAMP nucleotide second messenger;GO:0042044//fluid transport"	gi|311274116|ref|XP_003134199.1|/9.50879e-166/PREDICTED: adenylate cyclase type 2-like [Sus scrofa]
gnl|UG|Ssc#S55322228	2	0.58	0	0	5	1.5	"Sus scrofa mRNA, clone:DCI010095F12, expressed in dendritic cells (immature) /gb=AK344655 /gi=288782644 /ug=Ssc.36958 /len=1516"	-	-	GO:0002526//acute inflammatory response	gi|311248131|ref|XP_003122988.1|/0/PREDICTED: protein SAAL1-like [Sus scrofa]
gnl|UG|Ssc#S35172635	53	15.26	72	20.58	11	3.31	"Sus scrofa mRNA, clone:OVR010089B11, expressed in ovary /gb=AK234573 /gi=115547200 /ug=Ssc.4899 /len=2258"	GO:0044424//intracellular part	GO:0005515//protein binding	GO:0002042//cell migration involved in sprouting angiogenesis;GO:0007155//cell adhesion;GO:0016310//phosphorylation	gi|194045047|ref|XP_001924554.1|/0/PREDICTED: sushi repeat-containing protein SRPX2 [Sus scrofa]
gnl|UG|Ssc#S58312649	3	0.86	6	1.72	5	1.5	"PREDICTED: Sus scrofa zinc finger, FYVE domain containing 16 (ZFYVE16), mRNA /cds=p(189,4682) /gb=XM_003123749 /gi=311249776 /ug=Ssc.10598 /len=6317"	GO:0005769//early endosome	GO:0022892;GO:0046914//transition metal ion binding;GO:0035091//phosphatidylinositol binding	GO:0006623//protein targeting to vacuole;GO:0006897//endocytosis;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway	gi|311249777|ref|XP_003123797.1|/0/PREDICTED: zinc finger FYVE domain-containing protein 16-like [Sus scrofa]
gnl|UG|Ssc#S58309490	5	1.44	4	1.14	2	0.6	"PREDICTED: Sus scrofa nuclear factor of activated T-cells 5, tonicity-responsive (NFAT5), mRNA /cds=p(1,4656) /gb=XM_003126903 /gi=311257102 /ug=Ssc.39529 /len=5948"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0003008;GO:0006351//transcription, DNA-dependent;GO:0023052//signaling"	gi|311257103|ref|XP_003126951.1|/0/PREDICTED: nuclear factor of activated T-cells 5-like [Sus scrofa]
gnl|UG|Ssc#S20935877	51	14.68	192	54.88	82	24.64	"AJ647600 CSEQRAN19 Sus scrofa cDNA clone C0003260_C06, mRNA sequence /clone=C0003260_C06 /gb=AJ647600 /gi=49324445 /ug=Ssc.85514 /len=538"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|157824174|ref|NP_001099572.1|/3.17761e-55/HIG1 hypoxia inducible domain family, member 2A [Rattus norvegicus]"
gnl|UG|Ssc#S6011975	0	0	7	2	0	0	"352226 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BG834120 /gi=14199117 /ti=448056580 /ug=Ssc.77122 /len=574"	-	-	-	"gi|114644530|ref|XP_509094.2|/1.92417e-19/PREDICTED: retinoic acid receptor, gamma [Pan troglodytes]"
gnl|UG|Ssc#S58314579	12	3.45	27	7.72	5	1.5	"PREDICTED: Sus scrofa UPF0679 protein C14orf101-like (LOC100512450), mRNA /cds=p(86,2209) /gb=XM_003121823 /gi=311245558 /ug=Ssc.2296 /len=5542"	-	-	-	gi|311245559|ref|XP_003121871.1|/0/PREDICTED: UPF0679 protein C14orf101-like [Sus scrofa]
gnl|UG|Ssc#S58308004	6	1.73	0	0	6	1.8	"PREDICTED: Sus scrofa fibroblast growth factor receptor substrate 3 (FRS3), mRNA /cds=p(264,1751) /gb=XM_003128391 /gi=311260413 /ug=Ssc.88606 /len=1751"	GO:0016020//membrane	GO:0004871//signal transducer activity;GO:0070851//growth factor receptor binding	GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|311260414|ref|XP_003128439.1|/0/PREDICTED: fibroblast growth factor receptor substrate 3-like [Sus scrofa]
gnl|UG|Ssc#S46880203	176	50.67	310	88.61	148	44.48	"PREDICTED: Sus scrofa exostosin-like 2-like (LOC100155305), mRNA /cds=p(398,1390) /gb=XM_001925598 /gi=311254720 /ug=Ssc.49020 /len=2187"	GO:0005789//endoplasmic reticulum membrane;GO:0031224//intrinsic to membrane	GO:0043169//cation binding;GO:0008376//acetylgalactosaminyltransferase activity;GO:0008375//acetylglucosaminyltransferase activity	GO:0006041//glucosamine metabolic process	gi|194035686|ref|XP_001925633.1|/8.28141e-177/PREDICTED: exostosin-like 2-like [Sus scrofa]
gnl|UG|Ssc#S40107581	3	0.86	0	0	3	0.9	"rfhi4017b_e24.y1 fhi Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW202488 /gi=182600937 /ug=Ssc.91436 /len=462"	-	-	-	-
gnl|UG|Ssc#S45783728	2	0.58	0	0	0	0	"Sus scrofa elongase mRNA, partial cds /cds=p(4,870) /gb=EU747336 /gi=216854352 /ug=Ssc.32678 /len=870"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0004312//fatty acid synthase activity;GO:0005488//binding	"GO:0000038//very long-chain fatty acid metabolic process;GO:0035336//long-chain fatty-acyl-CoA metabolic process;GO:0006641//triglyceride metabolic process;GO:0019368//fatty acid elongation, unsaturated fatty acid"	gi|216854353|gb|ACE80202.2|/1.1657e-176/elongase [Sus scrofa]
gnl|UG|Ssc#S35170243	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:TCH010101D01, expressed in trachea /gb=AK238404 /gi=115549596 /ug=Ssc.57080 /len=1885"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0016758//transferase activity, transferring hexosyl groups"	GO:0006464//protein modification process	"gi|301791040|ref|XP_002930519.1|/7.91836e-173/PREDICTED: UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58314191	5	1.44	0	0	6	1.8	"PREDICTED: Sus scrofa protein zer-1 homolog (LOC100514508), mRNA /cds=p(1,723) /gb=XM_003122206 /gi=311246572 /ug=Ssc.56361 /len=2358"	GO:0031461//cullin-RING ubiquitin ligase complex	GO:0005488//binding;GO:0019787//small conjugating protein ligase activity	GO:0031396//regulation of protein ubiquitination	gi|311246573|ref|XP_003122254.1|/1.68057e-130/PREDICTED: protein zer-1 homolog [Sus scrofa]
gnl|UG|Ssc#S26653072	2	0.58	0	0	0	0	"Sus scrofa cGMP-dependent protein kinase type I (Prkg1) mRNA, complete cds /cds=p(231,2246) /gb=DQ119109 /gi=73425906 /ug=Ssc.87636 /len=2489"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0019002//GMP binding;GO:0004690//cyclic nucleotide-dependent protein kinase activity;GO:0032559	GO:0016477//cell migration;GO:0001775//cell activation;GO:0006796//phosphate metabolic process;GO:0007420//brain development;GO:0031175//neuron projection development;GO:0007010//cytoskeleton organization;GO:0023052//signaling;GO:0007599//hemostasis;GO:0006464//protein modification process	gi|113205750|ref|NP_001038039.1|/0/cGMP-dependent protein kinase 1 [Sus scrofa]
gnl|UG|Ssc#S46875818	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa carbonic anhydrase 5B, mitochondrial-like (LOC100156418), mRNA /cds=p(150,1103) /gb=XM_001926815 /gi=311275977 /ug=Ssc.84497 /len=1103"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0016836//hydro-lyase activity	GO:0044237//cellular metabolic process	"gi|194044795|ref|XP_001926850.1|/0/PREDICTED: carbonic anhydrase 5B, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35167645	12	3.45	4	1.14	10	3.01	"Sus scrofa mRNA, clone:THY010089B03, expressed in thymus /gb=AK239287 /gi=115552094 /ug=Ssc.29369 /len=2990"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	"GO:0000377;GO:0031124//mRNA 3'-end processing;GO:0006353//transcription termination, DNA-dependent"	gi|297259521|ref|XP_002798131.1|/9.68569e-86/PREDICTED: cleavage stimulation factor subunit 1 isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S58303637	4	1.15	4	1.14	10	3.01	"PREDICTED: Sus scrofa runt-related transcription factor 1-like (LOC100512439), mRNA /cds=p(1,873) /gb=XM_003132760 /gi=311270200 /ug=Ssc.58373 /len=873"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0042802//identical protein binding;GO:0032559	GO:0002762//negative regulation of myeloid leukocyte differentiation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0002763//positive regulation of myeloid leukocyte differentiation;GO:0045765//regulation of angiogenesis	gi|311270201|ref|XP_003132808.1|/5.8753e-144/PREDICTED: runt-related transcription factor 1-like [Sus scrofa]
gnl|UG|Ssc#S39989468	3	0.86	5	1.43	5	1.5	"recc2835c_p15.y1 ecc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW084533 /gi=181241909 /ug=Ssc.62446 /len=647"	GO:0043234//protein complex;GO:0034399//nuclear periphery;GO:0016020//membrane	GO:0003712//transcription cofactor activity;GO:0046914//transition metal ion binding;GO:0016564//transcription repressor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding	GO:0003002//regionalization;GO:0048592//eye morphogenesis;GO:0000122//negative regulation of transcription from RNA polymerase II promoter	gi|27545350|ref|NP_775412.1|/1.34602e-44/transcriptional repressor protein YY1 [Rattus norvegicus]
gnl|UG|Ssc#S35166409	0	0	2	0.57	2	0.6	"Sus scrofa mRNA, clone:LVRM10085H03, expressed in liver /gb=AK233127 /gi=115553329 /ug=Ssc.31893 /len=1776"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0019866//organelle inner membrane	GO:0022891//substrate-specific transmembrane transporter activity	GO:0051181//cofactor transport;GO:0003333//amino acid transmembrane transport;GO:0019217//regulation of fatty acid metabolic process	gi|311268873|ref|XP_003132243.1|/1.75735e-174/PREDICTED: mitochondrial carnitine/acylcarnitine carrier protein-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58304859	7	2.02	0	0	4	1.2	"PREDICTED: Sus scrofa CDK5 regulatory subunit-associated protein 3-like (LOC100521291), mRNA /cds=p(77,1213) /gb=XM_003131543 /gi=311267470 /ug=Ssc.18579 /len=1213"	-	GO:0019901//protein kinase binding	GO:0050767//regulation of neurogenesis;GO:0007417//central nervous system development;GO:0051726//regulation of cell cycle	gi|311267471|ref|XP_003131591.1|/0/PREDICTED: CDK5 regulatory subunit-associated protein 3-like [Sus scrofa]
gnl|UG|Ssc#S35166285	4	1.15	3	0.86	9	2.7	"Sus scrofa mRNA, clone:OVRM10212E03, expressed in ovary /gb=AK236656 /gi=115553453 /ug=Ssc.24998 /len=1260"	-	-	-	gi|297698337|ref|XP_002826281.1|/1.01435e-159/PREDICTED: LOW QUALITY PROTEIN: ubiquitin domain-containing protein UBFD1-like [Pongo abelii]
gnl|UG|Ssc#S55327935	9	2.59	2	0.57	5	1.5	"Sus scrofa phosphorylase kinase, gamma 2 (testis) (PHKG2), mRNA /cds=p(66,1280) /gb=NM_001166317 /gi=261490779 /ug=Ssc.2981 /len=1469"	-	-	-	-
gnl|UG|Ssc#S20935185	630	181.38	974	278.42	1652	496.47	"AJ646908 CSEQRAN19 Sus scrofa cDNA clone C0003104_A15, mRNA sequence /clone=C0003104_A15 /gb=AJ646908 /gi=49323753 /ug=Ssc.74019 /len=444"	GO:0015934//large ribosomal subunit	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|293345785|ref|XP_002726116.1|/6.30369e-78/PREDICTED: ribosomal protein L8-like [Rattus norvegicus]
gnl|UG|Ssc#S58305861	36	10.36	82	23.44	25	7.51	"PREDICTED: Sus scrofa WD repeat domain 26, transcript variant 1 (WDR26), mRNA /cds=p(1,1983) /gb=XM_003130536 /gi=311265294 /ug=Ssc.21945 /len=2862"	GO:0031981//nuclear lumen	-	-	gi|311265295|ref|XP_003130584.1|/0/PREDICTED: WD repeat-containing protein 26-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58303444	0	0	13	3.72	3	0.9	"PREDICTED: Sus scrofa adaptor-related protein complex 1, beta 1 subunit, transcript variant 3 (AP1B1), mRNA /cds=p(1,2853) /gb=XM_003132946 /gi=311270877 /ug=Ssc.38023 /len=3831"	GO:0005764//lysosome;GO:0030136//clathrin-coated vesicle;GO:0030119//AP-type membrane coat adaptor complex;GO:0012506//vesicle membrane	GO:0005488//binding;GO:0022892	GO:0048193//Golgi vesicle transport;GO:0050688//regulation of defense response to virus;GO:0015031//protein transport	gi|311270878|ref|XP_003132994.1|/0/PREDICTED: AP-1 complex subunit beta-1 isoform 3 [Sus scrofa]
gnl|UG|Ssc#S55321803	8	2.3	9	2.57	4	1.2	"Sus scrofa mRNA, clone:ITT010006F05, expressed in small intestine /gb=AK344882 /gi=288783069 /ug=Ssc.33210 /len=1809"	GO:0031224//intrinsic to membrane	GO:0004091//carboxylesterase activity	GO:0050953//sensory perception of light stimulus	gi|118151300|ref|NP_001071584.1|/1.56423e-103/monoacylglycerol lipase ABHD12 [Bos taurus]
gnl|UG|Ssc#S23212809	5	1.44	0	0	7	2.1	"Sus scrofa clone Clu_943.scr.msk.p1.Contig1, mRNA sequence /gb=AY610199 /gi=52351769 /ug=Ssc.3449 /len=1166"	GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0004871//signal transducer activity;GO:0042287//MHC protein binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051704;GO:0022415;GO:0006886//intracellular protein transport;GO:0006950//response to stress;GO:0006984//ER-nucleus signaling pathway	gi|301781480|ref|XP_002926155.1|/2.18528e-137/PREDICTED: derlin-1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58309620	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa traB domain-containing protein-like (LOC100519151), mRNA /cds=p(69,1202) /gb=XM_003126778 /gi=311256827 /ug=Ssc.27078 /len=1347"	-	-	-	gi|311256828|ref|XP_003126826.1|/0/PREDICTED: traB domain-containing protein-like [Sus scrofa]
gnl|UG|Ssc#S35174245	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:AMP010028E08, expressed in alveolar macrophage /gb=AK230705 /gi=115545590 /ug=Ssc.48444 /len=2726"	-	-	-	gi|29437076|gb|AAH49743.1|/1.44593e-56/Atxn3 protein [Mus musculus]
gnl|UG|Ssc#S35169464	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:THY010011D11, expressed in thymus /gb=AK238640 /gi=115550375 /ug=Ssc.43506 /len=3076"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0034062//RNA polymerase activity	GO:0051707//response to other organism;GO:0031349//positive regulation of defense response;GO:0032481//positive regulation of type I interferon production;GO:0010467//gene expression	"gi|149041228|gb|EDL95161.1|/3.25385e-28/polymerase (RNA) III (DNA directed) polypeptide F (predicted), isoform CRA_d [Rattus norvegicus]"
gnl|UG|Ssc#S58310267	6	1.73	0	0	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100154057 (LOC100154057), mRNA /cds=p(122,1162) /gb=XM_003126133 /gi=311255321 /ug=Ssc.82789 /len=1162"	-	GO:0003676//nucleic acid binding	-	gi|311255322|ref|XP_003126181.1|/9.72589e-154/PREDICTED: hypothetical protein LOC100154057 [Sus scrofa]
gnl|UG|Ssc#S31119772	2	0.58	0	0	0	0	"1542264 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY423610 /gi=87224913 /ug=Ssc.47817 /len=679"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|301769415|ref|XP_002920126.1|/8.62552e-85/PREDICTED: general transcription factor II-I repeat domain-containing protein 2-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58306148	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100516100 (LOC100516100), mRNA /cds=p(152,2956) /gb=XM_003130250 /gi=311264708 /ug=Ssc.38578 /len=2956"	GO:0000808//origin recognition complex;GO:0031981//nuclear lumen	GO:0043565//sequence-specific DNA binding;GO:0005515//protein binding;GO:0032559	GO:0007050//cell cycle arrest;GO:0006259//DNA metabolic process;GO:0051320	gi|311264709|ref|XP_003130298.1|/0/PREDICTED: hypothetical protein LOC100516100 [Sus scrofa]
gnl|UG|Ssc#S35169748	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:LVR010021H09, expressed in liver /gb=AK232326 /gi=115550091 /ug=Ssc.3721 /len=2605"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0019787//small conjugating protein ligase activity;GO:0008134//transcription factor binding	GO:0000209//protein polyubiquitination;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0030260//entry into host cell;GO:0051051//negative regulation of transport;GO:0043392//negative regulation of DNA binding;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0032409	gi|301776554|ref|XP_002923696.1|/8.92662e-173/PREDICTED: NEDD4-like E3 ubiquitin-protein ligase WWP2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S41575470	0	0	0	0	9	2.7	"PIC-A-1649 Sus Scrofa Adipocyte Zap Express Library After differentiation Sus scrofa cDNA clone SS-AA-5-3a-T3_H21, mRNA sequence /clone=SS-AA-5-3a-T3_H21 /gb=EH006358 /gi=161451542 /ug=Ssc.81842 /len=653"	GO:0031091//platelet alpha granule;GO:0005578//proteinaceous extracellular matrix	GO:0005515//protein binding	GO:0050896//response to stimulus;GO:0001775//cell activation;GO:0006887//exocytosis;GO:0007599//hemostasis	"gi|119582071|gb|EAW61667.1|/5.55904e-62/secreted protein, acidic, cysteine-rich (osteonectin), isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S55323493	2	0.58	3	0.86	7	2.1	"Sus scrofa mRNA, clone:AMP010100D05, expressed in alveolar macrophages /gb=AK343988 /gi=288781379 /ug=Ssc.7419 /len=2043"	-	GO:0004661//protein geranylgeranyltransferase activity;GO:0043169//cation binding	GO:0043412;GO:0050953//sensory perception of light stimulus	gi|1552549|emb|CAA69383.1|/2.03014e-90/rab geranylgeranyl transferase [Homo sapiens]
gnl|UG|Ssc#S55318446	16	4.61	10	2.86	5	1.5	"Sus scrofa mRNA, clone:MLN010075F02, expressed in mesenteric lymph nodes /gb=AK346920 /gi=288786438 /ug=Ssc.18934 /len=898"	-	-	-	gi|311251288|ref|XP_003124531.1|/6.70863e-82/PREDICTED: b-cell CLL/lymphoma 7 protein family member C-like [Sus scrofa]
gnl|UG|Ssc#S23758884	162	46.64	334	95.47	84	25.24	"1116078 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN116503 /gi=59810763 /ug=Ssc.5338 /len=766"	-	-	-	-
gnl|UG|Ssc#S58309135	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa kaptin (actin binding protein) (KPTN), mRNA /cds=p(539,1810) /gb=XM_003127264 /gi=311257823 /ug=Ssc.49257 /len=1810"	GO:0005902//microvillus;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0030427//site of polarized growth;GO:0015630//microtubule cytoskeleton	GO:0008092//cytoskeletal protein binding	GO:0050954//sensory perception of mechanical stimulus;GO:0030036//actin cytoskeleton organization	gi|311257824|ref|XP_003127312.1|/0/PREDICTED: kaptin-like [Sus scrofa]
gnl|UG|Ssc#S55324263	0	0	3	0.86	2	0.6	"Sus scrofa mRNA, clone:ADR010100E01, expressed in adrenal gland /gb=AK343595 /gi=288780609 /ug=Ssc.52480 /len=1993"	-	-	-	-
gnl|UG|Ssc#S55319238	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:LVRM10186H02, expressed in liver /gb=AK346454 /gi=288785646 /ug=Ssc.78178 /len=1517"	-	-	-	gi|194225251|ref|XP_001916678.1|/6.99682e-113/PREDICTED: similar to Uncharacterized protein C14orf145 [Equus caballus]
gnl|UG|Ssc#S35169352	16	4.61	5	1.43	5	1.5	"Sus scrofa mRNA, clone:THY010026C01, expressed in thymus /gb=AK238752 /gi=115550487 /ug=Ssc.6873 /len=1905"	GO:0005815//microtubule organizing center;GO:0005626//insoluble fraction;GO:0031234//extrinsic to internal side of plasma membrane;GO:0030141//stored secretory granule	GO:0032561;GO:0001664//G-protein-coupled receptor binding;GO:0017111//nucleoside-triphosphatase activity;GO:0060089;GO:0032403//protein complex binding	"GO:0031280;GO:0007599//hemostasis;GO:0051046//regulation of secretion;GO:0009207;GO:0016192//vesicle-mediated transport;GO:0007188//G-protein signaling, coupled to cAMP nucleotide second messenger;GO:0050804//regulation of synaptic transmission;GO:0001775//cell activation"	"gi|148670001|gb|EDL01948.1|/0/guanine nucleotide binding protein, alpha inhibiting 3, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S46876697	0	0	3	0.86	5	1.5	"PREDICTED: Sus scrofa heat shock 27kDa protein 8 (LOC100155338), mRNA /cds=p(349,939) /gb=XM_001929585 /gi=311270646 /ug=Ssc.10237 /len=1801"	GO:0043231//intracellular membrane-bounded organelle	GO:0004672//protein kinase activity;GO:0005515//protein binding	GO:0006950//response to stress;GO:0009987//cellular process	gi|194042970|ref|XP_001929620.1|/6.50899e-92/PREDICTED: heat shock protein beta-8 [Sus scrofa]
gnl|UG|Ssc#S23691482	5	1.44	2	0.57	4	1.2	"1097531 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN102581 /gi=59775357 /ug=Ssc.15701 /len=820"	-	-	-	-
gnl|UG|Ssc#S58303186	0	0	0	0	0	0	"PREDICTED: Sus scrofa pleckstrin homology domain containing, family G (with RhoGef domain) member 2 (PLEKHG2), mRNA /cds=p(1,4023) /gb=XM_003133207 /gi=311271956 /ug=Ssc.47509 /len=4023"	GO:0044444//cytoplasmic part	GO:0005088//Ras guanyl-nucleotide exchange factor activity	GO:0006917//induction of apoptosis;GO:0009966//regulation of signal transduction;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007264//small GTPase mediated signal transduction	gi|311271957|ref|XP_003133255.1|/0/PREDICTED: pleckstrin homology domain-containing family G member 2-like [Sus scrofa]
gnl|UG|Ssc#S55320173	9	2.59	29	8.29	11	3.31	"Sus scrofa mRNA, clone:LVR010054E06, expressed in liver /gb=AK345917 /gi=288784699 /ug=Ssc.841 /len=1847"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0031234//extrinsic to internal side of plasma membrane	GO:0032561;GO:0005102//receptor binding;GO:0017111//nucleoside-triphosphatase activity;GO:0060089;GO:0032403//protein complex binding	"GO:0035588;GO:0031280;GO:0007599//hemostasis;GO:0008283//cell proliferation;GO:0009207;GO:0007188//G-protein signaling, coupled to cAMP nucleotide second messenger;GO:0050804//regulation of synaptic transmission;GO:0032413//negative regulation of ion transmembrane transporter activity;GO:0001775//cell activation;GO:0031667//response to nutrient levels;GO:0000165//MAPKKK cascade"	gi|178056732|ref|NP_001116588.1|/0/guanine nucleotide-binding protein G(i) subunit alpha-2 [Sus scrofa]
gnl|UG|Ssc#S35167252	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10197G04, expressed in ovary /gb=AK236492 /gi=115552487 /ug=Ssc.34974 /len=2209"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0006325//chromatin organization;GO:0032501//multicellular organismal process	gi|115498006|ref|NP_001069088.1|/0/protein BANP [Bos taurus]
gnl|UG|Ssc#S35172613	0	0	0	0	6	1.8	"Sus scrofa mRNA, clone:OVR010093E12, expressed in ovary /gb=AK234595 /gi=115547222 /ug=Ssc.26415 /len=1863"	GO:0043189//H4/H2A histone acetyltransferase complex	GO:0004468//lysine N-acetyltransferase activity;GO:0046914//transition metal ion binding	"GO:0050789//regulation of biological process;GO:0006915//apoptosis;GO:0006351//transcription, DNA-dependent;GO:0016573//histone acetylation"	gi|311275548|ref|XP_003134787.1|/0/PREDICTED: inhibitor of growth protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58301425	353	101.63	363	103.76	204	61.31	"PREDICTED: Sus scrofa hypothetical protein LOC100522912 (LOC100522912), mRNA /cds=p(1,726) /gb=XM_003134972 /gi=311276024 /ug=Ssc.58542 /len=4561"	GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation	gi|311276025|ref|XP_003135020.1|/7.08382e-99/PREDICTED: hypothetical protein LOC100522912 [Sus scrofa]
gnl|UG|Ssc#S22283762	4	1.15	19	5.43	10	3.01	"CJ026492 full-length enriched swine cDNA library, adult trachea Sus scrofa cDNA clone TCH01E060057 5', mRNA sequence /clone=TCH01E060057 /clone_end=5' /gb=CJ026492 /gi=54536493 /ug=Ssc.16334 /len=813"	-	-	-	-
gnl|UG|Ssc#S20937644	41	11.8	13	3.72	38	11.42	"AJ649367 CSEQRAN19 Sus scrofa cDNA clone C0003272_E18, mRNA sequence /clone=C0003272_E18 /gb=AJ649367 /gi=49326212 /ug=Ssc.74104 /len=576"	GO:0034358//plasma lipoprotein particle;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0010876;GO:0051234//establishment of localization;GO:0016125//sterol metabolic process	"gi|149037502|gb|EDL91933.1|/1.20884e-61/high density lipoprotein binding protein, isoform CRA_e [Rattus norvegicus]"
gnl|UG|Ssc#S31102689	0	0	2	0.57	2	0.6	"1498128 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY406527 /gi=87207830 /ug=Ssc.61280 /len=701"	-	-	-	-
gnl|UG|Ssc#S35168912	58	16.7	18	5.15	44	13.22	"Sus scrofa mRNA, clone:OVRM10127B11, expressed in ovary /gb=AK235935 /gi=115550860 /ug=Ssc.13983 /len=2008"	GO:0043231//intracellular membrane-bounded organelle;GO:0000267//cell fraction;GO:0005819//spindle;GO:0008287//protein serine/threonine phosphatase complex;GO:0044444//cytoplasmic part;GO:0044427;GO:0016020//membrane	GO:0004721//phosphoprotein phosphatase activity;GO:0043169//cation binding;GO:0046983//protein dimerization activity	GO:0022403;GO:0046519;GO:0009894;GO:0006915//apoptosis;GO:0016055//Wnt receptor signaling pathway;GO:0006396//RNA processing;GO:0016049//cell growth;GO:0046578//regulation of Ras protein signal transduction;GO:0001837//epithelial to mesenchymal transition;GO:0050793//regulation of developmental process;GO:0012502//induction of programmed cell death;GO:0000302//response to reactive oxygen species;GO:0006260//DNA replication;GO:0007155//cell adhesion;GO:0000165//MAPKKK cascade;GO:0051291//protein heterooligomerization;GO:0045860//positive regulation of protein kinase activity;GO:0042503//tyrosine phosphorylation of Stat3 protein;GO:0006511//ubiquitin-dependent protein catabolic process	gi|126290202|ref|XP_001371054.1|/0/PREDICTED: hypothetical protein [Monodelphis domestica]
gnl|UG|Ssc#S58305191	51	14.68	5	1.43	30	9.02	"PREDICTED: Sus scrofa 28S ribosomal protein S7, mitochondrial-like, transcript variant 1 (LOC100525357), mRNA /cds=p(240,968) /gb=XM_003131206 /gi=311266790 /ug=Ssc.54240 /len=1425"	GO:0043231//intracellular membrane-bounded organelle;GO:0015935//small ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|311266791|ref|XP_003131254.1|/1.17103e-130/PREDICTED: 28S ribosomal protein S7, mitochondrial-like isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S58303374	13	3.74	4	1.14	8	2.4	"PREDICTED: Sus scrofa egl nine homolog 1 (C. elegans) (EGLN1), partial mRNA /cds=p(1,1686) /gb=XM_003133025 /gi=311271168 /ug=Ssc.33171 /len=4195"	GO:0044444//cytoplasmic part	"GO:0019842//vitamin binding;GO:0046914//transition metal ion binding;GO:0016706//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	GO:0033483;GO:0043392//negative regulation of DNA binding;GO:0008152//metabolic process;GO:0006950//response to stress	"gi|311271169|ref|XP_003133073.1|/0/PREDICTED: LOW QUALITY PROTEIN: egl nine homolog 1, partial [Sus scrofa]"
gnl|UG|Ssc#S46877524	5	1.44	2	0.57	7	2.1	"PREDICTED: Sus scrofa actin-related protein 8, transcript variant 1 (LOC100154005), mRNA /cds=p(55,1929) /gb=XM_001929049 /gi=311269028 /ug=Ssc.46918 /len=2595"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	-	GO:0000087//M phase of mitotic cell cycle	gi|194041255|ref|XP_001929084.1|/0/PREDICTED: actin-related protein 8 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58309090	0	0	0	0	0	0	"PREDICTED: Sus scrofa aldehyde dehydrogenase family 16 member A1-like, transcript variant 1 (LOC100514292), mRNA /cds=p(70,2478) /gb=XM_003127308 /gi=311257918 /ug=Ssc.54795 /len=2706"	-	GO:0005488//binding;GO:0003824//catalytic activity	GO:0008152//metabolic process	gi|311257919|ref|XP_003127356.1|/0/PREDICTED: aldehyde dehydrogenase family 16 member A1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55325172	969	278.98	751	214.67	819	246.13	"Sus scrofa mRNA, clone:PTG010071C08, expressed in pituitary gland /gb=AK349436 /gi=288779700 /ug=Ssc.16653 /len=972"	-	-	-	-
gnl|UG|Ssc#S35171275	16	4.61	17	4.86	14	4.21	"Sus scrofa mRNA, clone:ITT010091B01, expressed in intestine /gb=AK231548 /gi=115548564 /ug=Ssc.1548 /len=1707"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0008375//acetylglucosaminyltransferase activity	GO:0006506//GPI anchor biosynthetic process	gi|264681464|ref|NP_001161126.1|/6.15684e-161/phosphatidylinositol N-acetylglucosaminyltransferase subunit C [Sus scrofa]
gnl|UG|Ssc#S58307324	34	9.79	8	2.29	14	4.21	"PREDICTED: Sus scrofa g-rich sequence factor 1-like (LOC100516986), mRNA /cds=p(93,1532) /gb=XM_003129072 /gi=311262313 /ug=Ssc.12808 /len=2714"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0002009//morphogenesis of an epithelium;GO:0003002//regionalization	gi|311262314|ref|XP_003129120.1|/0/PREDICTED: g-rich sequence factor 1-like [Sus scrofa]
gnl|UG|Ssc#S58306351	320	92.13	315	90.04	313	94.06	"PREDICTED: Sus scrofa dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like (LOC100511525), mRNA /cds=p(109,2226) /gb=XM_003130046 /gi=311264291 /ug=Ssc.57793 /len=2951"	GO:0005789//endoplasmic reticulum membrane;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0004576//oligosaccharyl transferase activity	GO:0006487//protein N-linked glycosylation	gi|74150375|dbj|BAE32233.1|/0/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S58309686	7	2.02	0	0	0	0	"PREDICTED: Sus scrofa nuclear receptor subfamily 2 group C member 1-like (LOC100516014), mRNA /cds=p(1,1818) /gb=XM_003126708 /gi=311256681 /ug=Ssc.10207 /len=2158"	GO:0016604//nuclear body	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0042802//identical protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0019899//enzyme binding;GO:0003677//DNA binding;GO:0004879//ligand-dependent nuclear receptor activity	GO:0009755//hormone-mediated signaling pathway;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|311256682|ref|XP_003126756.1|/0/PREDICTED: nuclear receptor subfamily 2 group C member 1-like [Sus scrofa]
gnl|UG|Ssc#S39788144	21	6.05	17	4.86	6	1.8	"rdbla0120_i20.y1 bla Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV883422 /gi=178585301 /ug=Ssc.77177 /len=622"	-	-	-	gi|311262916|ref|XP_003129414.1|/1.4268e-40/PREDICTED: uncharacterized protein C4orf22 homolog [Sus scrofa]
gnl|UG|Ssc#S58313339	149	42.9	170	48.59	54	16.23	"PREDICTED: Sus scrofa dual specificity mitogen-activated protein kinase kinase 2-like (LOC100525505), mRNA /cds=p(1,864) /gb=XM_003123075 /gi=311248375 /ug=Ssc.55201 /len=2222"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0004712//protein serine/threonine/tyrosine kinase activity;GO:0032559	GO:0002224//toll-like receptor signaling pathway;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007264//small GTPase mediated signal transduction;GO:0006935//chemotaxis;GO:0000187//activation of MAPK activity	gi|311248376|ref|XP_003123123.1|/2.74346e-143/PREDICTED: dual specificity mitogen-activated protein kinase kinase 2-like [Sus scrofa]
gnl|UG|Ssc#S58305389	4	1.15	0	0	3	0.9	"PREDICTED: Sus scrofa diaphanous homolog 3 (Drosophila) (DIAPH3), mRNA /cds=p(1,2949) /gb=XM_003131009 /gi=311266345 /ug=Ssc.43686 /len=2949"	-	GO:0005515//protein binding	GO:0016043//cellular component organization	gi|311266346|ref|XP_003131057.1|/0/PREDICTED: protein diaphanous homolog 3-like [Sus scrofa]
gnl|UG|Ssc#S17526884	0	0	10	2.86	0	0	"BX675842 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0034.j.13 3prim, mRNA sequence /clone=scac0034.j.13 /clone_end=3' /gb=BX675842 /gi=90235522 /ug=Ssc.49421 /len=700"	-	-	-	-
gnl|UG|Ssc#S55323720	13	3.74	6	1.72	17	5.11	"Sus scrofa mRNA, clone:SPL010027H08, expressed in spleen /gb=AK350291 /gi=288781152 /ug=Ssc.7464 /len=1035"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0003676//nucleic acid binding;GO:0034062//RNA polymerase activity;GO:0016301//kinase activity	"GO:0006289//nucleotide-excision repair;GO:0051704;GO:0000377;GO:0006352//transcription initiation, DNA-dependent;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	"gi|14589951|ref|NP_002686.2|/2.74841e-109/DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Homo sapiens]"
gnl|UG|Ssc#S35166342	23	6.62	11	3.14	22	6.61	"Sus scrofa mRNA, clone:OVRM10207B02, expressed in ovary /gb=AK236599 /gi=115553396 /ug=Ssc.23971 /len=2279"	GO:0000267//cell fraction;GO:0044424//intracellular part;GO:0016020//membrane	GO:0008641//small protein activating enzyme activity;GO:0046983//protein dimerization activity	GO:0012502//induction of programmed cell death;GO:0006915//apoptosis;GO:0033314//mitotic cell cycle DNA replication checkpoint;GO:0032446//protein modification by small protein conjugation	gi|114663003|ref|XP_001159481.1|/0/PREDICTED: amyloid beta precursor protein-binding protein 1 isoform 6 [Pan troglodytes]
gnl|UG|Ssc#S39972372	2455	706.81	904	258.41	3341	1004.06	"rduo410b_h15.y1 duo Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW067437 /gi=181229074 /ug=Ssc.53782 /len=705"	GO:0015935//small ribosomal subunit	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0007049//cell cycle;GO:0022613//ribonucleoprotein complex biogenesis;GO:0031016//pancreas development	gi|281338468|gb|EFB14052.1|/1.73198e-46/hypothetical protein PANDA_002275 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40004067	6	1.73	8	2.29	6	1.8	"rece13c_d9.y1 ece Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW098976 /gi=181212404 /ug=Ssc.67135 /len=306"	-	-	-	-
gnl|UG|Ssc#S58313522	6	1.73	0	0	3	0.9	"PREDICTED: Sus scrofa N-acetyltransferase 10 (GCN5-related) (NAT10), mRNA /cds=p(126,3206) /gb=XM_003122875 /gi=311248004 /ug=Ssc.4563 /len=3870"	GO:0031981//nuclear lumen	GO:0016407//acetyltransferase activity;GO:0032559	-	gi|311248005|ref|XP_003122923.1|/0/PREDICTED: n-acetyltransferase 10-like [Sus scrofa]
gnl|UG|Ssc#S55325432	0	0	2	0.57	2	0.6	"Sus scrofa mRNA, clone:PTG010024H10, expressed in pituitary gland /gb=AK349219 /gi=288779394 /ug=Ssc.22299 /len=1991"	GO:0005887//integral to plasma membrane	GO:0005267//potassium channel activity;GO:0005515//protein binding	GO:0030001//metal ion transport	gi|297708771|ref|XP_002831129.1|/1.34546e-77/PREDICTED: BTB/POZ domain-containing protein KCTD17-like [Pongo abelii]
gnl|UG|Ssc#S58312390	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa IK cytokine, down-regulator of HLA II (IK), mRNA /cds=p(77,2953) /gb=XM_003124015 /gi=311250310 /ug=Ssc.1821 /len=3552"	GO:0044421//extracellular region part;GO:0000267//cell fraction	-	GO:0007154//cell communication;GO:0002376//immune system process	gi|311250311|ref|XP_003124063.1|/0/PREDICTED: protein Red-like [Sus scrofa]
gnl|UG|Ssc#S35164119	10	2.88	2	0.57	9	2.7	"Sus scrofa mRNA, clone:SPL010015G07, expressed in spleen /gb=AK237239 /gi=115555607 /ug=Ssc.55263 /len=2244"	-	GO:0046914//transition metal ion binding	-	gi|73953721|ref|XP_853121.1|/1.25157e-127/PREDICTED: similar to Y43E12A.2 [Canis familiaris]
gnl|UG|Ssc#S58314919	7	2.02	17	4.86	13	3.91	"PREDICTED: Sus scrofa transcription factor 12-like, transcript variant 2 (LOC100512080), mRNA /cds=p(23,2143) /gb=XM_003121486 /gi=311244668 /ug=Ssc.21661 /len=4531"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0002376//immune system process;GO:0048513//organ development"	gi|311244669|ref|XP_003121534.1|/0/PREDICTED: transcription factor 12-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58313930	17	4.89	0	0	9	2.7	"PREDICTED: Sus scrofa beta-adrenergic receptor kinase 1-like (LOC100513842), mRNA /cds=p(1,2070) /gb=XM_003122468 /gi=311247168 /ug=Ssc.48012 /len=3211"	GO:0005626//insoluble fraction;GO:0030425//dendrite;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0060089;GO:0031753;GO:0031690;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0001541//ovarian follicle development;GO:0010033//response to organic substance;GO:0015031//protein transport;GO:0002029//desensitization of G-protein coupled receptor protein signaling pathway;GO:0000302//response to reactive oxygen species;GO:0010863//positive regulation of phospholipase C activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006468//protein phosphorylation;GO:0048522;GO:0003057;GO:0006942//regulation of striated muscle contraction	gi|311247169|ref|XP_003122516.1|/0/PREDICTED: beta-adrenergic receptor kinase 1-like [Sus scrofa]
gnl|UG|Ssc#S58310639	27	7.77	2	0.57	13	3.91	"PREDICTED: Sus scrofa protein S100-A10-like (LOC100515138), mRNA /cds=p(96,389) /gb=XM_003125758 /gi=311254302 /ug=Ssc.508 /len=1665"	GO:0019898//extrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0050793//regulation of developmental process;GO:0001101//response to acid;GO:0044093;GO:0023052//signaling	gi|73981599|ref|XP_533060.2|/6.37885e-54/PREDICTED: similar to S100 calcium-binding protein A10 [Canis familiaris]
gnl|UG|Ssc#S58302443	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa chondroitin sulfate proteoglycan 4-like (LOC100516884), mRNA /cds=p(1,7302) /gb=XM_003133955 /gi=311273714 /ug=Ssc.24536 /len=7302"	GO:0044425//membrane part	-	GO:0050794//regulation of cellular process	gi|311273715|ref|XP_003134003.1|/0/PREDICTED: chondroitin sulfate proteoglycan 4-like [Sus scrofa]
gnl|UG|Ssc#S35164477	23	6.62	19	5.43	23	6.91	"Sus scrofa mRNA, clone:MLN010055B01, expressed in mesenteric lymph node /gb=AK233864 /gi=115555249 /ug=Ssc.3113 /len=1037"	-	-	-	-
gnl|UG|Ssc#S35167492	34	9.79	16	4.57	45	13.52	"Sus scrofa mRNA, clone:AMP010009G02, expressed in alveolar macrophage /gb=AK230556 /gi=115552247 /ug=Ssc.224 /len=2322"	GO:0001669//acrosomal vesicle;GO:0043234//protein complex;GO:0042995//cell projection;GO:0044429//mitochondrial part	"GO:0000166//nucleotide binding;GO:0031405//lipoic acid binding;GO:0016668//oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor"	GO:0006086//acetyl-CoA biosynthetic process from pyruvate;GO:0043648//dicarboxylic acid metabolic process;GO:0043603//cellular amide metabolic process;GO:0003006//developmental process involved in reproduction;GO:0009063//cellular amino acid catabolic process;GO:0006790//sulfur compound metabolic process;GO:0009060//aerobic respiration;GO:0006873//cellular ion homeostasis;GO:0048598//embryonic morphogenesis;GO:0006553//lysine metabolic process;GO:0022904//respiratory electron transport chain;GO:0019538//protein metabolic process	"gi|47522940|ref|NP_999227.1|/0/dihydrolipoyl dehydrogenase, mitochondrial precursor [Sus scrofa]"
gnl|UG|Ssc#S58314845	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1-like (LOC100520287), mRNA /cds=p(269,4657) /gb=XM_003121549 /gi=311244873 /ug=Ssc.32329 /len=4670"	GO:0044444//cytoplasmic part	GO:0016791//phosphatase activity;GO:0000828//inositol hexakisphosphate kinase activity;GO:0032559	GO:0019751	gi|311244874|ref|XP_003121597.1|/0/PREDICTED: inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1-like [Sus scrofa]
gnl|UG|Ssc#S46879777	94	27.06	69	19.72	50	15.03	"PREDICTED: Sus scrofa pre-mRNA-splicing factor 38B-like (LOC100154667), mRNA /cds=p(285,1928) /gb=XM_001927806 /gi=194036571 /ug=Ssc.81327 /len=3741"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0006396//RNA processing	gi|194036572|ref|XP_001927841.1|/6.31995e-106/PREDICTED: pre-mRNA-splicing factor 38B-like [Sus scrofa]
gnl|UG|Ssc#S35174036	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVR010031A01, expressed in ovary /gb=AK234232 /gi=115545799 /ug=Ssc.80943 /len=1459"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0019899//enzyme binding	GO:0010467//gene expression	gi|3228540|gb|AAC23591.1|/0/zinc finger protein [Homo sapiens]
gnl|UG|Ssc#S46877758	224	64.49	58	16.58	128	38.47	"PREDICTED: Sus scrofa Mitochondrial ribosomal protein L3 (LOC100156322), mRNA /cds=p(1,1200) /gb=XM_001925038 /gi=311268534 /ug=Ssc.54078 /len=2210"	GO:0000315//organellar large ribosomal subunit;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|311268535|ref|XP_001925073.2|/0/PREDICTED: 39S ribosomal protein L3, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S39940499	71	20.44	67	19.15	39	11.72	"rcte11_h24.y1 cte Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW035564 /gi=181333756 /ug=Ssc.25510 /len=615"	-	-	GO:0048731	gi|301760275|ref|XP_002915941.1|/1.92876e-26/PREDICTED: small EDRK-rich factor 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46876839	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa bicaudal C homolog 1 (Drosophila) (BICC1), mRNA /cds=p(1,2925) /gb=XM_001929123 /gi=311271233 /ug=Ssc.93209 /len=2925"	-	GO:0003676//nucleic acid binding	GO:0032501//multicellular organismal process	gi|194042678|ref|XP_001929158.1|/0/PREDICTED: protein bicaudal C homolog 1 [Sus scrofa]
gnl|UG|Ssc#S35167459	15	4.32	20	5.72	27	8.11	"Sus scrofa mRNA, clone:AMP010013D04, expressed in alveolar macrophage /gb=AK230589 /gi=115552280 /ug=Ssc.22175 /len=2121"	GO:0031981//nuclear lumen	-	-	gi|194219571|ref|XP_001917195.1|/3.58924e-52/PREDICTED: similar to CGI-117 protein [Equus caballus]
gnl|UG|Ssc#S35168058	6	1.73	2	0.57	3	0.9	"Sus scrofa mRNA, clone:THY010063C04, expressed in thymus /gb=AK239096 /gi=115551632 /ug=Ssc.13903 /len=1705"	GO:0044444//cytoplasmic part	"GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups"	GO:0006596//polyamine biosynthetic process;GO:0000096//sulfur amino acid metabolic process	gi|78369282|ref|NP_001030548.1|/0/spermine synthase [Bos taurus]
gnl|UG|Ssc#S58308825	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa mitotic spindle assembly checkpoint protein MAD2B-like (LOC100523970), mRNA /cds=p(528,1163) /gb=XM_003127567 /gi=311258453 /ug=Ssc.18586 /len=1655"	GO:0031981//nuclear lumen;GO:0000152//nuclear ubiquitin ligase complex;GO:0042575;GO:0015630//microtubule cytoskeleton	GO:0016779//nucleotidyltransferase activity;GO:0019901//protein kinase binding	GO:0001934//positive regulation of protein phosphorylation;GO:0032583//regulation of gene-specific transcription;GO:0000725//recombinational repair;GO:0019985//translesion synthesis;GO:0042770//signal transduction in response to DNA damage;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0032435//negative regulation of proteasomal ubiquitin-dependent protein catabolic process;GO:0016567//protein ubiquitination;GO:0009416//response to light stimulus;GO:0016049//cell growth;GO:0051098//regulation of binding	gi|311258454|ref|XP_003127615.1|/9.61351e-111/PREDICTED: mitotic spindle assembly checkpoint protein MAD2B-like [Sus scrofa]
gnl|UG|Ssc#S35167606	18	5.18	2	0.57	22	6.61	"Sus scrofa mRNA, clone:THY010093C08, expressed in thymus /gb=AK239326 /gi=115552133 /ug=Ssc.396 /len=1988"	GO:0070603//SWI/SNF-type complex;GO:0000790//nuclear chromatin	"GO:0030528//transcription regulator activity;GO:0042393//histone binding;GO:0000166//nucleotide binding;GO:0003712//transcription cofactor activity;GO:0035258//steroid hormone receptor binding;GO:0042623//ATPase activity, coupled"	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0008544//epidermis development;GO:0033144//negative regulation of steroid hormone receptor signaling pathway;GO:0001824//blastocyst development;GO:0007420//brain development;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0007090//regulation of S phase of mitotic cell cycle;GO:0009887//organ morphogenesis;GO:0030154//cell differentiation;GO:0043388//positive regulation of DNA binding;GO:0016568//chromatin modification	gi|296485891|gb|DAA28006.1|/0/SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 [Bos taurus]
gnl|UG|Ssc#S58309940	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa uncharacterized protein C12orf69-like (LOC100511991), mRNA /cds=p(30,707) /gb=XM_003126459 /gi=311256110 /ug=Ssc.95476 /len=707"	GO:0031224//intrinsic to membrane	-	-	gi|311256111|ref|XP_003126507.1|/2.61687e-119/PREDICTED: uncharacterized protein C12orf69-like [Sus scrofa]
gnl|UG|Ssc#S58311247	12	3.45	25	7.15	12	3.61	"PREDICTED: Sus scrofa KLRAQ motif-containing protein 1-like (LOC100520130), mRNA /cds=p(1,2559) /gb=XM_003125155 /gi=311252652 /ug=Ssc.13556 /len=3171"	-	-	-	gi|311252653|ref|XP_003125203.1|/0/PREDICTED: KLRAQ motif-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55517455	775	223.13	1015	290.14	1187	356.73	"Sus scrofa calreticulin (CALR), mRNA /cds=p(64,1317) /gb=NM_001174133 /gi=291622245 /ug=Ssc.48945 /len=1919"	GO:0009986//cell surface;GO:0030529//ribonucleoprotein complex;GO:0030141//stored secretory granule;GO:0042598//vesicular fraction;GO:0030176//integral to endoplasmic reticulum membrane;GO:0031012//extracellular matrix	GO:0030528//transcription regulator activity;GO:0030246//carbohydrate binding;GO:0035258//steroid hormone receptor binding;GO:0003723//RNA binding;GO:0046914//transition metal ion binding;GO:0019899//enzyme binding;GO:0001846//opsonin binding	GO:0031958;GO:0006915//apoptosis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0045807//positive regulation of endocytosis;GO:0048232//male gamete generation;GO:0007126//meiosis;GO:0051726//regulation of cell cycle;GO:0007569//cell aging;GO:0006874//cellular calcium ion homeostasis;GO:0045596//negative regulation of cell differentiation;GO:0006605//protein targeting;GO:0010226//response to lithium ion;GO:0002397//MHC class I protein complex assembly;GO:0043627//response to estrogen stimulus;GO:0006275//regulation of DNA replication;GO:0009968//negative regulation of signal transduction;GO:0008283//cell proliferation;GO:0030036//actin cytoskeleton organization;GO:0006412//translation;GO:0006457//protein folding;GO:0031647//regulation of protein stability;GO:0006487//protein N-linked glycosylation;GO:0035051//cardiac cell differentiation	gi|291622246|ref|NP_001167604.1|/0/calreticulin [Sus scrofa]
gnl|UG|Ssc#S58310671	268	77.16	430	122.91	214	64.31	"PREDICTED: Sus scrofa ubiquitin associated protein 2-like, transcript variant 2 (UBAP2L), mRNA /cds=p(169,3432) /gb=XM_003125727 /gi=311254211 /ug=Ssc.40410 /len=3982"	GO:0000123//histone acetyltransferase complex	GO:0005488//binding	GO:0035036//sperm-egg recognition	gi|311254214|ref|XP_003125776.1|/0/PREDICTED: ubiquitin-associated protein 2-like isoform 3 [Sus scrofa]
gnl|UG|Ssc#S58312552	35	10.08	17	4.86	46	13.82	"PREDICTED: Sus scrofa coiled-coil domain-containing protein 112-like (LOC100520234), mRNA /cds=p(186,659) /gb=XM_003123849 /gi=311249976 /ug=Ssc.5749 /len=1359"	-	-	-	gi|114601273|ref|XP_517884.2|/1.36422e-64/PREDICTED: coiled-coil domain containing 112 [Pan troglodytes]
gnl|UG|Ssc#S46875960	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa prion protein (PRNP), mRNA /cds=p(1,4677) /gb=XM_001929327 /gi=311274753 /ug=Ssc.54141 /len=5098"	GO:0016459//myosin complex	GO:0008092//cytoskeletal protein binding;GO:0017111//nucleoside-triphosphatase activity;GO:0032559	-	gi|311274754|ref|XP_001929362.2|/0/PREDICTED: myosin-7B [Sus scrofa]
gnl|UG|Ssc#S19544136	0	0	2	0.57	0	0	"949397 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN160232 /gi=46174662 /ug=Ssc.85290 /len=906"	GO:0043234//protein complex	-	GO:0016192//vesicle-mediated transport	gi|296487606|gb|DAA29719.1|/6.44529e-165/KIAA1033-like [Bos taurus]
gnl|UG|Ssc#S17515105	2	0.58	0	0	0	0	"BX669674 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0028.b.12 5prim, mRNA sequence /clone=scac0028.b.12 /clone_end=5' /gb=BX669674 /gi=117784260 /ug=Ssc.53926 /len=846"	"GO:0043231//intracellular membrane-bounded organelle;GO:0000781//chromosome, telomeric region"	GO:0003676//nucleic acid binding;GO:0046872//metal ion binding	"GO:0000723//telomere maintenance;GO:0006351//transcription, DNA-dependent"	gi|149722699|ref|XP_001493994.1|/1.58957e-82/PREDICTED: similar to Zinc finger and SCAN domain-containing protein 4 [Equus caballus]
gnl|UG|Ssc#S18290644	0	0	0	0	2	0.6	"BP142369 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVR010017C07 5', mRNA sequence /clone=OVR010017C07 /clone_end=5' /gb=BP142369 /gi=40391840 /ug=Ssc.72319 /len=882"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0016857//racemase and epimerase activity, acting on carbohydrates and derivatives"	GO:0030205	gi|221043648|dbj|BAH13501.1|/8.98263e-124/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S18387444	6	1.73	0	0	7	2.1	"938869 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK467557 /gi=40838834 /ug=Ssc.4046 /len=850"	GO:0032991//macromolecular complex;GO:0034399//nuclear periphery;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	"GO:0004086//carbamoyl-phosphate synthase activity;GO:0043169//cation binding;GO:0016743//carboxyl- or carbamoyltransferase activity;GO:0016812//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides;GO:0005515//protein binding;GO:0016301//kinase activity;GO:0016597//amino acid binding;GO:0032559"	GO:0006468//protein phosphorylation;GO:0019856//pyrimidine base biosynthetic process;GO:0006220//pyrimidine nucleotide metabolic process;GO:0006213//pyrimidine nucleoside metabolic process;GO:0009064//glutamine family amino acid metabolic process	"gi|297458674|ref|XP_002684311.1|/8.9404e-134/PREDICTED: carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase [Bos taurus]"
gnl|UG|Ssc#S58311054	3	0.86	4	1.14	0	0	"PREDICTED: Sus scrofa ATPase family, AAA domain containing 2B (ATAD2B), mRNA /cds=p(1,4065) /gb=XM_003125350 /gi=311253045 /ug=Ssc.12545 /len=4065"	-	GO:0032559;GO:0016462//pyrophosphatase activity	-	gi|311253046|ref|XP_003125398.1|/0/PREDICTED: ATPase family AAA domain-containing protein 2B-like [Sus scrofa]
gnl|UG|Ssc#S58312097	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase SMURF1-like (LOC100521958), mRNA /cds=p(1,2142) /gb=XM_003124318 /gi=311250909 /ug=Ssc.37544 /len=2142"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0032403//protein complex binding;GO:0046332//SMAD binding;GO:0019787//small conjugating protein ligase activity	GO:0048869;GO:0009888//tissue development;GO:0001503//ossification;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0030509//BMP signaling pathway;GO:0006605//protein targeting;GO:0016567//protein ubiquitination;GO:0007179//transforming growth factor beta receptor signaling pathway	gi|311250910|ref|XP_003124366.1|/0/PREDICTED: e3 ubiquitin-protein ligase SMURF1-like [Sus scrofa]
gnl|UG|Ssc#S55327519	8	2.3	3	0.86	10	3.01	"Sus scrofa mRNA, clone:MLTL10021H08, expressed in longissimus /gb=AK347130 /gi=288576535 /ug=Ssc.21968 /len=1535"	GO:0043229//intracellular organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0005488//binding	"GO:0019725//cellular homeostasis;GO:0015698//inorganic anion transport;GO:0000398//nuclear mRNA splicing, via spliceosome;GO:0003013"	gi|311263560|ref|XP_003129733.1|/6.91859e-92/PREDICTED: methylosome subunit pICln-like [Sus scrofa]
gnl|UG|Ssc#S35164523	3	0.86	0	0	4	1.2	"Sus scrofa mRNA, clone:MLN010039C08, expressed in mesenteric lymph node /gb=AK233818 /gi=115555203 /ug=Ssc.12412 /len=1010"	GO:0044432//endoplasmic reticulum part	-	-	gi|311271043|ref|XP_003133040.1|/2.58043e-80/PREDICTED: stromal cell-derived factor 2-like 1 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S23213494	3	0.86	4	1.14	2	0.6	"Sus scrofa clone Clu_131.scr.msk.p1.Contig2, mRNA sequence /gb=AY609483 /gi=52351078 /ug=Ssc.3593 /len=1502"	GO:0000323//lytic vacuole	GO:0004175//endopeptidase activity;GO:0005515//protein binding	GO:0010631//epithelial cell migration;GO:0019538//protein metabolic process;GO:0031647//regulation of protein stability;GO:0033189//response to vitamin A;GO:0060600	gi|47522632|ref|NP_999094.1|/0/cathepsin H precursor [Sus scrofa]
gnl|UG|Ssc#S23777117	3	0.86	0	0	2	0.6	"999977 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN134741 /gi=59829058 /ug=Ssc.71578 /len=826"	GO:0005901//caveola;GO:0031224//intrinsic to membrane;GO:0005813//centrosome;GO:0048770;GO:0005626//insoluble fraction	GO:0005488//binding	-	gi|190360675|ref|NP_001121955.1|/3.41727e-58/flotillin-1 [Sus scrofa]
gnl|UG|Ssc#S55327094	21	6.05	21	6	13	3.91	"Sus scrofa mRNA, clone:OVR010056C02, expressed in ovary /gb=AK347557 /gi=288576962 /ug=Ssc.43170 /len=3262"	GO:0031981//nuclear lumen;GO:0031252//cell leading edge;GO:0030141//stored secretory granule;GO:0042598//vesicular fraction;GO:0016020//membrane	GO:0004672//protein kinase activity;GO:0032559;GO:0019901//protein kinase binding	GO:0010466//negative regulation of peptidase activity;GO:0032868//response to insulin stimulus;GO:0006915//apoptosis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0002028//regulation of sodium ion transport;GO:0010828//positive regulation of glucose transport;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0008380//RNA splicing;GO:0005979//regulation of glycogen biosynthetic process;GO:0031328//positive regulation of cellular biosynthetic process;GO:0016477//cell migration;GO:0001934//positive regulation of protein phosphorylation;GO:0043408//regulation of MAPKKK cascade;GO:0010746;GO:0050921//positive regulation of chemotaxis;GO:0014823//response to activity;GO:0009991//response to extracellular stimulus;GO:0006950//response to stress;GO:0006635//fatty acid beta-oxidation	gi|311257563|ref|XP_003127183.1|/0/PREDICTED: RAC-beta serine/threonine-protein kinase-like [Sus scrofa]
gnl|UG|Ssc#S20939280	2	0.58	6	1.72	23	6.91	"AJ651003 CSEQRAN19 Sus scrofa cDNA clone C0003276_P03, mRNA sequence /clone=C0003276_P03 /gb=AJ651003 /gi=49327848 /ug=Ssc.85505 /len=439"	GO:0048500//signal recognition particle;GO:0030867//rough endoplasmic reticulum membrane	GO:0003723//RNA binding;GO:0043021//ribonucleoprotein binding	GO:0006448//regulation of translational elongation;GO:0006613//cotranslational protein targeting to membrane	gi|186910265|ref|NP_001119567.1|/1.87408e-42/signal recognition particle 9 kDa protein [Rattus norvegicus]
gnl|UG|Ssc#S46880810	28	8.06	18	5.15	20	6.01	"PREDICTED: Sus scrofa PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae) (PRPF39), mRNA /cds=p(164,2164) /gb=XM_001927120 /gi=194034404 /ug=Ssc.9448 /len=2897"	GO:0031981//nuclear lumen	-	GO:0006396//RNA processing	gi|194034405|ref|XP_001927155.1|/0/PREDICTED: pre-mRNA-processing factor 39 [Sus scrofa]
gnl|UG|Ssc#S6056164	0	0	0	0	0	0	"MI-P-E6-ahj-c-11-1-UM.s1 MI-P-E6 Sus scrofa cDNA clone MI-P-E6-ahj-c-11-1-UM 3', mRNA sequence /clone=MI-P-E6-ahj-c-11-1-UM /clone_end=3' /gb=BQ599449 /gi=21546175 /ug=Ssc.81423 /len=633"	-	-	-	-
gnl|UG|Ssc#S58308931	7	2.02	0	0	0	0	"PREDICTED: Sus scrofa protein phosphatase 6, regulatory subunit 1 (PPP6R1), mRNA /cds=p(14,2656) /gb=XM_003127452 /gi=311258238 /ug=Ssc.43178 /len=2656"	-	GO:0019902//phosphatase binding	GO:0010921	gi|311258239|ref|XP_003127500.1|/0/PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S46876202	14	4.03	9	2.57	5	1.5	"PREDICTED: Sus scrofa erythropoietin 4 immediate early response (LOC100158058), mRNA /cds=p(179,1459) /gb=XM_001926616 /gi=311272759 /ug=Ssc.6535 /len=2072"	GO:0016020//membrane;GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding	GO:0007166//cell surface receptor linked signaling pathway	gi|311272760|ref|XP_001926651.2|/1.7401e-168/PREDICTED: zinc finger CCCH domain-containing protein 15 [Sus scrofa]
gnl|UG|Ssc#S58305744	0	0	0	0	0	0	"PREDICTED: Sus scrofa interleukin-11 receptor subunit alpha-like (LOC100524166), mRNA /cds=p(1,2436) /gb=XM_003130670 /gi=311265538 /ug=Ssc.1639 /len=2889"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0070569	GO:0006012//galactose metabolic process	gi|311265539|ref|XP_003130718.1|/0/PREDICTED: interleukin-11 receptor subunit alpha-like [Sus scrofa]
gnl|UG|Ssc#S58306366	11	3.17	4	1.14	8	2.4	"PREDICTED: Sus scrofa uncharacterized protein C11orf61-like (LOC100523010), mRNA /cds=p(40,1815) /gb=XM_003130028 /gi=311264261 /ug=Ssc.31468 /len=2481"	-	-	-	gi|311264262|ref|XP_003130076.1|/0/PREDICTED: uncharacterized protein C11orf61-like [Sus scrofa]
gnl|UG|Ssc#S38479050	0	0	0	0	0	0	"Sus scrofa H+ coupled di/tri-peptide cotransporter 2 (slc15A2) mRNA, complete cds /cds=p(28,2217) /gb=EF527255 /gi=145688451 /ug=Ssc.94556 /len=2222"	GO:0016021//integral to membrane;GO:0005626//insoluble fraction	GO:0005488//binding;GO:0015238//drug transmembrane transporter activity;GO:0015198//oligopeptide transporter activity;GO:0015295//solute:hydrogen symporter activity	GO:0015893//drug transport;GO:0006857//oligopeptide transport	gi|147905019|ref|NP_001090983.1|/0/solute carrier family 15 member 2 [Sus scrofa]
gnl|UG|Ssc#S35173706	0	0	0	0	0	0	"Sus scrofa mRNA, clone:UTR010059H09, expressed in uterus /gb=AK240367 /gi=115546129 /ug=Ssc.1755 /len=1226"	GO:0044444//cytoplasmic part	"GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups;GO:0070567"	GO:0005975//carbohydrate metabolic process;GO:0008610//lipid biosynthetic process	gi|297591981|ref|NP_001172068.1|/0/sialic acid synthase [Sus scrofa]
gnl|UG|Ssc#S31103963	358	103.07	950	271.56	1224	367.84	"1511317 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY407801 /gi=87209104 /ug=Ssc.72914 /len=522"	GO:0015935//small ribosomal subunit;GO:0031981//nuclear lumen	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0022618//ribonucleoprotein complex assembly	"gi|119624187|gb|EAX03782.1|/4.78032e-79/ribosomal protein S10, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S46880713	0	0	0	0	0	0	"PREDICTED: Sus scrofa programmed cell death 7 (PDCD7), mRNA /cds=p(1,1455) /gb=XM_001928779 /gi=311245293 /ug=Ssc.47825 /len=2486"	GO:0005681//spliceosomal complex	-	GO:0012502//induction of programmed cell death;GO:0016070//RNA metabolic process;GO:0031960//response to corticosteroid stimulus;GO:0010467//gene expression	gi|194034614|ref|XP_001928814.1|/4.24616e-124/PREDICTED: programmed cell death protein 7 [Sus scrofa]
gnl|UG|Ssc#S35166323	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10208F09, expressed in ovary /gb=AK236618 /gi=115553415 /ug=Ssc.1467 /len=2788"	GO:0044429//mitochondrial part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|296489553|gb|DAA31666.1|/0/threonyl-tRNA synthetase, mitochondrial [Bos taurus]"
gnl|UG|Ssc#S58311895	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa proline-rich protein 14-like (LOC100514519), mRNA /cds=p(8,1768) /gb=XM_003124506 /gi=311251317 /ug=Ssc.48731 /len=1870"	-	-	-	gi|311251318|ref|XP_003124554.1|/0/PREDICTED: proline-rich protein 14-like [Sus scrofa]
gnl|UG|Ssc#S55320607	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:THY010035B06, expressed in thymus /gb=AK351555 /gi=288784265 /ug=Ssc.4351 /len=1320"	GO:0043234//protein complex	-	GO:0009987//cellular process	gi|73974452|ref|XP_532327.2|/2.10777e-171/PREDICTED: similar to Protein KIAA0196 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S55324921	38	10.94	38	10.86	11	3.31	"Sus scrofa mRNA, clone:SKNB10026H02, expressed in skin /gb=AK349686 /gi=288779951 /ug=Ssc.5313 /len=1824"	-	-	-	gi|73947411|ref|XP_533579.2|/4.85459e-119/PREDICTED: hypothetical protein XP_533579 [Canis familiaris]
gnl|UG|Ssc#S35166421	12	3.45	5	1.43	7	2.1	"Sus scrofa mRNA, clone:LVRM10082D06, expressed in liver /gb=AK233115 /gi=115553317 /ug=Ssc.26161 /len=3128"	GO:0005622//intracellular	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding	-	gi|301777155|ref|XP_002924004.1|/0/PREDICTED: zinc finger protein 574-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S26716084	2	0.58	0	0	0	0	"AJ952168 KN404_1 Sus scrofa cDNA clone C0007741c14 3', mRNA sequence /clone=C0007741c14 /clone_end=3' /gb=AJ952168 /gi=74368984 /ug=Ssc.63532 /len=700"	-	-	-	-
gnl|UG|Ssc#S46880725	0	0	0	0	0	0	"PREDICTED: Sus scrofa 3-ketodihydrosphingosine reductase-like (LOC100152988), mRNA /cds=p(1,999) /gb=XM_001925913 /gi=311245224 /ug=Ssc.56165 /len=2239"	GO:0044421//extracellular region part;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0046914//transition metal ion binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"	GO:0006665//sphingolipid metabolic process;GO:0009308//amine metabolic process	gi|194034586|ref|XP_001925948.1|/1.04317e-174/PREDICTED: 3-ketodihydrosphingosine reductase-like [Sus scrofa]
gnl|UG|Ssc#S55327359	2	0.58	4	1.14	9	2.7	"Sus scrofa mRNA, clone:OVR010004C06, expressed in ovary /gb=AK347290 /gi=288576695 /ug=Ssc.25107 /len=2019"	-	-	-	gi|297461224|ref|XP_001790687.2|/0/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S46878910	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa A kinase (PRKA) anchor protein 13 (AKAP13), mRNA /cds=p(219,4025) /gb=XM_001926474 /gi=311261200 /ug=Ssc.9731 /len=5954"	GO:0005626//insoluble fraction;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0060089;GO:0004690//cyclic nucleotide-dependent protein kinase activity	GO:0006917//induction of apoptosis;GO:0007264//small GTPase mediated signal transduction;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009966//regulation of signal transduction	gi|311261201|ref|XP_001926509.2|/0/PREDICTED: a-kinase anchor protein 13 [Sus scrofa]
gnl|UG|Ssc#S20116736	3	0.86	5	1.43	4	1.2	"Sus scrofa 90-kDa heat shock protein (HSP90AA1), mRNA /cds=p(25,2226) /gb=NM_213973 /gi=47522773 /ug=Ssc.12191 /len=2456"	GO:0000267//cell fraction;GO:0048770;GO:0005903//brush border;GO:0044421//extracellular region part;GO:0044459//plasma membrane part	GO:0032561;GO:0032557//pyrimidine ribonucleotide binding;GO:0032558//adenyl deoxyribonucleotide binding;GO:0019904//protein domain specific binding;GO:0042802//identical protein binding;GO:0032559;GO:0030234//enzyme regulator activity	GO:0006457//protein folding;GO:0051131//chaperone-mediated protein complex assembly;GO:0031328//positive regulation of cellular biosynthetic process;GO:0006612//protein targeting to membrane;GO:0048545//response to steroid hormone stimulus;GO:0044271//cellular nitrogen compound biosynthetic process;GO:0006970//response to osmotic stress;GO:0010591//regulation of lamellipodium assembly;GO:0045582//positive regulation of T cell differentiation;GO:0016477//cell migration	gi|47522774|ref|NP_999138.1|/0/heat shock protein HSP 90-alpha [Sus scrofa]
gnl|UG|Ssc#S58302285	2	0.58	3	0.86	2	0.6	"PREDICTED: Sus scrofa cytoplasmic FMR1-interacting protein 2-like (LOC100523290), mRNA /cds=p(89,3718) /gb=XM_003134114 /gi=311274036 /ug=Ssc.28162 /len=3934"	GO:0044459//plasma membrane part;GO:0005624//membrane fraction;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0012501//programmed cell death;GO:0007155//cell adhesion	gi|311274037|ref|XP_003134162.1|/0/PREDICTED: cytoplasmic FMR1-interacting protein 2-like [Sus scrofa]
gnl|UG|Ssc#S46880608	10	2.88	9	2.57	19	5.71	"PREDICTED: Sus scrofa microfibrillar-associated protein 1 (MFAP1), mRNA /cds=p(163,1482) /gb=XM_001928118 /gi=311244860 /ug=Ssc.4348 /len=2055"	GO:0043205//fibril	-	-	gi|26328395|dbj|BAC27936.1|/6.40597e-131/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S55322670	23	6.62	7	2	15	4.51	"Sus scrofa mRNA, clone:DCI010041B06, expressed in dendritic cells (immature) /gb=AK344413 /gi=288782202 /ug=Ssc.20966 /len=1889"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0032559;GO:0043169//cation binding;GO:0019206//nucleoside kinase activity	GO:0009168//purine ribonucleoside monophosphate biosynthetic process;GO:0046128;GO:0006796//phosphate metabolic process;GO:0009216//purine deoxyribonucleoside triphosphate biosynthetic process;GO:0009112;GO:0043101//purine-containing compound salvage;GO:0042098//T cell proliferation	gi|296472165|gb|DAA14280.1|/0/adenosine kinase [Bos taurus]
gnl|UG|Ssc#S46877630	107	30.81	203	58.03	74	22.24	"PREDICTED: Sus scrofa large subunit GTPase 1 homolog (S. cerevisiae) (LSG1), mRNA /cds=p(56,2014) /gb=XM_001928236 /gi=311269811 /ug=Ssc.5261 /len=2313"	GO:0016604//nuclear body	GO:0032561;GO:0003824//catalytic activity	GO:0006913//nucleocytoplasmic transport	gi|194041035|ref|XP_001928271.1|/0/PREDICTED: large subunit GTPase 1 homolog [Sus scrofa]
gnl|UG|Ssc#S43509714	124	35.7	458	130.92	101	30.35	"Sus scrofa activating transcription factor 6 beta (ATF6B), mRNA /cds=p(47,2143) /gb=NM_001123103 /gi=178056507 /ug=Ssc.16901 /len=2601"	-	-	-	-
gnl|UG|Ssc#S55323955	0	0	2	0.57	5	1.5	"Sus scrofa mRNA, clone:AMP010022H02, expressed in alveolar macrophages /gb=AK343706 /gi=288780917 /ug=Ssc.57052 /len=2221"	-	-	-	-
gnl|UG|Ssc#S35172217	489	140.79	223	63.74	531	159.58	"Sus scrofa mRNA, clone:ITT010028G01, expressed in intestine /gb=AK231276 /gi=115547618 /ug=Ssc.58372 /len=2644"	GO:0044424//intracellular part	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0006412//translation;GO:0009207	gi|208610021|ref|NP_001129149.1|/0/eukaryotic peptide chain release factor GTP-binding subunit ERF3A [Gallus gallus]
gnl|UG|Ssc#S35165645	9	2.59	0	0	5	1.5	"Sus scrofa mRNA, clone:LVRM10117D10, expressed in liver /gb=AK233290 /gi=115554081 /ug=Ssc.3331 /len=2957"	-	-	-	-
gnl|UG|Ssc#S23766475	3	0.86	0	0	2	0.6	"1124886 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN124094 /gi=59818373 /ug=Ssc.57016 /len=887"	GO:0031981//nuclear lumen	GO:0003729//mRNA binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0043566//structure-specific DNA binding	"GO:0006396//RNA processing;GO:0032897//negative regulation of viral transcription;GO:0048255//mRNA stabilization;GO:0006351//transcription, DNA-dependent"	gi|126328728|ref|XP_001364350.1|/2.46665e-113/PREDICTED: similar to TCR-alpha V segment II-43 isoform 1 [Monodelphis domestica]
gnl|UG|Ssc#S58307842	293	84.36	350	100.05	482	144.85	"PREDICTED: Sus scrofa 40S ribosomal protein S3a-like (LOC100155572), mRNA /cds=p(42,797) /gb=XM_003128553 /gi=311261012 /ug=Ssc.85162 /len=946"	GO:0015935//small ribosomal subunit;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0012502//induction of programmed cell death;GO:0006412//translation;GO:0019080;GO:0048869;GO:0031016//pancreas development	gi|194038919|ref|XP_001927019.1|/9.61537e-135/PREDICTED: 40S ribosomal protein S3a-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58307340	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa UDP-glucuronosyltransferase 2B31-like (LOC100511092), mRNA /cds=p(24,1616) /gb=XM_003129047 /gi=311262281 /ug=Ssc.82638 /len=1994"	GO:0042598//vesicular fraction;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0008194//UDP-glycosyltransferase activity;GO:0005501//retinoid binding	GO:0006629//lipid metabolic process	gi|311262282|ref|XP_003129095.1|/0/PREDICTED: UDP-glucuronosyltransferase 2B31-like [Sus scrofa]
gnl|UG|Ssc#S58315139	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa protein FAM135A-like (LOC100513127), mRNA /cds=p(405,4379) /gb=XM_003121274 /gi=311244097 /ug=Ssc.57302 /len=4379"	-	-	-	gi|311244098|ref|XP_003121322.1|/0/PREDICTED: protein FAM135A-like [Sus scrofa]
gnl|UG|Ssc#S58311169	30	8.64	63	18.01	17	5.11	"PREDICTED: Sus scrofa CCAAT/enhancer binding protein (C/EBP), zeta (CEBPZ), mRNA /cds=p(1,3150) /gb=XM_003125229 /gi=311252812 /ug=Ssc.60745 /len=3331"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|311252813|ref|XP_003125277.1|/0/PREDICTED: CCAAT/enhancer-binding protein zeta-like [Sus scrofa]
gnl|UG|Ssc#S40353888	138	39.73	249	71.18	120	36.06	"rnje09c_i16.y1 nje Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW448495 /gi=182771804 /ug=Ssc.56585 /len=463"	GO:0015935//small ribosomal subunit;GO:0031981//nuclear lumen	GO:0003723//RNA binding;GO:0005198//structural molecule activity;GO:0003824//catalytic activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0008380//RNA splicing	gi|149634482|ref|XP_001510702.1|/2.5198e-45/PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
gnl|UG|Ssc#S18359073	27	7.77	29	8.29	35	10.52	"915000 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK454514 /gi=40801728 /ug=Ssc.1324 /len=825"	-	-	-	-
gnl|UG|Ssc#S46914949	0	0	0	0	0	0	"Sus scrofa stromal interaction molecule 1 (STIM1) mRNA, complete cds /cds=p(1,2058) /gb=EU038298 /gi=157929327 /ug=Ssc.28568 /len=2058"	GO:0015630//microtubule cytoskeleton;GO:0016021//integral to membrane;GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0008017//microtubule binding;GO:0046872//metal ion binding	GO:0032236//positive regulation of calcium ion transport via store-operated calcium channel activity;GO:0001775//cell activation;GO:0009593//detection of chemical stimulus;GO:0007599//hemostasis	gi|195972993|ref|NP_001124446.1|/0/stromal interaction molecule 1 [Sus scrofa]
gnl|UG|Ssc#S6041614	2	0.58	0	0	2	0.6	"371286 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BI343215 /gi=15036504 /ti=470948972 /ug=Ssc.80853 /len=545"	-	-	-	gi|73959331|ref|XP_547242.2|/2.85975e-75/PREDICTED: similar to ataxin 7-like 2 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S20116725	7	2.02	0	0	2	0.6	"Sus scrofa potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 (KCNN3), mRNA /cds=p(327,2501) /gb=NM_213985 /gi=47522795 /ug=Ssc.5485 /len=2546"	GO:0031224//intrinsic to membrane	GO:0005515//protein binding;GO:0015269//calcium-activated potassium channel activity	GO:0034220//ion transmembrane transport;GO:0030001//metal ion transport	gi|47522796|ref|NP_999150.1|/0/small conductance calcium-activated potassium channel protein 3 [Sus scrofa]
gnl|UG|Ssc#S55323825	19	5.47	8	2.29	10	3.01	"Sus scrofa mRNA, clone:AMP010061C09, expressed in alveolar macrophages /gb=AK343836 /gi=288781047 /ug=Ssc.3416 /len=2338"	-	-	-	gi|311256341|ref|XP_001928737.2|/0/PREDICTED: uncharacterized protein C12orf4 homolog [Sus scrofa]
gnl|UG|Ssc#S49953826	43	12.38	5	1.43	27	8.11	"Sus scrofa acyl-CoA synthetase long-chain family member 3 (ACSL3) mRNA, complete cds /cds=p(226,2388) /gb=FJ436389 /gi=217314892 /ug=Ssc.2176 /len=2600"	GO:0031224//intrinsic to membrane;GO:0031966//mitochondrial membrane;GO:0044439;GO:0042598//vesicular fraction	GO:0016405//CoA-ligase activity;GO:0015645//fatty acid ligase activity;GO:0032559;GO:0016408	GO:0007417//central nervous system development;GO:0006631//fatty acid metabolic process;GO:0035336//long-chain fatty-acyl-CoA metabolic process;GO:0031667//response to nutrient levels;GO:0006641//triglyceride metabolic process;GO:0010033//response to organic substance	gi|219521964|ref|NP_001137170.1|/0/long-chain-fatty-acid--CoA ligase 3 [Sus scrofa]
gnl|UG|Ssc#S35170923	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10068E02, expressed in ovary /gb=AK235319 /gi=115548916 /ug=Ssc.48202 /len=1975"	-	-	-	gi|148645276|gb|ABR01162.1|/2.09055e-14/endonuclease/reverse transcriptase [Sus scrofa]
gnl|UG|Ssc#S55266791	0	0	0	0	0	0	"FS669236 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10070H04 5', mRNA sequence /clone=HTMT10070H04 /clone_end=5' /gb=FS669236 /gi=288265088 /ug=Ssc.6987 /len=825"	-	-	-	-
gnl|UG|Ssc#S58310423	0	0	6	1.72	0	0	"PREDICTED: Sus scrofa sulfotransferase 4A1-like (LOC100523243), partial mRNA /cds=p(60,953) /gb=XM_003125977 /gi=311254958 /ug=Ssc.83224 /len=953"	-	-	-	"gi|311254959|ref|XP_003126025.1|/4.33557e-175/PREDICTED: sulfotransferase 4A1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S35173312	4	1.15	2	0.57	3	0.9	"Sus scrofa mRNA, clone:OVR010047D11, expressed in ovary /gb=AK234361 /gi=115546523 /ug=Ssc.8626 /len=1624"	GO:0005783//endoplasmic reticulum	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0009207;GO:0048193//Golgi vesicle transport;GO:0015031//protein transport	gi|72535188|ref|NP_001026956.1|/9.35992e-111/GTP-binding protein SAR1a [Sus scrofa]
gnl|UG|Ssc#S46876604	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa phosphatidylinositol transfer protein, beta (PITPNB), mRNA /cds=p(77,892) /gb=XM_001927781 /gi=311270842 /ug=Ssc.5369 /len=2899"	GO:0043231//intracellular membrane-bounded organelle	GO:0005548//phospholipid transporter activity;GO:0005488//binding	GO:0043009//chordate embryonic development;GO:0006869//lipid transport;GO:0044238//primary metabolic process	gi|118151166|ref|NP_001071508.1|/2.57362e-160/phosphatidylinositol transfer protein beta isoform [Bos taurus]
gnl|UG|Ssc#S58304763	6	1.73	0	0	0	0	"PREDICTED: Sus scrofa serine/arginine-rich splicing factor 1-like (LOC100512435), mRNA /cds=p(119,865) /gb=XM_003131634 /gi=311267672 /ug=Ssc.94961 /len=3318"	GO:0005681//spliceosomal complex;GO:0005654//nucleoplasm	GO:0003676//nucleic acid binding;GO:0019904//protein domain specific binding	"GO:0006941//striated muscle contraction;GO:0043009//chordate embryonic development;GO:0000245//spliceosome assembly;GO:0006405//RNA export from nucleus;GO:0006353//transcription termination, DNA-dependent"	"gi|73966554|ref|XP_853057.1|/1.71922e-98/PREDICTED: similar to splicing factor, arginine/serine-rich 1 (ASF/SF2) isoform 1 [Canis familiaris]"
gnl|UG|Ssc#S23770014	76	21.88	27	7.72	30	9.02	"1141651 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN127633 /gi=59821912 /ug=Ssc.5525 /len=857"	-	-	-	-
gnl|UG|Ssc#S58313052	120	34.55	28	8	170	51.09	"PREDICTED: Sus scrofa leydig cell tumor 10 kDa protein homolog (LOC100526037), mRNA /cds=p(46,342) /gb=XM_003123347 /gi=311248955 /ug=Ssc.54571 /len=978"	-	-	-	gi|311248956|ref|XP_003123395.1|/8.93321e-30/PREDICTED: leydig cell tumor 10 kDa protein homolog [Sus scrofa]
gnl|UG|Ssc#S35174071	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVR010026B03, expressed in ovary /gb=AK234197 /gi=115545764 /ug=Ssc.4395 /len=2086"	GO:0043231//intracellular membrane-bounded organelle	GO:0008641//small protein activating enzyme activity;GO:0046983//protein dimerization activity;GO:0030234//enzyme regulator activity	GO:0032446//protein modification by small protein conjugation	gi|311257796|ref|XP_003127291.1|/0/PREDICTED: SUMO-activating enzyme subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S58312947	8	2.3	0	0	5	1.5	"PREDICTED: Sus scrofa protein Wiz-like (LOC100524241), mRNA /cds=p(1,2358) /gb=XM_003123456 /gi=311249168 /ug=Ssc.49355 /len=3210"	-	-	-	gi|311249169|ref|XP_003123504.1|/0/PREDICTED: protein Wiz-like [Sus scrofa]
gnl|UG|Ssc#S55324635	5	1.44	0	0	0	0	"Sus scrofa mRNA, clone:ADR010063D03, expressed in adrenal gland /gb=AK343421 /gi=288780237 /ug=Ssc.30751 /len=2822"	GO:0031461//cullin-RING ubiquitin ligase complex;GO:0043231//intracellular membrane-bounded organelle	-	GO:0032446//protein modification by small protein conjugation	gi|311261259|ref|XP_001924289.2|/3.13142e-179/PREDICTED: DDB1- and CUL4-associated factor 5-like [Sus scrofa]
gnl|UG|Ssc#S40590630	0	0	3	0.86	0	0	"rvin027_o8.y1 vin Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW677343 /gi=183054897 /ug=Ssc.63049 /len=611"	-	-	-	-
gnl|UG|Ssc#S58312511	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase MARCH3-like (LOC100513526), mRNA /cds=p(275,1036) /gb=XM_003123883 /gi=311250058 /ug=Ssc.4114 /len=1744"	GO:0005769//early endosome;GO:0000323//lytic vacuole;GO:0012506//vesicle membrane;GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding;GO:0003824//catalytic activity	GO:0016192//vesicle-mediated transport	gi|311250059|ref|XP_003123931.1|/1.36841e-147/PREDICTED: e3 ubiquitin-protein ligase MARCH3-like [Sus scrofa]
gnl|UG|Ssc#S17512121	3	0.86	7	2	2	0.6	"BX666964 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0027.b.15 3prim, mRNA sequence /clone=scac0027.b.15 /clone_end=3' /gb=BX666964 /gi=90237682 /ug=Ssc.56814 /len=785"	GO:0043231//intracellular membrane-bounded organelle;GO:0005865//striated muscle thin filament	GO:0008092//cytoskeletal protein binding	GO:0006941//striated muscle contraction	"gi|73853890|ref|NP_001027530.1|/3.10222e-82/troponin I, fast skeletal muscle [Sus scrofa]"
gnl|UG|Ssc#S40443410	0	0	3	0.86	0	0	"rret06_p21.y1 ret Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW538016 /gi=183116687 /ug=Ssc.60857 /len=629"	-	-	-	-
gnl|UG|Ssc#S55323201	30	8.64	21	6	65	19.53	"Sus scrofa mRNA, clone:SPL010088H04, expressed in spleen /gb=AK350541 /gi=288781671 /ug=Ssc.25763 /len=1638"	GO:0030286//dynein complex	GO:0017111//nucleoside-triphosphatase activity;GO:0032559	GO:0008088//axon cargo transport	"gi|296478087|gb|DAA20202.1|/0/dynein, cytoplasmic, light intermediate polypeptide 2-like [Bos taurus]"
gnl|UG|Ssc#S58311976	10	2.88	18	5.15	8	2.4	"PREDICTED: Sus scrofa general transcription factor IIi (GTF2I), mRNA /cds=p(384,3383) /gb=XM_003124425 /gi=311251154 /ug=Ssc.1650 /len=4551"	GO:0031981//nuclear lumen;GO:0044297//cell body	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0019901//protein kinase binding;GO:0003702//RNA polymerase II transcription factor activity	"GO:0006352//transcription initiation, DNA-dependent;GO:0023052//signaling;GO:0007275//multicellular organismal development;GO:0051480//cytosolic calcium ion homeostasis"	gi|311251155|ref|XP_003124473.1|/0/PREDICTED: general transcription factor II-I-like [Sus scrofa]
gnl|UG|Ssc#S23766637	330	95.01	128	36.59	106	31.86	"1125113 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN124256 /gi=59818535 /ug=Ssc.70285 /len=820"	-	-	-	-
gnl|UG|Ssc#S58301439	68	19.58	60	17.15	69	20.74	"PREDICTED: Sus scrofa histone-binding protein RBBP7-like, transcript variant 1 (LOC100519001), mRNA /cds=p(311,1588) /gb=XM_003134956 /gi=311275994 /ug=Ssc.10966 /len=1990"	GO:0000118//histone deacetylase complex;GO:0031519//PcG protein complex	GO:0030528//transcription regulator activity;GO:0005488//binding	GO:0010286//heat acclimation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006259//DNA metabolic process;GO:0016049//cell growth;GO:0043486//histone exchange;GO:0032501//multicellular organismal process	gi|74006529|ref|XP_857851.1|/0/PREDICTED: similar to retinoblastoma binding protein 7 isoform 4 [Canis familiaris]
gnl|UG|Ssc#S31105828	3	0.86	3	0.86	4	1.2	"1513445 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY409666 /gi=87210969 /ug=Ssc.27560 /len=753"	-	-	-	-
gnl|UG|Ssc#S35167464	1159	333.68	1218	348.16	838	251.84	"Sus scrofa mRNA, clone:AMP010012A11, expressed in alveolar macrophage /gb=AK230584 /gi=115552275 /ug=Ssc.6719 /len=2318"	GO:0005783//endoplasmic reticulum;GO:0030141//stored secretory granule;GO:0012505//endomembrane system;GO:0043235//receptor complex;GO:0044425//membrane part;GO:0005743//mitochondrial inner membrane;GO:0005768//endosome;GO:0044421//extracellular region part	GO:0017046//peptide hormone binding;GO:0032559;GO:0043566//structure-specific DNA binding;GO:0017111//nucleoside-triphosphatase activity;GO:0043565//sequence-specific DNA binding;GO:0046983//protein dimerization activity;GO:0019899//enzyme binding	GO:0043623//cellular protein complex assembly;GO:0045767//regulation of anti-apoptosis;GO:0032481//positive regulation of type I interferon production;GO:0009207;GO:0050863//regulation of T cell activation;GO:0045190//isotype switching;GO:0000302//response to reactive oxygen species;GO:0002367//cytokine production involved in immune response;GO:0002237//response to molecule of bacterial origin;GO:0051084//'de novo' posttranslational protein folding;GO:0048545//response to steroid hormone stimulus;GO:0002224//toll-like receptor signaling pathway;GO:0002696;GO:0002424;GO:0009593//detection of chemical stimulus;GO:0031647//regulation of protein stability;GO:0014073	"gi|194044029|ref|XP_001928634.1|/0/PREDICTED: 60 kDa heat shock protein, mitochondrial isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S55320187	0	0	3	0.86	2	0.6	"Sus scrofa mRNA, clone:THY010085C03, expressed in thymus /gb=AK351776 /gi=288784685 /ug=Ssc.11423 /len=1957"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	-	GO:0046519	gi|149730988|ref|XP_001502006.1|/7.97677e-75/PREDICTED: similar to ORM1-like protein 1 (Adoplin-1) [Equus caballus]
gnl|UG|Ssc#S18266790	3	0.86	0	0	4	1.2	"BP163281 full-length enriched swine cDNA library, adult thymus Sus scrofa cDNA clone THY010202D02 5', mRNA sequence /clone=THY010202D02 /clone_end=5' /gb=BP163281 /gi=40412754 /ug=Ssc.48432 /len=872"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0034062//RNA polymerase activity;GO:0001882//nucleoside binding;GO:0016301//kinase activity	"GO:0006289//nucleotide-excision repair;GO:0000377;GO:0006352//transcription initiation, DNA-dependent;GO:0006397//mRNA processing;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|73975069|ref|XP_860865.1|/6.527e-134/PREDICTED: similar to DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II subunit 2) (RPB2) isoform 11 [Canis familiaris]
gnl|UG|Ssc#S58305082	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa N-ethylmaleimide-sensitive factor (NSF), mRNA /cds=p(122,2380) /gb=XM_003131315 /gi=311267017 /ug=Ssc.22051 /len=3997"	GO:0030425//dendrite;GO:0044431//Golgi apparatus part	"GO:0043169//cation binding;GO:0005083//small GTPase regulator activity;GO:0004175//endopeptidase activity;GO:0042623//ATPase activity, coupled;GO:0000149//SNARE binding;GO:0032559"	GO:0007267//cell-cell signaling;GO:0006887//exocytosis;GO:0019538//protein metabolic process;GO:0009207;GO:0030001//metal ion transport	gi|311267018|ref|XP_003131363.1|/0/PREDICTED: vesicle-fusing ATPase-like [Sus scrofa]
gnl|UG|Ssc#S55325206	2	0.58	2	0.57	0	0	"Sus scrofa mRNA, clone:ADR010010H10, expressed in adrenal gland /gb=AK343251 /gi=288779666 /ug=Ssc.19702 /len=3184"	GO:0031090//organelle membrane;GO:0005626//insoluble fraction;GO:0043235//receptor complex;GO:0044444//cytoplasmic part	GO:0019787//small conjugating protein ligase activity;GO:0030528//transcription regulator activity;GO:0005126//cytokine receptor binding;GO:0000166//nucleotide binding;GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0042802//identical protein binding;GO:0046983//protein dimerization activity	GO:0006461//protein complex assembly;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0008284//positive regulation of cell proliferation;GO:0051091//positive regulation of transcription factor activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0043406//positive regulation of MAP kinase activity;GO:0043433//negative regulation of transcription factor activity;GO:0032583//regulation of gene-specific transcription;GO:0019221//cytokine-mediated signaling pathway;GO:0001666//response to hypoxia;GO:0032446//protein modification by small protein conjugation;GO:0043066//negative regulation of apoptosis;GO:0002224//toll-like receptor signaling pathway;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0010874//regulation of cholesterol efflux;GO:0000165//MAPKKK cascade;GO:0032496//response to lipopolysaccharide	gi|311277205|ref|XP_003135538.1|/0/PREDICTED: interleukin-1 receptor-associated kinase 1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46879526	17	4.89	12	3.43	7	2.1	"PREDICTED: Sus scrofa WW domain containing E3 ubiquitin protein ligase 1 (WWP1), mRNA /cds=p(195,2966) /gb=XM_001927574 /gi=311253663 /ug=Ssc.1680 /len=8038"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0019787//small conjugating protein ligase activity;GO:0005488//binding	"GO:0030260//entry into host cell;GO:0006355//regulation of transcription, DNA-dependent;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0023052//signaling;GO:0016567//protein ubiquitination;GO:0030323//respiratory tube development;GO:0007399//nervous system development;GO:0030098//lymphocyte differentiation"	gi|194037095|ref|XP_001927609.1|/0/PREDICTED: WW domain containing E3 ubiquitin protein ligase 1 [Sus scrofa]
gnl|UG|Ssc#S46880144	0	0	0	0	0	0	"PREDICTED: Sus scrofa WD repeat-containing protein 63 (LOC100157444), mRNA /cds=p(357,3035) /gb=XM_001928466 /gi=194035809 /ug=Ssc.13218 /len=3182"	-	-	-	gi|194035810|ref|XP_001928501.1|/0/PREDICTED: WD repeat-containing protein 63 [Sus scrofa]
gnl|UG|Ssc#S58311064	20	5.76	4	1.14	5	1.5	"PREDICTED: Sus scrofa intersectin 2 (ITSN2), mRNA /cds=p(23,1333) /gb=XM_003125360 /gi=311253023 /ug=Ssc.29631 /len=2097"	GO:0044424//intracellular part	"GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0046872//metal ion binding;GO:0030674//protein binding, bridging"	GO:0007266//Rho protein signal transduction;GO:0016192//vesicle-mediated transport	gi|296482348|gb|DAA24463.1|/0/intersectin-1-like [Bos taurus]
gnl|UG|Ssc#S55834706	0	0	0	0	0	0	"Sus scrofa nuclear receptor subfamily 4 group A member 2 (NR4A2) mRNA, complete cds /cds=p(61,1857) /gb=EU717838 /gi=198401844 /ug=Ssc.4643 /len=2254"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0004879//ligand-dependent nuclear receptor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0003677//DNA binding	GO:0014075//response to amine stimulus;GO:0048469//cell maturation;GO:0007626//locomotory behavior;GO:0009755//hormone-mediated signaling pathway;GO:0042069//regulation of catecholamine metabolic process;GO:0042417//dopamine metabolic process;GO:0051239;GO:0007154//cell communication;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0044093;GO:0006950//response to stress;GO:0009636//response to toxin;GO:0021538//epithalamus development;GO:0016477//cell migration;GO:0043066//negative regulation of apoptosis;GO:0021955//central nervous system neuron axonogenesis	gi|298231151|ref|NP_001177205.1|/0/nuclear receptor subfamily 4 group A member 2 [Sus scrofa]
gnl|UG|Ssc#S18385630	3	0.86	2	0.57	3	0.9	"936897 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK465755 /gi=40837032 /ug=Ssc.93887 /len=855"	GO:0005813//centrosome	-	-	gi|297671159|ref|XP_002813712.1|/2.87608e-39/PREDICTED: WD repeat-containing protein 51A-like isoform 3 [Pongo abelii]
gnl|UG|Ssc#S58301314	49	14.11	6	1.72	18	5.41	"PREDICTED: Sus scrofa proteolipid protein 2-like (LOC100512511), mRNA /cds=p(161,619) /gb=XM_003135081 /gi=311276274 /ug=Ssc.38558 /len=996"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0022891//substrate-specific transmembrane transporter activity;GO:0019955//cytokine binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0006811//ion transport;GO:0042221//response to chemical stimulus	gi|311276275|ref|XP_003135129.1|/1.49244e-72/PREDICTED: proteolipid protein 2-like [Sus scrofa]
gnl|UG|Ssc#S23767637	7	2.02	12	3.43	18	5.41	"1139089 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN125256 /gi=59819535 /ug=Ssc.2848 /len=878"	-	-	-	-
gnl|UG|Ssc#S58313779	4	1.15	4	1.14	0	0	"PREDICTED: Sus scrofa u6 snRNA-specific terminal uridylyltransferase 1-like (LOC100516127), mRNA /cds=p(1,2781) /gb=XM_003122623 /gi=311247486 /ug=Ssc.26589 /len=2822"	GO:0016604//nuclear body;GO:0005849//mRNA cleavage factor complex	GO:0003729//mRNA binding;GO:0046914//transition metal ion binding;GO:0070569;GO:0070566//adenylyltransferase activity;GO:0005515//protein binding;GO:0032559	GO:0016073;GO:0031124//mRNA 3'-end processing;GO:0000956//nuclear-transcribed mRNA catabolic process	gi|311247487|ref|XP_003122671.1|/0/PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-specific terminal uridylyltransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S55318257	57	16.41	142	40.59	88	26.45	"Sus scrofa mRNA, clone:ITT010030G06, expressed in small intestine /gb=AK344988 /gi=288806649 /ug=Ssc.54427 /len=2712"	GO:0031224//intrinsic to membrane	-	-	gi|311257362|ref|XP_003127082.1|/0/PREDICTED: GRAM domain-containing protein 1A-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55322690	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:DCI010033D08, expressed in dendritic cells (immature) /gb=AK344393 /gi=288782182 /ug=Ssc.5495 /len=1718"	GO:0031981//nuclear lumen;GO:0016585//chromatin remodeling complex;GO:0044459//plasma membrane part;GO:0005875//microtubule associated complex;GO:0005874//microtubule;GO:0016234//inclusion body;GO:0044444//cytoplasmic part	GO:0043130//ubiquitin binding;GO:0032403//protein complex binding;GO:0016564//transcription repressor activity;GO:0015631//tubulin binding;GO:0017136//NAD-dependent histone deacetylase activity;GO:0046914//transition metal ion binding;GO:0019899//enzyme binding;GO:0031072//heat shock protein binding	GO:0034614//cellular response to reactive oxygen species;GO:0006915//apoptosis;GO:0006914//autophagy;GO:0006325//chromatin organization;GO:0010557;GO:0016567//protein ubiquitination;GO:0070841;GO:0030162//regulation of proteolysis;GO:0033143//regulation of steroid hormone receptor signaling pathway;GO:0010033//response to organic substance;GO:0010310//regulation of hydrogen peroxide metabolic process;GO:0006476//protein deacetylation;GO:0031334//positive regulation of protein complex assembly;GO:0032886//regulation of microtubule-based process;GO:0010631//epithelial cell migration;GO:0043086//negative regulation of catalytic activity;GO:0070843;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0051640//organelle localization;GO:0007019//microtubule depolymerization	gi|301764785|ref|XP_002917832.1|/1.31381e-102/PREDICTED: histone deacetylase 6-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S26726413	53	15.26	32	9.15	55	16.53	"AJ962497 KN404_2 Sus scrofa cDNA clone C0007751g08 3', mRNA sequence /clone=C0007751g08 /clone_end=3' /gb=AJ962497 /gi=74379313 /ug=Ssc.43653 /len=669"	-	-	-	-
gnl|UG|Ssc#S35167991	60	17.27	48	13.72	41	12.32	"Sus scrofa mRNA, clone:OVRM10027H06, expressed in ovary /gb=AK234898 /gi=115551699 /ug=Ssc.4138 /len=1164"	GO:0022624;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0061135;GO:0048037//cofactor binding;GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0016787//hydrolase activity;GO:0016641//oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor"	"GO:0010952//positive regulation of peptidase activity;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|6755214|ref|NP_035322.1|/1.36345e-139/proteasome activator complex subunit 3 [Mus musculus]
gnl|UG|Ssc#S58314504	7	2.02	5	1.43	0	0	"PREDICTED: Sus scrofa zinc finger protein basonuclin-2-like (LOC100513064), mRNA /cds=p(45,3302) /gb=XM_003121898 /gi=311245750 /ug=Ssc.39293 /len=3729"	GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|311245751|ref|XP_003121946.1|/0/PREDICTED: zinc finger protein basonuclin-2-like [Sus scrofa]
gnl|UG|Ssc#S38675442	16	4.61	0	0	18	5.41	"Sus scrofa AP3B1 mRNA for adaptor-related protein complex 3, beta-1 subunit, complete cds /cds=p(45,3317) /gb=AB271937 /gi=146741313 /ug=Ssc.4666 /len=3393"	GO:0043234//protein complex;GO:0030136//clathrin-coated vesicle	GO:0022892;GO:0019902//phosphatase binding	GO:0007599//hemostasis;GO:0048753//pigment granule organization;GO:0006623//protein targeting to vacuole;GO:0019884//antigen processing and presentation of exogenous antigen;GO:0016192//vesicle-mediated transport;GO:0046638//positive regulation of alpha-beta T cell differentiation	gi|148747342|ref|NP_001092055.1|/0/AP-3 complex subunit beta-1 [Sus scrofa]
gnl|UG|Ssc#S31106569	0	0	0	0	9	2.7	"1514404 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY410407 /gi=87211710 /ug=Ssc.53946 /len=607"	-	-	-	gi|126291198|ref|XP_001371677.1|/3.42824e-28/PREDICTED: similar to splicing factor isoform 2 [Monodelphis domestica]
gnl|UG|Ssc#S35174292	49	14.11	14	4	22	6.61	"Sus scrofa mRNA, clone:AMP010021H04, expressed in alveolar macrophage /gb=AK230658 /gi=115545543 /ug=Ssc.55166 /len=2045"	GO:0070822//Sin3-type complex;GO:0044444//cytoplasmic part;GO:0044297//cell body	GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0016564//transcription repressor activity;GO:0003676//nucleic acid binding;GO:0017136//NAD-dependent histone deacetylase activity;GO:0019899//enzyme binding	GO:0030326//embryonic limb morphogenesis;GO:0051704;GO:0010557;GO:0045687//positive regulation of glial cell differentiation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0021543//pallium development;GO:0051726//regulation of cell cycle;GO:0042476//odontogenesis;GO:0008544//epidermis development;GO:0006979//response to oxidative stress;GO:0010830;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0016575//histone deacetylation;GO:0007599//hemostasis;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0043066//negative regulation of apoptosis;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0008283//cell proliferation;GO:0060788;GO:0032897//negative regulation of viral transcription	gi|114555335|ref|XP_001162018.1|/0/PREDICTED: similar to histone deacetylase HD1 isoform 2 [Pan troglodytes]
gnl|UG|Ssc#S55322401	24	6.91	15	4.29	23	6.91	"Sus scrofa mRNA, clone:TCH010062H05, expressed in trachea /gb=AK350943 /gi=288782471 /ug=Ssc.11307 /len=2554"	GO:0044432//endoplasmic reticulum part;GO:0016020//membrane	GO:0016740//transferase activity	GO:0016337//cell-cell adhesion;GO:0008610//lipid biosynthetic process	gi|301758784|ref|XP_002915272.1|/0/PREDICTED: glycosyltransferase 25 family member 3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55309742	2	0.58	0	0	0	0	"FS686644 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRT10003G04 5', mRNA sequence /clone=OVRT10003G04 /clone_end=5' /gb=FS686644 /gi=288243295 /ug=Ssc.78341 /len=543"	-	-	-	"gi|119580776|gb|EAW60372.1|/2.96455e-08/trinucleotide repeat containing 6B, isoform CRA_d [Homo sapiens]"
gnl|UG|Ssc#S35173228	109	31.38	47	13.43	117	35.16	"Sus scrofa mRNA, clone:OVR010063A06, expressed in ovary /gb=AK234445 /gi=115546607 /ug=Ssc.4908 /len=1221"	GO:0000314//organellar small ribosomal subunit;GO:0043231//intracellular membrane-bounded organelle	GO:0005198//structural molecule activity	GO:0010467//gene expression;GO:0006518//peptide metabolic process;GO:0006974//response to DNA damage stimulus	"gi|311245645|ref|XP_003121907.1|/9.59026e-91/PREDICTED: 28S ribosomal protein S11, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S58309603	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa dysbindin domain-containing protein 1-like (LOC100524199), mRNA /cds=p(88,564) /gb=XM_003126800 /gi=311256861 /ug=Ssc.55828 /len=1628"	GO:0044424//intracellular part	-	-	gi|311256862|ref|XP_003126848.1|/1.36771e-85/PREDICTED: dysbindin domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58306209	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa aryl hydrocarbon receptor (AHR), partial mRNA /cds=p(1,1068) /gb=XM_003130189 /gi=311264583 /ug=Ssc.69837 /len=1068"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0034751	GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0031072//heat shock protein binding;GO:0043565//sequence-specific DNA binding;GO:0004872//receptor activity	GO:0012501//programmed cell death;GO:0003006//developmental process involved in reproduction;GO:0001944//vasculature development;GO:0043627//response to estrogen stimulus;GO:0022602//ovulation cycle process;GO:0045898//regulation of RNA polymerase II transcriptional preinitiation complex assembly;GO:0048513//organ development;GO:0001655//urogenital system development;GO:0051384//response to glucocorticoid stimulus;GO:0023052//signaling;GO:0042100//B cell proliferation	"gi|311264584|ref|XP_003130237.1|/0/PREDICTED: aryl hydrocarbon receptor, partial [Sus scrofa]"
gnl|UG|Ssc#S48368244	6	1.73	5	1.43	2	0.6	"Sus scrofa APEX nuclease 1 (APEX1) mRNA, complete cds /cds=p(133,1089) /gb=FJ358603 /gi=210062865 /ug=Ssc.7943 /len=1392"	GO:0005815//microtubule organizing center;GO:0016604//nuclear body;GO:0043234//protein complex;GO:0030529//ribonucleoprotein complex	"GO:0016835//carbon-oxygen lyase activity;GO:0042578//phosphoric ester hydrolase activity;GO:0016891//endoribonuclease activity, producing 5'-phosphomonoesters;GO:0003712//transcription cofactor activity;GO:0004527//exonuclease activity;GO:0043169//cation binding;GO:0003677//DNA binding;GO:0004520//endodeoxyribonuclease activity;GO:0003682//chromatin binding;GO:0019104//DNA N-glycosylase activity;GO:0008134//transcription factor binding"	"GO:0006351//transcription, DNA-dependent;GO:0014909//smooth muscle cell migration;GO:0034614//cellular response to reactive oxygen species;GO:0019725//cellular homeostasis;GO:0006282//regulation of DNA repair;GO:0007090//regulation of S phase of mitotic cell cycle;GO:0045767//regulation of anti-apoptosis;GO:0016071//mRNA metabolic process;GO:0009725//response to hormone stimulus;GO:0032502//developmental process"	gi|213021237|ref|NP_001132943.1|/2.34282e-168/DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gnl|UG|Ssc#S58304026	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa MMP37-like protein, mitochondrial-like, transcript variant 2 (LOC100524902), mRNA /cds=p(261,1259) /gb=XM_003132371 /gi=311269283 /ug=Ssc.12403 /len=1367"	GO:0005743//mitochondrial inner membrane	-	GO:0006626//protein targeting to mitochondrion	"gi|311269284|ref|XP_003132419.1|/0/PREDICTED: MMP37-like protein, mitochondrial-like isoform 2 [Sus scrofa]"
gnl|UG|Ssc#S58311990	0	0	0	0	0	0	"PREDICTED: Sus scrofa transducin (beta)-like 2, transcript variant 1 (TBL2), mRNA /cds=p(91,1422) /gb=XM_003124405 /gi=311251126 /ug=Ssc.6081 /len=1517"	-	-	-	gi|311251127|ref|XP_003124453.1|/0/PREDICTED: transducin beta-like protein 2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58311321	8	2.3	8	2.29	20	6.01	"PREDICTED: Sus scrofa nuclear nucleic acid-binding protein C1D-like, transcript variant 1 (LOC100515656), mRNA /cds=p(263,688) /gb=XM_003125076 /gi=311252500 /ug=Ssc.5472 /len=2571"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0004871//signal transducer activity;GO:0005102//receptor binding	"GO:0012501//programmed cell death;GO:0006355//regulation of transcription, DNA-dependent;GO:0042254//ribosome biogenesis"	gi|311252501|ref|XP_003125124.1|/3.21086e-74/PREDICTED: nuclear nucleic acid-binding protein C1D-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58311291	4	1.15	2	0.57	2	0.6	"PREDICTED: Sus scrofa peroxisomal membrane protein PEX13-like (LOC100523180), mRNA /cds=p(33,1244) /gb=XM_003125106 /gi=311252562 /ug=Ssc.24974 /len=2233"	GO:0005626//insoluble fraction;GO:0031231	GO:0005048//signal sequence binding	GO:0016477//cell migration;GO:0021987//cerebral cortex development;GO:0016558//protein import into peroxisome matrix;GO:0009062//fatty acid catabolic process;GO:0007017//microtubule-based process;GO:0007631//feeding behavior	gi|311252563|ref|XP_003125154.1|/0/PREDICTED: peroxisomal membrane protein PEX13-like [Sus scrofa]
gnl|UG|Ssc#S26732430	2	0.58	3	0.86	7	2.1	"AJ943412 CSEQRAN17 Sus scrofa cDNA clone C0007306k21 5', mRNA sequence /clone=C0007306k21 /clone_end=5' /gb=AJ943412 /gi=74360154 /ug=Ssc.3063 /len=689"	-	-	-	-
gnl|UG|Ssc#S46878746	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa neogenin 1 (NEO1), partial mRNA /cds=p(1,1015) /gb=XM_001926092 /gi=311260836 /ug=Ssc.80466 /len=1015"	GO:0016021//integral to membrane;GO:0031981//nuclear lumen	-	GO:0048856//anatomical structure development;GO:0006935//chemotaxis;GO:0045597//positive regulation of cell differentiation	"gi|311260837|ref|XP_001926127.2|/2.45435e-171/PREDICTED: neogenin, partial [Sus scrofa]"
gnl|UG|Ssc#S58311861	12	3.45	0	0	6	1.8	"PREDICTED: Sus scrofa retinoblastoma binding protein 6, transcript variant 1 (RBBP6), mRNA /cds=p(463,5847) /gb=XM_003124540 /gi=311251387 /ug=Ssc.10767 /len=6268"	GO:0043232;GO:0005634//nucleus	GO:0016874//ligase activity;GO:0046872//metal ion binding	-	gi|311251390|ref|XP_003124589.1|/0/PREDICTED: e3 ubiquitin-protein ligase RBBP6-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55320855	336	96.74	212	60.6	145	43.58	"Sus scrofa mRNA, clone:LNG010077A05, expressed in lung /gb=AK345632 /gi=288784017 /ug=Ssc.149 /len=1146"	GO:0043231//intracellular membrane-bounded organelle	GO:0004067//asparaginase activity	GO:0007626//locomotory behavior;GO:0007611//learning or memory	gi|55741471|ref|NP_999207.1|/1.77881e-176/protein N-terminal asparagine amidohydrolase [Sus scrofa]
gnl|UG|Ssc#S58305006	21	6.05	16	4.57	23	6.91	"PREDICTED: Sus scrofa max-like protein X-like, transcript variant 1 (LOC100519270), mRNA /cds=p(20,916) /gb=XM_003131385 /gi=311267170 /ug=Ssc.14 /len=2086"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0042802//identical protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity	"GO:0009893//positive regulation of metabolic process;GO:0006355//regulation of transcription, DNA-dependent;GO:0015980//energy derivation by oxidation of organic compounds;GO:0051169//nuclear transport"	gi|311267171|ref|XP_003131433.1|/7.91812e-153/PREDICTED: max-like protein X-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55322027	2	0.58	0	0	4	1.2	"Sus scrofa mRNA, clone:TCH010100E07, expressed in trachea /gb=AK351117 /gi=288782845 /ug=Ssc.20404 /len=1484"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0012505//endomembrane system	"GO:0003676//nucleic acid binding;GO:0016763//transferase activity, transferring pentosyl groups;GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0000166//nucleotide binding"	GO:0040008//regulation of growth;GO:0006281//DNA repair;GO:0032868//response to insulin stimulus;GO:0016485//protein processing;GO:0006464//protein modification process	gi|17380223|sp|Q9R152.3|PARP1_CRIGR/1.00246e-172/RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1; AltName: Full=NAD(+) ADP-ribosyltransferase 1; Short=ADPRT 1; AltName: Full=Poly[ADP-ribose] synthase 1
gnl|UG|Ssc#S49953817	2	0.58	0	0	0	0	"Sus scrofa lymphocyte-specific protein tyrosine kinase (LCK) mRNA, complete cds /cds=p(123,1652) /gb=FJ436398 /gi=217314910 /ug=Ssc.19619 /len=2133"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0044425//membrane part;GO:0005813//centrosome	GO:0004713//protein tyrosine kinase activity;GO:0005102//receptor binding;GO:0019900//kinase binding;GO:0032559;GO:0019904//protein domain specific binding;GO:0004721//phosphoprotein phosphatase activity	GO:0050856//regulation of T cell receptor signaling pathway;GO:0050688//regulation of defense response to virus;GO:0042506//tyrosine phosphorylation of Stat5 protein;GO:0006915//apoptosis;GO:0012502//induction of programmed cell death;GO:0009605//response to external stimulus;GO:0045582//positive regulation of T cell differentiation;GO:0007599//hemostasis;GO:0000302//response to reactive oxygen species;GO:0010038//response to metal ion;GO:0051283;GO:0045987//positive regulation of smooth muscle contraction;GO:0031294	gi|219521996|ref|NP_001137185.1|/0/tyrosine-protein kinase Lck [Sus scrofa]
gnl|UG|Ssc#S58304076	2	0.58	0	0	5	1.5	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 4E type 3-like (LOC100525891), mRNA /cds=p(1,630) /gb=XM_003132321 /gi=311269159 /ug=Ssc.51548 /len=878"	GO:0034518;GO:0044424//intracellular part	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation	gi|311269160|ref|XP_003132369.1|/6.1743e-109/PREDICTED: eukaryotic translation initiation factor 4E type 3-like [Sus scrofa]
gnl|UG|Ssc#S35166838	19	5.47	3	0.86	13	3.91	"Sus scrofa mRNA, clone:THY010107H08, expressed in thymus /gb=AK239495 /gi=115552901 /ug=Ssc.25314 /len=2241"	GO:0005624//membrane fraction;GO:0048770	GO:0016802;GO:0046914//transition metal ion binding;GO:0017076//purine nucleotide binding;GO:0005515//protein binding	GO:0042219//cellular modified amino acid catabolic process;GO:0002437//inflammatory response to antigenic stimulus;GO:0031667//response to nutrient levels;GO:0006730//one-carbon metabolic process;GO:0048512//circadian behavior	gi|58801555|ref|NP_001011727.1|/0/adenosylhomocysteinase [Sus scrofa]
gnl|UG|Ssc#S58301850	69	19.87	143	40.88	36	10.82	"PREDICTED: Sus scrofa UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) (GALNT11), mRNA /cds=p(78,1904) /gb=XM_003134543 /gi=311275137 /ug=Ssc.7469 /len=2515"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0030246//carbohydrate binding;GO:0008376//acetylgalactosaminyltransferase activity	-	gi|311275138|ref|XP_003134591.1|/0/PREDICTED: polypeptide N-acetylgalactosaminyltransferase 11-like [Sus scrofa]
gnl|UG|Ssc#S23213456	274	78.89	472	134.92	235	70.62	"Sus scrofa clone Clu_15365.scr.msk.p1.Contig2, mRNA sequence /gb=AY609521 /gi=52351116 /ug=Ssc.3795 /len=2502"	GO:0000139//Golgi membrane;GO:0005740//mitochondrial envelope	GO:0005488//binding	GO:0009967//positive regulation of signal transduction;GO:0007005//mitochondrion organization	gi|291395197|ref|XP_002714146.1|/2.95501e-133/PREDICTED: golgi phosphoprotein 3 [Oryctolagus cuniculus]
gnl|UG|Ssc#S46612108	6	1.73	6	1.72	2	0.6	"Sus scrofa gamma-interferon-inducible-lysosomal thiol reductase mRNA, complete cds /cds=p(75,815) /gb=EF644197 /gi=157087107 /ug=Ssc.53751 /len=1062"	GO:0000323//lytic vacuole;GO:0044459//plasma membrane part	"GO:0016667//oxidoreductase activity, acting on a sulfur group of donors"	GO:0002474//antigen processing and presentation of peptide antigen via MHC class I;GO:0002478;GO:0019221//cytokine-mediated signaling pathway;GO:0008285//negative regulation of cell proliferation;GO:0031647//regulation of protein stability	gi|196259974|ref|NP_001124518.1|/9.79787e-126/gamma-interferon-inducible lysosomal thiol reductase [Sus scrofa]
gnl|UG|Ssc#S20935760	23	6.62	14	4	21	6.31	"AJ647483 CSEQRAN19 Sus scrofa cDNA clone C0003105_N01, mRNA sequence /clone=C0003105_N01 /gb=AJ647483 /gi=49324328 /ug=Ssc.85512 /len=481"	-	-	-	gi|211904140|ref|NP_001129738.1|/3.13059e-44/DAZ-associated protein 2 isoform c [Homo sapiens]
gnl|UG|Ssc#S58307251	0	0	3	0.86	3	0.9	"PREDICTED: Sus scrofa SH3 domain containing 19, transcript variant 1 (SH3D19), mRNA /cds=p(1,2364) /gb=XM_003129146 /gi=311262460 /ug=Ssc.48736 /len=4346"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0005515//protein binding	GO:0031331;GO:0048193//Golgi vesicle transport	gi|311262461|ref|XP_003129194.1|/0/PREDICTED: SH3 domain-containing protein 19-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58301534	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa up-regulator of cell proliferation-like (LOC100525140), mRNA /cds=p(1,2766) /gb=XM_003134864 /gi=311275784 /ug=Ssc.94019 /len=3334"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle	GO:0032561	GO:0009987//cellular process	gi|311275785|ref|XP_003134912.1|/0/PREDICTED: up-regulator of cell proliferation-like [Sus scrofa]
gnl|UG|Ssc#S35164565	77	22.17	15	4.29	54	16.23	"Sus scrofa mRNA, clone:MLN010025D11, expressed in mesenteric lymph node /gb=AK233776 /gi=115555161 /ug=Ssc.94267 /len=1912"	GO:0032991//macromolecular complex;GO:0015630//microtubule cytoskeleton	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0005198//structural molecule activity	GO:0007010//cytoskeleton organization;GO:0043623//cellular protein complex assembly;GO:0009207;GO:0007017//microtubule-based process;GO:0006458//'de novo' protein folding	gi|193786502|dbj|BAG51785.1|/6.38887e-170/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S18384905	2	0.58	0	0	2	0.6	"936122 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK465050 /gi=40836331 /ug=Ssc.25166 /len=732"	-	-	-	-
gnl|UG|Ssc#S55934017	11	3.17	0	0	11	3.31	"Sus scrofa calcium/calmodulin-dependent protein kinase I (CAMK1), mRNA /cds=p(157,1269) /gb=NM_001190195 /gi=298104121 /ug=Ssc.33316 /len=1465"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0004674//protein serine/threonine kinase activity;GO:0005515//protein binding;GO:0032559	GO:0048731;GO:0006796//phosphate metabolic process;GO:0023052//signaling;GO:0045597//positive regulation of cell differentiation;GO:0051169//nuclear transport;GO:0006464//protein modification process	gi|298104122|ref|NP_001177124.1|/0/calcium/calmodulin-dependent protein kinase type 1 [Sus scrofa]
gnl|UG|Ssc#S46877268	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa RRP12-like protein-like (LOC100155987), mRNA /cds=p(1,3588) /gb=XM_001925509 /gi=311271694 /ug=Ssc.24912 /len=3588"	GO:0005635//nuclear envelope;GO:0031224//intrinsic to membrane;GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|311271695|ref|XP_001925544.2|/0/PREDICTED: RRP12-like protein-like [Sus scrofa]
gnl|UG|Ssc#S52535154	20	5.76	9	2.57	36	10.82	"Sus scrofa influenza virus NS1A binding protein (IVNS1ABP), mRNA /cds=p(525,2453) /gb=NM_001161649 /gi=239504581 /ug=Ssc.7460 /len=2672"	GO:0043234//protein complex;GO:0043232;GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	-	"GO:0006351//transcription, DNA-dependent;GO:0051707//response to other organism;GO:0006396//RNA processing"	gi|239504582|ref|NP_001155121.1|/0/influenza virus NS1A-binding protein [Sus scrofa]
gnl|UG|Ssc#S55934031	29	8.35	21	6	13	3.91	"Sus scrofa BCL2-associated transcription factor 1 (BCLAF1), mRNA /cds=p(11,2776) /gb=NM_001190177 /gi=298104077 /ug=Ssc.10944 /len=5361"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding	"GO:0012502//induction of programmed cell death;GO:0006915//apoptosis;GO:0006355//regulation of transcription, DNA-dependent"	gi|298104078|ref|NP_001177106.1|/0/bcl-2-associated transcription factor 1 [Sus scrofa]
gnl|UG|Ssc#S58303109	30	8.64	28	8	10	3.01	"PREDICTED: Sus scrofa myc box-dependent-interacting protein 1-like (LOC100517734), mRNA /cds=p(155,2695) /gb=XM_003133287 /gi=311272184 /ug=Ssc.51736 /len=2695"	GO:0005856//cytoskeleton;GO:0030136//clathrin-coated vesicle;GO:0033267//axon part	GO:0019899//enzyme binding;GO:0046983//protein dimerization activity	GO:0043087//regulation of GTPase activity;GO:0030154//cell differentiation;GO:0030100//regulation of endocytosis	gi|311272185|ref|XP_003133335.1|/0/PREDICTED: myc box-dependent-interacting protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46879081	30	8.64	21	6	66	19.83	"PREDICTED: Sus scrofa RAN binding protein 9 (RANBP9), mRNA /cds=p(5,1504) /gb=XM_001928502 /gi=311259738 /ug=Ssc.9137 /len=2589"	GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton;GO:0044444//cytoplasmic part	GO:0017016//Ras GTPase binding	GO:0006935//chemotaxis;GO:0000226//microtubule cytoskeleton organization;GO:0065003	gi|74004091|ref|XP_535893.2|/0/PREDICTED: similar to RAN binding protein 9 [Canis familiaris]
gnl|UG|Ssc#S55287763	2099	604.31	3025	864.69	4435	1332.84	"FS702160 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010067G08 5', mRNA sequence /clone=PST010067G08 /clone_end=5' /gb=FS702160 /gi=288287935 /ug=Ssc.26752 /len=957"	GO:0031981//nuclear lumen;GO:0015934//large ribosomal subunit	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|15431303|ref|NP_000652.2|/5.2695e-96/60S ribosomal protein L9 [Homo sapiens]
gnl|UG|Ssc#S35165232	22	6.33	9	2.57	9	2.7	"Sus scrofa mRNA, clone:LVRM10161D05, expressed in liver /gb=AK233504 /gi=115554494 /ug=Ssc.26139 /len=1294"	GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0051536//iron-sulfur cluster binding;GO:0016462//pyrophosphatase activity;GO:0032559	GO:0031163;GO:0040007//growth;GO:0006875//cellular metal ion homeostasis	gi|115496988|ref|NP_001068763.1|/1.46625e-169/cytosolic Fe-S cluster assembly factor NUBP1 [Bos taurus]
gnl|UG|Ssc#S35172813	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:AMP010090G08, expressed in alveolar macrophage /gb=AK231077 /gi=115547022 /ug=Ssc.72251 /len=2860"	-	"GO:0017111//nucleoside-triphosphatase activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561"	GO:0006412//translation;GO:0023052//signaling;GO:0009207	gi|296483989|gb|DAA26104.1|/0/HBS1-like protein [Bos taurus]
gnl|UG|Ssc#S55243835	44	12.67	31	8.86	53	15.93	"FS667985 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10053F11 5', mRNA sequence /clone=HTMT10053F11 /clone_end=5' /gb=FS667985 /gi=288233064 /ug=Ssc.17265 /len=802"	-	-	-	-
gnl|UG|Ssc#S58307239	3	0.86	0	0	6	1.8	"PREDICTED: Sus scrofa protein arginine methyltransferase 10 (putative) (PRMT10), mRNA /cds=p(115,2151) /gb=XM_003129159 /gi=311262484 /ug=Ssc.82659 /len=2151"	GO:0044424//intracellular part	GO:0008168//methyltransferase activity	GO:0008213	gi|311262485|ref|XP_003129207.1|/0/PREDICTED: putative protein arginine N-methyltransferase 10-like [Sus scrofa]
gnl|UG|Ssc#S46881192	10	2.88	16	4.57	32	9.62	"PREDICTED: Sus scrofa pre-B-cell leukemia transcription factor 3-like (LOC100152438), mRNA /cds=p(94,882) /gb=XM_001927813 /gi=311246464 /ug=Ssc.22527 /len=2472"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	"GO:0021510//spinal cord development;GO:0007626//locomotory behavior;GO:0048468//cell development;GO:0007386//compartment pattern formation;GO:0006351//transcription, DNA-dependent;GO:0050877//neurological system process"	gi|291408331|ref|XP_002720475.1|/6.11005e-115/PREDICTED: pre-B-cell leukemia homeobox 3 [Oryctolagus cuniculus]
gnl|UG|Ssc#S6079916	2	0.58	9	2.57	3	0.9	"MI-P-CP1-nwo-b-03-0-UI.s1 MI-P-CP1 Sus scrofa cDNA clone MI-P-CP1-nwo-b-03-0-UI 3', mRNA sequence /clone=MI-P-CP1-nwo-b-03-0-UI /clone_end=3' /gb=BI403395 /gi=15182456 /ug=Ssc.82127 /len=286"	-	-	-	-
gnl|UG|Ssc#S58304056	2	0.58	2	0.57	4	1.2	"PREDICTED: Sus scrofa inositol 1,4,5-trisphosphate receptor type 1-like (LOC100514682), mRNA /cds=p(22,243) /gb=XM_003132339 /gi=311269205 /ug=Ssc.5605 /len=1504"	-	-	-	"gi|301769231|ref|XP_002920033.1|/1.92463e-38/PREDICTED: LOW QUALITY PROTEIN: inositol 1,4,5-trisphosphate receptor type 1-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S46877991	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa BEN domain-containing protein 6-like (LOC100153820), mRNA /cds=p(143,982) /gb=XM_001925201 /gi=311260221 /ug=Ssc.8325 /len=2258"	-	-	-	gi|194040268|ref|XP_001925236.1|/1.1783e-133/PREDICTED: BEN domain-containing protein 6-like [Sus scrofa]
gnl|UG|Ssc#S18554899	25	7.2	35	10	17	5.11	"BX923550 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0012.k.24 5prim, mRNA sequence /clone=scan0012.k.24 /clone_end=5' /gb=BX923550 /gi=90228428 /ug=Ssc.54678 /len=605"	GO:0005743//mitochondrial inner membrane;GO:0005758//mitochondrial intermembrane space	GO:0046914//transition metal ion binding	GO:0050954//sensory perception of mechanical stimulus;GO:0006612//protein targeting to membrane	gi|311263920|ref|XP_003129919.1|/3.16812e-26/PREDICTED: mitochondrial import inner membrane translocase subunit Tim8 B-like [Sus scrofa]
gnl|UG|Ssc#S42951501	2	0.58	0	0	0	0	"Sus scrofa complement component 4 mRNA, complete cds /cds=p(53,5278) /gb=EU076594 /gi=158537755 /ug=Ssc.60391 /len=5416"	GO:0044421//extracellular region part	GO:0061135	GO:0010466//negative regulation of peptidase activity;GO:0006952//defense response;GO:0002455//humoral immune response mediated by circulating immunoglobulin	gi|178056221|ref|NP_001116561.1|/0/complement C4 [Sus scrofa]
gnl|UG|Ssc#S23695922	9	2.59	15	4.29	2	0.6	"1104441 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN107025 /gi=59782288 /ug=Ssc.5856 /len=845"	-	GO:0019783//small conjugating protein-specific protease activity;GO:0005488//binding	GO:0019538//protein metabolic process	gi|57108641|ref|XP_544756.1|/7.14683e-91/PREDICTED: similar to SUMO/sentrin specific protease family member 8 [Canis familiaris]
gnl|UG|Ssc#S35168380	183	52.69	52	14.86	118	35.46	"Sus scrofa mRNA, clone:OVRM10133D12, expressed in ovary /gb=AK235988 /gi=115551310 /ug=Ssc.5630 /len=1584"	GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane;GO:0019866//organelle inner membrane	GO:0015140//malate transmembrane transporter activity	GO:0006835//dicarboxylic acid transport;GO:0006006//glucose metabolic process	gi|311268239|ref|XP_003131953.1|/3.73657e-173/PREDICTED: mitochondrial 2-oxoglutarate/malate carrier protein [Sus scrofa]
gnl|UG|Ssc#S58311470	6	1.73	0	0	0	0	"PREDICTED: Sus scrofa ring finger protein 103 (RNF103), mRNA /cds=p(1,2058) /gb=XM_003124930 /gi=311252198 /ug=Ssc.25676 /len=2501"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation;GO:0007399//nervous system development	gi|311252199|ref|XP_003124978.1|/0/PREDICTED: e3 ubiquitin-protein ligase RNF103-like [Sus scrofa]
gnl|UG|Ssc#S58304126	5	1.44	3	0.86	7	2.1	"PREDICTED: Sus scrofa filamin B, beta (FLNB), mRNA /cds=p(33,2678) /gb=XM_003132271 /gi=311269050 /ug=Ssc.6691 /len=4134"	-	-	-	gi|311269051|ref|XP_003132319.1|/0/PREDICTED: filamin-B [Sus scrofa]
gnl|UG|Ssc#S35171920	148	42.61	274	78.32	109	32.76	"Sus scrofa mRNA, clone:OVRM10027B12, expressed in ovary /gb=AK234891 /gi=115547915 /ug=Ssc.48803 /len=2230"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|114326218|ref|NP_001041535.1|/4.59002e-106/hematological and neurological expressed 1-like protein [Sus scrofa]
gnl|UG|Ssc#S39851750	21	6.05	3	0.86	11	3.31	"rcki27_h15.y1 cki Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV946832 /gi=178576026 /ug=Ssc.3942 /len=681"	-	-	-	gi|297705439|ref|XP_002829587.1|/2.93197e-08/PREDICTED: hypothetical protein LOC100460118 [Pongo abelii]
gnl|UG|Ssc#S35170659	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LNG010033C06, expressed in lung /gb=AK231856 /gi=115549180 /ug=Ssc.44188 /len=1697"	GO:0031981//nuclear lumen;GO:0005875//microtubule associated complex;GO:0005874//microtubule;GO:0016234//inclusion body;GO:0044444//cytoplasmic part	GO:0043130//ubiquitin binding;GO:0015631//tubulin binding;GO:0004407//histone deacetylase activity	GO:0009966//regulation of signal transduction;GO:0010556;GO:0016567//protein ubiquitination;GO:0070841;GO:0051128//regulation of cellular component organization;GO:0010033//response to organic substance;GO:0048518;GO:0080090//regulation of primary metabolic process;GO:0006886//intracellular protein transport;GO:0006476//protein deacetylation;GO:0033554//cellular response to stress;GO:0070887//cellular response to chemical stimulus;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0007019//microtubule depolymerization	gi|194227897|ref|XP_001493915.2|/6.96324e-165/PREDICTED: similar to histone deacetylase 6 [Equus caballus]
gnl|UG|Ssc#S55326727	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:OVRM10019F07, expressed in ovary /gb=AK347924 /gi=288778099 /ug=Ssc.27626 /len=2458"	GO:0044464//cell part;GO:0005578//proteinaceous extracellular matrix	GO:0046872//metal ion binding;GO:0005102//receptor binding	GO:0043062//extracellular structure organization;GO:0010810;GO:0032501//multicellular organismal process;GO:0048869	gi|311275936|ref|XP_003134995.1|/0/PREDICTED: LOW QUALITY PROTEIN: epidermal growth factor-like protein 6-like [Sus scrofa]
gnl|UG|Ssc#S6075496	16	4.61	11	3.14	10	3.01	"UNL-P-FN-cv-h-11-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-cv-h-11-0-UNL 3', mRNA sequence /clone=UNL-P-FN-cv-h-11-0-UNL /clone_end=3' /gb=BI185405 /gi=14659814 /ug=Ssc.81999 /len=348"	GO:0043234//protein complex;GO:0031981//nuclear lumen	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation	gi|301757498|ref|XP_002914618.1|/8.16992e-22/PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 3 subunit L-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58313586	2	0.58	4	1.14	4	1.2	"PREDICTED: Sus scrofa zinc transporter ZIP13-like (LOC100512266), mRNA /cds=p(41,1135) /gb=XM_003122808 /gi=311247876 /ug=Ssc.19882 /len=2231"	GO:0031224//intrinsic to membrane	GO:0008324//cation transmembrane transporter activity	GO:0000041//transition metal ion transport	gi|311247877|ref|XP_003122856.1|/1.19318e-154/PREDICTED: zinc transporter ZIP13-like [Sus scrofa]
gnl|UG|Ssc#S20938932	63	18.14	15	4.29	78	23.44	"AJ650655 CSEQRAN19 Sus scrofa cDNA clone C0003275_P07, mRNA sequence /clone=C0003275_P07 /gb=AJ650655 /gi=49327500 /ug=Ssc.74048 /len=467"	GO:0008023//transcription elongation factor complex	GO:0003723//RNA binding;GO:0004674//protein serine/threonine kinase activity;GO:0043565//sequence-specific DNA binding;GO:0032559	"GO:0006796//phosphate metabolic process;GO:0006352//transcription initiation, DNA-dependent;GO:0045935;GO:0006354//transcription elongation, DNA-dependent;GO:0006464//protein modification process"	gi|296190884|ref|XP_002743427.1|/4.43193e-42/PREDICTED: cell division protein kinase 9-like [Callithrix jacchus]
gnl|UG|Ssc#S35172597	49	14.11	62	17.72	21	6.31	"Sus scrofa mRNA, clone:OVR010096A03, expressed in ovary /gb=AK234611 /gi=115547238 /ug=Ssc.16869 /len=1825"	-	-	-	-
gnl|UG|Ssc#S35172398	10	2.88	2	0.57	0	0	"Sus scrofa mRNA, clone:SPL010101E11, expressed in spleen /gb=AK237819 /gi=115547437 /ug=Ssc.32687 /len=2156"	-	GO:0046914//transition metal ion binding;GO:0051536//iron-sulfur cluster binding;GO:0003824//catalytic activity;GO:0000166//nucleotide binding	GO:0006399//tRNA metabolic process	gi|300795272|ref|NP_001179682.1|/0/tRNA wybutosine-synthesizing protein 1 homolog [Bos taurus]
gnl|UG|Ssc#S55327225	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVR010029H10, expressed in ovary /gb=AK347424 /gi=288576831 /ug=Ssc.21601 /len=2695"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding	-	gi|311259424|ref|XP_003128093.1|/0/PREDICTED: target of EGR1 protein 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46879205	233	67.08	159	45.45	215	64.61	"PREDICTED: Sus scrofa TBC1 domain family, member 15, transcript variant 2 (TBC1D15), mRNA /cds=p(8,2032) /gb=XM_001925336 /gi=311255940 /ug=Ssc.7929 /len=3137"	GO:0044424//intracellular part	GO:0005099//Ras GTPase activator activity;GO:0005488//binding	GO:0032318//regulation of Ras GTPase activity	gi|194037760|ref|XP_001925371.1|/0/PREDICTED: TBC1 domain family member 15 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S16175995	5	1.44	7	2	7	2.1	"Sus scrofa forkhead-associated domain histidine-triad like protein mRNA, complete cds /cds=p(1,1071) /gb=AY040779 /gi=32394381 /ug=Ssc.17333 /len=1966"	-	-	-	gi|47523366|ref|NP_998899.1|/0/aprataxin [Sus scrofa]
gnl|UG|Ssc#S55325911	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:PBL010010D02, expressed in peripheral blood mononuclear cells /gb=AK348740 /gi=288778915 /ug=Ssc.81801 /len=3377"	GO:0044459//plasma membrane part;GO:0043232	GO:0005488//binding	GO:0065008;GO:0007165//signal transduction;GO:0006897//endocytosis	gi|156523186|ref|NP_001096007.1|/2.58627e-42/CDC42 small effector protein 2 [Bos taurus]
gnl|UG|Ssc#S58302679	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa lisH domain-containing protein ARMC9-like (LOC100519629), mRNA /cds=p(136,1722) /gb=XM_003133720 /gi=311273207 /ug=Ssc.29672 /len=1722"	-	-	-	gi|311273208|ref|XP_003133768.1|/0/PREDICTED: lisH domain-containing protein ARMC9-like [Sus scrofa]
gnl|UG|Ssc#S55321040	29	8.35	10	2.86	13	3.91	"Sus scrofa mRNA, clone:LNG010030A12, expressed in lung /gb=AK345447 /gi=288783832 /ug=Ssc.15237 /len=1123"	-	-	-	-
gnl|UG|Ssc#S55319601	9	2.59	2	0.57	17	5.11	"Sus scrofa mRNA, clone:LVRM10131H08, expressed in liver /gb=AK346290 /gi=288785283 /ug=Ssc.28348 /len=2961"	GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0031252//cell leading edge;GO:0042995//cell projection;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0046030//inositol trisphosphate phosphatase activity	GO:0043009//chordate embryonic development;GO:0007010//cytoskeleton organization;GO:0001933//negative regulation of protein phosphorylation;GO:0043434//response to peptide hormone stimulus;GO:0033500//carbohydrate homeostasis	gi|298231141|ref|NP_001177221.1|/0/inositol polyphosphate 5-phosphatase K [Sus scrofa]
gnl|UG|Ssc#S18383420	113	32.53	205	58.6	134	40.27	"934442 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK463529 /gi=40834810 /ug=Ssc.17384 /len=896"	-	-	-	-
gnl|UG|Ssc#S58303839	6	1.73	4	1.14	19	5.71	"PREDICTED: Sus scrofa coiled-coil domain containing 39 (CCDC39), partial mRNA /cds=p(1,1683) /gb=XM_003132558 /gi=311269700 /ug=Ssc.70914 /len=1683"	GO:0031224//intrinsic to membrane;GO:0019866//organelle inner membrane	"GO:0042625//ATPase activity, coupled to transmembrane movement of ions;GO:0046872//metal ion binding;GO:0005548//phospholipid transporter activity;GO:0032559"	GO:0009206;GO:0006811//ion transport;GO:0006869//lipid transport;GO:0009207	"gi|311269701|ref|XP_003132606.1|/0/PREDICTED: hypothetical protein LOC100155498, partial [Sus scrofa]"
gnl|UG|Ssc#S55266816	6	1.73	4	1.14	22	6.61	"FS669261 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10071B12 5', mRNA sequence /clone=HTMT10071B12 /clone_end=5' /gb=FS669261 /gi=288265113 /ug=Ssc.12023 /len=869"	-	-	-	-
gnl|UG|Ssc#S58306009	5	1.44	0	0	3	0.9	"PREDICTED: Sus scrofa translocated promoter region (to activated MET oncogene) (TPR), mRNA /cds=p(90,3284) /gb=XM_003130392 /gi=311264995 /ug=Ssc.22099 /len=3284"	"GO:0031981//nuclear lumen;GO:0000775//chromosome, centromeric region;GO:0005635//nuclear envelope"	GO:0005488//binding	GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0015758//glucose transport;GO:0044238//primary metabolic process	gi|311264996|ref|XP_003130440.1|/0/PREDICTED: nucleoprotein TPR-like [Sus scrofa]
gnl|UG|Ssc#S19548701	41	11.8	11	3.14	5	1.5	"995173 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN164797 /gi=46179227 /ug=Ssc.22208 /len=789"	-	-	-	-
gnl|UG|Ssc#S35168278	11	3.17	3	0.86	9	2.7	"Sus scrofa mRNA, clone:OVRM10151E02, expressed in ovary /gb=AK236090 /gi=115551412 /ug=Ssc.48223 /len=1522"	-	-	-	-
gnl|UG|Ssc#S46876139	181	52.11	129	36.87	180	54.09	"PREDICTED: Sus scrofa PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) (PRPF40A), mRNA /cds=p(1,2793) /gb=XM_001926788 /gi=311272467 /ug=Ssc.6297 /len=3883"	GO:0034399//nuclear periphery	GO:0005488//binding	GO:0006396//RNA processing	gi|311272468|ref|XP_001926823.2|/0/PREDICTED: pre-mRNA-processing factor 40 homolog A [Sus scrofa]
gnl|UG|Ssc#S58310302	59	16.99	22	6.29	116	34.86	"PREDICTED: Sus scrofa peptidyl-prolyl cis-trans isomerase FKBP11-like (LOC100524935), mRNA /cds=p(524,1129) /gb=XM_003126097 /gi=311255240 /ug=Ssc.8714 /len=1163"	GO:0031224//intrinsic to membrane	GO:0005527//macrolide binding;GO:0016859//cis-trans isomerase activity	GO:0018193//peptidyl-amino acid modification	gi|311255241|ref|XP_003126145.1|/2.53132e-77/PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP11-like [Sus scrofa]
gnl|UG|Ssc#S58302120	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa putative hydrolase RBBP9-like (LOC100523932), mRNA /cds=p(1,561) /gb=XM_003134274 /gi=311274433 /ug=Ssc.12968 /len=2354"	GO:0043231//intracellular membrane-bounded organelle	GO:0003824//catalytic activity	GO:0009311//oligosaccharide metabolic process;GO:0008283//cell proliferation	gi|311274434|ref|XP_003134322.1|/1.691e-98/PREDICTED: putative hydrolase RBBP9-like [Sus scrofa]
gnl|UG|Ssc#S55320387	122	35.12	335	95.76	148	44.48	"Sus scrofa mRNA, clone:LVR010049E07, expressed in liver /gb=AK345901 /gi=288784485 /ug=Ssc.32966 /len=2870"	GO:0031461//cullin-RING ubiquitin ligase complex;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0055080//cation homeostasis;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation	gi|114593466|ref|XP_517113.2|/0/PREDICTED: F-box and leucine-rich repeat protein 5 [Pan troglodytes]
gnl|UG|Ssc#S19546171	0	0	5	1.43	4	1.2	"951637 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN162267 /gi=46176697 /ug=Ssc.14452 /len=906"	-	-	-	"gi|149016385|gb|EDL75631.1|/9.42065e-07/rCG23949, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S58315206	33	9.5	2	0.57	29	8.72	"PREDICTED: Sus scrofa erythrocyte membrane protein band 4.1-like 2 (EPB41L2), mRNA /cds=p(9,2912) /gb=XM_003121204 /gi=311243938 /ug=Ssc.7021 /len=4157"	GO:0030864//cortical actin cytoskeleton;GO:0044425//membrane part	GO:0019904//protein domain specific binding;GO:0008092//cytoskeletal protein binding	GO:0065008;GO:0030036//actin cytoskeleton organization	gi|311243939|ref|XP_003121252.1|/0/PREDICTED: band 4.1-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S31120473	0	0	0	0	0	0	"1543070 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY424311 /gi=87225614 /ug=Ssc.36575 /len=630"	-	GO:0046914//transition metal ion binding	GO:0007165//signal transduction	gi|301765434|ref|XP_002918138.1|/1.73125e-17/PREDICTED: pleckstrin homology domain-containing family M member 3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46877911	5	1.44	6	1.72	0	0	"PREDICTED: Sus scrofa FtsJ methyltransferase domain containing 2 (FTSJD2), mRNA /cds=p(145,2652) /gb=XM_001924210 /gi=311260343 /ug=Ssc.2101 /len=3890"	GO:0031981//nuclear lumen	GO:0005488//binding;GO:0008171//O-methyltransferase activity	GO:0001510//RNA methylation;GO:0006397//mRNA processing	gi|311260344|ref|XP_001924245.2|/0/PREDICTED: cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Sus scrofa]
gnl|UG|Ssc#S58302270	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) (GALNT10), mRNA /cds=p(1,1875) /gb=XM_003134129 /gi=311274067 /ug=Ssc.80153 /len=1875"	-	-	-	gi|311274068|ref|XP_003134177.1|/0/PREDICTED: polypeptide N-acetylgalactosaminyltransferase 10-like [Sus scrofa]
gnl|UG|Ssc#S58302118	23	6.62	2	0.57	13	3.91	"PREDICTED: Sus scrofa protein transport protein Sec23B-like, transcript variant 1 (LOC100524115), mRNA /cds=p(821,3124) /gb=XM_003134275 /gi=311274437 /ug=Ssc.9770 /len=4030"	GO:0012507//ER to Golgi transport vesicle membrane;GO:0005793//ER-Golgi intermediate compartment	GO:0046914//transition metal ion binding	GO:0048193//Golgi vesicle transport;GO:0015031//protein transport	gi|311274436|ref|XP_003134324.1|/0/PREDICTED: protein transport protein Sec23B-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S23763043	45	12.96	16	4.57	35	10.52	"1120697 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN120662 /gi=59814941 /ug=Ssc.3929 /len=813"	-	-	-	-
gnl|UG|Ssc#S20939319	2	0.58	0	0	0	0	"AJ651042 CSEQRAN19 Sus scrofa cDNA clone C0003277_B06, mRNA sequence /clone=C0003277_B06 /gb=AJ651042 /gi=49327887 /ug=Ssc.85682 /len=531"	GO:0005875//microtubule associated complex;GO:0042995//cell projection;GO:0044444//cytoplasmic part	GO:0003774//motor activity;GO:0015631//tubulin binding;GO:0032559	GO:0051648//vesicle localization;GO:0007017//microtubule-based process;GO:0046907//intracellular transport;GO:0032988	gi|311265664|ref|XP_003130763.1|/2.97854e-42/PREDICTED: LOW QUALITY PROTEIN: kinesin-1 heavy chain [Sus scrofa]
gnl|UG|Ssc#S23213280	4	1.15	8	2.29	2	0.6	"Sus scrofa clone Clu_27940.scr.msk.p1.Contig1, mRNA sequence /gb=AY609728 /gi=52351296 /ug=Ssc.2769 /len=832"	GO:0000313;GO:0043231//intracellular membrane-bounded organelle	GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|311252138|ref|XP_003124942.1|/2.0254e-90/PREDICTED: 39S ribosomal protein L30, mitochondrial-like isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S6029540	0	0	0	0	4	1.2	"238077 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BF191298 /gi=11074667 /ti=470935933 /ug=Ssc.5413 /len=542"	-	-	-	gi|297690731|ref|XP_002822762.1|/2.50964e-07/PREDICTED: thymocyte nuclear protein 1-like isoform 1 [Pongo abelii]
gnl|UG|Ssc#S6006673	2	0.58	0	0	0	0	"303144 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BG384172 /gi=13308644 /ti=448051455 /ug=Ssc.28860 /len=419"	-	-	-	gi|57162297|emb|CAI40421.1|/3.76921e-06/syntaxin binding protein 5 (tomosyn) [Homo sapiens]
gnl|UG|Ssc#S50013343	3	0.86	0	0	3	0.9	"Sus scrofa vestigial-like 3 variant 1 (VGLL3) mRNA, complete cds, alternatively spliced /cds=p(5,991) /gb=FJ481172 /gi=218664754 /ug=Ssc.2237 /len=1589"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|221139739|ref|NP_001137401.1|/5.09943e-154/transcription cofactor vestigial-like protein 3 [Sus scrofa]
gnl|UG|Ssc#S58308529	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa zinc finger protein 521-like (LOC100514351), mRNA /cds=p(1,4851) /gb=XM_003127876 /gi=311259061 /ug=Ssc.94353 /len=4851"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	GO:0009987//cellular process	gi|311259062|ref|XP_003127924.1|/0/PREDICTED: zinc finger protein 521-like [Sus scrofa]
gnl|UG|Ssc#S58302998	10	2.88	7	2	3	0.9	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase HERC2-like (LOC100516114), mRNA /cds=p(350,14851) /gb=XM_003133398 /gi=311272437 /ug=Ssc.31949 /len=15611"	GO:0019866//organelle inner membrane;GO:0000152//nuclear ubiquitin ligase complex	GO:0030695//GTPase regulator activity;GO:0019787//small conjugating protein ligase activity;GO:0005506//iron ion binding	GO:0006259//DNA metabolic process;GO:0007088//regulation of mitosis;GO:0016567//protein ubiquitination;GO:0048232//male gamete generation;GO:0015031//protein transport	gi|311272438|ref|XP_003133446.1|/0/PREDICTED: e3 ubiquitin-protein ligase HERC2-like [Sus scrofa]
gnl|UG|Ssc#S55324157	37	10.65	6	1.72	12	3.61	"Sus scrofa mRNA, clone:SMG010051A11, expressed in submaxillary gland /gb=AK350051 /gi=288780715 /ug=Ssc.1299 /len=1597"	GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0032502//developmental process;GO:0032501//multicellular organismal process	gi|300795706|ref|NP_001179960.1|/1.06889e-159/DAZ-associated protein 1 [Bos taurus]
gnl|UG|Ssc#S50177919	16	4.61	46	13.15	20	6.01	"susfleck_LV_N_55_E08 SUSFLECK Liver Normalized Sus scrofa cDNA clone 55_E08, mRNA sequence /clone=55_E08 /gb=FD609755 /gi=221019942 /ug=Ssc.95783 /len=709"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0044459//plasma membrane part	GO:0017111//nucleoside-triphosphatase activity;GO:0005548//phospholipid transporter activity	GO:0071702;GO:0006811//ion transport;GO:0009207	gi|311245283|ref|XP_003121763.1|/4.86651e-40/PREDICTED: LOW QUALITY PROTEIN: probable phospholipid-transporting ATPase IC [Sus scrofa]
gnl|UG|Ssc#S58313559	3	0.86	0	0	4	1.2	"PREDICTED: Sus scrofa c-Jun-amino-terminal kinase-interacting protein 1-like (LOC100517574), mRNA /cds=p(1,2136) /gb=XM_003122834 /gi=311247930 /ug=Ssc.18271 /len=2893"	GO:0043231//intracellular membrane-bounded organelle;GO:0030426//growth cone;GO:0005626//insoluble fraction;GO:0030424//axon;GO:0044444//cytoplasmic part	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0019901//protein kinase binding;GO:0008092//cytoskeletal protein binding;GO:0019887//protein kinase regulator activity;GO:0032947//protein complex scaffold"	"GO:0006351//transcription, DNA-dependent;GO:0006810//transport;GO:0043409//negative regulation of MAPKKK cascade;GO:0043407//negative regulation of MAP kinase activity;GO:0043066//negative regulation of apoptosis"	gi|311247931|ref|XP_003122882.1|/0/PREDICTED: c-Jun-amino-terminal kinase-interacting protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55325578	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:PCT010019C05, expressed in placenta /gb=AK349073 /gi=288779248 /ug=Ssc.5547 /len=1851"	GO:0031981//nuclear lumen	GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0043566//structure-specific DNA binding	"GO:0043627//response to estrogen stimulus;GO:0009416//response to light stimulus;GO:0006355//regulation of transcription, DNA-dependent;GO:0048511//rhythmic process;GO:0008284//positive regulation of cell proliferation;GO:0022414//reproductive process;GO:0007610//behavior;GO:0032502//developmental process;GO:0006950//response to stress;GO:0009605//response to external stimulus"	gi|300794084|ref|NP_001179879.1|/4.77945e-130/fos-related antigen 2 [Bos taurus]
gnl|UG|Ssc#S40228093	32	9.21	4	1.14	8	2.4	"rlin40_e16.y1 lin Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW323000 /gi=182781511 /ug=Ssc.39918 /len=491"	-	-	-	-
gnl|UG|Ssc#S58314808	8	2.3	3	0.86	7	2.1	"PREDICTED: Sus scrofa INO80 homolog (S. cerevisiae) (INO80), mRNA /cds=p(625,5325) /gb=XM_003121588 /gi=311244966 /ug=Ssc.45003 /len=5325"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0004386//helicase activity;GO:0032559	GO:0016568//chromatin modification;GO:0009207	gi|311244967|ref|XP_003121636.1|/0/PREDICTED: putative DNA helicase INO80 complex homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S58303515	43	12.38	18	5.15	34	10.22	"PREDICTED: Sus scrofa sarcoplasmic/endoplasmic reticulum calcium ATPase 2-like (LOC100511903), mRNA /cds=p(1,1137) /gb=XM_003132879 /gi=311270618 /ug=Ssc.84435 /len=1693"	GO:0032991//macromolecular complex;GO:0016021//integral to membrane;GO:0005789//endoplasmic reticulum membrane;GO:0042598//vesicular fraction	GO:0001664//G-protein-coupled receptor binding;GO:0019829//cation-transporting ATPase activity;GO:0046872//metal ion binding;GO:0032559	GO:0009888//tissue development;GO:0007599//hemostasis;GO:0008016//regulation of heart contraction;GO:0006816//calcium ion transport;GO:0006936//muscle contraction;GO:0009207;GO:0007165//signal transduction;GO:0001775//cell activation;GO:0009206;GO:0009725//response to hormone stimulus;GO:0006875//cellular metal ion homeostasis	gi|311270619|ref|XP_003132927.1|/0/PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2-like [Sus scrofa]
gnl|UG|Ssc#S35169524	9	2.59	5	1.43	2	0.6	"Sus scrofa mRNA, clone:TES010076G07, expressed in testis /gb=AK238580 /gi=115550315 /ug=Ssc.28067 /len=1613"	-	-	-	"gi|119615480|gb|EAW95074.1|/1.69317e-112/chromosome 1 open reading frame 128, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S58304167	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa calcium channel, voltage-dependent, alpha 2/delta subunit 2, transcript variant 1 (CACNA2D2), mRNA /cds=p(1,3462) /gb=XM_003132229 /gi=311268949 /ug=Ssc.93992 /len=3462"	GO:0034704//calcium channel complex	GO:0005262//calcium channel activity;GO:0043169//cation binding;GO:0016247//channel regulator activity	GO:0015980//energy derivation by oxidation of organic compounds;GO:0048741//skeletal muscle fiber development;GO:0006816//calcium ion transport;GO:0032412;GO:0045927//positive regulation of growth;GO:0030073//insulin secretion;GO:0050804//regulation of synaptic transmission;GO:0035264//multicellular organism growth	gi|311268950|ref|XP_003132277.1|/0/PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S31107843	0	0	0	0	4	1.2	"1516455 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY411681 /gi=87212984 /ug=Ssc.64001 /len=549"	GO:0044424//intracellular part	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0043130//ubiquitin binding;GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination	gi|301782391|ref|XP_002926613.1|/7.60237e-39/PREDICTED: e3 ubiquitin-protein ligase DZIP3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58310942	0	0	2	0.57	5	1.5	"PREDICTED: Sus scrofa heat shock factor protein 1-like (LOC100511321), mRNA /cds=p(158,1819) /gb=XM_003125448 /gi=311253286 /ug=Ssc.5439 /len=2035"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	"GO:0035264//multicellular organism growth;GO:0001818//negative regulation of cytokine production;GO:0048232//male gamete generation;GO:0002237//response to molecule of bacterial origin;GO:0006351//transcription, DNA-dependent;GO:0008283//cell proliferation;GO:0001701//in utero embryonic development;GO:0006950//response to stress;GO:0006464//protein modification process"	gi|311253287|ref|XP_003125496.1|/0/PREDICTED: heat shock factor protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46879585	1090	313.82	1295	370.17	913	274.38	"PREDICTED: Sus scrofa tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ), mRNA /cds=p(461,1198) /gb=XM_001927228 /gi=311253550 /ug=Ssc.43394 /len=3730"	GO:0032991//macromolecular complex;GO:0044430//cytoskeletal part;GO:0000267//cell fraction;GO:0048770	GO:0005515//protein binding	GO:0042221//response to chemical stimulus;GO:0007599//hemostasis;GO:0006605//protein targeting;GO:0016070//RNA metabolic process;GO:0002441;GO:0001775//cell activation;GO:0043066//negative regulation of apoptosis	gi|301756356|ref|XP_002914041.1|/1.18041e-128/PREDICTED: 14-3-3 protein zeta/delta-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20116242	8	2.3	14	4	12	3.61	"Sus scrofa myeloid cell leukemia sequence 1 (BCL2-related) (MCL1), nuclear gene encoding mitochondrial protein, mRNA /cds=p(66,524) /gb=NM_214361 /gi=47523779 /ug=Ssc.13766 /len=2427"	GO:0031224//intrinsic to membrane;GO:0031966//mitochondrial membrane;GO:0031981//nuclear lumen	GO:0008320//protein transmembrane transporter activity;GO:0046983//protein dimerization activity	GO:0045165//cell fate commitment;GO:0032501//multicellular organismal process;GO:0043066//negative regulation of apoptosis;GO:0010033//response to organic substance	gi|47523780|ref|NP_999526.1|/2.9088e-61/induced myeloid leukemia cell differentiation protein Mcl-1 [Sus scrofa]
gnl|UG|Ssc#S58307599	21	6.05	9	2.57	11	3.31	"PREDICTED: Sus scrofa intestinal cell (MAK-like) kinase (ICK), mRNA /cds=p(1,1845) /gb=XM_003128795 /gi=311261752 /ug=Ssc.38286 /len=2028"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0035556//intracellular signal transduction;GO:0006464//protein modification process;GO:0032501//multicellular organismal process;GO:0006796//phosphate metabolic process	gi|311261753|ref|XP_003128843.1|/0/PREDICTED: serine/threonine-protein kinase ICK-like [Sus scrofa]
gnl|UG|Ssc#S46879689	6	1.73	0	0	4	1.2	"PREDICTED: Sus scrofa minichromosome maintenance complex component 4 (MCM4), mRNA /cds=p(68,2278) /gb=XM_001924933 /gi=311253848 /ug=Ssc.4612 /len=2640"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003678//DNA helicase activity;GO:0032559;GO:0043566//structure-specific DNA binding	GO:0007050//cell cycle arrest;GO:0006261//DNA-dependent DNA replication;GO:0051320	gi|311253849|ref|XP_001924968.2|/0/PREDICTED: DNA replication licensing factor MCM4 [Sus scrofa]
gnl|UG|Ssc#S46880549	0	0	4	1.14	4	1.2	"PREDICTED: Sus scrofa collagen, type XII, alpha 1 (COL12A1), mRNA /cds=p(165,5849) /gb=XM_001927036 /gi=311244456 /ug=Ssc.1049 /len=6676"	GO:0031012//extracellular matrix	-	-	gi|311244457|ref|XP_001927071.2|/0/PREDICTED: collagen alpha-1(XII) chain [Sus scrofa]
gnl|UG|Ssc#S58303062	2	0.58	0	0	10	3.01	"PREDICTED: Sus scrofa inhibitor of growth protein 2-like (LOC100516113), mRNA /cds=p(476,1318) /gb=XM_003133342 /gi=311272287 /ug=Ssc.7913 /len=1951"	GO:0005667//transcription factor complex;GO:0070822//Sin3-type complex	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0005515//protein binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0007179//transforming growth factor beta receptor signaling pathway"	gi|311272288|ref|XP_003133390.1|/2.71099e-107/PREDICTED: inhibitor of growth protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35172972	14	4.03	0	0	10	3.01	"Sus scrofa mRNA, clone:SPL010083E10, expressed in spleen /gb=AK237709 /gi=115546863 /ug=Ssc.16733 /len=2787"	-	-	-	-
gnl|UG|Ssc#S55305853	9	2.59	4	1.14	0	0	"FS704627 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010099E03 5', mRNA sequence /clone=PST010099E03 /clone_end=5' /gb=FS704627 /gi=288311095 /ug=Ssc.48874 /len=819"	GO:0070461//SAGA-type complex;GO:0016585//chromatin remodeling complex	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0004468//lysine N-acetyltransferase activity	"GO:0006355//regulation of transcription, DNA-dependent;GO:0016573//histone acetylation"	gi|291409520|ref|XP_002721088.1|/6.30108e-116/PREDICTED: TAF6-like RNA polymerase II [Oryctolagus cuniculus]
gnl|UG|Ssc#S35174285	54	15.55	19	5.43	23	6.91	"Sus scrofa mRNA, clone:AMP010022E04, expressed in alveolar macrophage /gb=AK230665 /gi=115545550 /ug=Ssc.56595 /len=2357"	GO:0005856//cytoskeleton;GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0008187//poly-pyrimidine tract binding	GO:0010468//regulation of gene expression;GO:0000377	"gi|148688440|gb|EDL20387.1|/0/heterogeneous nuclear ribonucleoprotein H2, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S55326406	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10106G10, expressed in ovary /gb=AK348245 /gi=288778420 /ug=Ssc.11511 /len=2361"	GO:0016020//membrane	-	-	gi|311256997|ref|XP_003126910.1|/3.72659e-146/PREDICTED: transmembrane protein 231-like isoform 3 [Sus scrofa]
gnl|UG|Ssc#S58308558	8	2.3	2	0.57	9	2.7	"PREDICTED: Sus scrofa myosin regulatory light chain, transcript variant 1 (MRLC2), mRNA /cds=p(349,867) /gb=XM_003127841 /gi=311259002 /ug=Ssc.93757 /len=1235"	GO:0032991//macromolecular complex;GO:0015629//actin cytoskeleton;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0046872//metal ion binding	GO:0003012//muscle system process;GO:0006935//chemotaxis	gi|228542|prf||1805343A/1.04195e-84/myosin:SUBUNIT=regulatory light chain
gnl|UG|Ssc#S23212849	0	0	0	0	5	1.5	"Sus scrofa clone Clu_81700.scr.msk.p1.Contig1, mRNA sequence /gb=AY610159 /gi=52351729 /ug=Ssc.6514 /len=1512"	GO:0044444//cytoplasmic part	"GO:0042802//identical protein binding;GO:0016857//racemase and epimerase activity, acting on carbohydrates and derivatives;GO:0048037//cofactor binding"	GO:0006012//galactose metabolic process	gi|158454979|gb|AAI02186.2|/0/GALE protein [Bos taurus]
gnl|UG|Ssc#S58313828	14	4.03	10	2.86	28	8.41	"PREDICTED: Sus scrofa phosphorylase, glycogen, muscle (PYGM), mRNA /cds=p(71,4363) /gb=XM_003122588 /gi=311247380 /ug=Ssc.35330 /len=4419"	-	GO:0004645//phosphorylase activity;GO:0048037//cofactor binding	GO:0005977//glycogen metabolic process	"gi|311247381|ref|XP_003122636.1|/0/PREDICTED: glycogen phosphorylase, muscle form [Sus scrofa]"
gnl|UG|Ssc#S35170440	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10079G08, expressed in ovary /gb=AK235421 /gi=115549399 /ug=Ssc.49763 /len=1744"	GO:0031224//intrinsic to membrane	-	GO:0050896//response to stimulus;GO:0008283//cell proliferation	gi|281348778|gb|EFB24362.1|/1.04832e-30/hypothetical protein PANDA_011313 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58309780	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa ADAM metallopeptidase with thrombospondin type 1 motif, 20 (ADAMTS20), mRNA /cds=p(1,4104) /gb=XM_003126621 /gi=311256465 /ug=Ssc.44480 /len=4332"	-	-	GO:0009987//cellular process;GO:0050789//regulation of biological process	gi|311256466|ref|XP_003126669.1|/0/PREDICTED: LOW QUALITY PROTEIN: A disintegrin and metalloproteinase with thrombospondin motifs 20 [Sus scrofa]
gnl|UG|Ssc#S58311466	33	9.5	46	13.15	20	6.01	"PREDICTED: Sus scrofa lysine-specific demethylase 3A-like (LOC100517522), mRNA /cds=p(24,3995) /gb=XM_003124935 /gi=311252206 /ug=Ssc.9960 /len=4785"	GO:0043231//intracellular membrane-bounded organelle	"GO:0046914//transition metal ion binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0035258//steroid hormone receptor binding"	"GO:0048869;GO:0030518//steroid hormone receptor signaling pathway;GO:0070076//histone lysine demethylation;GO:0048232//male gamete generation;GO:0006351//transcription, DNA-dependent;GO:0044283"	gi|311252207|ref|XP_003124983.1|/0/PREDICTED: lysine-specific demethylase 3A-like [Sus scrofa]
gnl|UG|Ssc#S55318861	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:UTR010047E11, expressed in uterus /gb=AK352309 /gi=288786023 /ug=Ssc.9686 /len=952"	GO:0031981//nuclear lumen	GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0019941//modification-dependent protein catabolic process	"gi|119615395|gb|EAW94989.1|/7.17962e-162/ubiquitin specific peptidase 48, isoform CRA_c [Homo sapiens]"
gnl|UG|Ssc#S58313480	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa neuron navigator 2-like (LOC100521067), mRNA /cds=p(205,2472) /gb=XM_003122917 /gi=311248088 /ug=Ssc.45622 /len=2813"	-	-	-	gi|296471864|gb|DAA13979.1|/0/retinoic acid inducible in neuroblastoma cells RAINB1d-like isoform 2 [Bos taurus]
gnl|UG|Ssc#S55934038	8	2.3	11	3.14	10	3.01	"Sus scrofa FAT tumor suppressor homolog 1 (Drosophila) (FAT1), mRNA /cds=p(1,13767) /gb=NM_001190170 /gi=297747349 /ug=Ssc.7357 /len=14558"	GO:0030054//cell junction;GO:0031252//cell leading edge;GO:0016021//integral to membrane;GO:0042995//cell projection	GO:0046872//metal ion binding	GO:0016337//cell-cell adhesion;GO:0032502//developmental process;GO:0007154//cell communication;GO:0030036//actin cytoskeleton organization	gi|297747350|ref|NP_001177099.1|/0/FAT tumor suppressor homolog 1 [Sus scrofa]
gnl|UG|Ssc#S55327620	16	4.61	3	0.86	23	6.91	"Sus scrofa Na,K-ATPase alpha 2 subunit (LOC396828), mRNA /cds=p(11,3073) /gb=NM_001171541 /gi=284009805 /ug=Ssc.14403 /len=3082"	GO:0043231//intracellular membrane-bounded organelle;GO:0030425//dendrite;GO:0042598//vesicular fraction;GO:0005887//integral to plasma membrane	GO:0008556//potassium-transporting ATPase activity;GO:0031420;GO:0032559	"GO:0007626//locomotory behavior;GO:0008016//regulation of heart contraction;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0007632//visual behavior;GO:0042310//vasoconstriction;GO:0009207;GO:0051480//cytosolic calcium ion homeostasis;GO:0001505//regulation of neurotransmitter levels;GO:0009206;GO:0006942//regulation of striated muscle contraction"	"gi|284009806|ref|NP_001165012.1|/0/Na,K-ATPase alpha 2 subunit [Sus scrofa]"
gnl|UG|Ssc#S58306069	13	3.74	15	4.29	11	3.31	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase RFWD2-like (LOC100520856), mRNA /cds=p(164,2101) /gb=XM_003130329 /gi=311264870 /ug=Ssc.48571 /len=2708"	GO:0005815//microtubule organizing center;GO:0016604//nuclear body;GO:0005924//cell-substrate adherens junction	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	"GO:0007050//cell cycle arrest;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0032446//protein modification by small protein conjugation"	gi|311264871|ref|XP_003130377.1|/0/PREDICTED: e3 ubiquitin-protein ligase RFWD2-like [Sus scrofa]
gnl|UG|Ssc#S6043463	2	0.58	5	1.43	0	0	"376234 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BI346877 /gi=15040166 /ti=470952636 /ug=Ssc.5302 /len=577"	-	-	-	-
gnl|UG|Ssc#S58304771	69	19.87	49	14.01	39	11.72	"PREDICTED: Sus scrofa serine carboxypeptidase 1 (SCPEP1), mRNA /cds=p(63,2570) /gb=XM_003131627 /gi=311267654 /ug=Ssc.51980 /len=2570"	GO:0044444//cytoplasmic part	GO:0004180//carboxypeptidase activity	GO:0019538//protein metabolic process;GO:0001523//retinoid metabolic process	gi|311267655|ref|XP_003131675.1|/0/PREDICTED: retinoid-inducible serine carboxypeptidase-like [Sus scrofa]
gnl|UG|Ssc#S55320034	11	3.17	3	0.86	4	1.2	"Sus scrofa mRNA, clone:LVRM10024C06, expressed in liver /gb=AK346056 /gi=288784838 /ug=Ssc.23557 /len=2772"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0030528//transcription regulator activity;GO:0008134//transcription factor binding;GO:0019900//kinase binding;GO:0043565//sequence-specific DNA binding;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0043168	GO:0042108//positive regulation of cytokine biosynthetic process;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0014037//Schwann cell differentiation;GO:0043434//response to peptide hormone stimulus;GO:0051091//positive regulation of transcription factor activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050851//antigen receptor-mediated signaling pathway;GO:0002062//chondrocyte differentiation;GO:0032583//regulation of gene-specific transcription;GO:0009653//anatomical structure morphogenesis;GO:0009895;GO:0014072;GO:0009411//response to UV;GO:0008544//epidermis development;GO:0043066//negative regulation of apoptosis;GO:0000302//response to reactive oxygen species;GO:0070423;GO:0032494//response to peptidoglycan;GO:0006081//cellular aldehyde metabolic process;GO:0001101//response to acid;GO:0002252;GO:0009968//negative regulation of signal transduction;GO:0048545//response to steroid hormone stimulus;GO:0008283//cell proliferation;GO:0033619//membrane protein proteolysis;GO:0002224//toll-like receptor signaling pathway;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0033273//response to vitamin;GO:0034097//response to cytokine stimulus;GO:0032496//response to lipopolysaccharide	gi|166796055|ref|NP_001107753.1|/1.63103e-172/transcription factor p65 [Sus scrofa]
gnl|UG|Ssc#S26726323	22	6.33	2	0.57	10	3.01	"AJ962407 KN404_2 Sus scrofa cDNA clone C0007759o10 3', mRNA sequence /clone=C0007759o10 /clone_end=3' /gb=AJ962407 /gi=74379223 /ug=Ssc.35496 /len=883"	GO:0031012//extracellular matrix	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding	GO:0009057//macromolecule catabolic process;GO:0019538//protein metabolic process;GO:0032501//multicellular organismal process	gi|311269109|ref|XP_003132346.1|/7.02926e-28/PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 9-like [Sus scrofa]
gnl|UG|Ssc#S58301038	93	26.78	57	16.29	64	19.23	"PREDICTED: Sus scrofa cohesin subunit SA-2-like (LOC100520943), mRNA /cds=p(160,3648) /gb=XM_003135359 /gi=311276907 /ug=Ssc.25766 /len=5563"	GO:0044427;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0007059//chromosome segregation;GO:0007067//mitosis;GO:0010948	gi|74008284|ref|XP_864876.1|/0/PREDICTED: similar to stromal antigen 2 isoform 3 [Canis familiaris]
gnl|UG|Ssc#S46879507	5	1.44	0	0	8	2.4	"PREDICTED: Sus scrofa zinc finger and BTB domain containing 10, transcript variant 1 (ZBTB10), mRNA /cds=p(1,2622) /gb=XM_001928277 /gi=311253689 /ug=Ssc.82912 /len=3759"	-	-	-	gi|194037134|ref|XP_001928312.1|/0/PREDICTED: zinc finger and BTB domain-containing protein 10 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58312738	7	2.02	0	0	3	0.9	"PREDICTED: Sus scrofa max dimerization protein 3-like (LOC100512157), mRNA /cds=p(618,1238) /gb=XM_003123679 /gi=311249594 /ug=Ssc.54239 /len=1613"	-	GO:0003676//nucleic acid binding	"GO:0006355//regulation of transcription, DNA-dependent"	gi|311249595|ref|XP_003123727.1|/7.21337e-63/PREDICTED: max dimerization protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58301695	23	6.62	21	6	4	1.2	"PREDICTED: Sus scrofa filamin C, gamma, transcript variant 1 (FLNC), mRNA /cds=p(1,8163) /gb=XM_003134699 /gi=311275456 /ug=Ssc.46794 /len=8881"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0005515//protein binding	GO:0034330	gi|311275457|ref|XP_003134747.1|/0/PREDICTED: filamin-C-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58305098	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 (TANC2), mRNA /cds=p(1,4755) /gb=XM_003131299 /gi=311266985 /ug=Ssc.75819 /len=4951"	-	-	-	gi|311266986|ref|XP_003131347.1|/0/PREDICTED: protein TANC2-like [Sus scrofa]
gnl|UG|Ssc#S18555135	5	1.44	0	0	2	0.6	"BX923786 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0012.g.02 5prim, mRNA sequence /clone=scan0012.g.02 /clone_end=5' /gb=BX923786 /gi=90229256 /ug=Ssc.32457 /len=854"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding	GO:0001773//myeloid dendritic cell activation;GO:0042093//T-helper cell differentiation;GO:0010467//gene expression;GO:0002460//adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	gi|114677777|ref|XP_512742.2|/3.43668e-58/PREDICTED: reticuloendotheliosis viral oncogene homolog B isoform 2 [Pan troglodytes]
gnl|UG|Ssc#S55326877	5	1.44	0	0	2	0.6	"Sus scrofa mRNA, clone:OVR010096C07, expressed in ovary /gb=AK347774 /gi=288777949 /ug=Ssc.75729 /len=1978"	GO:0031981//nuclear lumen;GO:0031461//cullin-RING ubiquitin ligase complex;GO:0005887//integral to plasma membrane	GO:0005267//potassium channel activity;GO:0017048//Rho GTPase binding;GO:0019787//small conjugating protein ligase activity	GO:0007266//Rho protein signal transduction;GO:0006275//regulation of DNA replication;GO:0007275//multicellular organismal development;GO:0030001//metal ion transport;GO:0012501//programmed cell death;GO:0051017//actin filament bundle assembly;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0048870//cell motility;GO:0051259//protein oligomerization;GO:0034220//ion transmembrane transport;GO:0002376//immune system process;GO:0032446//protein modification by small protein conjugation	gi|482321|pir||A41784/0/tumor necrosis factor-alpha-induced protein B12 - human
gnl|UG|Ssc#S35172100	2	0.58	3	0.86	0	0	"Sus scrofa mRNA, clone:ITT010053G09, expressed in intestine /gb=AK231393 /gi=115547735 /ug=Ssc.18528 /len=2222"	GO:0031224//intrinsic to membrane	-	GO:0006810//transport	gi|269847416|ref|NP_073573.2|/0/major facilitator superfamily domain-containing protein 1 isoform 1 [Homo sapiens]
gnl|UG|Ssc#S35173299	20	5.76	15	4.29	10	3.01	"Sus scrofa mRNA, clone:OVR010049F12, expressed in ovary /gb=AK234374 /gi=115546536 /ug=Ssc.55804 /len=1241"	GO:0005746//mitochondrial respiratory chain	GO:0048038//quinone binding;GO:0043169//cation binding;GO:0051536//iron-sulfur cluster binding;GO:0000104//succinate dehydrogenase activity	GO:0022900//electron transport chain;GO:0043648//dicarboxylic acid metabolic process;GO:0009060//aerobic respiration;GO:0051234//establishment of localization	"gi|157279735|ref|NP_001098423.1|/5.26609e-161/succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial precursor [Sus scrofa]"
gnl|UG|Ssc#S52128907	4	1.15	5	1.43	2	0.6	"Sus scrofa SET and MYND domain containing 3 (SMYD3), mRNA /cds=p(255,1364) /gb=NM_001160092 /gi=229892825 /ug=Ssc.10518 /len=1613"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0016279//protein-lysine N-methyltransferase activity	GO:0016571//histone methylation	gi|291402060|ref|XP_002717678.1|/0/PREDICTED: SET and MYND domain containing 3 [Oryctolagus cuniculus]
gnl|UG|Ssc#S58313477	4	1.15	2	0.57	4	1.2	"PREDICTED: Sus scrofa palmitoyltransferase ZDHHC13-like (LOC100522978), mRNA /cds=p(1,1017) /gb=XM_003122926 /gi=311248094 /ug=Ssc.86782 /len=1017"	-	-	-	-
gnl|UG|Ssc#S58305725	19	5.47	7	2	15	4.51	"PREDICTED: Sus scrofa DDB1 and CUL4 associated factor 12, transcript variant 2 (DCAF12), mRNA /cds=p(279,1643) /gb=XM_003130665 /gi=311265576 /ug=Ssc.1368 /len=3613"	GO:0005815//microtubule organizing center;GO:0031461//cullin-RING ubiquitin ligase complex	-	GO:0032446//protein modification by small protein conjugation	gi|311265577|ref|XP_003130713.1|/0/PREDICTED: DDB1- and CUL4-associated factor 12-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S16144347	17	4.89	7	2	16	4.81	"Sus scrofa pyruvate carboxylase mRNA, complete cds /cds=p(1,3537) /gb=AY225510 /gi=32185983 /ug=Ssc.17347 /len=3537"	-	-	-	"gi|47523756|ref|NP_999514.1|/0/pyruvate carboxylase, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S58306178	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa semaphorin-3E-like (LOC100524100), mRNA /cds=p(1,2133) /gb=XM_003130220 /gi=311264647 /ug=Ssc.84555 /len=2133"	GO:0044421//extracellular region part;GO:0044464//cell part	GO:0004871//signal transducer activity	GO:0006935//chemotaxis;GO:0048731;GO:0023052//signaling;GO:0048869	gi|311264648|ref|XP_003130268.1|/0/PREDICTED: semaphorin-3E-like [Sus scrofa]
gnl|UG|Ssc#S58315187	11	3.17	2	0.57	16	4.81	"PREDICTED: Sus scrofa centromere protein W-like (LOC100513385), mRNA /cds=p(169,435) /gb=XM_003121218 /gi=311243986 /ug=Ssc.21611 /len=660"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427	GO:0003676//nucleic acid binding	-	gi|311243987|ref|XP_003121266.1|/3.49753e-43/PREDICTED: centromere protein W-like [Sus scrofa]
gnl|UG|Ssc#S55322655	14	4.03	5	1.43	11	3.31	"Sus scrofa mRNA, clone:DCI010046B03, expressed in dendritic cells (immature) /gb=AK344428 /gi=288782217 /ug=Ssc.13817 /len=1384"	GO:0031966//mitochondrial membrane;GO:0016021//integral to membrane;GO:0019866//organelle inner membrane;GO:0005792//microsome	GO:0005488//binding;GO:0022829//wide pore channel activity;GO:0005244//voltage-gated ion channel activity	GO:0006863//purine base transport;GO:0007611//learning or memory;GO:0007268//synaptic transmission;GO:0002209//behavioral defense response;GO:0034220//ion transmembrane transport;GO:0043269//regulation of ion transport	gi|114619980|ref|XP_001138480.1|/3.24703e-162/PREDICTED: similar to voltage dependent anion channel form 3 [Pan troglodytes]
gnl|UG|Ssc#S20936223	28	8.06	22	6.29	27	8.11	"AJ647946 CSEQRAN19 Sus scrofa cDNA clone C0003263_C09, mRNA sequence /clone=C0003263_C09 /gb=AJ647946 /gi=49324791 /ug=Ssc.74093 /len=485"	GO:0032991//macromolecular complex;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0016909//SAP kinase activity;GO:0003712//transcription cofactor activity	GO:0032583//regulation of gene-specific transcription;GO:0008285//negative regulation of cell proliferation;GO:0001658//branching involved in ureteric bud morphogenesis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006917//induction of apoptosis;GO:0043405//regulation of MAP kinase activity	gi|60360182|dbj|BAD90336.1|/1.15296e-46/mFLJ00163 protein [Mus musculus]
gnl|UG|Ssc#S35172407	10	2.88	10	2.86	8	2.4	"Sus scrofa mRNA, clone:SPL010099H04, expressed in spleen /gb=AK237810 /gi=115547428 /ug=Ssc.53839 /len=1774"	"GO:0005815//microtubule organizing center;GO:0005875//microtubule associated complex;GO:0000775//chromosome, centromeric region;GO:0030427//site of polarized growth"	GO:0017111//nucleoside-triphosphatase activity;GO:0005488//binding	GO:0000087//M phase of mitotic cell cycle	gi|311255766|ref|XP_003126352.1|/0/PREDICTED: dynactin subunit 2-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S29974024	0	0	0	0	2	0.6	"PDUts1082C11 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1082C11 5' similar to homologue to ref|XM_044196.7| Homo sapiens DKFZP434C212 protein (DKFZP434C212), mRNA, mRNA sequence /clone=PDUts1082C11 /clone_end=5' /gb=CV870682 /gi=84124642 /ug=Ssc.88344 /len=646"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0005515//protein binding;GO:0030695//GTPase regulator activity	GO:0051049//regulation of transport;GO:0016192//vesicle-mediated transport;GO:0009966//regulation of signal transduction	gi|124047146|dbj|BAA96045.3|/2.24456e-84/KIAA1521 protein [Homo sapiens]
gnl|UG|Ssc#S58308974	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa membrane bound O-acyltransferase domain containing 7 (MBOAT7), mRNA /cds=p(48,1466) /gb=XM_003127417 /gi=311258151 /ug=Ssc.54745 /len=2054"	GO:0031224//intrinsic to membrane	"GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups"	GO:0006644//phospholipid metabolic process	gi|311258152|ref|XP_003127465.1|/0/PREDICTED: lysophospholipid acyltransferase 7-like [Sus scrofa]
gnl|UG|Ssc#S35170463	11	3.17	12	3.43	13	3.91	"Sus scrofa mRNA, clone:OVRM10077B01, expressed in ovary /gb=AK235398 /gi=115549376 /ug=Ssc.3508 /len=1740"	GO:0031012//extracellular matrix	-	GO:0048232//male gamete generation	gi|296475118|gb|DAA17233.1|/0/cartilage associated protein [Bos taurus]
gnl|UG|Ssc#S58309406	14	4.03	2	0.57	15	4.51	"PREDICTED: Sus scrofa phosphorylase b kinase regulatory subunit beta-like (LOC100520789), mRNA /cds=p(44,1567) /gb=XM_003126992 /gi=311257274 /ug=Ssc.4717 /len=2331"	GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0015926//glucosidase activity;GO:0004683//calmodulin-dependent protein kinase activity;GO:0005515//protein binding	GO:0006796//phosphate metabolic process;GO:0005977//glycogen metabolic process;GO:0019318//hexose metabolic process	gi|311257275|ref|XP_003127040.1|/0/PREDICTED: phosphorylase b kinase regulatory subunit beta-like [Sus scrofa]
gnl|UG|Ssc#S46877217	693	199.52	934	266.98	722	216.98	"PREDICTED: Sus scrofa meningioma expressed antigen 5 (hyaluronidase), transcript variant 1 (MGEA5), mRNA /cds=p(1,2751) /gb=XM_001928026 /gi=311271752 /ug=Ssc.8052 /len=4770"	GO:0043231//intracellular membrane-bounded organelle	GO:0004563//beta-N-acetylhexosaminidase activity;GO:0004468//lysine N-acetyltransferase activity	GO:0009057//macromolecule catabolic process;GO:0016570//histone modification;GO:0010561;GO:0032846;GO:0010828//positive regulation of glucose transport;GO:0006041//glucosamine metabolic process;GO:0030162//regulation of proteolysis;GO:0010522;GO:0060123//regulation of growth hormone secretion;GO:0009215;GO:0032502//developmental process;GO:0006605//protein targeting;GO:0010612;GO:0008219//cell death;GO:0043241//protein complex disassembly;GO:0043270//positive regulation of ion transport;GO:0050796//regulation of insulin secretion;GO:0010604;GO:0009725//response to hormone stimulus;GO:0001906//cell killing	gi|194041895|ref|XP_001928061.1|/0/PREDICTED: bifunctional protein NCOAT isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58304193	6	1.73	0	0	3	0.9	"PREDICTED: Sus scrofa ubiquitin specific peptidase 19 (USP19), mRNA /cds=p(1,3720) /gb=XM_003132209 /gi=311268892 /ug=Ssc.29059 /len=3911"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0006511//ubiquitin-dependent protein catabolic process;GO:0007049//cell cycle	gi|311268893|ref|XP_003132257.1|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Sus scrofa]
gnl|UG|Ssc#S16765107	130	37.43	178	50.88	107	32.16	"830499 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF362729 /gi=34162675 /ug=Ssc.83160 /len=415"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0060089;GO:0008135//translation factor activity, nucleic acid binding"	GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0006412//translation	gi|172047287|sp|A5D989.2|EF1D_BOVIN/4.72349e-57/RecName: Full=Elongation factor 1-delta; Short=EF-1-delta
gnl|UG|Ssc#S20939282	469	135.03	61	17.44	55	16.53	"AJ651005 CSEQRAN19 Sus scrofa cDNA clone C0003276_P05, mRNA sequence /clone=C0003276_P05 /gb=AJ651005 /gi=49327850 /ug=Ssc.74098 /len=482"	GO:0044424//intracellular part	-	GO:0044238//primary metabolic process;GO:0044260;GO:0010467//gene expression	"gi|148702005|gb|EDL33952.1|/8.26907e-25/mCG116386, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S38482852	93	26.78	36	10.29	155	46.58	"EST-AO236F06 Alveolar macrophage from PRRSV-infected pig Sus scrofa cDNA clone AO236F06, mRNA sequence /clone=AO236F06 /gb=ES448004 /gi=146289594 /ug=Ssc.54540 /len=787"	GO:0019898//extrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0050793//regulation of developmental process;GO:0001101//response to acid;GO:0044093;GO:0023052//signaling	"gi|119573783|gb|EAW53398.1|/1.32773e-32/S100 calcium binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11)), isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S40495537	642	184.83	107	30.59	443	133.13	"rssp25_o1.y1 ssp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW590143 /gi=183101183 /ug=Ssc.48136 /len=680"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0015078//hydrogen ion transmembrane transporter activity	GO:0051234//establishment of localization;GO:0022900//electron transport chain	gi|311248261|ref|XP_003123044.1|/2.15931e-27/PREDICTED: cytochrome b-c1 complex subunit 10-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46879921	10	2.88	8	2.29	10	3.01	"PREDICTED: Sus scrofa aryl hydrocarbon receptor nuclear translocator, transcript variant 2 (ARNT), mRNA /cds=p(1,2466) /gb=XM_001929670 /gi=311254366 /ug=Ssc.23791 /len=2466"	GO:0043231//intracellular membrane-bounded organelle	GO:0004871//signal transducer activity;GO:0005102//receptor binding;GO:0003712//transcription cofactor activity;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0046983//protein dimerization activity;GO:0003677//DNA binding	GO:0032583//regulation of gene-specific transcription;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006110//regulation of glycolysis;GO:0001935//endothelial cell proliferation;GO:0031328//positive regulation of cellular biosynthetic process;GO:0045639//positive regulation of myeloid cell differentiation;GO:0001819//positive regulation of cytokine production;GO:0009967//positive regulation of signal transduction;GO:0016925//protein sumoylation;GO:0034599//cellular response to oxidative stress;GO:0001701//in utero embryonic development	gi|311254367|ref|XP_001929705.2|/0/PREDICTED: aryl hydrocarbon receptor nuclear translocator isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35170533	63	18.14	36	10.29	60	18.03	"Sus scrofa mRNA, clone:OVRM10059E01, expressed in ovary /gb=AK235227 /gi=115549306 /ug=Ssc.78676 /len=2111"	GO:0044424//intracellular part	GO:0019787//small conjugating protein ligase activity	GO:0051704;GO:0032446//protein modification by small protein conjugation	gi|114586239|ref|XP_516355.2|/0/PREDICTED: F-box and leucine-rich repeat protein 2 [Pan troglodytes]
gnl|UG|Ssc#S58314458	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa amyloid beta (A4) precursor protein-binding, family A, member 1 (APBA1), mRNA /cds=p(1,2514) /gb=XM_003121942 /gi=311245880 /ug=Ssc.80646 /len=2540"	GO:0032991//macromolecular complex;GO:0030136//clathrin-coated vesicle;GO:0016020//membrane	GO:0035091//phosphatidylinositol binding;GO:0019904//protein domain specific binding	GO:0048731;GO:0043009//chordate embryonic development;GO:0040007//growth;GO:0023061;GO:0006887//exocytosis;GO:0010467//gene expression;GO:0007610//behavior;GO:0065003;GO:0015031//protein transport;GO:0010970//microtubule-based transport	gi|311245881|ref|XP_003121990.1|/0/PREDICTED: amyloid beta A4 precursor protein-binding family A member 1-like [Sus scrofa]
gnl|UG|Ssc#S55326762	13	3.74	8	2.29	13	3.91	"Sus scrofa mRNA, clone:OVRM10011H10, expressed in ovary /gb=AK347889 /gi=288778064 /ug=Ssc.10929 /len=2569"	-	-	-	gi|311267839|ref|XP_003131769.1|/3.23328e-50/PREDICTED: TATA-binding protein-associated factor 2N-like [Sus scrofa]
gnl|UG|Ssc#S55324149	162	46.64	134	38.3	61	18.33	"Sus scrofa mRNA, clone:SMG010057E04, expressed in submaxillary gland /gb=AK350059 /gi=288780723 /ug=Ssc.22009 /len=1328"	GO:0031224//intrinsic to membrane	-	-	gi|301776915|ref|XP_002923877.1|/3.04664e-85/PREDICTED: UPF0694 transmembrane protein C14orf109 homolog [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58301570	9	2.59	5	1.43	7	2.1	"PREDICTED: Sus scrofa tax1-binding protein 1 homolog (LOC100516165), mRNA /cds=p(118,1401) /gb=XM_003134825 /gi=311275710 /ug=Ssc.6722 /len=3113"	GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0019899//enzyme binding;GO:0032182//small conjugating protein binding	GO:0001818//negative regulation of cytokine production;GO:0043433//negative regulation of transcription factor activity;GO:0043066//negative regulation of apoptosis	gi|311275711|ref|XP_003134873.1|/0/PREDICTED: tax1-binding protein 1 homolog [Sus scrofa]
gnl|UG|Ssc#S35172028	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10015H03, expressed in ovary /gb=AK234783 /gi=115547807 /ug=Ssc.10110 /len=2760"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0003702//RNA polymerase II transcription factor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007423//sensory organ development	gi|296483389|gb|DAA25504.1|/0/Meis homeobox 2 isoform 2 [Bos taurus]
gnl|UG|Ssc#S58312923	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa calcium homeostasis endoplasmic reticulum protein-like (LOC100514394), mRNA /cds=p(1,1983) /gb=XM_003123483 /gi=311249216 /ug=Ssc.4874 /len=3281"	GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding	GO:0048731;GO:0008283//cell proliferation;GO:0006875//cellular metal ion homeostasis	gi|311249217|ref|XP_003123531.1|/0/PREDICTED: calcium homeostasis endoplasmic reticulum protein-like [Sus scrofa]
gnl|UG|Ssc#S46876352	55	15.83	45	12.86	60	18.03	"PREDICTED: Sus scrofa proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 (PSMD1), mRNA /cds=p(154,3015) /gb=XM_001925902 /gi=311273209 /ug=Ssc.1480 /len=3284"	GO:0022624	GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0009894;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|194043678|ref|XP_001925937.1|/0/PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 [Sus scrofa]
gnl|UG|Ssc#S21575172	17	4.89	19	5.43	12	3.61	"UMC-pd3end1-003-f06 Endometrium gilt D3 of estrous cycle pd3end Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO988132 /gi=51347406 /ug=Ssc.86555 /len=334"	-	-	-	-
gnl|UG|Ssc#S35167854	26	7.49	12	3.43	13	3.91	"Sus scrofa mRNA, clone:OVRM10174A06, expressed in ovary /gb=AK236292 /gi=115551885 /ug=Ssc.49591 /len=3188"	GO:0031981//nuclear lumen;GO:0030529//ribonucleoprotein complex	GO:0003723//RNA binding	"GO:0006915//apoptosis;GO:0000380//alternative nuclear mRNA splicing, via spliceosome;GO:0008283//cell proliferation"	gi|311268925|ref|XP_003132269.1|/0/PREDICTED: RNA-binding protein 5-like [Sus scrofa]
gnl|UG|Ssc#S55934016	14	4.03	11	3.14	5	1.5	"Sus scrofa armadillo repeat containing 1 (ARMC1), mRNA /cds=p(228,1076) /gb=NM_001190196 /gi=298104123 /ug=Ssc.25768 /len=3029"	GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding	GO:0006812//cation transport	gi|298104124|ref|NP_001177125.1|/6.86625e-156/armadillo repeat-containing protein 1 [Sus scrofa]
gnl|UG|Ssc#S35168252	4	1.15	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10153F06, expressed in ovary /gb=AK236116 /gi=115551438 /ug=Ssc.44710 /len=1248"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0003712//transcription cofactor activity;GO:0005488//binding;GO:0004857//enzyme inhibitor activity	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0043409//negative regulation of MAPKKK cascade	gi|311268296|ref|XP_003131982.1|/7.65834e-160/PREDICTED: G protein pathway suppressor 2-like [Sus scrofa]
gnl|UG|Ssc#S39881269	4	1.15	3	0.86	4	1.2	"rcly26b_e16.y1 cly Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV976344 /gi=178546158 /ug=Ssc.95490 /len=495"	-	-	-	-
gnl|UG|Ssc#S35173448	6	1.73	6	1.72	17	5.11	"Sus scrofa mRNA, clone:AMP010062C04, expressed in alveolar macrophage /gb=AK230906 /gi=115546387 /ug=Ssc.26892 /len=1690"	GO:0043234//protein complex;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0004690//cyclic nucleotide-dependent protein kinase activity;GO:0032559;GO:0005515//protein binding;GO:0043169//cation binding;GO:0030295//protein kinase activator activity	GO:0045767//regulation of anti-apoptosis;GO:0034614//cellular response to reactive oxygen species;GO:0010828//positive regulation of glucose transport;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0010243//response to organic nitrogen;GO:0022402//cell cycle process;GO:0006464//protein modification process;GO:0008203//cholesterol metabolic process;GO:0045471//response to ethanol;GO:0045923//positive regulation of fatty acid metabolic process;GO:0001666//response to hypoxia;GO:0010893//positive regulation of steroid biosynthetic process;GO:0046317;GO:0008283//cell proliferation;GO:0051259//protein oligomerization;GO:0006094//gluconeogenesis;GO:0006412//translation;GO:0000165//MAPKKK cascade;GO:0014074//response to purine-containing compound	gi|301774478|ref|XP_002922657.1|/0/PREDICTED: 5'-AMP-activated protein kinase catalytic subunit alpha-1-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55326737	2	0.58	0	0	4	1.2	"Sus scrofa mRNA, clone:OVRM10017F12, expressed in ovary /gb=AK347914 /gi=288778089 /ug=Ssc.808 /len=2609"	GO:0044429//mitochondrial part	"GO:0019842//vitamin binding;GO:0043169//cation binding;GO:0016879//ligase activity, forming carbon-nitrogen bonds;GO:0005515//protein binding;GO:0016421//CoA carboxylase activity;GO:0032559"	GO:0009062//fatty acid catabolic process	"gi|311266499|ref|XP_003131115.1|/3.70567e-102/PREDICTED: propionyl-CoA carboxylase alpha chain, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58303978	36	10.36	12	3.43	8	2.4	"PREDICTED: Sus scrofa dnaJ homolog subfamily C member 13-like (LOC100152107), mRNA /cds=p(1,6732) /gb=XM_003132418 /gi=311269386 /ug=Ssc.34706 /len=7490"	-	GO:0005515//protein binding	GO:0023052//signaling	gi|311269387|ref|XP_003132466.1|/0/PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 13-like [Sus scrofa]
gnl|UG|Ssc#S46878749	234	67.37	557	159.22	247	74.23	"PREDICTED: Sus scrofa neuroplastin (NPTN), mRNA /cds=p(23,1207) /gb=XM_001928665 /gi=311260825 /ug=Ssc.70468 /len=2241"	GO:0031224//intrinsic to membrane	GO:0005104//fibroblast growth factor receptor binding	GO:0016337//cell-cell adhesion;GO:0010975//regulation of neuron projection development;GO:0051480//cytosolic calcium ion homeostasis;GO:0001932//regulation of protein phosphorylation;GO:0009967//positive regulation of signal transduction;GO:0048169//regulation of long-term neuronal synaptic plasticity	gi|311260826|ref|XP_001928700.2|/0/PREDICTED: neuroplastin [Sus scrofa]
gnl|UG|Ssc#S58315251	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like (LOC100156182), mRNA /cds=p(1,2073) /gb=XM_003121149 /gi=311243808 /ug=Ssc.34309 /len=2073"	GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0031593//polyubiquitin binding	GO:0033674//positive regulation of kinase activity;GO:0050851//antigen receptor-mediated signaling pathway;GO:0051091//positive regulation of transcription factor activity;GO:0048513//organ development;GO:0002224//toll-like receptor signaling pathway;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0000165//MAPKKK cascade	gi|311243809|ref|XP_003121197.1|/0/PREDICTED: LOW QUALITY PROTEIN: TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58312672	3	0.86	3	0.86	2	0.6	"PREDICTED: Sus scrofa lipoma HMGIC fusion partner-like 2 protein-like (LOC100523234), mRNA /cds=p(346,1032) /gb=XM_003123729 /gi=311249728 /ug=Ssc.18354 /len=5165"	GO:0031224//intrinsic to membrane	-	-	gi|311249729|ref|XP_003123777.1|/4.27482e-108/PREDICTED: lipoma HMGIC fusion partner-like 2 protein-like [Sus scrofa]
gnl|UG|Ssc#S35173473	11	3.17	2	0.57	9	2.7	"Sus scrofa mRNA, clone:AMP010058H11, expressed in alveolar macrophage /gb=AK230881 /gi=115546362 /ug=Ssc.11554 /len=1248"	GO:0000313;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	"gi|311270165|ref|XP_003132793.1|/0/PREDICTED: 39S ribosomal protein L39, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S55834709	0	0	2	0.57	0	0	"Sus scrofa autophagy related 2-like protein B (ATG2B) mRNA, complete cds /cds=p(1,6234) /gb=HM046522 /gi=296874511 /ug=Ssc.44628 /len=6234"	-	-	-	gi|298231113|ref|NP_001177206.1|/0/autophagy-related protein 2 homolog B [Sus scrofa]
gnl|UG|Ssc#S58310742	14	4.03	50	14.29	22	6.61	"PREDICTED: Sus scrofa death effector domain-containing protein-like, transcript variant 2 (LOC100156474), mRNA /cds=p(155,1111) /gb=XM_003125653 /gi=311253972 /ug=Ssc.70237 /len=2329"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0048232//male gamete generation;GO:0008624//induction of apoptosis by extracellular signals"	gi|194036896|ref|XP_001927399.1|/2.70224e-165/PREDICTED: death effector domain-containing protein-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S6087697	35	10.08	13	3.72	18	5.41	"MI-P-E7-agj-e-02-1-UM.s1 MI-P-E7 Sus scrofa cDNA clone MI-P-E7-agj-e-02-1-UM 3', mRNA sequence /clone=MI-P-E7-agj-e-02-1-UM /clone_end=3' /gb=BQ600062 /gi=21546788 /ug=Ssc.82389 /len=368"	-	-	-	-
gnl|UG|Ssc#S35164499	0	0	0	0	0	0	"Sus scrofa mRNA, clone:MLN010050H05, expressed in mesenteric lymph node /gb=AK233842 /gi=115555227 /ug=Ssc.25117 /len=2344"	GO:0015630//microtubule cytoskeleton;GO:0005768//endosome	GO:0003774//motor activity;GO:0032559	GO:0000819//sister chromatid segregation;GO:0007017//microtubule-based process;GO:0007599//hemostasis	gi|194040298|ref|XP_001927880.1|/0/PREDICTED: kinesin family member C1 [Sus scrofa]
gnl|UG|Ssc#S6008754	6	1.73	0	0	0	0	"322834 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BG609260 /gi=13659238 /ti=448053454 /ug=Ssc.79604 /len=554"	-	-	-	-
gnl|UG|Ssc#S55327564	2	0.58	0	0	0	0	"Sus scrofa mutL-like protein 1 (MLH1) mRNA, complete cds /cds=p(63,2336) /gb=GU373696 /gi=285818445 /ug=Ssc.37705 /len=2495"	GO:0043073//germ cell nucleus;GO:0000794//condensed nuclear chromosome;GO:0032300//mismatch repair complex	GO:0017111//nucleoside-triphosphatase activity;GO:0030983//mismatched DNA binding;GO:0032559;GO:0032404	"GO:0002566;GO:0007131//reciprocal meiotic recombination;GO:0000019//regulation of mitotic recombination;GO:0000726;GO:0008629//induction of apoptosis by intracellular signals;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;GO:0009207;GO:0007128//meiotic prophase I;GO:0051255//spindle midzone assembly;GO:0007292//female gamete generation;GO:0048232//male gamete generation;GO:0007140//male meiosis;GO:0002204//somatic recombination of immunoglobulin genes involved in immune response;GO:0045143//homologous chromosome segregation"	gi|298160978|ref|NP_001165838.1|/0/DNA mismatch repair protein Mlh1 [Sus scrofa]
gnl|UG|Ssc#S21553297	0	0	2	0.57	0	0	"UMC-p4mm3-011-f07 4mm ovarian follicle p4mm Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO944932 /gi=51311691 /ug=Ssc.86384 /len=397"	-	-	-	-
gnl|UG|Ssc#S34497148	2	0.58	0	0	0	0	"DB807939 full-length enriched swine cDNA library, adult liver Sus scrofa cDNA 3', mRNA sequence /clone=LVR010012A06 /clone_end=3' /gb=DB807939 /gi=112780365 /ug=Ssc.86975 /len=713"	GO:0044464//cell part	GO:0004518//nuclease activity;GO:0043169//cation binding	-	"gi|307776322|pdb|2XRI|A/8.19165e-44/Chain A, Crystal Structure Of Human Eri1 Exoribonuclease 3"
gnl|UG|Ssc#S20116789	3	0.86	0	0	0	0	"Sus scrofa serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 (SERPINE1), mRNA /cds=p(138,1346) /gb=NM_213910 /gi=47522667 /ug=Ssc.9781 /len=3000"	GO:0031091//platelet alpha granule;GO:0000267//cell fraction;GO:0016020//membrane;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity;GO:0004866//endopeptidase inhibitor activity;GO:0019899//enzyme binding	GO:0009629//response to gravity;GO:0010466//negative regulation of peptidase activity;GO:0001775//cell activation;GO:0016525//negative regulation of angiogenesis;GO:0006915//apoptosis;GO:0030195//negative regulation of blood coagulation;GO:0009888//tissue development;GO:0009966//regulation of signal transduction;GO:0032102;GO:0030194//positive regulation of blood coagulation;GO:0045807//positive regulation of endocytosis;GO:0006887//exocytosis;GO:0031349//positive regulation of defense response;GO:0031960//response to corticosteroid stimulus;GO:0007569//cell aging;GO:0042742//defense response to bacterium;GO:0006979//response to oxidative stress;GO:0001819//positive regulation of cytokine production;GO:0033500//carbohydrate homeostasis;GO:0002548//monocyte chemotaxis;GO:0008283//cell proliferation;GO:0002540//leukotriene production involved in inflammatory response;GO:0014909//smooth muscle cell migration;GO:0001953//negative regulation of cell-matrix adhesion;GO:0010755;GO:0032496//response to lipopolysaccharide	gi|47522668|ref|NP_999075.1|/0/plasminogen activator inhibitor 1 precursor [Sus scrofa]
gnl|UG|Ssc#S17510099	3	0.86	5	1.43	0	0	"BX665125 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0004.e.04 5prim, mRNA sequence /clone=scag0004.e.04 /clone_end=5' /gb=BX665125 /gi=90227006 /ug=Ssc.80338 /len=887"	-	GO:0005488//binding	-	"gi|73964504|ref|XP_547986.2|/1.42942e-153/PREDICTED: similar to CG11141-PB, isoform B [Canis familiaris]"
gnl|UG|Ssc#S55325104	0	0	7	2	2	0.6	"Sus scrofa mRNA, clone:PTG010088E12, expressed in pituitary gland /gb=AK349504 /gi=288779768 /ug=Ssc.8085 /len=1308"	GO:0043231//intracellular membrane-bounded organelle;GO:0033267//axon part;GO:0005624//membrane fraction	GO:0046872//metal ion binding;GO:0055102//lipase inhibitor activity	GO:0043066//negative regulation of apoptosis;GO:0006584//catecholamine metabolic process	gi|162951819|ref|NP_001106164.1|/1.44479e-47/beta-synuclein [Sus scrofa]
gnl|UG|Ssc#S55326103	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10200A11, expressed in ovary /gb=AK348548 /gi=288778723 /ug=Ssc.49584 /len=1382"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0008287//protein serine/threonine phosphatase complex	GO:0043169//cation binding;GO:0004721//phosphoprotein phosphatase activity;GO:0004702//receptor signaling protein serine/threonine kinase activity	GO:0048646//anatomical structure formation involved in morphogenesis;GO:0006796//phosphate metabolic process;GO:0007010//cytoskeleton organization;GO:0006464//protein modification process	gi|4506027|ref|NP_002711.1|/2.01823e-180/serine/threonine-protein phosphatase 4 catalytic subunit [Homo sapiens]
gnl|UG|Ssc#S35174054	2	0.58	10	2.86	0	0	"Sus scrofa mRNA, clone:OVR010028A09, expressed in ovary /gb=AK234214 /gi=115545781 /ug=Ssc.11695 /len=1034"	GO:0044424//intracellular part	GO:0005488//binding	GO:0000904//cell morphogenesis involved in differentiation	gi|311262961|ref|XP_003129431.1|/2.94324e-103/PREDICTED: proline-rich protein BCA3-like [Sus scrofa]
gnl|UG|Ssc#S19538730	30	8.64	22	6.29	14	4.21	"942182 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN154922 /gi=46169352 /ug=Ssc.62244 /len=696"	GO:0005856//cytoskeleton	GO:0003779//actin binding	GO:0007010//cytoskeleton organization	gi|311247148|ref|XP_003122508.1|/4.93284e-107/PREDICTED: coronin-1B-like [Sus scrofa]
gnl|UG|Ssc#S46876118	6	1.73	6	1.72	2	0.6	"PREDICTED: Sus scrofa CCR4-NOT transcription complex, subunit 7 (CNOT7), mRNA /cds=p(69,908) /gb=XM_001924460 /gi=311274201 /ug=Ssc.6620 /len=2446"	GO:0005667//transcription factor complex;GO:0044444//cytoplasmic part	GO:0030528//transcription regulator activity;GO:0005488//binding;GO:0060089;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0023052//signaling;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|311274202|ref|XP_001924495.2|/3.07085e-135/PREDICTED: CCR4-NOT transcription complex subunit 7 [Sus scrofa]
gnl|UG|Ssc#S58305619	6	1.73	5	1.43	5	1.5	"PREDICTED: Sus scrofa polycomb complex protein BMI-1-like (LOC100520800), mRNA /cds=p(16,996) /gb=XM_003130780 /gi=311265795 /ug=Ssc.13321 /len=3013"	GO:0043234//protein complex;GO:0044451//nucleoplasm part	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0019904//protein domain specific binding;GO:0019787//small conjugating protein ligase activity	GO:0001501//skeletal system development;GO:0033080//immature T cell proliferation in thymus;GO:0017145//stem cell division;GO:0007417//central nervous system development;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0016570//histone modification;GO:0048562//embryonic organ morphogenesis;GO:0009952//anterior/posterior pattern formation;GO:0031398//positive regulation of protein ubiquitination;GO:0006955//immune response;GO:0030888//regulation of B cell proliferation;GO:0043009//chordate embryonic development;GO:0008284//positive regulation of cell proliferation;GO:0006915//apoptosis	gi|114629744|ref|XP_521425.2|/6.37746e-178/PREDICTED: polycomb group ring finger 4 [Pan troglodytes]
gnl|UG|Ssc#S58307171	6	1.73	10	2.86	0	0	"PREDICTED: Sus scrofa synaptopodin 2 (SYNPO2), mRNA /cds=p(180,3965) /gb=XM_003129229 /gi=311262624 /ug=Ssc.27972 /len=3965"	GO:0031674//I band;GO:0043231//intracellular membrane-bounded organelle	GO:0051393//alpha-actinin binding	-	gi|311262625|ref|XP_003129277.1|/0/PREDICTED: synaptopodin-2-like [Sus scrofa]
gnl|UG|Ssc#S58304462	212	61.04	441	126.06	70	21.04	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 5A-1-like, transcript variant 2 (LOC100517970), mRNA /cds=p(335,799) /gb=XM_003131931 /gi=311268291 /ug=Ssc.55314 /len=1508"	GO:0043005//neuron projection;GO:0044297//cell body;GO:0042175//nuclear membrane-endoplasmic reticulum network;GO:0005635//nuclear envelope;GO:0031090//organelle membrane;GO:0044444//cytoplasmic part	"GO:0005515//protein binding;GO:0043021//ribonucleoprotein binding;GO:0017069//snRNA binding;GO:0008135//translation factor activity, nucleic acid binding"	GO:0045597//positive regulation of cell differentiation;GO:0006605//protein targeting;GO:0008283//cell proliferation;GO:0006449//regulation of translational termination;GO:0006915//apoptosis;GO:0012502//induction of programmed cell death;GO:0018205//peptidyl-lysine modification;GO:0006405//RNA export from nucleus;GO:0006448//regulation of translational elongation	gi|114666486|ref|XP_001174773.1|/1.96495e-91/PREDICTED: similar to eukaryotic initiation factor 5A isoform I variant A [Pan troglodytes]
gnl|UG|Ssc#S58306476	19	5.47	2	0.57	12	3.61	"PREDICTED: Sus scrofa trafficking protein particle complex subunit 4-like (LOC100516212), mRNA /cds=p(484,1143) /gb=XM_003129918 /gi=311264037 /ug=Ssc.54303 /len=1415"	GO:0043005//neuron projection;GO:0044459//plasma membrane part;GO:0030136//clathrin-coated vesicle;GO:0005801//cis-Golgi network	GO:0005488//binding	GO:0031175//neuron projection development;GO:0048193//Golgi vesicle transport	gi|84370033|ref|NP_001033591.1|/2.68214e-119/trafficking protein particle complex subunit 4 [Bos taurus]
gnl|UG|Ssc#S31105617	2	0.58	7	2	3	0.9	"1513200 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY409455 /gi=87210758 /ug=Ssc.47521 /len=658"	-	GO:0043169//cation binding	-	gi|301782645|ref|XP_002926740.1|/3.41673e-51/PREDICTED: PHD finger protein 14-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35168067	2	0.58	3	0.86	5	1.5	"Sus scrofa mRNA, clone:THY010062C11, expressed in thymus /gb=AK239087 /gi=115551623 /ug=Ssc.83428 /len=1316"	-	-	-	-
gnl|UG|Ssc#S58309232	50	14.4	14	4	92	27.65	"PREDICTED: Sus scrofa protein capicua homolog (LOC100514052), mRNA /cds=p(1,4764) /gb=XM_003127167 /gi=311257626 /ug=Ssc.35062 /len=5391"	-	GO:0005488//binding	-	gi|311257627|ref|XP_003127215.1|/0/PREDICTED: protein capicua homolog [Sus scrofa]
gnl|UG|Ssc#S38478498	402	115.74	439	125.49	125	37.57	"CES046794 Sus scrofa subtractive cDNA library from liver tissue (LIVa) Sus scrofa cDNA clone CCL067284, mRNA sequence /clone=CCL067284 /gb=ES443067 /gi=146268667 /ug=Ssc.60012 /len=475"	GO:0005759//mitochondrial matrix;GO:0019866//organelle inner membrane	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0003676//nucleic acid binding;GO:0016209//antioxidant activity;GO:0003824//catalytic activity	"GO:0003068;GO:0008637//apoptotic mitochondrial changes;GO:0009611//response to wounding;GO:0033483;GO:0045596//negative regulation of cell differentiation;GO:0055080//cation homeostasis;GO:0006355//regulation of transcription, DNA-dependent;GO:0048534;GO:0042743//hydrogen peroxide metabolic process;GO:0031328//positive regulation of cellular biosynthetic process;GO:0048468//cell development;GO:0022900//electron transport chain;GO:0008285//negative regulation of cell proliferation;GO:0007610//behavior;GO:0050954//sensory perception of mechanical stimulus;GO:0006790//sulfur compound metabolic process;GO:0050931//pigment cell differentiation;GO:0009991//response to extracellular stimulus;GO:0006801//superoxide metabolic process;GO:0010212//response to ionizing radiation;GO:0000305//response to oxygen radical;GO:0051260//protein homooligomerization;GO:0042391//regulation of membrane potential;GO:0050880//regulation of blood vessel size;GO:0009593//detection of chemical stimulus;GO:0043066//negative regulation of apoptosis"	gi|256665379|gb|ACV04835.1|/6.19982e-74/mitochondrial superoxide dismutase 2 [Ovis aries]
gnl|UG|Ssc#S55326203	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10166B07, expressed in ovary /gb=AK348448 /gi=288778623 /ug=Ssc.93708 /len=2351"	-	-	-	gi|148645276|gb|ABR01162.1|/0/endonuclease/reverse transcriptase [Sus scrofa]
gnl|UG|Ssc#S58313363	33	9.5	44	12.58	23	6.91	"PREDICTED: Sus scrofa nicalin (NCLN), mRNA /cds=p(185,1873) /gb=XM_003123036 /gi=311248327 /ug=Ssc.11130 /len=3253"	GO:0031090//organelle membrane;GO:0031224//intrinsic to membrane;GO:0031981//nuclear lumen	GO:0005488//binding;GO:0016787//hydrolase activity	GO:0019538//protein metabolic process;GO:0007165//signal transduction	gi|73987473|ref|XP_542180.2|/0/PREDICTED: similar to nicalin [Canis familiaris]
gnl|UG|Ssc#S26720520	69	19.87	51	14.58	59	17.73	"AJ956604 KN404_2 Sus scrofa cDNA clone C0007755p06 5', mRNA sequence /clone=C0007755p06 /clone_end=5' /gb=AJ956604 /gi=74373420 /ug=Ssc.46069 /len=774"	-	-	-	-
gnl|UG|Ssc#S40558025	167	48.08	98	28.01	200	60.11	"rthg30_k5.y1 thg Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW644738 /gi=183127078 /ug=Ssc.53956 /len=715"	-	-	-	-
gnl|UG|Ssc#S45783726	3	0.86	2	0.57	0	0	"Sus scrofa disintegrin and metallopeptidase domain 10 (ADAM10) mRNA, complete cds /cds=p(1,2247) /gb=EU753851 /gi=190610713 /ug=Ssc.87428 /len=2247"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0044430//cytoskeletal part;GO:0005626//insoluble fraction;GO:0044431//Golgi apparatus part;GO:0031224//intrinsic to membrane;GO:0012505//endomembrane system	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005102//receptor binding;GO:0019904//protein domain specific binding;GO:0042802//identical protein binding;GO:0019900//kinase binding	GO:0002274;GO:0007155//cell adhesion;GO:0002690//positive regulation of leukocyte chemotaxis;GO:0008283//cell proliferation;GO:0043009//chordate embryonic development;GO:0006509//membrane protein ectodomain proteolysis;GO:0007154//cell communication;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0034097//response to cytokine stimulus;GO:0006464//protein modification process;GO:0016049//cell growth;GO:0051169//nuclear transport	gi|194474050|ref|NP_001124003.1|/0/disintegrin and metalloproteinase domain-containing protein 10 [Sus scrofa]
gnl|UG|Ssc#S46880724	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa PH domain and leucine rich repeat protein phosphatase 1 (PHLPP1), mRNA /cds=p(1,4392) /gb=XM_001925030 /gi=311245231 /ug=Ssc.71604 /len=4392"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0004721//phosphoprotein phosphatase activity	GO:0048017//inositol lipid-mediated signaling;GO:0012501//programmed cell death;GO:0048511//rhythmic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|311245232|ref|XP_001925065.2|/0/PREDICTED: PH domain leucine-rich repeat-containing protein phosphatase 1 [Sus scrofa]
gnl|UG|Ssc#S58312493	0	0	7	2	7	2.1	"PREDICTED: Sus scrofa LYR motif-containing protein 7-like (LOC100519080), mRNA /cds=p(38,352) /gb=XM_003123908 /gi=311250095 /ug=Ssc.21146 /len=1043"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311250096|ref|XP_003123956.1|/4.23269e-49/PREDICTED: LYR motif-containing protein 7-like [Sus scrofa]
gnl|UG|Ssc#S46878365	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa ADAM metallopeptidase with thrombospondin type 1 motif, 7 (ADAMTS7), mRNA /cds=p(1,3768) /gb=XM_001925226 /gi=311260606 /ug=Ssc.19385 /len=4002"	GO:0005576//extracellular region;GO:0044464//cell part	GO:0046872//metal ion binding;GO:0070011	GO:0019538//protein metabolic process	gi|311260607|ref|XP_001925261.2|/0/PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 7 [Sus scrofa]
gnl|UG|Ssc#S58305762	3	0.86	0	0	5	1.5	"PREDICTED: Sus scrofa growth arrest-specific protein 1-like (LOC100516459), mRNA /cds=p(14,1063) /gb=XM_003130636 /gi=311265498 /ug=Ssc.21626 /len=2388"	GO:0031225//anchored to membrane	GO:0005488//binding	GO:0040007//growth;GO:0030326//embryonic limb morphogenesis;GO:0008285//negative regulation of cell proliferation;GO:0008284//positive regulation of cell proliferation;GO:0001654//eye development;GO:0006915//apoptosis;GO:0007090//regulation of S phase of mitotic cell cycle;GO:0048869;GO:0006935//chemotaxis;GO:0042471//ear morphogenesis;GO:0009953//dorsal/ventral pattern formation;GO:0008589//regulation of smoothened signaling pathway;GO:0048704//embryonic skeletal system morphogenesis	gi|311265499|ref|XP_003130684.1|/6.69527e-111/PREDICTED: growth arrest-specific protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58313966	6	1.73	2	0.57	3	0.9	"PREDICTED: Sus scrofa low density lipoprotein receptor-related protein 5 (LRP5), mRNA /cds=p(1,4869) /gb=XM_003122446 /gi=311247094 /ug=Ssc.26207 /len=5065"	GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0004888//transmembrane receptor activity;GO:0005215//transporter activity;GO:0005515//protein binding	"GO:0030326//embryonic limb morphogenesis;GO:0006006//glucose metabolic process;GO:0006915//apoptosis;GO:0007369//gastrulation;GO:0008284//positive regulation of cell proliferation;GO:0044093;GO:0030111//regulation of Wnt receptor signaling pathway;GO:0048534;GO:0055092//sterol homeostasis;GO:0001667//ameboidal cell migration;GO:0016125//sterol metabolic process;GO:0012502//induction of programmed cell death;GO:0045597//positive regulation of cell differentiation;GO:0001649//osteoblast differentiation;GO:0006469//negative regulation of protein kinase activity;GO:0007088//regulation of mitosis;GO:0048514//blood vessel morphogenesis;GO:0048754//branching morphogenesis of a tube;GO:0003002//regionalization;GO:0008015//blood circulation;GO:0016192//vesicle-mediated transport;GO:0050796//regulation of insulin secretion;GO:0019827//stem cell maintenance;GO:0034103//regulation of tissue remodeling;GO:0060562;GO:0006355//regulation of transcription, DNA-dependent"	gi|311247095|ref|XP_003122494.1|/0/PREDICTED: low-density lipoprotein receptor-related protein 5-like [Sus scrofa]
gnl|UG|Ssc#S23213517	295	84.93	764	218.39	545	163.79	"Sus scrofa clone Clu_1225.scr.msk.p1.Contig4, mRNA sequence /gb=AY609460 /gi=52350745 /ug=Ssc.80889 /len=1655"	GO:0043231//intracellular membrane-bounded organelle;GO:0005924//cell-substrate adherens junction;GO:0015629//actin cytoskeleton	GO:0008092//cytoskeletal protein binding;GO:0005198//structural molecule activity	GO:0030041//actin filament polymerization;GO:0008064//regulation of actin polymerization or depolymerization	gi|114583279|ref|XP_001154791.1|/0/PREDICTED: actin related protein 2/3 complex subunit 2 isoform 2 [Pan troglodytes]
gnl|UG|Ssc#S58314351	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa structural maintenance of chromosomes 2 (SMC2), mRNA /cds=p(209,1921) /gb=XM_003122050 /gi=311246141 /ug=Ssc.83765 /len=1921"	-	-	-	-
gnl|UG|Ssc#S46881172	18	5.18	22	6.29	9	2.7	"PREDICTED: Sus scrofa prostaglandin E synthase 2 (PTGES2), mRNA /cds=p(31,1149) /gb=XM_001927936 /gi=311246535 /ug=Ssc.84270 /len=1702"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding;GO:0016860//intramolecular oxidoreductase activity;GO:0015036//disulfide oxidoreductase activity	"GO:0006810//transport;GO:0006693//prostaglandin metabolic process;GO:0019725//cellular homeostasis;GO:0006351//transcription, DNA-dependent"	gi|194033639|ref|XP_001927971.1|/1.506e-167/PREDICTED: prostaglandin E synthase 2 [Sus scrofa]
gnl|UG|Ssc#S46879682	21	6.05	16	4.57	12	3.61	"PREDICTED: Sus scrofa kinesin-associated protein 3 (KIFAP3), mRNA /cds=p(100,2481) /gb=XM_001927760 /gi=311253863 /ug=Ssc.8250 /len=3210"	GO:0005815//microtubule organizing center;GO:0000228//nuclear chromosome;GO:0005871//kinesin complex;GO:0005819//spindle	GO:0008092//cytoskeletal protein binding;GO:0005088//Ras guanyl-nucleotide exchange factor activity	GO:0007265//Ras protein signal transduction;GO:0022409//positive regulation of cell-cell adhesion;GO:0047496//vesicle transport along microtubule;GO:0033036;GO:0007599//hemostasis;GO:0065003;GO:0008283//cell proliferation	gi|194036773|ref|XP_001927795.1|/0/PREDICTED: kinesin-associated protein 3 [Sus scrofa]
gnl|UG|Ssc#S35170335	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10090D06, expressed in ovary /gb=AK235526 /gi=115549504 /ug=Ssc.4368 /len=2082"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0043500;GO:0019941//modification-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation	gi|113205802|ref|NP_001038053.1|/0/F-box only protein 32 [Sus scrofa]
gnl|UG|Ssc#S23213258	8	2.3	7	2	3	0.9	"Sus scrofa clone Clu_29461.scr.msk.p1.Contig2, mRNA sequence /gb=AY609750 /gi=52351318 /ug=Ssc.79654 /len=1513"	-	-	-	-
gnl|UG|Ssc#S58309224	64	18.43	31	8.86	42	12.62	"PREDICTED: Sus scrofa multiple epidermal growth factor-like domains protein 8-like (LOC100516083), mRNA /cds=p(1,5133) /gb=XM_003127177 /gi=311257642 /ug=Ssc.94490 /len=5133"	-	-	-	gi|311257643|ref|XP_003127225.1|/0/PREDICTED: multiple epidermal growth factor-like domains protein 8-like [Sus scrofa]
gnl|UG|Ssc#S46877384	6	1.73	0	0	7	2.1	"PREDICTED: Sus scrofa elongator complex protein 3-like (LOC100156764), mRNA /cds=p(1,1644) /gb=XM_001928625 /gi=311270403 /ug=Ssc.64334 /len=1679"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0004468//lysine N-acetyltransferase activity;GO:0051540;GO:0003711//transcription elongation regulator activity;GO:0019887//protein kinase regulator activity	"GO:0006355//regulation of transcription, DNA-dependent;GO:0016570//histone modification;GO:0016310//phosphorylation"	gi|194041549|ref|XP_001928660.1|/0/PREDICTED: elongator complex protein 3-like [Sus scrofa]
gnl|UG|Ssc#S56673054	9	2.59	0	0	4	1.2	"Sus scrofa glycogen synthase 1 (GYS1) mRNA, complete cds /cds=p(147,2360) /gb=GQ845034 /gi=306029975 /ug=Ssc.2291 /len=3573"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0048029//monosaccharide binding;GO:0035251//UDP-glucosyltransferase activity	GO:0048513//organ development;GO:0005977//glycogen metabolic process;GO:0019318//hexose metabolic process	"gi|306782595|ref|NP_001182437.1|/0/glycogen [starch] synthase, muscle [Sus scrofa]"
gnl|UG|Ssc#S46880033	13	3.74	3	0.86	14	4.21	"PREDICTED: Sus scrofa UPF0469 protein KIAA0907-like (LOC100157149), mRNA /cds=p(1,1851) /gb=XM_001928648 /gi=311254136 /ug=Ssc.1090 /len=2912"	-	-	-	gi|194036039|ref|XP_001928683.1|/0/PREDICTED: UPF0469 protein KIAA0907-like [Sus scrofa]
gnl|UG|Ssc#S35166160	78	22.46	5	1.43	42	12.62	"Sus scrofa mRNA, clone:THY010203B05, expressed in thymus /gb=AK239765 /gi=115553578 /ug=Ssc.21464 /len=1542"	GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding	GO:0006626//protein targeting to mitochondrion;GO:0019538//protein metabolic process	gi|311264699|ref|XP_003130289.1|/0/PREDICTED: mitochondrial-processing peptidase subunit beta-like [Sus scrofa]
gnl|UG|Ssc#S20938292	0	0	0	0	2	0.6	"AJ650015 CSEQRAN19 Sus scrofa cDNA clone C0003274_C08, mRNA sequence /clone=C0003274_C08 /gb=AJ650015 /gi=49326860 /ug=Ssc.85641 /len=495"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003723//RNA binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0008213"	"gi|149020494|gb|EDL78299.1|/4.21626e-71/interleukin enhancer binding factor 3, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S35173699	322	92.71	149	42.59	244	73.33	"Sus scrofa mRNA, clone:UTR010060E11, expressed in uterus /gb=AK240374 /gi=115546136 /ug=Ssc.53860 /len=3206"	GO:0032991//macromolecular complex;GO:0044444//cytoplasmic part	"GO:0017111//nucleoside-triphosphatase activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561"	GO:0006412//translation;GO:0009207	gi|149445919|ref|XP_001515708.1|/0/PREDICTED: similar to eukaryotic translation elongation factor 2 [Ornithorhynchus anatinus]
gnl|UG|Ssc#S58311324	2	0.58	7	2	3	0.9	"PREDICTED: Sus scrofa calcineurin subunit B type 1-like (LOC100516604), mRNA /cds=p(1,297) /gb=XM_003125081 /gi=311252494 /ug=Ssc.90251 /len=674"	GO:0008287//protein serine/threonine phosphatase complex;GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0004722//protein serine/threonine phosphatase activity;GO:0005515//protein binding	GO:0001525//angiogenesis;GO:0006917//induction of apoptosis;GO:0042991//transcription factor import into nucleus;GO:0030855//epithelial cell differentiation;GO:0048513//organ development;GO:0006464//protein modification process;GO:0000904//cell morphogenesis involved in differentiation	gi|311252495|ref|XP_003125129.1|/2.60489e-49/PREDICTED: calcineurin subunit B type 1-like [Sus scrofa]
gnl|UG|Ssc#S55319627	16	4.61	8	2.29	4	1.2	"Sus scrofa mRNA, clone:LVRM10123G12, expressed in liver /gb=AK346264 /gi=288785257 /ug=Ssc.83965 /len=2039"	-	-	-	"gi|296480286|gb|DAA22401.1|/0/asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog [Bos taurus]"
gnl|UG|Ssc#S51749231	83	23.9	46	13.15	62	18.63	"Sus scrofa TOB1 protein mRNA, complete cds /cds=p(421,1461) /gb=EU585747 /gi=190684003 /ug=Ssc.5620 /len=2260"	GO:0044424//intracellular part	"GO:0030674//protein binding, bridging;GO:0003712//transcription cofactor activity"	GO:0045596//negative regulation of cell differentiation;GO:0006606//protein import into nucleus;GO:0030509//BMP signaling pathway;GO:0008283//cell proliferation	gi|178057318|ref|NP_001116677.1|/5.27325e-150/protein Tob1 [Sus scrofa]
gnl|UG|Ssc#S20936135	28	8.06	4	1.14	29	8.72	"AJ647858 CSEQRAN19 Sus scrofa cDNA clone C0003260_O07, mRNA sequence /clone=C0003260_O07 /gb=AJ647858 /gi=49324703 /ug=Ssc.74086 /len=540"	-	-	-	"gi|149055138|gb|EDM06955.1|/1.15339e-97/meteorin, glial cell differentiation regulator-like, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S58309512	5	1.44	5	1.43	0	0	"PREDICTED: Sus scrofa transducin-like enhancer protein 2-like (LOC100513797), mRNA /cds=p(1,1731) /gb=XM_003126893 /gi=311257056 /ug=Ssc.77423 /len=1971"	-	GO:0005488//binding;GO:0003712//transcription cofactor activity	GO:0030178//negative regulation of Wnt receptor signaling pathway	gi|311257057|ref|XP_003126941.1|/0/PREDICTED: transducin-like enhancer protein 2-like [Sus scrofa]
gnl|UG|Ssc#S18387006	16	4.61	8	2.29	11	3.31	"938392 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK467119 /gi=40838396 /ug=Ssc.58686 /len=827"	-	-	-	-
gnl|UG|Ssc#S20938255	23	6.62	7	2	18	5.41	"AJ649978 CSEQRAN19 Sus scrofa cDNA clone C0003274_A16, mRNA sequence /clone=C0003274_A16 /gb=AJ649978 /gi=49326823 /ug=Ssc.85636 /len=523"	GO:0000315//organellar large ribosomal subunit;GO:0043231//intracellular membrane-bounded organelle	GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|55741549|ref|NP_001006986.1|/1.77647e-100/39S ribosomal protein L13, mitochondrial [Rattus norvegicus]"
gnl|UG|Ssc#S58310060	48	13.82	7	2	37	11.12	"PREDICTED: Sus scrofa ubiquitin specific peptidase 15 (USP15), mRNA /cds=p(39,2375) /gb=XM_003126341 /gi=311255832 /ug=Ssc.44421 /len=2375"	GO:0043231//intracellular membrane-bounded organelle	GO:0019783//small conjugating protein-specific protease activity;GO:0004175//endopeptidase activity;GO:0005488//binding;GO:0016790//thiolester hydrolase activity	GO:0070646;GO:0019941//modification-dependent protein catabolic process	gi|311255833|ref|XP_003126389.1|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Sus scrofa]
gnl|UG|Ssc#S31112220	0	0	2	0.57	0	0	"1528287 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY416058 /gi=87217361 /ug=Ssc.89192 /len=648"	GO:0044421//extracellular region part;GO:0031982//vesicle	GO:0046872//metal ion binding;GO:0004175//endopeptidase activity;GO:0005102//receptor binding	GO:0044260;GO:0048731;GO:0019538//protein metabolic process;GO:0016337//cell-cell adhesion;GO:0051094//positive regulation of developmental process	gi|194041441|ref|XP_001927808.1|/2.89768e-47/PREDICTED: bone morphogenetic protein 1 [Sus scrofa]
gnl|UG|Ssc#S58308280	4	1.15	0	0	3	0.9	"PREDICTED: Sus scrofa putative uncharacterized zinc finger protein 814-like (LOC100514469), mRNA /cds=p(212,3487) /gb=XM_003128120 /gi=311259572 /ug=Ssc.31712 /len=3650"	-	-	-	gi|311259573|ref|XP_003128168.1|/0/PREDICTED: putative uncharacterized zinc finger protein 814-like [Sus scrofa]
gnl|UG|Ssc#S19545219	5	1.44	0	0	4	1.2	"950596 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN161315 /gi=46175745 /ug=Ssc.85302 /len=665"	-	GO:0005488//binding	-	gi|114663541|ref|XP_523412.2|/3.10423e-34/PREDICTED: hypothetical protein [Pan troglodytes]
gnl|UG|Ssc#S58303285	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa DNA excision repair protein ERCC-6-like (LOC100521522), mRNA /cds=p(1,4446) /gb=XM_003133108 /gi=311271510 /ug=Ssc.26348 /len=5323"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0000267//cell fraction	"GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0005515//protein binding;GO:0004386//helicase activity;GO:0032559"	"GO:0006289//nucleotide-excision repair;GO:0009416//response to light stimulus;GO:0006354//transcription elongation, DNA-dependent"	gi|311271511|ref|XP_003133156.1|/0/PREDICTED: DNA excision repair protein ERCC-6-like [Sus scrofa]
gnl|UG|Ssc#S55327575	11	3.17	27	7.72	37	11.12	"Sus scrofa N-acetyltransferase 9 (NAT9) mRNA, complete cds /cds=p(18,638) /gb=GU373685 /gi=285818423 /ug=Ssc.13137 /len=1045"	GO:0032991//macromolecular complex	GO:0016407//acetyltransferase activity	-	gi|305855053|ref|NP_001182289.1|/8.94451e-116/N-acetyltransferase 9 [Sus scrofa]
gnl|UG|Ssc#S46878503	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa leucine rich repeat and fibronectin type III domain containing 2 (LRFN2), mRNA /cds=p(1,2376) /gb=XM_001928770 /gi=194039217 /ug=Ssc.93786 /len=2376"	GO:0044425//membrane part;GO:0005886//plasma membrane	GO:0005488//binding	-	gi|194039218|ref|XP_001928805.1|/0/PREDICTED: leucine-rich repeat and fibronectin type-III domain-containing protein 2 [Sus scrofa]
gnl|UG|Ssc#S18557380	0	0	0	0	2	0.6	"BX926031 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0021.h.12 5prim, mRNA sequence /clone=scan0021.h.12 /clone_end=5' /gb=BX926031 /gi=90244248 /ug=Ssc.38167 /len=848"	-	-	-	gi|74138389|dbj|BAE38046.1|/3.4558e-13/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S55323934	7	2.02	0	0	11	3.31	"Sus scrofa mRNA, clone:AMP010028B08, expressed in alveolar macrophages /gb=AK343727 /gi=288780938 /ug=Ssc.5034 /len=2675"	GO:0031224//intrinsic to membrane;GO:0005764//lysosome;GO:0043234//protein complex;GO:0030133//transport vesicle;GO:0005770//late endosome;GO:0030666//endocytic vesicle membrane	GO:0000149//SNARE binding	GO:0007041//lysosomal transport;GO:0006906//vesicle fusion;GO:0006909//phagocytosis;GO:0002283;GO:0034196//acylglycerol transport;GO:0006887//exocytosis;GO:0002278;GO:0048193//Golgi vesicle transport	gi|74009232|ref|XP_855489.1|/6.24478e-113/PREDICTED: similar to Synaptobrevin-like protein 1 [Canis familiaris]
gnl|UG|Ssc#S20116737	2	0.58	0	0	0	0	"Sus scrofa calpain 1, (mu/I) large subunit (CAPN1), mRNA /cds=p(94,2046) /gb=NM_213972 /gi=47522771 /ug=Ssc.42541 /len=3528"	GO:0016020//membrane;GO:0044424//intracellular part	GO:0046872//metal ion binding;GO:0004197//cysteine-type endopeptidase activity	GO:0019538//protein metabolic process;GO:0008283//cell proliferation	gi|47522772|ref|NP_999137.1|/0/calpain-1 catalytic subunit [Sus scrofa]
gnl|UG|Ssc#S19543409	0	0	0	0	0	0	"948142 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN159109 /gi=46173539 /ug=Ssc.9450 /len=901"	-	-	-	-
gnl|UG|Ssc#S58313946	6	1.73	3	0.86	6	1.8	"PREDICTED: Sus scrofa membrane-associated phosphatidylinositol transfer protein 1-like (LOC100510888), mRNA /cds=p(1,3735) /gb=XM_003122455 /gi=311247135 /ug=Ssc.28357 /len=3964"	GO:0005626//insoluble fraction;GO:0000139//Golgi membrane;GO:0032155	GO:0043169//cation binding;GO:0005548//phospholipid transporter activity	GO:0007417//central nervous system development;GO:0006810//transport;GO:0044238//primary metabolic process;GO:0007165//signal transduction	gi|311247136|ref|XP_003122503.1|/0/PREDICTED: LOW QUALITY PROTEIN: membrane-associated phosphatidylinositol transfer protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58312334	6	1.73	2	0.57	5	1.5	"PREDICTED: Sus scrofa leucyl-tRNA synthetase (LARS), mRNA /cds=p(123,3653) /gb=XM_003124069 /gi=311250425 /ug=Ssc.30957 /len=4018"	GO:0044444//cytoplasmic part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|311250426|ref|XP_003124117.1|/0/PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]"
gnl|UG|Ssc#S35169435	43	12.38	40	11.43	37	11.12	"Sus scrofa mRNA, clone:THY010015F01, expressed in thymus /gb=AK238669 /gi=115550404 /ug=Ssc.78969 /len=1552"	GO:0005815//microtubule organizing center	-	"GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|37181638|gb|AAQ88628.1|/2.72643e-11/KTIS8219 [Homo sapiens]
gnl|UG|Ssc#S58314559	138	39.73	71	20.3	129	38.77	"PREDICTED: Sus scrofa protein phosphatase 1A-like (LOC100518529), mRNA /cds=p(26,1174) /gb=XM_003121843 /gi=311245604 /ug=Ssc.5732 /len=2353"	GO:0034704//calcium channel complex;GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0042995//cell projection;GO:0044444//cytoplasmic part	GO:0004721//phosphoprotein phosphatase activity;GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0060089	"GO:0016055//Wnt receptor signaling pathway;GO:0006355//regulation of transcription, DNA-dependent;GO:0006796//phosphate metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0022402//cell cycle process;GO:0006464//protein modification process"	"gi|194225066|ref|XP_001497700.2|/0/PREDICTED: similar to protein phosphatase 1A, magnesium dependent, alpha isoform [Equus caballus]"
gnl|UG|Ssc#S46879892	28	8.06	9	2.57	46	13.82	"PREDICTED: Sus scrofa B-cell CLL/lymphoma 9 (BCL9), mRNA /cds=p(1,4281) /gb=XM_001928425 /gi=311254448 /ug=Ssc.1302 /len=5523"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0007179//transforming growth factor beta receptor signaling pathway	gi|194036334|ref|XP_001928460.1|/0/PREDICTED: b-cell CLL/lymphoma 9 protein [Sus scrofa]
gnl|UG|Ssc#S35174102	7	2.02	7	2	5	1.5	"Sus scrofa mRNA, clone:OVR010015F05, expressed in ovary /gb=AK234166 /gi=115545733 /ug=Ssc.48540 /len=1488"	GO:0031981//nuclear lumen;GO:0005657//replication fork	GO:0016462//pyrophosphatase activity;GO:0032559;GO:0003677//DNA binding	GO:0006261//DNA-dependent DNA replication;GO:0048017//inositol lipid-mediated signaling;GO:0051320;GO:0007050//cell cycle arrest;GO:0009207;GO:0006289//nucleotide-excision repair;GO:0000723//telomere maintenance	gi|311269763|ref|XP_003132629.1|/0/PREDICTED: replication factor C subunit 4-like [Sus scrofa]
gnl|UG|Ssc#S35167447	5	1.44	7	2	0	0	"Sus scrofa mRNA, clone:AMP010015A05, expressed in alveolar macrophage /gb=AK230602 /gi=115552292 /ug=Ssc.45678 /len=2137"	GO:0043231//intracellular membrane-bounded organelle	"GO:0046983//protein dimerization activity;GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups"	GO:0006720//isoprenoid metabolic process;GO:0051262//protein tetramerization;GO:0032501//multicellular organismal process;GO:0006743//ubiquinone metabolic process	gi|264681462|ref|NP_001161125.1|/0/decaprenyl-diphosphate synthase subunit 2 [Sus scrofa]
gnl|UG|Ssc#S55275993	2	0.58	0	0	0	0	"FS683986 full-length enriched swine cDNA library, adult longissimus Sus scrofa cDNA clone MLTL10074B01 5', mRNA sequence /clone=MLTL10074B01 /clone_end=5' /gb=FS683986 /gi=288277321 /ug=Ssc.78081 /len=689"	-	-	-	-
gnl|UG|Ssc#S22415859	176	50.67	176	50.31	297	89.26	"Sus scrofa transforming growth factor, beta 1 (TGFB1), mRNA /cds=p(906,2078) /gb=NM_214015 /gi=55741796 /ug=Ssc.76 /len=3206"	GO:0031091//platelet alpha granule;GO:0044431//Golgi apparatus part;GO:0043005//neuron projection;GO:0031012//extracellular matrix;GO:0044297//cell body	GO:0005160//transforming growth factor beta receptor binding;GO:0042802//identical protein binding;GO:0030528//transcription regulator activity;GO:0046983//protein dimerization activity	GO:0001837//epithelial to mesenchymal transition;GO:0009206;GO:0009628//response to abiotic stimulus;GO:0001934//positive regulation of protein phosphorylation;GO:0030217//T cell differentiation;GO:0090077;GO:0006814//sodium ion transport;GO:0045806//negative regulation of endocytosis;GO:0006915//apoptosis;GO:0010596//negative regulation of endothelial cell migration;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0007050//cell cycle arrest;GO:0050863//regulation of T cell activation;GO:0008366//axon ensheathment;GO:0030282//bone mineralization;GO:0051414//response to cortisol stimulus;GO:0008284//positive regulation of cell proliferation;GO:0043551//regulation of phosphatidylinositol 3-kinase activity;GO:0045596//negative regulation of cell differentiation;GO:0016573//histone acetylation;GO:0042098//T cell proliferation;GO:0051149//positive regulation of muscle cell differentiation;GO:0001819//positive regulation of cytokine production;GO:0007096//regulation of exit from mitosis;GO:0008285//negative regulation of cell proliferation;GO:0034405//response to fluid shear stress;GO:0003006//developmental process involved in reproduction;GO:0060688//regulation of morphogenesis of a branching structure;GO:0002719;GO:0014706//striated muscle tissue development;GO:0002246//wound healing involved in inflammatory response;GO:0010523//negative regulation of calcium ion transport into cytosol;GO:0060363//cranial suture morphogenesis;GO:0010595//positive regulation of endothelial cell migration;GO:0046730;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0060602//branch elongation of an epithelium;GO:0032103;GO:0006260//DNA replication;GO:0006470//protein dephosphorylation;GO:0016575//histone deacetylation;GO:0002507//tolerance induction;GO:0010761//fibroblast migration;GO:0043627//response to estrogen stimulus;GO:0042476//odontogenesis;GO:0009746;GO:0001658//branching involved in ureteric bud morphogenesis;GO:0030323//respiratory tube development;GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0001773//myeloid dendritic cell activation;GO:0007405//neuroblast proliferation;GO:0007276//gamete generation;GO:0051091//positive regulation of transcription factor activity;GO:0016049//cell growth;GO:0007162//negative regulation of cell adhesion;GO:0033273//response to vitamin;GO:0034330;GO:0045830//positive regulation of isotype switching;GO:0006887//exocytosis;GO:0002260//lymphocyte homeostasis;GO:0000082//G1/S transition of mitotic cell cycle;GO:0050832//defense response to fungus;GO:0010557;GO:0070848//response to growth factor stimulus;GO:0012502//induction of programmed cell death;GO:0009057//macromolecule catabolic process;GO:0007431//salivary gland development;GO:0043405//regulation of MAP kinase activity;GO:0033993//response to lipid;GO:0042307//positive regulation of protein import into nucleus;GO:0007599//hemostasis	gi|55741797|ref|NP_999180.1|/0/transforming growth factor beta-1 precursor [Sus scrofa]
gnl|UG|Ssc#S35167913	12	3.45	2	0.57	6	1.8	"Sus scrofa mRNA, clone:OVRM10166C10, expressed in ovary /gb=AK236233 /gi=115551826 /ug=Ssc.7500 /len=1255"	GO:0031090//organelle membrane;GO:0005635//nuclear envelope;GO:0042598//vesicular fraction	GO:0046872//metal ion binding;GO:0042802//identical protein binding	GO:0010038//response to metal ion;GO:0006917//induction of apoptosis	gi|291413981|ref|XP_002723239.1|/2.29935e-87/PREDICTED: programmed cell death 6-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S35168489	2	0.58	0	0	3	0.9	"Sus scrofa mRNA, clone:LVR010102G12, expressed in liver /gb=AK232634 /gi=115551201 /ug=Ssc.49056 /len=2200"	GO:0031224//intrinsic to membrane	GO:0005488//binding	-	gi|149725742|ref|XP_001501028.1|/6.45823e-137/PREDICTED: similar to ORAI calcium release-activated calcium modulator 3 [Equus caballus]
gnl|UG|Ssc#S46879694	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1, transcript variant 1 (PCMTD1), mRNA /cds=p(1,1071) /gb=XM_001928875 /gi=311253842 /ug=Ssc.33382 /len=1463"	GO:0044424//intracellular part	GO:0008757//S-adenosylmethionine-dependent methyltransferase activity	GO:0006730//one-carbon metabolic process;GO:0008213	gi|194036749|ref|XP_001928910.1|/0/PREDICTED: protein-L-isoaspartate O-methyltransferase domain-containing protein 1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S20939576	959	276.1	1973	563.98	372	111.8	"AJ651299 CSEQRAN19 Sus scrofa cDNA clone C0003277_P05, mRNA sequence /clone=C0003277_P05 /gb=AJ651299 /gi=49333744 /ug=Ssc.74167 /len=560"	GO:0035097//histone methyltransferase complex;GO:0043005//neuron projection;GO:0043232;GO:0044444//cytoplasmic part;GO:0043189//H4/H2A histone acetyltransferase complex	GO:0008092//cytoskeletal protein binding;GO:0019900//kinase binding;GO:0005198//structural molecule activity;GO:0032559	GO:0010038//response to metal ion;GO:0006935//chemotaxis;GO:0045216//cell-cell junction organization;GO:0007599//hemostasis;GO:0006458//'de novo' protein folding	gi|311141816|dbj|BAJ24836.1|/1.05741e-99/beta-actin [Apodemus speciosus]
gnl|UG|Ssc#S35169332	33	9.5	7	2	20	6.01	"Sus scrofa mRNA, clone:LVR010021H04, expressed in liver /gb=AK232337 /gi=115550507 /ug=Ssc.54737 /len=1993"	-	"GO:0046914//transition metal ion binding;GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;GO:0019842//vitamin binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	GO:0008152//metabolic process	gi|149699558|ref|XP_001492988.1|/0/PREDICTED: similar to 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1 (Termination and polyadenylation 1 homolog) [Equus caballus]
gnl|UG|Ssc#S58309430	24	6.91	5	1.43	14	4.21	"PREDICTED: Sus scrofa ADP-ribosylation factor-like protein 2-binding protein-like, transcript variant 1 (LOC100515548), mRNA /cds=p(291,782) /gb=XM_003126968 /gi=311257224 /ug=Ssc.16693 /len=2157"	-	-	-	-
gnl|UG|Ssc#S46877261	7	2.02	0	0	7	2.1	"PREDICTED: Sus scrofa MMS19 nucleotide excision repair homolog (S. cerevisiae) (MMS19), mRNA /cds=p(25,3144) /gb=XM_001928911 /gi=311271702 /ug=Ssc.27378 /len=3527"	GO:0005667//transcription factor complex;GO:0005819//spindle	GO:0003712//transcription cofactor activity;GO:0032947//protein complex scaffold;GO:0035258//steroid hormone receptor binding	"GO:0006281//DNA repair;GO:0009719;GO:0006355//regulation of transcription, DNA-dependent;GO:0007165//signal transduction"	gi|311271703|ref|XP_001928946.2|/0/PREDICTED: LOW QUALITY PROTEIN: MMS19 nucleotide excision repair protein homolog [Sus scrofa]
gnl|UG|Ssc#S46876318	402	115.74	610	174.37	213	64.01	"PREDICTED: Sus scrofa basic leucine zipper and W2 domains 1 (BZW1), mRNA /cds=p(140,1399) /gb=XM_001924488 /gi=194043745 /ug=Ssc.52101 /len=4373"	GO:0044424//intracellular part	GO:0005488//binding	"GO:0006351//transcription, DNA-dependent"	gi|40789056|dbj|BAA02795.2|/0/KIAA0005 [Homo sapiens]
gnl|UG|Ssc#S35164703	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:UTR010042B08, expressed in uterus /gb=AK240222 /gi=115555023 /ug=Ssc.11138 /len=1644"	GO:0043232;GO:0005924//cell-substrate adherens junction;GO:0044444//cytoplasmic part	GO:0060089;GO:0004713//protein tyrosine kinase activity;GO:0019904//protein domain specific binding;GO:0032559	GO:0006915//apoptosis;GO:0006935//chemotaxis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007599//hemostasis;GO:0006464//protein modification process	gi|297460734|ref|XP_001787424.2|/2.2157e-83/PREDICTED: PTK2 protein tyrosine kinase 2 [Bos taurus]
gnl|UG|Ssc#S58308632	73	21.02	157	44.88	67	20.14	"PREDICTED: Sus scrofa MARCKS-related protein-like, transcript variant 2 (LOC100518914), mRNA /cds=p(202,831) /gb=XM_003127758 /gi=311258851 /ug=Ssc.6562 /len=1594"	GO:0016020//membrane	-	GO:0006810//transport;GO:0008283//cell proliferation	gi|311258852|ref|XP_003127806.1|/1.12924e-76/PREDICTED: MARCKS-related protein-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S20116386	108	31.09	65	18.58	76	22.84	"Sus scrofa protein kinase (cAMP-dependent, catalytic) inhibitor alpha (PKIA), mRNA /cds=p(49,279) /gb=NM_214204 /gi=47523491 /ug=Ssc.526 /len=3702"	GO:0043231//intracellular membrane-bounded organelle;GO:0000267//cell fraction	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0030291//protein serine/threonine kinase inhibitor activity"	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0033673//negative regulation of kinase activity;GO:0006606//protein import into nucleus;GO:0000086//G2/M transition of mitotic cell cycle	gi|5803127|ref|NP_006814.1|/3.16794e-33/cAMP-dependent protein kinase inhibitor alpha [Homo sapiens]
gnl|UG|Ssc#S35169590	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10109F03, expressed in ovary /gb=AK235728 /gi=115550249 /ug=Ssc.16412 /len=2649"	-	-	-	-
gnl|UG|Ssc#S58301353	0	0	0	0	0	0	"PREDICTED: Sus scrofa lysine-specific demethylase 6A-like (LOC100523831), mRNA /cds=p(1,1413) /gb=XM_003135062 /gi=311276196 /ug=Ssc.85206 /len=1413"	GO:0034708;GO:0043231//intracellular membrane-bounded organelle	"GO:0043169//cation binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	GO:0034968//histone lysine methylation	gi|311276197|ref|XP_003135110.1|/0/PREDICTED: lysine-specific demethylase 6A-like [Sus scrofa]
gnl|UG|Ssc#S58301468	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa ribose-phosphate pyrophosphokinase 2-like, transcript variant 1 (LOC100510993), mRNA /cds=p(144,1100) /gb=XM_003134927 /gi=311275923 /ug=Ssc.4521 /len=3619"	GO:0032991//macromolecular complex;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0016778;GO:0046872//metal ion binding;GO:0042802//identical protein binding;GO:0032561;GO:0030246//carbohydrate binding;GO:0032559	GO:0006220//pyrimidine nucleotide metabolic process;GO:0006796//phosphate metabolic process;GO:0009887//organ morphogenesis;GO:0046390//ribose phosphate biosynthetic process;GO:0009168//purine ribonucleoside monophosphate biosynthetic process;GO:0009113//purine base biosynthetic process	gi|34192133|gb|AAH30019.2|/0/PRPS2 protein [Homo sapiens]
gnl|UG|Ssc#S20939361	617	177.64	749	214.1	620	186.33	"AJ651084 CSEQRAN19 Sus scrofa cDNA clone C0003277_D12, mRNA sequence /clone=C0003277_D12 /gb=AJ651084 /gi=49327929 /ug=Ssc.85483 /len=487"	GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0004033//aldo-keto reductase activity	GO:0019852//L-ascorbic acid metabolic process;GO:0006064//glucuronate catabolic process;GO:0006081//cellular aldehyde metabolic process;GO:0019318//hexose metabolic process	gi|13591894|ref|NP_112262.1|/4.98957e-58/alcohol dehydrogenase [NADP+] [Rattus norvegicus]
gnl|UG|Ssc#S55327544	13	3.74	16	4.57	5	1.5	"Sus scrofa frizzled-like protein 2 (FZD2) mRNA, complete cds /cds=p(19,1695) /gb=GU373716 /gi=285818485 /ug=Ssc.18994 /len=1941"	GO:0031224//intrinsic to membrane;GO:0044424//intracellular part;GO:0031253//cell projection membrane	GO:0004888//transmembrane receptor activity;GO:0019904//protein domain specific binding;GO:0046983//protein dimerization activity	"GO:0031016//pancreas development;GO:0030801;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0001715//ectodermal cell fate specification;GO:0044093;GO:0045137//development of primary sexual characteristics;GO:0007162//negative regulation of cell adhesion;GO:0035019//somatic stem cell maintenance;GO:0048870//cell motility;GO:0035411//catenin import into nucleus;GO:0007187//G-protein signaling, coupled to cyclic nucleotide second messenger;GO:0010927;GO:0003306//Wnt receptor signaling pathway involved in heart development;GO:0032870//cellular response to hormone stimulus;GO:0050679//positive regulation of epithelial cell proliferation;GO:0016310//phosphorylation;GO:0030217//T cell differentiation;GO:0003382//epithelial cell morphogenesis;GO:0060411//cardiac septum morphogenesis;GO:0007606//sensory perception of chemical stimulus;GO:0070848//response to growth factor stimulus;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0042472//inner ear morphogenesis;GO:0007417//central nervous system development;GO:0003143//embryonic heart tube morphogenesis;GO:0033280//response to vitamin D;GO:0007154//cell communication;GO:0060071//Wnt receptor signaling pathway, planar cell polarity pathway;GO:0009855//determination of bilateral symmetry;GO:0017145//stem cell division;GO:0051480//cytosolic calcium ion homeostasis"	gi|305855142|ref|NP_001182268.1|/0/frizzled-2 [Sus scrofa]
gnl|UG|Ssc#S55306283	7	2.02	0	0	0	0	"FS704085 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010091H12 5', mRNA sequence /clone=PST010091H12 /clone_end=5' /gb=FS704085 /gi=288311543 /ug=Ssc.38714 /len=901"	GO:0031981//nuclear lumen;GO:0000152//nuclear ubiquitin ligase complex;GO:0044444//cytoplasmic part	GO:0019787//small conjugating protein ligase activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0007050//cell cycle arrest;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	"gi|119625457|gb|EAX05052.1|/1.18011e-110/anaphase promoting complex subunit 10, isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S20457833	3	0.86	0	0	2	0.6	"UMC-pgvo2-006-d08 Germinal-Vesicle-Oocyte pgvo Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN031727 /gi=48726263 /ug=Ssc.82386 /len=355"	-	-	-	gi|301768897|ref|XP_002919865.1|/1.05266e-40/PREDICTED: WD repeat-containing protein mio-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58313251	9	2.59	2	0.57	0	0	"PREDICTED: Sus scrofa mucolipin 1 (MCOLN1), mRNA /cds=p(135,1877) /gb=XM_003123144 /gi=311248551 /ug=Ssc.3578 /len=2072"	GO:0005764//lysosome;GO:0016021//integral to membrane;GO:0005770//late endosome;GO:0031090//organelle membrane	GO:0005216//ion channel activity;GO:0022890//inorganic cation transmembrane transporter activity	GO:0006875//cellular metal ion homeostasis;GO:0006826//iron ion transport;GO:0070838//divalent metal ion transport;GO:0015031//protein transport	gi|311248552|ref|XP_003123192.1|/0/PREDICTED: mucolipin-1-like [Sus scrofa]
gnl|UG|Ssc#S58305065	61	17.56	29	8.29	56	16.83	"PREDICTED: Sus scrofa protein HEXIM1-like (LOC100520763), mRNA /cds=p(1400,2446) /gb=XM_003131323 /gi=311267051 /ug=Ssc.5567 /len=2828"	GO:0031981//nuclear lumen	GO:0003723//RNA binding;GO:0016538//cyclin-dependent protein kinase regulator activity;GO:0016564//transcription repressor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0048513//organ development;GO:0000079//regulation of cyclin-dependent protein kinase activity	gi|311267052|ref|XP_003131371.1|/1.20403e-146/PREDICTED: protein HEXIM1-like [Sus scrofa]
gnl|UG|Ssc#S55304612	0	0	2	0.57	0	0	"FS703793 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010088B12 5', mRNA sequence /clone=PST010088B12 /clone_end=5' /gb=FS703793 /gi=288310767 /ug=Ssc.93585 /len=824"	GO:0044430//cytoskeletal part;GO:0031982//vesicle;GO:0005635//nuclear envelope	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0030100//regulation of endocytosis;GO:0007166//cell surface receptor linked signaling pathway;GO:0045596//negative regulation of cell differentiation;GO:0009952//anterior/posterior pattern formation;GO:0001944//vasculature development;GO:0043009//chordate embryonic development;GO:0003143//embryonic heart tube morphogenesis;GO:0032446//protein modification by small protein conjugation;GO:0001838//embryonic epithelial tube formation	gi|301753706|ref|XP_002912715.1|/5.3089e-35/PREDICTED: e3 ubiquitin-protein ligase MIB1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58305394	13	3.74	37	10.58	21	6.31	"PREDICTED: Sus scrofa suppressor of G2 allele of SKP1 homolog (LOC100512856), mRNA /cds=p(134,1147) /gb=XM_003131001 /gi=311266333 /ug=Ssc.2594 /len=1599"	"GO:0043234//protein complex;GO:0000775//chromosome, centromeric region"	-	GO:0000087//M phase of mitotic cell cycle	gi|311266334|ref|XP_003131049.1|/5.45159e-180/PREDICTED: suppressor of G2 allele of SKP1 homolog [Sus scrofa]
gnl|UG|Ssc#S18380110	0	0	3	0.86	0	0	"930476 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK460219 /gi=40831500 /ug=Ssc.19485 /len=834"	GO:0044424//intracellular part	GO:0005088//Ras guanyl-nucleotide exchange factor activity	GO:0019222//regulation of metabolic process;GO:0007266//Rho protein signal transduction	gi|73978117|ref|XP_532621.2|/7.85885e-18/PREDICTED: similar to quattro [Canis familiaris]
gnl|UG|Ssc#S29990232	0	0	0	0	0	0	"PDUts2092F02 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2092F02 5' similar to homologue to ref|NM_005886.1| Homo sapiens katanin p80 (WD repeat containing) subunit B 1 (KATNB1), mRNA, mRNA sequence /clone=PDUts2092F02 /clone_end=5' /gb=CX064706 /gi=84140848 /ug=Ssc.80365 /len=624"	GO:0030427//site of polarized growth;GO:0043005//neuron projection;GO:0044297//cell body;GO:0005819//spindle;GO:0005813//centrosome	"GO:0046983//protein dimerization activity;GO:0015631//tubulin binding;GO:0042623//ATPase activity, coupled"	GO:0010975//regulation of neuron projection development;GO:0006886//intracellular protein transport;GO:0008219//cell death;GO:0007019//microtubule depolymerization;GO:0007049//cell cycle	gi|301752954|ref|XP_002912316.1|/1.87692e-56/PREDICTED: LOW QUALITY PROTEIN: katanin p80 WD40-containing subunit B1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35170141	6	1.73	2	0.57	6	1.8	"Sus scrofa mRNA, clone:LNG010059D09, expressed in lung /gb=AK231977 /gi=115549698 /ug=Ssc.5891 /len=1206"	GO:0005815//microtubule organizing center	GO:0005488//binding	GO:0010927	gi|73956168|ref|XP_536657.2|/6.75136e-113/PREDICTED: similar to B9 protein [Canis familiaris]
gnl|UG|Ssc#S58302556	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa triple functional domain protein-like (LOC100519574), mRNA /cds=p(1,1338) /gb=XM_003133844 /gi=311273482 /ug=Ssc.94491 /len=1338"	GO:0044444//cytoplasmic part	GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0004672//protein kinase activity;GO:0032559	GO:0006917//induction of apoptosis;GO:0006935//chemotaxis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009966//regulation of signal transduction;GO:0007266//Rho protein signal transduction;GO:0006464//protein modification process	gi|311273483|ref|XP_003133892.1|/2.16084e-163/PREDICTED: triple functional domain protein-like [Sus scrofa]
gnl|UG|Ssc#S46877675	4	1.15	6	1.72	10	3.01	"PREDICTED: Sus scrofa claudin domain-containing protein 1-like (LOC100154619), mRNA /cds=p(1,1191) /gb=XM_001924716 /gi=311270101 /ug=Ssc.13400 /len=2392"	GO:0031224//intrinsic to membrane	-	-	gi|311270102|ref|XP_001924751.2|/0/PREDICTED: claudin domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58311541	7	2.02	0	0	9	2.7	"PREDICTED: Sus scrofa ashwin-like (LOC100514400), mRNA /cds=p(1,855) /gb=XM_003124863 /gi=311252055 /ug=Ssc.41429 /len=1010"	GO:0043234//protein complex	-	GO:0003002//regionalization;GO:0060061//Spemann organizer formation;GO:0006915//apoptosis;GO:0048598//embryonic morphogenesis	gi|311252056|ref|XP_003124911.1|/5.33084e-110/PREDICTED: ashwin-like [Sus scrofa]
gnl|UG|Ssc#S50198822	0	0	2	0.57	0	0	"susfleck_FC_N_20_D05 SUSFLECK Fat Cell Normalized Sus scrofa cDNA clone 20_D05, mRNA sequence /clone=20_D05 /gb=FD630658 /gi=220996576 /ug=Ssc.34828 /len=783"	GO:0016020//membrane;GO:0044430//cytoskeletal part;GO:0031982//vesicle;GO:0005635//nuclear envelope	GO:0016874//ligase activity;GO:0046872//metal ion binding	GO:0030100//regulation of endocytosis;GO:0007166//cell surface receptor linked signaling pathway;GO:0045596//negative regulation of cell differentiation;GO:0009952//anterior/posterior pattern formation;GO:0001944//vasculature development;GO:0043009//chordate embryonic development;GO:0003143//embryonic heart tube morphogenesis;GO:0001838//embryonic epithelial tube formation	gi|301753706|ref|XP_002912715.1|/3.93632e-146/PREDICTED: e3 ubiquitin-protein ligase MIB1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20116586	2	0.58	0	0	0	0	"Sus scrofa SMAD family member 3 (SMAD3), mRNA /cds=p(183,1460) /gb=NM_214137 /gi=47523073 /ug=Ssc.15913 /len=2387"	-	-	-	-
gnl|UG|Ssc#S58306222	4	1.15	6	1.72	0	0	"PREDICTED: Sus scrofa transmembrane protein 106B-like (LOC100512621), mRNA /cds=p(139,966) /gb=XM_003130176 /gi=311264557 /ug=Ssc.5660 /len=2079"	GO:0031224//intrinsic to membrane	-	-	gi|311264558|ref|XP_003130224.1|/1.26255e-142/PREDICTED: transmembrane protein 106B-like [Sus scrofa]
gnl|UG|Ssc#S46879304	10	2.88	12	3.43	8	2.4	"PREDICTED: Sus scrofa bromodomain adjacent to zinc finger domain, 2A (BAZ2A), partial mRNA /cds=p(1,5741) /gb=XM_001927752 /gi=311255708 /ug=Ssc.13043 /len=5996"	GO:0031981//nuclear lumen;GO:0016585//chromatin remodeling complex;GO:0000792//heterochromatin	GO:0042393//histone binding;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0005102//receptor binding	GO:0016568//chromatin modification;GO:0006476//protein deacetylation;GO:0006305;GO:0006342//chromatin silencing	"gi|311255709|ref|XP_001927787.2|/0/PREDICTED: LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 2A, partial [Sus scrofa]"
gnl|UG|Ssc#S55310984	5	1.44	2	0.57	4	1.2	"FS693252 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRT10084E03 5', mRNA sequence /clone=OVRT10084E03 /clone_end=5' /gb=FS693252 /gi=288239863 /ug=Ssc.42554 /len=853"	GO:0031981//nuclear lumen	GO:0003712//transcription cofactor activity;GO:0004672//protein kinase activity;GO:0032559	"GO:0006355//regulation of transcription, DNA-dependent;GO:0000768//syncytium formation by plasma membrane fusion;GO:0006464//protein modification process"	gi|73947644|ref|XP_853246.1|/8.50045e-100/PREDICTED: similar to dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B isoform a isoform 2 [Canis familiaris]
gnl|UG|Ssc#S58303958	7	2.02	3	0.86	2	0.6	"PREDICTED: Sus scrofa stromal antigen 1 (STAG1), mRNA /cds=p(1,2226) /gb=XM_003132439 /gi=311269434 /ug=Ssc.79088 /len=2226"	-	-	-	-
gnl|UG|Ssc#S20938380	268	77.16	82	23.44	226	67.92	"AJ650103 CSEQRAN19 Sus scrofa cDNA clone C0003274_G16, mRNA sequence /clone=C0003274_G16 /gb=AJ650103 /gi=49326948 /ug=Ssc.85646 /len=389"	GO:0031224//intrinsic to membrane;GO:0005774//vacuolar membrane;GO:0005792//microsome;GO:0005789//endoplasmic reticulum membrane	GO:0004576//oligosaccharyl transferase activity;GO:0043021//ribonucleoprotein binding	GO:0042221//response to chemical stimulus;GO:0032502//developmental process;GO:0006487//protein N-linked glycosylation	"gi|149043117|gb|EDL96691.1|/2.25639e-51/ribophorin II, isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S58311138	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) (GALNT14), mRNA /cds=p(21,1679) /gb=XM_003125260 /gi=311252874 /ug=Ssc.60903 /len=1702"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0030246//carbohydrate binding;GO:0008376//acetylgalactosaminyltransferase activity	-	gi|311252875|ref|XP_003125308.1|/0/PREDICTED: polypeptide N-acetylgalactosaminyltransferase 14-like [Sus scrofa]
gnl|UG|Ssc#S55323501	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:AMP010096H03, expressed in alveolar macrophages /gb=AK343980 /gi=288781371 /ug=Ssc.54457 /len=2403"	GO:0005856//cytoskeleton;GO:0031981//nuclear lumen;GO:0000346//transcription export complex	GO:0003676//nucleic acid binding	GO:0006396//RNA processing;GO:0035162//embryonic hemopoiesis;GO:0002762//negative regulation of myeloid leukocyte differentiation;GO:0006406//mRNA export from nucleus	gi|149720299|ref|XP_001499084.1|/0/PREDICTED: similar to THO complex subunit 5 homolog (NF2/meningioma region protein pK1.3) (Placental protein 39.2) [Equus caballus]
gnl|UG|Ssc#S35171309	13	3.74	14	4	8	2.4	"Sus scrofa mRNA, clone:OVRM10053F02, expressed in ovary /gb=AK235147 /gi=115548530 /ug=Ssc.51894 /len=1960"	GO:0000776//kinetochore;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0000075//cell cycle checkpoint;GO:0007067//mitosis	gi|301756951|ref|XP_002914309.1|/0/PREDICTED: protein zwilch homolog [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55326791	28	8.06	15	4.29	55	16.53	"Sus scrofa mRNA, clone:OVRM10005E02, expressed in ovary /gb=AK347860 /gi=288778035 /ug=Ssc.39059 /len=2003"	-	GO:0003824//catalytic activity	-	gi|118151308|ref|NP_001071591.1|/0/abhydrolase domain-containing protein 8 [Bos taurus]
gnl|UG|Ssc#S58312175	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa synembryn-A-like, transcript variant 2 (LOC100517519), mRNA /cds=p(88,1698) /gb=XM_003124226 /gi=311250747 /ug=Ssc.7487 /len=2340"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0008047//enzyme activator activity;GO:0030695//GTPase regulator activity;GO:0005515//protein binding	GO:0043087//regulation of GTPase activity;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0043009//chordate embryonic development;GO:0007632//visual behavior	gi|311250748|ref|XP_003124274.1|/0/PREDICTED: synembryn-A-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58307148	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa pituitary homeobox 2-like (LOC100515395), mRNA /cds=p(1,1380) /gb=XM_003129249 /gi=311262670 /ug=Ssc.6994 /len=2077"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0001525//angiogenesis;GO:0007166//cell surface receptor linked signaling pathway;GO:0035051//cardiac cell differentiation;GO:0021536//diencephalon development;GO:0048845//venous blood vessel morphogenesis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0043010//camera-type eye development;GO:0008283//cell proliferation;GO:0009855//determination of bilateral symmetry;GO:0030326//embryonic limb morphogenesis;GO:0043009//chordate embryonic development;GO:0055008//cardiac muscle tissue morphogenesis;GO:0007519//skeletal muscle tissue development;GO:0060425//lung morphogenesis;GO:0016477//cell migration	gi|311262671|ref|XP_003129297.1|/0/PREDICTED: pituitary homeobox 2-like [Sus scrofa]
gnl|UG|Ssc#S55324967	12	3.45	3	0.86	6	1.8	"Sus scrofa mRNA, clone:SKNB10012E12, expressed in skin /gb=AK349640 /gi=288779905 /ug=Ssc.7578 /len=2295"	GO:0031981//nuclear lumen;GO:0000785//chromatin;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0032453//histone demethylase activity (H3-K4 specific);GO:0043426;GO:0001071//nucleic acid binding transcription factor activity;GO:0003713//transcription coactivator activity;GO:0050662//coenzyme binding;GO:0043565//sequence-specific DNA binding;GO:0035258//steroid hormone receptor binding	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0021536//diencephalon development;GO:0007599//hemostasis;GO:0070076//histone lysine demethylation;GO:0031328//positive regulation of cellular biosynthetic process;GO:0048468//cell development;GO:0043392//negative regulation of DNA binding;GO:0043009//chordate embryonic development;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0043388//positive regulation of DNA binding	gi|297666079|ref|XP_002811363.1|/0/PREDICTED: lysine-specific histone demethylase 1A isoform 3 [Pongo abelii]
gnl|UG|Ssc#S55284582	4	1.15	5	1.43	18	5.41	"FS664724 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10007A09 5', mRNA sequence /clone=HTMT10007A09 /clone_end=5' /gb=FS664724 /gi=288282996 /ug=Ssc.23192 /len=859"	GO:0016020//membrane;GO:0031410//cytoplasmic vesicle;GO:0042995//cell projection	"GO:0005488//binding;GO:0016614//oxidoreductase activity, acting on CH-OH group of donors"	GO:0019321//pentose metabolic process;GO:0046496	gi|114671066|ref|XP_511756.2|/2.86604e-95/PREDICTED: dicarbonyl/L-xylulose reductase isoform 5 [Pan troglodytes]
gnl|UG|Ssc#S55265912	2	0.58	0	0	0	0	"FS663037 full-length enriched swine cDNA library, adult colon Sus scrofa cDNA clone CLNT10075G12 5', mRNA sequence /clone=CLNT10075G12 /clone_end=5' /gb=FS663037 /gi=288269044 /ug=Ssc.78008 /len=611"	-	-	-	-
gnl|UG|Ssc#S55517365	0	0	3	0.86	0	0	"Sus scrofa sperm acrosome associated 5 (SPACA5), mRNA /cds=p(1,483) /gb=NM_001177930 /gi=295444981 /ug=Ssc.78558 /len=483"	-	"GO:0004553//hydrolase activity, hydrolyzing O-glycosyl compounds"	GO:0009056//catabolic process	gi|295444982|ref|NP_001171401.1|/4.61625e-96/sperm acrosome-associated protein 5 [Sus scrofa]
gnl|UG|Ssc#S21577622	0	0	0	0	2	0.6	"UMC-pd3ov3-004-c04 Oviduct gilt D3 of estrous cycle pd3ov Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO990516 /gi=51349790 /ug=Ssc.39961 /len=337"	-	-	-	-
gnl|UG|Ssc#S23872074	43	12.38	52	14.86	29	8.72	"Sus scrofa cationic amino acid transporter-1 mRNA, complete cds /cds=p(367,2256) /gb=AY371320 /gi=38488983 /ug=Ssc.87367 /len=6416"	GO:0016021//integral to membrane	GO:0004871//signal transducer activity;GO:0015174//basic amino acid transmembrane transporter activity	GO:0015802//basic amino acid transport;GO:0006807//nitrogen compound metabolic process;GO:0009966//regulation of signal transduction	gi|60302866|ref|NP_001012631.1|/0/high affinity cationic amino acid transporter 1 [Sus scrofa]
gnl|UG|Ssc#S35164467	0	0	4	1.14	3	0.9	"Sus scrofa mRNA, clone:MLN010057C06, expressed in mesenteric lymph node /gb=AK233874 /gi=115555259 /ug=Ssc.94265 /len=1822"	GO:0031981//nuclear lumen;GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	"gi|119580717|gb|EAW60313.1|/9.69133e-152/ribosomal protein L3, isoform CRA_d [Homo sapiens]"
gnl|UG|Ssc#S35164161	4	1.15	2	0.57	7	2.1	"Sus scrofa mRNA, clone:SPL010011C06, expressed in spleen /gb=AK237197 /gi=115555565 /ug=Ssc.23960 /len=1136"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0004175//endopeptidase activity	GO:0012502//induction of programmed cell death;GO:0043010//camera-type eye development;GO:0043065//positive regulation of apoptosis;GO:0010038//response to metal ion;GO:0010212//response to ionizing radiation;GO:0000302//response to reactive oxygen species;GO:0002526//acute inflammatory response;GO:0009746;GO:0043627//response to estrogen stimulus;GO:0019538//protein metabolic process	gi|78369394|ref|NP_001030496.1|/1.66799e-126/caspase-6 precursor [Bos taurus]
gnl|UG|Ssc#S26726202	2	0.58	0	0	0	0	"AJ962286 KN404_2 Sus scrofa cDNA clone C0007755g16 3', mRNA sequence /clone=C0007755g16 /clone_end=3' /gb=AJ962286 /gi=74379102 /ug=Ssc.46489 /len=873"	-	-	-	gi|258676922|gb|ACV87314.1|/2.30815e-07/IL-23 [Sus scrofa]
gnl|UG|Ssc#S20938454	2	0.58	0	0	0	0	"AJ650177 CSEQRAN19 Sus scrofa cDNA clone C0003274_K01, mRNA sequence /clone=C0003274_K01 /gb=AJ650177 /gi=49327022 /ug=Ssc.85650 /len=497"	-	-	-	gi|28385954|gb|AAH46527.1|/5.86575e-44/2700049A03Rik protein [Mus musculus]
gnl|UG|Ssc#S23691997	2	0.58	8	2.29	2	0.6	"1098183 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN103096 /gi=59775872 /ug=Ssc.18658 /len=811"	-	-	-	-
gnl|UG|Ssc#S58304826	97	27.93	310	88.61	68	20.44	"PREDICTED: Sus scrofa canalicular multispecific organic anion transporter 2-like (LOC100513231), mRNA /cds=p(1,4590) /gb=XM_003131575 /gi=311267539 /ug=Ssc.80792 /len=6035"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0044459//plasma membrane part	"GO:0042626//ATPase activity, coupled to transmembrane movement of substances;GO:0008509//anion transmembrane transporter activity;GO:0032559"	GO:0015721//bile acid and bile salt transport;GO:0015893//drug transport;GO:0006820//anion transport;GO:0009207;GO:0008202//steroid metabolic process	gi|311267540|ref|XP_003131623.1|/0/PREDICTED: canalicular multispecific organic anion transporter 2-like [Sus scrofa]
gnl|UG|Ssc#S58311505	29	8.35	31	8.86	23	6.91	"PREDICTED: Sus scrofa REV1 homolog (S. cerevisiae) (REV1), mRNA /cds=p(1,3786) /gb=XM_003124902 /gi=311252127 /ug=Ssc.54798 /len=4543"	GO:0031981//nuclear lumen	GO:0046872//metal ion binding;GO:0003677//DNA binding;GO:0034061	GO:0019985//translesion synthesis;GO:0009416//response to light stimulus	gi|311252128|ref|XP_003124950.1|/0/PREDICTED: DNA repair protein REV1-like [Sus scrofa]
gnl|UG|Ssc#S31122304	0	0	0	0	2	0.6	"1545175 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY426142 /gi=87227445 /ug=Ssc.25251 /len=703"	-	-	-	-
gnl|UG|Ssc#S58313182	131	37.72	102	29.16	152	45.68	"PREDICTED: Sus scrofa protein KRI1 homolog (LOC100525385), mRNA /cds=p(146,2272) /gb=XM_003123214 /gi=311248689 /ug=Ssc.54775 /len=2944"	-	-	-	gi|311248690|ref|XP_003123262.1|/0/PREDICTED: protein KRI1 homolog [Sus scrofa]
gnl|UG|Ssc#S58303632	29	8.35	41	11.72	16	4.81	"PREDICTED: Sus scrofa chromatin assembly factor 1, subunit B (p60) (CHAF1B), mRNA /cds=p(131,1804) /gb=XM_003132765 /gi=311270210 /ug=Ssc.27353 /len=2421"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0005515//protein binding	"GO:0006259//DNA metabolic process;GO:0033554//cellular response to stress;GO:0006334//nucleosome assembly;GO:0006351//transcription, DNA-dependent"	gi|311270211|ref|XP_003132813.1|/0/PREDICTED: chromatin assembly factor 1 subunit B-like [Sus scrofa]
gnl|UG|Ssc#S35171038	185	53.26	120	34.3	82	24.64	"Sus scrofa mRNA, clone:LNG010020B06, expressed in lung /gb=AK231759 /gi=115548801 /ug=Ssc.12113 /len=1531"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006352//transcription initiation, DNA-dependent;GO:0006353//transcription termination, DNA-dependent"	gi|239809529|gb|ACS26236.1|/4.82145e-53/SAF-3 [Homo sapiens]
gnl|UG|Ssc#S19543264	32	9.21	14	4	23	6.91	"948507 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN159432 /gi=46173862 /ug=Ssc.94278 /len=891"	-	-	-	-
gnl|UG|Ssc#S58303413	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa cytospin-A-like (LOC100519740), mRNA /cds=p(304,3153) /gb=XM_003132983 /gi=311270994 /ug=Ssc.27039 /len=4928"	-	-	GO:0009987//cellular process	gi|311270995|ref|XP_003133031.1|/0/PREDICTED: cytospin-A-like [Sus scrofa]
gnl|UG|Ssc#S52535113	0	0	2	0.57	0	0	"Sus scrofa suppressor of cytokine signaling 5 (SOCS5), mRNA /cds=p(183,1793) /gb=NM_001162890 /gi=242253865 /ug=Ssc.75253 /len=2120"	GO:0044424//intracellular part	GO:0070851//growth factor receptor binding;GO:0004857//enzyme inhibitor activity	GO:0007243//intracellular protein kinase cascade;GO:0040007//growth;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0045623//negative regulation of T-helper cell differentiation;GO:0045624	gi|242253866|ref|NP_001156362.1|/0/suppressor of cytokine signaling 5 [Sus scrofa]
gnl|UG|Ssc#S46879899	3	0.86	3	0.86	0	0	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase RNF115-like (LOC100156608), mRNA /cds=p(110,991) /gb=XM_001925832 /gi=311254436 /ug=Ssc.21439 /len=2522"	GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination	gi|311254437|ref|XP_001925867.2|/7.30077e-156/PREDICTED: e3 ubiquitin-protein ligase RNF115-like [Sus scrofa]
gnl|UG|Ssc#S58307640	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100523127 (LOC100523127), mRNA /cds=p(1,1494) /gb=XM_003128753 /gi=311261654 /ug=Ssc.94296 /len=1783"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311261655|ref|XP_003128801.1|/0/PREDICTED: hypothetical protein LOC100523127 [Sus scrofa]
gnl|UG|Ssc#S58304447	0	0	0	0	0	0	"PREDICTED: Sus scrofa cytochrome b5 domain-containing protein 1-like (LOC100522758), mRNA /cds=p(367,1053) /gb=XM_003131948 /gi=311268322 /ug=Ssc.56085 /len=1325"	-	GO:0005506//iron ion binding	-	gi|311268323|ref|XP_003131996.1|/3.20715e-127/PREDICTED: cytochrome b5 domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58312758	106	30.52	21	6	33	9.92	"PREDICTED: Sus scrofa sequestosome-1-like (LOC100518718), mRNA /cds=p(112,1434) /gb=XM_003123639 /gi=311249552 /ug=Ssc.3612 /len=2185"	GO:0031981//nuclear lumen;GO:0005768//endosome	GO:0046914//transition metal ion binding;GO:0005102//receptor binding;GO:0019901//protein kinase binding;GO:0031593//polyubiquitin binding;GO:0000989//transcription factor binding transcription factor activity;GO:0019904//protein domain specific binding;GO:0042802//identical protein binding	GO:0033036;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0016192//vesicle-mediated transport;GO:0051259//protein oligomerization;GO:0001932//regulation of protein phosphorylation;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0006917//induction of apoptosis;GO:0048869;GO:0006914//autophagy;GO:0019941//modification-dependent protein catabolic process;GO:0043066//negative regulation of apoptosis	gi|311249553|ref|XP_003123687.1|/0/PREDICTED: sequestosome-1-like [Sus scrofa]
gnl|UG|Ssc#S58309703	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa apoptotic peptidase activating factor 1, transcript variant 1 (APAF1), mRNA /cds=p(1,3750) /gb=XM_003126698 /gi=311256643 /ug=Ssc.85923 /len=3982"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0016505//apoptotic protease activator activity;GO:0032559	GO:0048731;GO:0006917//induction of apoptosis;GO:0006919//activation of caspase activity;GO:0006950//response to stress	gi|311256644|ref|XP_003126746.1|/0/PREDICTED: apoptotic protease-activating factor 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S49954156	5	1.44	13	3.72	8	2.4	"Sus scrofa sirtuin 6 isoform 2 (SIRT6) mRNA, complete cds, alternatively spliced /cds=p(29,1108) /gb=FJ457624 /gi=217331636 /ug=Ssc.44465 /len=1698"	"GO:0000784//nuclear chromosome, telomeric region"	"GO:0051287//NAD binding;GO:0016763//transferase activity, transferring pentosyl groups;GO:0046914//transition metal ion binding;GO:0017136//NAD-dependent histone deacetylase activity"	"GO:0016458//gene silencing;GO:0035601//protein deacylation;GO:0006351//transcription, DNA-dependent"	gi|217331637|gb|ACK38355.1|/0/sirtuin 6 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58308777	21	6.05	17	4.86	8	2.4	"PREDICTED: Sus scrofa EF-hand domain-containing protein D2-like (LOC100520743), mRNA /cds=p(48,767) /gb=XM_003127628 /gi=311258549 /ug=Ssc.21173 /len=2389"	GO:0016020//membrane	GO:0046872//metal ion binding	-	gi|311258550|ref|XP_003127676.1|/5.34202e-84/PREDICTED: EF-hand domain-containing protein D2-like [Sus scrofa]
gnl|UG|Ssc#S58309448	9	2.59	3	0.86	0	0	"PREDICTED: Sus scrofa solute carrier family 38, member 7 (SLC38A7), mRNA /cds=p(1,1521) /gb=XM_003126951 /gi=311257187 /ug=Ssc.83495 /len=1521"	-	-	-	-
gnl|UG|Ssc#S58313201	6	1.73	2	0.57	4	1.2	"PREDICTED: Sus scrofa glucosidase 2 subunit beta-like (LOC100516540), mRNA /cds=p(125,1738) /gb=XM_003123179 /gi=311248651 /ug=Ssc.19774 /len=2564"	GO:0044432//endoplasmic reticulum part;GO:0043234//protein complex;GO:0016020//membrane	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0005543//phospholipid binding;GO:0019901//protein kinase binding"	GO:0035556//intracellular signal transduction;GO:0051259//protein oligomerization;GO:0042742//defense response to bacterium;GO:0006796//phosphate metabolic process;GO:0006487//protein N-linked glycosylation	gi|311248652|ref|XP_003123227.1|/0/PREDICTED: glucosidase 2 subunit beta-like [Sus scrofa]
gnl|UG|Ssc#S23213060	47	13.53	2	0.57	43	12.92	"Sus scrofa clone Clu_4683.scr.msk.p1.Contig1, mRNA sequence /gb=AY609948 /gi=52351518 /ug=Ssc.93833 /len=2684"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0022402//cell cycle process	gi|311264742|ref|XP_003130311.1|/0/PREDICTED: HMG box-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S17510181	3	0.86	0	0	0	0	"BX665207 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0003.e.11 5prim, mRNA sequence /clone=scag0003.e.11 /clone_end=5' /gb=BX665207 /gi=90227987 /ug=Ssc.3180 /len=917"	-	-	-	-
gnl|UG|Ssc#S35168385	4	1.15	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10132D01, expressed in ovary /gb=AK235983 /gi=115551305 /ug=Ssc.2370 /len=2522"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0043169//cation binding;GO:0032559;GO:0004702//receptor signaling protein serine/threonine kinase activity	GO:0035556//intracellular signal transduction;GO:0006915//apoptosis;GO:0001934//positive regulation of protein phosphorylation	gi|55742847|ref|NP_999494.1|/0/serine/threonine-protein kinase A-Raf [Sus scrofa]
gnl|UG|Ssc#S58303017	97	27.93	253	72.32	164	49.29	"PREDICTED: Sus scrofa hypothetical protein LOC100511785 (LOC100511785), mRNA /cds=p(1,1275) /gb=XM_003133379 /gi=311272398 /ug=Ssc.75004 /len=1383"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0003697//single-stranded DNA binding	GO:0000377;GO:0050657	gi|311272399|ref|XP_003133427.1|/3.05326e-144/PREDICTED: hypothetical protein LOC100511785 [Sus scrofa]
gnl|UG|Ssc#S46879318	46	13.24	7	2	24	7.21	"PREDICTED: Sus scrofa SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, transcript variant 2 (SMARCC2), mRNA /cds=p(1,2424) /gb=XM_001929168 /gi=311255682 /ug=Ssc.90957 /len=2424"	GO:0031981//nuclear lumen;GO:0070603//SWI/SNF-type complex	GO:0005488//binding;GO:0003712//transcription cofactor activity	"GO:0016568//chromatin modification;GO:0006355//regulation of transcription, DNA-dependent"	gi|311255683|ref|XP_001929203.2|/0/PREDICTED: SWI/SNF complex subunit SMARCC2 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S46878786	36	10.36	120	34.3	33	9.92	"PREDICTED: Sus scrofa mannosidase, alpha, class 2C, member 1, transcript variant 1 (MAN2C1), mRNA /cds=p(16,3138) /gb=XM_001924189 /gi=311260767 /ug=Ssc.3397 /len=3232"	-	-	-	-
gnl|UG|Ssc#S55322979	8	2.3	0	0	4	1.2	"Sus scrofa mRNA, clone:DCI010003E10, expressed in dendritic cells (immature) /gb=AK344303 /gi=288781893 /ug=Ssc.7129 /len=2933"	GO:0016234//inclusion body;GO:0031981//nuclear lumen	GO:0016462//pyrophosphatase activity;GO:0032559	-	gi|194386052|dbj|BAG59590.1|/0/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S58304524	148	42.61	159	45.45	192	57.7	"PREDICTED: Sus scrofa ubiquitin-conjugating enzyme E2 G1-like (LOC100522828), mRNA /cds=p(1,882) /gb=XM_003131884 /gi=311268164 /ug=Ssc.31187 /len=2031"	-	GO:0019899//enzyme binding;GO:0019787//small conjugating protein ligase activity;GO:0032559	GO:0019941//modification-dependent protein catabolic process;GO:0000209//protein polyubiquitination	gi|311268165|ref|XP_003131932.1|/2.57481e-116/PREDICTED: ubiquitin-conjugating enzyme E2 G1-like [Sus scrofa]
gnl|UG|Ssc#S19546257	117	33.68	160	45.74	150	45.08	"951733 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN162353 /gi=46176783 /ug=Ssc.15235 /len=792"	-	-	-	-
gnl|UG|Ssc#S6081331	4	1.15	3	0.86	4	1.2	"MI-P-CP1-nza-l-12-0-UI.s1 MI-P-CP1 Sus scrofa cDNA clone MI-P-CP1-nza-l-12-0-UI 3', mRNA sequence /clone=MI-P-CP1-nza-l-12-0-UI /clone_end=3' /gb=BQ604015 /gi=21550741 /ug=Ssc.13061 /len=473"	-	-	-	-
gnl|UG|Ssc#S35165878	93	26.78	16	4.57	69	20.74	"Sus scrofa mRNA, clone:PBL010025D01, expressed in periphral blood mononuclear cell /gb=AK236853 /gi=115553848 /ug=Ssc.22016 /len=1460"	GO:0005667//transcription factor complex	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding	GO:0016049//cell growth;GO:0006915//apoptosis;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0010033//response to organic substance	gi|301784625|ref|XP_002927727.1|/1.56884e-100/PREDICTED: transcription initiation factor TFIID subunit 9B-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S18361729	13	3.74	13	3.72	16	4.81	"Sus scrofa phosphoglycerate kinase 2 (PGK2) mRNA, complete cds /cds=p(124,1377) /gb=AY496962 /gi=40647092 /ug=Ssc.58731 /len=1665"	GO:0044444//cytoplasmic part	GO:0016301//kinase activity;GO:0032559	GO:0006796//phosphate metabolic process;GO:0006007//glucose catabolic process	gi|47523276|ref|NP_998947.1|/0/phosphoglycerate kinase 2 [Sus scrofa]
gnl|UG|Ssc#S52898488	5	1.44	10	2.86	0	0	"Sus scrofa insulin-like growth factor binding protein 7 (IGFBP-7) mRNA, complete cds /cds=p(41,889) /gb=GQ266680 /gi=253982041 /ug=Ssc.17186 /len=1147"	-	-	-	-
gnl|UG|Ssc#S40329038	6	1.73	2	0.57	6	1.8	"rnca06b_e5.y1 nca Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW423645 /gi=182785739 /ug=Ssc.66774 /len=610"	-	-	-	-
gnl|UG|Ssc#S58305711	19	5.47	7	2	18	5.41	"PREDICTED: Sus scrofa DnaJ (Hsp40) homolog, subfamily A, member 1 (DNAJA1), mRNA /cds=p(153,1346) /gb=XM_003130682 /gi=311265604 /ug=Ssc.8473 /len=3933"	GO:0000267//cell fraction;GO:0044424//intracellular part	GO:0043169//cation binding;GO:0070325//lipoprotein particle receptor binding;GO:0032559	GO:0044267//cellular protein metabolic process;GO:0048870//cell motility;GO:0030518//steroid hormone receptor signaling pathway;GO:0048232//male gamete generation;GO:0006974//response to DNA damage stimulus	gi|114624360|ref|XP_001154348.1|/0/PREDICTED: similar to DnaJ-like protein [Pan troglodytes]
gnl|UG|Ssc#S46876775	22	6.33	5	1.43	41	12.32	"PREDICTED: Sus scrofa Calcineurin A protein, transcript variant 1 (LOC396603), mRNA /cds=p(136,1713) /gb=XM_001928015 /gi=311271386 /ug=Ssc.19700 /len=3314"	GO:0032991//macromolecular complex;GO:0000267//cell fraction	GO:0043169//cation binding;GO:0004722//protein serine/threonine phosphatase activity;GO:0046983//protein dimerization activity	GO:0030098//lymphocyte differentiation;GO:0002260//lymphocyte homeostasis;GO:0006796//phosphate metabolic process;GO:0019725//cellular homeostasis;GO:0010467//gene expression;GO:0014075//response to amine stimulus;GO:0001911;GO:0006464//protein modification process	gi|149773590|ref|NP_001092684.1|/0/serine/threonine-protein phosphatase 2B catalytic subunit beta isoform [Bos taurus]
gnl|UG|Ssc#S31127878	2	0.58	4	1.14	3	0.9	"1556476 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY431716 /gi=87233019 /ug=Ssc.47984 /len=646"	-	-	-	-
gnl|UG|Ssc#S58314782	105	30.23	182	52.02	101	30.35	"PREDICTED: Sus scrofa protein FAM98B-like (LOC100522915), mRNA /cds=p(1,1287) /gb=XM_003121604 /gi=311245042 /ug=Ssc.43605 /len=1935"	GO:0043234//protein complex	GO:0005488//binding	-	gi|311245043|ref|XP_003121652.1|/9.09939e-156/PREDICTED: protein FAM98B-like [Sus scrofa]
gnl|UG|Ssc#S55321288	6	1.73	3	0.86	4	1.2	"Sus scrofa mRNA, clone:ITT010079C07, expressed in small intestine /gb=AK345199 /gi=288783584 /ug=Ssc.4977 /len=1480"	GO:0031981//nuclear lumen;GO:0005657//replication fork	GO:0016462//pyrophosphatase activity;GO:0032559;GO:0003677//DNA binding	GO:0006261//DNA-dependent DNA replication;GO:0051320;GO:0007050//cell cycle arrest;GO:0009207;GO:0006289//nucleotide-excision repair;GO:0000723//telomere maintenance	gi|109066327|ref|XP_001082511.1|/3.36516e-120/PREDICTED: replication factor C subunit 2 isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S40192521	32	9.21	28	8	42	12.62	"rjej29b_c7.y1 jej Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW287428 /gi=182493406 /ug=Ssc.91666 /len=611"	-	-	-	gi|300872546|gb|ADK39026.1|/7.49098e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S35169878	275	79.17	182	52.02	335	100.68	"Sus scrofa mRNA, clone:LNG010100H05, expressed in lung /gb=AK232196 /gi=115549961 /ug=Ssc.13017 /len=1532"	GO:0015935//small ribosomal subunit	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0008283//cell proliferation	"gi|4506725|ref|NP_000998.1|/6.56056e-151/40S ribosomal protein S4, X isoform X isoform [Homo sapiens]"
gnl|UG|Ssc#S18384304	13	3.74	0	0	7	2.1	"935455 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK464457 /gi=40835738 /ug=Ssc.7501 /len=894"	-	-	-	-
gnl|UG|Ssc#S55323275	0	0	0	0	4	1.2	"Sus scrofa mRNA, clone:SPL010069B04, expressed in spleen /gb=AK350467 /gi=288781597 /ug=Ssc.47741 /len=1104"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	-	gi|311251498|ref|XP_003124638.1|/4.53314e-89/PREDICTED: zinc finger CCCH domain-containing protein 7A-like [Sus scrofa]
gnl|UG|Ssc#S40352211	6	1.73	6	1.72	15	4.51	"rnje14c_p24.y1 nje Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW446818 /gi=182811247 /ug=Ssc.13473 /len=519"	-	-	-	-
gnl|UG|Ssc#S18384536	18	5.18	19	5.43	11	3.31	"935733 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK464705 /gi=40835986 /ug=Ssc.9187 /len=848"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0004857//enzyme inhibitor activity	GO:0006576//cellular biogenic amine metabolic process;GO:0006520//cellular amino acid metabolic process	gi|9802040|gb|AAF99601.1|AF242521_1/4.17279e-95/ornithine decarboxylase antizyme [Homo sapiens]
gnl|UG|Ssc#S58305207	4	1.15	13	3.72	4	1.2	"PREDICTED: Sus scrofa envoplakin (EVPL), mRNA /cds=p(1,6102) /gb=XM_003131184 /gi=311266757 /ug=Ssc.29808 /len=6323"	GO:0005856//cytoskeleton;GO:0030054//cell junction	GO:0005515//protein binding	GO:0030216//keratinocyte differentiation;GO:0006464//protein modification process	gi|311266758|ref|XP_003131232.1|/0/PREDICTED: envoplakin-like [Sus scrofa]
gnl|UG|Ssc#S58301704	38	10.94	29	8.29	34	10.22	"PREDICTED: Sus scrofa transportin 3 (TNPO3), mRNA /cds=p(338,3109) /gb=XM_003134682 /gi=311275438 /ug=Ssc.6497 /len=3641"	GO:0043231//intracellular membrane-bounded organelle	GO:0004871//signal transducer activity;GO:0005488//binding	GO:0006810//transport	gi|311275439|ref|XP_003134730.1|/0/PREDICTED: transportin-3-like [Sus scrofa]
gnl|UG|Ssc#S58312855	2	0.58	3	0.86	2	0.6	"PREDICTED: Sus scrofa armadillo repeat-containing protein 6-like (LOC100512037), mRNA /cds=p(1,2040) /gb=XM_003123546 /gi=311249356 /ug=Ssc.19613 /len=2584"	-	GO:0005488//binding	-	gi|311249357|ref|XP_003123594.1|/0/PREDICTED: LOW QUALITY PROTEIN: armadillo repeat-containing protein 6-like [Sus scrofa]
gnl|UG|Ssc#S27877962	2	0.58	2	0.57	6	1.8	"Sus scrofa chromosome 17 clone pkmCon100, mRNA sequence /gb=AY803123 /gi=61696660 /ug=Ssc.49445 /len=1538"	-	-	-	-
gnl|UG|Ssc#S18263104	3	0.86	0	0	0	0	"BP159595 full-length enriched swine cDNA library, adult thymus Sus scrofa cDNA clone THY010040A03 5', mRNA sequence /clone=THY010040A03 /clone_end=5' /gb=BP159595 /gi=40409068 /ug=Ssc.29765 /len=685"	GO:0016585//chromatin remodeling complex	GO:0019901//protein kinase binding;GO:0003712//transcription cofactor activity;GO:0017136//NAD-dependent histone deacetylase activity;GO:0008134//transcription factor binding;GO:0016564//transcription repressor activity	GO:0045596//negative regulation of cell differentiation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0001818//negative regulation of cytokine production;GO:0034329//cell junction assembly;GO:0016202//regulation of striated muscle tissue development;GO:0030098//lymphocyte differentiation;GO:0006952//defense response;GO:0002042//cell migration involved in sprouting angiogenesis;GO:0006325//chromatin organization	gi|73996684|ref|XP_863877.1|/3.29483e-100/PREDICTED: similar to histone deacetylase 7A isoform b isoform 2 [Canis familiaris]
gnl|UG|Ssc#S26730488	7	2.02	2	0.57	0	0	"AJ941396 CSEQRAN17 Sus scrofa cDNA clone C0007315f11 3', mRNA sequence /clone=C0007315f11 /clone_end=3' /gb=AJ941396 /gi=74358212 /ug=Ssc.87813 /len=721"	-	-	-	-
gnl|UG|Ssc#S58303851	44	12.67	170	48.59	38	11.42	"PREDICTED: Sus scrofa actin-like 6A (ACTL6A), mRNA /cds=p(172,1461) /gb=XM_003132545 /gi=311269674 /ug=Ssc.54019 /len=2096"	GO:0070603//SWI/SNF-type complex;GO:0043189//H4/H2A histone acetyltransferase complex;GO:0016020//membrane	GO:0032559	"GO:0048731;GO:0050789//regulation of biological process;GO:0023052//signaling;GO:0006351//transcription, DNA-dependent;GO:0016573//histone acetylation"	gi|311269675|ref|XP_003132593.1|/0/PREDICTED: actin-like protein 6A-like [Sus scrofa]
gnl|UG|Ssc#S18358866	16	4.61	7	2	9	2.7	"911599 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK454307 /gi=40801521 /ug=Ssc.57670 /len=747"	-	-	-	gi|74003570|ref|XP_861708.1|/2.90344e-18/PREDICTED: similar to Importin alpha-4 subunit (Karyopherin alpha-4 subunit) (Qip1 protein) isoform 3 [Canis familiaris]
gnl|UG|Ssc#S35170715	0	0	0	0	0	0	"Sus scrofa mRNA, clone:TCH010082B05, expressed in trachea /gb=AK238313 /gi=115549124 /ug=Ssc.2240 /len=1682"	GO:0005764//lysosome;GO:0031224//intrinsic to membrane;GO:0005770//late endosome	GO:0003824//catalytic activity	-	gi|114651939|ref|XP_520669.2|/4.9551e-147/PREDICTED: hypothetical protein [Pan troglodytes]
gnl|UG|Ssc#S58305418	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa zinc finger CCCH-type containing 13 (ZC3H13), mRNA /cds=p(329,5194) /gb=XM_003130977 /gi=311266272 /ug=Ssc.10054 /len=5194"	-	GO:0005488//binding	-	gi|311266273|ref|XP_003131025.1|/0/PREDICTED: zinc finger CCCH domain-containing protein 13-like [Sus scrofa]
gnl|UG|Ssc#S58303169	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100524831 (LOC100524831), mRNA /cds=p(1,969) /gb=XM_003133227 /gi=311272018 /ug=Ssc.87220 /len=1225"	GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0030695//GTPase regulator activity;GO:0019899//enzyme binding;GO:0032561;GO:0019904//protein domain specific binding	GO:0012501//programmed cell death;GO:0035556//intracellular signal transduction;GO:0006909//phagocytosis;GO:0048870//cell motility;GO:0006935//chemotaxis;GO:0007599//hemostasis;GO:0007166//cell surface receptor linked signaling pathway	gi|311272019|ref|XP_003133275.1|/8.50599e-172/PREDICTED: hypothetical protein LOC100524831 [Sus scrofa]
gnl|UG|Ssc#S58310680	6	1.73	0	0	4	1.2	"PREDICTED: Sus scrofa RAG1-activating protein 1-like (LOC100151868), mRNA /cds=p(56,721) /gb=XM_003125719 /gi=311254181 /ug=Ssc.54700 /len=1015"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0051119//sugar transmembrane transporter activity	GO:0008643//carbohydrate transport;GO:0010628//positive regulation of gene expression	gi|311254182|ref|XP_003125767.1|/8.04322e-106/PREDICTED: LOW QUALITY PROTEIN: RAG1-activating protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58309482	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100519898 (LOC100519898), partial mRNA /cds=p(1,1313) /gb=XM_003126920 /gi=311257119 /ug=Ssc.76909 /len=1313"	GO:0016021//integral to membrane;GO:0044459//plasma membrane part	GO:0005275//amine transmembrane transporter activity;GO:0015291//secondary active transmembrane transporter activity	GO:0019752//carboxylic acid metabolic process;GO:0002376//immune system process;GO:0006807//nitrogen compound metabolic process;GO:0007599//hemostasis;GO:0065003;GO:0006865//amino acid transport	"gi|311257120|ref|XP_003126968.1|/0/PREDICTED: hypothetical protein LOC100519898, partial [Sus scrofa]"
gnl|UG|Ssc#S6071745	15	4.32	38	10.86	28	8.41	"AR21H9 Porcine Lymph node cDNA library, Mini, Cot 30 Sus scrofa cDNA, mRNA sequence /gb=BI118949 /gi=15413059 /ug=Ssc.43118 /len=415"	GO:0031091//platelet alpha granule;GO:0005578//proteinaceous extracellular matrix	GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0001775//cell activation;GO:0070848//response to growth factor stimulus;GO:0006887//exocytosis;GO:0023052//signaling;GO:0007599//hemostasis;GO:0008283//cell proliferation	gi|72535202|ref|NP_001026964.1|/6.45844e-14/SPARC precursor [Sus scrofa]
gnl|UG|Ssc#S58305001	6	1.73	6	1.72	5	1.5	"PREDICTED: Sus scrofa v-type proton ATPase 116 kDa subunit a isoform 1-like, transcript variant 1 (LOC100519868), mRNA /cds=p(169,2685) /gb=XM_003131389 /gi=311267180 /ug=Ssc.2711 /len=4161"	GO:0031224//intrinsic to membrane;GO:0031981//nuclear lumen;GO:0012506//vesicle membrane;GO:0048770;GO:0016469//proton-transporting two-sector ATPase complex	GO:0015077//monovalent inorganic cation transmembrane transporter activity;GO:0019899//enzyme binding	"GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006875//cellular metal ion homeostasis;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0015031//protein transport"	gi|311267181|ref|XP_003131437.1|/0/PREDICTED: v-type proton ATPase 116 kDa subunit a isoform 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S19542584	43	12.38	148	42.31	53	15.93	"947490 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158680 /gi=46173110 /ug=Ssc.44380 /len=621"	-	-	-	-
gnl|UG|Ssc#S58303498	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa f-box/WD repeat-containing protein 8-like (LOC100156796), mRNA /cds=p(1,1794) /gb=XM_003132892 /gi=311270679 /ug=Ssc.88757 /len=1794"	GO:0031461//cullin-RING ubiquitin ligase complex	GO:0005488//binding	GO:0048568//embryonic organ development	gi|311270680|ref|XP_003132940.1|/0/PREDICTED: LOW QUALITY PROTEIN: f-box/WD repeat-containing protein 8-like [Sus scrofa]
gnl|UG|Ssc#S58312911	33	9.5	10	2.86	31	9.32	"PREDICTED: Sus scrofa nuclear receptor subfamily 2 group F member 6-like (LOC100516724), mRNA /cds=p(236,1480) /gb=XM_003123489 /gi=311249240 /ug=Ssc.1893 /len=1955"	GO:0031981//nuclear lumen	GO:0004879//ligand-dependent nuclear receptor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0046872//metal ion binding;GO:0003677//DNA binding	GO:0009755//hormone-mediated signaling pathway;GO:0050961//detection of temperature stimulus involved in sensory perception;GO:0048468//cell development;GO:0009648//photoperiodism;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|311249241|ref|XP_003123537.1|/3.3886e-150/PREDICTED: nuclear receptor subfamily 2 group F member 6-like [Sus scrofa]
gnl|UG|Ssc#S58310833	5	1.44	8	2.29	3	0.9	"PREDICTED: Sus scrofa hypothetical protein LOC100515202 (LOC100515202), mRNA /cds=p(1,1668) /gb=XM_003125572 /gi=311253623 /ug=Ssc.27472 /len=1824"	-	GO:0043169//cation binding	-	gi|311253624|ref|XP_003125620.1|/0/PREDICTED: hypothetical protein LOC100515202 [Sus scrofa]
gnl|UG|Ssc#S35174130	51	14.68	51	14.58	27	8.11	"Sus scrofa mRNA, clone:AMP010048F03, expressed in alveolar macrophage /gb=AK230820 /gi=115545705 /ug=Ssc.43882 /len=2623"	GO:0030681;GO:0031981//nuclear lumen	GO:0005488//binding;GO:0004549//tRNA-specific ribonuclease activity	GO:0006399//tRNA metabolic process	gi|194042473|ref|XP_001924806.1|/4.96618e-147/PREDICTED: ribonuclease P protein subunit p30 [Sus scrofa]
gnl|UG|Ssc#S58302754	4	1.15	0	0	24	7.21	"PREDICTED: Sus scrofa fibronectin 1, transcript variant 2 (FN1), mRNA /cds=p(256,7692) /gb=XM_003133642 /gi=311273020 /ug=Ssc.16743 /len=8384"	-	-	-	-
gnl|UG|Ssc#S55834716	50	14.4	4	1.14	35	10.52	"Sus scrofa microtubule-associated protein 1 light chain 3 beta (MAP1LC3B) mRNA, complete cds /cds=p(125,502) /gb=HM046515 /gi=296874497 /ug=Ssc.56630 /len=1626"	GO:0015630//microtubule cytoskeleton;GO:0043005//neuron projection;GO:0044297//cell body;GO:0005774//vacuolar membrane;GO:0031982//vesicle;GO:0000267//cell fraction	GO:0015631//tubulin binding	GO:0044248//cellular catabolic process;GO:0043393//regulation of protein binding;GO:0007033//vacuole organization	gi|47564106|ref|NP_001001169.1|/2.2646e-64/microtubule-associated proteins 1A/1B light chain 3B [Bos taurus]
gnl|UG|Ssc#S23701423	2	0.58	0	0	5	1.5	"1111720 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN112526 /gi=59791192 /ug=Ssc.17393 /len=808"	-	-	-	gi|189082899|sp|Q497C3.2|CP013_RAT/5.20942e-96/RecName: Full=UPF0585 protein C16orf13 homolog
gnl|UG|Ssc#S46876691	8	2.3	0	0	2	0.6	"PREDICTED: Sus scrofa WD repeat and SOCS box-containing protein 2-like (LOC100152765), mRNA /cds=p(95,1318) /gb=XM_001925977 /gi=311270665 /ug=Ssc.56193 /len=2999"	-	-	GO:0007165//signal transduction	gi|194042982|ref|XP_001926012.1|/0/PREDICTED: WD repeat and SOCS box-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S55318507	0	0	2	0.57	2	0.6	"Sus scrofa mRNA, clone:UTR010098A08, expressed in uterus /gb=AK352464 /gi=288786377 /ug=Ssc.12435 /len=3820"	-	-	-	gi|194678559|ref|XP_871847.2|/0/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S19549209	108	31.09	138	39.45	67	20.14	"995734 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN165321 /gi=46179751 /ug=Ssc.14342 /len=789"	-	-	-	-
gnl|UG|Ssc#S55319815	200	57.58	21	6	82	24.64	"Sus scrofa mRNA, clone:THY010114B07, expressed in thymus /gb=AK351950 /gi=288785069 /ug=Ssc.49600 /len=1412"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0003723//RNA binding;GO:0043566//structure-specific DNA binding	"GO:0050658//RNA transport;GO:0051704;GO:0006913//nucleocytoplasmic transport;GO:0000398//nuclear mRNA splicing, via spliceosome"	"gi|148671985|gb|EDL03932.1|/2.34816e-107/mCG15678, isoform CRA_c [Mus musculus]"
gnl|UG|Ssc#S58305505	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa ubiquitin carboxyl-terminal hydrolase 12-like (LOC100511469), mRNA /cds=p(1,1365) /gb=XM_003130903 /gi=311266028 /ug=Ssc.42069 /len=1365"	-	GO:0019783//small conjugating protein-specific protease activity;GO:0004175//endopeptidase activity;GO:0005488//binding;GO:0016790//thiolester hydrolase activity	GO:0070646;GO:0019941//modification-dependent protein catabolic process	gi|311266029|ref|XP_003130951.1|/0/PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 12-like [Sus scrofa]
gnl|UG|Ssc#S35171171	10	2.88	3	0.86	14	4.21	"Sus scrofa mRNA, clone:LNG010005C07, expressed in lung /gb=AK231653 /gi=115548668 /ug=Ssc.2032 /len=1120"	GO:0031981//nuclear lumen;GO:0005882//intermediate filament	"GO:0043021//ribonucleoprotein binding;GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation;GO:0007166//cell surface receptor linked signaling pathway;GO:0042255//ribosome assembly	gi|149733215|ref|XP_001501586.1|/8.64534e-136/PREDICTED: similar to ITGB4BP protein [Equus caballus]
gnl|UG|Ssc#S19547688	3	0.86	3	0.86	4	1.2	"993959 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN163855 /gi=46178285 /ug=Ssc.26084 /len=886"	-	-	-	-
gnl|UG|Ssc#S35717975	0	0	0	0	0	0	"Sus scrofa hypoxia-inducible factor 1alpha (HIF1A) mRNA, complete cds /cds=p(148,2622) /gb=EF070345 /gi=118136504 /ug=Ssc.42713 /len=2859"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0019861//flagellum	GO:0060089;GO:0003677//DNA binding;GO:0046983//protein dimerization activity;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0019899//enzyme binding;GO:0031072//heat shock protein binding	GO:0033483;GO:0002246//wound healing involved in inflammatory response;GO:0001935//endothelial cell proliferation;GO:0006915//apoptosis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0001701//in utero embryonic development;GO:0045765//regulation of angiogenesis;GO:0032787//monocarboxylic acid metabolic process;GO:0009967//positive regulation of signal transduction;GO:0032583//regulation of gene-specific transcription;GO:0032906;GO:0031328//positive regulation of cellular biosynthetic process;GO:0000904//cell morphogenesis involved in differentiation;GO:0001819//positive regulation of cytokine production;GO:0040008//regulation of growth;GO:0033500//carbohydrate homeostasis;GO:0014823//response to activity;GO:0003143//embryonic heart tube morphogenesis;GO:0010631//epithelial cell migration;GO:0020027//hemoglobin metabolic process;GO:0044259;GO:0006110//regulation of glycolysis;GO:0006875//cellular metal ion homeostasis;GO:0009100//glycoprotein metabolic process;GO:0034599//cellular response to oxidative stress;GO:0045639//positive regulation of myeloid cell differentiation;GO:0032770//positive regulation of monooxygenase activity	gi|178056663|ref|NP_001116596.1|/0/hypoxia-inducible factor 1-alpha [Sus scrofa]
gnl|UG|Ssc#S58303323	46	13.24	99	28.3	30	9.02	"PREDICTED: Sus scrofa dnaJ homolog subfamily C member 9-like (LOC100516297), mRNA /cds=p(124,906) /gb=XM_003133073 /gi=311271372 /ug=Ssc.20770 /len=2236"	-	GO:0005515//protein binding	GO:0044267//cellular protein metabolic process	gi|311271373|ref|XP_003133121.1|/1.7407e-129/PREDICTED: dnaJ homolog subfamily C member 9-like [Sus scrofa]
gnl|UG|Ssc#S55325181	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:PTG010069B07, expressed in pituitary gland /gb=AK349427 /gi=288779691 /ug=Ssc.9721 /len=2169"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0007165//signal transduction	gi|149714220|ref|XP_001490957.1|/1.50085e-162/PREDICTED: similar to ankyrin repeat and SOCS box-containing 8 [Equus caballus]
gnl|UG|Ssc#S55318829	38	10.94	9	2.57	17	5.11	"Sus scrofa mRNA, clone:UTR010057A06, expressed in uterus /gb=AK352341 /gi=288786055 /ug=Ssc.5335 /len=922"	GO:0031981//nuclear lumen;GO:0005759//mitochondrial matrix	GO:0043566//structure-specific DNA binding	GO:0051095;GO:0006259//DNA metabolic process;GO:0007005//mitochondrion organization	"gi|311275253|ref|XP_003134650.1|/8.80091e-77/PREDICTED: single-stranded DNA-binding protein, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S55322200	12	3.45	5	1.43	18	5.41	"Sus scrofa mRNA, clone:DCI010107F08, expressed in dendritic cells (immature) /gb=AK344683 /gi=288782672 /ug=Ssc.2719 /len=1686"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003677//DNA binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|296223998|ref|XP_002757861.1|/0/PREDICTED: metastasis-associated protein MTA3 [Callithrix jacchus]
gnl|UG|Ssc#S46877547	39	11.23	67	19.15	10	3.01	"PREDICTED: Sus scrofa interferon-related developmental regulator 2 (IFRD2), mRNA /cds=p(250,1575) /gb=XM_001925104 /gi=311268935 /ug=Ssc.15103 /len=2226"	-	-	-	gi|311268936|ref|XP_001925139.2|/0/PREDICTED: interferon-related developmental regulator 2 [Sus scrofa]
gnl|UG|Ssc#S20937593	54	15.55	7	2	39	11.72	"AJ649316 CSEQRAN19 Sus scrofa cDNA clone C0003272_C10, mRNA sequence /clone=C0003272_C10 /gb=AJ649316 /gi=49326161 /ug=Ssc.85541 /len=532"	GO:0030532//small nuclear ribonucleoprotein complex;GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0003723//RNA binding;GO:0005515//protein binding	"GO:0000398//nuclear mRNA splicing, via spliceosome;GO:0006353//transcription termination, DNA-dependent"	gi|4759160|ref|NP_004166.1|/6.60478e-58/small nuclear ribonucleoprotein Sm D3 [Homo sapiens]
gnl|UG|Ssc#S46876550	5	1.44	0	0	2	0.6	"PREDICTED: Sus scrofa POZ (BTB) and AT hook containing zinc finger 1, transcript variant 1 (PATZ1), mRNA /cds=p(1,2061) /gb=XM_001926992 /gi=311270968 /ug=Ssc.5429 /len=2322"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	"GO:0030098//lymphocyte differentiation;GO:0048232//male gamete generation;GO:0006351//transcription, DNA-dependent;GO:0008406//gonad development"	"gi|194043270|ref|XP_001927027.1|/0/PREDICTED: POZ-, AT hook-, and zinc finger-containing protein 1 isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S46879472	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa Smith-Magenis syndrome chromosomal region candidate gene 7 protein-like (LOC100157057), mRNA /cds=p(441,1748) /gb=XM_001929366 /gi=311255039 /ug=Ssc.46844 /len=2059"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311255040|ref|XP_001929401.2|/0/PREDICTED: Smith-Magenis syndrome chromosomal region candidate gene 7 protein-like [Sus scrofa]
gnl|UG|Ssc#S58302283	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa protein FAM71B-like (LOC100521874), mRNA /cds=p(55,1833) /gb=XM_003134108 /gi=311274040 /ug=Ssc.94179 /len=1833"	-	-	-	gi|311274041|ref|XP_003134156.1|/0/PREDICTED: protein FAM71B-like [Sus scrofa]
gnl|UG|Ssc#S58313425	11	3.17	30	8.58	8	2.4	"PREDICTED: Sus scrofa ubiquitin specific peptidase 47 (USP47), mRNA /cds=p(1,3930) /gb=XM_003122977 /gi=311248198 /ug=Ssc.10129 /len=5696"	GO:0031461//cullin-RING ubiquitin ligase complex	GO:0019783//small conjugating protein-specific protease activity;GO:0016790//thiolester hydrolase activity;GO:0019904//protein domain specific binding;GO:0016564//transcription repressor activity	GO:0032583//regulation of gene-specific transcription;GO:0042221//response to chemical stimulus;GO:0016579//protein deubiquitination;GO:0009411//response to UV;GO:0006915//apoptosis;GO:0019941//modification-dependent protein catabolic process;GO:0016049//cell growth;GO:0000086//G2/M transition of mitotic cell cycle;GO:0010466//negative regulation of peptidase activity;GO:0006281//DNA repair	gi|311248199|ref|XP_003123025.1|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 47-like [Sus scrofa]
gnl|UG|Ssc#S55262049	0	0	4	1.14	2	0.6	"FS682511 full-length enriched swine cDNA library, adult longissimus Sus scrofa cDNA clone MLTL10047D10 5', mRNA sequence /clone=MLTL10047D10 /clone_end=5' /gb=FS682511 /gi=288254407 /ug=Ssc.77890 /len=280"	-	-	-	-
gnl|UG|Ssc#S21557753	3	0.86	0	0	6	1.8	"UMC-pd20fet-015-d01 Day 20 fetus pd20fet Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO939485 /gi=51306244 /ug=Ssc.53003 /len=383"	-	-	-	-
gnl|UG|Ssc#S58306286	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa phosphoinositide-3-kinase, class 2, beta polypeptide (PIK3C2B), mRNA /cds=p(369,5270) /gb=XM_003130115 /gi=311264423 /ug=Ssc.23653 /len=5270"	GO:0043234//protein complex;GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0042598//vesicular fraction;GO:0016020//membrane	GO:0005543//phospholipid binding;GO:0016307//phosphatidylinositol phosphate kinase activity;GO:0035004//phosphatidylinositol 3-kinase activity;GO:0032559	GO:0046488//phosphatidylinositol metabolic process;GO:0007243//intracellular protein kinase cascade;GO:0048017//inositol lipid-mediated signaling	gi|311264424|ref|XP_003130163.1|/0/PREDICTED: phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit beta-like [Sus scrofa]
gnl|UG|Ssc#S20937237	5	1.44	0	0	0	0	"AJ648960 CSEQRAN19 Sus scrofa cDNA clone C0003271_C02, mRNA sequence /clone=C0003271_C02 /gb=AJ648960 /gi=49325805 /ug=Ssc.85584 /len=566"	GO:0043231//intracellular membrane-bounded organelle	GO:0004871//signal transducer activity	GO:0009056//catabolic process;GO:0010467//gene expression;GO:0023052//signaling	"gi|149032851|gb|EDL87706.1|/1.45256e-80/similar to nuclear receptor coactivator 7 (predicted), isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S35171910	7	2.02	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10028E05, expressed in ovary /gb=AK234902 /gi=115547925 /ug=Ssc.6487 /len=1640"	GO:0031981//nuclear lumen;GO:0042575	GO:0003676//nucleic acid binding;GO:0034061	GO:0006289//nucleotide-excision repair;GO:0000723//telomere maintenance;GO:0006261//DNA-dependent DNA replication;GO:0051320	gi|311275842|ref|XP_003134935.1|/0/PREDICTED: DNA polymerase delta subunit 2-like [Sus scrofa]
gnl|UG|Ssc#S18361159	0	0	0	0	2	0.6	"920948 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK456705 /gi=40803919 /ug=Ssc.75152 /len=786"	-	-	-	gi|311255062|ref|XP_003126065.1|/1.82286e-90/PREDICTED: Josephin-1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55322581	30	8.64	12	3.43	56	16.83	"Sus scrofa mRNA, clone:DCI010065F02, expressed in dendritic cells (immature) /gb=AK344502 /gi=288782291 /ug=Ssc.6731 /len=1557"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427;GO:0008287//protein serine/threonine phosphatase complex	GO:0005488//binding;GO:0019888//protein phosphatase regulator activity	"GO:0006511//ubiquitin-dependent protein catabolic process;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0019222//regulation of metabolic process;GO:0008283//cell proliferation;GO:0008630//DNA damage response, signal transduction resulting in induction of apoptosis"	gi|31083243|ref|NP_848702.1|/0/serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform c [Homo sapiens]
gnl|UG|Ssc#S58314243	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa DENN/MADD domain containing 1A (DENND1A), mRNA /cds=p(1,3051) /gb=XM_003122159 /gi=311246436 /ug=Ssc.25499 /len=3286"	GO:0043005//neuron projection;GO:0044297//cell body;GO:0044459//plasma membrane part;GO:0030136//clathrin-coated vesicle	GO:0030695//GTPase regulator activity;GO:0019904//protein domain specific binding	GO:0006897//endocytosis	gi|311246437|ref|XP_003122207.1|/0/PREDICTED: DENN domain-containing protein 1A-like [Sus scrofa]
gnl|UG|Ssc#S35174096	2	0.58	13	3.72	2	0.6	"Sus scrofa mRNA, clone:OVR010018G03, expressed in ovary /gb=AK234172 /gi=115545739 /ug=Ssc.2306 /len=1237"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005506//iron ion binding	GO:0006778//porphyrin metabolic process;GO:0048511//rhythmic process	gi|58332866|ref|NP_001011509.1|/7.41534e-107/heme-binding protein 1 [Sus scrofa]
gnl|UG|Ssc#S55326856	13	3.74	11	3.14	19	5.71	"Sus scrofa mRNA, clone:OVR010099G05, expressed in ovary /gb=AK347795 /gi=288777970 /ug=Ssc.10727 /len=1821"	GO:0043234//protein complex;GO:0005774//vacuolar membrane	GO:0005488//binding;GO:0016881//acid-amino acid ligase activity	GO:0012501//programmed cell death;GO:0007041//lysosomal transport;GO:0001932//regulation of protein phosphorylation;GO:0043393//regulation of protein binding;GO:0007033//vacuole organization;GO:0016197//endosome transport	gi|197101569|ref|NP_001124921.1|/1.45011e-164/AKT-interacting protein [Pongo abelii]
gnl|UG|Ssc#S35172626	2	0.58	9	2.57	0	0	"Sus scrofa mRNA, clone:OVR010090E12, expressed in ovary /gb=AK234582 /gi=115547209 /ug=Ssc.1758 /len=2981"	GO:0044424//intracellular part	GO:0005488//binding	GO:0009100//glycoprotein metabolic process;GO:0045069//regulation of viral genome replication;GO:0006950//response to stress;GO:0010467//gene expression	gi|260181509|gb|ACX35432.1|/0/A20 binding and inhibitor of NF-kB protein 2 [Sus scrofa]
gnl|UG|Ssc#S46880132	129	37.14	33	9.43	80	24.04	"PREDICTED: Sus scrofa coatomer protein complex, subunit alpha, transcript variant 1 (COPA), mRNA /cds=p(94,3795) /gb=XM_001928697 /gi=311254004 /ug=Ssc.13207 /len=4382"	GO:0030120//vesicle coat;GO:0042598//vesicular fraction;GO:0044421//extracellular region part	GO:0005102//receptor binding	GO:0007589//body fluid secretion;GO:0048200;GO:0015031//protein transport	gi|194035835|ref|XP_001928732.1|/0/PREDICTED: coatomer subunit alpha isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55321566	196	56.43	111	31.73	86	25.85	"Sus scrofa mRNA, clone:ITT010064B11, expressed in small intestine /gb=AK345121 /gi=288783306 /ug=Ssc.16767 /len=1913"	-	-	-	-
gnl|UG|Ssc#S29972905	0	0	2	0.57	0	0	"PDUts1068E12 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1068E12 5' similar to homologue to ref|NM_000293.1| Homo sapiens phosphorylase kinase, beta (PHKB), mRNA, mRNA sequence /clone=PDUts1068E12 /clone_end=5' /gb=CV869563 /gi=84123523 /ug=Ssc.88297 /len=551"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0015926//glucosidase activity;GO:0005515//protein binding	GO:0005977//glycogen metabolic process;GO:0019318//hexose metabolic process	"gi|297461745|ref|XP_589182.5|/1.6625e-102/PREDICTED: phosphorylase kinase, beta [Bos taurus]"
gnl|UG|Ssc#S58306525	0	0	0	0	0	0	"PREDICTED: Sus scrofa ubiquitin specific peptidase 28 (USP28), mRNA /cds=p(57,3263) /gb=XM_003129865 /gi=311263939 /ug=Ssc.33359 /len=4750"	GO:0031981//nuclear lumen	GO:0005488//binding;GO:0016790//thiolester hydrolase activity;GO:0019783//small conjugating protein-specific protease activity	"GO:0009314//response to radiation;GO:0006259//DNA metabolic process;GO:0019941//modification-dependent protein catabolic process;GO:0008630//DNA damage response, signal transduction resulting in induction of apoptosis;GO:0070646"	gi|311263940|ref|XP_003129913.1|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 28-like [Sus scrofa]
gnl|UG|Ssc#S58313421	16	4.61	3	0.86	8	2.4	"PREDICTED: Sus scrofa RNA polymerase-associated protein CTR9 homolog (LOC100520661), mRNA /cds=p(158,3673) /gb=XM_003122978 /gi=311248207 /ug=Ssc.22181 /len=4353"	GO:0016604//nuclear body;GO:0008023//transcription elongation factor complex	GO:0019904//protein domain specific binding	GO:0006513//protein monoubiquitination;GO:0016574//histone ubiquitination	gi|311248208|ref|XP_003123026.1|/0/PREDICTED: RNA polymerase-associated protein CTR9 homolog [Sus scrofa]
gnl|UG|Ssc#S58313513	372	107.1	966	276.13	503	151.16	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 3, subunit M (EIF3M), mRNA /cds=p(94,1218) /gb=XM_003122886 /gi=311248022 /ug=Ssc.3401 /len=4016"	-	-	-	gi|126332544|ref|XP_001380491.1|/0/PREDICTED: similar to PCI domain containing 1 (herpesvirus entry mediator) [Monodelphis domestica]
gnl|UG|Ssc#S55321974	0	0	2	0.57	2	0.6	"Sus scrofa mRNA, clone:TES010018A06, expressed in testis /gb=AK351170 /gi=288782898 /ug=Ssc.28788 /len=1512"	-	-	-	gi|74003372|ref|XP_849653.1|/2.71131e-141/PREDICTED: hypothetical protein XP_844560 isoform 2 [Canis familiaris]
gnl|UG|Ssc#S55320150	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:LVR010063B07, expressed in liver /gb=AK345940 /gi=288784722 /ug=Ssc.5250 /len=1878"	GO:0012505//endomembrane system;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005515//protein binding	GO:0048193//Golgi vesicle transport;GO:0015031//protein transport	gi|109073710|ref|XP_001094903.1|/5.11167e-172/PREDICTED: syntaxin-18 [Macaca mulatta]
gnl|UG|Ssc#S35164668	2	0.58	4	1.14	0	0	"Sus scrofa mRNA, clone:UTR010046F05, expressed in uterus /gb=AK240257 /gi=115555058 /ug=Ssc.20391 /len=1164"	GO:0034708	-	-	gi|13375654|ref|NP_078792.1|/2.28249e-102/PAXIP1-associated protein 1 [Homo sapiens]
gnl|UG|Ssc#S55306721	0	0	2	0.57	0	0	"FS710291 full-length enriched swine cDNA library, adult pituitary gland Sus scrofa cDNA clone PTG010069A10 5', mRNA sequence /clone=PTG010069A10 /clone_end=5' /gb=FS710291 /gi=288312978 /ug=Ssc.75903 /len=578"	-	-	-	gi|73974588|ref|XP_539156.2|/5.5049e-62/PREDICTED: similar to F33H2.2 [Canis familiaris]
gnl|UG|Ssc#S17514731	6	1.73	2	0.57	4	1.2	"BX669300 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0029.e.02 5prim, mRNA sequence /clone=scac0029.e.02 /clone_end=5' /gb=BX669300 /gi=117784202 /ug=Ssc.1742 /len=796"	-	-	-	-
gnl|UG|Ssc#S46877283	74	21.3	16	4.57	69	20.74	"PREDICTED: Sus scrofa PDZ and LIM domain 1 (PDLIM1), mRNA /cds=p(1,1311) /gb=XM_001924615 /gi=311271670 /ug=Ssc.3996 /len=1661"	GO:0043234//protein complex;GO:0043232	GO:0003712//transcription cofactor activity;GO:0046914//transition metal ion binding	"GO:0006351//transcription, DNA-dependent;GO:0006950//response to stress"	gi|194041759|ref|XP_001924650.1|/0/PREDICTED: PDZ and LIM domain protein 1 [Sus scrofa]
gnl|UG|Ssc#S58312757	53	15.26	8	2.29	36	10.82	"PREDICTED: Sus scrofa alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B-like (LOC100521073), mRNA /cds=p(254,1900) /gb=XM_003123649 /gi=311249554 /ug=Ssc.12785 /len=2362"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0043169//cation binding;GO:0008375//acetylglucosaminyltransferase activity	GO:0006487//protein N-linked glycosylation	"gi|119574174|gb|EAW53789.1|/0/mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B, isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S35165405	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:UTR010032E03, expressed in uterus /gb=AK240116 /gi=115554321 /ug=Ssc.30874 /len=1509"	-	-	-	-
gnl|UG|Ssc#S58304978	11	3.17	29	8.29	31	9.32	"PREDICTED: Sus scrofa leprecan-like 4 (LEPREL4), mRNA /cds=p(426,1760) /gb=XM_003131416 /gi=311267229 /ug=Ssc.26172 /len=2143"	GO:0000794//condensed nuclear chromosome	-	GO:0007129//synapsis	gi|311267230|ref|XP_003131464.1|/0/PREDICTED: synaptonemal complex protein SC65-like [Sus scrofa]
gnl|UG|Ssc#S58305834	4	1.15	4	1.14	0	0	"PREDICTED: Sus scrofa uncharacterized protein C1orf101-like (LOC100514914), mRNA /cds=p(4,2859) /gb=XM_003130564 /gi=311265349 /ug=Ssc.33945 /len=3137"	GO:0031224//intrinsic to membrane	-	-	gi|311265350|ref|XP_003130612.1|/0/PREDICTED: uncharacterized protein C1orf101-like [Sus scrofa]
gnl|UG|Ssc#S58313386	0	0	0	0	0	0	"PREDICTED: Sus scrofa casein kinase 1, gamma 2 (CSNK1G2), mRNA /cds=p(341,1570) /gb=XM_003123001 /gi=311248280 /ug=Ssc.21784 /len=2444"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0005515//protein binding;GO:0004672//protein kinase activity;GO:0032559	GO:0006643//membrane lipid metabolic process;GO:0007166//cell surface receptor linked signaling pathway;GO:0006468//protein phosphorylation	gi|311248281|ref|XP_003123049.1|/0/PREDICTED: casein kinase I isoform gamma-2-like [Sus scrofa]
gnl|UG|Ssc#S6081913	16	4.61	6	1.72	7	2.1	"MI-P-CP1-nzc-g-06-0-UI.s1 MI-P-CP1 Sus scrofa cDNA clone MI-P-CP1-nzc-g-06-0-UI 3', mRNA sequence /clone=MI-P-CP1-nzc-g-06-0-UI /clone_end=3' /gb=BQ604597 /gi=21551323 /ug=Ssc.82222 /len=718"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016702//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;GO:0043169//cation binding"	GO:0008152//metabolic process	gi|194042712|ref|XP_001927407.1|/2.97219e-118/PREDICTED: 2-aminoethanethiol dioxygenase-like [Sus scrofa]
gnl|UG|Ssc#S46880874	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa intraflagellar transport 74 homolog (Chlamydomonas) (IFT74), mRNA /cds=p(314,2116) /gb=XM_001926143 /gi=311245682 /ug=Ssc.38672 /len=2392"	GO:0031410//cytoplasmic vesicle;GO:0030990;GO:0019861//flagellum	-	-	gi|311245683|ref|XP_001926178.2|/0/PREDICTED: intraflagellar transport protein 74 homolog [Sus scrofa]
gnl|UG|Ssc#S55325328	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:PTG010046E08, expressed in pituitary gland /gb=AK349323 /gi=288779498 /ug=Ssc.89561 /len=2287"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016706//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0005506//iron ion binding"	GO:0009888//tissue development;GO:0035513;GO:0006281//DNA repair;GO:0043576//regulation of respiratory gaseous exchange;GO:0035511//oxidative DNA demethylation;GO:0035264//multicellular organism growth;GO:0070344;GO:0019915//lipid storage;GO:0048871//multicellular organismal homeostasis	gi|167215652|emb|CAP91069.1|/0/FTO protein [Sus scrofa]
gnl|UG|Ssc#S55319614	352	101.34	293	83.75	395	118.71	"Sus scrofa mRNA, clone:LVRM10129B11, expressed in liver /gb=AK346277 /gi=288785270 /ug=Ssc.2442 /len=3329"	GO:0030120//vesicle coat;GO:0005798//Golgi-associated vesicle	GO:0005488//binding	GO:0051704;GO:0048200;GO:0015031//protein transport	"gi|73988865|ref|XP_534069.2|/0/PREDICTED: similar to coatomer protein complex, subunit beta [Canis familiaris]"
gnl|UG|Ssc#S16864712	9	2.59	3	0.86	9	2.7	"AU298703 full-length enriched pig cDNA library, neonatal, 5 weeks, hippocampus Sus scrofa cDNA clone hip_124_G12, mRNA sequence /clone=hip_124_G12 /clone_end=3' /gb=AU298703 /gi=34551141 /ug=Ssc.14072 /len=718"	-	-	-	-
gnl|UG|Ssc#S55327261	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVR010021E12, expressed in ovary /gb=AK347388 /gi=288576795 /ug=Ssc.15723 /len=1911"	-	-	-	-
gnl|UG|Ssc#S58306760	464	133.59	291	83.18	577	173.4	"PREDICTED: Sus scrofa ras-related protein Rab-6A-like (LOC100514172), mRNA /cds=p(417,1043) /gb=XM_003129634 /gi=311263460 /ug=Ssc.2820 /len=3287"	GO:0031982//vesicle;GO:0044431//Golgi apparatus part;GO:0000267//cell fraction;GO:0012505//endomembrane system	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0008047//enzyme activator activity;GO:0019899//enzyme binding	"GO:0007265//Ras protein signal transduction;GO:0043462//regulation of ATPase activity;GO:0042221//response to chemical stimulus;GO:0015031//protein transport;GO:0009207;GO:0000301//retrograde transport, vesicle recycling within Golgi;GO:0033365//protein localization to organelle;GO:0006479//protein methylation;GO:0072384"	gi|297717191|ref|XP_002834845.1|/1.02128e-121/PREDICTED: ras-related protein Rab-6C-like [Pongo abelii]
gnl|UG|Ssc#S58312303	8	2.3	5	1.43	4	1.2	"PREDICTED: Sus scrofa platelet-derived growth factor receptor, beta polypeptide (PDGFRB), mRNA /cds=p(1,3318) /gb=XM_003124101 /gi=311250491 /ug=Ssc.9595 /len=4984"	GO:0016021//integral to membrane	GO:0019838//growth factor binding;GO:0005017//platelet-derived growth factor receptor activity;GO:0004930//G-protein coupled receptor activity;GO:0070851//growth factor receptor binding;GO:0032559;GO:0019900//kinase binding	GO:0009611//response to wounding;GO:0006023;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0010557;GO:0033189//response to vitamin A;GO:0008283//cell proliferation;GO:0043627//response to estrogen stimulus;GO:0060537//muscle tissue development;GO:0000302//response to reactive oxygen species;GO:0043009//chordate embryonic development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0001932//regulation of protein phosphorylation;GO:0006935//chemotaxis;GO:0009887//organ morphogenesis;GO:0035270//endocrine system development;GO:0045767//regulation of anti-apoptosis;GO:0016477//cell migration;GO:0035556//intracellular signal transduction;GO:0048871//multicellular organismal homeostasis	gi|311250492|ref|XP_003124149.1|/0/PREDICTED: beta-type platelet-derived growth factor receptor [Sus scrofa]
gnl|UG|Ssc#S39763154	0	0	0	0	2	0.6	"ramn3511b_k4.y1 amn Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV858432 /gi=178507884 /ug=Ssc.44111 /len=674"	-	-	-	-
gnl|UG|Ssc#S58302783	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa protein FAM119A-like, transcript variant 2 (LOC100518583), mRNA /cds=p(297,770) /gb=XM_003133612 /gi=311272954 /ug=Ssc.11660 /len=1799"	GO:0031224//intrinsic to membrane	-	-	gi|74005275|ref|XP_860755.1|/2.92224e-84/PREDICTED: hypothetical protein XP_855662 isoform 2 [Canis familiaris]
gnl|UG|Ssc#S35166357	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10206A01, expressed in ovary /gb=AK236584 /gi=115553381 /ug=Ssc.5102 /len=2254"	GO:0030529//ribonucleoprotein complex;GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|311273877|ref|XP_003134081.1|/0/PREDICTED: 28S ribosomal protein S27, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S55322082	2	0.58	4	1.14	5	1.5	"Sus scrofa mRNA, clone:TCH010086H09, expressed in trachea /gb=AK351062 /gi=288782790 /ug=Ssc.11484 /len=2319"	GO:0000267//cell fraction;GO:0043231//intracellular membrane-bounded organelle	GO:0004175//endopeptidase activity;GO:0005488//binding;GO:0008238//exopeptidase activity	GO:0019538//protein metabolic process;GO:0042221//response to chemical stimulus	gi|73967297|ref|XP_537755.2|/0/PREDICTED: similar to Bleomycin hydrolase (BLM hydrolase) (BMH) (BH) [Canis familiaris]
gnl|UG|Ssc#S58308892	8	2.3	2	0.57	11	3.31	"PREDICTED: Sus scrofa hypothetical protein LOC100511201 (LOC100511201), mRNA /cds=p(1,1308) /gb=XM_003127508 /gi=311258316 /ug=Ssc.80092 /len=1360"	-	-	-	gi|311258317|ref|XP_003127556.1|/0/PREDICTED: hypothetical protein LOC100511201 [Sus scrofa]
gnl|UG|Ssc#S55319509	6	1.73	5	1.43	9	2.7	"Sus scrofa mRNA, clone:THY010204E02, expressed in thymus /gb=AK352057 /gi=288785375 /ug=Ssc.7680 /len=1264"	GO:0043231//intracellular membrane-bounded organelle;GO:0031371//ubiquitin conjugating enzyme complex	"GO:0016879//ligase activity, forming carbon-nitrogen bonds;GO:0005488//binding"	"GO:0010975//regulation of neuron projection development;GO:0016567//protein ubiquitination;GO:0006282//regulation of DNA repair;GO:0031331;GO:0000738//DNA catabolic process, exonucleolytic;GO:0006301//postreplication repair;GO:0044089//positive regulation of cellular component biogenesis;GO:0043066//negative regulation of apoptosis"	gi|297268382|ref|XP_001095968.2|/2.75101e-80/PREDICTED: ubiquitin-conjugating enzyme E2 variant 2-like [Macaca mulatta]
gnl|UG|Ssc#S39939445	42	12.09	34	9.72	39	11.72	"rcte09_n19.y1 cte Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW034510 /gi=181219456 /ug=Ssc.66049 /len=579"	-	-	-	-
gnl|UG|Ssc#S17500366	0	0	5	1.43	0	0	"856472 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF787822 /gi=37792383 /ug=Ssc.83401 /len=600"	-	-	-	-
gnl|UG|Ssc#S55322828	14	4.03	0	0	4	1.2	"Sus scrofa mRNA, clone:TCH010015G05, expressed in trachea /gb=AK350715 /gi=288782044 /ug=Ssc.24969 /len=1937"	GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|73980888|ref|XP_532968.2|/1.86805e-99/PREDICTED: hypothetical protein XP_532968 [Canis familiaris]
gnl|UG|Ssc#S24317997	0	0	5	1.43	4	1.2	"Sus scrofa COL5A1 mRNA for procollagen alpha 1(V), complete cds /cds=p(5,5527) /gb=AB191303 /gi=62086215 /ug=Ssc.82561 /len=5883"	GO:0005581//collagen	GO:0005515//protein binding	GO:0016477//cell migration;GO:0050896//response to stimulus;GO:0009887//organ morphogenesis;GO:0009059//macromolecule biosynthetic process;GO:0030198//extracellular matrix organization	gi|62461592|ref|NP_001014971.1|/0/collagen alpha-1(V) chain [Sus scrofa]
gnl|UG|Ssc#S46875946	323	92.99	176	50.31	347	104.28	"PREDICTED: Sus scrofa RNA binding motif protein 39, transcript variant 2 (RBM39), mRNA /cds=p(302,1876) /gb=XM_001925247 /gi=311274785 /ug=Ssc.15159 /len=3714"	-	-	-	-
gnl|UG|Ssc#S23213069	9	2.59	3	0.86	15	4.51	"Sus scrofa clone Clu_4557.scr.msk.p1.Contig1, mRNA sequence /gb=AY609939 /gi=52351509 /ug=Ssc.39947 /len=2176"	GO:0030134//ER to Golgi transport vesicle	GO:0046872//metal ion binding	GO:0006810//transport;GO:0043436;GO:0006487//protein N-linked glycosylation	gi|296479143|gb|DAA21258.1|/3.02019e-70/MCFD2 protein-like [Bos taurus]
gnl|UG|Ssc#S58310618	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa ADAMTS-like 4 (ADAMTSL4), mRNA /cds=p(1,3195) /gb=XM_003125799 /gi=311254371 /ug=Ssc.79684 /len=3195"	-	-	-	-
gnl|UG|Ssc#S58300915	0	0	0	0	0	0	"PREDICTED: Sus scrofa ATP-binding cassette sub-family D member 1-like (LOC100519698), partial mRNA /cds=p(1,1263) /gb=XM_003135474 /gi=311277176 /ug=Ssc.94164 /len=1263"	GO:0031231	GO:0005515//protein binding;GO:0005324//long-chain fatty acid transporter activity;GO:0017111//nucleoside-triphosphatase activity;GO:0015405;GO:0032559	GO:0006635//fatty acid beta-oxidation;GO:0015909//long-chain fatty acid transport;GO:0043574;GO:0009207;GO:0006996//organelle organization;GO:0015915	"gi|311277177|ref|XP_003135522.1|/0/PREDICTED: ATP-binding cassette sub-family D member 1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S29979830	0	0	4	1.14	3	0.9	"PDUts1152F02 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1152F02 5' similar to homologue to ref|NM_016463.5| Homo sapiens CXXC finger 5 (CXXC5), mRNA, mRNA sequence /clone=PDUts1152F02 /clone_end=5' /gb=CV876488 /gi=84130448 /ug=Ssc.12926 /len=621"	-	-	-	gi|119582498|gb|EAW62094.1|/4.14017e-08/hCG2045144 [Homo sapiens]
gnl|UG|Ssc#S18272408	2	0.58	0	0	0	0	"BP168899 full-length enriched swine cDNA library, adult thymus Sus scrofa cDNA clone THY010060H08 5', mRNA sequence /clone=THY010060H08 /clone_end=5' /gb=BP168899 /gi=40418372 /ug=Ssc.72948 /len=818"	GO:0031981//nuclear lumen	GO:0005515//protein binding	GO:0006915//apoptosis;GO:0002200	gi|301758709|ref|XP_002915214.1|/6.39791e-150/PREDICTED: beta-catenin-like protein 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20116606	12	3.45	15	4.29	7	2.1	"Sus scrofa Janus kinase 2 (JAK2), mRNA /cds=p(317,3712) /gb=NM_214113 /gi=47523033 /ug=Ssc.324 /len=4812"	GO:0034399//nuclear periphery;GO:0043232;GO:0005626//insoluble fraction;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0005506//iron ion binding;GO:0051427;GO:0035400;GO:0019900//kinase binding;GO:0032559;GO:0005126//cytokine receptor binding;GO:0019904//protein domain specific binding	"GO:0031958;GO:0042506//tyrosine phosphorylation of Stat5 protein;GO:0007162//negative regulation of cell adhesion;GO:0032611;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0035406;GO:0031349//positive regulation of defense response;GO:0008016//regulation of heart contraction;GO:0043523//regulation of neuron apoptosis;GO:0051100//negative regulation of binding;GO:0009967//positive regulation of signal transduction;GO:0031328//positive regulation of cellular biosynthetic process;GO:0016477//cell migration;GO:0060429//epithelium development;GO:0007409//axonogenesis;GO:0001934//positive regulation of protein phosphorylation;GO:0006979//response to oxidative stress;GO:0030099//myeloid cell differentiation;GO:0000060//protein import into nucleus, translocation;GO:0007599//hemostasis;GO:0045595//regulation of cell differentiation;GO:0008629//induction of apoptosis by intracellular signals;GO:0001959//regulation of cytokine-mediated signaling pathway;GO:0008283//cell proliferation;GO:0010922//positive regulation of phosphatase activity;GO:0050796//regulation of insulin secretion;GO:0000165//MAPKKK cascade;GO:0042503//tyrosine phosphorylation of Stat3 protein;GO:0043388//positive regulation of DNA binding;GO:0051480//cytosolic calcium ion homeostasis;GO:0042976//activation of Janus kinase activity"	gi|47523034|ref|NP_999278.1|/0/tyrosine-protein kinase JAK2 [Sus scrofa]
gnl|UG|Ssc#S58314920	8	2.3	13	3.72	6	1.8	"PREDICTED: Sus scrofa GRINL1A complex locus (GCOM1), mRNA /cds=p(1,1563) /gb=XM_003121484 /gi=311244666 /ug=Ssc.21181 /len=4213"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0044297//cell body	GO:0034062//RNA polymerase activity	GO:0051657	gi|311244667|ref|XP_003121532.1|/0/PREDICTED: GRINL1A complex locus protein 1 [Sus scrofa]
gnl|UG|Ssc#S46876702	5	1.44	10	2.86	16	4.81	"PREDICTED: Sus scrofa BRCA1 associated protein (BRAP), mRNA /cds=p(1,1779) /gb=XM_001929550 /gi=311270636 /ug=Ssc.30268 /len=2099"	GO:0043234//protein complex;GO:0044424//intracellular part	GO:0005048//signal sequence binding;GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0019787//small conjugating protein ligase activity	GO:0007243//intracellular protein kinase cascade;GO:0032446//protein modification by small protein conjugation;GO:0007264//small GTPase mediated signal transduction	gi|194042959|ref|XP_001929585.1|/0/PREDICTED: BRCA1-associated protein [Sus scrofa]
gnl|UG|Ssc#S35167655	123	35.41	125	35.73	157	47.18	"Sus scrofa mRNA, clone:THY010088C08, expressed in thymus /gb=AK239277 /gi=115552084 /ug=Ssc.16453 /len=1293"	-	-	-	-
gnl|UG|Ssc#S17518688	5	1.44	0	0	0	0	"BX673258 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0043.g.05 5prim, mRNA sequence /clone=scac0043.g.05 /clone_end=5' /gb=BX673258 /gi=90238575 /ug=Ssc.4037 /len=860"	-	-	-	-
gnl|UG|Ssc#S45454080	2	0.58	0	0	0	0	"Sus scrofa WD repeat domain 62 (WDR62), mRNA /cds=p(91,4716) /gb=NM_001128461 /gi=190360680 /ug=Ssc.49649 /len=4780"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0021543//pallium development	gi|190360681|ref|NP_001121933.1|/0/WD repeat-containing protein 62 [Sus scrofa]
gnl|UG|Ssc#S46877016	3	0.86	2	0.57	11	3.31	"PREDICTED: Sus scrofa DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 (DDX21), mRNA /cds=p(1,2535) /gb=XM_001928772 /gi=311271295 /ug=Ssc.80191 /len=2535"	GO:0031981//nuclear lumen	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0003724//RNA helicase activity;GO:0032559"	GO:0009207	gi|311271296|ref|XP_001928807.2|/0/PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus scrofa]
gnl|UG|Ssc#S58302322	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa pantothenate kinase 3-like (LOC100512746), mRNA /cds=p(66,1178) /gb=XM_003134072 /gi=311273961 /ug=Ssc.41528 /len=1178"	GO:0031981//nuclear lumen	GO:0016301//kinase activity;GO:0032559	GO:0009108//coenzyme biosynthetic process;GO:0006796//phosphate metabolic process	gi|311273962|ref|XP_003134120.1|/0/PREDICTED: pantothenate kinase 3-like [Sus scrofa]
gnl|UG|Ssc#S35166390	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10090A04, expressed in liver /gb=AK233146 /gi=115553348 /ug=Ssc.2290 /len=1390"	GO:0043231//intracellular membrane-bounded organelle	GO:0016462//pyrophosphatase activity;GO:0032559	GO:0009408//response to heat	gi|73988006|ref|XP_850367.1|/0/PREDICTED: similar to suppressor of potassium transport defect 3 isoform 2 [Canis familiaris]
gnl|UG|Ssc#S55294196	0	0	0	0	3	0.9	"FS672455 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010017B02 5', mRNA sequence /clone=KDN010017B02 /clone_end=5' /gb=FS672455 /gi=288290701 /ug=Ssc.93485 /len=987"	GO:0031224//intrinsic to membrane;GO:0019866//organelle inner membrane	"GO:0042625//ATPase activity, coupled to transmembrane movement of ions;GO:0046872//metal ion binding;GO:0005548//phospholipid transporter activity;GO:0032559"	GO:0009206;GO:0006811//ion transport;GO:0006869//lipid transport;GO:0009207	gi|194222619|ref|XP_001496842.2|/9.67328e-106/PREDICTED: similar to Probable phospholipid-transporting ATPase IF (ATPase class I type 11B) (ATPase IR) [Equus caballus]
gnl|UG|Ssc#S20938015	0	0	0	0	2	0.6	"AJ649738 CSEQRAN19 Sus scrofa cDNA clone C0003273_F08, mRNA sequence /clone=C0003273_F08 /gb=AJ649738 /gi=49326583 /ug=Ssc.85622 /len=509"	GO:0030176//integral to endoplasmic reticulum membrane	GO:0005488//binding;GO:0016787//hydrolase activity	GO:0006497//protein lipidation	gi|54633340|ref|NP_001006602.1|/2.43123e-64/GPI transamidase component PIG-S [Rattus norvegicus]
gnl|UG|Ssc#S40053558	0	0	0	0	2	0.6	"rese36c_p10.y1 ese Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW148465 /gi=182568219 /ug=Ssc.79387 /len=561"	-	-	-	-
gnl|UG|Ssc#S35170399	179	51.53	53	15.15	86	25.85	"Sus scrofa mRNA, clone:OVRM10084F03, expressed in ovary /gb=AK235462 /gi=115549440 /ug=Ssc.4994 /len=1551"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0019899//enzyme binding;GO:0090079;GO:0043566//structure-specific DNA binding	GO:0006952//defense response;GO:0051707//response to other organism;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0002698;GO:0000377;GO:0001818//negative regulation of cytokine production	gi|293358795|ref|XP_575592.2|/0/PREDICTED: poly(rC) binding protein 1-like [Rattus norvegicus]
gnl|UG|Ssc#S35164406	4	1.15	0	0	4	1.2	"Sus scrofa mRNA, clone:MLN010072C12, expressed in mesenteric lymph node /gb=AK233935 /gi=115555320 /ug=Ssc.23459 /len=1345"	GO:0031981//nuclear lumen;GO:0005740//mitochondrial envelope	GO:0016301//kinase activity;GO:0032559	GO:0006575//cellular modified amino acid metabolic process;GO:0009108//coenzyme biosynthetic process;GO:0006796//phosphate metabolic process;GO:0006766//vitamin metabolic process	"gi|297706587|ref|XP_002830113.1|/1.9139e-119/PREDICTED: pantothenate kinase 2, mitochondrial-like, partial [Pongo abelii]"
gnl|UG|Ssc#S35165763	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10094A05, expressed in liver /gb=AK233172 /gi=115553963 /ug=Ssc.21943 /len=2705"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0032561	GO:0008366//axon ensheathment;GO:0006810//transport;GO:0035556//intracellular signal transduction;GO:0023051	gi|125630721|ref|NP_001075014.1|/6.26939e-145/ras-related protein Rab-40C [Bos taurus]
gnl|UG|Ssc#S35170738	25	7.2	23	6.57	28	8.41	"Sus scrofa mRNA, clone:TCH010076B11, expressed in trachea /gb=AK238290 /gi=115549101 /ug=Ssc.72699 /len=1760"	GO:0043231//intracellular membrane-bounded organelle	"GO:0008641//small protein activating enzyme activity;GO:0030528//transcription regulator activity;GO:0005102//receptor binding;GO:0016879//ligase activity, forming carbon-nitrogen bonds;GO:0046983//protein dimerization activity;GO:0032559"	"GO:0000278//mitotic cell cycle;GO:0032446//protein modification by small protein conjugation;GO:0006355//regulation of transcription, DNA-dependent"	gi|301778052|ref|XP_002924443.1|/0/PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35167400	22	6.33	26	7.43	0	0	"Sus scrofa mRNA, clone:LVRM10017D11, expressed in liver /gb=AK232744 /gi=115552339 /ug=Ssc.37 /len=1517"	GO:0043234//protein complex;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity;GO:0005515//protein binding	GO:0010727//negative regulation of hydrogen peroxide metabolic process;GO:0000302//response to reactive oxygen species;GO:0008219//cell death;GO:0006875//cellular metal ion homeostasis;GO:0019538//protein metabolic process;GO:0043086//negative regulation of catalytic activity	gi|47522826|ref|NP_999165.1|/0/haptoglobin precursor [Sus scrofa]
gnl|UG|Ssc#S55321454	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:TES010073D11, expressed in testis /gb=AK351302 /gi=288783418 /ug=Ssc.26349 /len=1301"	GO:0005622//intracellular	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding	-	gi|194216058|ref|XP_001917872.1|/8.8451e-106/PREDICTED: similar to hCG2042243 [Equus caballus]
gnl|UG|Ssc#S55326094	6	1.73	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10203D05, expressed in ovary /gb=AK348557 /gi=288778732 /ug=Ssc.17920 /len=2420"	-	-	-	gi|194038648|ref|XP_001926344.1|/1.7513e-74/PREDICTED: uncharacterized protein C15orf17-like [Sus scrofa]
gnl|UG|Ssc#S52128948	18	5.18	2	0.57	7	2.1	"Sus scrofa jumonji domain-containing 2A mRNA, partial cds /cds=p(1,601) /gb=EU661937 /gi=197692941 /ug=Ssc.74972 /len=1309"	GO:0005815//microtubule organizing center;GO:0031981//nuclear lumen	"GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0016706//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	"GO:0051704;GO:0070076//histone lysine demethylation;GO:0006351//transcription, DNA-dependent"	gi|197692942|gb|ACH71259.1|/9.24447e-103/jumonji domain-containing 2A [Sus scrofa]
gnl|UG|Ssc#S43509693	0	0	3	0.86	0	0	"Sus scrofa phosphoglycerate dehydrogenase (PHGDH), mRNA /cds=p(151,1752) /gb=NM_001123162 /gi=178056549 /ug=Ssc.21431 /len=1904"	-	"GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0000166//nucleotide binding"	GO:0007417//central nervous system development;GO:0007049//cell cycle;GO:0030030//cell projection organization;GO:0006790//sulfur compound metabolic process;GO:0009064//glutamine family amino acid metabolic process;GO:0010001//glial cell differentiation;GO:0008652//cellular amino acid biosynthetic process;GO:0006563//L-serine metabolic process;GO:0010467//gene expression;GO:0009066//aspartate family amino acid metabolic process	gi|178056550|ref|NP_001116634.1|/0/D-3-phosphoglycerate dehydrogenase [Sus scrofa]
gnl|UG|Ssc#S23213387	579	166.7	911	260.41	777	233.51	"Sus scrofa clone Clu_2025.scr.msk.p1.Contig1, mRNA sequence /gb=AY609590 /gi=52351185 /ug=Ssc.4829 /len=2782"	GO:0044424//intracellular part	GO:0015036//disulfide oxidoreductase activity	GO:0018904;GO:0051234//establishment of localization;GO:0006091//generation of precursor metabolites and energy;GO:0019725//cellular homeostasis	gi|296473677|gb|DAA15792.1|/3.53284e-167/thioredoxin-like 1 [Bos taurus]
gnl|UG|Ssc#S35170702	85	24.47	40	11.43	38	11.42	"Sus scrofa mRNA, clone:TCH010083F09, expressed in trachea /gb=AK238326 /gi=115549137 /ug=Ssc.548 /len=1265"	GO:0031012//extracellular matrix	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding	GO:0042742//defense response to bacterium;GO:0019538//protein metabolic process;GO:0002776;GO:0008283//cell proliferation;GO:0032963//collagen metabolic process;GO:0042221//response to chemical stimulus	gi|5771541|dbj|BAA83518.1|/2.35475e-156/matrilysin [Sus scrofa]
gnl|UG|Ssc#S46875760	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa NF-kappa-B-repressing factor-like (LOC100155370), mRNA /cds=p(1,2304) /gb=XM_001927183 /gi=311276874 /ug=Ssc.93974 /len=2304"	GO:0031981//nuclear lumen	GO:0003723//RNA binding;GO:0016564//transcription repressor activity	GO:0010467//gene expression	gi|311276875|ref|XP_001927218.2|/0/PREDICTED: NF-kappa-B-repressing factor-like [Sus scrofa]
gnl|UG|Ssc#S6090793	46	13.24	22	6.29	13	3.91	"Sus scrofa chloride-bicarbonate anion exchanger AE2 (AE2) mRNA, partial cds /cds=p(1,1869) /gb=AF120099 /gi=6007613 /ug=Ssc.340 /len=1999"	GO:0044459//plasma membrane part;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0015301//anion:anion antiporter activity;GO:0015103//inorganic anion transmembrane transporter activity	GO:0015698//inorganic anion transport	gi|6007614|gb|AAF00977.1|AF120099_1/0/chloride-bicarbonate anion exchanger AE2 [Sus scrofa]
gnl|UG|Ssc#S58304815	3	0.86	2	0.57	2	0.6	"PREDICTED: Sus scrofa xylosyltransferase 2-like (LOC100514793), mRNA /cds=p(1,2595) /gb=XM_003131582 /gi=311267562 /ug=Ssc.80614 /len=3460"	GO:0012505//endomembrane system;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0035252//UDP-xylosyltransferase activity	GO:0006023	gi|311267563|ref|XP_003131630.1|/0/PREDICTED: LOW QUALITY PROTEIN: xylosyltransferase 2-like [Sus scrofa]
gnl|UG|Ssc#S58304589	4	1.15	6	1.72	0	0	"PREDICTED: Sus scrofa active breakpoint cluster region-related protein-like (LOC100522463), partial mRNA /cds=p(1,2507) /gb=XM_003131809 /gi=311268032 /ug=Ssc.9158 /len=5017"	GO:0044444//cytoplasmic part	GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0008047//enzyme activator activity;GO:0005488//binding	GO:0006917//induction of apoptosis;GO:0007266//Rho protein signal transduction;GO:0009966//regulation of signal transduction;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	"gi|311268033|ref|XP_003131857.1|/0/PREDICTED: active breakpoint cluster region-related protein-like, partial [Sus scrofa]"
gnl|UG|Ssc#S23213583	9	2.59	2	0.57	10	3.01	"Sus scrofa clone Clu_10137.scr.msk.p1.Contig2, mRNA sequence /gb=AY609394 /gi=52350678 /ug=Ssc.18436 /len=1725"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation;GO:0042221//response to chemical stimulus;GO:0008629//induction of apoptosis by intracellular signals;GO:0043066//negative regulation of apoptosis	gi|311269472|ref|XP_003132499.1|/9.26815e-56/PREDICTED: RING-box protein 2-like [Sus scrofa]
gnl|UG|Ssc#S40058183	133	38.29	104	29.73	107	32.16	"reye1624b_n10.y1 eye Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW153090 /gi=182549691 /ug=Ssc.50673 /len=529"	-	-	-	gi|300872546|gb|ADK39026.1|/5.30124e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S23213378	34	9.79	49	14.01	16	4.81	"Sus scrofa clone Clu_20473.scr.msk.p1.Contig1, mRNA sequence /gb=AY609599 /gi=52351194 /ug=Ssc.4759 /len=1589"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0008134//transcription factor binding;GO:0005048//signal sequence binding;GO:0019899//enzyme binding	GO:0042348//NF-kappaB import into nucleus;GO:0010883//regulation of lipid storage;GO:0031325//positive regulation of cellular metabolic process;GO:0051091//positive regulation of transcription factor activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050851//antigen receptor-mediated signaling pathway;GO:0010742//macrophage derived foam cell differentiation;GO:0043331//response to dsRNA;GO:0042994//cytoplasmic sequestering of transcription factor;GO:0043433//negative regulation of transcription factor activity;GO:0045596//negative regulation of cell differentiation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0043066//negative regulation of apoptosis;GO:0070423;GO:0032494//response to peptidoglycan;GO:0008283//cell proliferation;GO:0002224//toll-like receptor signaling pathway;GO:0009409//response to cold;GO:0010874//regulation of cholesterol efflux;GO:0008593//regulation of Notch signaling pathway	gi|52346212|ref|NP_001005150.1|/1.47684e-169/NF-kappa-B inhibitor alpha [Sus scrofa]
gnl|UG|Ssc#S46876343	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa ubiquitin specific peptidase 40 (USP40), mRNA /cds=p(1,2928) /gb=XM_001925613 /gi=311273273 /ug=Ssc.36521 /len=2928"	-	GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0019941//modification-dependent protein catabolic process	gi|311273274|ref|XP_001925648.2|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 40 [Sus scrofa]
gnl|UG|Ssc#S46875911	15	4.32	0	0	7	2.1	"PREDICTED: Sus scrofa intraflagellar transport 52 homolog (Chlamydomonas) (IFT52), mRNA /cds=p(227,1567) /gb=XM_001924508 /gi=194044601 /ug=Ssc.21557 /len=2056"	GO:0030990;GO:0019861//flagellum	GO:0005515//protein binding	GO:0003002//regionalization;GO:0003143//embryonic heart tube morphogenesis;GO:0001838//embryonic epithelial tube formation;GO:0030162//regulation of proteolysis;GO:0009855//determination of bilateral symmetry;GO:0007166//cell surface receptor linked signaling pathway;GO:0030326//embryonic limb morphogenesis	gi|194044602|ref|XP_001924543.1|/0/PREDICTED: intraflagellar transport protein 52 homolog [Sus scrofa]
gnl|UG|Ssc#S58310784	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa aspartyl/asparaginyl beta-hydroxylase-like (LOC100526167), mRNA /cds=p(1,1293) /gb=XM_003125614 /gi=311253793 /ug=Ssc.34833 /len=2254"	GO:0031227//intrinsic to endoplasmic reticulum membrane	"GO:0046872//metal ion binding;GO:0016706//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0005198//structural molecule activity"	GO:0018126//protein hydroxylation;GO:0003012//muscle system process;GO:0006874//cellular calcium ion homeostasis;GO:0035107//appendage morphogenesis;GO:0008283//cell proliferation	gi|311253794|ref|XP_003125662.1|/0/PREDICTED: aspartyl/asparaginyl beta-hydroxylase-like [Sus scrofa]
gnl|UG|Ssc#S58310453	4	1.15	0	0	4	1.2	"PREDICTED: Sus scrofa topoisomerase (DNA) I, mitochondrial (TOP1MT), mRNA /cds=p(1,1632) /gb=XM_003125950 /gi=311254892 /ug=Ssc.28969 /len=1632"	GO:0031981//nuclear lumen;GO:0043025//neuronal cell body;GO:0005759//mitochondrial matrix;GO:0005694//chromosome	GO:0003916//DNA topoisomerase activity;GO:0003682//chromatin binding;GO:0032559;GO:0043566//structure-specific DNA binding	GO:0006261//DNA-dependent DNA replication;GO:0009790//embryo development	"gi|311254893|ref|XP_003125998.1|/0/PREDICTED: DNA topoisomerase I, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58307500	6	1.73	2	0.57	8	2.4	"PREDICTED: Sus scrofa stromal interaction molecule 2-like (LOC100519497), mRNA /cds=p(1,2073) /gb=XM_003128897 /gi=311261955 /ug=Ssc.55467 /len=3260"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0046872//metal ion binding;GO:0016247//channel regulator activity	GO:0032236//positive regulation of calcium ion transport via store-operated calcium channel activity;GO:0006875//cellular metal ion homeostasis	gi|311261956|ref|XP_003128945.1|/0/PREDICTED: stromal interaction molecule 2-like [Sus scrofa]
gnl|UG|Ssc#S55324780	4	1.15	2	0.57	6	1.8	"Sus scrofa mRNA, clone:ADR010023C06, expressed in adrenal gland /gb=AK343276 /gi=288780092 /ug=Ssc.20344 /len=1866"	-	GO:0005488//binding	-	gi|311266774|ref|XP_003131239.1|/1.66535e-98/PREDICTED: WW domain-binding protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58308433	10	2.88	6	1.72	8	2.4	"PREDICTED: Sus scrofa Myb-like, SWIRM and MPN domains 1 (MYSM1), partial mRNA /cds=p(1,2115) /gb=XM_003127968 /gi=311259260 /ug=Ssc.50336 /len=2165"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0043169//cation binding;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0016790//thiolester hydrolase activity;GO:0005515//protein binding;GO:0019783//small conjugating protein-specific protease activity	"GO:0006355//regulation of transcription, DNA-dependent;GO:0016570//histone modification"	"gi|311259261|ref|XP_003128016.1|/0/PREDICTED: histone H2A deubiquitinase MYSM1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58307546	6	1.73	0	0	4	1.2	"PREDICTED: Sus scrofa apoptosis-related protein (PNAS-5), mRNA /cds=p(174,1334) /gb=XM_003128852 /gi=311261862 /ug=Ssc.27275 /len=1521"	GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|311261863|ref|XP_003128900.1|/1.26089e-162/PREDICTED: cell growth-regulating nucleolar protein [Sus scrofa]
gnl|UG|Ssc#S18332789	9	2.59	2	0.57	8	2.4	"BP459855 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRM10185F06 5', mRNA sequence /clone=OVRM10185F06 /clone_end=5' /gb=BP459855 /gi=40475359 /ug=Ssc.1267 /len=729"	-	-	-	-
gnl|UG|Ssc#S46876628	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa acetyl-CoA carboxylase beta (ACACB), mRNA /cds=p(271,7635) /gb=XM_001929270 /gi=311270798 /ug=Ssc.78710 /len=8424"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	"GO:0019842//vitamin binding;GO:0043169//cation binding;GO:0016879//ligase activity, forming carbon-nitrogen bonds;GO:0016421//CoA carboxylase activity;GO:0032559"	GO:0009893//positive regulation of metabolic process;GO:0051260//protein homooligomerization;GO:0003333//amino acid transmembrane transport;GO:0019217//regulation of fatty acid metabolic process;GO:0006732//coenzyme metabolic process;GO:0015980//energy derivation by oxidation of organic compounds;GO:0010033//response to organic substance	gi|194043113|ref|XP_001929305.1|/0/PREDICTED: acetyl-CoA carboxylase 2 [Sus scrofa]
gnl|UG|Ssc#S58306447	2	0.58	0	0	6	1.8	"PREDICTED: Sus scrofa Rho guanine nucleotide exchange factor (GEF) 12 (ARHGEF12), mRNA /cds=p(1,4848) /gb=XM_003129956 /gi=311264097 /ug=Ssc.18932 /len=5142"	GO:0044444//cytoplasmic part	GO:0005102//receptor binding;GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0008047//enzyme activator activity	GO:0043087//regulation of GTPase activity;GO:0007266//Rho protein signal transduction;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006917//induction of apoptosis;GO:0009966//regulation of signal transduction;GO:0006935//chemotaxis	gi|311264098|ref|XP_003130004.1|/0/PREDICTED: rho guanine nucleotide exchange factor 12-like [Sus scrofa]
gnl|UG|Ssc#S46881026	5	1.44	4	1.14	7	2.1	"PREDICTED: Sus scrofa F-box and WD repeat domain containing 2, transcript variant 1 (FBXW2), mRNA /cds=p(179,1543) /gb=XM_001927300 /gi=311246299 /ug=Ssc.43519 /len=2005"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation	gi|296190689|ref|XP_002743301.1|/0/PREDICTED: F-box/WD repeat-containing protein 2 [Callithrix jacchus]
gnl|UG|Ssc#S46916719	3	0.86	2	0.57	5	1.5	"Sus scrofa Kruppel-like factor 3 (KLF3) mRNA, complete cds /cds=p(334,1377) /gb=EU669073 /gi=240215620 /ug=Ssc.26233 /len=3363"	GO:0005622//intracellular	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent;GO:0032501//multicellular organismal process"	gi|296196724|ref|XP_002745964.1|/1.19584e-156/PREDICTED: krueppel-like factor 3-like [Callithrix jacchus]
gnl|UG|Ssc#S20116411	7	2.02	0	0	4	1.2	"Sus scrofa nuclear receptor subfamily 5, group A, member 1 (NR5A1), mRNA /cds=p(868,2253) /gb=NM_214179 /gi=47523441 /ug=Ssc.82462 /len=2934"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0003712//transcription cofactor activity;GO:0004879//ligand-dependent nuclear receptor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0008289//lipid binding;GO:0043566//structure-specific DNA binding	GO:0009755//hormone-mediated signaling pathway;GO:0006694//steroid biosynthetic process;GO:0008585//female gonad development;GO:0008584//male gonad development;GO:0022602//ovulation cycle process;GO:0007154//cell communication;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0048869;GO:0035270//endocrine system development	gi|47523442|ref|NP_999344.1|/0/steroidogenic factor 1 [Sus scrofa]
gnl|UG|Ssc#S21553233	41	11.8	26	7.43	50	15.03	"UMC-p4mm3-007-d01 4mm ovarian follicle p4mm Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO944638 /gi=51311397 /ug=Ssc.71704 /len=403"	-	-	-	-
gnl|UG|Ssc#S46878371	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa long-chain-fatty-acid--CoA ligase ACSBG1-like (LOC100156446), mRNA /cds=p(1,1983) /gb=XM_001925065 /gi=311260599 /ug=Ssc.5457 /len=2518"	GO:0031410//cytoplasmic vesicle;GO:0042579//microbody;GO:0042598//vesicular fraction	GO:0015645//fatty acid ligase activity;GO:0032559	GO:0008366//axon ensheathment;GO:0006631//fatty acid metabolic process;GO:0006915//apoptosis;GO:0031960//response to corticosteroid stimulus	gi|311260600|ref|XP_001925100.2|/0/PREDICTED: long-chain-fatty-acid--CoA ligase ACSBG1-like [Sus scrofa]
gnl|UG|Ssc#S46877519	3	0.86	3	0.86	0	0	"PREDICTED: Sus scrofa Protein FAM116A (LOC100152812), mRNA /cds=p(1,2160) /gb=XM_001926533 /gi=311269041 /ug=Ssc.6977 /len=4523"	-	-	-	gi|311269042|ref|XP_001926568.2|/0/PREDICTED: protein FAM116A [Sus scrofa]
gnl|UG|Ssc#S46877096	338	97.31	316	90.33	719	216.08	"PREDICTED: Sus scrofa TIA1 cytotoxic granule-associated RNA binding protein-like 1, transcript variant 1 (TIAL1), mRNA /cds=p(356,1483) /gb=XM_001928935 /gi=311271908 /ug=Ssc.56271 /len=2451"	GO:0000323//lytic vacuole;GO:0030529//ribonucleoprotein complex	GO:0030528//transcription regulator activity;GO:0003723//RNA binding	"GO:0012502//induction of programmed cell death;GO:0006355//regulation of transcription, DNA-dependent;GO:0051301//cell division;GO:0003006//developmental process involved in reproduction;GO:0008283//cell proliferation;GO:0006950//response to stress"	gi|4507499|ref|NP_003243.1|/0/nucleolysin TIAR isoform 1 [Homo sapiens]
gnl|UG|Ssc#S19550139	4	1.15	25	7.15	0	0	"997515 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN166255 /gi=46180685 /ug=Ssc.52154 /len=715"	-	-	-	gi|297462419|ref|XP_002702182.1|/6.27212e-44/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S23213201	3	0.86	0	0	0	0	"Sus scrofa clone Clu_32102.scr.msk.p1.Contig3, mRNA sequence /gb=AY609807 /gi=52351377 /ug=Ssc.54870 /len=1935"	GO:0005815//microtubule organizing center;GO:0030286//dynein complex;GO:0005874//microtubule;GO:0072372//primary cilium;GO:0005930//axoneme	GO:0017111//nucleoside-triphosphatase activity	GO:0010927;GO:0009855//determination of bilateral symmetry	gi|311252728|ref|XP_003125235.1|/0/PREDICTED: cytoplasmic dynein 2 light intermediate chain 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58308721	8	2.3	2	0.57	10	3.01	"PREDICTED: Sus scrofa serine/threonine-protein kinase PINK1, mitochondrial-like (LOC100515613), mRNA /cds=p(76,1842) /gb=XM_003127676 /gi=311258668 /ug=Ssc.21132 /len=3326"	GO:0031966//mitochondrial membrane;GO:0031224//intrinsic to membrane;GO:0019866//organelle inner membrane	GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0019904//protein domain specific binding;GO:0032559;GO:0019899//enzyme binding	"GO:0014046;GO:0006461//protein complex assembly;GO:0001963//synaptic transmission, dopaminergic;GO:0006468//protein phosphorylation;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0016567//protein ubiquitination;GO:0006914//autophagy;GO:0001836//release of cytochrome c from mitochondria"	"gi|311258669|ref|XP_003127724.1|/0/PREDICTED: serine/threonine-protein kinase PINK1, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S23766726	0	0	0	0	4	1.2	"1125234 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN124345 /gi=59818624 /ug=Ssc.1338 /len=767"	GO:0044444//cytoplasmic part	"GO:0016646//oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor;GO:0016628//oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor"	GO:0006787	gi|301776665|ref|XP_002923744.1|/7.56605e-102/PREDICTED: flavin reductase-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20939537	0	0	2	0.57	0	0	"AJ651260 CSEQRAN19 Sus scrofa cDNA clone C0003277_N04, mRNA sequence /clone=C0003277_N04 /gb=AJ651260 /gi=49333705 /ug=Ssc.85694 /len=524"	GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part	GO:0048037//cofactor binding;GO:0042802//identical protein binding;GO:0043169//cation binding;GO:0016453	GO:0007417//central nervous system development;GO:0010033//response to organic substance;GO:0043438//acetoacetic acid metabolic process;GO:0009063//cellular amino acid catabolic process;GO:0051259//protein oligomerization;GO:0072019//proximal convoluted tubule development;GO:0009719;GO:0006950//response to stress;GO:0044249//cellular biosynthetic process	"gi|135757|sp|P17764.1|THIL_RAT/4.03167e-36/RecName: Full=Acetyl-CoA acetyltransferase, mitochondrial; AltName: Full=Acetoacetyl-CoA thiolase; Flags: Precursor"
gnl|UG|Ssc#S46876643	2	0.58	0	0	5	1.5	"PREDICTED: Sus scrofa malectin-like (LOC100156249), mRNA /cds=p(63,932) /gb=XM_001928694 /gi=311270752 /ug=Ssc.9932 /len=986"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0006487//protein N-linked glycosylation	gi|301787029|ref|XP_002928933.1|/3.00936e-134/PREDICTED: malectin-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35167055	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10045H11, expressed in liver /gb=AK232889 /gi=115552684 /ug=Ssc.57601 /len=1975"	-	GO:0003677//DNA binding	"GO:0006351//transcription, DNA-dependent"	gi|74221030|dbj|BAE33673.1|/0/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S35171442	0	0	4	1.14	0	0	"Sus scrofa mRNA, clone:OVRM10041E03, expressed in ovary /gb=AK235014 /gi=115548397 /ug=Ssc.84277 /len=2817"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding	GO:0048514//blood vessel morphogenesis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0043009//chordate embryonic development;GO:0040007//growth;GO:0009887//organ morphogenesis;GO:0007568//aging;GO:0008284//positive regulation of cell proliferation;GO:0007028//cytoplasm organization	"gi|148669477|gb|EDL01424.1|/1.89605e-59/retinoic acid induced 17, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S31108406	0	0	0	0	2	0.6	"1517996 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY412244 /gi=87213547 /ug=Ssc.27856 /len=698"	-	-	-	-
gnl|UG|Ssc#S34534239	0	0	0	0	0	0	"Sus scrofa presenilin 2 (PSEN2) mRNA, complete cds /cds=p(1,1347) /gb=DQ853415 /gi=112361351 /ug=Ssc.54979 /len=1347"	"GO:0030427//site of polarized growth;GO:0005764//lysosome;GO:0032991//macromolecular complex;GO:0005626//insoluble fraction;GO:0012505//endomembrane system;GO:0019866//organelle inner membrane;GO:0044459//plasma membrane part;GO:0016021//integral to membrane;GO:0005815//microtubule organizing center;GO:0045202//synapse;GO:0030425//dendrite;GO:0000775//chromosome, centromeric region;GO:0031674//I band;GO:0044297//cell body"	GO:0070011;GO:0005488//binding	GO:0050804//regulation of synaptic transmission;GO:0001932//regulation of protein phosphorylation;GO:0044093;GO:0007420//brain development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050851//antigen receptor-mediated signaling pathway;GO:0070838//divalent metal ion transport;GO:0006516//glycoprotein catabolic process;GO:0002285;GO:0010469//regulation of receptor activity;GO:0007611//learning or memory;GO:0022405//hair cycle process;GO:0008544//epidermis development;GO:0043066//negative regulation of apoptosis;GO:0006941//striated muscle contraction;GO:0009952//anterior/posterior pattern formation;GO:0009953//dorsal/ventral pattern formation;GO:0045165//cell fate commitment;GO:0033619//membrane protein proteolysis;GO:0035108//limb morphogenesis;GO:0002521//leukocyte differentiation;GO:0051604//protein maturation;GO:0006950//response to stress;GO:0050818;GO:0009887//organ morphogenesis;GO:0006917//induction of apoptosis	gi|118403880|ref|NP_001072134.1|/0/presenilin-2 [Sus scrofa]
gnl|UG|Ssc#S58305089	14	4.03	20	5.72	13	3.91	"PREDICTED: Sus scrofa cell division cycle protein 27 homolog (LOC100517552), partial mRNA /cds=p(1,2227) /gb=XM_003131309 /gi=311267003 /ug=Ssc.21280 /len=3891"	GO:0031981//nuclear lumen;GO:0005815//microtubule organizing center;GO:0000152//nuclear ubiquitin ligase complex;GO:0005819//spindle	GO:0005488//binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0007050//cell cycle arrest;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	"gi|311267004|ref|XP_003131357.1|/0/PREDICTED: cell division cycle protein 27 homolog, partial [Sus scrofa]"
gnl|UG|Ssc#S35165697	2	0.58	2	0.57	3	0.9	"Sus scrofa mRNA, clone:LVRM10108E05, expressed in liver /gb=AK233238 /gi=115554029 /ug=Ssc.1346 /len=1394"	GO:0043234//protein complex	GO:0017111//nucleoside-triphosphatase activity;GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0009207;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030154//cell differentiation;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|301759269|ref|XP_002915483.1|/0/PREDICTED: 26S proteasome non-ATPase regulatory subunit 6-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55322173	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:DCI010116G08, expressed in dendritic cells (immature) /gb=AK344710 /gi=288782699 /ug=Ssc.10718 /len=2224"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0016653//oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;GO:0050664//oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor;GO:0005506//iron ion binding"	GO:0048856//anatomical structure development;GO:0009593//detection of chemical stimulus;GO:0030072//peptide hormone secretion;GO:0033500//carbohydrate homeostasis	gi|84000293|ref|NP_001033248.1|/0/cytochrome b5 reductase 4 [Bos taurus]
gnl|UG|Ssc#S58309154	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa glucocorticoid receptor DNA-binding factor 1-like (LOC100514580), mRNA /cds=p(161,4663) /gb=XM_003127240 /gi=311257784 /ug=Ssc.24936 /len=5421"	GO:0043231//intracellular membrane-bounded organelle;GO:0005856//cytoskeleton;GO:0044444//cytoplasmic part	GO:0004871//signal transducer activity;GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0005099//Ras GTPase activator activity	"GO:0006351//transcription, DNA-dependent;GO:0007166//cell surface receptor linked signaling pathway;GO:0014020;GO:0007420//brain development;GO:0042462//eye photoreceptor cell development;GO:0006935//chemotaxis;GO:0043114//regulation of vascular permeability;GO:0032319//regulation of Rho GTPase activity"	gi|311257785|ref|XP_003127288.1|/0/PREDICTED: LOW QUALITY PROTEIN: glucocorticoid receptor DNA-binding factor 1-like [Sus scrofa]
gnl|UG|Ssc#S58307916	6	1.73	5	1.43	4	1.2	"PREDICTED: Sus scrofa S phase cyclin A-associated protein in the endoplasmic reticulum-like (LOC100515388), mRNA /cds=p(101,3607) /gb=XM_003128484 /gi=311260741 /ug=Ssc.64186 /len=3607"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	-	gi|311260742|ref|XP_003128532.1|/0/PREDICTED: S phase cyclin A-associated protein in the endoplasmic reticulum-like [Sus scrofa]
gnl|UG|Ssc#S58303344	13	3.74	9	2.57	18	5.41	"PREDICTED: Sus scrofa ATP-dependent RNA helicase DDX50-like (LOC100519874), mRNA /cds=p(69,2285) /gb=XM_003133052 /gi=311271291 /ug=Ssc.58294 /len=2507"	GO:0031981//nuclear lumen	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0009207	gi|311271292|ref|XP_003133100.1|/0/PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
gnl|UG|Ssc#S35174238	193	55.57	123	35.16	184	55.3	"Sus scrofa mRNA, clone:AMP010029H03, expressed in alveolar macrophage /gb=AK230712 /gi=115545597 /ug=Ssc.33318 /len=1369"	GO:0043234//protein complex;GO:0034399//nuclear periphery;GO:0016020//membrane	GO:0003712//transcription cofactor activity;GO:0046914//transition metal ion binding;GO:0016564//transcription repressor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding	GO:0003002//regionalization;GO:0048592//eye morphogenesis;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0019218//regulation of steroid metabolic process	"gi|119602095|gb|EAW81689.1|/1.14102e-117/YY1 transcription factor, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S58307946	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa abhydrolase domain-containing protein FAM108C1-like (LOC100522555), mRNA /cds=p(1,993) /gb=XM_003128448 /gi=311260630 /ug=Ssc.9471 /len=2246"	-	GO:0070011	GO:0019538//protein metabolic process	gi|296204234|ref|XP_002749242.1|/1.97837e-165/PREDICTED: abhydrolase domain-containing protein FAM108C1-like isoform 1 [Callithrix jacchus]
gnl|UG|Ssc#S6091066	0	0	0	0	0	0	"Sus scrofa mRNA for catalase, complete cds /cds=p(35,1546) /gb=D89812 /gi=2988345 /ug=Ssc.1018 /len=2279"	GO:0016020//membrane;GO:0000323//lytic vacuole;GO:0005740//mitochondrial envelope;GO:0044439	"GO:0016811//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;GO:0000166//nucleotide binding;GO:0004601//peroxidase activity;GO:0042802//identical protein binding;GO:0005506//iron ion binding"	GO:0016125//sterol metabolic process;GO:0006639//acylglycerol metabolic process;GO:0042743//hydrogen peroxide metabolic process;GO:0051091//positive regulation of transcription factor activity;GO:0009411//response to UV;GO:0043433//negative regulation of transcription factor activity;GO:0051259//protein oligomerization;GO:0009967//positive regulation of signal transduction;GO:0045333//cellular respiration;GO:0006915//apoptosis;GO:0009112;GO:0006163//purine nucleotide metabolic process;GO:0006979//response to oxidative stress	gi|84028183|sp|O62839.4|CATA_PIG/0/RecName: Full=Catalase
gnl|UG|Ssc#S35166896	26	7.49	123	35.16	55	16.53	"Sus scrofa mRNA, clone:THY010103H02, expressed in thymus /gb=AK239437 /gi=115552843 /ug=Ssc.28087 /len=1623"	GO:0031981//nuclear lumen	GO:0005488//binding;GO:0004871//signal transducer activity;GO:0004725//protein tyrosine phosphatase activity	GO:0006470//protein dephosphorylation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0001959//regulation of cytokine-mediated signaling pathway	gi|190589918|gb|ACE79218.1|/0/non-receptor type T-cell protein tyrosine phosphatase transcript variant 1 [Sus scrofa]
gnl|UG|Ssc#S35168884	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10128E11, expressed in ovary /gb=AK235949 /gi=115550874 /ug=Ssc.1702 /len=2844"	GO:0009986//cell surface;GO:0031224//intrinsic to membrane	GO:0004888//transmembrane receptor activity	GO:0007186//G-protein coupled receptor protein signaling pathway	gi|296486668|gb|DAA28781.1|/0/G protein-coupled receptor 125-like [Bos taurus]
gnl|UG|Ssc#S35329631	3	0.86	0	0	4	1.2	"SusFleck_BF_0097_0100_5_pCNS_M09 SusFleck Backfat Sus scrofa cDNA clone 0097_0100_M09 5', mRNA sequence /clone=0097_0100_M09 /clone_end=5' /gb=DT328028 /gi=116347965 /ug=Ssc.90058 /len=811"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	-	-	gi|74001366|ref|XP_851430.1|/3.89394e-86/PREDICTED: similar to TAK1-like protein [Canis familiaris]
gnl|UG|Ssc#S46880790	2	0.58	0	0	5	1.5	"PREDICTED: Sus scrofa FERM domain containing 6 (FRMD6), mRNA /cds=p(1,1845) /gb=XM_001928323 /gi=311245490 /ug=Ssc.72276 /len=1940"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0043232	-	-	gi|194034446|ref|XP_001928358.1|/0/PREDICTED: FERM domain-containing protein 6 [Sus scrofa]
gnl|UG|Ssc#S19540267	3	0.86	4	1.14	2	0.6	"943759 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN156363 /gi=46170793 /ug=Ssc.56153 /len=894"	-	-	-	-
gnl|UG|Ssc#S58305342	9	2.59	0	0	4	1.2	"PREDICTED: Sus scrofa muscleblind-like protein 2-like (LOC100519915), mRNA /cds=p(1,1173) /gb=XM_003131055 /gi=311266464 /ug=Ssc.1604 /len=1280"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0010468//regulation of gene expression;GO:0006396//RNA processing	gi|311266465|ref|XP_003131103.1|/0/PREDICTED: muscleblind-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58305327	2	0.58	15	4.29	6	1.8	"PREDICTED: Sus scrofa transmembrane and TPR repeat-containing protein 4-like (LOC100524643), mRNA /cds=p(1,2841) /gb=XM_003131070 /gi=311266502 /ug=Ssc.24702 /len=3907"	GO:0031224//intrinsic to membrane	-	-	gi|311266503|ref|XP_003131118.1|/0/PREDICTED: transmembrane and TPR repeat-containing protein 4-like [Sus scrofa]
gnl|UG|Ssc#S46879716	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa neutral sphingomyelinase (N-SMase) activation associated factor (NSMAF), mRNA /cds=p(21,2759) /gb=XM_001927375 /gi=311253804 /ug=Ssc.22275 /len=3332"	GO:0000267//cell fraction;GO:0044424//intracellular part	GO:0004871//signal transducer activity;GO:0032813//tumor necrosis factor receptor superfamily binding;GO:0016004//phospholipase activator activity	GO:0019222//regulation of metabolic process;GO:0046519;GO:0023052//signaling	gi|311253805|ref|XP_001927410.2|/0/PREDICTED: protein FAN-like [Sus scrofa]
gnl|UG|Ssc#S58308566	4	1.15	0	0	3	0.9	"PREDICTED: Sus scrofa serine/threonine-protein phosphatase 4 regulatory subunit 1-like (LOC100520201), mRNA /cds=p(1,897) /gb=XM_003127836 /gi=311258985 /ug=Ssc.18518 /len=1830"	GO:0008287//protein serine/threonine phosphatase complex	GO:0043169//cation binding;GO:0016791//phosphatase activity;GO:0019888//protein phosphatase regulator activity	GO:0006464//protein modification process;GO:0023052//signaling	gi|311258986|ref|XP_003127884.1|/9.10732e-158/PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S16761951	2	0.58	0	0	0	0	"820804 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF359546 /gi=34156380 /ug=Ssc.83107 /len=519"	"GO:0030427//site of polarized growth;GO:0005764//lysosome;GO:0032991//macromolecular complex;GO:0005626//insoluble fraction;GO:0012505//endomembrane system;GO:0019866//organelle inner membrane;GO:0044459//plasma membrane part;GO:0016021//integral to membrane;GO:0005815//microtubule organizing center;GO:0045202//synapse;GO:0030425//dendrite;GO:0000775//chromosome, centromeric region;GO:0031674//I band;GO:0044297//cell body"	GO:0070011;GO:0005488//binding	GO:0050804//regulation of synaptic transmission;GO:0001932//regulation of protein phosphorylation;GO:0044093;GO:0007420//brain development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050851//antigen receptor-mediated signaling pathway;GO:0070838//divalent metal ion transport;GO:0006516//glycoprotein catabolic process;GO:0002285;GO:0010469//regulation of receptor activity;GO:0007611//learning or memory;GO:0022405//hair cycle process;GO:0008544//epidermis development;GO:0043066//negative regulation of apoptosis;GO:0006941//striated muscle contraction;GO:0009952//anterior/posterior pattern formation;GO:0009953//dorsal/ventral pattern formation;GO:0045165//cell fate commitment;GO:0033619//membrane protein proteolysis;GO:0035108//limb morphogenesis;GO:0002521//leukocyte differentiation;GO:0051604//protein maturation;GO:0006950//response to stress;GO:0050818;GO:0009887//organ morphogenesis;GO:0006917//induction of apoptosis	gi|297280647|ref|XP_001087264.2|/1.8118e-17/PREDICTED: presenilin-2 isoform 1 [Macaca mulatta]
gnl|UG|Ssc#S40414194	2	0.58	3	0.86	0	0	"rplac_18051.y1 pla Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW508801 /gi=183137304 /ug=Ssc.92294 /len=613"	GO:0043256//laminin complex	GO:0005102//receptor binding	GO:0042476//odontogenesis;GO:0030323//respiratory tube development;GO:2000026//regulation of multicellular organismal development;GO:0010927;GO:0001667//ameboidal cell migration;GO:0008544//epidermis development;GO:0007155//cell adhesion;GO:0061138;GO:0048754//branching morphogenesis of a tube;GO:0008283//cell proliferation;GO:0007166//cell surface receptor linked signaling pathway;GO:0000904//cell morphogenesis involved in differentiation	gi|296480898|gb|DAA23013.1|/8.94717e-101/laminin alpha 5-like [Bos taurus]
gnl|UG|Ssc#S55319203	6	1.73	3	0.86	21	6.31	"Sus scrofa mRNA, clone:LVRM10200D02, expressed in liver /gb=AK346489 /gi=288785681 /ug=Ssc.1199 /len=2948"	GO:0044439	GO:0033764;GO:0005496//steroid binding;GO:0005319//lipid transporter activity;GO:0016836//hydro-lyase activity	GO:0006869//lipid transport;GO:0006635//fatty acid beta-oxidation;GO:0006694//steroid biosynthetic process;GO:0003006//developmental process involved in reproduction	gi|47523670|ref|NP_999471.1|/0/peroxisomal multifunctional enzyme type 2 [Sus scrofa]
gnl|UG|Ssc#S58308862	0	0	0	0	0	0	"PREDICTED: Sus scrofa kelch-like protein 21-like (LOC100517100), mRNA /cds=p(70,1872) /gb=XM_003127535 /gi=311258377 /ug=Ssc.95819 /len=1872"	GO:0031461//cullin-RING ubiquitin ligase complex;GO:0000922//spindle pole	GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation;GO:0000087//M phase of mitotic cell cycle	gi|311258378|ref|XP_003127583.1|/0/PREDICTED: LOW QUALITY PROTEIN: kelch-like protein 21-like [Sus scrofa]
gnl|UG|Ssc#S58306046	0	0	0	0	0	0	"PREDICTED: Sus scrofa xenotropic and polytropic retrovirus receptor 1 (XPR1), partial mRNA /cds=p(1,1970) /gb=XM_003130352 /gi=311264918 /ug=Ssc.76684 /len=1970"	GO:0016021//integral to membrane	GO:0004888//transmembrane receptor activity	GO:0007166//cell surface receptor linked signaling pathway;GO:0051707//response to other organism	"gi|311264919|ref|XP_003130400.1|/0/PREDICTED: xenotropic and polytropic retrovirus receptor 1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58308898	29	8.35	12	3.43	9	2.7	"PREDICTED: Sus scrofa ATPase family AAA domain-containing protein 3-like (LOC100525876), mRNA /cds=p(25,1656) /gb=XM_003127504 /gi=311258304 /ug=Ssc.17027 /len=2292"	-	-	-	-
gnl|UG|Ssc#S35336616	4	1.15	10	2.86	2	0.6	"SusFleck_BFN_0001_0004_5_pCNS_F18 SusFleck Backfat Normalized Sus scrofa cDNA clone 0001_0004_F18 5', mRNA sequence /clone=0001_0004_F18 /clone_end=5' /gb=DT335013 /gi=116350876 /ug=Ssc.54994 /len=833"	-	-	-	-
gnl|UG|Ssc#S58313059	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa nucleus accumbens associated 1, BEN and BTB (POZ) domain containing (NACC1), mRNA /cds=p(1,1605) /gb=XM_003123340 /gi=311248941 /ug=Ssc.94822 /len=1605"	GO:0044451//nucleoplasm part	GO:0016564//transcription repressor activity	"GO:0012502//induction of programmed cell death;GO:0051259//protein oligomerization;GO:0006351//transcription, DNA-dependent;GO:0008283//cell proliferation"	gi|311248942|ref|XP_003123388.1|/0/PREDICTED: nucleus accumbens-associated protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58313285	110	31.67	24	6.86	88	26.45	"PREDICTED: Sus scrofa tubulin beta-4 chain-like (LOC100518415), mRNA /cds=p(1,1650) /gb=XM_003123117 /gi=311248483 /ug=Ssc.55904 /len=2200"	GO:0015630//microtubule cytoskeleton;GO:0044297//cell body;GO:0043234//protein complex;GO:0033267//axon part;GO:0044444//cytoplasmic part	GO:0032561;GO:0042287//MHC protein binding;GO:0017111//nucleoside-triphosphatase activity	GO:0007017//microtubule-based process;GO:0006458//'de novo' protein folding;GO:0009207;GO:0022402//cell cycle process;GO:0043623//cellular protein complex assembly;GO:0001909//leukocyte mediated cytotoxicity	gi|311248484|ref|XP_003123165.1|/0/PREDICTED: tubulin beta-4 chain-like [Sus scrofa]
gnl|UG|Ssc#S55326940	16	4.61	18	5.15	4	1.2	"Sus scrofa mRNA, clone:OVR010078G12, expressed in ovary /gb=AK347711 /gi=288777886 /ug=Ssc.1710 /len=1589"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0005515//protein binding	-	gi|311245972|ref|XP_003122029.1|/7.38066e-145/PREDICTED: stomatin-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S55242583	97	27.93	38	10.86	78	23.44	"FS666730 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10035D04 5', mRNA sequence /clone=HTMT10035D04 /clone_end=5' /gb=FS666730 /gi=288236232 /ug=Ssc.3211 /len=655"	-	-	-	-
gnl|UG|Ssc#S23213027	16	4.61	75	21.44	18	5.41	"Sus scrofa clone Clu_5184.scr.msk.p1.Contig1, mRNA sequence /gb=AY609981 /gi=52351551 /ug=Ssc.21205 /len=1060"	GO:0000313;GO:0005635//nuclear envelope	GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|296482575|gb|DAA24690.1|/1.45395e-145/39S ribosomal protein L19, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S39803497	52	14.97	25	7.15	35	10.52	"rcbe28_o6.y1 cbe Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV898775 /gi=178512381 /ug=Ssc.90313 /len=437"	-	-	-	-
gnl|UG|Ssc#S46878300	2	0.58	4	1.14	4	1.2	"PREDICTED: Sus scrofa abhydrolase domain containing 2 (ABHD2), mRNA /cds=p(228,1505) /gb=XM_001925989 /gi=311260707 /ug=Ssc.21617 /len=1882"	GO:0031224//intrinsic to membrane	"GO:0016788//hydrolase activity, acting on ester bonds"	GO:0016477//cell migration;GO:0006950//response to stress	gi|194039634|ref|XP_001926024.1|/0/PREDICTED: abhydrolase domain-containing protein 2 [Sus scrofa]
gnl|UG|Ssc#S35164289	3	0.86	0	0	2	0.6	"Sus scrofa mRNA, clone:MLN010103C02, expressed in mesenteric lymph node /gb=AK234050 /gi=115555437 /ug=Ssc.6712 /len=2832"	GO:0031981//nuclear lumen;GO:0044427	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0031490//chromatin DNA binding	"GO:0007549//dosage compensation;GO:0007063//regulation of sister chromatid cohesion;GO:0065009;GO:0006355//regulation of transcription, DNA-dependent;GO:0016571//histone methylation;GO:0006305;GO:0034728;GO:0016573//histone acetylation"	gi|301766124|ref|XP_002918465.1|/0/PREDICTED: transcriptional repressor CTCF-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S18354739	17	4.89	45	12.86	19	5.71	"893805 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK450180 /gi=40797394 /ug=Ssc.55838 /len=894"	GO:0031224//intrinsic to membrane	GO:0005488//binding	-	gi|57048066|ref|XP_536252.1|/1.88151e-52/PREDICTED: similar to C34C12.4 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58308609	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa poly(ADP-ribose) glycohydrolase ARH3-like (LOC100525405), mRNA /cds=p(24,1124) /gb=XM_003127788 /gi=311258898 /ug=Ssc.4031 /len=1664"	GO:0031981//nuclear lumen	"GO:0004553//hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0043169//cation binding"	-	gi|311258899|ref|XP_003127836.1|/1.32627e-176/PREDICTED: poly(ADP-ribose) glycohydrolase ARH3-like [Sus scrofa]
gnl|UG|Ssc#S6043329	0	0	0	0	0	0	"375881 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BI346614 /gi=15039912 /ti=470952382 /ug=Ssc.80945 /len=577"	-	GO:0046914//transition metal ion binding	GO:0043967//histone H4 acetylation	gi|281348690|gb|EFB24274.1|/4.10684e-102/hypothetical protein PANDA_000754 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58312130	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100513142 (LOC100513142), mRNA /cds=p(1,5271) /gb=XM_003124279 /gi=311250840 /ug=Ssc.27938 /len=5578"	GO:0031981//nuclear lumen	-	GO:0006259//DNA metabolic process	gi|311250841|ref|XP_003124327.1|/0/PREDICTED: hypothetical protein LOC100513142 [Sus scrofa]
gnl|UG|Ssc#S35166079	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:UTR010003C01, expressed in uterus /gb=AK239846 /gi=115553659 /ug=Ssc.53780 /len=1063"	GO:0015934//large ribosomal subunit	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|74212223|dbj|BAE40270.1|/1.07827e-140/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S35168025	4	1.15	3	0.86	3	0.9	"Sus scrofa mRNA, clone:THY010066B01, expressed in thymus /gb=AK239129 /gi=115551665 /ug=Ssc.3208 /len=2417"	-	-	-	-
gnl|UG|Ssc#S58311491	89	25.62	33	9.43	91	27.35	"PREDICTED: Sus scrofa protein unc-50 homolog, transcript variant 1 (LOC100524249), mRNA /cds=p(147,926) /gb=XM_003124908 /gi=311252155 /ug=Ssc.1499 /len=1131"	GO:0019866//organelle inner membrane;GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0003676//nucleic acid binding	GO:0006810//transport;GO:0007165//signal transduction	gi|311252154|ref|XP_003124957.1|/2.15582e-134/PREDICTED: protein unc-50 homolog isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58303145	13	3.74	2	0.57	8	2.4	"PREDICTED: Sus scrofa activin A receptor, type IIA (ACVR2A), mRNA /cds=p(586,2127) /gb=XM_003133250 /gi=311272096 /ug=Ssc.15924 /len=3790"	-	-	-	-
gnl|UG|Ssc#S58301233	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa zinc finger MYM-type protein 3-like (LOC100522113), mRNA /cds=p(1,333) /gb=XM_003135174 /gi=311276448 /ug=Ssc.90609 /len=600"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0032501//multicellular organismal process	gi|311276449|ref|XP_003135222.1|/1.06498e-58/PREDICTED: zinc finger MYM-type protein 3-like [Sus scrofa]
gnl|UG|Ssc#S55327231	9	2.59	14	4	8	2.4	"Sus scrofa mRNA, clone:OVR010028F05, expressed in ovary /gb=AK347418 /gi=288576825 /ug=Ssc.10989 /len=2277"	-	GO:0005488//binding	-	"gi|194226216|ref|XP_001915595.1|/0/PREDICTED: similar to SON DNA binding protein, isoform f (predicted) [Equus caballus]"
gnl|UG|Ssc#S20939171	0	0	2	0.57	3	0.9	"AJ650894 CSEQRAN19 Sus scrofa cDNA clone C0003276_K07, mRNA sequence /clone=C0003276_K07 /gb=AJ650894 /gi=49327739 /ug=Ssc.85674 /len=515"	-	-	-	gi|297707116|ref|XP_002830362.1|/1.07805e-14/PREDICTED: hypothetical protein LOC100455747 [Pongo abelii]
gnl|UG|Ssc#S40157234	60	17.27	92	26.3	46	13.82	"rhyp10c_a21.y1 hyp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW252141 /gi=182509413 /ug=Ssc.63193 /len=504"	-	-	-	-
gnl|UG|Ssc#S44163569	116	33.4	83	23.73	77	23.14	"Sus scrofa guanylate binding protein 2 (GBP2) mRNA, complete cds /cds=p(273,2048) /gb=EU259888 /gi=166202347 /ug=Ssc.883 /len=2237"	GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0019221//cytokine-mediated signaling pathway;GO:0009207;GO:0002376//immune system process	gi|190360595|ref|NP_001121946.1|/0/interferon-induced guanylate-binding protein 2 [Sus scrofa]
gnl|UG|Ssc#S46880510	44	12.67	39	11.15	43	12.92	"PREDICTED: Sus scrofa hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 (HERC1), mRNA /cds=p(27,14606) /gb=XM_001927251 /gi=311244607 /ug=Ssc.6629 /len=15432"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0005083//small GTPase regulator activity;GO:0016879//ligase activity, forming carbon-nitrogen bonds"	GO:0051234//establishment of localization;GO:0043412	gi|311244608|ref|XP_001927286.2|/0/PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Sus scrofa]
gnl|UG|Ssc#S35167112	119	34.26	180	51.45	96	28.85	"Sus scrofa mRNA, clone:LVRM10035B11, expressed in liver /gb=AK232832 /gi=115552627 /ug=Ssc.43087 /len=2041"	-	-	-	gi|258676922|gb|ACV87314.1|/7.5059e-07/IL-23 [Sus scrofa]
gnl|UG|Ssc#S58314344	2	0.58	2	0.57	2	0.6	"PREDICTED: Sus scrofa ATP-binding cassette sub-family A member 1-like (LOC100519123), mRNA /cds=p(304,7089) /gb=XM_003122054 /gi=311246159 /ug=Ssc.7146 /len=7261"	GO:0030139//endocytic vesicle;GO:0005626//insoluble fraction;GO:0034358//plasma lipoprotein particle;GO:0016021//integral to membrane	GO:0032934//sterol binding;GO:0032559;GO:0015405;GO:0015075//ion transmembrane transporter activity;GO:0017111//nucleoside-triphosphatase activity;GO:0019905//syntaxin binding;GO:0015248//sterol transporter activity;GO:0051020//GTPase binding;GO:0030226	GO:0007033//vacuole organization;GO:0033363//secretory granule organization;GO:0015914//phospholipid transport;GO:0006811//ion transport;GO:0055092//sterol homeostasis;GO:0009207;GO:0016125//sterol metabolic process;GO:0006464//protein modification process;GO:0010742//macrophage derived foam cell differentiation;GO:0055094//response to lipoprotein stimulus;GO:0034377;GO:0010878//cholesterol storage;GO:0034645//cellular macromolecule biosynthetic process;GO:0050701//interleukin-1 secretion;GO:0007166//cell surface receptor linked signaling pathway;GO:0010874//regulation of cholesterol efflux;GO:0007266//Rho protein signal transduction;GO:0006171//cAMP biosynthetic process;GO:0032526//response to retinoic acid;GO:0032496//response to lipopolysaccharide;GO:0006909//phagocytosis	gi|311246160|ref|XP_003122102.1|/0/PREDICTED: ATP-binding cassette sub-family A member 1-like [Sus scrofa]
gnl|UG|Ssc#S35164863	11	3.17	5	1.43	9	2.7	"Sus scrofa mRNA, clone:LVRM10203D05, expressed in liver /gb=AK233675 /gi=115554863 /ug=Ssc.2330 /len=2036"	GO:0031224//intrinsic to membrane;GO:0005886//plasma membrane	GO:0005488//binding;GO:0015081//sodium ion transmembrane transporter activity;GO:0015171//amino acid transmembrane transporter activity	GO:0015801//aromatic amino acid transport;GO:0015820//leucine transport;GO:0040007//growth;GO:0002376//immune system process;GO:0006807//nitrogen compound metabolic process;GO:0007599//hemostasis;GO:0070838//divalent metal ion transport	gi|171465894|gb|ACB46190.1|/0/solute carrier family 3 member 2 [Sus scrofa]
gnl|UG|Ssc#S19545826	3	0.86	6	1.72	4	1.2	"951259 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN161922 /gi=46176352 /ug=Ssc.27243 /len=890"	GO:0043231//intracellular membrane-bounded organelle;GO:0000785//chromatin	GO:0016790//thiolester hydrolase activity;GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0019783//small conjugating protein-specific protease activity	GO:0010608//posttranscriptional regulation of gene expression;GO:0006259//DNA metabolic process;GO:0007049//cell cycle;GO:0033554//cellular response to stress;GO:0019941//modification-dependent protein catabolic process;GO:0016570//histone modification	gi|156120893|ref|NP_001095593.1|/1.32188e-98/ubiquitin thiolesterase 3 [Bos taurus]
gnl|UG|Ssc#S21552466	2	0.58	0	0	0	0	"UMC-p4mm3-007-d06 4mm ovarian follicle p4mm Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO944642 /gi=51311401 /ug=Ssc.40505 /len=311"	-	-	-	-
gnl|UG|Ssc#S46879992	5	1.44	11	3.14	8	2.4	"PREDICTED: Sus scrofa GATA zinc finger domain containing 2B (GATAD2B), mRNA /cds=p(1,1782) /gb=XM_001929518 /gi=194036129 /ug=Ssc.42344 /len=1941"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0003677//DNA binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|194036130|ref|XP_001929553.1|/0/PREDICTED: transcriptional repressor p66-beta [Sus scrofa]
gnl|UG|Ssc#S35171606	3	0.86	2	0.57	0	0	"Sus scrofa mRNA, clone:ITT010064E03, expressed in intestine /gb=AK231443 /gi=115548229 /ug=Ssc.79866 /len=1956"	-	-	-	"gi|296486864|gb|DAA28977.1|/0/TBC1 domain family, member 22A [Bos taurus]"
gnl|UG|Ssc#S40476689	5	1.44	2	0.57	0	0	"rspc020_m18.y1 spc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW571295 /gi=183062455 /ug=Ssc.63835 /len=754"	-	-	-	-
gnl|UG|Ssc#S34500710	4	1.15	0	0	0	0	"DB813209 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10080B05 /clone_end=3' /gb=DB813209 /gi=112774768 /ug=Ssc.89656 /len=843"	GO:0030424//axon;GO:0043231//intracellular membrane-bounded organelle;GO:0000267//cell fraction;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0043025//neuronal cell body;GO:0015630//microtubule cytoskeleton;GO:0016020//membrane	GO:0031267//small GTPase binding;GO:0004712//protein serine/threonine/tyrosine kinase activity;GO:0032559;GO:0019901//protein kinase binding;GO:0004725//protein tyrosine phosphatase activity	GO:0048858//cell projection morphogenesis;GO:0006470//protein dephosphorylation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0032318//regulation of Ras GTPase activity;GO:0006940//regulation of smooth muscle contraction;GO:0031960//response to corticosteroid stimulus;GO:0007569//cell aging;GO:0016477//cell migration;GO:0032401//establishment of melanosome localization;GO:0000087//M phase of mitotic cell cycle;GO:0006935//chemotaxis;GO:0045595//regulation of cell differentiation;GO:0006368//transcription elongation from RNA polymerase II promoter;GO:0008283//cell proliferation;GO:0002224//toll-like receptor signaling pathway;GO:0051259//protein oligomerization;GO:0007030//Golgi organization;GO:0000165//MAPKKK cascade;GO:0009913//epidermal cell differentiation;GO:0001568//blood vessel development;GO:0022408//negative regulation of cell-cell adhesion;GO:0009611//response to wounding	"gi|119598173|gb|EAW77767.1|/4.1304e-62/mitogen-activated protein kinase kinase 1, isoform CRA_c [Homo sapiens]"
gnl|UG|Ssc#S16513984	5	1.44	4	1.14	0	0	"805944 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF177468 /gi=33289244 /ug=Ssc.4849 /len=727"	-	-	-	-
gnl|UG|Ssc#S35169559	3	0.86	0	0	6	1.8	"Sus scrofa mRNA, clone:OVRM10113A04, expressed in ovary /gb=AK235759 /gi=115550280 /ug=Ssc.1493 /len=1540"	GO:0043234//protein complex;GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation	gi|311249615|ref|XP_003123704.1|/2.4852e-156/PREDICTED: tetraspanin-17-like [Sus scrofa]
gnl|UG|Ssc#S58305677	493	141.94	329	94.04	1138	342	"PREDICTED: Sus scrofa vimentin-like (LOC100522394), mRNA /cds=p(1,2484) /gb=XM_003130721 /gi=311265675 /ug=Ssc.42613 /len=2820"	GO:0043005//neuron projection;GO:0034399//nuclear periphery;GO:0044444//cytoplasmic part;GO:0005882//intermediate filament;GO:0016020//membrane	GO:0019900//kinase binding;GO:0005198//structural molecule activity	GO:0006915//apoptosis;GO:0051704;GO:0021782//glial cell development;GO:0045104//intermediate filament cytoskeleton organization;GO:0048708//astrocyte differentiation;GO:0010975//regulation of neuron projection development;GO:0006936//muscle contraction	gi|311265676|ref|XP_003130769.1|/0/PREDICTED: vimentin-like [Sus scrofa]
gnl|UG|Ssc#S58301645	100	28.79	107	30.59	74	22.24	"PREDICTED: Sus scrofa n-alpha-acetyltransferase 38, NatC auxiliary subunit-like (LOC100514693), mRNA /cds=p(141,431) /gb=XM_003134751 /gi=311275557 /ug=Ssc.49472 /len=1632"	GO:0043231//intracellular membrane-bounded organelle;GO:0032991//macromolecular complex	GO:0017069//snRNA binding	GO:0000377	gi|109139334|gb|ABE96774.2|/2.36048e-53/U6 snRNA-associated Sm-like protein LSm8 [Bos taurus]
gnl|UG|Ssc#S35173206	12	3.45	3	0.86	0	0	"Sus scrofa mRNA, clone:OVR010067F11, expressed in ovary /gb=AK234467 /gi=115546629 /ug=Ssc.2142 /len=1448"	GO:0043005//neuron projection;GO:0015629//actin cytoskeleton	GO:0008092//cytoskeletal protein binding	GO:0048167//regulation of synaptic plasticity;GO:0030036//actin cytoskeleton organization;GO:0010975//regulation of neuron projection development	"gi|148709254|gb|EDL41200.1|/2.43177e-107/drebrin 1, isoform CRA_c [Mus musculus]"
gnl|UG|Ssc#S23756978	26	7.49	19	5.43	9	2.7	"1113977 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN114597 /gi=59808573 /ug=Ssc.38331 /len=885"	-	-	-	-
gnl|UG|Ssc#S6091656	0	0	0	0	2	0.6	"Sus scrofa dihydropyrimidine dehydrogenase mRNA, complete cds /cds=p(82,3159) /gb=U09179 /gi=558306 /ug=Ssc.153 /len=4441"	GO:0044444//cytoplasmic part;GO:0000267//cell fraction	"GO:0043169//cation binding;GO:0051536//iron-sulfur cluster binding;GO:0016628//oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;GO:0004152//dihydroorotate dehydrogenase activity;GO:0042802//identical protein binding;GO:0002061;GO:0000166//nucleotide binding;GO:0050662//coenzyme binding"	GO:0006144//purine base metabolic process;GO:0019856//pyrimidine base biosynthetic process;GO:0031667//response to nutrient levels;GO:0009174;GO:0048511//rhythmic process;GO:0042221//response to chemical stimulus;GO:0046104//thymidine metabolic process;GO:0006208//pyrimidine base catabolic process	gi|47522904|ref|NP_999209.1|/0/dihydropyrimidine dehydrogenase [NADP+] precursor [Sus scrofa]
gnl|UG|Ssc#S35172497	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:OVRM10010B01, expressed in ovary /gb=AK234711 /gi=115547338 /ug=Ssc.3115 /len=2153"	-	-	-	-
gnl|UG|Ssc#S55324672	0	0	2	0.57	2	0.6	"Sus scrofa mRNA, clone:ADR010054F03, expressed in adrenal gland /gb=AK343384 /gi=288780200 /ug=Ssc.11693 /len=1227"	GO:0043231//intracellular membrane-bounded organelle;GO:0012505//endomembrane system;GO:0044444//cytoplasmic part	"GO:0030674//protein binding, bridging;GO:0032947//protein complex scaffold"	GO:0006412//translation;GO:0030041//actin filament polymerization;GO:0006796//phosphate metabolic process;GO:0048870//cell motility;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0030031//cell projection assembly;GO:0010469//regulation of receptor activity;GO:0006935//chemotaxis;GO:0042098//T cell proliferation	gi|297266700|ref|XP_001109452.2|/3.48747e-24/PREDICTED: cytoplasmic protein NCK2 isoform 1 [Macaca mulatta]
gnl|UG|Ssc#S46877531	0	0	7	2	0	0	"PREDICTED: Sus scrofa glycosyltransferase 8 domain containing 1 (GLT8D1), mRNA /cds=p(403,1635) /gb=XM_001925457 /gi=311269008 /ug=Ssc.57159 /len=1946"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0016740//transferase activity	-	gi|311269009|ref|XP_001925492.2|/0/PREDICTED: glycosyltransferase 8 domain-containing protein 1 [Sus scrofa]
gnl|UG|Ssc#S58312032	95	27.35	64	18.29	126	37.87	"PREDICTED: Sus scrofa guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2-like, transcript variant 2 (LOC100516546), mRNA /cds=p(265,1287) /gb=XM_003124369 /gi=311251040 /ug=Ssc.4920 /len=1655"	GO:0032991//macromolecular complex;GO:0031234//extrinsic to internal side of plasma membrane;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0005488//binding;GO:0060089;GO:0016247//channel regulator activity	GO:0007606//sensory perception of chemical stimulus;GO:0007267//cell-cell signaling;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0033762//response to glucagon stimulus;GO:0009207;GO:0015980//energy derivation by oxidation of organic compounds	gi|13937391|ref|NP_034442.1|/0/guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Mus musculus]
gnl|UG|Ssc#S58311386	2	0.58	3	0.86	0	0	"PREDICTED: Sus scrofa mps one binder kinase activator-like 1B-like (LOC100520128), mRNA /cds=p(1,480) /gb=XM_003125025 /gi=311252368 /ug=Ssc.56624 /len=4004"	-	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0043169//cation binding"	GO:0006796//phosphate metabolic process;GO:0035556//intracellular signal transduction	gi|311252369|ref|XP_003125073.1|/1.28665e-88/PREDICTED: mps one binder kinase activator-like 1B-like [Sus scrofa]
gnl|UG|Ssc#S58309473	2	0.58	0	0	5	1.5	"PREDICTED: Sus scrofa enhancer of mRNA decapping 4 (EDC4), mRNA /cds=p(1,4554) /gb=XM_003126926 /gi=311257137 /ug=Ssc.20934 /len=4554"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0005488//binding	"GO:0000291//nuclear-transcribed mRNA catabolic process, exonucleolytic"	gi|311257138|ref|XP_003126974.1|/0/PREDICTED: enhancer of mRNA-decapping protein 4-like [Sus scrofa]
gnl|UG|Ssc#S58307667	12	3.45	33	9.43	5	1.5	"PREDICTED: Sus scrofa ankyrin repeat domain-containing protein 9-like (LOC100157410), mRNA /cds=p(454,1416) /gb=XM_003128735 /gi=311261592 /ug=Ssc.33851 /len=1510"	-	-	-	gi|194038113|ref|XP_001927942.1|/3.91513e-140/PREDICTED: ankyrin repeat domain-containing protein 9-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S18273285	10	2.88	6	1.72	4	1.2	"BP169776 full-length enriched swine cDNA library, adult uterus Sus scrofa cDNA clone UTR010026A10 5', mRNA sequence /clone=UTR010026A10 /clone_end=5' /gb=BP169776 /gi=40419249 /ug=Ssc.82268 /len=753"	-	-	-	-
gnl|UG|Ssc#S50084284	0	0	2	0.57	2	0.6	"Sus scrofa type I inositol-3,4-bisphosphate 4-phosphatase (INPP4A) mRNA, complete cds /cds=p(1,2802) /gb=EU753242 /gi=206584545 /ug=Ssc.63626 /len=2802"	-	GO:0034593	GO:0023052//signaling	"gi|221139742|ref|NP_001137402.1|/0/type I inositol-3,4-bisphosphate 4-phosphatase [Sus scrofa]"
gnl|UG|Ssc#S55326207	0	0	4	1.14	2	0.6	"Sus scrofa mRNA, clone:OVRM10165H11, expressed in ovary /gb=AK348444 /gi=288778619 /ug=Ssc.17346 /len=3207"	-	-	-	"gi|194042025|ref|XP_001927910.1|/0/PREDICTED: glycerol-3-phosphate acyltransferase 1, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S35164291	16	4.61	14	4	10	3.01	"Sus scrofa mRNA, clone:MLN010103B09, expressed in mesenteric lymph node /gb=AK234048 /gi=115555435 /ug=Ssc.3130 /len=962"	-	-	-	-
gnl|UG|Ssc#S58308110	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa serine/threonine-protein phosphatase 1 regulatory subunit 10-like (LOC100153314), mRNA /cds=p(557,3334) /gb=XM_003128288 /gi=311260074 /ug=Ssc.21440 /len=4433"	GO:0043231//intracellular membrane-bounded organelle;GO:0008287//protein serine/threonine phosphatase complex;GO:0000785//chromatin	GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0019903//protein phosphatase binding;GO:0019212//phosphatase inhibitor activity	GO:0019222//regulation of metabolic process;GO:0006605//protein targeting	gi|178056844|ref|NP_001116637.1|/0/serine/threonine-protein phosphatase 1 regulatory subunit 10 [Sus scrofa]
gnl|UG|Ssc#S58305596	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100512554 (LOC100512554), mRNA /cds=p(1,594) /gb=XM_003130811 /gi=311265841 /ug=Ssc.9005 /len=925"	GO:0000151//ubiquitin ligase complex	GO:0019899//enzyme binding	GO:0006917//induction of apoptosis;GO:0051704;GO:0019941//modification-dependent protein catabolic process;GO:0008283//cell proliferation;GO:0022402//cell cycle process	gi|311265842|ref|XP_003130859.1|/5.72334e-84/PREDICTED: hypothetical protein LOC100512554 [Sus scrofa]
gnl|UG|Ssc#S58308891	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase MIB2-like (LOC100511385), mRNA /cds=p(1,3225) /gb=XM_003127509 /gi=311258318 /ug=Ssc.10212 /len=3342"	GO:0043234//protein complex;GO:0005768//endosome	GO:0008092//cytoskeletal protein binding;GO:0046914//transition metal ion binding;GO:0060089;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation;GO:0007249//I-kappaB kinase/NF-kappaB cascade	gi|311258319|ref|XP_003127557.1|/0/PREDICTED: e3 ubiquitin-protein ligase MIB2-like [Sus scrofa]
gnl|UG|Ssc#S17515106	170	48.94	222	63.46	181	54.4	"BX669675 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0028.b.13 5prim, mRNA sequence /clone=scac0028.b.13 /clone_end=5' /gb=BX669675 /gi=90234897 /ug=Ssc.53695 /len=721"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|149731271|ref|XP_001502178.1|/1.66452e-76/PREDICTED: similar to Growth and transformation-dependent protein [Equus caballus]
gnl|UG|Ssc#S58308042	3	0.86	4	1.14	2	0.6	"PREDICTED: Sus scrofa UHRF1 binding protein 1 (UHRF1BP1), mRNA /cds=p(1,4302) /gb=XM_003128358 /gi=311260272 /ug=Ssc.45971 /len=4302"	-	-	-	gi|311260273|ref|XP_003128406.1|/0/PREDICTED: UHRF1-binding protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58305925	0	0	0	0	0	0	"PREDICTED: Sus scrofa conserved oligomeric Golgi complex subunit 7-like (LOC100524823), mRNA /cds=p(199,1161) /gb=XM_003130473 /gi=311265165 /ug=Ssc.45615 /len=1161"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0012505//endomembrane system	GO:0005488//binding	GO:0033365//protein localization to organelle;GO:0031647//regulation of protein stability;GO:0048193//Golgi vesicle transport;GO:0015031//protein transport;GO:0006464//protein modification process	gi|311265166|ref|XP_003130521.1|/9.65845e-178/PREDICTED: conserved oligomeric Golgi complex subunit 7-like [Sus scrofa]
gnl|UG|Ssc#S58312642	141	40.59	184	52.6	164	49.29	"PREDICTED: Sus scrofa single-stranded DNA-binding protein 4-like (LOC100515711), mRNA /cds=p(1,966) /gb=XM_003123765 /gi=311249790 /ug=Ssc.9398 /len=1963"	GO:0043231//intracellular membrane-bounded organelle	GO:0043566//structure-specific DNA binding	-	gi|311249791|ref|XP_003123813.1|/3.43213e-126/PREDICTED: single-stranded DNA-binding protein 4-like [Sus scrofa]
gnl|UG|Ssc#S58305302	0	0	0	0	0	0	"PREDICTED: Sus scrofa inhibitor of growth protein 1-like (LOC100516151), mRNA /cds=p(80,916) /gb=XM_003131095 /gi=311266564 /ug=Ssc.28310 /len=2562"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding	"GO:0016049//cell growth;GO:0008219//cell death;GO:0006355//regulation of transcription, DNA-dependent;GO:0006605//protein targeting;GO:0008283//cell proliferation"	gi|311266565|ref|XP_003131143.1|/2.8454e-131/PREDICTED: LOW QUALITY PROTEIN: inhibitor of growth protein 1-like [Sus scrofa]
gnl|UG|Ssc#S23213235	507	145.97	312	89.18	455	136.74	"Sus scrofa clone Clu_30530.scr.msk.p1.Contig1, mRNA sequence /gb=AY609773 /gi=52351341 /ug=Ssc.3629 /len=1691"	GO:0044424//intracellular part	GO:0032182//small conjugating protein binding;GO:0019783//small conjugating protein-specific protease activity;GO:0008238//exopeptidase activity	GO:0016579//protein deubiquitination	gi|194390062|dbj|BAG60547.1|/1.55121e-148/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S29981199	16	4.61	14	4	2	0.6	"PDUts1170B08 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1170B08 5' similar to homologue to ref|NM_018569.2| Homo sapiens hypothetical protein PRO0971 (PRO0971), mRNA, mRNA sequence /clone=PDUts1170B08 /clone_end=5' /gb=CV877857 /gi=84131817 /ug=Ssc.88654 /len=363"	-	-	-	-
gnl|UG|Ssc#S23213181	9	2.59	3	0.86	2	0.6	"Sus scrofa clone Clu_33131.scr.msk.p1.Contig1, mRNA sequence /gb=AY609827 /gi=52351397 /ug=Ssc.4925 /len=1611"	-	GO:0005488//binding;GO:0030234//enzyme regulator activity	GO:0016567//protein ubiquitination;GO:0031331	gi|114051037|ref|NP_001039596.1|/3.37957e-137/hsp70-binding protein 1 [Bos taurus]
gnl|UG|Ssc#S40407916	29	8.35	27	7.72	20	6.01	"rplac_2506.y1 pla Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW502523 /gi=182754615 /ug=Ssc.85033 /len=461"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	"GO:0003002//regionalization;GO:0006355//regulation of transcription, DNA-dependent;GO:0001501//skeletal system development;GO:0048562//embryonic organ morphogenesis"	gi|296211862|ref|XP_002752511.1|/1.62554e-81/PREDICTED: hypothetical protein LOC100413939 [Callithrix jacchus]
gnl|UG|Ssc#S43509650	12	3.45	5	1.43	17	5.11	"Sus scrofa caveolin 2 (CAV2), mRNA /cds=p(481,969) /gb=NM_001123091 /gi=178056859 /ug=Ssc.1291 /len=3073"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0012505//endomembrane system;GO:0009898//internal side of plasma membrane	GO:0042802//identical protein binding;GO:0050780//dopamine receptor binding	GO:0006461//protein complex assembly;GO:0001935//endothelial cell proliferation;GO:0001765;GO:0048747//muscle fiber development;GO:0045745//positive regulation of G-protein coupled receptor protein signaling pathway;GO:0022406;GO:0016192//vesicle-mediated transport;GO:0007067//mitosis	gi|178056860|ref|NP_001116563.1|/2.14244e-88/caveolin-2 [Sus scrofa]
gnl|UG|Ssc#S35173915	0	0	2	0.57	4	1.2	"Sus scrofa mRNA, clone:SPL010028C07, expressed in spleen /gb=AK237361 /gi=115545920 /ug=Ssc.54301 /len=2004"	GO:0005626//insoluble fraction;GO:0005764//lysosome;GO:0016020//membrane	GO:0005515//protein binding;GO:0032559	GO:0043068//positive regulation of programmed cell death;GO:0010975//regulation of neuron projection development	gi|178056506|ref|NP_001116603.1|/1.48848e-100/integral membrane protein 2C [Sus scrofa]
gnl|UG|Ssc#S35164195	49	14.11	39	11.15	41	12.32	"Sus scrofa mRNA, clone:SPL010006B07, expressed in spleen /gb=AK237163 /gi=115555531 /ug=Ssc.16953 /len=1132"	-	-	-	-
gnl|UG|Ssc#S20459282	2823	812.76	2695	770.36	3259	979.42	"Sus scrofa melanoma antigen family D1 mRNA, complete cds /cds=p(162,2516) /gb=AY626238 /gi=48527177 /ug=Ssc.22086 /len=2751"	GO:0032991//macromolecular complex;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0016909//SAP kinase activity;GO:0003712//transcription cofactor activity	GO:0032583//regulation of gene-specific transcription;GO:0008285//negative regulation of cell proliferation;GO:0001658//branching involved in ureteric bud morphogenesis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006917//induction of apoptosis;GO:0043405//regulation of MAP kinase activity	gi|49274615|ref|NP_001001860.1|/0/melanoma-associated antigen D1 [Sus scrofa]
gnl|UG|Ssc#S23213303	9	2.59	6	1.72	8	2.4	"Sus scrofa clone Clu_26808.scr.msk.p1.Contig1, mRNA sequence /gb=AY609705 /gi=52351273 /ug=Ssc.5164 /len=1351"	GO:0043231//intracellular membrane-bounded organelle;GO:0000785//chromatin	GO:0005488//binding	GO:0009416//response to light stimulus;GO:0033260//DNA replication involved in S phase;GO:0000077//DNA damage checkpoint;GO:0007165//signal transduction;GO:0008283//cell proliferation	gi|194034654|ref|XP_001925266.1|/1.46667e-127/PREDICTED: TIMELESS-interacting protein [Sus scrofa]
gnl|UG|Ssc#S58308471	3	0.86	2	0.57	0	0	"PREDICTED: Sus scrofa ankyrin repeat domain 13C (ANKRD13C), mRNA /cds=p(315,1955) /gb=XM_003127927 /gi=311259182 /ug=Ssc.14212 /len=4046"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0031090//organelle membrane	GO:0005515//protein binding	GO:0035437//maintenance of protein localization in endoplasmic reticulum;GO:0042981//regulation of apoptosis;GO:0010556;GO:0009895	gi|311259183|ref|XP_003127975.1|/0/PREDICTED: ankyrin repeat domain-containing protein 13C-like [Sus scrofa]
gnl|UG|Ssc#S35164976	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10173C08, expressed in liver /gb=AK233563 /gi=115554750 /ug=Ssc.11767 /len=2164"	-	GO:0016741	GO:0006730//one-carbon metabolic process	gi|311268552|ref|XP_003132108.1|/4.1112e-128/PREDICTED: methyltransferase-like protein 6-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58310681	5	1.44	2	0.57	0	0	"PREDICTED: Sus scrofa tripartite motif-containing protein 46-like (LOC100155505), mRNA /cds=p(61,2340) /gb=XM_003125718 /gi=311254178 /ug=Ssc.47954 /len=3073"	GO:0044464//cell part	GO:0046914//transition metal ion binding	-	gi|73961605|ref|XP_547551.2|/0/PREDICTED: similar to tripartite motif-containing 46 [Canis familiaris]
gnl|UG|Ssc#S58307081	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa PDZ and LIM domain 5, transcript variant 1 (PDLIM5), mRNA /cds=p(50,1840) /gb=XM_003129316 /gi=311262804 /ug=Ssc.13950 /len=3455"	GO:0044459//plasma membrane part;GO:0005624//membrane fraction;GO:0031674//I band;GO:0044430//cytoskeletal part	GO:0008092//cytoskeletal protein binding;GO:0046914//transition metal ion binding;GO:0019901//protein kinase binding	GO:0048814//regulation of dendrite morphogenesis;GO:0044087	gi|311262805|ref|XP_003129364.1|/0/PREDICTED: PDZ and LIM domain protein 5-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46880457	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa SEC63 homolog (S. cerevisiae) (SEC63), mRNA /cds=p(184,2466) /gb=XM_001925479 /gi=311244264 /ug=Ssc.40368 /len=3404"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity;GO:0005515//protein binding	GO:0044267//cellular protein metabolic process;GO:0006605//protein targeting	gi|73973969|ref|XP_532252.2|/0/PREDICTED: similar to Translocation protein SEC63 homolog [Canis familiaris]
gnl|UG|Ssc#S58302313	6	1.73	0	0	8	2.4	"PREDICTED: Sus scrofa nudC domain-containing protein 2-like, transcript variant 1 (LOC100515244), mRNA /cds=p(344,817) /gb=XM_003134083 /gi=311273980 /ug=Ssc.26770 /len=1249"	GO:0044464//cell part	-	-	gi|73954084|ref|XP_536440.2|/9.5707e-94/PREDICTED: similar to NudC domain containing protein 2 [Canis familiaris]
gnl|UG|Ssc#S31105128	2	0.58	2	0.57	6	1.8	"1512640 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY408966 /gi=87210269 /ug=Ssc.47306 /len=714"	-	-	-	-
gnl|UG|Ssc#S35171639	96	27.64	89	25.44	80	24.04	"Sus scrofa mRNA, clone:ITT010083D03, expressed in intestine /gb=AK231506 /gi=115548196 /ug=Ssc.55400 /len=1084"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0031090//organelle membrane	-	"GO:0016192//vesicle-mediated transport;GO:0006351//transcription, DNA-dependent"	"gi|73965636|ref|XP_849270.1|/1.29286e-96/PREDICTED: similar to Serine/threonine-protein kinase WNK4 (Protein kinase with no lysine 4) (Protein kinase, lysine-deficient 4) (Liver regeneration-related protein LRRG120) [Canis familiaris]"
gnl|UG|Ssc#S58302504	74	21.3	54	15.44	75	22.54	"PREDICTED: Sus scrofa nipped-B-like protein-like (LOC100516522), mRNA /cds=p(505,8919) /gb=XM_003133891 /gi=311273589 /ug=Ssc.16962 /len=9864"	-	-	-	-
gnl|UG|Ssc#S58315105	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa ubiquitin-conjugating enzyme E2 J1-like (LOC100522843), mRNA /cds=p(84,1025) /gb=XM_003121298 /gi=311244180 /ug=Ssc.83455 /len=3532"	-	-	-	-
gnl|UG|Ssc#S46877032	33	9.5	4	1.14	35	10.52	"PREDICTED: Sus scrofa glutamate dehydrogenase 1 (GLUD1), mRNA /cds=p(282,1958) /gb=XM_001925053 /gi=311271479 /ug=Ssc.71999 /len=3195"	GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part	"GO:0032561;GO:0005515//protein binding;GO:0051287//NAD binding;GO:0016597//amino acid binding;GO:0032559;GO:0016639//oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor"	GO:0007613//memory;GO:0050796//regulation of insulin secretion;GO:0006536//glutamate metabolic process	"gi|311271480|ref|XP_001925088.2|/0/PREDICTED: glutamate dehydrogenase 1, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S40390344	9	2.59	6	1.72	5	1.5	"rova024_d13.y1 ova Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW484951 /gi=182860876 /ug=Ssc.44182 /len=630"	-	-	-	-
gnl|UG|Ssc#S35170354	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10088H07, expressed in ovary /gb=AK235507 /gi=115549485 /ug=Ssc.2866 /len=1427"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0004175//endopeptidase activity	GO:0019538//protein metabolic process	"gi|301759795|ref|XP_002915746.1|/0/PREDICTED: presenilins-associated rhomboid-like protein, mitochondrial-like isoform 1 [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S46879355	0	0	2	0.57	3	0.9	"PREDICTED: Sus scrofa olfactory receptor 6C2-like (LOC100152702), mRNA /cds=p(1,1368) /gb=XM_001926452 /gi=194037447 /ug=Ssc.95763 /len=1368"	-	GO:0004888//transmembrane receptor activity	GO:0023052//signaling	gi|194037448|ref|XP_001926487.1|/0/PREDICTED: olfactory receptor 6C2-like [Sus scrofa]
gnl|UG|Ssc#S58308452	10	2.88	0	0	7	2.1	"PREDICTED: Sus scrofa EF-hand calcium binding domain 7 (EFCAB7), mRNA /cds=p(73,1785) /gb=XM_003127951 /gi=311259220 /ug=Ssc.7581 /len=1785"	-	GO:0046872//metal ion binding	-	gi|311259221|ref|XP_003127999.1|/0/PREDICTED: EF-hand calcium-binding domain-containing protein 7-like [Sus scrofa]
gnl|UG|Ssc#S31111189	125	35.99	38	10.86	145	43.58	"1527047 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY415027 /gi=87216330 /ug=Ssc.59703 /len=262"	GO:0015935//small ribosomal subunit	GO:0046914//transition metal ion binding;GO:0005198//structural molecule activity;GO:0003824//catalytic activity	GO:0006412//translation;GO:0019080;GO:0007049//cell cycle;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0031016//pancreas development;GO:0048863//stem cell differentiation	gi|296214930|ref|XP_002753918.1|/1.45893e-34/PREDICTED: 40S ribosomal protein S29-like [Callithrix jacchus]
gnl|UG|Ssc#S58304652	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa suppressor of zeste 12 homolog (Drosophila) (SUZ12), mRNA /cds=p(232,2445) /gb=XM_003131745 /gi=311267902 /ug=Ssc.38484 /len=4865"	GO:0031519//PcG protein complex;GO:0000803	GO:0046914//transition metal ion binding;GO:0042393//histone binding;GO:0008276//protein methyltransferase activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0008283//cell proliferation;GO:0016567//protein ubiquitination;GO:0045595//regulation of cell differentiation;GO:0006479//protein methylation;GO:0006325//chromatin organization	gi|197304648|dbj|BAA09931.2|/0/KIAA0160 [Homo sapiens]
gnl|UG|Ssc#S16763559	0	0	0	0	4	1.2	"827468 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF361154 /gi=34159563 /ug=Ssc.70608 /len=648"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0044459//plasma membrane part;GO:0044424//intracellular part	GO:0008509//anion transmembrane transporter activity;GO:0015291//secondary active transmembrane transporter activity;GO:0015197//peptide transporter activity;GO:0008028//monocarboxylic acid transmembrane transporter activity	GO:0015893//drug transport;GO:0009914//hormone transport;GO:0015711//organic anion transport;GO:0015833//peptide transport;GO:0031960//response to corticosteroid stimulus;GO:0002237//response to molecule of bacterial origin;GO:0015718//monocarboxylic acid transport;GO:0008202//steroid metabolic process	"gi|296487295|gb|DAA29408.1|/8.25578e-42/solute carrier organic anion transporter family, member 1B3 [Bos taurus]"
gnl|UG|Ssc#S35170367	4	1.15	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10087C12, expressed in ovary /gb=AK235494 /gi=115549472 /ug=Ssc.50000 /len=1958"	GO:0044431//Golgi apparatus part;GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0008238//exopeptidase activity;GO:0008237//metallopeptidase activity	GO:0019538//protein metabolic process	gi|165905571|ref|NP_776523.2|/0/cytosol aminopeptidase [Bos taurus]
gnl|UG|Ssc#S58304113	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa uncharacterized protein C3orf67-like (LOC100517424), mRNA /cds=p(1,1203) /gb=XM_003132284 /gi=311269077 /ug=Ssc.9856 /len=1203"	-	-	-	gi|311269078|ref|XP_003132332.1|/0/PREDICTED: uncharacterized protein C3orf67-like [Sus scrofa]
gnl|UG|Ssc#S18550635	0	0	0	0	3	0.9	"BX919286 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0004.f.03 5prim, mRNA sequence /clone=scan0004.f.03 /clone_end=5' /gb=BX919286 /gi=90231926 /ug=Ssc.62493 /len=824"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0045596//negative regulation of cell differentiation;GO:0000209//protein polyubiquitination;GO:0019941//modification-dependent protein catabolic process;GO:0010033//response to organic substance;GO:0000904//cell morphogenesis involved in differentiation	gi|194226237|ref|XP_001493113.2|/1.03794e-139/PREDICTED: similar to tetratricopeptide repeat domain 3 [Equus caballus]
gnl|UG|Ssc#S35166279	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10213C04, expressed in ovary /gb=AK236662 /gi=115553459 /ug=Ssc.49544 /len=1415"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0016411//acylglycerol O-acyltransferase activity	GO:0032501//multicellular organismal process;GO:0006644//phospholipid metabolic process	gi|218664497|ref|NP_001136317.1|/0/lysocardiolipin acyltransferase 1 [Sus scrofa]
gnl|UG|Ssc#S58314103	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa threonyl-tRNA synthetase-like 2 (TARSL2), mRNA /cds=p(22,2427) /gb=XM_003122298 /gi=311246797 /ug=Ssc.25548 /len=3217"	GO:0044424//intracellular part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|311246798|ref|XP_003122346.1|/0/PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-like [Sus scrofa]"
gnl|UG|Ssc#S55254383	4	1.15	0	0	12	3.61	"FS675357 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010062C01 5', mRNA sequence /clone=KDN010062C01 /clone_end=5' /gb=FS675357 /gi=288249586 /ug=Ssc.84047 /len=932"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0043565//sequence-specific DNA binding;GO:0005515//protein binding	GO:0010332//response to gamma radiation;GO:0006468//protein phosphorylation;GO:0035556//intracellular signal transduction;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0033554//cellular response to stress;GO:0008283//cell proliferation	gi|296216708|ref|XP_002754686.1|/2.82595e-139/PREDICTED: 65 kDa Yes-associated protein-like isoform 2 [Callithrix jacchus]
gnl|UG|Ssc#S58308812	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa mitofusin 2 (MFN2), mRNA /cds=p(1,1284) /gb=XM_003127588 /gi=311258479 /ug=Ssc.4507 /len=1284"	GO:0005741//mitochondrial outer membrane;GO:0031224//intrinsic to membrane;GO:0005856//cytoskeleton	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0019899//enzyme binding	GO:0007599//hemostasis;GO:0051640//organelle localization;GO:0046578//regulation of Ras protein signal transduction;GO:0006944//cellular membrane fusion;GO:0006605//protein targeting;GO:0001824//blastocyst development;GO:0008285//negative regulation of cell proliferation;GO:0009207;GO:0048592//eye morphogenesis;GO:0022402//cell cycle process;GO:0007005//mitochondrion organization	gi|311258480|ref|XP_003127636.1|/0/PREDICTED: mitofusin-2-like [Sus scrofa]
gnl|UG|Ssc#S58306095	18	5.18	4	1.14	23	6.91	"PREDICTED: Sus scrofa vesicle-associated membrane protein 4-like (LOC100512732), mRNA /cds=p(219,644) /gb=XM_003130297 /gi=311264816 /ug=Ssc.28051 /len=1594"	GO:0012505//endomembrane system;GO:0031224//intrinsic to membrane;GO:0000323//lytic vacuole	-	GO:0006810//transport	gi|311264817|ref|XP_003130345.1|/3.76715e-56/PREDICTED: vesicle-associated membrane protein 4-like [Sus scrofa]
gnl|UG|Ssc#S35167708	5	1.44	0	0	4	1.2	"Sus scrofa mRNA, clone:THY010080B06, expressed in thymus /gb=AK239224 /gi=115552031 /ug=Ssc.94806 /len=1384"	GO:0043231//intracellular membrane-bounded organelle	GO:0004520//endodeoxyribonuclease activity	-	gi|194215089|ref|XP_001497527.2|/8.03338e-20/PREDICTED: similar to TatD DNase domain containing 1 [Equus caballus]
gnl|UG|Ssc#S55312987	0	0	2	0.57	0	0	"FS688298 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRT10023F04 5', mRNA sequence /clone=OVRT10023F04 /clone_end=5' /gb=FS688298 /gi=288254636 /ug=Ssc.29571 /len=785"	-	GO:0032561	-	gi|300795270|ref|NP_001179426.1|/3.66268e-75/ADP-ribosylation factor-like protein 16 [Bos taurus]
gnl|UG|Ssc#S18549964	3	0.86	3	0.86	0	0	"BX918615 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0034.o.24 5prim, mRNA sequence /clone=scan0034.o.24 /clone_end=5' /gb=BX918615 /gi=90230724 /ug=Ssc.84808 /len=924"	GO:0005815//microtubule organizing center;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0043412;GO:0006396//RNA processing	"gi|297463563|ref|XP_581095.5|/7.26391e-57/PREDICTED: protein phosphatase 4, regulatory subunit 2 [Bos taurus]"
gnl|UG|Ssc#S35165904	2	0.58	5	1.43	4	1.2	"Sus scrofa mRNA, clone:PBL010018B03, expressed in periphral blood mononuclear cell /gb=AK236827 /gi=115553822 /ug=Ssc.22201 /len=1555"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0016866//intramolecular transferase activity;GO:0003713//transcription coactivator activity;GO:0016836//hydro-lyase activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006399//tRNA metabolic process;GO:0001522//pseudouridine synthesis	"gi|194043580|ref|XP_001928625.1|/0/PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 2 [Sus scrofa]"
gnl|UG|Ssc#S46881293	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A-like (LOC100154378), mRNA /cds=p(1,3303) /gb=XM_001927443 /gi=311243667 /ug=Ssc.66703 /len=3303"	GO:0005626//insoluble fraction;GO:0044444//cytoplasmic part;GO:0043025//neuronal cell body	"GO:0043169//cation binding;GO:0019002//GMP binding;GO:0004114//3',5'-cyclic-nucleotide phosphodiesterase activity;GO:0016208//AMP binding"	GO:0006195//purine nucleotide catabolic process;GO:0001775//cell activation;GO:0023052//signaling;GO:0007599//hemostasis	"gi|311243668|ref|XP_001927478.2|/0/PREDICTED: cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A-like [Sus scrofa]"
gnl|UG|Ssc#S58313835	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa protein phosphatase 2, regulatory subunit B', beta (PPP2R5B), mRNA /cds=p(1,1494) /gb=XM_003122552 /gi=311247366 /ug=Ssc.4642 /len=2119"	GO:0043231//intracellular membrane-bounded organelle;GO:0008287//protein serine/threonine phosphatase complex	GO:0019888//protein phosphatase regulator activity;GO:0005488//binding	GO:0070848//response to growth factor stimulus;GO:0006461//protein complex assembly;GO:0010975//regulation of neuron projection development;GO:0007050//cell cycle arrest;GO:0001932//regulation of protein phosphorylation;GO:0009967//positive regulation of signal transduction;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0043388//positive regulation of DNA binding;GO:0010948	gi|311247367|ref|XP_003122600.1|/0/PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform-like [Sus scrofa]
gnl|UG|Ssc#S58313199	22	6.33	2	0.57	7	2.1	"PREDICTED: Sus scrofa SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 (SMARCA4), mRNA /cds=p(303,4730) /gb=XM_003123201 /gi=311248655 /ug=Ssc.75520 /len=4754"	GO:0070603//SWI/SNF-type complex	"GO:0030528//transcription regulator activity;GO:0042393//histone binding;GO:0000166//nucleotide binding;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0035258//steroid hormone receptor binding;GO:0042623//ATPase activity, coupled"	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0033144//negative regulation of steroid hormone receptor signaling pathway;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0007090//regulation of S phase of mitotic cell cycle;GO:0043388//positive regulation of DNA binding;GO:0016568//chromatin modification	gi|311248656|ref|XP_003123249.1|/0/PREDICTED: LOW QUALITY PROTEIN: transcription activator BRG1 [Sus scrofa]
gnl|UG|Ssc#S35169360	797	229.46	1071	306.14	538	161.68	"Sus scrofa mRNA, clone:THY010023H05, expressed in thymus /gb=AK238744 /gi=115550479 /ug=Ssc.1750 /len=1459"	GO:0031981//nuclear lumen;GO:0043234//protein complex	GO:0017111//nucleoside-triphosphatase activity;GO:0032559	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0009207;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0001701//in utero embryonic development"	gi|5729991|ref|NP_006494.1|/0/26S protease regulatory subunit 6B isoform 1 [Homo sapiens]
gnl|UG|Ssc#S46875915	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa DEAH (Asp-Glu-Ala-His) box polypeptide 35, transcript variant 1 (DHX35), mRNA /cds=p(26,2137) /gb=XM_001929022 /gi=311274862 /ug=Ssc.37255 /len=3316"	GO:0005681//spliceosomal complex	"GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0000377	gi|194044592|ref|XP_001929057.1|/0/PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S34508477	4	1.15	5	1.43	4	1.2	"DB817497 full-length enriched swine cDNA library, adult trachea Sus scrofa cDNA 3', mRNA sequence /clone=TCH010040B06 /clone_end=3' /gb=DB817497 /gi=112762950 /ug=Ssc.1849 /len=864"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0005488//binding;GO:0004549//tRNA-specific ribonuclease activity	"GO:0006388//tRNA splicing, via endonucleolytic cleavage and ligation"	gi|194215985|ref|XP_001488528.2|/1.69479e-87/PREDICTED: similar to tRNA splicing endonuclease 34 homolog (predicted) [Equus caballus]
gnl|UG|Ssc#S35171001	3	0.86	8	2.29	5	1.5	"Sus scrofa mRNA, clone:OVRM10060H08, expressed in ovary /gb=AK235241 /gi=115548838 /ug=Ssc.38821 /len=2723"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|115495777|ref|NP_001068916.1|/0/myb-related protein B [Bos taurus]
gnl|UG|Ssc#S58304243	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa zinc finger protein 729-like (LOC100512863), mRNA /cds=p(1,4614) /gb=XM_003132156 /gi=311268770 /ug=Ssc.30410 /len=4682"	-	-	-	gi|311268771|ref|XP_003132204.1|/0/PREDICTED: zinc finger protein 729-like [Sus scrofa]
gnl|UG|Ssc#S58307117	2	0.58	7	2	0	0	"PREDICTED: Sus scrofa CXXC-type zinc finger protein 4-like (LOC100521810), mRNA /cds=p(55,651) /gb=XM_003129280 /gi=311262732 /ug=Ssc.87018 /len=1062"	GO:0031410//cytoplasmic vesicle	GO:0046914//transition metal ion binding;GO:0019904//protein domain specific binding;GO:0003676//nucleic acid binding	GO:0016055//Wnt receptor signaling pathway;GO:0000578//embryonic axis specification	gi|297674084|ref|XP_002815069.1|/6.22197e-96/PREDICTED: CXXC-type zinc finger protein 4-like [Pongo abelii]
gnl|UG|Ssc#S23770734	8	2.3	2	0.57	0	0	"1142423 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN128353 /gi=59822632 /ug=Ssc.19342 /len=845"	-	-	-	-
gnl|UG|Ssc#S35172547	0	0	5	1.43	6	1.8	"Sus scrofa mRNA, clone:OVRM10003F12, expressed in ovary /gb=AK234661 /gi=115547288 /ug=Ssc.43912 /len=1958"	-	-	-	gi|296210653|ref|XP_002752064.1|/2.14262e-11/PREDICTED: hypothetical protein LOC100392338 [Callithrix jacchus]
gnl|UG|Ssc#S58302728	3	0.86	2	0.57	6	1.8	"PREDICTED: Sus scrofa dnaJ homolog subfamily B member 2-like (LOC100522168), mRNA /cds=p(114,1091) /gb=XM_003133668 /gi=311273103 /ug=Ssc.12198 /len=1091"	GO:0043234//protein complex;GO:0044424//intracellular part	GO:0031072//heat shock protein binding;GO:0043130//ubiquitin binding;GO:0032403//protein complex binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0048523//negative regulation of cellular process;GO:0016049//cell growth;GO:0016567//protein ubiquitination;GO:0031331;GO:0016579//protein deubiquitination;GO:0008283//cell proliferation;GO:0006950//response to stress	gi|311273104|ref|XP_003133716.1|/4.60596e-118/PREDICTED: dnaJ homolog subfamily B member 2-like [Sus scrofa]
gnl|UG|Ssc#S58305381	5	1.44	0	0	5	1.5	"PREDICTED: Sus scrofa kelch-like 1 (Drosophila) (KLHL1), mRNA /cds=p(453,2705) /gb=XM_003131017 /gi=311266364 /ug=Ssc.79429 /len=3075"	-	-	-	-
gnl|UG|Ssc#S58311959	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa DNA-directed RNA polymerase III subunit RPC9-like (LOC100517396), mRNA /cds=p(49,495) /gb=XM_003124441 /gi=311251189 /ug=Ssc.48258 /len=2413"	GO:0042575;GO:0030141//stored secretory granule;GO:0016020//membrane	GO:0005488//binding;GO:0034062//RNA polymerase activity;GO:0004930//G-protein coupled receptor activity	"GO:0006952//defense response;GO:0051707//response to other organism;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0006351//transcription, DNA-dependent;GO:0007338//single fertilization"	gi|311251190|ref|XP_003124489.1|/4.90922e-77/PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Sus scrofa]
gnl|UG|Ssc#S58304224	11	3.17	5	1.43	15	4.51	"PREDICTED: Sus scrofa SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (SMARCC1), mRNA /cds=p(1,3000) /gb=XM_003132176 /gi=311268823 /ug=Ssc.38668 /len=3225"	GO:0070603//SWI/SNF-type complex;GO:0001739//sex chromatin	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0005515//protein binding	GO:0016568//chromatin modification;GO:0048731;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009653//anatomical structure morphogenesis	gi|311268824|ref|XP_003132224.1|/0/PREDICTED: SWI/SNF complex subunit SMARCC1-like [Sus scrofa]
gnl|UG|Ssc#S35166694	2	0.58	0	0	7	2.1	"Sus scrofa mRNA, clone:THY010117G07, expressed in thymus /gb=AK239631 /gi=115553045 /ug=Ssc.11848 /len=2213"	GO:0044451//nucleoplasm part	GO:0003676//nucleic acid binding;GO:0034062//RNA polymerase activity	"GO:0051707//response to other organism;GO:0006355//regulation of transcription, DNA-dependent;GO:0031349//positive regulation of defense response;GO:0032481//positive regulation of type I interferon production"	gi|194210894|ref|XP_001499327.2|/0/PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Equus caballus]
gnl|UG|Ssc#S58310010	29	8.35	2	0.57	17	5.11	"PREDICTED: Sus scrofa KRR1 small subunit processome component homolog (LOC100523737), mRNA /cds=p(77,1204) /gb=XM_003126388 /gi=311255953 /ug=Ssc.51480 /len=1671"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0042254//ribosome biogenesis	gi|311255954|ref|XP_003126436.1|/3.73222e-171/PREDICTED: KRR1 small subunit processome component homolog [Sus scrofa]
gnl|UG|Ssc#S29975420	10	2.88	3	0.86	7	2.1	"PDUts1098F08 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1098F08 5' similar to homologue to gb|AY550069.1| Sus scrofa cytoskeletal beta actin mRNA, partial cds, mRNA sequence /clone=PDUts1098F08 /clone_end=5' /gb=CV872078 /gi=84126038 /ug=Ssc.29260 /len=668"	GO:0043232	GO:0032559	-	gi|308511873|ref|XP_003118119.1|/3.94754e-42/hypothetical protein CRE_00778 [Caenorhabditis remanei]
gnl|UG|Ssc#S20952291	0	0	0	0	0	0	"AJ664197 CSEQRAN09 Sus scrofa cDNA clone C0001063_F02, mRNA sequence /clone=C0001063_F02 /gb=AJ664197 /gi=49348634 /ug=Ssc.85913 /len=483"	-	-	-	-
gnl|UG|Ssc#S35168160	5	1.44	8	2.29	0	0	"Sus scrofa mRNA, clone:THY010054C12, expressed in thymus /gb=AK238994 /gi=115551530 /ug=Ssc.8640 /len=1290"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0016044//cellular membrane organization;GO:0006887//exocytosis;GO:0015031//protein transport	gi|47523922|ref|NP_999602.1|/4.95581e-101/NFS protein [Sus scrofa]
gnl|UG|Ssc#S35170406	7	2.02	7	2	3	0.9	"Sus scrofa mRNA, clone:OVRM10084A06, expressed in ovary /gb=AK235455 /gi=115549433 /ug=Ssc.27366 /len=2250"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|296472978|gb|DAA15093.1|/9.72652e-88/GTF2I repeat domain containing 2 [Bos taurus]
gnl|UG|Ssc#S35168298	3	0.86	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10150C01, expressed in ovary /gb=AK236070 /gi=115551392 /ug=Ssc.54478 /len=2228"	GO:0043232;GO:0044444//cytoplasmic part	GO:0008092//cytoskeletal protein binding	GO:0007599//hemostasis;GO:0001775//cell activation;GO:0006887//exocytosis;GO:0050954//sensory perception of mechanical stimulus	gi|62089078|dbj|BAD92983.1|/0/WD repeat-containing protein 1 isoform 1 variant [Homo sapiens]
gnl|UG|Ssc#S46881066	56	16.12	31	8.86	51	15.33	"PREDICTED: Sus scrofa UV excision repair protein RAD23 homolog B-like (LOC100153668), mRNA /cds=p(345,1571) /gb=XM_001927866 /gi=311246181 /ug=Ssc.79420 /len=2030"	-	-	-	-
gnl|UG|Ssc#S58309101	85	24.47	43	12.29	68	20.44	"PREDICTED: Sus scrofa BCL2-associated X protein (BAX), mRNA /cds=p(43,462) /gb=XM_003127290 /gi=311257895 /ug=Ssc.23470 /len=820"	GO:0031224//intrinsic to membrane;GO:0031966//mitochondrial membrane;GO:0000267//cell fraction	GO:0051400//BH domain binding;GO:0042802//identical protein binding;GO:0046983//protein dimerization activity	"GO:0010524//positive regulation of calcium ion transport into cytosol;GO:0001894//tissue homeostasis;GO:0035107//appendage morphogenesis;GO:0019740//nitrogen utilization;GO:0007006//mitochondrial membrane organization;GO:0048050//post-embryonic eye morphogenesis;GO:0002260//lymphocyte homeostasis;GO:0022603//regulation of anatomical structure morphogenesis;GO:0008406//gonad development;GO:0002339;GO:0015980//energy derivation by oxidation of organic compounds;GO:0048232//male gamete generation;GO:0021543//pallium development;GO:0042391//regulation of membrane potential;GO:0000737//DNA catabolic process, endonucleolytic;GO:0001783//B cell apoptosis;GO:0008624//induction of apoptosis by extracellular signals;GO:0032469//endoplasmic reticulum calcium ion homeostasis;GO:0001933//negative regulation of protein phosphorylation;GO:0006970//response to osmotic stress;GO:0042100//B cell proliferation;GO:0016477//cell migration;GO:0048070//regulation of developmental pigmentation;GO:0042476//odontogenesis;GO:0006916//anti-apoptosis;GO:0009411//response to UV;GO:0006919//activation of caspase activity;GO:0021536//diencephalon development;GO:0006923;GO:0048771//tissue remodeling;GO:0006944//cellular membrane fusion;GO:0010212//response to ionizing radiation;GO:0034220//ion transmembrane transport;GO:0010629//negative regulation of gene expression;GO:0006664//glycolipid metabolic process;GO:0043393//regulation of protein binding;GO:0042221//response to chemical stimulus;GO:0030262//apoptotic nuclear change;GO:0008637//apoptotic mitochondrial changes;GO:0010623//developmental programmed cell death;GO:0022602//ovulation cycle process;GO:0007049//cell cycle;GO:0008285//negative regulation of cell proliferation;GO:0033554//cellular response to stress;GO:0033598//mammary gland epithelial cell proliferation;GO:0051259//protein oligomerization;GO:0000266//mitochondrial fission;GO:0042098//T cell proliferation;GO:0009611//response to wounding"	gi|311257896|ref|XP_003127338.1|/1.67664e-73/PREDICTED: apoptosis regulator BAX [Sus scrofa]
gnl|UG|Ssc#S58307653	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa cytoplasmic dynein 1 heavy chain 1-like (LOC100517720), mRNA /cds=p(203,1699) /gb=XM_003128734 /gi=311261627 /ug=Ssc.53729 /len=1699"	GO:0030286//dynein complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0003774//motor activity;GO:0016887//ATPase activity;GO:0032559	GO:0000278//mitotic cell cycle;GO:0022402//cell cycle process;GO:0007017//microtubule-based process;GO:0051234//establishment of localization;GO:0022618//ribonucleoprotein complex assembly	gi|296475313|gb|DAA17428.1|/0/cytoplasmic dynein 1 heavy chain 1-like [Bos taurus]
gnl|UG|Ssc#S55326375	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10114E06, expressed in ovary /gb=AK348276 /gi=288778451 /ug=Ssc.82942 /len=2557"	-	-	-	gi|301759671|ref|XP_002915693.1|/2.09863e-25/PREDICTED: uncharacterized protein KIAA0090-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58304301	0	0	0	0	0	0	"PREDICTED: Sus scrofa programmed cell death 6-interacting protein-like (LOC100512811), mRNA /cds=p(1,2724) /gb=XM_003132097 /gi=311268640 /ug=Ssc.7293 /len=3599"	GO:0048770;GO:0015630//microtubule cytoskeleton	GO:0019904//protein domain specific binding	GO:0051704;GO:0006810//transport;GO:0012501//programmed cell death	gi|311268641|ref|XP_003132145.1|/0/PREDICTED: programmed cell death 6-interacting protein-like [Sus scrofa]
gnl|UG|Ssc#S58308479	3	0.86	0	0	7	2.1	"PREDICTED: Sus scrofa zinc finger, ZZ-type containing 3 (ZZZ3), mRNA /cds=p(166,2877) /gb=XM_003127920 /gi=311259166 /ug=Ssc.56393 /len=4023"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|311259167|ref|XP_003127968.1|/0/PREDICTED: ZZ-type zinc finger-containing protein 3-like [Sus scrofa]
gnl|UG|Ssc#S55321658	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:ITT010040F08, expressed in small intestine /gb=AK345029 /gi=288783214 /ug=Ssc.2570 /len=3708"	GO:0005815//microtubule organizing center;GO:0043227//membrane-bounded organelle;GO:0044459//plasma membrane part	"GO:0000166//nucleotide binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0042802//identical protein binding;GO:0048029//monosaccharide binding"	GO:0048469//cell maturation;GO:0006098//pentose-phosphate shunt;GO:0019302;GO:0008203//cholesterol metabolic process;GO:0006790//sulfur compound metabolic process;GO:0010731//protein glutathionylation;GO:0006979//response to oxidative stress	gi|311277271|ref|XP_003135556.1|/1.74798e-15/PREDICTED: glucose-6-phosphate 1-dehydrogenase X-like [Sus scrofa]
gnl|UG|Ssc#S46880898	7	2.02	3	0.86	8	2.4	"PREDICTED: Sus scrofa dehydrogenase/reductase (SDR family) member 7 (DHRS7), mRNA /cds=p(339,1358) /gb=XM_001928748 /gi=194034220 /ug=Ssc.6441 /len=1706"	-	GO:0003824//catalytic activity	GO:0008152//metabolic process	gi|194034221|ref|XP_001928783.1|/2.48234e-178/PREDICTED: dehydrogenase/reductase SDR family member 7 [Sus scrofa]
gnl|UG|Ssc#S58314456	40	11.52	7	2	38	11.42	"PREDICTED: Sus scrofa MAM domain-containing protein 2-like (LOC100514623), mRNA /cds=p(5,406) /gb=XM_003121946 /gi=311245885 /ug=Ssc.45652 /len=1344"	GO:0043231//intracellular membrane-bounded organelle;GO:0005578//proteinaceous extracellular matrix	GO:0030247//polysaccharide binding	GO:0018149//peptide cross-linking	gi|311245886|ref|XP_003121994.1|/1.14208e-71/PREDICTED: MAM domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S29989773	67	19.29	75	21.44	86	25.85	"PDUts2087E08 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2087E08 5', mRNA sequence /clone=PDUts2087E08 /clone_end=5' /gb=CX064247 /gi=84140389 /ug=Ssc.33642 /len=515"	-	-	-	-
gnl|UG|Ssc#S45783735	78	22.46	43	12.29	164	49.29	"Sus scrofa membrane-associated ring finger 6 (MARCH6) mRNA, complete cds /cds=p(179,2911) /gb=EU754825 /gi=190589909 /ug=Ssc.4366 /len=6525"	GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0046914//transition metal ion binding;GO:0019899//enzyme binding;GO:0019787//small conjugating protein ligase activity	GO:0000209//protein polyubiquitination	gi|114599033|ref|XP_517630.2|/0/PREDICTED: membrane-associated ring finger (C3HC4) 6 [Pan troglodytes]
gnl|UG|Ssc#S35167695	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:THY010082G01, expressed in thymus /gb=AK239237 /gi=115552044 /ug=Ssc.43938 /len=1197"	GO:0044444//cytoplasmic part	"GO:0016763//transferase activity, transferring pentosyl groups"	GO:0008655//pyrimidine-containing compound salvage;GO:0009112;GO:0046131;GO:0009117//nucleotide metabolic process	gi|296488718|gb|DAA30831.1|/4.72292e-143/uridine phosphorylase 1 [Bos taurus]
gnl|UG|Ssc#S18552426	59	16.99	82	23.44	70	21.04	"BX921077 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0004.h.17 5prim, mRNA sequence /clone=scan0004.h.17 /clone_end=5' /gb=BX921077 /gi=90229417 /ug=Ssc.13300 /len=749"	-	-	-	-
gnl|UG|Ssc#S35169550	9	2.59	3	0.86	20	6.01	"Sus scrofa mRNA, clone:OVRM10113E03, expressed in ovary /gb=AK235768 /gi=115550289 /ug=Ssc.19492 /len=3984"	GO:0031224//intrinsic to membrane	"GO:0043169//cation binding;GO:0042625//ATPase activity, coupled to transmembrane movement of ions;GO:0032559"	GO:0009206;GO:0006811//ion transport;GO:0009207	gi|311258601|ref|XP_003127693.1|/0/PREDICTED: probable cation-transporting ATPase 13A2-like [Sus scrofa]
gnl|UG|Ssc#S55322746	34	9.79	22	6.29	17	5.11	"Sus scrofa mRNA, clone:DCI010014E03, expressed in dendritic cells (immature) /gb=AK344337 /gi=288782126 /ug=Ssc.5281 /len=1646"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0030684//preribosome	GO:0005488//binding	GO:0000470;GO:0000460//maturation of 5.8S rRNA;GO:0007166//cell surface receptor linked signaling pathway	gi|311272918|ref|XP_003133640.1|/0/PREDICTED: ribosome biogenesis protein WDR12-like [Sus scrofa]
gnl|UG|Ssc#S55245833	2	0.58	0	0	0	0	"FS680641 full-length enriched swine cDNA library, adult longissimus Sus scrofa cDNA clone MLTL10026B04 5', mRNA sequence /clone=MLTL10026B04 /clone_end=5' /gb=FS680641 /gi=288235006 /ug=Ssc.93214 /len=595"	GO:0031672//A band;GO:0031674//I band	GO:0004672//protein kinase activity;GO:0008092//cytoskeletal protein binding	GO:0009888//tissue development;GO:0003012//muscle system process;GO:0033058//directional locomotion;GO:0007507//heart development;GO:0030239//myofibril assembly;GO:0043009//chordate embryonic development;GO:0050789//regulation of biological process;GO:0009887//organ morphogenesis;GO:0008152//metabolic process	gi|194222358|ref|XP_001917584.1|/5.64692e-97/PREDICTED: similar to titin [Equus caballus]
gnl|UG|Ssc#S18557668	108	31.09	236	67.46	167	50.19	"BX926319 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0021.c.05 5prim, mRNA sequence /clone=scan0021.c.05 /clone_end=5' /gb=BX926319 /gi=90228892 /ug=Ssc.62566 /len=739"	-	-	-	-
gnl|UG|Ssc#S42160370	7	2.02	15	4.29	3	0.9	"Sus scrofa SR rich protein (SRrp130) mRNA, complete cds /cds=p(216,2633) /gb=EU308569 /gi=163716675 /ug=Ssc.4119 /len=3227"	GO:0005634//nucleus	-	-	"gi|164664446|ref|NP_001106910.1|/0/splicing factor, arginine/serine-rich 18 [Sus scrofa]"
gnl|UG|Ssc#S55324141	32	9.21	72	20.58	51	15.33	"Sus scrofa mRNA, clone:SMG010062A04, expressed in submaxillary gland /gb=AK350067 /gi=288780731 /ug=Ssc.77714 /len=1443"	GO:0031224//intrinsic to membrane	GO:0008252//nucleotidase activity;GO:0016462//pyrophosphatase activity;GO:0032559	GO:0009141//nucleoside triphosphate metabolic process;GO:0009132//nucleoside diphosphate metabolic process	gi|301782483|ref|XP_002926657.1|/1.3453e-57/PREDICTED: ectonucleoside triphosphate diphosphohydrolase 3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46876743	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa phosphatidylinositol transfer protein, membrane-associated 2 (PITPNM2), mRNA /cds=p(258,4223) /gb=XM_001928420 /gi=311270578 /ug=Ssc.38257 /len=4579"	GO:0031224//intrinsic to membrane;GO:0000267//cell fraction;GO:0043232;GO:0043227//membrane-bounded organelle	GO:0046872//metal ion binding	GO:0051234//establishment of localization	gi|194042873|ref|XP_001928455.1|/0/PREDICTED: membrane-associated phosphatidylinositol transfer protein 2 [Sus scrofa]
gnl|UG|Ssc#S40004315	24	6.91	28	8	42	12.62	"rece22c_b20.y1 ece Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW099224 /gi=181328819 /ug=Ssc.4409 /len=506"	-	-	-	-
gnl|UG|Ssc#S35169183	25	7.2	9	2.57	35	10.52	"Sus scrofa mRNA, clone:LVR010053B07, expressed in liver /gb=AK232486 /gi=115550656 /ug=Ssc.44795 /len=2212"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0044429//mitochondrial part	GO:0004673//protein histidine kinase activity;GO:0042802//identical protein binding;GO:0046983//protein dimerization activity;GO:0032559	GO:0006468//protein phosphorylation;GO:0019318//hexose metabolic process;GO:0006086//acetyl-CoA biosynthetic process from pyruvate;GO:0007165//signal transduction	gi|194217099|ref|XP_001917715.1|/0/PREDICTED: similar to pyruvate dehydrogenase kinase 2 subunit p45 [Equus caballus]
gnl|UG|Ssc#S55318714	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:MLN010053F10, expressed in mesenteric lymph nodes /gb=AK346778 /gi=288786170 /ug=Ssc.24511 /len=996"	GO:0044444//cytoplasmic part	-	-	gi|311250794|ref|XP_003124303.1|/4.83454e-47/PREDICTED: cytochrome c oxidase assembly protein COX19-like [Sus scrofa]
gnl|UG|Ssc#S58301315	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa prickle-like protein 3-like (LOC100512323), mRNA /cds=p(28,1896) /gb=XM_003135080 /gi=311276272 /ug=Ssc.64051 /len=2133"	-	GO:0046914//transition metal ion binding	-	gi|311276273|ref|XP_003135128.1|/0/PREDICTED: prickle-like protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58309525	5	1.44	4	1.14	3	0.9	"PREDICTED: Sus scrofa ATP-dependent RNA helicase DDX19A-like, transcript variant 1 (LOC100524144), mRNA /cds=p(100,1536) /gb=XM_003126869 /gi=311257029 /ug=Ssc.12294 /len=2996"	GO:0005635//nuclear envelope	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0012502//induction of programmed cell death;GO:0010038//response to metal ion;GO:0006405//RNA export from nucleus;GO:0009207	gi|311257030|ref|XP_003126917.1|/0/PREDICTED: ATP-dependent RNA helicase DDX19A-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58312407	2	0.58	2	0.57	7	2.1	"PREDICTED: Sus scrofa CXXC-type zinc finger protein 5-like (LOC100524854), mRNA /cds=p(656,1624) /gb=XM_003123994 /gi=311250275 /ug=Ssc.9048 /len=1856"	GO:0043231//intracellular membrane-bounded organelle	GO:0060089;GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0007249//I-kappaB kinase/NF-kappaB cascade	gi|311250276|ref|XP_003124042.1|/8.45402e-127/PREDICTED: CXXC-type zinc finger protein 5-like [Sus scrofa]
gnl|UG|Ssc#S20935196	3103	893.37	3333	952.73	3644	1095.12	"AJ646919 CSEQRAN19 Sus scrofa cDNA clone C0003104_B08, mRNA sequence /clone=C0003104_B08 /gb=AJ646919 /gi=49323764 /ug=Ssc.74022 /len=483"	GO:0043231//intracellular membrane-bounded organelle;GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|89628429|gb|ABD77505.1|/2.491e-49/60S ribosomal protein L34-like protein [Ovis aries]
gnl|UG|Ssc#S58307109	335	96.45	274	78.32	928	278.89	"PREDICTED: Sus scrofa ubiquitin-conjugating enzyme E2 D3-like (LOC100523265), mRNA /cds=p(654,1097) /gb=XM_003129287 /gi=311262748 /ug=Ssc.7870 /len=5290"	GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0019787//small conjugating protein ligase activity;GO:0032559	GO:0012501//programmed cell death;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0006259//DNA metabolic process;GO:0000209//protein polyubiquitination;GO:0033554//cellular response to stress;GO:0001818//negative regulation of cytokine production;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway	"gi|295789408|pdb|3L1Z|A/3.73886e-83/Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme"
gnl|UG|Ssc#S55326123	2	0.58	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10193B11, expressed in ovary /gb=AK348528 /gi=288778703 /ug=Ssc.76226 /len=1865"	-	-	-	-
gnl|UG|Ssc#S23763658	24	6.91	17	4.86	4	1.2	"1121364 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN121277 /gi=59815556 /ug=Ssc.1778 /len=879"	-	GO:0016301//kinase activity;GO:0032559	GO:0046335//ethanolamine biosynthetic process;GO:0006656//phosphatidylcholine biosynthetic process;GO:0048513//organ development;GO:0006796//phosphate metabolic process	gi|222090418|gb|ACM42417.1|/1.00832e-143/choline/ethanolamine kinase [Sus scrofa]
gnl|UG|Ssc#S19537410	0	0	0	0	2	0.6	"940726 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN153594 /gi=46168024 /ug=Ssc.81465 /len=667"	GO:0005815//microtubule organizing center;GO:0043234//protein complex;GO:0016604//nuclear body	GO:0003723//RNA binding;GO:0042802//identical protein binding;GO:0019899//enzyme binding;GO:0003824//catalytic activity	"GO:0051259//protein oligomerization;GO:0000377;GO:0031124//mRNA 3'-end processing;GO:0006353//transcription termination, DNA-dependent"	"gi|310942946|pdb|3P5T|A/9.37403e-52/Chain A, Cfim25-Cfim68 Complex"
gnl|UG|Ssc#S55318309	4	1.15	2	0.57	5	1.5	"Sus scrofa mRNA, clone:MLN010099A09, expressed in mesenteric lymph nodes /gb=AK347057 /gi=288786575 /ug=Ssc.13186 /len=1344"	GO:0005626//insoluble fraction;GO:0005667//transcription factor complex;GO:0043232;GO:0044444//cytoplasmic part	"GO:0003712//transcription cofactor activity;GO:0004674//protein serine/threonine kinase activity;GO:0032559;GO:0035258//steroid hormone receptor binding;GO:0042623//ATPase activity, coupled"	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006397//mRNA processing;GO:0030518//steroid hormone receptor signaling pathway;GO:0006352//transcription initiation, DNA-dependent;GO:0006796//phosphate metabolic process;GO:0051320;GO:0006353//transcription termination, DNA-dependent;GO:0051318//G1 phase;GO:0009207;GO:0006289//nucleotide-excision repair;GO:0051726//regulation of cell cycle;GO:0006354//transcription elongation, DNA-dependent;GO:0006464//protein modification process;GO:0045935"	gi|261490774|ref|NP_001159786.1|/0/cell division protein kinase 7 [Sus scrofa]
gnl|UG|Ssc#S58303544	0	0	0	0	0	0	"PREDICTED: Sus scrofa putative E3 ubiquitin-protein ligase SH3RF1-like (LOC100157666), mRNA /cds=p(406,2169) /gb=XM_003132851 /gi=311270488 /ug=Ssc.70842 /len=3437"	GO:0044464//cell part	GO:0005515//protein binding	GO:0048522;GO:0009966//regulation of signal transduction	gi|311270489|ref|XP_003132899.1|/0/PREDICTED: putative E3 ubiquitin-protein ligase SH3RF1-like [Sus scrofa]
gnl|UG|Ssc#S58308399	45	12.96	39	11.15	33	9.92	"PREDICTED: Sus scrofa nardilysin (N-arginine dibasic convertase), transcript variant 2 (NRD1), mRNA /cds=p(171,3872) /gb=XM_003127979 /gi=311259331 /ug=Ssc.5824 /len=4378"	GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0019838//growth factor binding;GO:0016787//hydrolase activity	GO:0048741//skeletal muscle fiber development;GO:0048870//cell motility;GO:0019538//protein metabolic process;GO:0031331;GO:0052547//regulation of peptidase activity	gi|311259332|ref|XP_003128027.1|/0/PREDICTED: nardilysin-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55325384	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:PTG010035C12, expressed in pituitary gland /gb=AK349267 /gi=288779442 /ug=Ssc.61925 /len=1744"	GO:0031981//nuclear lumen	GO:0008192;GO:0032561;GO:0019204//nucleotide phosphatase activity;GO:0004721//phosphoprotein phosphatase activity	"GO:0006470//protein dephosphorylation;GO:0051704;GO:0006351//transcription, DNA-dependent;GO:0006397//mRNA processing"	gi|73973895|ref|XP_539035.2|/0/PREDICTED: similar to mRNA capping enzyme (HCE) (HCAP1) [Canis familiaris]
gnl|UG|Ssc#S46876279	7	2.02	0	0	4	1.2	"PREDICTED: Sus scrofa zinc finger protein 142 (ZNF142), partial mRNA /cds=p(1,3759) /gb=XM_001925246 /gi=311273054 /ug=Ssc.5522 /len=4175"	-	-	-	"gi|194043831|ref|XP_001925281.1|/0/PREDICTED: zinc finger protein 142, partial [Sus scrofa]"
gnl|UG|Ssc#S40167985	45	12.96	32	9.15	27	8.11	"ri11320b_k9.y1 ill Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW262892 /gi=182555008 /ug=Ssc.25730 /len=545"	GO:0031224//intrinsic to membrane	-	-	gi|297463618|ref|XP_001251558.3|/6.22818e-38/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S40389046	70	20.15	90	25.73	89	26.75	"rova036_b16.y1 ova Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW483653 /gi=182823439 /ug=Ssc.92179 /len=579"	GO:0043231//intracellular membrane-bounded organelle;GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|73972656|ref|XP_864033.1|/2.56901e-43/PREDICTED: similar to ribosomal protein L10a isoform 9 [Canis familiaris]
gnl|UG|Ssc#S41578643	68	19.58	34	9.72	61	18.33	"Sus scrofa euchromatic histone-lysine N-methyltransferase 2 (Ehmt2) mRNA, complete cds /cds=p(813,4451) /gb=EU219914 /gi=159895629 /ug=Ssc.12499 /len=4744"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0018024//histone-lysine N-methyltransferase activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0040007//growth;GO:0006305;GO:0018022//peptidyl-lysine methylation;GO:0007128//meiotic prophase I;GO:0007281//germ cell development;GO:0007129//synapsis;GO:0034968//histone lysine methylation	gi|159895630|gb|ABX10189.1|/0/euchromatic histone-lysine N-methyltransferase 2 [Sus scrofa]
gnl|UG|Ssc#S58306352	42	12.09	28	8	31	9.32	"PREDICTED: Sus scrofa etoposide-induced protein 2.4 homolog (LOC100511341), mRNA /cds=p(241,1263) /gb=XM_003130045 /gi=311264289 /ug=Ssc.11362 /len=2564"	GO:0031224//intrinsic to membrane	-	GO:0012502//induction of programmed cell death;GO:0016049//cell growth;GO:0042221//response to chemical stimulus	gi|6468762|gb|AAC39531.2|/1.39783e-170/Pig8 [Homo sapiens]
gnl|UG|Ssc#S35164447	47	13.53	19	5.43	38	11.42	"Sus scrofa mRNA, clone:MLN010061H08, expressed in mesenteric lymph node /gb=AK233894 /gi=115555279 /ug=Ssc.17613 /len=1407"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0015020//glucuronosyltransferase activity;GO:0046914//transition metal ion binding	GO:0006023	gi|194218315|ref|XP_001494810.2|/4.94412e-166/PREDICTED: similar to glucuronosyltransferase I [Equus caballus]
gnl|UG|Ssc#S23213539	2	0.58	2	0.57	0	0	"Sus scrofa clone Clu_11527.scr.msk.p1.Contig8, mRNA sequence /gb=AY609438 /gi=52350723 /ug=Ssc.12361 /len=1394"	-	GO:0051998;GO:0005488//binding	GO:0006479//protein methylation	gi|311251376|ref|XP_003124581.1|/1.62246e-169/PREDICTED: leucine carboxyl methyltransferase 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S40514457	7	2.02	0	0	9	2.7	"sto213_c16.z1 sto Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW609063 /gi=183086775 /ug=Ssc.79566 /len=613"	-	-	-	-
gnl|UG|Ssc#S55325424	0	0	0	0	19	5.71	"Sus scrofa mRNA, clone:PTG010026D01, expressed in pituitary gland /gb=AK349227 /gi=288779402 /ug=Ssc.16648 /len=2077"	-	-	-	-
gnl|UG|Ssc#S35169870	11	3.17	42	12.01	19	5.71	"Sus scrofa mRNA, clone:LNG010103C10, expressed in lung /gb=AK232204 /gi=115549969 /ug=Ssc.23207 /len=1534"	GO:0035097//histone methyltransferase complex;GO:0000803	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0019904//protein domain specific binding;GO:0019787//small conjugating protein ligase activity	GO:0007369//gastrulation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0016567//protein ubiquitination;GO:0009798//axis specification;GO:0007049//cell cycle	"gi|148707518|gb|EDL39465.1|/0/ring finger protein 2, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S46881139	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100155130 (LOC100155130), mRNA /cds=p(1,1341) /gb=XM_001926498 /gi=311246630 /ug=Ssc.27835 /len=1400"	GO:0000323//lytic vacuole;GO:0031982//vesicle;GO:0043232;GO:0016020//membrane	GO:0005515//protein binding	GO:0048731;GO:0016192//vesicle-mediated transport	gi|311246631|ref|XP_001926533.2|/4.86059e-89/PREDICTED: hypothetical protein LOC100155130 [Sus scrofa]
gnl|UG|Ssc#S33389640	2	0.58	0	0	0	0	"Sus scrofa voltage-gated potassium channel shaker-related subfamily beta member 1 transcript variant 3 (Kcnab1) mRNA, complete cds, alternatively spliced /cds=p(875,2080) /gb=AY866527 /gi=66775660 /ug=Ssc.42670 /len=3813"	GO:0031224//intrinsic to membrane;GO:0044424//intracellular part	GO:0005488//binding;GO:0005267//potassium channel activity;GO:0003824//catalytic activity;GO:0016247//channel regulator activity	GO:0034220//ion transmembrane transport;GO:0008152//metabolic process;GO:0030001//metal ion transport	gi|157427715|ref|NP_001098764.1|/0/voltage-gated potassium channel subunit beta-1 [Sus scrofa]
gnl|UG|Ssc#S58308585	40	11.52	24	6.86	33	9.92	"PREDICTED: Sus scrofa poly(A) binding protein, cytoplasmic 4 (inducible form) (PABPC4), mRNA /cds=p(538,2460) /gb=XM_003127813 /gi=311258947 /ug=Ssc.70587 /len=2748"	GO:0032991//macromolecular complex;GO:0044424//intracellular part	GO:0003729//mRNA binding;GO:0008187//poly-pyrimidine tract binding	GO:0007599//hemostasis;GO:0010467//gene expression;GO:0016070//RNA metabolic process	gi|311258948|ref|XP_003127861.1|/0/PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
gnl|UG|Ssc#S19547879	2	0.58	2	0.57	4	1.2	"994161 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN164046 /gi=46178476 /ug=Ssc.24696 /len=842"	-	-	-	-
gnl|UG|Ssc#S55319980	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:LVRM10053F07, expressed in liver /gb=AK346110 /gi=288784904 /ug=Ssc.44114 /len=3638"	GO:0000267//cell fraction;GO:0005764//lysosome	GO:0030246//carbohydrate binding;GO:0004558//alpha-glucosidase activity	GO:0003011//involuntary skeletal muscle contraction;GO:0008016//regulation of heart contraction;GO:0005984//disaccharide metabolic process;GO:0007033//vacuole organization;GO:0051651//maintenance of location in cell;GO:0005977//glycogen metabolic process;GO:0007610//behavior;GO:0055008//cardiac muscle tissue morphogenesis;GO:0019725//cellular homeostasis;GO:0019318//hexose metabolic process;GO:0050905//neuromuscular process	gi|311266679|ref|XP_003131189.1|/0/PREDICTED: lysosomal alpha-glucosidase-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55320630	3	0.86	0	0	4	1.2	"Sus scrofa mRNA, clone:THY010030H04, expressed in thymus /gb=AK351532 /gi=288784242 /ug=Ssc.7789 /len=2659"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0003702//RNA polymerase II transcription factor activity	"GO:0006355//regulation of transcription, DNA-dependent"	gi|73988469|ref|XP_542502.2|/0/PREDICTED: similar to Zinc finger protein 143 (SPH-binding factor) isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58303797	10	2.88	10	2.86	10	3.01	"PREDICTED: Sus scrofa ATPase type 13A3 (ATP13A3), mRNA /cds=p(1,3681) /gb=XM_003132599 /gi=311269807 /ug=Ssc.22482 /len=3681"	GO:0031224//intrinsic to membrane	"GO:0043169//cation binding;GO:0042625//ATPase activity, coupled to transmembrane movement of ions;GO:0032559"	GO:0009206;GO:0006811//ion transport;GO:0009207	gi|311269808|ref|XP_003132647.1|/0/PREDICTED: probable cation-transporting ATPase 13A3-like [Sus scrofa]
gnl|UG|Ssc#S58301780	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae) (JHDM1D), mRNA /cds=p(1,2829) /gb=XM_003134614 /gi=311275282 /ug=Ssc.31179 /len=2829"	GO:0031981//nuclear lumen	"GO:0032452//histone demethylase activity;GO:0042393//histone binding;GO:0046914//transition metal ion binding;GO:0016706//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	"GO:0006355//regulation of transcription, DNA-dependent;GO:0007420//brain development;GO:0070076//histone lysine demethylation"	gi|311275283|ref|XP_003134662.1|/0/PREDICTED: lysine-specific demethylase 7-like [Sus scrofa]
gnl|UG|Ssc#S35167518	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:AMP010006F05, expressed in alveolar macrophage /gb=AK230530 /gi=115552221 /ug=Ssc.50087 /len=2020"	GO:0043231//intracellular membrane-bounded organelle;GO:0005876//spindle microtubule;GO:0000776//kinetochore;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0000075//cell cycle checkpoint;GO:0007067//mitosis;GO:0065003;GO:0007346//regulation of mitotic cell cycle	gi|40788891|dbj|BAA11483.2|/0/KIAA0166 [Homo sapiens]
gnl|UG|Ssc#S55318850	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:UTR010050A09, expressed in uterus /gb=AK352320 /gi=288786034 /ug=Ssc.1276 /len=1032"	GO:0043231//intracellular membrane-bounded organelle;GO:0000267//cell fraction	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0005488//binding	GO:0043542//endothelial cell migration;GO:0044259;GO:0045596//negative regulation of cell differentiation;GO:0034613//cellular protein localization;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0031647//regulation of protein stability;GO:0012501//programmed cell death;GO:0010033//response to organic substance;GO:0001944//vasculature development;GO:0001885//endothelial cell development;GO:0010627//regulation of intracellular protein kinase cascade;GO:0022603//regulation of anatomical structure morphogenesis;GO:0043392//negative regulation of DNA binding;GO:0009887//organ morphogenesis;GO:0048646//anatomical structure formation involved in morphogenesis	gi|311274676|ref|XP_003134425.1|/2.17972e-88/PREDICTED: DNA-binding protein inhibitor ID-1-like [Sus scrofa]
gnl|UG|Ssc#S23212904	130	37.43	155	44.31	124	37.27	"Sus scrofa clone Clu_7116.scr.msk.p1.Contig1, mRNA sequence /gb=AY610104 /gi=52351674 /ug=Ssc.18469 /len=936"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0004871//signal transducer activity;GO:0016251//general RNA polymerase II transcription factor activity;GO:0008134//transcription factor binding;GO:0003713//transcription coactivator activity	"GO:0030518//steroid hormone receptor signaling pathway;GO:0006352//transcription initiation, DNA-dependent"	gi|311276445|ref|XP_003135209.1|/1.82314e-77/PREDICTED: mediator of RNA polymerase II transcription subunit 30-like [Sus scrofa]
gnl|UG|Ssc#S46879780	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa chloride channel CLIC-like 1 (CLCC1), partial mRNA /cds=p(1,1335) /gb=XM_001927217 /gi=311254670 /ug=Ssc.36335 /len=1765"	GO:0042598//vesicular fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005253//anion channel activity	GO:0015698//inorganic anion transport	"gi|311254671|ref|XP_001927252.2|/0/PREDICTED: chloride channel CLIC-like 1, partial [Sus scrofa]"
gnl|UG|Ssc#S55321244	58	16.7	45	12.86	53	15.93	"Sus scrofa mRNA, clone:ITT010089E06, expressed in small intestine /gb=AK345243 /gi=288783628 /ug=Ssc.44647 /len=2733"	GO:0005815//microtubule organizing center;GO:0030054//cell junction;GO:0043231//intracellular membrane-bounded organelle	GO:0019902//phosphatase binding;GO:0004713//protein tyrosine kinase activity;GO:0032559	GO:0006796//phosphate metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050851//antigen receptor-mediated signaling pathway;GO:0007599//hemostasis;GO:0008283//cell proliferation;GO:0031294;GO:0006464//protein modification process	gi|301775210|ref|XP_002923022.1|/0/PREDICTED: tyrosine-protein kinase CSK-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46877184	2	0.58	5	1.43	4	1.2	"PREDICTED: Sus scrofa TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa (TAF5), mRNA /cds=p(36,2438) /gb=XM_001929335 /gi=311271789 /ug=Ssc.6477 /len=3898"	GO:0005856//cytoskeleton;GO:0005667//transcription factor complex	GO:0030528//transcription regulator activity;GO:0004468//lysine N-acetyltransferase activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0005515//protein binding	"GO:0051704;GO:0006352//transcription initiation, DNA-dependent;GO:0006325//chromatin organization;GO:0006354//transcription elongation, DNA-dependent"	gi|194041961|ref|XP_001929370.1|/0/PREDICTED: transcription initiation factor TFIID subunit 5 [Sus scrofa]
gnl|UG|Ssc#S35172553	9	2.59	2	0.57	5	1.5	"Sus scrofa mRNA, clone:OVRM10003D11, expressed in ovary /gb=AK234655 /gi=115547282 /ug=Ssc.7688 /len=1602"	GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part	GO:0048037//cofactor binding;GO:0042802//identical protein binding;GO:0043169//cation binding;GO:0016453	GO:0007417//central nervous system development;GO:0010033//response to organic substance;GO:0043438//acetoacetic acid metabolic process;GO:0009063//cellular amino acid catabolic process;GO:0051259//protein oligomerization;GO:0072019//proximal convoluted tubule development;GO:0009719;GO:0006950//response to stress;GO:0044249//cellular biosynthetic process	gi|291383945|ref|XP_002708538.1|/0/PREDICTED: acetyl-Coenzyme A acetyltransferase 1 [Oryctolagus cuniculus]
gnl|UG|Ssc#S58301027	16	4.61	9	2.57	16	4.81	"PREDICTED: Sus scrofa u3 small nucleolar RNA-associated protein 14 homolog A-like, transcript variant 1 (LOC100523416), mRNA /cds=p(24,2345) /gb=XM_003135366 /gi=311276930 /ug=Ssc.2886 /len=2512"	-	-	-	gi|311276931|ref|XP_003135414.1|/0/PREDICTED: u3 small nucleolar RNA-associated protein 14 homolog A-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S20939541	4	1.15	3	0.86	5	1.5	"AJ651264 CSEQRAN19 Sus scrofa cDNA clone C0003277_N08, mRNA sequence /clone=C0003277_N08 /gb=AJ651264 /gi=49333709 /ug=Ssc.85696 /len=510"	-	-	-	gi|166233530|sp|Q6NS59.2|F135A_MOUSE/1.47156e-69/RecName: Full=Protein FAM135A
gnl|UG|Ssc#S40419603	39	11.23	79	22.58	26	7.81	"rpty624b_l24.y1 pty Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW514210 /gi=183132152 /ug=Ssc.92312 /len=245"	-	-	-	-
gnl|UG|Ssc#S17515720	26	7.49	7	2	5	1.5	"BX670289 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0035.b.01 5prim, mRNA sequence /clone=scac0035.b.01 /clone_end=5' /gb=BX670289 /gi=90238697 /ug=Ssc.94149 /len=856"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0004175//endopeptidase activity;GO:0005488//binding	GO:0006508//proteolysis	gi|296199912|ref|XP_002747415.1|/2.71066e-64/PREDICTED: minor histocompatibility antigen H13 isoform 2 [Callithrix jacchus]
gnl|UG|Ssc#S35169092	2	0.58	5	1.43	2	0.6	"Sus scrofa mRNA, clone:OVRM10118D11, expressed in ovary /gb=AK235821 /gi=115550747 /ug=Ssc.50299 /len=2527"	GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	"GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0000166//nucleotide binding;GO:0016675;GO:0050662//coenzyme binding;GO:0016653//oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor"	GO:0010893//positive regulation of steroid biosynthetic process;GO:0002062//chondrocyte differentiation;GO:0032768;GO:0008203//cholesterol metabolic process;GO:0006475//internal protein amino acid acetylation;GO:0006730//one-carbon metabolic process;GO:0006631//fatty acid metabolic process;GO:0006915//apoptosis;GO:0090345;GO:0008589//regulation of smoothened signaling pathway;GO:0044270;GO:0032870//cellular response to hormone stimulus;GO:0042126//nitrate metabolic process;GO:0003419//growth plate cartilage chondrocyte proliferation;GO:0010466//negative regulation of peptidase activity	gi|194018678|ref|NP_001123431.1|/0/NADPH--cytochrome P450 reductase [Sus scrofa]
gnl|UG|Ssc#S35173609	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:UTR010076C05, expressed in uterus /gb=AK240464 /gi=115546226 /ug=Ssc.56875 /len=1346"	GO:0043292//contractile fiber;GO:0032432//actin filament bundle	GO:0005198//structural molecule activity;GO:0032559	GO:0051707//response to other organism;GO:0007015//actin filament organization;GO:0048747//muscle fiber development;GO:0006939//smooth muscle contraction;GO:0008015//blood circulation	"gi|4501889|ref|NP_001606.1|/0/actin, gamma-enteric smooth muscle isoform 1 precursor [Homo sapiens]"
gnl|UG|Ssc#S58306772	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa FCH and double SH3 domains 2 (FCHSD2), mRNA /cds=p(1,2334) /gb=XM_003129625 /gi=311263436 /ug=Ssc.29242 /len=4335"	-	GO:0005488//binding	-	gi|311263437|ref|XP_003129673.1|/0/PREDICTED: FCH and double SH3 domains protein 2-like [Sus scrofa]
gnl|UG|Ssc#S49953835	18	5.18	19	5.43	18	5.41	"Sus scrofa phosphatase and tensin-like protein (PTEN) mRNA, complete cds /cds=p(239,1450) /gb=FJ436380 /gi=217314874 /ug=Ssc.7652 /len=1757"	GO:0044459//plasma membrane part;GO:0016604//nuclear body;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0005624//membrane fraction	GO:0046872//metal ion binding;GO:0034593;GO:0019904//protein domain specific binding;GO:0034594//phosphatidylinositol trisphosphate phosphatase activity;GO:0004721//phosphoprotein phosphatase activity;GO:0070851//growth factor receptor binding	GO:0001932//regulation of protein phosphorylation;GO:0016055//Wnt receptor signaling pathway;GO:0048017//inositol lipid-mediated signaling;GO:0048167//regulation of synaptic plasticity;GO:0006470//protein dephosphorylation;GO:0003006//developmental process involved in reproduction;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050851//antigen receptor-mediated signaling pathway;GO:0031175//neuron projection development;GO:0014706//striated muscle tissue development;GO:0045299//otolith mineralization;GO:0051726//regulation of cell cycle;GO:0031667//response to nutrient levels;GO:0001783//B cell apoptosis;GO:0007611//learning or memory;GO:0016477//cell migration;GO:0042981//regulation of apoptosis;GO:0012502//induction of programmed cell death;GO:0046488//phosphatidylinositol metabolic process;GO:0045806//negative regulation of endocytosis;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0043627//response to estrogen stimulus;GO:0046838//phosphorylated carbohydrate dephosphorylation;GO:0010038//response to metal ion;GO:0008285//negative regulation of cell proliferation;GO:0010741;GO:0009746;GO:0001953//negative regulation of cell-matrix adhesion;GO:0031647//regulation of protein stability;GO:0001944//vasculature development;GO:0043388//positive regulation of DNA binding	"gi|219521958|ref|NP_001137168.1|/0/phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Sus scrofa]"
gnl|UG|Ssc#S58302871	139	40.02	50	14.29	146	43.88	"PREDICTED: Sus scrofa nck-associated protein 1-like (LOC100522710), mRNA /cds=p(1,3387) /gb=XM_003133523 /gi=311272749 /ug=Ssc.43754 /len=4196"	GO:0031224//intrinsic to membrane;GO:0030027//lamellipodium	GO:0005488//binding	"GO:0012501//programmed cell death;GO:0014020;GO:0008595//anterior/posterior axis specification, embryo;GO:0008105//asymmetric protein localization;GO:0001667//ameboidal cell migration;GO:0030036//actin cytoskeleton organization;GO:0048562//embryonic organ morphogenesis;GO:0031647//regulation of protein stability;GO:0010171//body morphogenesis;GO:0007509//mesoderm migration involved in gastrulation;GO:0030031//cell projection assembly"	gi|311272750|ref|XP_003133571.1|/0/PREDICTED: nck-associated protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46879319	18	5.18	2	0.57	22	6.61	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase NRDP1-like (LOC100157936), mRNA /cds=p(400,1353) /gb=XM_001927685 /gi=311255669 /ug=Ssc.9703 /len=2739"	-	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0012502//induction of programmed cell death;GO:0016567//protein ubiquitination	gi|114051760|ref|NP_001039990.1|/0/E3 ubiquitin-protein ligase NRDP1 [Bos taurus]
gnl|UG|Ssc#S43509613	2	0.58	0	0	0	0	"Sus scrofa gamma-aminobutyric acid (GABA) B receptor, 1 (GABBR1), mRNA /cds=p(1,1734) /gb=NM_001123114 /gi=178057309 /ug=Ssc.70758 /len=1734"	GO:0044297//cell body;GO:0016021//integral to membrane;GO:0032589//neuron projection membrane;GO:0030425//dendrite;GO:0031090//organelle membrane;GO:0005740//mitochondrial envelope;GO:0042598//vesicular fraction;GO:0030136//clathrin-coated vesicle	GO:0005515//protein binding;GO:0008066//glutamate receptor activity	GO:0060123//regulation of growth hormone secretion;GO:0031280;GO:0014046;GO:0014060;GO:0008283//cell proliferation;GO:0001503//ossification;GO:0006171//cAMP biosynthetic process;GO:0014070//response to organic cyclic compound;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0050804//regulation of synaptic transmission;GO:0014051//gamma-aminobutyric acid secretion	gi|178057310|ref|NP_001116586.1|/0/gamma-aminobutyric acid type B receptor subunit 1 [Sus scrofa]
gnl|UG|Ssc#S58304621	72	20.73	56	16.01	85	25.54	"PREDICTED: Sus scrofa TNF receptor-associated factor 4 (TRAF4), mRNA /cds=p(1,1407) /gb=XM_003131791 /gi=311267968 /ug=Ssc.21963 /len=1939"	GO:0043231//intracellular membrane-bounded organelle;GO:0043296//apical junction complex;GO:0043232;GO:0044444//cytoplasmic part	GO:0004871//signal transducer activity;GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0019904//protein domain specific binding;GO:0019787//small conjugating protein ligase activity;GO:0019900//kinase binding	GO:0033674//positive regulation of kinase activity;GO:0043410//positive regulation of MAPKKK cascade;GO:0032092//positive regulation of protein binding;GO:0006915//apoptosis;GO:0035295//tube development;GO:0032446//protein modification by small protein conjugation	gi|311267969|ref|XP_003131839.1|/0/PREDICTED: TNF receptor-associated factor 4-like [Sus scrofa]
gnl|UG|Ssc#S46876374	11	3.17	6	1.72	2	0.6	"PREDICTED: Sus scrofa glycosyltransferase-like domain containing 1 (GTDC1), mRNA /cds=p(1,1287) /gb=XM_001926936 /gi=311272098 /ug=Ssc.11595 /len=3555"	-	GO:0016740//transferase activity	GO:0008152//metabolic process	gi|311272099|ref|XP_001926971.2|/0/PREDICTED: glycosyltransferase-like domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S18279157	2	0.58	0	0	2	0.6	"BP435054 full-length enriched swine cDNA library, adult lung Sus scrofa cDNA clone LNG010026C02 5', mRNA sequence /clone=LNG010026C02 /clone_end=5' /gb=BP435054 /gi=40425121 /ug=Ssc.41508 /len=809"	GO:0043231//intracellular membrane-bounded organelle	"GO:0017111//nucleoside-triphosphatase activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561"	GO:0006414//translational elongation;GO:0009207	"gi|296491158|gb|DAA33231.1|/4.71135e-139/G elongation factor, mitochondrial 1 [Bos taurus]"
gnl|UG|Ssc#S58309675	5	1.44	3	0.86	2	0.6	"PREDICTED: Sus scrofa diphosphoinositol polyphosphate phosphohydrolase 2-like (LOC100519192), mRNA /cds=p(111,911) /gb=XM_003126721 /gi=311256704 /ug=Ssc.54659 /len=2687"	GO:0044424//intracellular part	GO:0043169//cation binding;GO:0016462//pyrophosphatase activity	GO:0032239;GO:0019932//second-messenger-mediated signaling;GO:0006650//glycerophospholipid metabolic process;GO:0009123	gi|311256705|ref|XP_003126769.1|/2.01956e-111/PREDICTED: diphosphoinositol polyphosphate phosphohydrolase 2-like [Sus scrofa]
gnl|UG|Ssc#S46879432	2	0.58	3	0.86	0	0	"PREDICTED: Sus scrofa cyclin-T1-like (LOC100154485), mRNA /cds=p(1,2187) /gb=XM_001928887 /gi=311255225 /ug=Ssc.94498 /len=2187"	GO:0008023//transcription elongation factor complex	GO:0003723//RNA binding;GO:0043565//sequence-specific DNA binding	"GO:0051726//regulation of cell cycle;GO:0051704;GO:0045935;GO:0006354//transcription elongation, DNA-dependent;GO:0006464//protein modification process"	gi|194037287|ref|XP_001928922.1|/0/PREDICTED: cyclin-T1-like [Sus scrofa]
gnl|UG|Ssc#S58304470	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa MLL1/MLL complex subunit C17orf49 homolog (LOC100518689), partial mRNA /cds=p(1,894) /gb=XM_003131935 /gi=311268273 /ug=Ssc.2447 /len=1153"	GO:0035097//histone methyltransferase complex;GO:0031010	GO:0003676//nucleic acid binding	GO:0006325//chromatin organization	"gi|311268274|ref|XP_003131983.1|/4.79252e-137/PREDICTED: MLL1/MLL complex subunit C17orf49 homolog, partial [Sus scrofa]"
gnl|UG|Ssc#S18354494	69	19.87	62	17.72	60	18.03	"893541 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK449935 /gi=40797149 /ug=Ssc.22025 /len=631"	-	-	-	-
gnl|UG|Ssc#S23772417	2	0.58	0	0	0	0	"1144303 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN130036 /gi=59824317 /ug=Ssc.5428 /len=859"	-	-	-	gi|301752920|ref|XP_002912303.1|/3.14681e-118/PREDICTED: copine-2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58302455	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa molybdopterin synthase catalytic subunit-like, transcript variant 1 (LOC100512870), mRNA /cds=p(266,844) /gb=XM_003133940 /gi=311273689 /ug=Ssc.27541 /len=2224"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0003824//catalytic activity	GO:0006766//vitamin metabolic process;GO:0009108//coenzyme biosynthetic process;GO:0042559//pteridine-containing compound biosynthetic process	gi|311273690|ref|XP_003133988.1|/6.42399e-92/PREDICTED: molybdopterin synthase catalytic subunit-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S39928606	50	14.4	51	14.58	28	8.41	"rcst18_g23.y1 cst Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW023671 /gi=181298987 /ug=Ssc.65914 /len=571"	-	-	-	gi|258676922|gb|ACV87314.1|/1.99582e-08/IL-23 [Sus scrofa]
gnl|UG|Ssc#S58314152	10	2.88	2	0.57	11	3.31	"PREDICTED: Sus scrofa hypothetical protein LOC100511735 (LOC100511735), mRNA /cds=p(1,2976) /gb=XM_003122257 /gi=311246671 /ug=Ssc.43984 /len=2976"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0030695//GTPase regulator activity;GO:0019904//protein domain specific binding	GO:0000165//MAPKKK cascade;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009966//regulation of signal transduction	gi|311246672|ref|XP_003122305.1|/0/PREDICTED: hypothetical protein LOC100511735 [Sus scrofa]
gnl|UG|Ssc#S55321132	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LNG010008H04, expressed in lung /gb=AK345355 /gi=288783740 /ug=Ssc.30794 /len=1636"	-	-	-	gi|148645276|gb|ABR01162.1|/8.20944e-30/endonuclease/reverse transcriptase [Sus scrofa]
gnl|UG|Ssc#S58302391	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa peptidylprolyl isomerase domain and WD repeat-containing protein 1-like (LOC100512505), mRNA /cds=p(9,1949) /gb=XM_003134007 /gi=311273818 /ug=Ssc.43793 /len=2493"	GO:0005681//spliceosomal complex	GO:0016859//cis-trans isomerase activity	GO:0000377;GO:0044267//cellular protein metabolic process	gi|311273819|ref|XP_003134055.1|/0/PREDICTED: peptidylprolyl isomerase domain and WD repeat-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35164564	247	71.11	45	12.86	216	64.91	"Sus scrofa mRNA, clone:MLN010025G01, expressed in mesenteric lymph node /gb=AK233777 /gi=115555162 /ug=Ssc.2261 /len=926"	GO:0031981//nuclear lumen;GO:0000152//nuclear ubiquitin ligase complex;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0007050//cell cycle arrest;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	gi|18777675|ref|NP_057560.8|/2.44396e-26/anaphase-promoting complex subunit 11 isoform 2 [Homo sapiens]
gnl|UG|Ssc#S19540567	0	0	2	0.57	0	0	"944076 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN156663 /gi=46171093 /ug=Ssc.24616 /len=878"	-	"GO:0016773//phosphotransferase activity, alcohol group as acceptor;GO:0032559"	GO:0019321//pentose metabolic process;GO:0016310//phosphorylation	gi|300796105|ref|NP_001178200.1|/2.7523e-133/ribokinase [Bos taurus]
gnl|UG|Ssc#S35170307	19	5.47	39	11.15	12	3.61	"Sus scrofa mRNA, clone:OVRM10092H09, expressed in ovary /gb=AK235554 /gi=115549532 /ug=Ssc.45632 /len=3312"	GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton;GO:0043005//neuron projection;GO:0044297//cell body;GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding;GO:0003779//actin binding;GO:0004518//nuclease activity;GO:0015631//tubulin binding	"GO:0012501//programmed cell death;GO:0007417//central nervous system development;GO:0048858//cell projection morphogenesis;GO:0000226//microtubule cytoskeleton organization;GO:0034643//establishment of mitochondrion localization, microtubule-mediated"	gi|311249257|ref|XP_003123544.1|/0/PREDICTED: microtubule-associated protein 1S-like [Sus scrofa]
gnl|UG|Ssc#S55323824	3	0.86	0	0	2	0.6	"Sus scrofa mRNA, clone:AMP010061D02, expressed in alveolar macrophages /gb=AK343837 /gi=288781048 /ug=Ssc.22085 /len=2046"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|297286445|ref|XP_001092913.2|/0/PREDICTED: myoneurin isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S58313645	7	2.02	6	1.72	8	2.4	"PREDICTED: Sus scrofa probable palmitoyltransferase ZDHHC5-like (LOC100520005), mRNA /cds=p(256,2403) /gb=XM_003122713 /gi=311247757 /ug=Ssc.3084 /len=3616"	-	-	-	-
gnl|UG|Ssc#S58311363	12	3.45	13	3.72	4	1.2	"PREDICTED: Sus scrofa zinc finger protein 638 (ZNF638), mRNA /cds=p(225,2609) /gb=XM_003125036 /gi=311252415 /ug=Ssc.26840 /len=3016"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0043566//structure-specific DNA binding	GO:0006396//RNA processing	gi|311252416|ref|XP_003125084.1|/0/PREDICTED: zinc finger protein 638-like [Sus scrofa]
gnl|UG|Ssc#S55327228	2	0.58	3	0.86	3	0.9	"Sus scrofa mRNA, clone:OVR010029D11, expressed in ovary /gb=AK347421 /gi=288576828 /ug=Ssc.4747 /len=1683"	GO:0043231//intracellular membrane-bounded organelle	GO:0060089;GO:0032403//protein complex binding;GO:0043394//proteoglycan binding	GO:0030097//hemopoiesis;GO:0032277//negative regulation of gonadotropin secretion;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0045684//positive regulation of epidermis development;GO:0008283//cell proliferation;GO:0042476//odontogenesis;GO:0008406//gonad development;GO:0001942//hair follicle development;GO:0019953//sexual reproduction;GO:0045595//regulation of cell differentiation;GO:0032924//activin receptor signaling pathway	gi|114600368|ref|XP_517768.2|/0/PREDICTED: follistatin [Pan troglodytes]
gnl|UG|Ssc#S46879758	4	1.15	5	1.43	5	1.5	"PREDICTED: Sus scrofa peptidase inhibitor 15-like (LOC100158209), mRNA /cds=p(165,941) /gb=XM_001926809 /gi=311253712 /ug=Ssc.72654 /len=2006"	-	GO:0004857//enzyme inhibitor activity	GO:0051346//negative regulation of hydrolase activity	gi|194036614|ref|XP_001926844.1|/1.47068e-148/PREDICTED: peptidase inhibitor 15-like [Sus scrofa]
gnl|UG|Ssc#S35167730	93	26.78	45	12.86	60	18.03	"Sus scrofa mRNA, clone:THY010074E04, expressed in thymus /gb=AK239202 /gi=115552009 /ug=Ssc.83236 /len=1361"	-	-	-	-
gnl|UG|Ssc#S31117215	38	10.94	12	3.43	65	19.53	"1539221 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY421053 /gi=87222356 /ug=Ssc.74937 /len=349"	GO:0031981//nuclear lumen;GO:0015934//large ribosomal subunit	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|296232623|ref|XP_002761703.1|/1.47859e-47/PREDICTED: 60S ribosomal protein L36-like [Callithrix jacchus]
gnl|UG|Ssc#S58310400	62	17.85	29	8.29	48	14.43	"PREDICTED: Sus scrofa hsc70-interacting protein-like (LOC100517529), mRNA /cds=p(156,1265) /gb=XM_003126003 /gi=311255018 /ug=Ssc.56430 /len=3406"	GO:0032991//macromolecular complex;GO:0044444//cytoplasmic part	GO:0031072//heat shock protein binding;GO:0032558//adenyl deoxyribonucleotide binding	GO:0042026//protein refolding;GO:0051259//protein oligomerization;GO:0032269//negative regulation of cellular protein metabolic process	gi|73983235|ref|XP_853837.1|/2.07162e-148/PREDICTED: similar to heat shock 70kD protein binding protein [Canis familiaris]
gnl|UG|Ssc#S58303996	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa fibulin-2-like (LOC100515757), partial mRNA /cds=p(112,1387) /gb=XM_003132401 /gi=311269344 /ug=Ssc.28669 /len=1387"	-	-	-	"gi|311269345|ref|XP_003132449.1|/0/PREDICTED: fibulin-2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58313320	7	2.02	0	0	4	1.2	"PREDICTED: Sus scrofa lysine (K)-specific demethylase 4B (KDM4B), mRNA /cds=p(83,1636) /gb=XM_003123080 /gi=311248413 /ug=Ssc.81907 /len=2042"	GO:0043231//intracellular membrane-bounded organelle	"GO:0046914//transition metal ion binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	"GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|296485702|gb|DAA27817.1|/0/KIAA0876 protein-like [Bos taurus]
gnl|UG|Ssc#S23773981	13	3.74	11	3.14	8	2.4	"1148260 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN131600 /gi=59825881 /ug=Ssc.37751 /len=531"	-	-	-	-
gnl|UG|Ssc#S58315047	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) (SMPD2), mRNA /cds=p(146,1417) /gb=XM_003121356 /gi=311244315 /ug=Ssc.47535 /len=1814"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0044459//plasma membrane part	GO:0043169//cation binding;GO:0004620//phospholipase activity	GO:0006644//phospholipid metabolic process;GO:0035556//intracellular signal transduction;GO:0006917//induction of apoptosis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006672//ceramide metabolic process;GO:0009605//response to external stimulus	gi|194035181|ref|XP_001925325.1|/0/PREDICTED: sphingomyelin phosphodiesterase 2 [Sus scrofa]
gnl|UG|Ssc#S21551908	2	0.58	0	0	5	1.5	"UMC-p2mm4-009-g05 2mm ovarian follicle p2mm Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO943199 /gi=51309958 /ug=Ssc.86369 /len=406"	-	-	-	-
gnl|UG|Ssc#S17517147	0	0	0	0	2	0.6	"BX671716 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0033.c.22 5prim, mRNA sequence /clone=scac0033.c.22 /clone_end=5' /gb=BX671716 /gi=90226645 /ug=Ssc.54772 /len=911"	GO:0044424//intracellular part	GO:0008092//cytoskeletal protein binding	GO:0006996//organelle organization	gi|297484247|ref|XP_002694244.1|/1.07062e-117/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S58312348	13	3.74	6	1.72	9	2.7	"PREDICTED: Sus scrofa ring finger protein 14, transcript variant 2 (RNF14), mRNA /cds=p(409,1833) /gb=XM_003124008 /gi=311250395 /ug=Ssc.5933 /len=3159"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0046914//transition metal ion binding;GO:0016881//acid-amino acid ligase activity;GO:0035258//steroid hormone receptor binding	"GO:0043627//response to estrogen stimulus;GO:0032446//protein modification by small protein conjugation;GO:0006355//regulation of transcription, DNA-dependent;GO:0033143//regulation of steroid hormone receptor signaling pathway"	gi|311250396|ref|XP_003124056.1|/0/PREDICTED: e3 ubiquitin-protein ligase RNF14-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S20938199	48	13.82	65	18.58	71	21.34	"AJ649922 CSEQRAN19 Sus scrofa cDNA clone C0003273_O03, mRNA sequence /clone=C0003273_O03 /gb=AJ649922 /gi=49326767 /ug=Ssc.85542 /len=494"	GO:0048770;GO:0000790//nuclear chromatin;GO:0044439;GO:0044429//mitochondrial part	"GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;GO:0004601//peroxidase activity;GO:0042802//identical protein binding;GO:0005506//iron ion binding"	GO:0048731;GO:0042743//hydrogen peroxide metabolic process;GO:0043408//regulation of MAPKKK cascade;GO:0042348//NF-kappaB import into nucleus;GO:0019725//cellular homeostasis;GO:0048872//homeostasis of number of cells;GO:0006801//superoxide metabolic process;GO:0006950//response to stress;GO:0001909//leukocyte mediated cytotoxicity	gi|16923958|ref|NP_476455.1|/2.72657e-78/peroxiredoxin-1 [Rattus norvegicus]
gnl|UG|Ssc#S35174111	22	6.33	3	0.86	17	5.11	"Sus scrofa mRNA, clone:OVR010013H09, expressed in ovary /gb=AK234157 /gi=115545724 /ug=Ssc.8228 /len=2138"	-	-	-	gi|311256553|ref|XP_003126687.1|/0/PREDICTED: uncharacterized protein C12orf41-like [Sus scrofa]
gnl|UG|Ssc#S34520324	0	0	2	0.57	0	0	"DB790632 full-length enriched swine cDNA library, adult immature dendritic cell Sus scrofa cDNA clone DCI010001B12 5', mRNA sequence /clone=DCI010001B12 /clone_end=5' /gb=DB790632 /gi=112754327 /ug=Ssc.89840 /len=692"	GO:0044429//mitochondrial part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|301763160|ref|XP_002917005.1|/5.87627e-84/PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S55319281	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10169B11, expressed in liver /gb=AK346411 /gi=288785603 /ug=Ssc.44780 /len=2651"	GO:0031224//intrinsic to membrane;GO:0044424//intracellular part;GO:0005624//membrane fraction;GO:0031253//cell projection membrane	GO:0004888//transmembrane receptor activity;GO:0042802//identical protein binding;GO:0019904//protein domain specific binding;GO:0046983//protein dimerization activity	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0030278//regulation of ossification;GO:0001932//regulation of protein phosphorylation;GO:0045137//development of primary sexual characteristics;GO:0035411//catenin import into nucleus;GO:0007187//G-protein signaling, coupled to cyclic nucleotide second messenger;GO:0032870//cellular response to hormone stimulus;GO:0030509//BMP signaling pathway;GO:0060411//cardiac septum morphogenesis;GO:0070848//response to growth factor stimulus;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0060070//canonical Wnt receptor signaling pathway;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0007267//cell-cell signaling;GO:0007417//central nervous system development;GO:0033280//response to vitamin D;GO:0060071//Wnt receptor signaling pathway, planar cell polarity pathway;GO:0043388//positive regulation of DNA binding"	gi|155371827|ref|NP_001094518.1|/0/frizzled-1 [Bos taurus]
gnl|UG|Ssc#S58304863	8	2.3	0	0	5	1.5	"PREDICTED: Sus scrofa secernin-2-like (LOC100519333), mRNA /cds=p(27,1346) /gb=XM_003131533 /gi=311267461 /ug=Ssc.1791 /len=1498"	-	GO:0008238//exopeptidase activity	GO:0019538//protein metabolic process	gi|311267462|ref|XP_003131581.1|/0/PREDICTED: secernin-2-like [Sus scrofa]
gnl|UG|Ssc#S35164537	5	1.44	7	2	8	2.4	"Sus scrofa mRNA, clone:MLN010032H02, expressed in mesenteric lymph node /gb=AK233804 /gi=115555189 /ug=Ssc.50008 /len=955"	-	-	-	gi|311268510|ref|XP_003132087.1|/5.96282e-15/PREDICTED: GRB2-related adapter protein-like [Sus scrofa]
gnl|UG|Ssc#S58301374	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa renin receptor-like (LOC100514935), mRNA /cds=p(127,1182) /gb=XM_003135022 /gi=311276151 /ug=Ssc.31570 /len=2101"	GO:0031224//intrinsic to membrane;GO:0009986//cell surface	GO:0005488//binding;GO:0004871//signal transducer activity	GO:0032905;GO:0002002;GO:0010627//regulation of intracellular protein kinase cascade	gi|311276152|ref|XP_003135070.1|/1.34567e-176/PREDICTED: renin receptor-like [Sus scrofa]
gnl|UG|Ssc#S58301222	3	0.86	0	0	3	0.9	"PREDICTED: Sus scrofa forkhead box O4 (FOXO4), mRNA /cds=p(327,1865) /gb=XM_003135172 /gi=311276472 /ug=Ssc.32614 /len=2556"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0003702//RNA polymerase II transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0043566//structure-specific DNA binding;GO:0019900//kinase binding;GO:0016564//transcription repressor activity	GO:0031572//G2/M transition DNA damage checkpoint;GO:0001525//angiogenesis;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0048017//inositol lipid-mediated signaling;GO:0051148//negative regulation of muscle cell differentiation;GO:0008283//cell proliferation;GO:0048513//organ development;GO:0051318//G1 phase;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|311276473|ref|XP_003135220.1|/0/PREDICTED: forkhead box protein O4 [Sus scrofa]
gnl|UG|Ssc#S55327114	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVR010052C10, expressed in ovary /gb=AK347537 /gi=288576942 /ug=Ssc.44798 /len=3488"	GO:0005759//mitochondrial matrix	GO:0003678//DNA helicase activity;GO:0019899//enzyme binding;GO:0032559;GO:0043566//structure-specific DNA binding	"GO:0051259//protein oligomerization;GO:0006261//DNA-dependent DNA replication;GO:0006351//transcription, DNA-dependent"	"gi|148540314|ref|NP_001091933.1|/0/twinkle protein, mitochondrial [Bos taurus]"
gnl|UG|Ssc#S58302855	0	0	0	0	0	0	"PREDICTED: Sus scrofa PMS1 protein homolog 1-like (LOC100513383), mRNA /cds=p(15,2786) /gb=XM_003133539 /gi=311272788 /ug=Ssc.7919 /len=3419"	GO:0032300//mismatch repair complex;GO:0043231//intracellular membrane-bounded organelle	GO:0017111//nucleoside-triphosphatase activity;GO:0003690//double-stranded DNA binding;GO:0032559	GO:0006310//DNA recombination;GO:0006281//DNA repair;GO:0009207;GO:0042221//response to chemical stimulus	gi|311272789|ref|XP_003133587.1|/0/PREDICTED: LOW QUALITY PROTEIN: PMS1 protein homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S35171481	2	0.58	0	0	4	1.2	"Sus scrofa mRNA, clone:LNG010016G11, expressed in lung /gb=AK231731 /gi=115548358 /ug=Ssc.55553 /len=1627"	GO:0043234//protein complex;GO:0044424//intracellular part	GO:0003676//nucleic acid binding;GO:0003712//transcription cofactor activity	"GO:0006351//transcription, DNA-dependent"	gi|115496826|ref|NP_001069509.1|/0/activating signal cointegrator 1 complex subunit 1 [Bos taurus]
gnl|UG|Ssc#S46879644	2	0.58	0	0	9	2.7	"PREDICTED: Sus scrofa UDP-N-acteylglucosamine pyrophosphorylase 1 (UAP1), mRNA /cds=p(307,1872) /gb=XM_001928643 /gi=311253935 /ug=Ssc.16886 /len=2357"	-	-	-	-
gnl|UG|Ssc#S35170443	7	2.02	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10079D12, expressed in ovary /gb=AK235418 /gi=115549396 /ug=Ssc.43742 /len=1947"	GO:0043231//intracellular membrane-bounded organelle;GO:0032991//macromolecular complex	GO:0003723//RNA binding	GO:0008380//RNA splicing	gi|116004021|ref|NP_001070368.1|/0/heterogeneous nuclear ribonucleoprotein L-like [Bos taurus]
gnl|UG|Ssc#S46875803	12	3.45	0	0	11	3.31	"PREDICTED: Sus scrofa pyruvate dehydrogenase kinase, isozyme 3 (PDK3), mRNA /cds=p(800,2047) /gb=XM_001927439 /gi=311276057 /ug=Ssc.19740 /len=2705"	GO:0044429//mitochondrial part	GO:0004673//protein histidine kinase activity;GO:0032559	GO:0006468//protein phosphorylation;GO:0019318//hexose metabolic process;GO:0006086//acetyl-CoA biosynthetic process from pyruvate;GO:0007165//signal transduction	"gi|194044826|ref|XP_001927474.1|/0/PREDICTED: [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S58301749	50	14.4	42	12.01	80	24.04	"PREDICTED: Sus scrofa nuclear pore complex protein Nup205-like (LOC100522961), mRNA /cds=p(1,732) /gb=XM_003134648 /gi=311275346 /ug=Ssc.37691 /len=923"	GO:0005635//nuclear envelope	GO:0005488//binding	GO:0044238//primary metabolic process;GO:0050658//RNA transport;GO:0006606//protein import into nucleus;GO:0015758//glucose transport	gi|311275347|ref|XP_003134696.1|/6.6301e-133/PREDICTED: nuclear pore complex protein Nup205-like [Sus scrofa]
gnl|UG|Ssc#S55323817	5	1.44	24	6.86	4	1.2	"Sus scrofa mRNA, clone:AMP010064D09, expressed in alveolar macrophages /gb=AK343844 /gi=288781055 /ug=Ssc.76739 /len=3193"	GO:0043231//intracellular membrane-bounded organelle	GO:0005049//nuclear export signal receptor activity;GO:0022892	GO:0012501//programmed cell death;GO:0015031//protein transport	gi|29029559|ref|NP_001307.2|/0/exportin-2 [Homo sapiens]
gnl|UG|Ssc#S46876937	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa kinesin family member 20B (KIF20B), mRNA /cds=p(65,5428) /gb=XM_001928931 /gi=194042469 /ug=Ssc.43517 /len=5631"	GO:0005815//microtubule organizing center;GO:0031981//nuclear lumen	GO:0003774//motor activity;GO:0019904//protein domain specific binding;GO:0032559	GO:0009207;GO:0007017//microtubule-based process;GO:0007067//mitosis	gi|194042470|ref|XP_001928966.1|/0/PREDICTED: kinesin-like protein KIF20B-like [Sus scrofa]
gnl|UG|Ssc#S20937434	422	121.5	657	187.8	393	118.11	"AJ649157 CSEQRAN19 Sus scrofa cDNA clone C0003271_L11, mRNA sequence /clone=C0003271_L11 /gb=AJ649157 /gi=49326002 /ug=Ssc.74070 /len=548"	GO:0030137//COPI-coated vesicle;GO:0030120//vesicle coat	GO:0005488//binding	GO:0048200	"gi|149036010|gb|EDL90676.1|/2.3729e-85/coatomer protein complex, subunit epsilon (predicted), isoform CRA_d [Rattus norvegicus]"
gnl|UG|Ssc#S46876414	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa zinc finger protein 268 (ZNF268), mRNA /cds=p(1,3570) /gb=XM_001927940 /gi=311270500 /ug=Ssc.39985 /len=4051"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|311270501|ref|XP_001927975.2|/0/PREDICTED: zinc finger protein 268 [Sus scrofa]
gnl|UG|Ssc#S58304661	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa mitochondrial Rho GTPase 1-like (LOC100523466), mRNA /cds=p(234,2618) /gb=XM_003131742 /gi=311267884 /ug=Ssc.13598 /len=2618"	GO:0031306//intrinsic to mitochondrial outer membrane	GO:0046872//metal ion binding;GO:0032561;GO:0003824//catalytic activity	"GO:0012501//programmed cell death;GO:0035556//intracellular signal transduction;GO:0034643//establishment of mitochondrion localization, microtubule-mediated;GO:0009966//regulation of signal transduction"	gi|311267885|ref|XP_003131790.1|/0/PREDICTED: mitochondrial Rho GTPase 1-like [Sus scrofa]
gnl|UG|Ssc#S58304149	15	4.32	7	2	13	3.91	"PREDICTED: Sus scrofa WD repeat domain 82 (WDR82), mRNA /cds=p(291,1232) /gb=XM_003132249 /gi=311268985 /ug=Ssc.53788 /len=1395"	GO:0044427;GO:0034708;GO:0008287//protein serine/threonine phosphatase complex;GO:0016585//chromatin remodeling complex	GO:0008092//cytoskeletal protein binding;GO:0018024//histone-lysine N-methyltransferase activity	GO:0034968//histone lysine methylation	gi|147904340|ref|NP_079498.2|/4.25974e-178/WD repeat-containing protein 82 [Homo sapiens]
gnl|UG|Ssc#S55254197	6	1.73	3	0.86	4	1.2	"FS675170 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010060A02 5', mRNA sequence /clone=KDN010060A02 /clone_end=5' /gb=FS675170 /gi=288251171 /ug=Ssc.76650 /len=899"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0005515//protein binding	GO:0006915//apoptosis;GO:0030261//chromosome condensation;GO:0002763//positive regulation of myeloid leukocyte differentiation;GO:0009207	gi|308153407|sp|Q9UKV3.2|ACINU_HUMAN/1.04222e-58/RecName: Full=Apoptotic chromatin condensation inducer in the nucleus; Short=Acinus
gnl|UG|Ssc#S58310953	5	1.44	0	0	4	1.2	"PREDICTED: Sus scrofa protein phosphatase 1 regulatory subunit 16A-like (LOC100524800), mRNA /cds=p(446,2023) /gb=XM_003125441 /gi=311253256 /ug=Ssc.49011 /len=2188"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0005488//binding	-	gi|311253257|ref|XP_003125489.1|/0/PREDICTED: protein phosphatase 1 regulatory subunit 16A-like [Sus scrofa]
gnl|UG|Ssc#S58303963	0	0	0	0	0	0	"PREDICTED: Sus scrofa coiled-coil domain-containing protein 67-like (LOC100524046), mRNA /cds=p(222,989) /gb=XM_003132434 /gi=311269421 /ug=Ssc.72695 /len=989"	GO:0005815//microtubule organizing center;GO:0005819//spindle	GO:0005488//binding	GO:0035556//intracellular signal transduction;GO:0000087//M phase of mitotic cell cycle;GO:0007051//spindle organization;GO:0006974//response to DNA damage stimulus	gi|311269422|ref|XP_003132482.1|/5.71717e-125/PREDICTED: coiled-coil domain-containing protein 67-like [Sus scrofa]
gnl|UG|Ssc#S58310620	3	0.86	2	0.57	0	0	"PREDICTED: Sus scrofa prune homolog (Drosophila) (PRUNE), mRNA /cds=p(150,1511) /gb=XM_003125773 /gi=311254358 /ug=Ssc.26298 /len=2982"	GO:0005924//cell-substrate adherens junction;GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0016462//pyrophosphatase activity	-	gi|311254359|ref|XP_003125821.1|/0/PREDICTED: protein prune homolog [Sus scrofa]
gnl|UG|Ssc#S23213295	2	0.58	0	0	0	0	"Sus scrofa clone Clu_27266.scr.msk.p1.Contig2, mRNA sequence /gb=AY609713 /gi=52351281 /ug=Ssc.5712 /len=2394"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	"GO:0016709//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;GO:0016741;GO:0005506//iron ion binding"	GO:0050810//regulation of steroid biosynthetic process;GO:0006730//one-carbon metabolic process;GO:0006695//cholesterol biosynthetic process	gi|47523914|ref|NP_999597.1|/0/lanosterol 14-alpha demethylase [Sus scrofa]
gnl|UG|Ssc#S58314322	25	7.2	18	5.15	27	8.11	"PREDICTED: Sus scrofa SOSS complex subunit C-like, transcript variant 2 (LOC100513906), mRNA /cds=p(266,580) /gb=XM_003122072 /gi=311246225 /ug=Ssc.26394 /len=3262"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0006259//DNA metabolic process;GO:0009314//response to radiation;GO:0033554//cellular response to stress	gi|6841232|gb|AAF28969.1|AF161409_1/3.13813e-45/HSPC291 [Homo sapiens]
gnl|UG|Ssc#S20937781	0	0	0	0	2	0.6	"AJ649504 CSEQRAN19 Sus scrofa cDNA clone C0003272_K18, mRNA sequence /clone=C0003272_K18 /gb=AJ649504 /gi=49326349 /ug=Ssc.85602 /len=538"	GO:0031981//nuclear lumen;GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0005072//transforming growth factor beta receptor, cytoplasmic mediator activity;GO:0019899//enzyme binding"	GO:0006941//striated muscle contraction;GO:0001649//osteoblast differentiation;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0045597//positive regulation of cell differentiation;GO:0003006//developmental process involved in reproduction;GO:0014070//response to organic cyclic compound;GO:0009790//embryo development;GO:0030099//myeloid cell differentiation;GO:0006464//protein modification process;GO:0035295//tube development	gi|11067423|ref|NP_067724.1|/2.75802e-83/mothers against decapentaplegic homolog 5 [Rattus norvegicus]
gnl|UG|Ssc#S58311179	140	40.31	132	37.73	378	113.6	"PREDICTED: Sus scrofa atlastin-2-like (LOC100521264), partial mRNA /cds=p(1,1637) /gb=XM_003125223 /gi=311252792 /ug=Ssc.2396 /len=3612"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0005515//protein binding	GO:0006996//organelle organization;GO:0051259//protein oligomerization;GO:0009207;GO:0048193//Golgi vesicle transport	"gi|311252793|ref|XP_003125271.1|/0/PREDICTED: atlastin-2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S46879713	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa protein FAM110B-like (LOC100156516), mRNA /cds=p(545,1660) /gb=XM_001925806 /gi=311253809 /ug=Ssc.22699 /len=2492"	GO:0005856//cytoskeleton;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|194036708|ref|XP_001925841.1|/3.67905e-168/PREDICTED: protein FAM110B-like [Sus scrofa]
gnl|UG|Ssc#S55235547	0	0	0	0	3	0.9	"FS647681 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10096G09 5', mRNA sequence /clone=BFLT10096G09 /clone_end=5' /gb=FS647681 /gi=288229538 /ug=Ssc.29566 /len=823"	GO:0031224//intrinsic to membrane;GO:0031965//nuclear membrane;GO:0030016//myofibril;GO:0031981//nuclear lumen;GO:0034992//microtubule organizing center attachment site	GO:0005515//protein binding	GO:0007010//cytoskeleton organization;GO:0043578;GO:0030154//cell differentiation;GO:0051647//nucleus localization	"gi|297467738|ref|XP_002705285.1|/3.333e-29/PREDICTED: spectrin repeat containing, nuclear envelope 1, partial [Bos taurus]"
gnl|UG|Ssc#S35174208	14	4.03	23	6.57	42	12.62	"Sus scrofa mRNA, clone:AMP010034G12, expressed in alveolar macrophage /gb=AK230742 /gi=115545627 /ug=Ssc.51900 /len=2910"	GO:0031981//nuclear lumen	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0003724//RNA helicase activity;GO:0032559"	GO:0044260;GO:0009207	gi|311261495|ref|XP_003128746.1|/0/PREDICTED: ATP-dependent RNA helicase DDX24-like [Sus scrofa]
gnl|UG|Ssc#S55324687	4	1.15	0	0	3	0.9	"Sus scrofa mRNA, clone:ADR010051H03, expressed in adrenal gland /gb=AK343369 /gi=288780185 /ug=Ssc.20033 /len=2200"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|190360647|ref|NP_001121927.1|/5.93683e-82/mighty [Sus scrofa]
gnl|UG|Ssc#S58312046	4	1.15	6	1.72	0	0	"PREDICTED: Sus scrofa zinc finger, CW type with PWWP domain 1 (ZCWPW1), mRNA /cds=p(170,2125) /gb=XM_003124351 /gi=311251012 /ug=Ssc.44250 /len=2300"	-	GO:0046872//metal ion binding	-	gi|311251013|ref|XP_003124399.1|/0/PREDICTED: zinc finger CW-type PWWP domain protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58314236	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa protein phosphatase 6, catalytic subunit, transcript variant 2 (PPP6C), mRNA /cds=p(1,1053) /gb=XM_003122160 /gi=311246453 /ug=Ssc.79723 /len=2918"	-	-	-	-
gnl|UG|Ssc#S35173376	99	28.5	182	52.02	151	45.38	"Sus scrofa mRNA, clone:AMP010074B05, expressed in alveolar macrophage /gb=AK230978 /gi=115546459 /ug=Ssc.7358 /len=2483"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0016251//general RNA polymerase II transcription factor activity	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|73968699|ref|XP_531676.2|/0/PREDICTED: similar to CCR4-NOT transcription complex subunit 2 (CCR4-associated factor 2) isoform 2 [Canis familiaris]
gnl|UG|Ssc#S58310841	8	2.3	2	0.57	2	0.6	"PREDICTED: Sus scrofa integrator complex subunit 8 (INTS8), mRNA /cds=p(1,2988) /gb=XM_003125559 /gi=311253603 /ug=Ssc.65937 /len=3072"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0005488//binding	GO:0016073	gi|311253604|ref|XP_003125607.1|/0/PREDICTED: integrator complex subunit 8-like [Sus scrofa]
gnl|UG|Ssc#S55327518	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:MLTL10022D11, expressed in longissimus /gb=AK347131 /gi=288576536 /ug=Ssc.4303 /len=1453"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0009967//positive regulation of signal transduction;GO:0006412//translation;GO:0006915//apoptosis;GO:0008283//cell proliferation	gi|311259701|ref|XP_003128219.1|/4.33715e-88/PREDICTED: eukaryotic translation elongation factor 1 epsilon-1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S26726127	4	1.15	3	0.86	6	1.8	"AJ962211 KN404_2 Sus scrofa cDNA clone C0007750i09 3', mRNA sequence /clone=C0007750i09 /clone_end=3' /gb=AJ962211 /gi=74379027 /ug=Ssc.35549 /len=614"	-	-	-	-
gnl|UG|Ssc#S58304419	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa myosin (LOC396903), partial mRNA /cds=p(1,5586) /gb=XM_003131979 /gi=311268378 /ug=Ssc.1876 /len=7085"	GO:0030427//site of polarized growth;GO:0016020//membrane;GO:0032432//actin filament bundle;GO:0015630//microtubule cytoskeleton;GO:0044297//cell body;GO:0032155;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0045202//synapse	"GO:0003779//actin binding;GO:0032559;GO:0003774//motor activity;GO:0042623//ATPase activity, coupled"	GO:0065008;GO:0007009//plasma membrane organization;GO:0040023//establishment of nucleus localization;GO:0006929//substrate-dependent cell migration;GO:0030239//myofibril assembly;GO:0043009//chordate embryonic development;GO:0021591//ventricular system development;GO:0016192//vesicle-mediated transport;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0030030//cell projection organization;GO:0006935//chemotaxis;GO:0021695//cerebellar cortex development;GO:0033205//cell cycle cytokinesis;GO:0021537//telencephalon development;GO:0055013//cardiac muscle cell development;GO:0050905//neuromuscular process	"gi|311268379|ref|XP_003132027.1|/0/PREDICTED: myosin-10, partial [Sus scrofa]"
gnl|UG|Ssc#S58313521	147	42.32	89	25.44	78	23.44	"PREDICTED: Sus scrofa caprin-1-like (LOC100512646), mRNA /cds=p(1,2769) /gb=XM_003122882 /gi=311248006 /ug=Ssc.53792 /len=6154"	GO:0043005//neuron projection;GO:0016021//integral to membrane;GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding	GO:0006412//translation;GO:0048869;GO:0031346//positive regulation of cell projection organization	gi|311248007|ref|XP_003122930.1|/0/PREDICTED: caprin-1-like [Sus scrofa]
gnl|UG|Ssc#S58309305	11	3.17	8	2.29	10	3.01	"PREDICTED: Sus scrofa zinc finger protein 793-like (LOC100511696), mRNA /cds=p(1,1596) /gb=XM_003127094 /gi=311257478 /ug=Ssc.31892 /len=1952"	-	-	-	gi|311257479|ref|XP_003127142.1|/0/PREDICTED: zinc finger protein 793-like [Sus scrofa]
gnl|UG|Ssc#S46877198	76	21.88	374	106.91	30	9.02	"PREDICTED: Sus scrofa CUE domain-containing protein 2-like (LOC100151785), mRNA /cds=p(11,874) /gb=XM_001928812 /gi=194041932 /ug=Ssc.18285 /len=1058"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|194041933|ref|XP_001928847.1|/1.76526e-151/PREDICTED: CUE domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35172432	2	0.58	6	1.72	0	0	"Sus scrofa mRNA, clone:SPL010096H12, expressed in spleen /gb=AK237784 /gi=115547403 /ug=Ssc.84407 /len=2604"	GO:0043231//intracellular membrane-bounded organelle	GO:0005099//Ras GTPase activator activity	GO:0032313//regulation of Rab GTPase activity;GO:0008104//protein localization	"gi|194209232|ref|XP_001498806.2|/0/PREDICTED: TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 [Equus caballus]"
gnl|UG|Ssc#S58313685	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa deltex homolog 4 (Drosophila) (DTX4), mRNA /cds=p(1,1860) /gb=XM_003122698 /gi=311247676 /ug=Ssc.95775 /len=1860"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0046914//transition metal ion binding;GO:0019899//enzyme binding;GO:0005102//receptor binding	"GO:0045596//negative regulation of cell differentiation;GO:0007219//Notch signaling pathway;GO:0006351//transcription, DNA-dependent;GO:0045580//regulation of T cell differentiation"	gi|311247677|ref|XP_003122746.1|/0/PREDICTED: protein deltex-4-like [Sus scrofa]
gnl|UG|Ssc#S35170330	0	0	2	0.57	2	0.6	"Sus scrofa mRNA, clone:OVRM10091A08, expressed in ovary /gb=AK235531 /gi=115549509 /ug=Ssc.55598 /len=1923"	GO:0012505//endomembrane system;GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0048193//Golgi vesicle transport;GO:0043623//cellular protein complex assembly;GO:0006996//organelle organization	gi|149699339|ref|XP_001500900.1|/0/PREDICTED: similar to component of oligomeric golgi complex 4 isoform 2 [Equus caballus]
gnl|UG|Ssc#S35172681	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:ITT010017A10, expressed in intestine /gb=AK231209 /gi=115547154 /ug=Ssc.50076 /len=2368"	GO:0016020//membrane	-	-	"gi|297632408|ref|NP_001172088.1|/4.58364e-120/solute carrier family 35, member C2 [Sus scrofa]"
gnl|UG|Ssc#S58301318	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa voltage-dependent L-type calcium channel subunit alpha-1F-like (LOC100514745), mRNA /cds=p(1,5337) /gb=XM_003135093 /gi=311276266 /ug=Ssc.95849 /len=5337"	GO:0034704//calcium channel complex;GO:0043025//neuronal cell body	GO:0005262//calcium channel activity;GO:0005488//binding	GO:0048812//neuron projection morphogenesis;GO:0006816//calcium ion transport;GO:0050953//sensory perception of light stimulus;GO:0032412;GO:0009584//detection of visible light;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0006935//chemotaxis;GO:0006875//cellular metal ion homeostasis	gi|311276267|ref|XP_003135141.1|/0/PREDICTED: voltage-dependent L-type calcium channel subunit alpha-1F-like [Sus scrofa]
gnl|UG|Ssc#S46880186	3	0.86	2	0.57	4	1.2	"PREDICTED: Sus scrofa rho GTPase-activating protein 29-like (LOC100152734), mRNA /cds=p(1,3783) /gb=XM_001926997 /gi=311254763 /ug=Ssc.28784 /len=5023"	GO:0044444//cytoplasmic part	GO:0005099//Ras GTPase activator activity;GO:0043169//cation binding	GO:0007265//Ras protein signal transduction;GO:0043087//regulation of GTPase activity;GO:0009966//regulation of signal transduction	gi|194035723|ref|XP_001927032.1|/0/PREDICTED: rho GTPase-activating protein 29-like [Sus scrofa]
gnl|UG|Ssc#S55322630	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:DCI010057D05, expressed in dendritic cells (immature) /gb=AK344453 /gi=288782242 /ug=Ssc.89894 /len=2268"	GO:0000267//cell fraction;GO:0031966//mitochondrial membrane	GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0019901//protein kinase binding;GO:0046983//protein dimerization activity;GO:0031267//small GTPase binding;GO:0032559;GO:0043169//cation binding	GO:0001934//positive regulation of protein phosphorylation;GO:0007599//hemostasis;GO:0007267//cell-cell signaling;GO:0012501//programmed cell death;GO:0008283//cell proliferation;GO:0048513//organ development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006996//organelle organization;GO:0007264//small GTPase mediated signal transduction;GO:0006935//chemotaxis;GO:0006950//response to stress;GO:0001775//cell activation;GO:0000165//MAPKKK cascade	gi|149728262|ref|XP_001492290.1|/7.13358e-155/PREDICTED: similar to RAF proto-oncogene serine/threonine-protein kinase (Raf-1) (C-RAF) (cRaf) [Equus caballus]
gnl|UG|Ssc#S35170168	24	6.91	9	2.57	23	6.91	"Sus scrofa mRNA, clone:LNG010057C02, expressed in lung /gb=AK231950 /gi=115549671 /ug=Ssc.78935 /len=2324"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0048513//organ development	gi|194208926|ref|XP_001488462.2|/0/PREDICTED: similar to transcription factor 25 (basic helix-loop-helix) [Equus caballus]
gnl|UG|Ssc#S35173269	7	2.02	0	0	6	1.8	"Sus scrofa mRNA, clone:OVR010056A10, expressed in ovary /gb=AK234404 /gi=115546566 /ug=Ssc.36025 /len=1474"	GO:0043231//intracellular membrane-bounded organelle	"GO:0042802//identical protein binding;GO:0046872//metal ion binding;GO:0003676//nucleic acid binding;GO:0016891//endoribonuclease activity, producing 5'-phosphomonoesters"	GO:0006261//DNA-dependent DNA replication;GO:0016070//RNA metabolic process	gi|114050737|ref|NP_001039970.1|/1.55521e-125/ribonuclease H1 [Bos taurus]
gnl|UG|Ssc#S50196451	0	0	0	0	0	0	"susfleck_FC_N_30_C01 SUSFLECK Fat Cell Normalized Sus scrofa cDNA clone 30_C01, mRNA sequence /clone=30_C01 /gb=FD628287 /gi=221004860 /ug=Ssc.73719 /len=773"	GO:0016021//integral to membrane;GO:0005626//insoluble fraction	GO:0005488//binding;GO:0015175//neutral amino acid transmembrane transporter activity;GO:0005283//sodium:amino acid symporter activity;GO:0005326//neurotransmitter transporter activity	GO:0015804//neutral amino acid transport	"gi|194207549|ref|XP_001915987.1|/1.38731e-135/PREDICTED: solute carrier family 6 (neurotransmitter transporter, glycine), member 9 [Equus caballus]"
gnl|UG|Ssc#S58310488	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa cell division cycle 7-related protein kinase-like (LOC100520671), mRNA /cds=p(1,1731) /gb=XM_003125912 /gi=311254800 /ug=Ssc.24917 /len=1731"	GO:0031981//nuclear lumen	GO:0043169//cation binding;GO:0004672//protein kinase activity;GO:0032559	GO:0007050//cell cycle arrest;GO:0010564//regulation of cell cycle process;GO:0006259//DNA metabolic process;GO:0006796//phosphate metabolic process;GO:0008283//cell proliferation;GO:0006464//protein modification process	gi|311254801|ref|XP_003125960.1|/0/PREDICTED: LOW QUALITY PROTEIN: cell division cycle 7-related protein kinase-like [Sus scrofa]
gnl|UG|Ssc#S35169065	5	1.44	9	2.57	10	3.01	"Sus scrofa mRNA, clone:OVRM10120D03, expressed in ovary /gb=AK235849 /gi=115550774 /ug=Ssc.2663 /len=1248"	-	GO:0005488//binding	-	gi|297266331|ref|XP_001109793.2|/1.85489e-113/PREDICTED: INO80 complex subunit B-like isoform 4 [Macaca mulatta]
gnl|UG|Ssc#S35171810	42	12.09	34	9.72	35	10.52	"Sus scrofa mRNA, clone:TCH010027E12, expressed in trachea /gb=AK238009 /gi=115548025 /ug=Ssc.72067 /len=1294"	-	-	-	-
gnl|UG|Ssc#S58312098	24	6.91	6	1.72	4	1.2	"PREDICTED: Sus scrofa transformation/transcription domain-associated protein (TRRAP), mRNA /cds=p(164,11653) /gb=XM_003124317 /gi=311250907 /ug=Ssc.4749 /len=12348"	GO:0070461//SAGA-type complex;GO:0005667//transcription factor complex;GO:0043189//H4/H2A histone acetyltransferase complex	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0005488//binding;GO:0003712//transcription cofactor activity"	GO:0000075//cell cycle checkpoint;GO:0016573//histone acetylation	gi|311250908|ref|XP_003124365.1|/0/PREDICTED: transformation/transcription domain-associated protein-like [Sus scrofa]
gnl|UG|Ssc#S58303097	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa u3 small nucleolar ribonucleoprotein protein IMP4-like (LOC100522523), partial mRNA /cds=p(1,764) /gb=XM_003133307 /gi=311272211 /ug=Ssc.54352 /len=1457"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen	"GO:0016876//ligase activity, forming aminoacyl-tRNA and related compounds;GO:0032559"	GO:0042254//ribosome biogenesis;GO:0010467//gene expression	"gi|311272212|ref|XP_003133355.1|/5.9715e-146/PREDICTED: u3 small nucleolar ribonucleoprotein protein IMP4-like, partial [Sus scrofa]"
gnl|UG|Ssc#S35170990	10	2.88	16	4.57	6	1.8	"Sus scrofa mRNA, clone:OVRM10062B03, expressed in ovary /gb=AK235252 /gi=115548849 /ug=Ssc.45266 /len=1896"	GO:0000314//organellar small ribosomal subunit;GO:0043231//intracellular membrane-bounded organelle	-	GO:0006518//peptide metabolic process;GO:0006974//response to DNA damage stimulus	"gi|311255997|ref|XP_003126457.1|/6.46046e-90/PREDICTED: 28S ribosomal protein S35, mitochondrial-like isoform 2 [Sus scrofa]"
gnl|UG|Ssc#S46877273	45	12.96	27	7.72	26	7.81	"PREDICTED: Sus scrofa tolloid-like 2 (TLL2), mRNA /cds=p(1,3063) /gb=XM_001928475 /gi=194041778 /ug=Ssc.80969 /len=3063"	-	GO:0046914//transition metal ion binding;GO:0004175//endopeptidase activity	GO:0032501//multicellular organismal process;GO:0019538//protein metabolic process;GO:0048869	gi|194041779|ref|XP_001928510.1|/0/PREDICTED: tolloid-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58305657	10	2.88	0	0	6	1.8	"PREDICTED: Sus scrofa heat shock 70 kDa protein 14-like (LOC100510924), mRNA /cds=p(97,1626) /gb=XM_003130738 /gi=311265718 /ug=Ssc.48464 /len=1879"	GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0032559	GO:0006458//'de novo' protein folding	gi|311265719|ref|XP_003130786.1|/0/PREDICTED: heat shock 70 kDa protein 14-like [Sus scrofa]
gnl|UG|Ssc#S23698073	0	0	2	0.57	0	0	"1106744 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN109176 /gi=59785931 /ug=Ssc.45038 /len=219"	-	-	-	-
gnl|UG|Ssc#S29457976	21	6.05	110	31.44	24	7.21	"POSM0605004_L07R porcine skeletal muscle cDNA library (PoSM) Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DV896745 /gi=82921195 /ug=Ssc.46764 /len=445"	-	-	-	-
gnl|UG|Ssc#S26647295	64	18.43	155	44.31	91	27.35	"BW978358 full-length enriched swine cDNA library, adult intestine Sus scrofa cDNA clone ITT010026E03 5', mRNA sequence /clone=ITT010026E03 /clone_end=5' /gb=BW978358 /gi=74255198 /ug=Ssc.10096 /len=902"	GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|297281816|ref|XP_002808312.1|/2.42237e-47/PREDICTED: LOW QUALITY PROTEIN: interferon regulatory factor 2-binding protein 2-like, partial [Macaca mulatta]"
gnl|UG|Ssc#S20938955	72	20.73	192	54.88	35	10.52	"AJ650678 CSEQRAN19 Sus scrofa cDNA clone C0003276_A07, mRNA sequence /clone=C0003276_A07 /gb=AJ650678 /gi=49327523 /ug=Ssc.85574 /len=515"	GO:0005634//nucleus;GO:0032991//macromolecular complex	GO:0043565//sequence-specific DNA binding	GO:0006396//RNA processing	gi|197245939|gb|AAI69048.1|/4.01194e-86/Hnrnpl protein [Rattus norvegicus]
gnl|UG|Ssc#S35167609	12	3.45	0	0	8	2.4	"Sus scrofa mRNA, clone:THY010092H01, expressed in thymus /gb=AK239323 /gi=115552130 /ug=Ssc.7554 /len=1499"	-	-	GO:0032501//multicellular organismal process	gi|291390214|ref|XP_002711628.1|/2.49415e-46/PREDICTED: transcription factor IIB [Oryctolagus cuniculus]
gnl|UG|Ssc#S35170662	22	6.33	9	2.57	12	3.61	"Sus scrofa mRNA, clone:LNG010032F07, expressed in lung /gb=AK231853 /gi=115549177 /ug=Ssc.23982 /len=1185"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0060089;GO:0003712//transcription cofactor activity;GO:0008134//transcription factor binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0042994//cytoplasmic sequestering of transcription factor;GO:0051091//positive regulation of transcription factor activity;GO:0002224//toll-like receptor signaling pathway	gi|115497490|ref|NP_001069340.1|/1.1115e-144/NF-kappa-B inhibitor beta [Bos taurus]
gnl|UG|Ssc#S35173418	5	1.44	3	0.86	4	1.2	"Sus scrofa mRNA, clone:AMP010066F02, expressed in alveolar macrophage /gb=AK230936 /gi=115546417 /ug=Ssc.24251 /len=1813"	GO:0043232	-	-	gi|297263348|ref|XP_001088575.2|/0/PREDICTED: actin-related protein 6 isoform 1 [Macaca mulatta]
gnl|UG|Ssc#S35164744	363	104.51	125	35.73	224	67.32	"Sus scrofa mRNA, clone:UTR010038F11, expressed in uterus /gb=AK240181 /gi=115554982 /ug=Ssc.24271 /len=980"	GO:0015630//microtubule cytoskeleton;GO:0005768//endosome;GO:0005774//vacuolar membrane;GO:0031982//vesicle	GO:0005543//phospholipid binding;GO:0015631//tubulin binding	GO:0044248//cellular catabolic process;GO:0007033//vacuole organization	gi|194224339|ref|XP_001916421.1|/4.45545e-64/PREDICTED: similar to microtubule-associated protein 1 light chain 3 alpha [Equus caballus]
gnl|UG|Ssc#S46878462	4	1.15	2	0.57	2	0.6	"PREDICTED: Sus scrofa uncharacterized protein KIAA0240-like (LOC100156331), mRNA /cds=p(1,3243) /gb=XM_001928948 /gi=311260443 /ug=Ssc.65800 /len=3423"	-	-	-	gi|194039303|ref|XP_001928983.1|/0/PREDICTED: uncharacterized protein KIAA0240-like [Sus scrofa]
gnl|UG|Ssc#S58306443	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa lathosterol oxidase-like (LOC100520925), mRNA /cds=p(1,900) /gb=XM_003129944 /gi=311264105 /ug=Ssc.54790 /len=2506"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	"GO:0016717//oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;GO:0046996;GO:0046914//transition metal ion binding"	GO:0006631//fatty acid metabolic process;GO:0006695//cholesterol biosynthetic process	gi|311264106|ref|XP_003129992.1|/1.40814e-167/PREDICTED: lathosterol oxidase-like [Sus scrofa]
gnl|UG|Ssc#S31131494	4	1.15	3	0.86	19	5.71	"1571373 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY435332 /gi=87236635 /ug=Ssc.95270 /len=647"	GO:0031224//intrinsic to membrane	-	-	gi|311245626|ref|XP_003121900.1|/2.35948e-65/PREDICTED: cell cycle control protein 50B-like [Sus scrofa]
gnl|UG|Ssc#S39906342	30	8.64	24	6.86	29	8.72	"rcov09b_m4.y1 cov Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW001418 /gi=178641616 /ug=Ssc.89337 /len=454"	-	-	-	gi|300872546|gb|ADK39026.1|/3.36124e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S58304226	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa neurobeachin-like protein 2-like (LOC100517371), mRNA /cds=p(1,924) /gb=XM_003132172 /gi=311268807 /ug=Ssc.28105 /len=1027"	-	-	-	gi|311268808|ref|XP_003132220.1|/8.95934e-145/PREDICTED: neurobeachin-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S42535709	95	27.35	46	13.15	38	11.42	"Sus scrofa sirtuin 2 (SIRT2) mRNA, complete cds /cds=p(43,1218) /gb=EU357899 /gi=164653928 /ug=Ssc.6381 /len=1819"	GO:0016585//chromatin remodeling complex;GO:0015630//microtubule cytoskeleton	"GO:0032182//small conjugating protein binding;GO:0046914//transition metal ion binding;GO:0004407//histone deacetylase activity;GO:0051287//NAD binding;GO:0019899//enzyme binding;GO:0016763//transferase activity, transferring pentosyl groups"	GO:0042221//response to chemical stimulus;GO:0006476//protein deacetylation;GO:0016310//phosphorylation;GO:0006342//chromatin silencing;GO:0016202//regulation of striated muscle tissue development;GO:0000087//M phase of mitotic cell cycle;GO:0007346//regulation of mitotic cell cycle	gi|227057441|gb|ACP18880.1|/0/sirtuin 2 [Sus scrofa]
gnl|UG|Ssc#S32235123	2	0.58	0	0	4	1.2	"Sus scrofa stratifin (Sfn) mRNA, complete cds /cds=p(45,791) /gb=DQ445254 /gi=90811814 /ug=Ssc.2165 /len=1310"	GO:0043231//intracellular membrane-bounded organelle;GO:0044421//extracellular region part	GO:0030291//protein serine/threonine kinase inhibitor activity;GO:0005515//protein binding	GO:0016049//cell growth;GO:0051726//regulation of cell cycle;GO:0009913//epidermal cell differentiation;GO:0023052//signaling;GO:0008637//apoptotic mitochondrial changes;GO:0008629//induction of apoptosis by intracellular signals;GO:0010466//negative regulation of peptidase activity;GO:0033673//negative regulation of kinase activity;GO:0008283//cell proliferation	gi|113205700|ref|NP_001038029.1|/1.41962e-119/14-3-3 protein sigma [Sus scrofa]
gnl|UG|Ssc#S46877139	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa NHL repeat-containing protein 2-like (LOC100155569), mRNA /cds=p(49,2226) /gb=XM_001929008 /gi=194042052 /ug=Ssc.13584 /len=3346"	GO:0044464//cell part	-	GO:0019725//cellular homeostasis	gi|194042053|ref|XP_001929043.1|/0/PREDICTED: NHL repeat-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35167010	4	1.15	8	2.29	3	0.9	"Sus scrofa mRNA, clone:LVRM10052C12, expressed in liver /gb=AK232934 /gi=115552729 /ug=Ssc.12315 /len=2304"	-	-	-	gi|311254909|ref|XP_003125999.1|/0/PREDICTED: tetratricopeptide repeat protein 38-like [Sus scrofa]
gnl|UG|Ssc#S35166324	11	3.17	7	2	4	1.2	"Sus scrofa mRNA, clone:OVRM10208F03, expressed in ovary /gb=AK236617 /gi=115553414 /ug=Ssc.6796 /len=2614"	GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0003676//nucleic acid binding;GO:0005515//protein binding	GO:0006810//transport;GO:0007264//small GTPase mediated signal transduction;GO:0009966//regulation of signal transduction;GO:0033036	gi|1698657|gb|AAC53553.1|/8.21707e-161/ras-GTPase-activating protein SH3-domain binding protein [Mus musculus]
gnl|UG|Ssc#S58311299	97	27.93	21	6	82	24.64	"PREDICTED: Sus scrofa t-complex protein 1 subunit delta-like (LOC100521551), mRNA /cds=p(182,1801) /gb=XM_003125100 /gi=311252546 /ug=Ssc.7110 /len=2748"	GO:0043234//protein complex;GO:0048770;GO:0031981//nuclear lumen;GO:0015630//microtubule cytoskeleton	GO:0005515//protein binding;GO:0032559	GO:0051084//'de novo' posttranslational protein folding	gi|311252547|ref|XP_003125148.1|/0/PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa]
gnl|UG|Ssc#S58314280	8	2.3	13	3.72	2	0.6	"PREDICTED: Sus scrofa ribosome-recycling factor, mitochondrial-like, transcript variant 1 (LOC100515005), mRNA /cds=p(94,882) /gb=XM_003122116 /gi=311246341 /ug=Ssc.9086 /len=1709"	GO:0043231//intracellular membrane-bounded organelle	GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent;GO:0032988"	"gi|311246342|ref|XP_003122164.1|/1.52707e-135/PREDICTED: ribosome-recycling factor, mitochondrial-like isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S58301790	12	3.45	12	3.43	19	5.71	"PREDICTED: Sus scrofa v-raf murine sarcoma viral oncogene homolog B1 (BRAF), partial mRNA /cds=p(1,2163) /gb=XM_003134610 /gi=311275261 /ug=Ssc.34726 /len=2163"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0005624//membrane fraction;GO:0044444//cytoplasmic part	GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0019901//protein kinase binding;GO:0046983//protein dimerization activity;GO:0032559;GO:0043169//cation binding	GO:0009653//anatomical structure morphogenesis;GO:0001934//positive regulation of protein phosphorylation;GO:0043410//positive regulation of MAPKKK cascade;GO:0007267//cell-cell signaling;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0051259//protein oligomerization;GO:0009725//response to hormone stimulus;GO:0043066//negative regulation of apoptosis	"gi|311275262|ref|XP_003134658.1|/0/PREDICTED: serine/threonine-protein kinase B-raf-like, partial [Sus scrofa]"
gnl|UG|Ssc#S46880548	3	0.86	0	0	4	1.2	"PREDICTED: Sus scrofa CD109 molecule, transcript variant 1 (CD109), mRNA /cds=p(51,4400) /gb=XM_001927545 /gi=194034961 /ug=Ssc.32798 /len=4631"	GO:0031224//intrinsic to membrane;GO:0044421//extracellular region part	GO:0004866//endopeptidase inhibitor activity	-	gi|194034962|ref|XP_001927580.1|/0/PREDICTED: CD109 antigen isoform 1 [Sus scrofa]
gnl|UG|Ssc#S17518696	0	0	0	0	0	0	"BX673266 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0043.g.15 5prim, mRNA sequence /clone=scac0043.g.15 /clone_end=5' /gb=BX673266 /gi=90238483 /ug=Ssc.54071 /len=799"	-	-	-	-
gnl|UG|Ssc#S55303797	2	0.58	0	0	0	0	"FS679836 full-length enriched swine cDNA library, adult longissimus Sus scrofa cDNA clone MLTL10017B03 5', mRNA sequence /clone=MLTL10017B03 /clone_end=5' /gb=FS679836 /gi=288309818 /ug=Ssc.93576 /len=444"	GO:0015629//actin cytoskeleton;GO:0031674//I band;GO:0000228//nuclear chromosome	GO:0004672//protein kinase activity;GO:0042805//actinin binding;GO:0003779//actin binding;GO:0046872//metal ion binding	GO:0060415;GO:0014866//skeletal myofibril assembly;GO:0048747//muscle fiber development;GO:0006936//muscle contraction;GO:0001932//regulation of protein phosphorylation;GO:0007015//actin filament organization;GO:0010038//response to metal ion;GO:0000070//mitotic sister chromatid segregation	gi|297264432|ref|XP_002808058.1|/2.83959e-78/PREDICTED: LOW QUALITY PROTEIN: titin-like [Macaca mulatta]
gnl|UG|Ssc#S40551411	0	0	0	0	0	0	"rthg22_d6.y1 thg Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW638124 /gi=183061798 /ug=Ssc.61583 /len=709"	-	-	-	-
gnl|UG|Ssc#S55284788	5	1.44	0	0	0	0	"FS664930 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10010D04 5', mRNA sequence /clone=HTMT10010D04 /clone_end=5' /gb=FS664930 /gi=288279829 /ug=Ssc.80114 /len=810"	-	-	-	gi|73980656|ref|XP_540124.2|/9.66634e-151/PREDICTED: similar to carbamoylphosphate synthetase 2/aspartate transcarbamylase/dihydroorotase [Canis familiaris]
gnl|UG|Ssc#S58314619	23	6.62	5	1.43	7	2.1	"PREDICTED: Sus scrofa protein FAM179B-like (LOC100513707), partial mRNA /cds=p(1,1806) /gb=XM_003121785 /gi=311245442 /ug=Ssc.40133 /len=2689"	-	-	-	"gi|311245443|ref|XP_003121833.1|/0/PREDICTED: protein FAM179B-like, partial [Sus scrofa]"
gnl|UG|Ssc#S20116285	19	5.47	38	10.86	28	8.41	"Sus scrofa calpain, small subunit 1 (CAPNS1), mRNA /cds=p(91,891) /gb=NM_214318 /gi=47523693 /ug=Ssc.79705 /len=1929"	-	-	-	-
gnl|UG|Ssc#S21580847	30	8.64	121	34.59	58	17.43	"UMC-pd0fol-005-e07 D0 ovarian follicle gilt standing estrus pd0fol Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO993727 /gi=51353001 /ug=Ssc.86172 /len=395"	-	-	-	-
gnl|UG|Ssc#S35169491	12	3.45	48	13.72	2	0.6	"Sus scrofa mRNA, clone:THY010006F12, expressed in thymus /gb=AK238613 /gi=115550348 /ug=Ssc.83901 /len=2459"	-	-	-	-
gnl|UG|Ssc#S19789350	2	0.58	0	0	0	0	"Sus scrofa shas3 mRNA for hyaluronan synthase 3, complete cds /cds=p(1,1662) /gb=AB159675 /gi=47080304 /ug=Ssc.27881 /len=3995"	GO:0016021//integral to membrane	GO:0008194//UDP-glycosyltransferase activity	GO:0044238//primary metabolic process	gi|47575893|ref|NP_001001268.1|/0/hyaluronan synthase 3 [Sus scrofa]
gnl|UG|Ssc#S55323935	4	1.15	5	1.43	2	0.6	"Sus scrofa mRNA, clone:AMP010027G06, expressed in alveolar macrophages /gb=AK343726 /gi=288780937 /ug=Ssc.5648 /len=3522"	GO:0043232;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0019904//protein domain specific binding	GO:0012501//programmed cell death;GO:0007265//Ras protein signal transduction;GO:0006909//phagocytosis;GO:0007010//cytoskeleton organization;GO:0050688//regulation of defense response to virus	gi|311275616|ref|XP_003134828.1|/0/PREDICTED: engulfment and cell motility protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58310819	9	2.59	0	0	6	1.8	"PREDICTED: Sus scrofa leucine-rich repeat and coiled-coil domain-containing protein 1-like (LOC100152599), mRNA /cds=p(25,2517) /gb=XM_003125579 /gi=311253671 /ug=Ssc.47544 /len=2517"	GO:0043232;GO:0031981//nuclear lumen	-	GO:0000087//M phase of mitotic cell cycle	gi|311253672|ref|XP_003125627.1|/0/PREDICTED: leucine-rich repeat and coiled-coil domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58309053	17	4.89	8	2.29	14	4.21	"PREDICTED: Sus scrofa prostate tumor-overexpressed gene 1 protein homolog (LOC100522621), mRNA /cds=p(1,1566) /gb=XM_003127351 /gi=311257993 /ug=Ssc.18853 /len=2013"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	-	"GO:0006351//transcription, DNA-dependent"	gi|311257994|ref|XP_003127399.1|/0/PREDICTED: prostate tumor-overexpressed gene 1 protein homolog [Sus scrofa]
gnl|UG|Ssc#S58313831	2	0.58	5	1.43	0	0	"PREDICTED: Sus scrofa multiple endocrine neoplasia I (MEN1), mRNA /cds=p(1,1482) /gb=XM_003122585 /gi=311247374 /ug=Ssc.23405 /len=2306"	GO:0034399//nuclear periphery;GO:0032155;GO:0000267//cell fraction;GO:0034708;GO:0044444//cytoplasmic part;GO:0044427	GO:0000217//DNA secondary structure binding;GO:0046332//SMAD binding;GO:0016279//protein-lysine N-methyltransferase activity	GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0016571//histone methylation;GO:0006915//apoptosis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0048609//multicellular organismal reproductive process;GO:0048562//embryonic organ morphogenesis;GO:0048534;GO:0032924//activin receptor signaling pathway;GO:0043392//negative regulation of DNA binding;GO:0022402//cell cycle process;GO:0043409//negative regulation of MAPKKK cascade;GO:0006259//DNA metabolic process;GO:0045596//negative regulation of cell differentiation;GO:0010952//positive regulation of peptidase activity;GO:0009416//response to light stimulus;GO:0045597//positive regulation of cell differentiation;GO:0001649//osteoblast differentiation;GO:0010212//response to ionizing radiation;GO:0051348//negative regulation of transferase activity;GO:0007417//central nervous system development;GO:0008283//cell proliferation;GO:0033554//cellular response to stress;GO:0045926//negative regulation of growth;GO:0000079//regulation of cyclin-dependent protein kinase activity	gi|311247375|ref|XP_003122633.1|/0/PREDICTED: menin-like [Sus scrofa]
gnl|UG|Ssc#S46876930	10	2.88	12	3.43	16	4.81	"PREDICTED: Sus scrofa membrane-associated ring finger (C3HC4) 5 (MARCH5), mRNA /cds=p(326,1162) /gb=XM_001927572 /gi=311271629 /ug=Ssc.7478 /len=3963"	GO:0031224//intrinsic to membrane;GO:0031966//mitochondrial membrane	GO:0046914//transition metal ion binding;GO:0019899//enzyme binding;GO:0019787//small conjugating protein ligase activity	GO:0033365//protein localization to organelle;GO:0016567//protein ubiquitination;GO:0007568//aging;GO:0000266//mitochondrial fission	gi|301761468|ref|XP_002916158.1|/0/PREDICTED: e3 ubiquitin-protein ligase MARCH5-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46878293	5	1.44	2	0.57	2	0.6	"PREDICTED: Sus scrofa peroxisomal biogenesis factor 11A (LOC100157485), mRNA /cds=p(150,893) /gb=XM_001927639 /gi=311260718 /ug=Ssc.5471 /len=1700"	GO:0031231	-	GO:0006629//lipid metabolic process;GO:0045444//fat cell differentiation;GO:0007031//peroxisome organization;GO:0023052//signaling	gi|194039649|ref|XP_001927674.1|/7.09366e-109/PREDICTED: peroxisomal membrane protein 11A [Sus scrofa]
gnl|UG|Ssc#S58303701	150	43.19	391	111.77	187	56.2	"PREDICTED: Sus scrofa 60S ribosomal protein L24-like (LOC100521642), mRNA /cds=p(71,544) /gb=XM_003132697 /gi=311270045 /ug=Ssc.8258 /len=993"	GO:0015934//large ribosomal subunit	GO:0005198//structural molecule activity;GO:0003676//nucleic acid binding	GO:0007411//axon guidance;GO:0031016//pancreas development;GO:0006412//translation;GO:0022618//ribonucleoprotein complex assembly;GO:0019080;GO:0021545//cranial nerve development;GO:0000082//G1/S transition of mitotic cell cycle;GO:0000087//M phase of mitotic cell cycle	gi|28174943|gb|AAH02110.2|/5.66944e-56/Rpl24 protein [Mus musculus]
gnl|UG|Ssc#S18385220	15	4.32	10	2.86	15	4.51	"936433 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK465333 /gi=40836610 /ug=Ssc.58744 /len=881"	-	-	-	-
gnl|UG|Ssc#S40096590	0	0	0	0	2	0.6	"rpfco0120_j19.y1 fco Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW191497 /gi=182550049 /ug=Ssc.8180 /len=253"	-	-	-	-
gnl|UG|Ssc#S35173152	50	14.4	11	3.14	14	4.21	"Sus scrofa mRNA, clone:OVR010075E05, expressed in ovary /gb=AK234521 /gi=115546683 /ug=Ssc.7670 /len=1147"	GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0000377	gi|116175267|ref|NP_001070690.1|/1.59755e-100/U1 small nuclear ribonucleoprotein A [Sus scrofa]
gnl|UG|Ssc#S55327017	3	0.86	13	3.72	3	0.9	"Sus scrofa mRNA, clone:OVR010069C11, expressed in ovary /gb=AK347634 /gi=288777809 /ug=Ssc.3986 /len=1570"	GO:0012506//vesicle membrane	GO:0005543//phospholipid binding	GO:0006810//transport;GO:0009987//cellular process	gi|311274972|ref|XP_001926188.2|/1.89418e-162/PREDICTED: sorting nexin-21-like [Sus scrofa]
gnl|UG|Ssc#S46880158	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa protein kinase N2, transcript variant 1 (PKN2), mRNA /cds=p(1,2910) /gb=XM_001929424 /gi=311254843 /ug=Ssc.9980 /len=2910"	GO:0043231//intracellular membrane-bounded organelle	GO:0019899//enzyme binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0006464//protein modification process;GO:0023052//signaling	gi|311254844|ref|XP_001929459.2|/0/PREDICTED: serine/threonine-protein kinase N2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S40270517	24	6.91	42	12.01	27	8.11	"rmas910b_h15.y1 mas Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW365424 /gi=182800760 /ug=Ssc.21244 /len=674"	GO:0031224//intrinsic to membrane;GO:0005741//mitochondrial outer membrane	GO:0008320//protein transmembrane transporter activity	GO:0006605//protein targeting	gi|73976488|ref|XP_539468.2|/6.90284e-26/PREDICTED: similar to Probable mitochondrial import receptor subunit TOM7 homolog (Translocase of outer membrane 7 kDa subunit homolog) [Canis familiaris]
gnl|UG|Ssc#S58312500	8	2.3	5	1.43	23	6.91	"PREDICTED: Sus scrofa isochorismatase domain-containing protein 1-like (LOC100517640), mRNA /cds=p(10,903) /gb=XM_003123901 /gi=311250081 /ug=Ssc.13508 /len=1957"	GO:0042579//microbody	-	-	gi|311250082|ref|XP_003123949.1|/9.24595e-148/PREDICTED: isochorismatase domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35169586	101	29.08	40	11.43	53	15.93	"Sus scrofa mRNA, clone:OVRM10109G03, expressed in ovary /gb=AK235732 /gi=115550253 /ug=Ssc.16315 /len=1686"	-	-	-	-
gnl|UG|Ssc#S58313514	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa glutamine and serine-rich protein 1-like (LOC100516129), mRNA /cds=p(1,5724) /gb=XM_003122899 /gi=311248020 /ug=Ssc.47327 /len=5724"	-	-	-	gi|311248021|ref|XP_003122947.1|/0/PREDICTED: glutamine and serine-rich protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58307280	9	2.59	23	6.57	13	3.91	"PREDICTED: Sus scrofa cyclin-G2-like, transcript variant 2 (LOC100523979), mRNA /cds=p(307,1341) /gb=XM_003129100 /gi=311262401 /ug=Ssc.14386 /len=2665"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0007050//cell cycle arrest;GO:0000087//M phase of mitotic cell cycle	gi|311262402|ref|XP_003129148.1|/3.47498e-164/PREDICTED: cyclin-G2-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55326987	64	18.43	29	8.29	118	35.46	"Sus scrofa mRNA, clone:OVR010073F11, expressed in ovary /gb=AK347664 /gi=288777839 /ug=Ssc.24236 /len=1851"	"GO:0035097//histone methyltransferase complex;GO:0000775//chromosome, centromeric region;GO:0000123//histone acetyltransferase complex"	GO:0043169//cation binding;GO:0004468//lysine N-acetyltransferase activity;GO:0005515//protein binding	"GO:0043967//histone H4 acetylation;GO:0030097//hemopoiesis;GO:0006355//regulation of transcription, DNA-dependent"	gi|311251256|ref|XP_003124518.1|/0/PREDICTED: probable histone acetyltransferase MYST1-like [Sus scrofa]
gnl|UG|Ssc#S39765182	3	0.86	3	0.86	3	0.9	"raor011_b9r1.y1 aor Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV860460 /gi=178535589 /ug=Ssc.90205 /len=532"	-	-	-	-
gnl|UG|Ssc#S22980911	5	1.44	2	0.57	5	1.5	"Sus scrofa moesin (MSN), mRNA /cds=p(110,1843) /gb=NM_001009578 /gi=57527986 /ug=Ssc.14470 /len=2357"	GO:0030175//filopodium;GO:0031981//nuclear lumen;GO:0031254//trailing edge;GO:0044459//plasma membrane part;GO:0043232;GO:0000267//cell fraction;GO:0030141//stored secretory granule;GO:0005902//microvillus	GO:0008092//cytoskeletal protein binding;GO:0005198//structural molecule activity	GO:0016337//cell-cell adhesion;GO:0002376//immune system process;GO:0022406	gi|57527987|ref|NP_001009578.1|/0/moesin [Sus scrofa]
gnl|UG|Ssc#S55323596	2	0.58	3	0.86	2	0.6	"Sus scrofa mRNA, clone:AMP010073E03, expressed in alveolar macrophages /gb=AK343885 /gi=288781276 /ug=Ssc.84157 /len=3169"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|171460910|ref|NP_001108449.1|/6.59544e-16/U2-associated protein SR140 1 [Mus musculus]
gnl|UG|Ssc#S34500831	3	0.86	0	0	0	0	"DB813330 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10087F09 /clone_end=3' /gb=DB813330 /gi=112774889 /ug=Ssc.51601 /len=741"	-	GO:0046914//transition metal ion binding	-	"gi|291230956|ref|XP_002735428.1|/2.64511e-24/PREDICTED: Zinc finger, CCHC domain containing 24-like isoform 2 [Saccoglossus kowalevskii]"
gnl|UG|Ssc#S58301970	4	1.15	4	1.14	8	2.4	"PREDICTED: Sus scrofa protein NDRG3-like (LOC100511164), partial mRNA /cds=p(1,969) /gb=XM_003134426 /gi=311274810 /ug=Ssc.5077 /len=2563"	GO:0044424//intracellular part	-	GO:0016049//cell growth;GO:0048232//male gamete generation;GO:0048869	"gi|311274811|ref|XP_003134474.1|/9.08148e-162/PREDICTED: protein NDRG3-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58312715	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa FCH domain only protein 2-like (LOC100515303), mRNA /cds=p(490,804) /gb=XM_003123693 /gi=311249641 /ug=Ssc.86110 /len=804"	-	-	-	gi|73950242|ref|XP_535271.2|/6.52837e-99/PREDICTED: similar to FCH domain only 2 [Canis familiaris]
gnl|UG|Ssc#S55320381	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LVR010051C05, expressed in liver /gb=AK345907 /gi=288784491 /ug=Ssc.32059 /len=2025"	-	-	-	-
gnl|UG|Ssc#S18553663	15	4.32	3	0.86	5	1.5	"BX922314 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0013.p.13 5prim, mRNA sequence /clone=scan0013.p.13 /clone_end=5' /gb=BX922314 /gi=90235751 /ug=Ssc.82763 /len=856"	-	-	-	gi|301765174|ref|XP_002918013.1|/3.98315e-89/PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58304229	140	40.31	259	74.03	112	33.66	"PREDICTED: Sus scrofa histone-lysine N-methyltransferase SETD2-like (LOC100517190), mRNA /cds=p(202,8451) /gb=XM_003132171 /gi=311268801 /ug=Ssc.4269 /len=9133"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0016279//protein-lysine N-methyltransferase activity	"GO:0034968//histone lysine methylation;GO:0018022//peptidyl-lysine methylation;GO:0006351//transcription, DNA-dependent;GO:0010033//response to organic substance"	gi|311268802|ref|XP_003132219.1|/0/PREDICTED: histone-lysine N-methyltransferase SETD2-like [Sus scrofa]
gnl|UG|Ssc#S6085589	28	8.06	23	6.57	12	3.61	"POSM0100010_D07F porcine skeletal muscle cDNA library (PoSM) Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BM190416 /gi=17526379 /ug=Ssc.12654 /len=675"	-	-	-	-
gnl|UG|Ssc#S58313448	53	15.26	92	26.3	50	15.03	"PREDICTED: Sus scrofa nucleobindin 2, transcript variant 1 (NUCB2), mRNA /cds=p(291,1550) /gb=XM_003122949 /gi=311248152 /ug=Ssc.43655 /len=1682"	GO:0031965//nuclear membrane;GO:0044421//extracellular region part;GO:0031985//Golgi cisterna	GO:0046872//metal ion binding	-	gi|311248153|ref|XP_003122997.1|/0/PREDICTED: nucleobindin-2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S30056018	10	2.88	8	2.29	7	2.1	"Sus scrofa macoilin mRNA, complete cds /cds=p(40,2034) /gb=AY845019 /gi=59897100 /ug=Ssc.25883 /len=2350"	GO:0005635//nuclear envelope;GO:0044463;GO:0031224//intrinsic to membrane	-	-	"gi|119628283|gb|EAX07878.1|/0/transmembrane protein 57, isoform CRA_c [Homo sapiens]"
gnl|UG|Ssc#S40179603	4	1.15	0	0	6	1.8	"rjca12c_g16.y1 jca Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW274510 /gi=182515068 /ug=Ssc.91623 /len=526"	GO:0030427//site of polarized growth;GO:0005624//membrane fraction;GO:0008305//integrin complex;GO:0044444//cytoplasmic part	GO:0004871//signal transducer activity;GO:0046983//protein dimerization activity	GO:0007338//single fertilization;GO:0007166//cell surface receptor linked signaling pathway;GO:0007599//hemostasis;GO:0010631//epithelial cell migration;GO:0007611//learning or memory;GO:0010467//gene expression;GO:0010975//regulation of neuron projection development;GO:0010810;GO:0002376//immune system process	"gi|194217097|ref|XP_001502633.2|/4.61187e-96/PREDICTED: integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) [Equus caballus]"
gnl|UG|Ssc#S46878683	30	8.64	46	13.15	22	6.61	"PREDICTED: Sus scrofa pumilio domain-containing protein C14orf21-like (LOC100154880), mRNA /cds=p(1,1914) /gb=XM_001927718 /gi=194038848 /ug=Ssc.71739 /len=2037"	-	GO:0003676//nucleic acid binding	-	gi|194038849|ref|XP_001927753.1|/0/PREDICTED: pumilio domain-containing protein C14orf21-like [Sus scrofa]
gnl|UG|Ssc#S31127096	0	0	0	0	2	0.6	"1555591 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY430934 /gi=87232237 /ug=Ssc.89386 /len=457"	-	-	-	-
gnl|UG|Ssc#S58309288	23	6.62	8	2.29	12	3.61	"PREDICTED: Sus scrofa 26S proteasome non-ATPase regulatory subunit 8-like (LOC100515483), mRNA /cds=p(1,1056) /gb=XM_003127110 /gi=311257512 /ug=Ssc.4714 /len=1466"	GO:0031981//nuclear lumen;GO:0022624	GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|311257513|ref|XP_003127158.1|/8.99928e-142/PREDICTED: 26S proteasome non-ATPase regulatory subunit 8-like [Sus scrofa]
gnl|UG|Ssc#S46881137	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa nucleoporin 214kDa (NUP214), partial mRNA /cds=p(368,2315) /gb=XM_001926595 /gi=311246663 /ug=Ssc.26997 /len=2315"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0005635//nuclear envelope	GO:0005488//binding;GO:0005215//transporter activity	GO:0016070//RNA metabolic process;GO:0007049//cell cycle;GO:0015758//glucose transport;GO:0006405//RNA export from nucleus;GO:0006605//protein targeting	"gi|311246664|ref|XP_001926630.2|/0/PREDICTED: nuclear pore complex protein Nup214, partial [Sus scrofa]"
gnl|UG|Ssc#S58303012	203	58.44	258	73.75	192	57.7	"PREDICTED: Sus scrofa protein phosphatase 2, catalytic subunit, beta isozyme (PPP2CB), mRNA /cds=p(176,1039) /gb=XM_003133382 /gi=311272408 /ug=Ssc.236 /len=1672"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427;GO:0008287//protein serine/threonine phosphatase complex;GO:0044444//cytoplasmic part;GO:0005819//spindle;GO:0016020//membrane	GO:0043169//cation binding;GO:0046983//protein dimerization activity;GO:0004721//phosphoprotein phosphatase activity	GO:0046578//regulation of Ras protein signal transduction;GO:0009888//tissue development;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0006915//apoptosis;GO:0000302//response to reactive oxygen species;GO:0010467//gene expression;GO:0006464//protein modification process	gi|311272409|ref|XP_003133430.1|/3.38367e-172/PREDICTED: serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [Sus scrofa]
gnl|UG|Ssc#S58305618	18	5.18	26	7.43	16	4.81	"PREDICTED: Sus scrofa COMM domain-containing protein 3-like (LOC100520972), mRNA /cds=p(76,663) /gb=XM_003130781 /gi=311265797 /ug=Ssc.6991 /len=1007"	-	GO:0005488//binding	-	gi|311265798|ref|XP_003130829.1|/6.48487e-108/PREDICTED: COMM domain-containing protein 3-like [Sus scrofa]
gnl|UG|Ssc#S31117041	2	0.58	0	0	0	0	"1539011 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY420879 /gi=87222182 /ug=Ssc.34822 /len=653"	-	-	-	-
gnl|UG|Ssc#S18386209	0	0	0	0	2	0.6	"937519 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK466322 /gi=40837599 /ug=Ssc.83361 /len=838"	-	-	-	-
gnl|UG|Ssc#S46880516	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa casein kinase I isoform gamma-1-like (LOC100157196), partial mRNA /cds=p(1,1196) /gb=XM_001927023 /gi=311244603 /ug=Ssc.83534 /len=1196"	-	-	-	-
gnl|UG|Ssc#S18279134	28	8.06	36	10.29	8	2.4	"BP435031 full-length enriched swine cDNA library, adult lung Sus scrofa cDNA clone LNG010106C01 5', mRNA sequence /clone=LNG010106C01 /clone_end=5' /gb=BP435031 /gi=40425098 /ug=Ssc.47917 /len=828"	-	-	-	-
gnl|UG|Ssc#S35170885	5	1.44	4	1.14	0	0	"Sus scrofa mRNA, clone:OVRM10072B12, expressed in ovary /gb=AK235357 /gi=115548954 /ug=Ssc.26417 /len=2456"	GO:0031090//organelle membrane;GO:0043005//neuron projection;GO:0043232;GO:0005626//insoluble fraction;GO:0005770//late endosome	GO:0060089;GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0008092//cytoskeletal protein binding	"GO:0051704;GO:0001775//cell activation;GO:0048858//cell projection morphogenesis;GO:0019229//regulation of vasoconstriction;GO:0048017//inositol lipid-mediated signaling;GO:0007041//lysosomal transport;GO:0045765//regulation of angiogenesis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0043065//positive regulation of apoptosis;GO:0014706//striated muscle tissue development;GO:0009207;GO:0051726//regulation of cell cycle;GO:0016049//cell growth;GO:0031346//positive regulation of cell projection organization;GO:0031960//response to corticosteroid stimulus;GO:0001837//epithelial to mesenchymal transition;GO:0016477//cell migration;GO:0045596//negative regulation of cell differentiation;GO:0010952//positive regulation of peptidase activity;GO:0045597//positive regulation of cell differentiation;GO:0006935//chemotaxis;GO:0007265//Ras protein signal transduction;GO:0010975//regulation of neuron projection development;GO:0030155//regulation of cell adhesion;GO:0007599//hemostasis;GO:0043066//negative regulation of apoptosis;GO:0031589//cell-substrate adhesion;GO:0001101//response to acid;GO:0009968//negative regulation of signal transduction;GO:0006939//smooth muscle contraction;GO:0032233//positive regulation of actin filament bundle assembly;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0030518//steroid hormone receptor signaling pathway;GO:0032413//negative regulation of ion transmembrane transporter activity;GO:0030041//actin filament polymerization;GO:0009746;GO:0006950//response to stress;GO:0006412//translation;GO:0030832//regulation of actin filament length;GO:0031345//negative regulation of cell projection organization;GO:0010769//regulation of cell morphogenesis involved in differentiation;GO:0042345//regulation of NF-kappaB import into nucleus;GO:0006355//regulation of transcription, DNA-dependent"	gi|73980591|ref|XP_540101.2|/1.4918e-113/PREDICTED: similar to rhoB gene [Canis familiaris]
gnl|UG|Ssc#S43678675	9	2.59	9	2.57	10	3.01	"Sus scrofa pre-mRNA processing factor 19 mRNA, complete cds /cds=p(17,1531) /gb=EU417752 /gi=171920011 /ug=Ssc.44045 /len=1575"	GO:0015630//microtubule cytoskeleton;GO:0005681//spliceosomal complex;GO:0016604//nuclear body;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0003676//nucleic acid binding;GO:0004842//ubiquitin-protein ligase activity	"GO:0045596//negative regulation of cell differentiation;GO:0006259//DNA metabolic process;GO:0045687//positive regulation of glial cell differentiation;GO:0000398//nuclear mRNA splicing, via spliceosome;GO:0016567//protein ubiquitination;GO:0006629//lipid metabolic process;GO:0001832//blastocyst growth;GO:0033554//cellular response to stress"	gi|190360605|ref|NP_001121929.1|/0/pre-mRNA-processing factor 19 [Sus scrofa]
gnl|UG|Ssc#S20937468	11	3.17	6	1.72	8	2.4	"AJ649191 CSEQRAN19 Sus scrofa cDNA clone C0003271_M24, mRNA sequence /clone=C0003271_M24 /gb=AJ649191 /gi=49326036 /ug=Ssc.85579 /len=501"	-	-	-	gi|208022647|ref|NP_001030130.2|/4.4344e-47/hypothetical protein LOC619573 [Rattus norvegicus]
gnl|UG|Ssc#S55326469	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10089A11, expressed in ovary /gb=AK348182 /gi=288778357 /ug=Ssc.43812 /len=3588"	-	GO:0005515//protein binding	-	gi|296484397|gb|DAA26512.1|/0/PALM2-AKAP2 readthrough transcript [Bos taurus]
gnl|UG|Ssc#S55325604	9	2.59	13	3.72	10	3.01	"Sus scrofa mRNA, clone:PCT010005A01, expressed in placenta /gb=AK349047 /gi=288779222 /ug=Ssc.41770 /len=2595"	GO:0016604//nuclear body	GO:0042802//identical protein binding;GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation	gi|73998767|ref|XP_543993.2|/0/PREDICTED: similar to Tripartite motif protein 8 (RING finger protein 27) (Glioblastoma-expressed RING finger protein) [Canis familiaris]
gnl|UG|Ssc#S58302213	180	51.82	40	11.43	162	48.69	"PREDICTED: Sus scrofa LON peptidase N-terminal domain and RING finger protein 1-like (LOC100525314), mRNA /cds=p(1,2835) /gb=XM_003134184 /gi=311274186 /ug=Ssc.43827 /len=4017"	-	"GO:0046914//transition metal ion binding;GO:0042623//ATPase activity, coupled"	GO:0019538//protein metabolic process	gi|311274187|ref|XP_003134232.1|/0/PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Sus scrofa]
gnl|UG|Ssc#S40045387	8	2.3	4	1.14	2	0.6	"reru34c_a15.y1 eru Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW140294 /gi=182519046 /ug=Ssc.60231 /len=571"	GO:0043231//intracellular membrane-bounded organelle;GO:0000785//chromatin	GO:0000975;GO:0019904//protein domain specific binding;GO:0003713//transcription coactivator activity	GO:0030522//intracellular receptor mediated signaling pathway;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007166//cell surface receptor linked signaling pathway	gi|149714967|ref|XP_001504596.1|/6.42597e-68/PREDICTED: calcium binding and coiled-coil domain 1 [Equus caballus]
gnl|UG|Ssc#S58303991	3	0.86	0	0	6	1.8	"PREDICTED: Sus scrofa coatomer subunit gamma-like (LOC100516936), mRNA /cds=p(1,1875) /gb=XM_003132406 /gi=311269355 /ug=Ssc.3954 /len=2265"	GO:0030120//vesicle coat	GO:0005488//binding;GO:0016740//transferase activity	GO:0048200;GO:0015031//protein transport	gi|311269356|ref|XP_003132454.1|/0/PREDICTED: coatomer subunit gamma-like [Sus scrofa]
gnl|UG|Ssc#S19542684	2	0.58	0	0	0	0	"947593 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158780 /gi=46173210 /ug=Ssc.21653 /len=831"	-	-	-	gi|18027768|gb|AAL55845.1|AF318338_1/1.92726e-08/unknown [Homo sapiens]
gnl|UG|Ssc#S46876746	8	2.3	0	0	18	5.41	"PREDICTED: Sus scrofa strawberry notch homolog 1 (Drosophila) (SBNO1), mRNA /cds=p(137,4162) /gb=XM_001925507 /gi=311270573 /ug=Ssc.25111 /len=5905"	-	GO:0003676//nucleic acid binding;GO:0003824//catalytic activity;GO:0032559	-	gi|311270574|ref|XP_001925542.2|/0/PREDICTED: protein strawberry notch homolog 1 [Sus scrofa]
gnl|UG|Ssc#S55325510	55	15.83	134	38.3	51	15.33	"Sus scrofa mRNA, clone:PTG010008G02, expressed in pituitary gland /gb=AK349141 /gi=288779316 /ug=Ssc.49971 /len=1362"	GO:0044424//intracellular part	GO:0004871//signal transducer activity;GO:0005488//binding	GO:0007165//signal transduction	gi|194037882|ref|XP_001928484.1|/1.93234e-151/PREDICTED: SPRY domain-containing SOCS box protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58306962	5	1.44	0	0	2	0.6	"PREDICTED: Sus scrofa amyloid beta A4 precursor protein-binding family B member 1-like (LOC100519163), mRNA /cds=p(26,1723) /gb=XM_003129460 /gi=311263055 /ug=Ssc.43677 /len=2123"	GO:0030427//site of polarized growth;GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031252//cell leading edge	GO:0030528//transcription regulator activity;GO:0005515//protein binding	GO:0010558;GO:0023052//signaling;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0006915//apoptosis;GO:0007090//regulation of S phase of mitotic cell cycle;GO:0033554//cellular response to stress;GO:0016049//cell growth;GO:0016573//histone acetylation	gi|311263056|ref|XP_003129508.1|/0/PREDICTED: amyloid beta A4 precursor protein-binding family B member 1-like [Sus scrofa]
gnl|UG|Ssc#S58306656	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa ras-related protein Rab-38-like (LOC100522561), mRNA /cds=p(1,705) /gb=XM_003129742 /gi=311263673 /ug=Ssc.24019 /len=1428"	GO:0005624//membrane fraction;GO:0048770;GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0006810//transport;GO:0035556//intracellular signal transduction;GO:0009207;GO:0033363//secretory granule organization	gi|311263674|ref|XP_003129790.1|/2.08402e-119/PREDICTED: ras-related protein Rab-38-like [Sus scrofa]
gnl|UG|Ssc#S26645409	2	0.58	0	0	0	0	"BW984000 full-length enriched swine cDNA library, adult intestine Sus scrofa cDNA clone ITT010090E05 5', mRNA sequence /clone=ITT010090E05 /clone_end=5' /gb=BW984000 /gi=74253312 /ug=Ssc.94746 /len=844"	GO:0044459//plasma membrane part;GO:0031981//nuclear lumen	GO:0034062//RNA polymerase activity;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	"gi|149740916|ref|XP_001504331.1|/5.22695e-134/PREDICTED: similar to polymerase (RNA) I polypeptide E, 53kDa [Equus caballus]"
gnl|UG|Ssc#S35168023	33	9.5	38	10.86	54	16.23	"Sus scrofa mRNA, clone:THY010065G01, expressed in thymus /gb=AK239131 /gi=115551667 /ug=Ssc.47379 /len=2726"	GO:0016604//nuclear body	GO:0019904//protein domain specific binding;GO:0043566//structure-specific DNA binding;GO:0019888//protein phosphatase regulator activity	GO:0006396//RNA processing	gi|301786012|ref|XP_002928421.1|/1.00544e-158/PREDICTED: WW domain-binding protein 11-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46880124	3	0.86	2	0.57	8	2.4	"PREDICTED: Sus scrofa ATPase, Na+/K+ transporting, alpha 4 polypeptide (ATP1A4), mRNA /cds=p(337,3429) /gb=XM_001928979 /gi=311254013 /ug=Ssc.33816 /len=3679"	GO:0005887//integral to plasma membrane	GO:0043169//cation binding;GO:0008556//potassium-transporting ATPase activity;GO:0032559	"GO:0048870//cell motility;GO:0009206;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0006885//regulation of pH;GO:0030001//metal ion transport"	gi|194035851|ref|XP_001929014.1|/0/PREDICTED: sodium/potassium-transporting ATPase subunit alpha-4 [Sus scrofa]
gnl|UG|Ssc#S35171339	10	2.88	6	1.72	23	6.91	"Sus scrofa mRNA, clone:OVRM10051E09, expressed in ovary /gb=AK235117 /gi=115548500 /ug=Ssc.2507 /len=3275"	-	GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|73961806|ref|XP_537298.2|/0/PREDICTED: similar to sudD suppressor of bimD6 homolog isoform 1 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58308391	21	6.05	11	3.14	41	12.32	"PREDICTED: Sus scrofa Fas (TNFRSF6) associated factor 1 (FAF1), mRNA /cds=p(1,1920) /gb=XM_003127997 /gi=311259347 /ug=Ssc.11812 /len=2089"	GO:0043231//intracellular membrane-bounded organelle;GO:0012505//endomembrane system;GO:0031264//death-inducing signaling complex;GO:0044444//cytoplasmic part	GO:0019207//kinase regulator activity;GO:0008134//transcription factor binding;GO:0019900//kinase binding	GO:0007155//cell adhesion;GO:0042994//cytoplasmic sequestering of transcription factor;GO:0006461//protein complex assembly;GO:0009894;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0006915//apoptosis	gi|311259348|ref|XP_003128045.1|/0/PREDICTED: FAS-associated factor 1-like [Sus scrofa]
gnl|UG|Ssc#S35164501	12	3.45	2	0.57	8	2.4	"Sus scrofa mRNA, clone:MLN010049F08, expressed in mesenteric lymph node /gb=AK233840 /gi=115555225 /ug=Ssc.83928 /len=1555"	-	-	-	-
gnl|UG|Ssc#S26721530	2	0.58	0	0	3	0.9	"AJ957614 KN404_2 Sus scrofa cDNA clone C0007755a12 3', mRNA sequence /clone=C0007755a12 /clone_end=3' /gb=AJ957614 /gi=74374430 /ug=Ssc.81398 /len=915"	-	-	-	gi|297301471|ref|XP_002805799.1|/2.86244e-11/PREDICTED: hypothetical protein LOC100430589 [Macaca mulatta]
gnl|UG|Ssc#S35171360	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10049D05, expressed in ovary /gb=AK235096 /gi=115548479 /ug=Ssc.19637 /len=1307"	GO:0044421//extracellular region part	GO:0005126//cytokine receptor binding	GO:0008283//cell proliferation;GO:0001932//regulation of protein phosphorylation	gi|194719527|gb|ACF93801.1|/6.13759e-123/putative interleukin-34 [Sus scrofa]
gnl|UG|Ssc#S40440480	488	140.5	264	75.46	268	80.54	"rret24_i8.y1 ret Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW535086 /gi=183078817 /ug=Ssc.42584 /len=661"	-	-	-	-
gnl|UG|Ssc#S46880181	4	1.15	4	1.14	2	0.6	"PREDICTED: Sus scrofa Protein fam69a (LOC100157200), mRNA /cds=p(1,1263) /gb=XM_001925711 /gi=311254784 /ug=Ssc.7641 /len=2195"	GO:0031224//intrinsic to membrane	GO:0046872//metal ion binding	-	gi|311254785|ref|XP_001925746.2|/0/PREDICTED: protein FAM69A [Sus scrofa]
gnl|UG|Ssc#S58301095	9	2.59	0	0	9	2.7	"PREDICTED: Sus scrofa ribose-phosphate pyrophosphokinase 1-like (LOC100517744), mRNA /cds=p(169,1125) /gb=XM_003135301 /gi=311276761 /ug=Ssc.1605 /len=2704"	GO:0032991//macromolecular complex;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0016778;GO:0046872//metal ion binding;GO:0042802//identical protein binding;GO:0032561;GO:0030246//carbohydrate binding;GO:0032559	GO:0006220//pyrimidine nucleotide metabolic process;GO:0006796//phosphate metabolic process;GO:0009887//organ morphogenesis;GO:0046390//ribose phosphate biosynthetic process;GO:0009168//purine ribonucleoside monophosphate biosynthetic process;GO:0009113//purine base biosynthetic process	"gi|118137847|pdb|2H06|A/2.52184e-178/Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate Synthetase 1"
gnl|UG|Ssc#S35171984	8	2.3	7	2	3	0.9	"Sus scrofa mRNA, clone:OVRM10020C10, expressed in ovary /gb=AK234827 /gi=115547851 /ug=Ssc.7627 /len=3403"	GO:0031981//nuclear lumen	GO:0008409//5'-3' exonuclease activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	"GO:0006396//RNA processing;GO:0040007//growth;GO:0006308//DNA catabolic process;GO:0048232//male gamete generation;GO:0006351//transcription, DNA-dependent"	gi|311274471|ref|XP_003134355.1|/0/PREDICTED: 5'-3' exoribonuclease 2-like [Sus scrofa]
gnl|UG|Ssc#S58310099	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa prolow-density lipoprotein receptor-related protein 1-like (LOC100519427), mRNA /cds=p(1,2598) /gb=XM_003126324 /gi=311255750 /ug=Ssc.61957 /len=2598"	GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane;GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0034185//apolipoprotein binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0044260;GO:0051336;GO:0051050//positive regulation of transport;GO:0006897//endocytosis;GO:0032374//regulation of cholesterol transport;GO:0048523//negative regulation of cellular process;GO:0032502//developmental process	gi|311255751|ref|XP_003126372.1|/0/PREDICTED: prolow-density lipoprotein receptor-related protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58311893	6	1.73	3	0.86	2	0.6	"PREDICTED: Sus scrofa TBC1 domain family member 10B-like (LOC100514343), mRNA /cds=p(37,2478) /gb=XM_003124505 /gi=311251321 /ug=Ssc.4817 /len=3361"	GO:0044464//cell part	GO:0005099//Ras GTPase activator activity	GO:0032318//regulation of Ras GTPase activity	gi|311251322|ref|XP_003124553.1|/0/PREDICTED: TBC1 domain family member 10B-like [Sus scrofa]
gnl|UG|Ssc#S46881281	12	3.45	0	0	5	1.5	"PREDICTED: Sus scrofa Acetyl-Coenzyme A acetyltransferase 2 (LOC100152303), mRNA /cds=p(107,1300) /gb=XM_001928345 /gi=311243699 /ug=Ssc.55210 /len=1775"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0016453	GO:0007417//central nervous system development;GO:0044248//cellular catabolic process;GO:0044238//primary metabolic process;GO:0051789//response to protein stimulus;GO:0070542//response to fatty acid;GO:0007584//response to nutrient	"gi|194033405|ref|XP_001928380.1|/0/PREDICTED: acetyl-CoA acetyltransferase, cytosolic [Sus scrofa]"
gnl|UG|Ssc#S46878251	30	8.64	31	8.86	26	7.81	"PREDICTED: Sus scrofa uncharacterized protein C6orf62 homolog (LOC100155872), mRNA /cds=p(1401,2090) /gb=XM_001928389 /gi=311259810 /ug=Ssc.33340 /len=3401"	GO:0044464//cell part	-	-	gi|117306298|gb|AAI26616.1|/8.75563e-123/Chromosome 6 open reading frame 62 ortholog [Bos taurus]
gnl|UG|Ssc#S55321397	12	3.45	12	3.43	25	7.51	"Sus scrofa mRNA, clone:TES010101C04, expressed in testis /gb=AK351359 /gi=288783475 /ug=Ssc.1050 /len=1237"	GO:0044444//cytoplasmic part;GO:0042598//vesicular fraction	GO:0016744;GO:0005529//sugar binding	GO:0005997//xylulose metabolic process;GO:0006098//pentose-phosphate shunt;GO:0015980//energy derivation by oxidation of organic compounds;GO:0006000//fructose metabolic process	gi|42476292|ref|NP_113999.2|/4.72407e-178/transaldolase [Rattus norvegicus]
gnl|UG|Ssc#S55319985	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LVRM10051G01, expressed in liver /gb=AK346105 /gi=288784899 /ug=Ssc.18531 /len=1972"	GO:0043231//intracellular membrane-bounded organelle;GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|126330954|ref|XP_001363060.1|/8.11045e-51/PREDICTED: similar to Ribosomal protein L34 [Monodelphis domestica]
gnl|UG|Ssc#S55844929	55	15.83	42	12.01	52	15.63	"Sus scrofa DnaJ (Hsp40) homolog, subfamily C, member 14 (DNAJC14), mRNA /cds=p(186,2300) /gb=NM_001185066 /gi=297307128 /ug=Ssc.1307 /len=3527"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0001664//G-protein-coupled receptor binding	GO:0051704;GO:0006810//transport;GO:0044267//cellular protein metabolic process	gi|297307129|ref|NP_001171995.1|/0/dnaJ homolog subfamily C member 14 [Sus scrofa]
gnl|UG|Ssc#S23699826	0	0	0	0	0	0	"1110003 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN110929 /gi=59789493 /ug=Ssc.41017 /len=891"	GO:0031981//nuclear lumen	-	GO:0022613//ribonucleoprotein complex biogenesis	gi|281353888|gb|EFB29472.1|/5.65467e-150/hypothetical protein PANDA_008768 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40125539	138	39.73	136	38.88	114	34.26	"rfty519b_h14.y1 fty Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW220446 /gi=182564173 /ug=Ssc.68078 /len=390"	-	-	-	-
gnl|UG|Ssc#S43678668	123	35.41	159	45.45	71	21.34	"Sus scrofa ARHGEF2 mRNA for rho/rac guanine nucleotide exchange factor 2, complete cds /cds=p(160,3045) /gb=AB364503 /gi=183223976 /ug=Ssc.8984 /len=4104"	GO:0043231//intracellular membrane-bounded organelle;GO:0043296//apical junction complex;GO:0015630//microtubule cytoskeleton;GO:0044297//cell body;GO:0030425//dendrite;GO:0001726//ruffle;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0017048//Rho GTPase binding;GO:0015631//tubulin binding;GO:0005089//Rho guanyl-nucleotide exchange factor activity	GO:0032989;GO:0007266//Rho protein signal transduction;GO:0008283//cell proliferation;GO:0051091//positive regulation of transcription factor activity;GO:0015031//protein transport;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0030036//actin cytoskeleton organization;GO:0040001//establishment of mitotic spindle localization;GO:0010721//negative regulation of cell development;GO:0006917//induction of apoptosis;GO:0009966//regulation of signal transduction;GO:0007019//microtubule depolymerization;GO:0000087//M phase of mitotic cell cycle	gi|291397798|ref|XP_002715442.1|/0/PREDICTED: Rho/Rac guanine nucleotide exchange factor 2 isoform 1 [Oryctolagus cuniculus]
gnl|UG|Ssc#S55321233	9	2.59	0	0	7	2.1	"Sus scrofa mRNA, clone:ITT010092A09, expressed in small intestine /gb=AK345254 /gi=288783639 /ug=Ssc.81916 /len=1828"	GO:0030427//site of polarized growth;GO:0043005//neuron projection;GO:0016020//membrane;GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0044297//cell body;GO:0005819//spindle	"GO:0046983//protein dimerization activity;GO:0032559;GO:0015631//tubulin binding;GO:0042623//ATPase activity, coupled"	GO:0033036;GO:0000226//microtubule cytoskeleton organization;GO:0051325//interphase;GO:0010975//regulation of neuron projection development;GO:0009207;GO:0000087//M phase of mitotic cell cycle;GO:0016477//cell migration	gi|57031738|ref|XP_533445.1|/0/PREDICTED: similar to katanin p60 subunit A 1 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58313903	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa Ras and Rab interactor 1 (RIN1), mRNA /cds=p(1,2355) /gb=XM_003122498 /gi=311247223 /ug=Ssc.81022 /len=2512"	GO:0044424//intracellular part;GO:0016020//membrane	GO:0005488//binding	GO:0009987//cellular process	gi|311247224|ref|XP_003122546.1|/0/PREDICTED: ras and Rab interactor 1-like [Sus scrofa]
gnl|UG|Ssc#S6090871	0	0	5	1.43	0	0	"Sus scrofa RL14 olfactory receptor mRNA, partial cds /cds=p(1,708) /gb=AF042016 /gi=3273632 /ug=Ssc.16073 /len=708"	-	-	-	-
gnl|UG|Ssc#S18557753	11	3.17	2	0.57	7	2.1	"BX926404 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0014.l.20 5prim, mRNA sequence /clone=scan0014.l.20 /clone_end=5' /gb=BX926404 /gi=90229076 /ug=Ssc.26014 /len=900"	-	-	-	-
gnl|UG|Ssc#S35171183	35	10.08	138	39.45	50	15.03	"Sus scrofa mRNA, clone:LNG010004B02, expressed in lung /gb=AK231640 /gi=115548656 /ug=Ssc.56990 /len=1436"	GO:0031966//mitochondrial membrane;GO:0016021//integral to membrane;GO:0019866//organelle inner membrane;GO:0005759//mitochondrial matrix	GO:0005488//binding;GO:0022829//wide pore channel activity;GO:0005244//voltage-gated ion channel activity	GO:0034220//ion transmembrane transport;GO:0043269//regulation of ion transport	gi|190200|gb|AAA60144.1|/1.07033e-164/porin [Homo sapiens]
gnl|UG|Ssc#S40086634	4	1.15	0	0	14	4.21	"rfcc34b_i7.y1 fcc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW181541 /gi=182491612 /ug=Ssc.89329 /len=597"	-	-	-	gi|300872546|gb|ADK39026.1|/3.15971e-15/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S23695366	0	0	9	2.57	3	0.9	"1103852 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN106469 /gi=59781732 /ug=Ssc.45415 /len=831"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0006259//DNA metabolic process;GO:0006996//organelle organization;GO:0009292//genetic transfer	gi|119920765|ref|XP_605445.3|/3.8375e-73/PREDICTED: sugarbabe-like [Bos taurus]
gnl|UG|Ssc#S18381799	13	3.74	3	0.86	10	3.01	"932678 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK461915 /gi=40833196 /ug=Ssc.75431 /len=857"	-	-	-	-
gnl|UG|Ssc#S46880046	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG5), mRNA /cds=p(1,3051) /gb=XM_001926398 /gi=311254119 /ug=Ssc.21690 /len=4409"	GO:0043231//intracellular membrane-bounded organelle	GO:0019903//protein phosphatase binding	GO:0006405//RNA export from nucleus;GO:0016311//dephosphorylation;GO:0000956//nuclear-transcribed mRNA catabolic process	gi|311254120|ref|XP_001926433.2|/0/PREDICTED: protein SMG5 [Sus scrofa]
gnl|UG|Ssc#S55326506	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10078H04, expressed in ovary /gb=AK348145 /gi=288778320 /ug=Ssc.49196 /len=781"	GO:0034518;GO:0044424//intracellular part	"GO:0008135//translation factor activity, nucleic acid binding;GO:0000339//RNA cap binding"	GO:0006412//translation	gi|311249617|ref|XP_003123706.1|/1.04553e-114/PREDICTED: eukaryotic translation initiation factor 4E type 1B-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58304655	0	0	2	0.57	3	0.9	"PREDICTED: Sus scrofa ATPase family AAA domain-containing protein 5-like (LOC100522702), mRNA /cds=p(70,642) /gb=XM_003131738 /gi=311267896 /ug=Ssc.43603 /len=1566"	GO:0043231//intracellular membrane-bounded organelle	GO:0016462//pyrophosphatase activity;GO:0032559	GO:0033554//cellular response to stress	gi|311267897|ref|XP_003131786.1|/4.02453e-103/PREDICTED: ATPase family AAA domain-containing protein 5-like [Sus scrofa]
gnl|UG|Ssc#S20116741	0	0	2	0.57	0	0	"Sus scrofa integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) (ITGB1), mRNA /cds=p(241,2637) /gb=NM_213968 /gi=47522763 /ug=Ssc.4621 /len=3831"	GO:0005624//membrane fraction;GO:0032155;GO:0048770;GO:0001726//ruffle;GO:0005924//cell-substrate adherens junction;GO:0005887//integral to plasma membrane;GO:0045202//synapse	GO:0004871//signal transducer activity;GO:0005102//receptor binding;GO:0046983//protein dimerization activity	GO:0007166//cell surface receptor linked signaling pathway;GO:0035051//cardiac cell differentiation;GO:0007599//hemostasis;GO:0034330;GO:0045165//cell fate commitment;GO:0008283//cell proliferation;GO:0016337//cell-cell adhesion;GO:0048870//cell motility;GO:0043009//chordate embryonic development;GO:0030030//cell projection organization;GO:0022402//cell cycle process;GO:0006915//apoptosis;GO:0031589//cell-substrate adhesion;GO:0045595//regulation of cell differentiation;GO:0006935//chemotaxis;GO:0007276//gamete generation;GO:0051704;GO:0030098//lymphocyte differentiation;GO:0002682//regulation of immune system process;GO:0006952//defense response;GO:0031032//actomyosin structure organization	gi|47522764|ref|NP_999133.1|/0/integrin beta-1 precursor [Sus scrofa]
gnl|UG|Ssc#S46879911	37	10.65	3	0.86	23	6.91	"PREDICTED: Sus scrofa splicing factor 3b, subunit 4, 49kDa (SF3B4), mRNA /cds=p(54,1328) /gb=XM_001926489 /gi=311254399 /ug=Ssc.3222 /len=1548"	-	-	-	-
gnl|UG|Ssc#S16350447	0	0	0	0	3	0.9	"AU296045 full-length enriched pig cDNA library, main and accessory olfactory bulb Sus scrofa cDNA clone olf_011_C11 5', mRNA sequence /clone=olf_011_C11 /clone_end=5' /gb=AU296045 /gi=55830838 /ug=Ssc.28624 /len=651"	GO:0001726//ruffle;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0005089//Rho guanyl-nucleotide exchange factor activity;GO:0005515//protein binding	GO:0030035//microspike assembly;GO:0006917//induction of apoptosis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009966//regulation of signal transduction;GO:0007266//Rho protein signal transduction	gi|300797040|ref|NP_001179002.1|/1.87209e-56/rho guanine nucleotide exchange factor 4 [Bos taurus]
gnl|UG|Ssc#S35169224	16	4.61	7	2	14	4.21	"Sus scrofa mRNA, clone:LVR010048D05, expressed in liver /gb=AK232445 /gi=115550615 /ug=Ssc.12892 /len=1801"	GO:0033267//axon part;GO:0032991//macromolecular complex;GO:0032432//actin filament bundle;GO:0030425//dendrite;GO:0031674//I band;GO:0044297//cell body;GO:0005924//cell-substrate adherens junction	GO:0004672//protein kinase activity;GO:0060089;GO:0030528//transcription regulator activity;GO:0005102//receptor binding;GO:0032559;GO:0019904//protein domain specific binding	GO:0001952//regulation of cell-matrix adhesion;GO:0030177//positive regulation of Wnt receptor signaling pathway;GO:0044057;GO:0048858//cell projection morphogenesis;GO:0043405//regulation of MAP kinase activity;GO:0033673//negative regulation of kinase activity;GO:0045661//regulation of myoblast differentiation;GO:0035088//establishment or maintenance of apical/basal cell polarity;GO:0022402//cell cycle process;GO:0010927;GO:0031346//positive regulation of cell projection organization;GO:0000904//cell morphogenesis involved in differentiation;GO:0007568//aging;GO:0043066//negative regulation of apoptosis;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0030307//positive regulation of cell growth;GO:0003015//heart process;GO:0010659//cardiac muscle cell apoptosis;GO:0030198//extracellular matrix organization;GO:0008285//negative regulation of cell proliferation;GO:0034330;GO:0048754//branching morphogenesis of a tube;GO:0051259//protein oligomerization;GO:0030036//actin cytoskeleton organization;GO:0014909//smooth muscle cell migration;GO:0001944//vasculature development	gi|4758606|ref|NP_004508.1|/0/integrin-linked protein kinase [Homo sapiens]
gnl|UG|Ssc#S46876677	162	46.64	159	45.45	258	77.54	"PREDICTED: Sus scrofa putative phospholipase B-like 2-like, transcript variant 1 (LOC100156824), mRNA /cds=p(1,1773) /gb=XM_001925779 /gi=311270695 /ug=Ssc.55111 /len=1883"	GO:0005764//lysosome	GO:0003824//catalytic activity	GO:0006629//lipid metabolic process	gi|311270696|ref|XP_001925814.2|/0/PREDICTED: putative phospholipase B-like 2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S6064999	0	0	0	0	5	1.5	"MI-P-A2-aez-g-08-1-UM.s1 MI-P-A2 Sus scrofa cDNA clone MI-P-A2-aez-g-08-1-UM 3', mRNA sequence /clone=MI-P-A2-aez-g-08-1-UM /clone_end=3' /gb=BQ597547 /gi=21544273 /ug=Ssc.2574 /len=647"	-	-	-	-
gnl|UG|Ssc#S58314350	10	2.88	0	0	7	2.1	"PREDICTED: Sus scrofa structural maintenance of chromosomes protein 2-like (LOC100517322), mRNA /cds=p(1,1845) /gb=XM_003122051 /gi=311246143 /ug=Ssc.55032 /len=3498"	GO:0000793//condensed chromosome;GO:0043231//intracellular membrane-bounded organelle	GO:0046983//protein dimerization activity;GO:0032559	GO:0000070//mitotic sister chromatid segregation;GO:0044419//interspecies interaction between organisms	gi|311246144|ref|XP_003122099.1|/0/PREDICTED: structural maintenance of chromosomes protein 2-like [Sus scrofa]
gnl|UG|Ssc#S18355673	0	0	2	0.57	0	0	"904252 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK451118 /gi=40798332 /ug=Ssc.58124 /len=702"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|301754307|ref|XP_002912967.1|/2.17118e-09/PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20936031	66	19	43	12.29	39	11.72	"AJ647754 CSEQRAN19 Sus scrofa cDNA clone C0003260_J09, mRNA sequence /clone=C0003260_J09 /gb=AJ647754 /gi=49324599 /ug=Ssc.85526 /len=485"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	"GO:0016769//transferase activity, transferring nitrogenous groups;GO:0000166//nucleotide binding;GO:0008943//glyceraldehyde-3-phosphate dehydrogenase activity"	GO:0006007//glucose catabolic process;GO:0006915//apoptosis;GO:0031647//regulation of protein stability;GO:0032501//multicellular organismal process;GO:0018119//peptidyl-cysteine S-nitrosylation	gi|62664602|ref|XP_574168.1|/1.97286e-59/PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Rattus norvegicus]
gnl|UG|Ssc#S18270045	0	0	4	1.14	0	0	"BP166536 full-length enriched swine cDNA library, adult thymus Sus scrofa cDNA clone THY010031F10 5', mRNA sequence /clone=THY010031F10 /clone_end=5' /gb=BP166536 /gi=40416009 /ug=Ssc.24246 /len=883"	-	-	-	-
gnl|UG|Ssc#S58312468	3	0.86	4	1.14	3	0.9	"PREDICTED: Sus scrofa AF4/FMR2 family member 4-like (LOC100524487), mRNA /cds=p(1,3495) /gb=XM_003123929 /gi=311250146 /ug=Ssc.13568 /len=5331"	GO:0031981//nuclear lumen	GO:0005488//binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent;GO:0007281//germ cell development"	gi|311250147|ref|XP_003123977.1|/0/PREDICTED: AF4/FMR2 family member 4-like [Sus scrofa]
gnl|UG|Ssc#S39766499	43	12.38	48	13.72	42	12.62	"raor033_c1.y1 aor Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV861777 /gi=178610214 /ug=Ssc.63113 /len=492"	-	-	-	-
gnl|UG|Ssc#S46880768	6	1.73	0	0	3	0.9	"PREDICTED: Sus scrofa MU-2/AP1M2 domain containing, death-inducing (MUDENG), mRNA /cds=p(275,1747) /gb=XM_001927783 /gi=311245563 /ug=Ssc.17873 /len=2551"	GO:0030119//AP-type membrane coat adaptor complex	-	GO:0015031//protein transport	gi|194034492|ref|XP_001927818.1|/0/PREDICTED: MHD domain-containing death-inducing protein-like [Sus scrofa]
gnl|UG|Ssc#S26710736	0	0	3	0.86	0	0	"AJ946820 KN404_1 Sus scrofa cDNA clone C0007744d07 3', mRNA sequence /clone=C0007744d07 /clone_end=3' /gb=AJ946820 /gi=74363562 /ug=Ssc.94410 /len=891"	GO:0000267//cell fraction;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0004175//endopeptidase activity;GO:0008238//exopeptidase activity;GO:0008236//serine-type peptidase activity	GO:0019538//protein metabolic process	gi|149642995|ref|NP_001092504.1|/1.83838e-132/tripeptidyl-peptidase 2 [Bos taurus]
gnl|UG|Ssc#S35168416	2	0.58	3	0.86	3	0.9	"Sus scrofa mRNA, clone:LVRM10010C11, expressed in liver /gb=AK232708 /gi=115551274 /ug=Ssc.847 /len=2322"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0000989//transcription factor binding transcription factor activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	"GO:0006351//transcription, DNA-dependent"	gi|73990311|ref|XP_852372.1|/0/PREDICTED: similar to Transcription factor Dp-2 (E2F dimerization partner 2) isoform 2 [Canis familiaris]
gnl|UG|Ssc#S49953824	0	0	6	1.72	0	0	"Sus scrofa mitogen-activated protein kinase-activated protein kinase 3 (MAPKAPK3) mRNA, complete cds /cds=p(158,1312) /gb=FJ436391 /gi=217314896 /ug=Ssc.3033 /len=2589"	-	-	-	-
gnl|UG|Ssc#S58313346	0	0	0	0	6	1.8	"PREDICTED: Sus scrofa amyloid beta (A4) precursor protein-binding, family A, member 3 (APBA3), mRNA /cds=p(168,1931) /gb=XM_003123055 /gi=311248361 /ug=Ssc.2499 /len=2076"	GO:0044464//cell part	GO:0005515//protein binding	GO:0043009//chordate embryonic development;GO:0006810//transport;GO:0010467//gene expression;GO:0007267//cell-cell signaling;GO:0007165//signal transduction	gi|311248362|ref|XP_003123103.1|/0/PREDICTED: amyloid beta A4 precursor protein-binding family A member 3-like [Sus scrofa]
gnl|UG|Ssc#S35165485	9	2.59	7	2	9	2.7	"Sus scrofa mRNA, clone:UTR010023G12, expressed in uterus /gb=AK240036 /gi=115554241 /ug=Ssc.6221 /len=1953"	GO:0031224//intrinsic to membrane	GO:0003824//catalytic activity;GO:0046914//transition metal ion binding	-	gi|311252106|ref|XP_003124933.1|/0/PREDICTED: e3 ubiquitin-protein ligase RNF149-like [Sus scrofa]
gnl|UG|Ssc#S35167807	266	76.58	152	43.45	231	69.42	"Sus scrofa mRNA, clone:OVRM10183A06, expressed in ovary /gb=AK236339 /gi=115551932 /ug=Ssc.1642 /len=2192"	GO:0022624	GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0009894;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|291400329|ref|XP_002716521.1|/0/PREDICTED: proteasome 26S non-ATPase subunit 2 [Oryctolagus cuniculus]
gnl|UG|Ssc#S55320406	281	80.9	613	175.23	477	143.35	"Sus scrofa mRNA, clone:LVR010044A12, expressed in liver /gb=AK345882 /gi=288784466 /ug=Ssc.39366 /len=1779"	GO:0044432//endoplasmic reticulum part;GO:0048770	"GO:0016862//intramolecular oxidoreductase activity, interconverting keto- and enol-groups;GO:0005488//binding;GO:0004620//phospholipase activity;GO:0004175//endopeptidase activity;GO:0015036//disulfide oxidoreductase activity"	GO:0035437//maintenance of protein localization in endoplasmic reticulum;GO:0006915//apoptosis;GO:0019725//cellular homeostasis;GO:0023052//signaling;GO:0006605//protein targeting;GO:0018904;GO:0006487//protein N-linked glycosylation	gi|304365428|ref|NP_001182041.1|/0/protein disulfide-isomerase A3 [Sus scrofa]
gnl|UG|Ssc#S58305292	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa transcription factor Dp-1-like (LOC100518987), partial mRNA /cds=p(1,879) /gb=XM_003131106 /gi=311266584 /ug=Ssc.22253 /len=1873"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	"GO:0012501//programmed cell death;GO:0009888//tissue development;GO:0006355//regulation of transcription, DNA-dependent;GO:0051320;GO:0051318//G1 phase"	"gi|311266585|ref|XP_003131154.1|/7.43685e-131/PREDICTED: transcription factor Dp-1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S35166512	2	0.58	0	0	4	1.2	"Sus scrofa mRNA, clone:LVRM10070C08, expressed in liver /gb=AK233024 /gi=115553226 /ug=Ssc.20785 /len=1901"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0044421//extracellular region part	GO:0033764;GO:0005515//protein binding;GO:0005539//glycosaminoglycan binding	GO:0043062//extracellular structure organization;GO:0035336//long-chain fatty-acyl-CoA metabolic process;GO:0006641//triglyceride metabolic process;GO:0008202//steroid metabolic process;GO:0010810	gi|75060932|sp|Q5E9H7.1|DHB12_BOVIN/9.15185e-169/RecName: Full=Estradiol 17-beta-dehydrogenase 12; AltName: Full=17-beta-hydroxysteroid dehydrogenase 12; Short=17-beta-HSD 12; AltName: Full=3-ketoacyl-CoA reductase; Short=KAR
gnl|UG|Ssc#S35172109	79	22.74	200	57.17	14	4.21	"Sus scrofa mRNA, clone:ITT010052E07, expressed in intestine /gb=AK231384 /gi=115547726 /ug=Ssc.4855 /len=1020"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0008168//methyltransferase activity	-	gi|194042842|ref|XP_001929190.1|/5.95209e-125/PREDICTED: catechol O-methyltransferase domain-containing protein 1 [Sus scrofa]
gnl|UG|Ssc#S35172795	208	59.88	314	89.76	189	56.8	"Sus scrofa mRNA, clone:AMP010092H06, expressed in alveolar macrophage /gb=AK231095 /gi=115547040 /ug=Ssc.85115 /len=2698"	GO:0000139//Golgi membrane;GO:0005626//insoluble fraction	"GO:0043169//cation binding;GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0051234//establishment of localization;GO:0006796//phosphate metabolic process	gi|19424180|ref|NP_598212.1|/1.14485e-130/mps one binder kinase activator-like 3 [Rattus norvegicus]
gnl|UG|Ssc#S46877601	69	19.87	178	50.88	30	9.02	"PREDICTED: Sus scrofa ADP-ribosylarginine hydrolase, transcript variant 1 (ADPRH), mRNA /cds=p(437,1513) /gb=XM_001927596 /gi=311269952 /ug=Ssc.44695 /len=3834"	-	"GO:0046872//metal ion binding;GO:0016799//hydrolase activity, hydrolyzing N-glycosyl compounds"	GO:0006464//protein modification process	gi|194041094|ref|XP_001927645.1|/0/PREDICTED: [Protein ADP-ribosylarginine] hydrolase isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58312061	24	6.91	35	10	17	5.11	"PREDICTED: Sus scrofa uncharacterized protein C7orf43 homolog (LOC100510955), mRNA /cds=p(1,1743) /gb=XM_003124338 /gi=311250982 /ug=Ssc.29359 /len=1749"	-	-	-	gi|311250983|ref|XP_003124386.1|/0/PREDICTED: uncharacterized protein C7orf43 homolog [Sus scrofa]
gnl|UG|Ssc#S35170634	4	1.15	5	1.43	2	0.6	"Sus scrofa mRNA, clone:LNG010041F07, expressed in lung /gb=AK231881 /gi=115549205 /ug=Ssc.55115 /len=1282"	GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|94966813|ref|NP_001035596.1|/2.29187e-90/RRP15-like protein [Bos taurus]
gnl|UG|Ssc#S58300980	0	0	0	0	0	0	"PREDICTED: Sus scrofa sodium/hydrogen exchanger 6-like, transcript variant 1 (LOC100522296), mRNA /cds=p(1,2109) /gb=XM_003135421 /gi=311277031 /ug=Ssc.72300 /len=2109"	GO:0031224//intrinsic to membrane;GO:0005769//early endosome;GO:0010008//endosome membrane;GO:0042598//vesicular fraction	GO:0005451//monovalent cation:hydrogen antiporter activity	GO:0055067;GO:0030001//metal ion transport	gi|311277032|ref|XP_003135469.1|/0/PREDICTED: sodium/hydrogen exchanger 6-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S20948462	0	0	2	0.57	0	0	"AJ660185 KN277 Sus scrofa cDNA clone C0005218_O14, mRNA sequence /clone=C0005218_O14 /gb=AJ660185 /gi=49344330 /ug=Ssc.29515 /len=639"	-	-	-	-
gnl|UG|Ssc#S17524658	3	0.86	0	0	2	0.6	"BX673799 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0040.d.14 5prim, mRNA sequence /clone=scac0040.d.14 /clone_end=5' /gb=BX673799 /gi=90244310 /ug=Ssc.93805 /len=748"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0008509//anion transmembrane transporter activity;GO:0000166//nucleotide binding	GO:0009987//cellular process;GO:0006820//anion transport;GO:0008152//metabolic process	"gi|119598716|gb|EAW78310.1|/8.02141e-97/ATP-binding cassette, sub-family C (CFTR/MRP), member 5, isoform CRA_e [Homo sapiens]"
gnl|UG|Ssc#S35173953	20	5.76	4	1.14	9	2.7	"Sus scrofa mRNA, clone:OVR010042G05, expressed in ovary /gb=AK234315 /gi=115545882 /ug=Ssc.11178 /len=2494"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0005488//binding;GO:0034062//RNA polymerase activity;GO:0016251//general RNA polymerase II transcription factor activity	"GO:0006355//regulation of transcription, DNA-dependent"	gi|157074102|ref|NP_001096763.1|/2.05001e-118/mediator of RNA polymerase II transcription subunit 20 [Bos taurus]
gnl|UG|Ssc#S35170540	12	3.45	0	0	7	2.1	"Sus scrofa mRNA, clone:OVRM10058H05, expressed in ovary /gb=AK235220 /gi=115549299 /ug=Ssc.11188 /len=1616"	-	-	-	-
gnl|UG|Ssc#S58306017	0	0	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein C1orf26-like (LOC100518924), mRNA /cds=p(1,2826) /gb=XM_003130384 /gi=311264979 /ug=Ssc.5478 /len=3679"	-	-	-	gi|311264980|ref|XP_003130432.1|/0/PREDICTED: uncharacterized protein C1orf26-like [Sus scrofa]
gnl|UG|Ssc#S58313383	0	0	8	2.29	0	0	"PREDICTED: Sus scrofa MAP kinase-interacting serine/threonine-protein kinase 2-like (LOC100513909), mRNA /cds=p(1,1140) /gb=XM_003123019 /gi=311248286 /ug=Ssc.19464 /len=1380"	-	GO:0043169//cation binding;GO:0004672//protein kinase activity;GO:0032559	GO:0035556//intracellular signal transduction;GO:0006464//protein modification process;GO:0006412//translation;GO:0006796//phosphate metabolic process	gi|311248287|ref|XP_003123067.1|/1.03894e-168/PREDICTED: MAP kinase-interacting serine/threonine-protein kinase 2-like [Sus scrofa]
gnl|UG|Ssc#S55327111	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVR010053B10, expressed in ovary /gb=AK347540 /gi=288576945 /ug=Ssc.20313 /len=3323"	GO:0031981//nuclear lumen;GO:0070603//SWI/SNF-type complex	GO:0003712//transcription cofactor activity;GO:0005515//protein binding	"GO:0048731;GO:0006355//regulation of transcription, DNA-dependent;GO:0006338//chromatin remodeling"	gi|297691800|ref|XP_002823254.1|/0/PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like isoform 1 [Pongo abelii]
gnl|UG|Ssc#S55319877	4	1.15	0	0	4	1.2	"Sus scrofa mRNA, clone:THY010104H02, expressed in thymus /gb=AK351888 /gi=288785007 /ug=Ssc.39552 /len=2240"	"GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton;GO:0000775//chromosome, centromeric region;GO:0044444//cytoplasmic part"	GO:0003676//nucleic acid binding;GO:0003774//motor activity;GO:0032559	GO:0006259//DNA metabolic process;GO:0000087//M phase of mitotic cell cycle;GO:0007017//microtubule-based process;GO:0007599//hemostasis	gi|205815452|sp|A6QPL4.2|KIF22_BOVIN/0/RecName: Full=Kinesin-like protein KIF22
gnl|UG|Ssc#S55321002	22	6.33	11	3.14	10	3.01	"Sus scrofa mRNA, clone:LNG010036B12, expressed in lung /gb=AK345485 /gi=288783870 /ug=Ssc.54826 /len=2256"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0004721//phosphoprotein phosphatase activity	GO:0006464//protein modification process;GO:0006796//phosphate metabolic process;GO:0022402//cell cycle process	gi|301755942|ref|XP_002913810.1|/0/PREDICTED: protein phosphatase 1G-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S39996709	2	0.58	3	0.86	6	1.8	"recc2813c_b19.y1 ecc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW091618 /gi=181222745 /ug=Ssc.82768 /len=583"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0030295//protein kinase activator activity;GO:0004672//protein kinase activity;GO:0032559;GO:0019900//kinase binding	GO:0001934//positive regulation of protein phosphorylation;GO:0033673//negative regulation of kinase activity;GO:0050851//antigen receptor-mediated signaling pathway;GO:0031294;GO:0006915//apoptosis;GO:0050688//regulation of defense response to virus;GO:0045860//positive regulation of protein kinase activity;GO:0006935//chemotaxis	"gi|119574017|gb|EAW53632.1|/4.24814e-17/hCG2003971, isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S58305002	10	2.88	13	3.72	4	1.2	"PREDICTED: Sus scrofa N-acetylglucosaminidase, alpha (NAGLU), mRNA /cds=p(9,2243) /gb=XM_003131388 /gi=311267178 /ug=Ssc.44812 /len=2475"	GO:0000323//lytic vacuole	GO:0015929//hexosaminidase activity	GO:0042471//ear morphogenesis;GO:0042462//eye photoreceptor cell development;GO:0021695//cerebellar cortex development;GO:0007626//locomotory behavior;GO:0007033//vacuole organization	gi|311267179|ref|XP_003131436.1|/0/PREDICTED: alpha-N-acetylglucosaminidase-like [Sus scrofa]
gnl|UG|Ssc#S55324733	12	3.45	14	4	9	2.7	"Sus scrofa mRNA, clone:ADR010035F06, expressed in adrenal gland /gb=AK343323 /gi=288780139 /ug=Ssc.23177 /len=1260"	-	-	-	-
gnl|UG|Ssc#S58303870	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa SLIT and NTRK-like family, member 3, transcript variant 1 (SLITRK3), mRNA /cds=p(1,2055) /gb=XM_003132527 /gi=311269632 /ug=Ssc.92712 /len=2995"	GO:0016604//nuclear body;GO:0030141//stored secretory granule	GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding	GO:0051291//protein heterooligomerization;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0014706//striated muscle tissue development;GO:0010033//response to organic substance;GO:0031346//positive regulation of cell projection organization;GO:0001824//blastocyst development;GO:0022402//cell cycle process;GO:0006915//apoptosis;GO:0045595//regulation of cell differentiation;GO:0048232//male gamete generation;GO:0051260//protein homooligomerization;GO:0001776//leukocyte homeostasis	"gi|311269633|ref|XP_003132575.1|/0/PREDICTED: SLIT and NTRK-like family, member 3 isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S58307656	9	2.59	2	0.57	4	1.2	"PREDICTED: Sus scrofa cytoplasmic dynein 1 heavy chain 1-like (LOC100517352), mRNA /cds=p(1,1566) /gb=XM_003128732 /gi=311261621 /ug=Ssc.9264 /len=1791"	GO:0030286//dynein complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0003774//motor activity;GO:0016887//ATPase activity;GO:0032559	GO:0000278//mitotic cell cycle;GO:0022402//cell cycle process;GO:0007017//microtubule-based process;GO:0051234//establishment of localization;GO:0022618//ribonucleoprotein complex assembly	gi|311261622|ref|XP_003128780.1|/0/PREDICTED: cytoplasmic dynein 1 heavy chain 1-like [Sus scrofa]
gnl|UG|Ssc#S55273694	0	0	7	2	0	0	"FS669928 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10081D11 5', mRNA sequence /clone=HTMT10081D11 /clone_end=5' /gb=FS669928 /gi=288271951 /ug=Ssc.93057 /len=468"	GO:0016604//nuclear body;GO:0030529//ribonucleoprotein complex	GO:0001099	GO:0007050//cell cycle arrest;GO:0033523//histone H2B ubiquitination;GO:0033554//cellular response to stress;GO:0006513//protein monoubiquitination	gi|194227075|ref|XP_001495186.2|/1.33752e-30/PREDICTED: WW domain containing adaptor with coiled-coil [Equus caballus]
gnl|UG|Ssc#S26721525	17	4.89	5	1.43	10	3.01	"AJ957609 KN404_2 Sus scrofa cDNA clone C0007749a05 3', mRNA sequence /clone=C0007749a05 /clone_end=3' /gb=AJ957609 /gi=74374425 /ug=Ssc.95093 /len=829"	-	-	-	-
gnl|UG|Ssc#S35168908	20	5.76	6	1.72	13	3.91	"Sus scrofa mRNA, clone:OVRM10127C05, expressed in ovary /gb=AK235937 /gi=115550862 /ug=Ssc.37239 /len=2037"	GO:0044424//intracellular part	"GO:0008135//translation factor activity, nucleic acid binding;GO:0004871//signal transducer activity"	GO:0006412//translation;GO:0015031//protein transport	gi|311265130|ref|XP_003130500.1|/0/PREDICTED: ligatin-like [Sus scrofa]
gnl|UG|Ssc#S46879207	106	30.52	71	20.3	79	23.74	"PREDICTED: Sus scrofa ras-related protein Rab-21-like (LOC100152009), mRNA /cds=p(81,749) /gb=XM_001925059 /gi=311255939 /ug=Ssc.41312 /len=4444"	GO:0032155;GO:0005769//early endosome;GO:0012506//vesicle membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0006810//transport;GO:0035556//intracellular signal transduction;GO:0009207	gi|296470701|gb|DAA12816.1|/2.08162e-111/ras-related protein Rab-21-like [Bos taurus]
gnl|UG|Ssc#S6003356	13	3.74	21	6	13	3.91	"143606 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BE235963 /gi=9020681 /ti=448048673 /ug=Ssc.3536 /len=287"	-	-	-	-
gnl|UG|Ssc#S31108049	2	0.58	0	0	0	0	"1516683 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY411887 /gi=87213190 /ug=Ssc.87873 /len=740"	"GO:0015629//actin cytoskeleton;GO:0070461//SAGA-type complex;GO:0000775//chromosome, centromeric region;GO:0030017//sarcomere"	GO:0003712//transcription cofactor activity;GO:0004468//lysine N-acetyltransferase activity;GO:0016538//cyclin-dependent protein kinase regulator activity;GO:0019900//kinase binding	"GO:0032868//response to insulin stimulus;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006474//N-terminal protein amino acid acetylation;GO:0006352//transcription initiation, DNA-dependent;GO:0008283//cell proliferation;GO:0000079//regulation of cyclin-dependent protein kinase activity;GO:0022402//cell cycle process;GO:0051704;GO:0016573//histone acetylation"	"gi|297671896|ref|XP_002814062.1|/1.00459e-140/PREDICTED: histone acetyltransferase KAT2B-like, partial [Pongo abelii]"
gnl|UG|Ssc#S58305712	9	2.59	2	0.57	9	2.7	"PREDICTED: Sus scrofa WD40 repeat-containing protein SMU1-like (LOC100511830), mRNA /cds=p(81,1622) /gb=XM_003130681 /gi=311265602 /ug=Ssc.41567 /len=2085"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|84370185|ref|NP_001033662.1|/0/WD40 repeat-containing protein SMU1 [Bos taurus]
gnl|UG|Ssc#S23757940	0	0	3	0.86	0	0	"1115050 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN115559 /gi=59809819 /ug=Ssc.48799 /len=858"	-	-	-	-
gnl|UG|Ssc#S40198684	7457	2146.91	16742	4785.68	5665	1702.48	"rjej16b_i21.y1 jej Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW293591 /gi=182479732 /ug=Ssc.80890 /len=427"	-	-	-	gi|297294711|ref|XP_002804494.1|/9.48636e-10/PREDICTED: hypothetical protein LOC698789 [Macaca mulatta]
gnl|UG|Ssc#S43509673	5	1.44	0	0	9	2.7	"Sus scrofa pre-B-cell leukemia homeobox 2 pseudogene 1 (PBX2P1), mRNA /cds=p(270,1562) /gb=NM_001123157 /gi=178056656 /ug=Ssc.20001 /len=3191"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	GO:0003002//regionalization;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0035108//limb morphogenesis	"gi|301788548|ref|XP_002929693.1|/1.15626e-177/PREDICTED: pre-B-cell leukemia transcription factor 2-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S42607004	5	1.44	0	0	0	0	"Sus scrofa acetyl-CoA carboxylase alpha (ACACA) mRNA, complete cds /cds=p(61,7101) /gb=EU168399 /gi=159895417 /ug=Ssc.16018 /len=7382"	-	-	-	-
gnl|UG|Ssc#S58314936	4	1.15	7	2	0	0	"PREDICTED: Sus scrofa talin-2-like (LOC100520286), mRNA /cds=p(1,7632) /gb=XM_003121468 /gi=311244622 /ug=Ssc.4809 /len=7632"	GO:0005856//cytoskeleton;GO:0005924//cell-substrate adherens junction;GO:0031252//cell leading edge	GO:0008092//cytoskeletal protein binding;GO:0005102//receptor binding;GO:0005198//structural molecule activity	GO:0034329//cell junction assembly;GO:0007010//cytoskeleton organization	gi|311244623|ref|XP_003121516.1|/0/PREDICTED: talin-2-like [Sus scrofa]
gnl|UG|Ssc#S16833759	2	0.58	14	4	0	0	"Sus scrofa tnnt1 mRNA for troponin T slow type isoform sTnT1, complete cds /cds=p(10,798) /gb=AB118908 /gi=34393189 /ug=Ssc.7535 /len=860"	GO:0005865//striated muscle thin filament	GO:0008092//cytoskeletal protein binding	GO:0006937//regulation of muscle contraction;GO:0006941//striated muscle contraction	gi|34393192|dbj|BAC82460.1|/1.43566e-62/troponin T slow type isoform sTnT2 [Sus scrofa]
gnl|UG|Ssc#S58309447	221	63.63	229	65.46	106	31.86	"PREDICTED: Sus scrofa CCR4-NOT transcription complex, subunit 1 (CNOT1), mRNA /cds=p(174,7301) /gb=XM_003126952 /gi=311257189 /ug=Ssc.3727 /len=7634"	GO:0044444//cytoplasmic part	GO:0005488//binding	"GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;GO:0010467//gene expression"	gi|311257190|ref|XP_003127000.1|/0/PREDICTED: CCR4-NOT transcription complex subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S18377190	0	0	3	0.86	0	0	"921583 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK457299 /gi=40828580 /ug=Ssc.6374 /len=875"	-	-	-	-
gnl|UG|Ssc#S35171046	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:LNG010019D12, expressed in lung /gb=AK231751 /gi=115548793 /ug=Ssc.6939 /len=2540"	GO:0032156;GO:0000776//kinetochore;GO:0032155;GO:0015630//microtubule cytoskeleton	GO:0032561	GO:0051704;GO:0009987//cellular process	gi|74008208|ref|XP_864332.1|/0/PREDICTED: similar to Septin-6 isoform 2 [Canis familiaris]
gnl|UG|Ssc#S35173225	158	45.49	409	116.91	220	66.12	"Sus scrofa mRNA, clone:OVR010063E11, expressed in ovary /gb=AK234448 /gi=115546610 /ug=Ssc.2110 /len=2179"	GO:0005875//microtubule associated complex	GO:0005488//binding	GO:0007017//microtubule-based process	gi|77735747|ref|NP_001029572.1|/0/actin-related protein 10 [Bos taurus]
gnl|UG|Ssc#S58308866	5	1.44	5	1.43	4	1.2	"PREDICTED: Sus scrofa pleckstrin homology domain containing, family G (with RhoGef domain) member 5 (PLEKHG5), mRNA /cds=p(1,3282) /gb=XM_003127533 /gi=311258369 /ug=Ssc.95825 /len=3282"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0005488//binding;GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0060089	GO:0016477//cell migration;GO:0006917//induction of apoptosis;GO:0007264//small GTPase mediated signal transduction;GO:0019222//regulation of metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009966//regulation of signal transduction;GO:0007249//I-kappaB kinase/NF-kappaB cascade	gi|311258370|ref|XP_003127581.1|/0/PREDICTED: pleckstrin homology domain-containing family G member 5-like [Sus scrofa]
gnl|UG|Ssc#S46876076	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin-like (LOC100157552), mRNA /cds=p(1,1713) /gb=XM_001928784 /gi=311274368 /ug=Ssc.25534 /len=2284"	GO:0005929//cilium;GO:0015630//microtubule cytoskeleton;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0032559	GO:0006810//transport;GO:0051705;GO:0032401//establishment of melanosome localization;GO:0045137//development of primary sexual characteristics;GO:0044267//cellular protein metabolic process;GO:0009855//determination of bilateral symmetry;GO:0021543//pallium development;GO:0003143//embryonic heart tube morphogenesis;GO:0042384//cilium assembly;GO:0007281//germ cell development;GO:0060295;GO:0043954//cellular component maintenance;GO:0021544//subpallium development;GO:0007606//sensory perception of chemical stimulus	gi|311274369|ref|XP_001928819.2|/0/PREDICTED: McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin-like [Sus scrofa]
gnl|UG|Ssc#S58305698	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa BMP and activin membrane-bound inhibitor homolog (LOC100516690), mRNA /cds=p(323,1105) /gb=XM_003130699 /gi=311265631 /ug=Ssc.9537 /len=1801"	GO:0044424//intracellular part;GO:0031224//intrinsic to membrane	GO:0001664//G-protein-coupled receptor binding;GO:0005160//transforming growth factor beta receptor binding	"GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0001837//epithelial to mesenchymal transition;GO:0065008;GO:0043393//regulation of protein binding;GO:0006355//regulation of transcription, DNA-dependent;GO:0008283//cell proliferation;GO:0048870//cell motility;GO:0035411//catenin import into nucleus;GO:0030177//positive regulation of Wnt receptor signaling pathway"	gi|311265632|ref|XP_003130747.1|/4.91489e-140/PREDICTED: BMP and activin membrane-bound inhibitor homolog [Sus scrofa]
gnl|UG|Ssc#S58303237	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa ligand-dependent corepressor-like (LOC100519220), mRNA /cds=p(485,1705) /gb=XM_003133157 /gi=311271690 /ug=Ssc.95128 /len=2201"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0004871//signal transducer activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0023052//signaling	gi|14017807|dbj|BAB47424.1|/0/KIAA1795 protein [Homo sapiens]
gnl|UG|Ssc#S46879638	43	12.38	41	11.72	30	9.02	"PREDICTED: Sus scrofa cyclic AMP-dependent transcription factor ATF-6 alpha-like (LOC100158076), mRNA /cds=p(1,2391) /gb=XM_001924512 /gi=311253945 /ug=Ssc.41748 /len=2803"	GO:0031224//intrinsic to membrane;GO:0031981//nuclear lumen;GO:0031090//organelle membrane;GO:0012505//endomembrane system	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	"GO:0044267//cellular protein metabolic process;GO:0006355//regulation of transcription, DNA-dependent;GO:0030968//endoplasmic reticulum unfolded protein response"	gi|311253946|ref|XP_001924547.2|/0/PREDICTED: cyclic AMP-dependent transcription factor ATF-6 alpha-like [Sus scrofa]
gnl|UG|Ssc#S58304042	7	2.02	0	0	7	2.1	"PREDICTED: Sus scrofa transmembrane protein 111-like (LOC100522518), mRNA /cds=p(202,987) /gb=XM_003132360 /gi=311269248 /ug=Ssc.17618 /len=2042"	GO:0005798//Golgi-associated vesicle;GO:0031224//intrinsic to membrane	-	GO:0048856//anatomical structure development;GO:0043954//cellular component maintenance	"gi|148667067|gb|EDK99483.1|/3.84205e-136/mCG132973, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S35164476	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:MLN010055C01, expressed in mesenteric lymph node /gb=AK233865 /gi=115555250 /ug=Ssc.52488 /len=1666"	-	-	-	-
gnl|UG|Ssc#S35169719	12	3.45	4	1.14	15	4.51	"Sus scrofa mRNA, clone:OVRM10096C01, expressed in ovary /gb=AK235599 /gi=115550120 /ug=Ssc.2894 /len=1491"	-	-	-	gi|281354236|gb|EFB29820.1|/0/hypothetical protein PANDA_008452 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20937706	4	1.15	5	1.43	7	2.1	"AJ649429 CSEQRAN19 Sus scrofa cDNA clone C0003272_H09, mRNA sequence /clone=C0003272_H09 /gb=AJ649429 /gi=49326274 /ug=Ssc.85598 /len=562"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0031647//regulation of protein stability	gi|149016683|gb|EDL75869.1|/3.40114e-73/rCG22622 [Rattus norvegicus]
gnl|UG|Ssc#S58311523	164	47.22	69	19.72	61	18.33	"PREDICTED: Sus scrofa mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4), mRNA /cds=p(37,1281) /gb=XM_003124871 /gi=311252091 /ug=Ssc.21192 /len=1538"	-	-	-	gi|311252092|ref|XP_003124919.1|/0/PREDICTED: mitogen-activated protein kinase kinase kinase kinase 4-like [Sus scrofa]
gnl|UG|Ssc#S55326004	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10222A04, expressed in ovary /gb=AK348647 /gi=288778822 /ug=Ssc.5576 /len=3046"	GO:0005626//insoluble fraction;GO:0010008//endosome membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0046872//metal ion binding;GO:0032561;GO:0005515//protein binding;GO:0032559	GO:0030036//actin cytoskeleton organization;GO:0009207;GO:0007599//hemostasis;GO:0016197//endosome transport	gi|114051716|ref|NP_001039896.1|/0/EH domain-containing protein 2 [Bos taurus]
gnl|UG|Ssc#S35166780	6	1.73	4	1.14	0	0	"Sus scrofa mRNA, clone:SPL010027C01, expressed in spleen /gb=AK237351 /gi=115552959 /ug=Ssc.54035 /len=1271"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0030117//membrane coat;GO:0012506//vesicle membrane;GO:0044431//Golgi apparatus part	GO:0005488//binding;GO:0022892	GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0015031//protein transport	gi|297675794|ref|XP_002815844.1|/2.48803e-105/PREDICTED: AP-3 complex subunit sigma-1-like [Pongo abelii]
gnl|UG|Ssc#S35169797	6	1.73	10	2.86	4	1.2	"Sus scrofa mRNA, clone:LVR010010H09, expressed in liver /gb=AK232277 /gi=115550042 /ug=Ssc.19588 /len=1162"	GO:0000267//cell fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0030234//enzyme regulator activity	GO:0061061;GO:0006950//response to stress	gi|301771450|ref|XP_002921139.1|/5.0805e-78/PREDICTED: heat shock protein beta-2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46877187	2	0.58	2	0.57	4	1.2	"PREDICTED: Sus scrofa cytosolic IMP-GMP specific 5-nucleotidase (LOC100154612), mRNA /cds=p(26,1714) /gb=XM_001929278 /gi=194041954 /ug=Ssc.50679 /len=2946"	GO:0044444//cytoplasmic part	GO:0008252//nucleotidase activity;GO:0043169//cation binding	GO:0006163//purine nucleotide metabolic process;GO:0009112;GO:0006796//phosphate metabolic process	gi|256665234|ref|NP_001157835.1|/0/cytosolic purine 5'-nucleotidase isoform 1 [Mus musculus]
gnl|UG|Ssc#S58308478	3	0.86	3	0.86	11	3.31	"PREDICTED: Sus scrofa adenylate kinase 5 (AK5), mRNA /cds=p(252,2006) /gb=XM_003127921 /gi=311259168 /ug=Ssc.8267 /len=3204"	GO:0005815//microtubule organizing center	"GO:0016776//phosphotransferase activity, phosphate group as acceptor;GO:0019205//nucleobase, nucleoside, nucleotide kinase activity;GO:0032559;GO:0019887//protein kinase regulator activity"	GO:0009180;GO:0019222//regulation of metabolic process;GO:0009205;GO:0023052//signaling;GO:0006221//pyrimidine nucleotide biosynthetic process;GO:0016310//phosphorylation;GO:0009183	gi|311259169|ref|XP_003127969.1|/0/PREDICTED: adenylate kinase isoenzyme 5 [Sus scrofa]
gnl|UG|Ssc#S46878839	5	1.44	11	3.14	49	14.73	"PREDICTED: Sus scrofa uncharacterized protein C14orf43-like (LOC100153684), mRNA /cds=p(1,2121) /gb=XM_001926184 /gi=311261322 /ug=Ssc.78844 /len=2121"	GO:0031981//nuclear lumen	-	-	gi|311261323|ref|XP_001926219.2|/0/PREDICTED: uncharacterized protein C14orf43-like [Sus scrofa]
gnl|UG|Ssc#S58311407	33	9.5	8	2.29	50	15.03	"PREDICTED: Sus scrofa mannosyl-oligosaccharide glucosidase-like (LOC100513204), mRNA /cds=p(1,2520) /gb=XM_003124990 /gi=311252325 /ug=Ssc.27305 /len=2736"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0015926//glucosidase activity	GO:0006487//protein N-linked glycosylation	gi|311252326|ref|XP_003125038.1|/0/PREDICTED: mannosyl-oligosaccharide glucosidase-like [Sus scrofa]
gnl|UG|Ssc#S58312343	0	0	7	2	0	0	"PREDICTED: Sus scrofa acidic fibroblast growth factor (AFGF), mRNA /cds=p(16,483) /gb=XM_003124010 /gi=311250405 /ug=Ssc.16246 /len=664"	-	-	-	-
gnl|UG|Ssc#S19544740	14	4.03	16	4.57	14	4.21	"950012 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN160793 /gi=46175223 /ug=Ssc.41173 /len=768"	-	-	-	-
gnl|UG|Ssc#S46878902	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa chromodomain helicase DNA binding protein 2 (CHD2), mRNA /cds=p(570,6056) /gb=XM_001926358 /gi=311261208 /ug=Ssc.18411 /len=6606"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427	GO:0003678//DNA helicase activity;GO:0003676//nucleic acid binding;GO:0032559	"GO:0006355//regulation of transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|194038394|ref|XP_001926393.1|/0/PREDICTED: chromodomain-helicase-DNA-binding protein 2 [Sus scrofa]
gnl|UG|Ssc#S58310850	4	1.15	2	0.57	3	0.9	"PREDICTED: Sus scrofa ribonucleases P/MRP protein subunit POP1-like (LOC100524933), mRNA /cds=p(57,3068) /gb=XM_003125555 /gi=311253572 /ug=Ssc.87857 /len=3068"	GO:0030681;GO:0005732//small nucleolar ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0004549//tRNA-specific ribonuclease activity;GO:0005515//protein binding	GO:0008033//tRNA processing	gi|311253573|ref|XP_003125603.1|/0/PREDICTED: ribonucleases P/MRP protein subunit POP1-like [Sus scrofa]
gnl|UG|Ssc#S46879753	7	2.02	2	0.57	6	1.8	"PREDICTED: Sus scrofa probable ubiquitin-conjugating enzyme E2 W-like (LOC100152196), mRNA /cds=p(2,544) /gb=XM_001927665 /gi=311253718 /ug=Ssc.13189 /len=1700"	GO:0043234//protein complex	GO:0022892;GO:0019787//small conjugating protein ligase activity;GO:0032559	GO:0051707//response to other organism;GO:0016567//protein ubiquitination;GO:0048193//Golgi vesicle transport;GO:0015031//protein transport	gi|301782465|ref|XP_002926648.1|/3.53692e-92/PREDICTED: probable ubiquitin-conjugating enzyme E2 W-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58304677	74	21.3	31	8.86	60	18.03	"PREDICTED: Sus scrofa AP-1 complex subunit beta-1-like (LOC100517121), mRNA /cds=p(159,3014) /gb=XM_003131718 /gi=311267848 /ug=Ssc.49596 /len=5510"	GO:0030119//AP-type membrane coat adaptor complex;GO:0044431//Golgi apparatus part;GO:0030139//endocytic vesicle;GO:0012505//endomembrane system;GO:0030136//clathrin-coated vesicle	GO:0005515//protein binding;GO:0022892	GO:0007267//cell-cell signaling;GO:0006901//vesicle coating;GO:0015031//protein transport;GO:0007173//epidermal growth factor receptor signaling pathway;GO:0050688//regulation of defense response to virus;GO:0006935//chemotaxis	gi|311267849|ref|XP_003131766.1|/0/PREDICTED: AP-1 complex subunit beta-1-like [Sus scrofa]
gnl|UG|Ssc#S35168560	3	0.86	2	0.57	4	1.2	"Sus scrofa mRNA, clone:LVR010074G07, expressed in liver /gb=AK232563 /gi=115551130 /ug=Ssc.49780 /len=1613"	-	-	-	-
gnl|UG|Ssc#S58302288	4	1.15	4	1.14	0	0	"PREDICTED: Sus scrofa ADAM metallopeptidase domain 19 (ADAM19), mRNA /cds=p(122,2851) /gb=XM_003134106 /gi=311274030 /ug=Ssc.5434 /len=2851"	GO:0031224//intrinsic to membrane	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0019904//protein domain specific binding	GO:0033619//membrane protein proteolysis;GO:0048513//organ development	gi|311274031|ref|XP_003134154.1|/0/PREDICTED: disintegrin and metalloproteinase domain-containing protein 19-like [Sus scrofa]
gnl|UG|Ssc#S58303020	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein C8orf41-like (LOC100526252), mRNA /cds=p(221,1702) /gb=XM_003133376 /gi=311272392 /ug=Ssc.4581 /len=2018"	-	-	-	gi|311272393|ref|XP_003133424.1|/0/PREDICTED: uncharacterized protein C8orf41-like [Sus scrofa]
gnl|UG|Ssc#S58308409	75	21.59	252	72.03	105	31.56	"PREDICTED: Sus scrofa zinc finger, CCHC domain containing 11 (ZCCHC11), mRNA /cds=p(1,4071) /gb=XM_003127988 /gi=311259309 /ug=Ssc.1333 /len=4739"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0070569	GO:0000956//nuclear-transcribed mRNA catabolic process;GO:0002831//regulation of response to biotic stimulus;GO:0043433//negative regulation of transcription factor activity;GO:0010586//miRNA metabolic process;GO:0035196//production of miRNAs involved in gene silencing by miRNA;GO:0032502//developmental process;GO:0032501//multicellular organismal process	gi|311259310|ref|XP_003128036.1|/0/PREDICTED: terminal uridylyltransferase 4-like [Sus scrofa]
gnl|UG|Ssc#S55517374	33	9.5	61	17.44	20	6.01	"Sus scrofa spermatogenesis associated 7 (SPATA7), mRNA /cds=p(132,1862) /gb=NM_001177908 /gi=295444944 /ug=Ssc.47149 /len=2029"	-	-	GO:0050953//sensory perception of light stimulus;GO:0048232//male gamete generation	gi|295444945|ref|NP_001171379.1|/0/spermatogenesis-associated protein 7 [Sus scrofa]
gnl|UG|Ssc#S40124829	21	6.05	64	18.29	26	7.81	"rfty517b_n22.y1 fty Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW219736 /gi=182575683 /ug=Ssc.7420 /len=499"	-	-	-	-
gnl|UG|Ssc#S58304883	13	3.74	4	1.14	2	0.6	"PREDICTED: Sus scrofa cyclin-dependent kinase 12, transcript variant 2 (CDK12), mRNA /cds=p(51,4529) /gb=XM_003131505 /gi=311267421 /ug=Ssc.43854 /len=5064"	GO:0016604//nuclear body;GO:0000307//cyclin-dependent protein kinase holoenzyme complex	GO:0030528//transcription regulator activity;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0006468//protein phosphorylation;GO:0006396//RNA processing;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0009966//regulation of signal transduction	gi|311267422|ref|XP_003131553.1|/0/PREDICTED: cell division protein kinase 12-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S23213205	0	0	2	0.57	0	0	"Sus scrofa clone Clu_32025.scr.msk.p1.Contig4, mRNA sequence /gb=AY609803 /gi=52351373 /ug=Ssc.78773 /len=1789"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0005488//binding;GO:0060089;GO:0001071//nucleic acid binding transcription factor activity;GO:0016491//oxidoreductase activity	"GO:0006952//defense response;GO:0006355//regulation of transcription, DNA-dependent;GO:0050790//regulation of catalytic activity;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0001704//formation of primary germ layer"	"gi|311248624|ref|XP_003123239.1|/0/PREDICTED: evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35168714	15	4.32	20	5.72	22	6.61	"Sus scrofa mRNA, clone:THY010035H12, expressed in thymus /gb=AK238837 /gi=115550976 /ug=Ssc.45541 /len=2050"	-	-	-	gi|146286036|sp|Q2YDE7.2|ARCH_BOVIN/6.45708e-91/RecName: Full=Protein archease; AltName: Full=Protein ZBTB8OS
gnl|UG|Ssc#S17514614	8	2.3	0	0	5	1.5	"BX669183 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0028.l.10 5prim, mRNA sequence /clone=scac0028.l.10 /clone_end=5' /gb=BX669183 /gi=90227657 /ug=Ssc.19940 /len=1094"	GO:0005875//microtubule associated complex;GO:0005819//spindle	-	GO:0031023//microtubule organizing center organization;GO:0007051//spindle organization;GO:0000087//M phase of mitotic cell cycle	gi|297632422|ref|NP_001172095.1|/7.60701e-129/HAUS augmin-like complex subunit 1 [Sus scrofa]
gnl|UG|Ssc#S58314528	15	4.32	2	0.57	8	2.4	"PREDICTED: Sus scrofa phospholipase A2-activating protein (PLAA), mRNA /cds=p(1,2391) /gb=XM_003121873 /gi=311245684 /ug=Ssc.9915 /len=2570"	-	GO:0016004//phospholipase activator activity	GO:0006952//defense response;GO:0023052//signaling;GO:0019637//organophosphate metabolic process	gi|311245685|ref|XP_003121921.1|/0/PREDICTED: phospholipase A-2-activating protein-like [Sus scrofa]
gnl|UG|Ssc#S55305486	2	0.58	0	0	0	0	"FS704459 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010097A01 5', mRNA sequence /clone=PST010097A01 /clone_end=5' /gb=FS704459 /gi=288307789 /ug=Ssc.34228 /len=887"	GO:0005768//endosome;GO:0000323//lytic vacuole;GO:0031982//vesicle;GO:0031672//A band	GO:0032182//small conjugating protein binding;GO:0046914//transition metal ion binding	GO:0006461//protein complex assembly;GO:0006914//autophagy	gi|73965617|ref|XP_537628.2|/2.14094e-141/PREDICTED: similar to neighbor of BRCA1 gene 1 [Canis familiaris]
gnl|UG|Ssc#S58309069	0	0	0	0	0	0	"PREDICTED: Sus scrofa splicing factor, arginine/serine-rich 19-like (LOC100521729), mRNA /cds=p(1,4440) /gb=XM_003127346 /gi=311257960 /ug=Ssc.94814 /len=4677"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	"GO:0006351//transcription, DNA-dependent;GO:0006396//RNA processing"	"gi|311257961|ref|XP_003127394.1|/0/PREDICTED: splicing factor, arginine/serine-rich 19-like [Sus scrofa]"
gnl|UG|Ssc#S58310151	46	13.24	15	4.29	40	12.02	"PREDICTED: Sus scrofa integrin, alpha 7, transcript variant 2 (ITGA7), mRNA /cds=p(1,3432) /gb=XM_003126249 /gi=311255611 /ug=Ssc.2786 /len=3882"	GO:0005887//integral to plasma membrane	GO:0004871//signal transducer activity	GO:0065008;GO:0031589//cell-substrate adhesion;GO:0007166//cell surface receptor linked signaling pathway;GO:0048513//organ development	gi|311255612|ref|XP_003126297.1|/0/PREDICTED: integrin alpha-7-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35172612	4	1.15	0	0	3	0.9	"Sus scrofa mRNA, clone:OVR010093F02, expressed in ovary /gb=AK234596 /gi=115547223 /ug=Ssc.55594 /len=1174"	-	-	-	gi|218664467|ref|NP_001136302.1|/1.88461e-112/complement C1q tumor necrosis factor-related protein 6 [Sus scrofa]
gnl|UG|Ssc#S58314876	33	9.5	11	3.14	23	6.91	"PREDICTED: Sus scrofa centrosomal protein 152kDa (CEP152), mRNA /cds=p(71,1873) /gb=XM_003121522 /gi=311244793 /ug=Ssc.59406 /len=3170"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	-	gi|311244794|ref|XP_003121570.1|/0/PREDICTED: myelin expression factor 2 [Sus scrofa]
gnl|UG|Ssc#S6041708	0	0	0	0	2	0.6	"371555 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BI343412 /gi=15036701 /ti=470949169 /ug=Ssc.80879 /len=596"	GO:0044427;GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0042393//histone binding;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0019904//protein domain specific binding;GO:0003682//chromatin binding	"GO:0045637//regulation of myeloid cell differentiation;GO:0007067//mitosis;GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|296480835|gb|DAA22950.1|/4.33801e-73/l(3)mbt-like [Bos taurus]
gnl|UG|Ssc#S23213146	208	59.88	77	22.01	105	31.56	"Sus scrofa clone Clu_36446.scr.msk.p1.Contig1, mRNA sequence /gb=AY609862 /gi=52351432 /ug=Ssc.6296 /len=1337"	-	GO:0005488//binding	-	gi|311260807|ref|XP_003128541.1|/4.62623e-174/PREDICTED: ubiquitin-like protein 7-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S26721735	4	1.15	0	0	0	0	"AJ957819 KN404_2 Sus scrofa cDNA clone C0007756d15 5', mRNA sequence /clone=C0007756d15 /clone_end=5' /gb=AJ957819 /gi=74374635 /ug=Ssc.36179 /len=886"	-	-	-	-
gnl|UG|Ssc#S35168605	15	4.32	3	0.86	12	3.61	"Sus scrofa mRNA, clone:THY010050E05, expressed in thymus /gb=AK238946 /gi=115551085 /ug=Ssc.71661 /len=1419"	"GO:0005643//nuclear pore;GO:0030134//ER to Golgi transport vesicle;GO:0000775//chromosome, centromeric region;GO:0031090//organelle membrane"	GO:0005488//binding	GO:0006901//vesicle coating;GO:0050658//RNA transport;GO:0007067//mitosis;GO:0048193//Golgi vesicle transport;GO:0015031//protein transport;GO:0006487//protein N-linked glycosylation	gi|149728440|ref|XP_001493649.1|/0/PREDICTED: similar to SEC13-like 1 [Equus caballus]
gnl|UG|Ssc#S58311301	43	12.38	22	6.29	56	16.83	"PREDICTED: Sus scrofa UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2-like (LOC100524195), mRNA /cds=p(254,1243) /gb=XM_003125112 /gi=311252542 /ug=Ssc.5257 /len=2700"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0012505//endomembrane system	GO:0035250//UDP-galactosyltransferase activity	GO:0007606//sensory perception of chemical stimulus;GO:0006935//chemotaxis;GO:0006464//protein modification process	"gi|311252543|ref|XP_003125160.1|/0/PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2-like [Sus scrofa]"
gnl|UG|Ssc#S58307540	0	0	5	1.43	4	1.2	"PREDICTED: Sus scrofa biorientation of chromosomes in cell division 1-like (BOD1L), mRNA /cds=p(95,2107) /gb=XM_003128856 /gi=311261874 /ug=Ssc.42898 /len=2107"	-	GO:0003676//nucleic acid binding	-	gi|311261875|ref|XP_003128904.1|/0/PREDICTED: biorientation of chromosomes in cell division protein 1-like [Sus scrofa]
gnl|UG|Ssc#S44691094	2	0.58	2	0.57	2	0.6	"Sus scrofa prospero-related homeobox 1 (PROX1) mRNA, complete cds /cds=p(1,2214) /gb=EF486324 /gi=150979581 /ug=Ssc.61761 /len=2214"	GO:0043231//intracellular membrane-bounded organelle	GO:0005102//receptor binding;GO:0003712//transcription cofactor activity;GO:0019904//protein domain specific binding;GO:0043565//sequence-specific DNA binding;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity	GO:0001743//optic placode formation;GO:0007015//actin filament organization;GO:0001935//endothelial cell proliferation;GO:0051495//positive regulation of cytoskeleton organization;GO:0021510//spinal cord development;GO:0007090//regulation of S phase of mitotic cell cycle;GO:0001945//lymph vessel development;GO:0055008//cardiac muscle tissue morphogenesis;GO:0043392//negative regulation of DNA binding;GO:0060850;GO:0030916//otic vesicle formation;GO:0045069//regulation of viral genome replication;GO:0032583//regulation of gene-specific transcription;GO:0000904//cell morphogenesis involved in differentiation;GO:0060411//cardiac septum morphogenesis;GO:0046622//positive regulation of organ growth;GO:0045446//endothelial cell differentiation;GO:0010594//regulation of endothelial cell migration;GO:0002088//lens development in camera-type eye;GO:0045165//cell fate commitment;GO:0048514//blood vessel morphogenesis;GO:0043584//nose development;GO:0055003//cardiac myofibril assembly;GO:0030323//respiratory tube development;GO:0010894//negative regulation of steroid biosynthetic process;GO:0000079//regulation of cyclin-dependent protein kinase activity	gi|190360637|ref|NP_001121962.1|/0/prospero homeobox protein 1 [Sus scrofa]
gnl|UG|Ssc#S58301551	2	0.58	4	1.14	0	0	"PREDICTED: Sus scrofa homeobox protein Hox-A1-like (LOC100520162), mRNA /cds=p(1,1011) /gb=XM_003134844 /gi=311275749 /ug=Ssc.24582 /len=2172"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0007411//axon guidance;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0021546;GO:0021548;GO:0003002//regionalization;GO:0021604;GO:0042471//ear morphogenesis	gi|311275750|ref|XP_003134892.1|/2.56882e-162/PREDICTED: homeobox protein Hox-A1-like [Sus scrofa]
gnl|UG|Ssc#S58302419	0	0	4	1.14	6	1.8	"PREDICTED: Sus scrofa vasculin-like (LOC100521344), mRNA /cds=p(937,2418) /gb=XM_003133975 /gi=311273762 /ug=Ssc.12837 /len=3616"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006355//regulation of transcription, DNA-dependent"	gi|311273763|ref|XP_003134023.1|/0/PREDICTED: vasculin-like [Sus scrofa]
gnl|UG|Ssc#S35167268	8	2.3	13	3.72	54	16.23	"Sus scrofa mRNA, clone:OVRM10196E07, expressed in ovary /gb=AK236476 /gi=115552471 /ug=Ssc.1588 /len=1308"	GO:0000267//cell fraction	"GO:0019200//carbohydrate kinase activity;GO:0016773//phosphotransferase activity, alcohol group as acceptor;GO:0032559"	GO:0006041//glucosamine metabolic process;GO:0006050;GO:0006796//phosphate metabolic process	gi|291386599|ref|XP_002709838.1|/0/PREDICTED: N-Acetylglucosamine kinase [Oryctolagus cuniculus]
gnl|UG|Ssc#S55268168	0	0	0	0	3	0.9	"FS676756 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010079H04 5', mRNA sequence /clone=KDN010079H04 /clone_end=5' /gb=FS676756 /gi=288263729 /ug=Ssc.73839 /len=860"	GO:0044424//intracellular part	GO:0016301//kinase activity;GO:0032559	GO:0006796//phosphate metabolic process	gi|198282025|ref|NP_001093852.1|/9.13461e-126/L-fucose kinase [Bos taurus]
gnl|UG|Ssc#S20939389	2311	665.35	2546	727.77	1572	472.43	"AJ651112 CSEQRAN19 Sus scrofa cDNA clone C0003277_F05, mRNA sequence /clone=C0003277_F05 /gb=AJ651112 /gi=49327957 /ug=Ssc.74121 /len=541"	GO:0015935//small ribosomal subunit;GO:0031981//nuclear lumen	GO:0003723//RNA binding;GO:0005198//structural molecule activity;GO:0003824//catalytic activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0008283//cell proliferation	gi|197127111|gb|ACH43609.1|/1.36562e-90/putative 40S ribosomal protein S9 [Taeniopygia guttata]
gnl|UG|Ssc#S58311224	11	3.17	4	1.14	16	4.81	"PREDICTED: Sus scrofa prolyl endopeptidase-like, transcript variant 1 (LOC100526165), mRNA /cds=p(1,2184) /gb=XM_003125176 /gi=311252699 /ug=Ssc.7947 /len=2629"	GO:0044444//cytoplasmic part	GO:0004175//endopeptidase activity	GO:0019538//protein metabolic process	gi|311252700|ref|XP_003125224.1|/0/PREDICTED: prolyl endopeptidase-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58301521	15	4.32	13	3.72	5	1.5	"PREDICTED: Sus scrofa transcriptional activator protein Pur-beta-like (LOC100512641), mRNA /cds=p(1,720) /gb=XM_003134875 /gi=311275810 /ug=Ssc.11789 /len=2587"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030371//translation repressor activity;GO:0003723//RNA binding;GO:0016564//transcription repressor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0005515//protein binding;GO:0043566//structure-specific DNA binding	"GO:0006412//translation;GO:0012501//programmed cell death;GO:0048869;GO:0002682//regulation of immune system process;GO:0006355//regulation of transcription, DNA-dependent"	gi|311275811|ref|XP_003134923.1|/1.03671e-88/PREDICTED: transcriptional activator protein Pur-beta-like [Sus scrofa]
gnl|UG|Ssc#S26711588	0	0	2	0.57	5	1.5	"AJ947672 KN404_1 Sus scrofa cDNA clone C0007735b04 5', mRNA sequence /clone=C0007735b04 /clone_end=5' /gb=AJ947672 /gi=74364488 /ug=Ssc.45726 /len=753"	-	-	-	-
gnl|UG|Ssc#S58305011	8	2.3	2	0.57	5	1.5	"PREDICTED: Sus scrofa pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 (PLEKHH3), mRNA /cds=p(1,2382) /gb=XM_003131382 /gi=311267160 /ug=Ssc.49191 /len=2562"	-	-	-	gi|311267161|ref|XP_003131430.1|/0/PREDICTED: pleckstrin homology domain-containing family H member 3-like [Sus scrofa]
gnl|UG|Ssc#S20938237	0	0	0	0	2	0.6	"AJ649960 CSEQRAN19 Sus scrofa cDNA clone C0003273_P21, mRNA sequence /clone=C0003273_P21 /gb=AJ649960 /gi=49326805 /ug=Ssc.56511 /len=488"	GO:0031981//nuclear lumen;GO:0015934//large ribosomal subunit	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	"gi|149035360|gb|EDL90064.1|/1.9322e-73/rCG57121, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S29989688	2	0.58	0	0	0	0	"PDUts2086F05 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2086F05 5' similar to homologue to ref|NM_013333.2| Homo sapiens epsin 1 (EPN1), mRNA, mRNA sequence /clone=PDUts2086F05 /clone_end=5' /gb=CX064162 /gi=84140304 /ug=Ssc.82851 /len=635"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0005515//protein binding	GO:0016192//vesicle-mediated transport;GO:0007173//epidermal growth factor receptor signaling pathway	gi|194272148|ref|NP_001123543.1|/7.54427e-45/epsin-1 isoform a [Homo sapiens]
gnl|UG|Ssc#S35165057	120	34.55	63	18.01	164	49.29	"Sus scrofa mRNA, clone:PBL010095F11, expressed in periphral blood mononuclear cell /gb=AK237080 /gi=115554669 /ug=Ssc.47417 /len=1236"	GO:0031224//intrinsic to membrane	-	-	gi|311257503|ref|XP_003127154.1|/3.27499e-163/PREDICTED: protein YIF1B-like [Sus scrofa]
gnl|UG|Ssc#S58302585	36	10.36	23	6.57	31	9.32	"PREDICTED: Sus scrofa high density lipoprotein binding protein (HDLBP), mRNA /cds=p(103,4404) /gb=XM_003133811 /gi=311273422 /ug=Ssc.5947 /len=4404"	-	-	-	gi|311273423|ref|XP_003133859.1|/0/PREDICTED: LOW QUALITY PROTEIN: vigilin [Sus scrofa]
gnl|UG|Ssc#S58304182	30	8.64	42	12.01	39	11.72	"PREDICTED: Sus scrofa inositol hexakisphosphate kinase 1 (IP6K1), mRNA /cds=p(306,1631) /gb=XM_003132218 /gi=311268914 /ug=Ssc.22411 /len=4561"	GO:0043231//intracellular membrane-bounded organelle	GO:0051766;GO:0000828//inositol hexakisphosphate kinase activity;GO:0032559	GO:0046488//phosphatidylinositol metabolic process;GO:0006796//phosphate metabolic process	gi|6683115|dbj|BAA13393.2|/0/KIAA0263 protein [Homo sapiens]
gnl|UG|Ssc#S31132900	8	2.3	9	2.57	3	0.9	"1572883 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY436738 /gi=87238041 /ug=Ssc.89481 /len=604"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	GO:0006458//'de novo' protein folding	gi|194228475|ref|XP_001498714.2|/6.53638e-16/PREDICTED: similar to von Hippel-Lindau binding protein 1 [Equus caballus]
gnl|UG|Ssc#S58307102	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa zinc transporter ZIP8-like (LOC100524695), mRNA /cds=p(1,1386) /gb=XM_003129295 /gi=311262762 /ug=Ssc.45257 /len=2964"	GO:0031224//intrinsic to membrane	GO:0046915//transition metal ion transmembrane transporter activity	GO:0006829//zinc ion transport	gi|311262763|ref|XP_003129343.1|/0/PREDICTED: zinc transporter ZIP8-like [Sus scrofa]
gnl|UG|Ssc#S46880062	0	0	0	0	0	0	"PREDICTED: Sus scrofa UPF0431 protein C1orf66 homolog (LOC100152334), mRNA /cds=p(603,2030) /gb=XM_001925086 /gi=311254098 /ug=Ssc.47589 /len=2252"	GO:0031224//intrinsic to membrane	GO:0008173//RNA methyltransferase activity;GO:0008170//N-methyltransferase activity	-	gi|194035977|ref|XP_001925121.1|/0/PREDICTED: UPF0431 protein C1orf66 homolog [Sus scrofa]
gnl|UG|Ssc#S17510399	3813	1097.78	3239	925.86	3281	986.03	"BX665425 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0006.g.06 5prim, mRNA sequence /clone=scag0006.g.06 /clone_end=5' /gb=BX665425 /gi=90233978 /ug=Ssc.31379 /len=945"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0008134//transcription factor binding	"GO:0006810//transport;GO:0051704;GO:0010927;GO:0006351//transcription, DNA-dependent"	gi|73968420|ref|XP_531640.2|/4.51861e-92/PREDICTED: similar to nascent polypeptide-associated complex alpha polypeptide [Canis familiaris]
gnl|UG|Ssc#S55319188	2	0.58	2	0.57	2	0.6	"Sus scrofa mRNA, clone:LVRM10207E02, expressed in liver /gb=AK346504 /gi=288785696 /ug=Ssc.48213 /len=1737"	GO:0043234//protein complex;GO:0044459//plasma membrane part;GO:0005626//insoluble fraction;GO:0030133//transport vesicle;GO:0015630//microtubule cytoskeleton	GO:0008092//cytoskeletal protein binding	-	gi|157428056|ref|NP_001098936.1|/0/beta-2-syntrophin [Bos taurus]
gnl|UG|Ssc#S47626207	10	2.88	8	2.29	14	4.21	"Sus scrofa vacuolar protein sorting 26-like protein B (VP26B) mRNA, complete cds /cds=p(17,1027) /gb=FJ217219 /gi=209361545 /ug=Ssc.20621 /len=2987"	GO:0012505//endomembrane system;GO:0044444//cytoplasmic part	-	GO:0046907//intracellular transport	gi|212549653|ref|NP_001131106.1|/0/vacuolar protein sorting-associated protein 26B [Sus scrofa]
gnl|UG|Ssc#S58309973	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa GTPase KRas-like (LOC100518251), mRNA /cds=p(197,763) /gb=XM_003126427 /gi=311256037 /ug=Ssc.30458 /len=961"	GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0044425//membrane part	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0019904//protein domain specific binding	GO:0043405//regulation of MAP kinase activity;GO:0007010//cytoskeleton organization;GO:0042692//muscle cell differentiation;GO:0051091//positive regulation of transcription factor activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009207;GO:0031960//response to corticosteroid stimulus;GO:0016601//Rac protein signal transduction;GO:0006935//chemotaxis;GO:0007599//hemostasis;GO:0043066//negative regulation of apoptosis;GO:0051705;GO:0002376//immune system process;GO:0008283//cell proliferation;GO:0007632//visual behavior;GO:0000165//MAPKKK cascade;GO:0048168//regulation of neuronal synaptic plasticity;GO:0032770//positive regulation of monooxygenase activity	gi|114645662|ref|XP_528758.2|/2.47942e-85/PREDICTED: similar to K-ras oncogene protein [Pan troglodytes]
gnl|UG|Ssc#S55326249	330	95.01	146	41.73	197	59.2	"Sus scrofa mRNA, clone:OVRM10154H01, expressed in ovary /gb=AK348402 /gi=288778577 /ug=Ssc.16379 /len=2924"	-	-	-	-
gnl|UG|Ssc#S46880171	18	5.18	12	3.43	4	1.2	"PREDICTED: Sus scrofa zinc finger protein 644 (ZNF644), mRNA /cds=p(1,4146) /gb=XM_001927135 /gi=194035753 /ug=Ssc.13844 /len=5659"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|194035754|ref|XP_001927170.1|/0/PREDICTED: zinc finger protein 644-like [Sus scrofa]
gnl|UG|Ssc#S39800601	12	3.45	8	2.29	27	8.11	"rcbe24_k14.y1 cbe Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV895879 /gi=178576769 /ug=Ssc.64806 /len=628"	-	-	-	-
gnl|UG|Ssc#S55321678	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:ITT010036D08, expressed in small intestine /gb=AK345009 /gi=288783194 /ug=Ssc.78403 /len=2287"	-	GO:0005488//binding	-	gi|291411742|ref|XP_002722153.1|/0/PREDICTED: zinc finger protein 709 [Oryctolagus cuniculus]
gnl|UG|Ssc#S29976976	0	0	0	0	2	0.6	"PDUts1117A12 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1117A12 5' similar to homologue to ref|NM_005255.1| Homo sapiens cyclin G associated kinase (GAK), mRNA, mRNA sequence /clone=PDUts1117A12 /clone_end=5' /gb=CV873634 /gi=84127594 /ug=Ssc.50423 /len=618"	GO:0005924//cell-substrate adherens junction;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|296486313|gb|DAA28426.1|/4.85154e-110/cyclin-G-associated kinase [Bos taurus]
gnl|UG|Ssc#S58303129	25	7.2	30	8.58	12	3.61	"PREDICTED: Sus scrofa UBX domain-containing protein 4-like (LOC100525432), mRNA /cds=p(34,1455) /gb=XM_003133268 /gi=311272132 /ug=Ssc.10065 /len=2448"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|311272133|ref|XP_003133316.1|/0/PREDICTED: UBX domain-containing protein 4-like [Sus scrofa]
gnl|UG|Ssc#S58309166	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa coiled-coil domain-containing protein 8-like (LOC100513356), mRNA /cds=p(1,1416) /gb=XM_003127233 /gi=311257760 /ug=Ssc.9419 /len=2142"	GO:0016020//membrane	-	-	gi|311257761|ref|XP_003127281.1|/0/PREDICTED: coiled-coil domain-containing protein 8-like [Sus scrofa]
gnl|UG|Ssc#S35169650	2	0.58	4	1.14	0	0	"Sus scrofa mRNA, clone:OVRM10102G10, expressed in ovary /gb=AK235668 /gi=115550189 /ug=Ssc.2841 /len=2017"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	"GO:0006664//glycolipid metabolic process;GO:0023052//signaling;GO:0048232//male gamete generation;GO:0006351//transcription, DNA-dependent"	gi|157278612|ref|NP_001098405.1|/4.50296e-113/cAMP-responsive element modulator [Ovis aries]
gnl|UG|Ssc#S58314810	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa exonuclease 3'-5' domain-containing protein 1-like (LOC100516945), mRNA /cds=p(1,1701) /gb=XM_003121586 /gi=311244959 /ug=Ssc.33543 /len=2526"	GO:0044464//cell part	GO:0005488//binding;GO:0004527//exonuclease activity	GO:0034641//cellular nitrogen compound metabolic process	gi|311244960|ref|XP_003121634.1|/0/PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58302503	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa uncharacterized protein C5orf42-like (LOC100516883), mRNA /cds=p(1,9585) /gb=XM_003133892 /gi=311273591 /ug=Ssc.32713 /len=9910"	-	-	-	gi|311273592|ref|XP_003133940.1|/0/PREDICTED: uncharacterized protein C5orf42-like [Sus scrofa]
gnl|UG|Ssc#S18386219	0	0	2	0.57	0	0	"937529 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK466332 /gi=40837609 /ug=Ssc.84793 /len=830"	-	-	-	-
gnl|UG|Ssc#S6009466	13	3.74	2	0.57	6	1.8	"332997 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BG661195 /gi=13816723 /ti=448054898 /ug=Ssc.79629 /len=545"	-	-	-	-
gnl|UG|Ssc#S35166898	592	170.44	700	200.09	789	237.12	"Sus scrofa mRNA, clone:THY010103F09, expressed in thymus /gb=AK239435 /gi=115552841 /ug=Ssc.2649 /len=2838"	GO:0044444//cytoplasmic part	"GO:0046872//metal ion binding;GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups;GO:0032559"	GO:0009314//response to radiation;GO:0009108//coenzyme biosynthetic process;GO:0009719;GO:0048511//rhythmic process;GO:0006730//one-carbon metabolic process;GO:0010033//response to organic substance	"gi|148666566|gb|EDK98982.1|/0/mCG129313, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S46878066	17	4.89	12	3.43	30	9.02	"PREDICTED: Sus scrofa ATP-binding cassette sub-family F member 1-like, transcript variant 1 (LOC100154524), mRNA /cds=p(1,2529) /gb=XM_001929541 /gi=311260072 /ug=Ssc.1504 /len=3174"	GO:0031981//nuclear lumen;GO:0005840//ribosome;GO:0012505//endomembrane system	GO:0090079;GO:0017111//nucleoside-triphosphatase activity;GO:0043021//ribonucleoprotein binding;GO:0032559;GO:0003723//RNA binding	GO:0006412//translation;GO:0022613//ribonucleoprotein complex biogenesis;GO:0009207;GO:0006952//defense response	gi|311260073|ref|XP_001929576.2|/0/PREDICTED: ATP-binding cassette sub-family F member 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S17527348	3	0.86	0	0	4	1.2	"BX676306 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0029.i.06 3prim, mRNA sequence /clone=scac0029.i.06 /clone_end=3' /gb=BX676306 /gi=90238196 /ug=Ssc.81204 /len=637"	GO:0031224//intrinsic to membrane;GO:0032589//neuron projection membrane;GO:0043025//neuronal cell body	GO:0005488//binding;GO:0015377//cation:chloride symporter activity	GO:0007267//cell-cell signaling;GO:0040007//growth;GO:0007611//learning or memory;GO:0045851//pH reduction;GO:0042221//response to chemical stimulus;GO:0015698//inorganic anion transport;GO:0015695//organic cation transport;GO:0030001//metal ion transport	gi|301785387|ref|XP_002928104.1|/2.78965e-23/PREDICTED: LOW QUALITY PROTEIN: solute carrier family 12 member 5-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20945021	3	0.86	6	1.72	5	1.5	"AJ656744 KN277 Sus scrofa cDNA clone C0005194_P07, mRNA sequence /clone=C0005194_P07 /gb=AJ656744 /gi=49340776 /ug=Ssc.93801 /len=719"	-	-	-	-
gnl|UG|Ssc#S35165312	17	4.89	0	0	12	3.61	"Sus scrofa mRNA, clone:LVRM10145D09, expressed in liver /gb=AK233424 /gi=115554414 /ug=Ssc.16161 /len=2528"	-	-	-	-
gnl|UG|Ssc#S58303315	46	13.24	18	5.15	20	6.01	"PREDICTED: Sus scrofa zinc finger protein 503-like (LOC100521339), mRNA /cds=p(332,2155) /gb=XM_003133082 /gi=311271411 /ug=Ssc.42013 /len=3075"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0007420//brain development;GO:0048048//embryonic eye morphogenesis	gi|311271412|ref|XP_003133130.1|/0/PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 503-like [Sus scrofa]
gnl|UG|Ssc#S58304159	63	18.14	35	10	31	9.32	"PREDICTED: Sus scrofa Vpr (HIV-1) binding protein (VPRBP), mRNA /cds=p(1,4284) /gb=XM_003132240 /gi=311268965 /ug=Ssc.82593 /len=4284"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0051704	gi|311268966|ref|XP_003132288.1|/0/PREDICTED: protein VPRBP-like [Sus scrofa]
gnl|UG|Ssc#S58310764	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa dermatopontin-like (LOC100516366), mRNA /cds=p(104,709) /gb=XM_003125649 /gi=311253877 /ug=Ssc.51902 /len=1793"	GO:0031012//extracellular matrix	-	GO:0030198//extracellular matrix organization;GO:0008283//cell proliferation	gi|311253878|ref|XP_003125697.1|/1.64074e-103/PREDICTED: dermatopontin-like [Sus scrofa]
gnl|UG|Ssc#S58314135	3	0.86	2	0.57	2	0.6	"PREDICTED: Sus scrofa ral guanine nucleotide dissociation stimulator-like (LOC100513970), mRNA /cds=p(572,1321) /gb=XM_003122264 /gi=311246712 /ug=Ssc.79537 /len=2018"	-	-	-	-
gnl|UG|Ssc#S40195143	0	0	0	0	2	0.6	"rjej32b_m19.y1 jej Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW290050 /gi=182498704 /ug=Ssc.91677 /len=387"	GO:0005769//early endosome;GO:0010008//endosome membrane	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0046872//metal ion binding;GO:0032559	GO:0070848//response to growth factor stimulus;GO:0001934//positive regulation of protein phosphorylation;GO:0009207;GO:0051259//protein oligomerization;GO:0016197//endosome transport;GO:0006897//endocytosis	gi|297696411|ref|XP_002825387.1|/7.74493e-68/PREDICTED: EH domain-containing protein 4-like isoform 2 [Pongo abelii]
gnl|UG|Ssc#S23213312	5	1.44	3	0.86	8	2.4	"Sus scrofa clone Clu_26373.scr.msk.p1.Contig2, mRNA sequence /gb=AY609696 /gi=52351264 /ug=Ssc.11832 /len=2149"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0008170//N-methyltransferase activity	"GO:0006351//transcription, DNA-dependent;GO:0006397//mRNA processing"	gi|301774995|ref|XP_002922919.1|/0/PREDICTED: mRNA cap guanine-N7 methyltransferase-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35164673	6	1.73	0	0	2	0.6	"Sus scrofa mRNA, clone:UTR010045E10, expressed in uterus /gb=AK240252 /gi=115555053 /ug=Ssc.52224 /len=1191"	GO:0015630//microtubule cytoskeleton;GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	-	gi|311245498|ref|XP_003121849.1|/6.13633e-135/PREDICTED: UPF0568 protein C14orf166-like [Sus scrofa]
gnl|UG|Ssc#S35173385	0	0	6	1.72	0	0	"Sus scrofa mRNA, clone:AMP010070F06, expressed in alveolar macrophage /gb=AK230969 /gi=115546450 /ug=Ssc.3574 /len=1590"	-	-	-	-
gnl|UG|Ssc#S58304559	16	4.61	14	4	12	3.61	"PREDICTED: Sus scrofa protein KIAA0664-like (LOC100513375), mRNA /cds=p(1,5172) /gb=XM_003131839 /gi=311268094 /ug=Ssc.23457 /len=6515"	-	-	-	gi|311268095|ref|XP_003131887.1|/0/PREDICTED: protein KIAA0664-like [Sus scrofa]
gnl|UG|Ssc#S58304710	20	5.76	7	2	13	3.91	"PREDICTED: Sus scrofa ribosomal protein S6 kinase, 70kDa, polypeptide 1, transcript variant 2 (RPS6KB1), mRNA /cds=p(220,1665) /gb=XM_003131672 /gi=311267780 /ug=Ssc.22127 /len=4134"	GO:0030529//ribonucleoprotein complex;GO:0031966//mitochondrial membrane;GO:0044459//plasma membrane part;GO:0005624//membrane fraction	GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0006915//apoptosis;GO:0014874;GO:0007346//regulation of mitotic cell cycle;GO:0008284//positive regulation of cell proliferation;GO:0048017//inositol lipid-mediated signaling;GO:0043434//response to peptide hormone stimulus;GO:0003006//developmental process involved in reproduction;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007243//intracellular protein kinase cascade;GO:0022402//cell cycle process;GO:0031667//response to nutrient levels;GO:0007613//memory;GO:0006464//protein modification process;GO:0031960//response to corticosteroid stimulus;GO:0048631;GO:0043200//response to amino acid stimulus;GO:0006446//regulation of translational initiation;GO:0006796//phosphate metabolic process;GO:0006941//striated muscle contraction;GO:0002237//response to molecule of bacterial origin;GO:0009968//negative regulation of signal transduction;GO:0010827//regulation of glucose transport;GO:0014891;GO:0009746;GO:0014909//smooth muscle cell migration;GO:0006950//response to stress;GO:0034097//response to cytokine stimulus	gi|311267777|ref|XP_003131719.1|/0/PREDICTED: ribosomal protein S6 kinase beta-1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S39887650	79	22.74	12	3.43	110	33.06	"rcmu35_o24.y1 cmu Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV982725 /gi=178545694 /ug=Ssc.4439 /len=677"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0005856//cytoskeleton;GO:0044444//cytoplasmic part	GO:0003712//transcription cofactor activity;GO:0016564//transcription repressor activity;GO:0005515//protein binding	GO:0051084//'de novo' posttranslational protein folding;GO:0048856//anatomical structure development;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0032583//regulation of gene-specific transcription	gi|311255438|ref|XP_001926233.2|/2.98324e-29/PREDICTED: prefoldin subunit 5-like [Sus scrofa]
gnl|UG|Ssc#S50086143	15	4.32	7	2	3	0.9	"Sus scrofa FAD24 protein mRNA, complete cds /cds=p(90,2489) /gb=FJ492746 /gi=218855167 /ug=Ssc.22524 /len=2489"	GO:0016604//nuclear body	-	GO:0030154//cell differentiation	gi|221136959|ref|NP_001137587.1|/0/nucleolar complex protein 3 homolog [Sus scrofa]
gnl|UG|Ssc#S35166233	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10218F06, expressed in ovary /gb=AK236708 /gi=115553505 /ug=Ssc.48091 /len=2391"	GO:0031012//extracellular matrix;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0004888//transmembrane receptor activity	GO:0006952//defense response;GO:0009987//cellular process;GO:0023052//signaling	gi|218526525|sp|A7E3W2.1|LG3BP_BOVIN/0/RecName: Full=Galectin-3-binding protein; AltName: Full=Lectin galactoside-binding soluble 3-binding protein; Flags: Precursor
gnl|UG|Ssc#S35166801	42	12.09	37	10.58	17	5.11	"Sus scrofa mRNA, clone:THY010111D04, expressed in thymus /gb=AK239532 /gi=115552938 /ug=Ssc.34932 /len=1456"	GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle	-	GO:0051169//nuclear transport	"gi|171848685|pdb|2ELL|A/2.73702e-74/Chain A, Solution Structure Of The Leucine Rich Repeat Of Human Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family Member B"
gnl|UG|Ssc#S20938304	11	3.17	0	0	3	0.9	"AJ650027 CSEQRAN19 Sus scrofa cDNA clone C0003274_C23, mRNA sequence /clone=C0003274_C23 /gb=AJ650027 /gi=49326872 /ug=Ssc.85639 /len=470"	-	"GO:0016627//oxidoreductase activity, acting on the CH-CH group of donors;GO:0050662//coenzyme binding"	GO:0006399//tRNA metabolic process	"gi|149055088|gb|EDM06905.1|/1.49778e-77/PP3111 protein, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S58306507	8	2.3	0	0	3	0.9	"PREDICTED: Sus scrofa ring finger protein 214 (RNF214), mRNA /cds=p(30,2147) /gb=XM_003129894 /gi=311263975 /ug=Ssc.5610 /len=2831"	-	GO:0046872//metal ion binding	-	gi|311263976|ref|XP_003129942.1|/0/PREDICTED: RING finger protein 214-like [Sus scrofa]
gnl|UG|Ssc#S35167615	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:THY010092C01, expressed in thymus /gb=AK239317 /gi=115552124 /ug=Ssc.20225 /len=1732"	-	-	-	gi|73946059|ref|XP_533427.2|/3.21463e-48/PREDICTED: similar to Protein C6orf115 [Canis familiaris]
gnl|UG|Ssc#S55322675	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:DCI010039D10, expressed in dendritic cells (immature) /gb=AK344408 /gi=288782197 /ug=Ssc.34705 /len=1944"	-	-	-	gi|115495119|ref|NP_001069231.1|/0/coiled-coil domain-containing protein 63 [Bos taurus]
gnl|UG|Ssc#S46880215	0	0	5	1.43	3	0.9	"PREDICTED: Sus scrofa potassium voltage-gated channel subfamily V member 1-like (LOC100155464), mRNA /cds=p(1,1965) /gb=XM_001924641 /gi=194035661 /ug=Ssc.15547 /len=2885"	-	-	-	-
gnl|UG|Ssc#S6077182	30	8.64	53	15.15	20	6.01	"UNL-P-FN-cn-f-01-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-cn-f-01-0-UNL 3', mRNA sequence /clone=UNL-P-FN-cn-f-01-0-UNL /clone_end=3' /gb=BI184411 /gi=14658820 /ug=Ssc.2257 /len=823"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031252//cell leading edge;GO:0043234//protein complex;GO:0042598//vesicular fraction;GO:0044444//cytoplasmic part	"GO:0032561;GO:0005515//protein binding;GO:0004672//protein kinase activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0032559;GO:0004518//nuclease activity;GO:0016776//phosphotransferase activity, phosphate group as acceptor"	"GO:0006351//transcription, DNA-dependent;GO:0009209//pyrimidine ribonucleoside triphosphate biosynthetic process;GO:0051099//positive regulation of binding;GO:0007589//body fluid secretion;GO:0002573//myeloid leukocyte differentiation;GO:0048732//gland development;GO:0006796//phosphate metabolic process;GO:0030858//positive regulation of epithelial cell differentiation;GO:0008284//positive regulation of cell proliferation;GO:0006171//cAMP biosynthetic process;GO:0006915//apoptosis;GO:0009206;GO:0009132//nucleoside diphosphate metabolic process"	gi|113205886|ref|NP_001038075.1|/6.83782e-83/nucleoside diphosphate kinase B [Sus scrofa]
gnl|UG|Ssc#S20936275	0	0	0	0	3	0.9	"AJ647998 CSEQRAN19 Sus scrofa cDNA clone C0003263_E20, mRNA sequence /clone=C0003263_E20 /gb=AJ647998 /gi=49324843 /ug=Ssc.85543 /len=475"	-	-	-	gi|293353230|ref|XP_223536.4|/8.13202e-87/PREDICTED: hypothetical protein [Rattus norvegicus]
gnl|UG|Ssc#S26714284	4	1.15	7	2	5	1.5	"AJ950368 KN404_1 Sus scrofa cDNA clone C0007743p12 5', mRNA sequence /clone=C0007743p12 /clone_end=5' /gb=AJ950368 /gi=74367184 /ug=Ssc.36897 /len=868"	-	-	-	-
gnl|UG|Ssc#S58307050	0	0	0	0	0	0	"PREDICTED: Sus scrofa 1-acylglycerol-3-phosphate O-acyltransferase 9 (AGPAT9), mRNA /cds=p(1,1317) /gb=XM_003129347 /gi=311262870 /ug=Ssc.4891 /len=2441"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0008374//O-acyltransferase activity	GO:0006644//phospholipid metabolic process;GO:0006641//triglyceride metabolic process;GO:0009966//regulation of signal transduction	gi|311262871|ref|XP_003129395.1|/0/PREDICTED: glycerol-3-phosphate acyltransferase 3-like [Sus scrofa]
gnl|UG|Ssc#S46875941	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa Uncharacterized protein C20orf4 homolog (LOC100152525), mRNA /cds=p(337,1491) /gb=XM_001926938 /gi=311274794 /ug=Ssc.5861 /len=2081"	-	-	-	gi|194044539|ref|XP_001926973.1|/0/PREDICTED: uncharacterized protein C20orf4 homolog [Sus scrofa]
gnl|UG|Ssc#S58305074	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), mRNA /cds=p(1,3345) /gb=XM_003131338 /gi=311267033 /ug=Ssc.87545 /len=3345"	GO:0044424//intracellular part	GO:0043169//cation binding	GO:0007165//signal transduction	gi|311267034|ref|XP_003131386.1|/0/PREDICTED: pleckstrin homology domain-containing family M member 1-like [Sus scrofa]
gnl|UG|Ssc#S58308905	5	1.44	2	0.57	4	1.2	"PREDICTED: Sus scrofa ubiquitin-conjugating enzyme E2 J2-like, transcript variant 2 (LOC100523610), mRNA /cds=p(271,1050) /gb=XM_003127492 /gi=311258290 /ug=Ssc.3257 /len=1414"	-	-	-	-
gnl|UG|Ssc#S35165601	7	2.02	2	0.57	7	2.1	"Sus scrofa mRNA, clone:LVRM10123D12, expressed in liver /gb=AK233335 /gi=115554125 /ug=Ssc.56379 /len=2406"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0032403//protein complex binding;GO:0019899//enzyme binding	GO:0006950//response to stress;GO:0016567//protein ubiquitination;GO:0012501//programmed cell death	gi|111308510|gb|AAI20032.1|/0/UBQLN1 protein [Bos taurus]
gnl|UG|Ssc#S19547527	6	1.73	5	1.43	12	3.61	"953245 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN163694 /gi=46178124 /ug=Ssc.85335 /len=869"	-	-	-	-
gnl|UG|Ssc#S35170693	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:TCH010085G04, expressed in trachea /gb=AK238335 /gi=115549146 /ug=Ssc.54548 /len=1194"	GO:0005626//insoluble fraction;GO:0031967;GO:0044429//mitochondrial part;GO:0016020//membrane	GO:0033764;GO:0005488//binding	GO:0006631//fatty acid metabolic process;GO:0006694//steroid biosynthetic process	gi|262072819|dbj|BAI47717.1|/8.6874e-113/hydroxysteroid (17-beta) dehydrogenase 8 [Sus scrofa]
gnl|UG|Ssc#S46880390	90	25.91	38	10.86	52	15.63	"PREDICTED: Sus scrofa synaptotagmin binding, cytoplasmic RNA interacting protein, transcript variant 1 (SYNCRIP), mRNA /cds=p(100,1971) /gb=XM_001927591 /gi=311244133 /ug=Ssc.82404 /len=2987"	GO:0043234//protein complex;GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen;GO:0042598//vesicular fraction	GO:0003729//mRNA binding	GO:0051704;GO:0000377;GO:0048255//mRNA stabilization	gi|114608498|ref|XP_518621.2|/0/PREDICTED: similar to Syncrip protein [Pan troglodytes]
gnl|UG|Ssc#S58310499	12	3.45	10	2.86	36	10.82	"PREDICTED: Sus scrofa calponin 3, acidic (CNN3), mRNA /cds=p(1,1740) /gb=XM_003125902 /gi=311254759 /ug=Ssc.4848 /len=3125"	GO:0015630//microtubule cytoskeleton;GO:0030425//dendrite;GO:0044297//cell body;GO:0015629//actin cytoskeleton;GO:0044430//cytoskeletal part	GO:0015631//tubulin binding	GO:0043462//regulation of ATPase activity;GO:0030036//actin cytoskeleton organization;GO:0006936//muscle contraction	gi|311254760|ref|XP_003125950.1|/0/PREDICTED: calponin-3 [Sus scrofa]
gnl|UG|Ssc#S18554827	2	0.58	0	0	0	0	"BX923478 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0018d.e.17 5prim, mRNA sequence /clone=scan0018.e.17 /clone_end=5' /gb=BX923478 /gi=41140326 /ug=Ssc.6095 /len=688"	-	-	-	-
gnl|UG|Ssc#S55319508	0	0	0	0	0	0	"Sus scrofa mRNA, clone:THY010204F02, expressed in thymus /gb=AK352058 /gi=288785376 /ug=Ssc.25115 /len=2634"	GO:0043231//intracellular membrane-bounded organelle	GO:0031072//heat shock protein binding	GO:0006259//DNA metabolic process;GO:0001701//in utero embryonic development;GO:0034728;GO:0006810//transport	gi|114556288|ref|XP_001158425.1|/0/PREDICTED: nuclear autoantigenic sperm protein isoform 11 [Pan troglodytes]
gnl|UG|Ssc#S58315176	7	2.02	2	0.57	6	1.8	"PREDICTED: Sus scrofa serine incorporator 1-like (LOC100517382), mRNA /cds=p(96,1457) /gb=XM_003121230 /gi=311244012 /ug=Ssc.47531 /len=2963"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0005488//binding;GO:0034061;GO:0015179//L-amino acid transmembrane transporter activity	GO:0006643//membrane lipid metabolic process;GO:0006260//DNA replication;GO:0006650//glycerophospholipid metabolic process;GO:0043085//positive regulation of catalytic activity;GO:0015807//L-amino acid transport	gi|6382026|dbj|BAA86567.1|/0/KIAA1253 protein [Homo sapiens]
gnl|UG|Ssc#S20937620	8	2.3	2	0.57	10	3.01	"AJ649343 CSEQRAN19 Sus scrofa cDNA clone C0003272_D15, mRNA sequence /clone=C0003272_D15 /gb=AJ649343 /gi=49326188 /ug=Ssc.74142 /len=535"	GO:0005634//nucleus	-	GO:0042254//ribosome biogenesis	"gi|149069396|gb|EDM18837.1|/3.85297e-21/rCG43434, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S58314413	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa non-lysosomal glucosylceramidase-like (LOC100155655), mRNA /cds=p(1,3150) /gb=XM_003122006 /gi=311245988 /ug=Ssc.15216 /len=3304"	-	-	-	-
gnl|UG|Ssc#S29987544	12	3.45	29	8.29	29	8.72	"PDUts2063D09 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2063D09 5' similar to homologue to gb|AC084211.19| Homo sapiens 3 BAC RP11-338L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence, mRNA sequence /clone=PDUts2063D09 /clone_end=5' /gb=CX062018 /gi=84138160 /ug=Ssc.33746 /len=447"	-	-	-	-
gnl|UG|Ssc#S23755399	11	3.17	19	5.43	5	1.5	"1112262 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN113023 /gi=59806756 /ug=Ssc.23139 /len=856"	GO:0010008//endosome membrane	GO:0032561;GO:0005515//protein binding;GO:0017111//nucleoside-triphosphatase activity	GO:0051234//establishment of localization;GO:0001934//positive regulation of protein phosphorylation;GO:0007265//Ras protein signal transduction;GO:0045859//regulation of protein kinase activity;GO:0043408//regulation of MAPKKK cascade;GO:0010769//regulation of cell morphogenesis involved in differentiation;GO:0009207;GO:0030036//actin cytoskeleton organization;GO:0008104//protein localization;GO:0016477//cell migration	gi|114589900|ref|XP_001140638.1|/7.01463e-94/PREDICTED: hypothetical protein [Pan troglodytes]
gnl|UG|Ssc#S46878265	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa u3 small nucleolar ribonucleoprotein protein IMP3-like (LOC100151831), mRNA /cds=p(54,608) /gb=XM_001929228 /gi=311260759 /ug=Ssc.2208 /len=1186"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen	GO:0003723//RNA binding	GO:0042254//ribosome biogenesis	gi|194039708|ref|XP_001929263.1|/3.73778e-92/PREDICTED: u3 small nucleolar ribonucleoprotein protein IMP3-like [Sus scrofa]
gnl|UG|Ssc#S46877257	4	1.15	2	0.57	4	1.2	"PREDICTED: Sus scrofa phosphatidylinositol 4-kinase type 2 alpha (PI4K2A), mRNA /cds=p(1,1440) /gb=XM_001929034 /gi=311271708 /ug=Ssc.11395 /len=1843"	GO:0032991//macromolecular complex;GO:0016021//integral to membrane;GO:0030133//transport vesicle;GO:0008021//synaptic vesicle;GO:0005769//early endosome;GO:0043025//neuronal cell body;GO:0042598//vesicular fraction	GO:0001727//lipid kinase activity;GO:0046872//metal ion binding;GO:0005515//protein binding;GO:0032559	GO:0002276;GO:0046488//phosphatidylinositol metabolic process;GO:0046474//glycerophospholipid biosynthetic process;GO:0006796//phosphate metabolic process	gi|194041813|ref|XP_001929069.1|/0/PREDICTED: phosphatidylinositol 4-kinase type 2-alpha [Sus scrofa]
gnl|UG|Ssc#S58314627	41	11.8	54	15.44	18	5.41	"PREDICTED: Sus scrofa F-box protein 33 (FBXO33), partial mRNA /cds=p(1,1069) /gb=XM_003121776 /gi=311245418 /ug=Ssc.13709 /len=2866"	-	-	-	gi|311245431|ref|XP_001926627.2|/0/PREDICTED: f-box only protein 33-like [Sus scrofa]
gnl|UG|Ssc#S34499621	7	2.02	4	1.14	3	0.9	"DB811921 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10006G03 /clone_end=3' /gb=DB811921 /gi=112769285 /ug=Ssc.82141 /len=880"	GO:0044444//cytoplasmic part	"GO:0017111//nucleoside-triphosphatase activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561"	GO:0006413//translational initiation;GO:0009207	gi|149737689|ref|XP_001490455.1|/2.34623e-108/PREDICTED: eukaryotic translation initiation factor 5 [Equus caballus]
gnl|UG|Ssc#S46878881	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) (MPP5), mRNA /cds=p(1,2028) /gb=XM_001925573 /gi=311261242 /ug=Ssc.29346 /len=3844"	GO:0043296//apical junction complex;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0005515//protein binding;GO:0016776//phosphotransferase activity, phosphate group as acceptor"	GO:0007043//cell-cell junction assembly	gi|311261243|ref|XP_001925608.2|/0/PREDICTED: MAGUK p55 subfamily member 5 [Sus scrofa]
gnl|UG|Ssc#S35323313	2	0.58	0	0	0	0	"SusFleck_BF_0013_0016_5_pCNS_P22 SusFleck Backfat Sus scrofa cDNA clone 0013_0016_P22 5', mRNA sequence /clone=0013_0016_P22 /clone_end=5' /gb=DT321705 /gi=116340672 /ug=Ssc.75236 /len=799"	GO:0044464//cell part	-	GO:0015031//protein transport	gi|149642565|ref|NP_001092624.1|/1.12263e-111/target of myb1-like 2 [Bos taurus]
gnl|UG|Ssc#S58314455	0	0	6	1.72	0	0	"PREDICTED: Sus scrofa structural maintenance of chromosomes protein 5-like (LOC100515003), partial mRNA /cds=p(1,1506) /gb=XM_003121947 /gi=311245887 /ug=Ssc.18713 /len=1901"	GO:0043231//intracellular membrane-bounded organelle	GO:0032559	GO:0006259//DNA metabolic process;GO:0033554//cellular response to stress	"gi|311245888|ref|XP_003121995.1|/0/PREDICTED: structural maintenance of chromosomes protein 5-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58301218	0	0	2	0.57	10	3.01	"PREDICTED: Sus scrofa peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like (LOC100524473), mRNA /cds=p(60,455) /gb=XM_003135180 /gi=311276482 /ug=Ssc.18633 /len=1523"	GO:0030529//ribonucleoprotein complex;GO:0044429//mitochondrial part;GO:0031981//nuclear lumen;GO:0015630//microtubule cytoskeleton	GO:0016859//cis-trans isomerase activity;GO:0043566//structure-specific DNA binding	GO:0042254//ribosome biogenesis;GO:0044267//cellular protein metabolic process	"gi|62739712|gb|AAH93700.1|/6.46661e-58/Protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Homo sapiens]"
gnl|UG|Ssc#S58301989	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa gamma-glutamyltransferase 7-like (LOC100519401), mRNA /cds=p(12,2000) /gb=XM_003134405 /gi=311274751 /ug=Ssc.18255 /len=2591"	GO:0031224//intrinsic to membrane	"GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups;GO:0016755"	GO:0006749//glutathione metabolic process	gi|311274752|ref|XP_003134453.1|/0/PREDICTED: gamma-glutamyltransferase 7-like [Sus scrofa]
gnl|UG|Ssc#S58303922	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa ceruloplasmin (ferroxidase) (CP), mRNA /cds=p(67,3264) /gb=XM_003132473 /gi=311269518 /ug=Ssc.10453 /len=4277"	GO:0044421//extracellular region part	GO:0046914//transition metal ion binding;GO:0016724;GO:0005515//protein binding	GO:0008152//metabolic process;GO:0000041//transition metal ion transport;GO:0006875//cellular metal ion homeostasis	gi|311269519|ref|XP_003132521.1|/0/PREDICTED: ceruloplasmin [Sus scrofa]
gnl|UG|Ssc#S46879652	13	3.74	4	1.14	6	1.8	"PREDICTED: Sus scrofa aldehyde dehydrogenase 9A1 (LOC100153809), mRNA /cds=p(1,1791) /gb=XM_001924860 /gi=311253915 /ug=Ssc.3723 /len=2512"	GO:0043231//intracellular membrane-bounded organelle;GO:0005856//cytoskeleton;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0004030//aldehyde dehydrogenase [NAD(P)+] activity;GO:0042802//identical protein binding;GO:0000166//nucleotide binding	GO:0042133//neurotransmitter metabolic process;GO:0006520//cellular amino acid metabolic process;GO:0048513//organ development;GO:0006578//betaine biosynthetic process	gi|194036835|ref|XP_001924895.1|/0/PREDICTED: 4-trimethylaminobutyraldehyde dehydrogenase [Sus scrofa]
gnl|UG|Ssc#S58301368	279	80.33	86	24.58	394	118.41	"PREDICTED: Sus scrofa probable ubiquitin carboxyl-terminal hydrolase FAF-X-like (LOC100517440), mRNA /cds=p(416,7975) /gb=XM_003135035 /gi=311276163 /ug=Ssc.11811 /len=9671"	GO:0044424//intracellular part	GO:0016790//thiolester hydrolase activity;GO:0004175//endopeptidase activity;GO:0046332//SMAD binding	GO:0007276//gamete generation;GO:0019941//modification-dependent protein catabolic process;GO:0000087//M phase of mitotic cell cycle;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0070646	gi|311276164|ref|XP_003135083.1|/0/PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like [Sus scrofa]
gnl|UG|Ssc#S26716358	3	0.86	0	0	9	2.7	"AJ952442 KN404_1 Sus scrofa cDNA clone C0007744j13 3', mRNA sequence /clone=C0007744j13 /clone_end=3' /gb=AJ952442 /gi=74369258 /ug=Ssc.6243 /len=818"	-	-	-	-
gnl|UG|Ssc#S58312403	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa IgA-inducing protein homolog (LOC100511920), mRNA /cds=p(1667,1828) /gb=XM_003124003 /gi=311250283 /ug=Ssc.8829 /len=2004"	-	-	-	gi|291387449|ref|XP_002710296.1|/9.85156e-28/PREDICTED: IgA-inducing protein [Oryctolagus cuniculus]
gnl|UG|Ssc#S35171552	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:ITT010088H05, expressed in intestine /gb=AK231538 /gi=115548283 /ug=Ssc.13176 /len=1982"	GO:0005884//actin filament;GO:0030666//endocytic vesicle membrane;GO:0031252//cell leading edge;GO:0044459//plasma membrane part	GO:0003779//actin binding;GO:0042802//identical protein binding;GO:0019900//kinase binding	GO:0051125//regulation of actin nucleation;GO:0007155//cell adhesion;GO:0050863//regulation of T cell activation;GO:0010033//response to organic substance;GO:0006906//vesicle fusion;GO:0050900//leukocyte migration;GO:0030030//cell projection organization;GO:0070838//divalent metal ion transport;GO:0006897//endocytosis;GO:0006935//chemotaxis;GO:0002260//lymphocyte homeostasis;GO:0030098//lymphocyte differentiation;GO:0006952//defense response;GO:0042098//T cell proliferation;GO:0001894//tissue homeostasis	gi|27806251|ref|NP_776946.1|/0/coronin-1A [Bos taurus]
gnl|UG|Ssc#S28103974	50	14.4	125	35.73	45	13.52	"Sus scrofa UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase (Gne) mRNA, complete cds /cds=p(11,2179) /gb=DQ132898 /gi=84874713 /ug=Ssc.32494 /len=4326"	GO:0005856//cytoskeleton;GO:0044444//cytoplasmic part	"GO:0016857//racemase and epimerase activity, acting on carbohydrates and derivatives;GO:0016773//phosphotransferase activity, alcohol group as acceptor;GO:0032559"	GO:0008610//lipid biosynthetic process;GO:0006054//N-acetylneuraminate metabolic process;GO:0016310//phosphorylation;GO:0006044//N-acetylglucosamine metabolic process	gi|84874714|gb|AAZ30052.2|/0/UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase [Sus scrofa]
gnl|UG|Ssc#S35168886	29	8.35	50	14.29	77	23.14	"Sus scrofa mRNA, clone:OVRM10128D08, expressed in ovary /gb=AK235948 /gi=115550873 /ug=Ssc.26880 /len=1361"	GO:0043227//membrane-bounded organelle;GO:0009986//cell surface;GO:0005887//integral to plasma membrane	GO:0004871//signal transducer activity;GO:0005515//protein binding	GO:0045830//positive regulation of isotype switching;GO:0009612//response to mechanical stimulus;GO:0030888//regulation of B cell proliferation;GO:0002764//immune response-regulating signaling pathway;GO:0001819//positive regulation of cytokine production;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0065003;GO:0006952//defense response;GO:0043065//positive regulation of apoptosis	gi|47523466|ref|NP_999359.1|/1.05212e-165/tumor necrosis factor receptor superfamily member 5 precursor [Sus scrofa]
gnl|UG|Ssc#S46876140	10	2.88	3	0.86	8	2.4	"PREDICTED: Sus scrofa ADP-ribosylation factor-like protein 6-interacting protein 6-like (LOC100152698), mRNA /cds=p(490,1167) /gb=XM_001926700 /gi=311272469 /ug=Ssc.1115 /len=2853"	GO:0016020//membrane	GO:0005488//binding	-	gi|194044122|ref|XP_001926735.1|/1.72272e-100/PREDICTED: ADP-ribosylation factor-like protein 6-interacting protein 6-like [Sus scrofa]
gnl|UG|Ssc#S23213486	8	2.3	8	2.29	2	0.6	"Sus scrofa clone Clu_1336.scr.msk.p1.Contig6, mRNA sequence /gb=AY609491 /gi=52351086 /ug=Ssc.246 /len=2222"	GO:0005887//integral to plasma membrane	GO:0008556//potassium-transporting ATPase activity;GO:0005488//binding	GO:0007599//hemostasis;GO:0009207;GO:0002376//immune system process;GO:0006950//response to stress;GO:0009206	gi|1703469|sp|P05027.2|AT1B1_PIG/1.39599e-171/RecName: Full=Sodium/potassium-transporting ATPase subunit beta-1; AltName: Full=Sodium/potassium-dependent ATPase subunit beta-1
gnl|UG|Ssc#S39941303	2	0.58	0	0	0	0	"rcte11_j18.y1 cte Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW036368 /gi=181218144 /ug=Ssc.63035 /len=599"	GO:0031224//intrinsic to membrane	-	-	gi|73990620|ref|XP_542806.2|/4.57014e-54/PREDICTED: similar to chr3 synaptotagmin [Canis familiaris]
gnl|UG|Ssc#S58302801	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa islet cell autoantigen 1,69kDa-like (ICA1L), mRNA /cds=p(1,1446) /gb=XM_003133591 /gi=311272915 /ug=Ssc.88220 /len=1446"	-	-	-	gi|311272916|ref|XP_003133639.1|/0/PREDICTED: islet cell autoantigen 1-like protein-like [Sus scrofa]
gnl|UG|Ssc#S58310525	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa syntaxin binding protein 3 (STXBP3), mRNA /cds=p(1,1611) /gb=XM_003125877 /gi=311254676 /ug=Ssc.48999 /len=1939"	GO:0031981//nuclear lumen;GO:0030141//stored secretory granule;GO:0044459//plasma membrane part	GO:0019905//syntaxin binding	GO:0007599//hemostasis;GO:0002283;GO:0007417//central nervous system development;GO:0034109//homotypic cell-cell adhesion;GO:0022406;GO:0008645//hexose transport;GO:0043434//response to peptide hormone stimulus;GO:0051259//protein oligomerization;GO:0030072//peptide hormone secretion;GO:0017158//regulation of calcium ion-dependent exocytosis	gi|311254677|ref|XP_003125925.1|/0/PREDICTED: syntaxin-binding protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58310138	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa cyclin-dependent kinase-2 alpha (LOC100154715), mRNA /cds=p(148,1044) /gb=XM_003126259 /gi=311255646 /ug=Ssc.16532 /len=2161"	-	-	-	-
gnl|UG|Ssc#S58312389	91	26.2	29	8.29	53	15.93	"PREDICTED: Sus scrofa histidyl-tRNA synthetase, cytoplasmic-like (LOC100518652), mRNA /cds=p(111,1640) /gb=XM_003124033 /gi=311250312 /ug=Ssc.4573 /len=1957"	GO:0044444//cytoplasmic part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|311250313|ref|XP_003124081.1|/0/PREDICTED: histidyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]"
gnl|UG|Ssc#S55321271	3	0.86	27	7.72	3	0.9	"Sus scrofa mRNA, clone:ITT010083F10, expressed in small intestine /gb=AK345216 /gi=288783601 /ug=Ssc.46902 /len=2211"	GO:0000323//lytic vacuole;GO:0005819//spindle	GO:0003774//motor activity;GO:0032559	GO:0048869;GO:0048731;GO:0007017//microtubule-based process;GO:0007067//mitosis;GO:0007599//hemostasis	gi|73949595|ref|XP_860516.1|/0/PREDICTED: similar to Kinesin-like protein KIF2 (Kinesin-2) (HK2) isoform 5 [Canis familiaris]
gnl|UG|Ssc#S6091477	100	28.79	69	19.72	120	36.06	S.scrofa mRNA for grp78 protein /gb=X92446 /gi=1041668 /ug=Ssc.1717 /len=2453	GO:0043234//protein complex;GO:0042598//vesicular fraction;GO:0031227//intrinsic to endoplasmic reticulum membrane;GO:0048770	GO:0004869//cysteine-type endopeptidase inhibitor activity;GO:0046872//metal ion binding;GO:0032559;GO:0017111//nucleoside-triphosphatase activity;GO:0043021//ribonucleoprotein binding;GO:0019899//enzyme binding	GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0010466//negative regulation of peptidase activity;GO:0001775//cell activation;GO:0006887//exocytosis;GO:0009790//embryo development;GO:0016567//protein ubiquitination;GO:0009207;GO:0030968//endoplasmic reticulum unfolded protein response;GO:0032268//regulation of cellular protein metabolic process;GO:0007599//hemostasis;GO:0043066//negative regulation of apoptosis;GO:0009267//cellular response to starvation;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0021695//cerebellar cortex development;GO:0021577	gi|301761876|ref|XP_002916357.1|/0/PREDICTED: 78 kDa glucose-regulated protein-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55274910	2	0.58	0	0	0	0	"FS677286 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010086G03 5', mRNA sequence /clone=KDN010086G03 /clone_end=5' /gb=FS677286 /gi=288275054 /ug=Ssc.24935 /len=844"	GO:0005769//early endosome;GO:0012505//endomembrane system	GO:0005543//phospholipid binding	"GO:0042147//retrograde transport, endosome to Golgi;GO:0015031//protein transport"	gi|114052240|ref|NP_001039998.1|/3.28156e-128/sorting nexin-8 [Bos taurus]
gnl|UG|Ssc#S46876624	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa slingshot homolog 1 (Drosophila) (SSH1), mRNA /cds=p(1,3147) /gb=XM_001929329 /gi=311270805 /ug=Ssc.48875 /len=3274"	GO:0044424//intracellular part;GO:0016020//membrane	GO:0008092//cytoskeletal protein binding;GO:0004721//phosphoprotein phosphatase activity	GO:0006470//protein dephosphorylation;GO:0030032//lamellipodium assembly;GO:0031323//regulation of cellular metabolic process;GO:0030832//regulation of actin filament length;GO:0010769//regulation of cell morphogenesis involved in differentiation;GO:0033198//response to ATP	gi|194043121|ref|XP_001929364.1|/0/PREDICTED: protein phosphatase Slingshot homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S35170395	6	1.73	8	2.29	4	1.2	"Sus scrofa mRNA, clone:OVRM10084H09, expressed in ovary /gb=AK235466 /gi=115549444 /ug=Ssc.55273 /len=1720"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0070567	GO:0006644//phospholipid metabolic process	gi|262272069|ref|NP_001160145.1|/0/phosphatidate cytidylyltransferase 2 [Sus scrofa]
gnl|UG|Ssc#S40473094	0	0	0	0	2	0.6	"rsme21_f5.y1 sme Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW567700 /gi=183067230 /ug=Ssc.57944 /len=598"	-	-	-	-
gnl|UG|Ssc#S55939205	23	6.62	15	4.29	22	6.61	"Sus scrofa retinoid X receptor, beta (RXRB), mRNA /cds=p(1,1599) /gb=NM_001190246 /gi=298228981 /ug=Ssc.1598 /len=2739"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0010861//thyroid hormone receptor activator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0003704//specific RNA polymerase II transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0008289//lipid binding;GO:0003708//retinoic acid receptor activity;GO:0008134//transcription factor binding	GO:0055007//cardiac muscle cell differentiation;GO:0032526//response to retinoic acid;GO:0009755//hormone-mediated signaling pathway;GO:0014855;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0010469//regulation of receptor activity;GO:0030522//intracellular receptor mediated signaling pathway	gi|301757105|ref|XP_002914382.1|/1.14983e-178/PREDICTED: retinoic acid receptor RXR-beta-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55326778	43	12.38	24	6.86	42	12.62	"Sus scrofa mRNA, clone:OVRM10008C12, expressed in ovary /gb=AK347873 /gi=288778048 /ug=Ssc.80426 /len=2090"	-	-	-	-
gnl|UG|Ssc#S48830434	27	7.77	18	5.15	26	7.81	"Sus scrofa methionine adenosyltransferase 2beta (MAT2beta) mRNA, complete cds /cds=p(31,1035) /gb=EU725862 /gi=198448578 /ug=Ssc.13763 /len=1800"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0005488//binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0030234//enzyme regulator activity"	GO:0009108//coenzyme biosynthetic process;GO:0019222//regulation of metabolic process;GO:0006730//one-carbon metabolic process;GO:0033692//cellular polysaccharide biosynthetic process	gi|218664471|ref|NP_001136304.1|/0/methionine adenosyltransferase 2 subunit beta [Sus scrofa]
gnl|UG|Ssc#S58302561	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein) (CTNND2), partial mRNA /cds=p(1,3502) /gb=XM_003133835 /gi=311273472 /ug=Ssc.51171 /len=3502"	GO:0070161;GO:0043231//intracellular membrane-bounded organelle;GO:0005624//membrane fraction;GO:0044430//cytoskeletal part	GO:0005488//binding	"GO:0016337//cell-cell adhesion;GO:0050804//regulation of synaptic transmission;GO:0007611//learning or memory;GO:0006351//transcription, DNA-dependent;GO:0009653//anatomical structure morphogenesis"	"gi|311273473|ref|XP_003133883.1|/0/PREDICTED: catenin delta-2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S6081381	6	1.73	17	4.86	6	1.8	"MI-P-CP1-nza-n-18-0-UI.s1 MI-P-CP1 Sus scrofa cDNA clone MI-P-CP1-nza-n-18-0-UI 3', mRNA sequence /clone=MI-P-CP1-nza-n-18-0-UI /clone_end=3' /gb=BQ604065 /gi=21550791 /ug=Ssc.3217 /len=778"	-	-	-	-
gnl|UG|Ssc#S58307560	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein KIAA0232-like (LOC100521462), mRNA /cds=p(352,4521) /gb=XM_003128838 /gi=311261833 /ug=Ssc.85937 /len=4521"	-	GO:0005488//binding	-	gi|311261834|ref|XP_003128886.1|/0/PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein KIAA0232-like [Sus scrofa]
gnl|UG|Ssc#S19550445	2	0.58	3	0.86	2	0.6	"998214 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN166541 /gi=46180971 /ug=Ssc.7290 /len=821"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0005515//protein binding;GO:0003676//nucleic acid binding	GO:0001934//positive regulation of protein phosphorylation;GO:0006412//translation;GO:0043393//regulation of protein binding;GO:0031346//positive regulation of cell projection organization;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0048869;GO:0016049//cell growth;GO:0030177//positive regulation of Wnt receptor signaling pathway	gi|297691495|ref|XP_002823121.1|/1.61644e-84/PREDICTED: LOW QUALITY PROTEIN: caprin-2-like [Pongo abelii]
gnl|UG|Ssc#S20937273	2	0.58	0	0	0	0	"AJ648996 CSEQRAN19 Sus scrofa cDNA clone C0003271_D20, mRNA sequence /clone=C0003271_D20 /gb=AJ648996 /gi=49325841 /ug=Ssc.74136 /len=545"	GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0005488//binding;GO:0004857//enzyme inhibitor activity	GO:0019222//regulation of metabolic process;GO:0006595//polyamine metabolic process;GO:0006520//cellular amino acid metabolic process	gi|38494225|gb|AAH61550.1|/4.81727e-95/Antizyme inhibitor 1 [Rattus norvegicus]
gnl|UG|Ssc#S20936729	0	0	0	0	3	0.9	"AJ648452 CSEQRAN19 Sus scrofa cDNA clone C0003264_L04, mRNA sequence /clone=C0003264_L04 /gb=AJ648452 /gi=49325297 /ug=Ssc.74107 /len=533"	GO:0043234//protein complex;GO:0044424//intracellular part	GO:0003676//nucleic acid binding;GO:0004518//nuclease activity	GO:0016072//rRNA metabolic process	gi|166201905|sp|Q5U2P0.2|DI3L1_RAT/6.06129e-52/RecName: Full=DIS3-like exonuclease 1
gnl|UG|Ssc#S55325775	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:PBL010050D04, expressed in peripheral blood mononuclear cells /gb=AK348876 /gi=288779051 /ug=Ssc.31061 /len=1568"	-	-	-	-
gnl|UG|Ssc#S35173278	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:OVR010054D11, expressed in ovary /gb=AK234395 /gi=115546557 /ug=Ssc.81997 /len=2007"	-	-	-	-
gnl|UG|Ssc#S18357319	0	0	0	0	2	0.6	"908420 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK452760 /gi=40799974 /ug=Ssc.16026 /len=887"	-	-	-	-
gnl|UG|Ssc#S55325162	66	19	126	36.02	41	12.32	"Sus scrofa mRNA, clone:PTG010073E11, expressed in pituitary gland /gb=AK349446 /gi=288779710 /ug=Ssc.38780 /len=3884"	GO:0005874//microtubule	GO:0046914//transition metal ion binding;GO:0019899//enzyme binding;GO:0003824//catalytic activity	GO:0007019//microtubule depolymerization;GO:0032872//regulation of stress-activated MAPK cascade;GO:0007275//multicellular organismal development	gi|311275912|ref|XP_003134970.1|/0/PREDICTED: midline-1-like [Sus scrofa]
gnl|UG|Ssc#S58309403	54	15.55	20	5.72	35	10.52	"PREDICTED: Sus scrofa dnaJ homolog subfamily A member 2-like (LOC100521133), mRNA /cds=p(129,1367) /gb=XM_003126994 /gi=311257280 /ug=Ssc.1752 /len=1804"	GO:0000267//cell fraction;GO:0044424//intracellular part	GO:0043169//cation binding;GO:0005515//protein binding;GO:0032559	GO:0008283//cell proliferation;GO:0006950//response to stress;GO:0044267//cellular protein metabolic process	gi|311257281|ref|XP_003127042.1|/0/PREDICTED: dnaJ homolog subfamily A member 2-like [Sus scrofa]
gnl|UG|Ssc#S55323472	0	0	0	0	0	0	"Sus scrofa mRNA, clone:BFLT10033E10, expressed in brain (frontal lobe) /gb=AK344009 /gi=288781400 /ug=Ssc.21734 /len=1415"	-	-	-	gi|297466362|ref|XP_001789586.2|/1.7234e-33/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S58314635	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa La ribonucleoprotein domain family, member 6 (LARP6), mRNA /cds=p(1,1479) /gb=XM_003121764 /gi=311245397 /ug=Ssc.28444 /len=1997"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|311245398|ref|XP_003121812.1|/0/PREDICTED: la-related protein 6-like [Sus scrofa]
gnl|UG|Ssc#S40311604	0	0	0	0	5	1.5	"rmgp21_d20r1.y2 mgp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW406211 /gi=182800464 /ug=Ssc.68869 /len=556"	-	-	-	-
gnl|UG|Ssc#S35173594	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:UTR010080B12, expressed in uterus /gb=AK240479 /gi=115546241 /ug=Ssc.17306 /len=1491"	-	-	-	-
gnl|UG|Ssc#S29987149	0	0	2	0.57	0	0	"PDUts2059B05 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2059B05 5' similar to homologue to emb|AL121902.13| Human DNA sequence from clone RP11-80K6 on chromosome 20 Contains a putative novel gene, an RPL36 (60S ribosomal protein L36) pseu> /clone=PDUts2059B05 /clone_end=5' /gb=CX061623 /gi=84137765 /ug=Ssc.33765 /len=384"	-	-	-	-
gnl|UG|Ssc#S55235709	0	0	0	0	2	0.6	"FS640168 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10003A05 5', mRNA sequence /clone=BFLT10003A05 /clone_end=5' /gb=FS640168 /gi=288229700 /ug=Ssc.79040 /len=766"	-	-	-	-
gnl|UG|Ssc#S46875713	16	4.61	3	0.86	0	0	"PREDICTED: Sus scrofa ATP-binding cassette, sub-family B (MDR/TAP), member 7 (ABCB7), mRNA /cds=p(15,2273) /gb=XM_001928719 /gi=311276521 /ug=Ssc.21338 /len=2862"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0019866//organelle inner membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0015405;GO:0051184;GO:0032559	GO:0051181//cofactor transport;GO:0006875//cellular metal ion homeostasis;GO:0009207	"gi|311276522|ref|XP_001928754.2|/0/PREDICTED: ATP-binding cassette sub-family B member 7, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S43678666	6	1.73	0	0	10	3.01	"Sus scrofa RAI14 mRNA for retinoic acid induced 14, complete cds /cds=p(200,3142) /gb=AB364505 /gi=183223980 /ug=Ssc.32365 /len=4894"	GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0005488//binding	-	gi|190360623|ref|NP_001121934.1|/0/ankycorbin [Sus scrofa]
gnl|UG|Ssc#S47692508	4	1.15	0	0	0	0	"Sus scrofa solute carrier family 30 member 5 (slc30A5) mRNA, complete cds /cds=p(5,2308) /gb=FJ230771 /gi=209401583 /ug=Ssc.54086 /len=2347"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0044459//plasma membrane part;GO:0030141//stored secretory granule	GO:0046914//transition metal ion binding;GO:0046915//transition metal ion transmembrane transporter activity	GO:0010038//response to metal ion;GO:0006829//zinc ion transport;GO:0015992//proton transport	gi|212549611|ref|NP_001131096.1|/0/zinc transporter 5 [Sus scrofa]
gnl|UG|Ssc#S58310884	13	3.74	13	3.72	6	1.8	"PREDICTED: Sus scrofa rRNA-processing protein UTP23 homolog (LOC100522992), mRNA /cds=p(125,880) /gb=XM_003125516 /gi=311253466 /ug=Ssc.20903 /len=1294"	GO:0031981//nuclear lumen	-	GO:0042254//ribosome biogenesis	gi|311253467|ref|XP_003125564.1|/4.05311e-127/PREDICTED: rRNA-processing protein UTP23 homolog [Sus scrofa]
gnl|UG|Ssc#S55326252	9	2.59	3	0.86	7	2.1	"Sus scrofa mRNA, clone:OVRM10154A06, expressed in ovary /gb=AK348399 /gi=288778574 /ug=Ssc.17588 /len=3626"	GO:0016020//membrane;GO:0031981//nuclear lumen	GO:0060089;GO:0003676//nucleic acid binding	GO:0007249//I-kappaB kinase/NF-kappaB cascade	gi|311248962|ref|XP_003123397.1|/0/PREDICTED: LOW QUALITY PROTEIN: coiled-coil and C2 domain-containing protein 1A-like [Sus scrofa]
gnl|UG|Ssc#S58300916	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa ATP-binding cassette, sub-family D (ALD), member 1 (ABCD1), mRNA /cds=p(1,1206) /gb=XM_003135473 /gi=311277174 /ug=Ssc.39422 /len=1538"	GO:0031231	GO:0005515//protein binding;GO:0005324//long-chain fatty acid transporter activity;GO:0017111//nucleoside-triphosphatase activity;GO:0015405;GO:0032559	GO:0006635//fatty acid beta-oxidation;GO:0015909//long-chain fatty acid transport;GO:0043574;GO:0009207;GO:0006996//organelle organization;GO:0015915	gi|311277175|ref|XP_003135521.1|/0/PREDICTED: ATP-binding cassette sub-family D member 1-like [Sus scrofa]
gnl|UG|Ssc#S23694140	3	0.86	6	1.72	2	0.6	"1101153 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN105243 /gi=59780091 /ug=Ssc.54245 /len=806"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	-	"gi|119582458|gb|EAW62054.1|/1.17331e-148/hCG2045902, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S55327298	410	118.04	1007	287.85	239	71.83	"Sus scrofa mRNA, clone:OVR010014B06, expressed in ovary /gb=AK347351 /gi=288576758 /ug=Ssc.9133 /len=1204"	GO:0043231//intracellular membrane-bounded organelle	GO:0004532//exoribonuclease activity;GO:0005488//binding	GO:0006753	"gi|311263942|ref|XP_003129926.1|/4.35389e-104/PREDICTED: oligoribonuclease, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S18545842	4	1.15	0	0	0	0	"BX914493 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0001.e.13 5prim, mRNA sequence /clone=scan0001.e.13 /clone_end=5' /gb=BX914493 /gi=90237110 /ug=Ssc.4685 /len=827"	GO:0000267//cell fraction;GO:0044439	GO:0031072//heat shock protein binding;GO:0042802//identical protein binding;GO:0000166//nucleotide binding;GO:0016831//carboxy-lyase activity	GO:0006084//acetyl-CoA metabolic process;GO:0042221//response to chemical stimulus;GO:0006720//isoprenoid metabolic process;GO:0008283//cell proliferation;GO:0008203//cholesterol metabolic process	gi|115495513|ref|NP_001068892.1|/2.37161e-75/diphosphomevalonate decarboxylase [Bos taurus]
gnl|UG|Ssc#S58305157	0	0	0	0	0	0	"PREDICTED: Sus scrofa tweety homolog 2 (Drosophila) (TTYH2), mRNA /cds=p(43,1647) /gb=XM_003131240 /gi=311266859 /ug=Ssc.2531 /len=3445"	GO:0034702	GO:0005488//binding;GO:0005253//anion channel activity	GO:0015698//inorganic anion transport	gi|311266860|ref|XP_003131288.1|/0/PREDICTED: protein tweety homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S55321805	0	0	7	2	4	1.2	"Sus scrofa mRNA, clone:ITT010005H05, expressed in small intestine /gb=AK344880 /gi=288783067 /ug=Ssc.55149 /len=1157"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0017169//CDP-alcohol phosphatidyltransferase activity	GO:0006506//GPI anchor biosynthetic process	gi|311252682|ref|XP_003125215.1|/2.25584e-102/PREDICTED: phosphatidylinositol-glycan biosynthesis class F protein-like [Sus scrofa]
gnl|UG|Ssc#S58312873	2	0.58	0	0	5	1.5	"PREDICTED: Sus scrofa cartilage oligomeric matrix protein (COMP), mRNA /cds=p(46,2316) /gb=XM_003123527 /gi=311249320 /ug=Ssc.16356 /len=2421"	-	-	-	-
gnl|UG|Ssc#S58311084	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa transmembrane protein C2orf18-like (LOC100513653), mRNA /cds=p(1,1116) /gb=XM_003125327 /gi=311252983 /ug=Ssc.93743 /len=1191"	GO:0005764//lysosome;GO:0031224//intrinsic to membrane	-	-	gi|311252984|ref|XP_003125375.1|/0/PREDICTED: transmembrane protein C2orf18-like [Sus scrofa]
gnl|UG|Ssc#S55292781	5	1.44	0	0	0	0	"FS665303 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10015F07 5', mRNA sequence /clone=HTMT10015F07 /clone_end=5' /gb=FS665303 /gi=288291555 /ug=Ssc.47123 /len=765"	GO:0016020//membrane	-	-	"gi|73974854|ref|XP_532348.2|/2.55657e-46/PREDICTED: similar to glutamate receptor, ionotropic, N-methyl D-asparate-associated protein 1 [Canis familiaris]"
gnl|UG|Ssc#S55326781	35	10.08	32	9.15	25	7.51	"Sus scrofa mRNA, clone:OVRM10007H06, expressed in ovary /gb=AK347870 /gi=288778045 /ug=Ssc.54397 /len=1525"	GO:0005768//endosome;GO:0030141//stored secretory granule;GO:0042598//vesicular fraction;GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0008047//enzyme activator activity;GO:0022892;GO:0000149//SNARE binding;GO:0019899//enzyme binding;GO:0032561;GO:0035254//glutamate receptor binding	GO:0007265//Ras protein signal transduction;GO:0009207;GO:0006897//endocytosis	gi|54792729|ref|NP_001003275.1|/2.9943e-111/ras-related protein Rab-4B [Canis lupus familiaris]
gnl|UG|Ssc#S35166227	37	10.65	13	3.72	7	2.1	"Sus scrofa mRNA, clone:OVRM10219G05, expressed in ovary /gb=AK236714 /gi=115553511 /ug=Ssc.44378 /len=1874"	"GO:0033178//proton-transporting two-sector ATPase complex, catalytic domain;GO:0005753//mitochondrial proton-transporting ATP synthase complex"	GO:0042287//MHC protein binding;GO:0019829//cation-transporting ATPase activity;GO:0015078//hydrogen ion transmembrane transporter activity;GO:0032559;GO:0043498//cell surface binding	"GO:0009180;GO:0007275//multicellular organismal development;GO:0001935//endothelial cell proliferation;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0022900//electron transport chain;GO:0009207;GO:0015986//ATP synthesis coupled proton transport;GO:0006839//mitochondrial transport"	"gi|297591975|ref|NP_001172071.1|/0/ATP synthase subunit alpha, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S35168187	4	1.15	0	0	4	1.2	"Sus scrofa mRNA, clone:THY010052E09, expressed in thymus /gb=AK238967 /gi=115551503 /ug=Ssc.83316 /len=2201"	-	-	-	-
gnl|UG|Ssc#S34520817	6	1.73	6	1.72	0	0	"DB797666 full-length enriched swine cDNA library, adult immature dendritic cell Sus scrofa cDNA clone DCI010091F10 5', mRNA sequence /clone=DCI010091F10 /clone_end=5' /gb=DB797666 /gi=112755018 /ug=Ssc.28949 /len=726"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0043292//contractile fiber;GO:0016020//membrane	"GO:0004114//3',5'-cyclic-nucleotide phosphodiesterase activity;GO:0019904//protein domain specific binding;GO:0016208//AMP binding"	GO:0006195//purine nucleotide catabolic process;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0006461//protein complex assembly;GO:0010627//regulation of intracellular protein kinase cascade;GO:0006936//muscle contraction	gi|309262991|ref|XP_003085940.1|/4.51343e-21/PREDICTED: hypothetical protein LOC105178 [Mus musculus]
gnl|UG|Ssc#S58306030	24	6.91	60	17.15	53	15.93	"PREDICTED: Sus scrofa Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans) (SMG7), mRNA /cds=p(20,3529) /gb=XM_003130368 /gi=311264952 /ug=Ssc.38871 /len=5836"	GO:0043231//intracellular membrane-bounded organelle;GO:0005856//cytoskeleton	GO:0019903//protein phosphatase binding	GO:0016311//dephosphorylation;GO:0006405//RNA export from nucleus;GO:0000956//nuclear-transcribed mRNA catabolic process	gi|311264953|ref|XP_003130416.1|/0/PREDICTED: protein SMG7-like [Sus scrofa]
gnl|UG|Ssc#S58308823	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa f-box only protein 6-like, transcript variant 2 (LOC100524148), mRNA /cds=p(287,1084) /gb=XM_003127569 /gi=311258457 /ug=Ssc.54679 /len=2019"	GO:0031461//cullin-RING ubiquitin ligase complex	GO:0005515//protein binding;GO:0019787//small conjugating protein ligase activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0006259//DNA metabolic process;GO:0006974//response to DNA damage stimulus	gi|311258456|ref|XP_003127616.1|/1.29205e-160/PREDICTED: f-box only protein 6-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55326651	37	10.65	9	2.57	24	7.21	"Sus scrofa mRNA, clone:OVRM10039B12, expressed in ovary /gb=AK348000 /gi=288778175 /ug=Ssc.84028 /len=2432"	GO:0044429//mitochondrial part	"GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups"	GO:0006086//acetyl-CoA biosynthetic process from pyruvate	gi|311247991|ref|XP_003122917.1|/0/PREDICTED: pyruvate dehydrogenase protein X component-like [Sus scrofa]
gnl|UG|Ssc#S58305107	22	6.33	7	2	17	5.11	"PREDICTED: Sus scrofa coiled-coil domain-containing protein 47-like (LOC100513109), mRNA /cds=p(217,1677) /gb=XM_003131291 /gi=311266966 /ug=Ssc.17474 /len=1677"	GO:0042598//vesicular fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0046872//metal ion binding	GO:0006984//ER-nucleus signaling pathway;GO:0055065//metal ion homeostasis;GO:0007275//multicellular organismal development	gi|311266967|ref|XP_003131339.1|/0/PREDICTED: LOW QUALITY PROTEIN: coiled-coil domain-containing protein 47-like [Sus scrofa]
gnl|UG|Ssc#S58303395	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa THAP domain-containing protein 7-like, transcript variant 1 (LOC100526013), mRNA /cds=p(49,990) /gb=XM_003132998 /gi=311271062 /ug=Ssc.23761 /len=1120"	GO:0043232;GO:0005635//nuclear envelope;GO:0016604//nuclear body	GO:0043169//cation binding;GO:0030528//transcription regulator activity;GO:0019904//protein domain specific binding;GO:0003676//nucleic acid binding	-	gi|311271063|ref|XP_003133046.1|/3.27761e-143/PREDICTED: THAP domain-containing protein 7-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58303347	42	12.09	17	4.86	42	12.62	"PREDICTED: Sus scrofa heterogeneous nuclear ribonucleoprotein H3-like, transcript variant 2 (LOC100155513), mRNA /cds=p(198,1238) /gb=XM_003133051 /gi=311271280 /ug=Ssc.13942 /len=2428"	GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding	GO:0000377	"gi|126272596|ref|XP_001369254.1|/5.87464e-54/PREDICTED: similar to heterogeneous nuclear ribonucleoprotein H3 (2H9), [Monodelphis domestica]"
gnl|UG|Ssc#S18548250	7	2.02	2	0.57	6	1.8	"BX916901 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0035.m.21 5prim, mRNA sequence /clone=scan0035.m.21 /clone_end=5' /gb=BX916901 /gi=90236064 /ug=Ssc.84904 /len=880"	GO:0031981//nuclear lumen;GO:0000785//chromatin	GO:0046914//transition metal ion binding;GO:0003712//transcription cofactor activity;GO:0004879//ligand-dependent nuclear receptor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding	GO:0032496//response to lipopolysaccharide;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0032846;GO:0048511//rhythmic process;GO:0009755//hormone-mediated signaling pathway;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0034122//negative regulation of toll-like receptor signaling pathway	"gi|291405975|ref|XP_002719395.1|/3.13898e-161/PREDICTED: nuclear receptor subfamily 1, group D, member 1 [Oryctolagus cuniculus]"
gnl|UG|Ssc#S58307405	7	2.02	19	5.43	16	4.81	"PREDICTED: Sus scrofa kelch-like 2, Mayven (Drosophila) (KLHL2), mRNA /cds=p(303,1892) /gb=XM_003128989 /gi=311262150 /ug=Ssc.5842 /len=2989"	GO:0032432//actin filament bundle	GO:0042802//identical protein binding;GO:0008092//cytoskeletal protein binding	GO:0015031//protein transport	gi|73978378|ref|XP_532713.2|/0/PREDICTED: similar to Kelch-like protein 2 (Actin-binding protein Mayven) [Canis familiaris]
gnl|UG|Ssc#S58308830	70	20.15	30	8.58	117	35.16	"PREDICTED: Sus scrofa mechanistic target of rapamycin (serine/threonine kinase) (MTOR), mRNA /cds=p(1,7434) /gb=XM_003127584 /gi=311258443 /ug=Ssc.1908 /len=8377"	GO:0000323//lytic vacuole;GO:0043005//neuron projection;GO:0043234//protein complex;GO:0012505//endomembrane system;GO:0031966//mitochondrial membrane;GO:0016604//nuclear body;GO:0000267//cell fraction;GO:0044297//cell body	GO:0004672//protein kinase activity;GO:0032559;GO:0005515//protein binding	GO:0009057//macromolecule catabolic process;GO:0001935//endothelial cell proliferation;GO:0005978//glycogen biosynthetic process;GO:0048017//inositol lipid-mediated signaling;GO:0043434//response to peptide hormone stimulus;GO:0003006//developmental process involved in reproduction;GO:0032094//response to food;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0001666//response to hypoxia;GO:0001934//positive regulation of protein phosphorylation;GO:0040007//growth;GO:0042992//negative regulation of transcription factor import into nucleus;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0010591//regulation of lamellipodium assembly;GO:0010507//negative regulation of autophagy;GO:0008361//regulation of cell size;GO:0001101//response to acid;GO:0032233//positive regulation of actin filament bundle assembly;GO:0030041//actin filament polymerization;GO:0006412//translation;GO:0032319//regulation of Rho GTPase activity;GO:0006635//fatty acid beta-oxidation;GO:0031294	gi|311258444|ref|XP_003127632.1|/0/PREDICTED: serine/threonine-protein kinase mTOR [Sus scrofa]
gnl|UG|Ssc#S46876233	153	44.05	86	24.58	97	29.15	"PREDICTED: Sus scrofa Sp3 transcription factor (SP3), mRNA /cds=p(1,2091) /gb=XM_001928783 /gi=311272653 /ug=Ssc.23242 /len=3520"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043566//structure-specific DNA binding	"GO:0001501//skeletal system development;GO:0006351//transcription, DNA-dependent;GO:0048048//embryonic eye morphogenesis;GO:0002573//myeloid leukocyte differentiation;GO:0030323//respiratory tube development;GO:0030218//erythrocyte differentiation;GO:0048609//multicellular organismal reproductive process;GO:0030098//lymphocyte differentiation;GO:0001825//blastocyst formation"	gi|311272654|ref|XP_001928818.2|/0/PREDICTED: transcription factor Sp3 [Sus scrofa]
gnl|UG|Ssc#S58312118	338	97.31	226	64.6	144	43.28	"PREDICTED: Sus scrofa actin, beta (ACTB), mRNA /cds=p(335,1462) /gb=XM_003124280 /gi=311250865 /ug=Ssc.10316 /len=2109"	GO:0035097//histone methyltransferase complex;GO:0043005//neuron projection;GO:0005856//cytoskeleton;GO:0044444//cytoplasmic part;GO:0000267//cell fraction;GO:0043189//H4/H2A histone acetyltransferase complex	GO:0008092//cytoskeletal protein binding;GO:0019900//kinase binding;GO:0005198//structural molecule activity;GO:0032559	GO:0051084//'de novo' posttranslational protein folding;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0006935//chemotaxis;GO:0045216//cell-cell junction organization;GO:0007599//hemostasis	gi|45269029|gb|AAS55927.1|/0/cytoskeletal beta actin [Sus scrofa]
gnl|UG|Ssc#S23213520	28	8.06	8	2.29	23	6.91	"Sus scrofa clone Clu_12124.scr.msk.p1.Contig3, mRNA sequence /gb=AY609457 /gi=52350742 /ug=Ssc.19316 /len=2222"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0016301//kinase activity;GO:0032559	GO:0032989;GO:0006605//protein targeting;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006996//organelle organization;GO:0022402//cell cycle process;GO:0045860//positive regulation of protein kinase activity;GO:0019217//regulation of fatty acid metabolic process;GO:0043066//negative regulation of apoptosis;GO:0000165//MAPKKK cascade	gi|300797207|ref|NP_001179010.1|/0/STE20-related kinase adapter protein beta [Bos taurus]
gnl|UG|Ssc#S17515625	34	9.79	24	6.86	10	3.01	"BX670194 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0034.i.16 3prim, mRNA sequence /clone=scac0034.i.16 /clone_end=3' /gb=BX670194 /gi=90238769 /ug=Ssc.94621 /len=1095"	GO:0031988//membrane-bounded vesicle;GO:0043231//intracellular membrane-bounded organelle;GO:0005856//cytoskeleton;GO:0042995//cell projection	GO:0048029//monosaccharide binding;GO:0016832//aldehyde-lyase activity;GO:0005515//protein binding	GO:0006007//glucose catabolic process;GO:0048545//response to steroid hormone stimulus;GO:0009206;GO:0051260//protein homooligomerization;GO:0019725//cellular homeostasis;GO:0014070//response to organic cyclic compound;GO:0002237//response to molecule of bacterial origin;GO:0006000//fructose metabolic process;GO:0006936//muscle contraction;GO:0006950//response to stress	gi|156120479|ref|NP_001095385.1|/7.56412e-81/fructose-bisphosphate aldolase C-A [Bos taurus]
gnl|UG|Ssc#S35171978	0	0	0	0	6	1.8	"Sus scrofa mRNA, clone:OVRM10021B12, expressed in ovary /gb=AK234833 /gi=115547857 /ug=Ssc.42363 /len=2100"	GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0032559;GO:0019899//enzyme binding	GO:0006605//protein targeting;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0051259//protein oligomerization;GO:0022402//cell cycle process;GO:0045860//positive regulation of protein kinase activity;GO:0019217//regulation of fatty acid metabolic process	gi|301778309|ref|XP_002924564.1|/0/PREDICTED: STE20-related kinase adapter protein alpha-like isoform 1 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S19546506	44	12.67	69	19.72	24	7.21	"952050 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN162646 /gi=46177076 /ug=Ssc.75712 /len=890"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0032559;GO:0019787//small conjugating protein ligase activity	GO:0000209//protein polyubiquitination;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0006513//protein monoubiquitination;GO:0007050//cell cycle arrest;GO:0016574//histone ubiquitination;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	gi|296472292|gb|DAA14407.1|/8.86752e-27/ubiquitin-conjugating enzyme E2E 1-like [Bos taurus]
gnl|UG|Ssc#S41658118	0	0	0	0	7	2.1	"Sus scrofa cell death-inducing DNA fragmentation factor-like effector a mRNA, complete cds /cds=p(11,670) /gb=EF394366 /gi=148529796 /ug=Ssc.20399 /len=958"	GO:0043231//intracellular membrane-bounded organelle;GO:0031967;GO:0044444//cytoplasmic part	GO:0042802//identical protein binding	"GO:0000737//DNA catabolic process, endonucleolytic;GO:0010884//positive regulation of lipid storage;GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0008629//induction of apoptosis by intracellular signals;GO:0001818//negative regulation of cytokine production;GO:0009895;GO:0050707//regulation of cytokine secretion;GO:0048871//multicellular organismal homeostasis"	gi|162951823|ref|NP_001106166.1|/1.13513e-114/cell death activator CIDE-A [Sus scrofa]
gnl|UG|Ssc#S35166916	12	3.45	50	14.29	13	3.91	"Sus scrofa mRNA, clone:THY010102D08, expressed in thymus /gb=AK239417 /gi=115552823 /ug=Ssc.7036 /len=1138"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|73997892|ref|XP_856189.1|/4.07748e-165/PREDICTED: similar to zinc finger protein 32 isoform 5 [Canis familiaris]
gnl|UG|Ssc#S55303991	3	0.86	0	0	3	0.9	"FS680030 full-length enriched swine cDNA library, adult longissimus Sus scrofa cDNA clone MLTL10019C07 5', mRNA sequence /clone=MLTL10019C07 /clone_end=5' /gb=FS680030 /gi=288305321 /ug=Ssc.77657 /len=641"	GO:0031674//I band;GO:0044446//intracellular organelle part;GO:0005634//nucleus	GO:0004672//protein kinase activity;GO:0008092//cytoskeletal protein binding	GO:0009888//tissue development;GO:0014866//skeletal myofibril assembly;GO:0006936//muscle contraction;GO:0050896//response to stimulus;GO:0048513//organ development;GO:0006468//protein phosphorylation;GO:0019222//regulation of metabolic process	gi|194222358|ref|XP_001917584.1|/3.39276e-117/PREDICTED: similar to titin [Equus caballus]
gnl|UG|Ssc#S58304650	25	7.2	8	2.29	44	13.22	"PREDICTED: Sus scrofa cooperator of PRMT5-like (LOC100524339), mRNA /cds=p(88,645) /gb=XM_003131747 /gi=311267906 /ug=Ssc.8524 /len=904"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	"GO:0034969//histone arginine methylation;GO:0006351//transcription, DNA-dependent"	gi|311267907|ref|XP_003131795.1|/5.51369e-108/PREDICTED: cooperator of PRMT5-like [Sus scrofa]
gnl|UG|Ssc#S55327239	11	3.17	0	0	7	2.1	"Sus scrofa mRNA, clone:OVR010028B01, expressed in ovary /gb=AK347410 /gi=288576817 /ug=Ssc.42235 /len=1914"	GO:0031224//intrinsic to membrane;GO:0031965//nuclear membrane;GO:0030016//myofibril;GO:0031981//nuclear lumen;GO:0034992//microtubule organizing center attachment site	GO:0008092//cytoskeletal protein binding	GO:0007010//cytoskeleton organization;GO:0043578;GO:0030154//cell differentiation;GO:0051647//nucleus localization	"gi|297467738|ref|XP_002705285.1|/9.56595e-166/PREDICTED: spectrin repeat containing, nuclear envelope 1, partial [Bos taurus]"
gnl|UG|Ssc#S36661962	7	2.02	0	0	3	0.9	"Sus scrofa ribose 5-phosphate isomerase-like protein mRNA, complete cds /cds=p(10,930) /gb=EF213106 /gi=124265187 /ug=Ssc.23972 /len=1211"	GO:0042598//vesicular fraction;GO:0044444//cytoplasmic part	"GO:0005529//sugar binding;GO:0016861//intramolecular oxidoreductase activity, interconverting aldoses and ketoses"	GO:0006014//D-ribose metabolic process;GO:0006098//pentose-phosphate shunt	gi|148232214|ref|NP_001090964.1|/7.38851e-160/ribose-5-phosphate isomerase [Sus scrofa]
gnl|UG|Ssc#S35173257	9	2.59	0	0	7	2.1	"Sus scrofa mRNA, clone:OVR010057G06, expressed in ovary /gb=AK234416 /gi=115546578 /ug=Ssc.58464 /len=1540"	GO:0005874//microtubule;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0046983//protein dimerization activity;GO:0005198//structural molecule activity	GO:0022402//cell cycle process;GO:0007010//cytoskeleton organization;GO:0043623//cellular protein complex assembly;GO:0009207;GO:0007017//microtubule-based process;GO:0006458//'de novo' protein folding	gi|114051854|ref|NP_001039875.1|/0/tubulin alpha-1D chain [Bos taurus]
gnl|UG|Ssc#S58302536	3	0.86	6	1.72	5	1.5	"PREDICTED: Sus scrofa cadherin 10, type 2 (T2-cadherin) (CDH10), mRNA /cds=p(1,2367) /gb=XM_003133860 /gi=311273523 /ug=Ssc.80079 /len=2841"	-	-	-	gi|311273524|ref|XP_003133908.1|/0/PREDICTED: cadherin-10-like [Sus scrofa]
gnl|UG|Ssc#S55327301	13	3.74	3	0.86	8	2.4	"Sus scrofa mRNA, clone:OVR010013G06, expressed in ovary /gb=AK347348 /gi=288576755 /ug=Ssc.16683 /len=1506"	-	-	-	-
gnl|UG|Ssc#S46877915	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa pim-1 oncogene (PIM1), mRNA /cds=p(1,942) /gb=XM_001929598 /gi=311260337 /ug=Ssc.93859 /len=942"	GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0004672//protein kinase activity;GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0032559	GO:0006915//apoptosis;GO:0032501//multicellular organismal process;GO:0043392//negative regulation of DNA binding;GO:0031657	gi|194040429|ref|XP_001929633.1|/0/PREDICTED: proto-oncogene serine/threonine-protein kinase pim-1 [Sus scrofa]
gnl|UG|Ssc#S46877341	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa ubiquitin thioesterase ZRANB1-like (LOC100155662), mRNA /cds=p(1,2127) /gb=XM_001929009 /gi=311271995 /ug=Ssc.18050 /len=3533"	GO:0005815//microtubule organizing center;GO:0031981//nuclear lumen;GO:0016234//inclusion body	GO:0070011;GO:0016790//thiolester hydrolase activity;GO:0046914//transition metal ion binding	GO:0016055//Wnt receptor signaling pathway;GO:0016579//protein deubiquitination	gi|194041637|ref|XP_001929044.1|/0/PREDICTED: ubiquitin thioesterase ZRANB1-like [Sus scrofa]
gnl|UG|Ssc#S55320525	16	4.61	2	0.57	17	5.11	"Sus scrofa mRNA, clone:LNG010102G11, expressed in lung /gb=AK345763 /gi=288784347 /ug=Ssc.5041 /len=2696"	GO:0005634//nucleus	GO:0005488//binding;GO:0016740//transferase activity	GO:0008283//cell proliferation;GO:0009987//cellular process	gi|311256287|ref|XP_003126580.1|/0/PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Sus scrofa]
gnl|UG|Ssc#S58311559	6	1.73	2	0.57	5	1.5	"PREDICTED: Sus scrofa probable cytosolic iron-sulfur protein assembly protein CIAO1-like (LOC100522605), mRNA /cds=p(120,1139) /gb=XM_003124827 /gi=311252019 /ug=Ssc.48469 /len=2135"	GO:0005819//spindle	GO:0005488//binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0031163;GO:0008283//cell proliferation;GO:0006355//regulation of transcription, DNA-dependent"	gi|311252020|ref|XP_003124875.1|/0/PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1-like [Sus scrofa]
gnl|UG|Ssc#S55325468	0	0	4	1.14	4	1.2	"Sus scrofa mRNA, clone:PTG010017F01, expressed in pituitary gland /gb=AK349183 /gi=288779358 /ug=Ssc.21570 /len=3719"	GO:0043234//protein complex;GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0005100//Rho GTPase activator activity;GO:0019887//protein kinase regulator activity	GO:0048468//cell development;GO:0033627//cell adhesion mediated by integrin;GO:0032321//positive regulation of Rho GTPase activity;GO:0006915//apoptosis;GO:0032515//negative regulation of phosphoprotein phosphatase activity;GO:0001932//regulation of protein phosphorylation;GO:0002260//lymphocyte homeostasis;GO:0050851//antigen receptor-mediated signaling pathway;GO:0007163//establishment or maintenance of cell polarity;GO:0043370;GO:0045582//positive regulation of T cell differentiation;GO:0002690//positive regulation of leukocyte chemotaxis;GO:0045577//regulation of B cell differentiation;GO:0030888//regulation of B cell proliferation;GO:0050766//positive regulation of phagocytosis;GO:0043376;GO:0030041//actin filament polymerization;GO:0042098//T cell proliferation;GO:0001818//negative regulation of cytokine production;GO:0045639//positive regulation of myeloid cell differentiation	gi|296211900|ref|XP_002752605.1|/0/PREDICTED: nck-associated protein 1-like isoform 1 [Callithrix jacchus]
gnl|UG|Ssc#S6061569	2	0.58	2	0.57	2	0.6	"MI-P-AY1-nrb-d-07-0-UI.s1 MI-P-AY1 Sus scrofa cDNA clone MI-P-AY1-nrb-d-07-0-UI 3', mRNA sequence /clone=MI-P-AY1-nrb-d-07-0-UI /clone_end=3' /gb=BF710981 /gi=12010458 /ug=Ssc.81609 /len=332"	GO:0031224//intrinsic to membrane	-	-	gi|301758924|ref|XP_002915308.1|/1.97113e-31/PREDICTED: transmembrane protein 39A-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S29973203	8	2.3	3	0.86	3	0.9	"PDUts1072C08 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1072C08 5' similar to homologue to ref|NM_014189.2| Homo sapiens adducin 1 (alpha) (ADD1), transcript variant 2, mRNA, mRNA sequence /clone=PDUts1072C08 /clone_end=5' /gb=CV869861 /gi=84123821 /ug=Ssc.42896 /len=631"	GO:0043232	GO:0043169//cation binding	GO:0030099//myeloid cell differentiation;GO:0043009//chordate embryonic development;GO:0001894//tissue homeostasis;GO:0032989;GO:0040007//growth;GO:0043170;GO:0019725//cellular homeostasis	"gi|148705512|gb|EDL37459.1|/2.89878e-81/adducin 1 (alpha), isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S58308846	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa calsyntenin 1 (CLSTN1), partial mRNA /cds=p(1,2852) /gb=XM_003127553 /gi=311258410 /ug=Ssc.16827 /len=4255"	-	-	-	-
gnl|UG|Ssc#S58313882	331	95.3	182	52.02	371	111.5	"PREDICTED: Sus scrofa UPF0696 protein C11orf68 homolog (LOC100516777), mRNA /cds=p(1,876) /gb=XM_003122554 /gi=311247265 /ug=Ssc.4744 /len=1521"	-	-	-	gi|311247266|ref|XP_003122602.1|/7.19568e-150/PREDICTED: UPF0696 protein C11orf68 homolog [Sus scrofa]
gnl|UG|Ssc#S35172154	5	1.44	2	0.57	7	2.1	"Sus scrofa mRNA, clone:ITT010039G04, expressed in intestine /gb=AK231339 /gi=115547681 /ug=Ssc.51859 /len=2743"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0042598//vesicular fraction	"GO:0030528//transcription regulator activity;GO:0016799//hydrolase activity, hydrolyzing N-glycosyl compounds;GO:0016829//lyase activity"	GO:0033189//response to vitamin A;GO:0048167//regulation of synaptic plasticity;GO:0050851//antigen receptor-mediated signaling pathway;GO:0043627//response to estrogen stimulus;GO:0050796//regulation of insulin secretion;GO:0019229//regulation of vasoconstriction;GO:0030888//regulation of B cell proliferation;GO:0051480//cytosolic calcium ion homeostasis;GO:0034097//response to cytokine stimulus;GO:0006917//induction of apoptosis;GO:0032845;GO:0016049//cell growth;GO:0022414//reproductive process;GO:0006979//response to oxidative stress	gi|311261891|ref|XP_003128911.1|/4.03111e-115/PREDICTED: ADP-ribosyl cyclase 1-like [Sus scrofa]
gnl|UG|Ssc#S20116150	0	0	0	0	0	0	"Sus scrofa mRNA for glycine receptor beta (GLRB gene) /cds=p(9,1502) /gb=AJ715855 /gi=47550386 /ug=Ssc.27599 /len=1502"	GO:0005626//insoluble fraction;GO:0034702;GO:0044459//plasma membrane part	GO:0005253//anion channel activity;GO:0004871//signal transducer activity;GO:0005231//excitatory extracellular ligand-gated ion channel activity;GO:0005237//inhibitory extracellular ligand-gated ion channel activity;GO:0016597//amino acid binding	GO:0048731;GO:0007338//single fertilization;GO:0015698//inorganic anion transport;GO:0050953//sensory perception of light stimulus;GO:0060004//reflex;GO:0051259//protein oligomerization;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0006873//cellular ion homeostasis;GO:0007270//nerve-nerve synaptic transmission;GO:0008344//adult locomotory behavior	gi|48374093|ref|NP_001001545.1|/0/glycine receptor subunit beta [Sus scrofa]
gnl|UG|Ssc#S55322685	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:DCI010035G02, expressed in dendritic cells (immature) /gb=AK344398 /gi=288782187 /ug=Ssc.8587 /len=2031"	-	-	-	-
gnl|UG|Ssc#S20939492	291	83.78	185	52.88	390	117.21	"AJ651215 CSEQRAN19 Sus scrofa cDNA clone C0003277_K12, mRNA sequence /clone=C0003277_K12 /gb=AJ651215 /gi=49333660 /ug=Ssc.85689 /len=534"	GO:0031981//nuclear lumen;GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|39645153|gb|AAH63811.1|/3.14561e-84/Ribosomal protein L4 [Rattus norvegicus]
gnl|UG|Ssc#S35171141	383	110.27	451	128.92	249	74.83	"Sus scrofa mRNA, clone:LNG010007F06, expressed in lung /gb=AK231683 /gi=115548698 /ug=Ssc.15456 /len=1791"	-	-	-	-
gnl|UG|Ssc#S20935342	14	4.03	4	1.14	15	4.51	"AJ647065 CSEQRAN19 Sus scrofa cDNA clone C0003104_I20, mRNA sequence /clone=C0003104_I20 /gb=AJ647065 /gi=49323910 /ug=Ssc.85490 /len=481"	GO:0031224//intrinsic to membrane	-	-	gi|157818433|ref|NP_001099649.1|/2.64909e-67/transmembrane protein 208 [Rattus norvegicus] 
gnl|UG|Ssc#S23695151	83	23.9	96	27.44	35	10.52	"1103621 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN106254 /gi=59781517 /ug=Ssc.5148 /len=888"	-	-	-	gi|148747419|ref|NP_001092067.1|/1.49035e-09/osteocrin [Sus scrofa]
gnl|UG|Ssc#S34520251	3	0.86	0	0	4	1.2	"DB797429 full-length enriched swine cDNA library, adult immature dendritic cell Sus scrofa cDNA clone DCI010089A07 5', mRNA sequence /clone=DCI010089A07 /clone_end=5' /gb=DB797429 /gi=112753593 /ug=Ssc.15368 /len=750"	-	-	-	-
gnl|UG|Ssc#S55834727	0	0	0	0	0	0	"Sus scrofa DNA-damage regulated autophagy modulator 1 (DRAM1) mRNA, complete cds /cds=p(162,878) /gb=HM046504 /gi=296874475 /ug=Ssc.61490 /len=947"	GO:0005764//lysosome;GO:0031224//intrinsic to membrane	-	GO:0012501//programmed cell death;GO:0044248//cellular catabolic process	gi|298231129|ref|NP_001177215.1|/9.66734e-135/DNA damage-regulated autophagy modulator protein 1 [Sus scrofa]
gnl|UG|Ssc#S58314577	24	6.91	45	12.86	12	3.61	"PREDICTED: Sus scrofa exocyst complex component 5-like (LOC100513903), partial mRNA /cds=p(1,2085) /gb=XM_003121827 /gi=311245564 /ug=Ssc.68834 /len=2085"	GO:0044444//cytoplasmic part	GO:0005515//protein binding	GO:0048193//Golgi vesicle transport;GO:0022406	"gi|311245565|ref|XP_003121875.1|/0/PREDICTED: LOW QUALITY PROTEIN: exocyst complex component 5-like, partial [Sus scrofa]"
gnl|UG|Ssc#S35166602	283	81.48	304	86.9	330	99.17	"Sus scrofa mRNA, clone:THY010126A08, expressed in thymus /gb=AK239723 /gi=115553137 /ug=Ssc.4629 /len=1623"	GO:0009898//internal side of plasma membrane;GO:0005856//cytoskeleton;GO:0016604//nuclear body;GO:0030427//site of polarized growth	GO:0003712//transcription cofactor activity;GO:0016564//transcription repressor activity;GO:0043565//sequence-specific DNA binding;GO:0005515//protein binding	GO:0061318;GO:0032583//regulation of gene-specific transcription	gi|311273514|ref|XP_003133903.1|/2.12915e-38/PREDICTED: brain acid soluble protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35172679	9	2.59	0	0	4	1.2	"Sus scrofa mRNA, clone:ITT010017H06, expressed in intestine /gb=AK231211 /gi=115547156 /ug=Ssc.51960 /len=1558"	-	GO:0008134//transcription factor binding	GO:0019221//cytokine-mediated signaling pathway;GO:0043433//negative regulation of transcription factor activity	gi|73992158|ref|XP_852352.1|/4.25551e-105/PREDICTED: similar to COMM domain containing 7 [Canis familiaris]
gnl|UG|Ssc#S58311766	10	2.88	0	0	2	0.6	"PREDICTED: Sus scrofa protein FAM100A-like (LOC100510896), mRNA /cds=p(745,1281) /gb=XM_003124631 /gi=311251586 /ug=Ssc.77318 /len=1281"	-	-	-	gi|311251587|ref|XP_003124679.1|/8.79026e-58/PREDICTED: protein FAM100A-like [Sus scrofa]
gnl|UG|Ssc#S29987571	0	0	0	0	0	0	"PDUts2063F12 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2063F12 5' similar to homologue to ref|NM_138906.1| Rattus norvegicus a disintegrin and metalloproteinase domain 6 (Adam6), mRNA, mRNA sequence /clone=PDUts2063F12 /clone_end=5' /gb=CX062045 /gi=84138187 /ug=Ssc.88532 /len=670"	-	GO:0046914//transition metal ion binding;GO:0004175//endopeptidase activity	GO:0007166//cell surface receptor linked signaling pathway;GO:0019538//protein metabolic process	gi|194238562|ref|XP_001490940.2|/2.21057e-85/PREDICTED: similar to cellular disintegrin ADAM 6e; tMDCIVe [Equus caballus]
gnl|UG|Ssc#S58302275	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa CCR4-NOT transcription complex subunit 8-like (LOC100525087), mRNA /cds=p(251,1129) /gb=XM_003134120 /gi=311274057 /ug=Ssc.54336 /len=2351"	GO:0005667//transcription factor complex;GO:0044444//cytoplasmic part	GO:0030528//transcription regulator activity;GO:0005488//binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;GO:0008283//cell proliferation"	gi|31542315|ref|NP_004770.4|/1.10911e-166/CCR4-NOT transcription complex subunit 8 [Homo sapiens]
gnl|UG|Ssc#S23212877	112	32.25	55	15.72	150	45.08	"Sus scrofa clone Clu_7733.scr.msk.p1.Contig1, mRNA sequence /gb=AY610131 /gi=52351701 /ug=Ssc.2809 /len=1184"	-	-	-	-
gnl|UG|Ssc#S23213367	24	6.91	17	4.86	23	6.91	"Sus scrofa clone Clu_20879.scr.msk.p1.Contig1, mRNA sequence /gb=AY609610 /gi=52351205 /ug=Ssc.58707 /len=3245"	GO:0031410//cytoplasmic vesicle;GO:0043231//intracellular membrane-bounded organelle	GO:0004857//enzyme inhibitor activity	-	gi|194036287|ref|XP_001925077.1|/8.96812e-85/PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member E [Sus scrofa]
gnl|UG|Ssc#S58311253	81	23.32	21	6	75	22.54	"PREDICTED: Sus scrofa endoplasmic reticulum lectin 1-like, transcript variant 1 (LOC100517335), mRNA /cds=p(135,1586) /gb=XM_003125147 /gi=311252640 /ug=Ssc.50581 /len=2431"	GO:0044432//endoplasmic reticulum part	GO:0005515//protein binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process	gi|311252641|ref|XP_003125195.1|/0/PREDICTED: endoplasmic reticulum lectin 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55322723	4	1.15	2	0.57	6	1.8	"Sus scrofa mRNA, clone:DCI010022H12, expressed in dendritic cells (immature) /gb=AK344360 /gi=288782149 /ug=Ssc.77066 /len=1810"	-	-	-	gi|300796582|ref|NP_001179491.1|/5.55962e-75/tctex1 domain-containing protein 1 [Bos taurus]
gnl|UG|Ssc#S35167660	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:THY010088A06, expressed in thymus /gb=AK239272 /gi=115552079 /ug=Ssc.11171 /len=1163"	GO:0009986//cell surface;GO:0031983//vesicle lumen;GO:0000323//lytic vacuole;GO:0044459//plasma membrane part;GO:0030425//dendrite;GO:0044297//cell body;GO:0044421//extracellular region part	"GO:0001882//nucleoside binding;GO:0046914//transition metal ion binding;GO:0016814//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines"	GO:0050856//regulation of T cell receptor signaling pathway;GO:0002027//regulation of heart rate;GO:0009113//purine base biosynthetic process;GO:0002467//germinal center formation;GO:0051241;GO:0046102;GO:0009217//purine deoxyribonucleoside triphosphate catabolic process;GO:0046090;GO:0031348//negative regulation of defense response;GO:0002901;GO:0001825//blastocyst formation;GO:0046085//adenosine metabolic process;GO:0009967//positive regulation of signal transduction;GO:0033077//T cell differentiation in thymus;GO:0048565//digestive tract development;GO:0070233//negative regulation of T cell apoptosis;GO:0045582//positive regulation of T cell differentiation;GO:0002313//mature B cell differentiation involved in immune response;GO:0000302//response to reactive oxygen species;GO:0030888//regulation of B cell proliferation;GO:0042749//regulation of circadian sleep/wake cycle;GO:0009127//purine nucleoside monophosphate biosynthetic process;GO:0002683;GO:0022407//regulation of cell-cell adhesion;GO:0006939//smooth muscle contraction;GO:0051048//negative regulation of secretion;GO:0045744//negative regulation of G-protein coupled receptor protein signaling pathway;GO:0048537//mucosal-associated lymphoid tissue development	"gi|119596310|gb|EAW75904.1|/6.7354e-155/adenosine deaminase, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S58309278	0	0	0	0	0	0	"PREDICTED: Sus scrofa alpha-actinin-4-like (LOC100516739), mRNA /cds=p(23,316) /gb=XM_003127117 /gi=311257532 /ug=Ssc.27214 /len=1399"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen;GO:0042995//cell projection;GO:0044444//cytoplasmic part;GO:0032432//actin filament bundle	GO:0046872//metal ion binding;GO:0003779//actin binding	GO:0048523//negative regulation of cellular process;GO:0007015//actin filament organization;GO:0045807//positive regulation of endocytosis	gi|301780948|ref|XP_002925887.1|/7.33088e-53/PREDICTED: alpha-actinin-4-like isoform 5 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46877924	6	1.73	0	0	0	0	"PREDICTED: Sus scrofa serine/threonine kinase 38 (STK38), mRNA /cds=p(274,1671) /gb=XM_001929552 /gi=311260321 /ug=Ssc.6907 /len=3561"	GO:0035097//histone methyltransferase complex	GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0019901//protein kinase binding;GO:0032559	GO:0035556//intracellular signal transduction;GO:0043405//regulation of MAP kinase activity	gi|73972712|ref|XP_538887.2|/0/PREDICTED: similar to Serine/threonine-protein kinase 38 (NDR1 protein kinase) (Nuclear Dbf2-related kinase 1) [Canis familiaris]
gnl|UG|Ssc#S55325221	0	0	0	0	0	0	"Sus scrofa mRNA, clone:ADR010006G10, expressed in adrenal gland /gb=AK343236 /gi=288779651 /ug=Ssc.74881 /len=1744"	-	-	-	gi|149033545|gb|EDL88343.1|/2.41678e-27/rCG61168 [Rattus norvegicus]
gnl|UG|Ssc#S35174269	37	10.65	6	1.72	24	7.21	"Sus scrofa mRNA, clone:AMP010025B09, expressed in alveolar macrophage /gb=AK230681 /gi=115545566 /ug=Ssc.16654 /len=2829"	-	-	-	-
gnl|UG|Ssc#S58309877	25	7.2	2	0.57	19	5.71	"PREDICTED: Sus scrofa atrophin-1-like (LOC100153709), mRNA /cds=p(167,3547) /gb=XM_003126540 /gi=311256250 /ug=Ssc.61572 /len=4066"	GO:0044424//intracellular part	GO:0005515//protein binding	GO:0007399//nervous system development;GO:0050794//regulation of cellular process;GO:0008152//metabolic process	gi|311256251|ref|XP_003126588.1|/0/PREDICTED: LOW QUALITY PROTEIN: atrophin-1-like [Sus scrofa]
gnl|UG|Ssc#S35166005	26	7.49	15	4.29	19	5.71	"Sus scrofa mRNA, clone:UTR010010C02, expressed in uterus /gb=AK239909 /gi=115553722 /ug=Ssc.54252 /len=1831"	GO:0044444//cytoplasmic part	GO:0008905;GO:0032561	GO:0009226//nucleotide-sugar biosynthetic process;GO:0006487//protein N-linked glycosylation	gi|296490329|gb|DAA32442.1|/0/GDP-mannose pyrophosphorylase A [Bos taurus]
gnl|UG|Ssc#S58305855	2	0.58	3	0.86	5	1.5	"PREDICTED: Sus scrofa pyrroline-5-carboxylate reductase 2-like (LOC100524702), mRNA /cds=p(142,1104) /gb=XM_003130542 /gi=311265306 /ug=Ssc.6450 /len=1593"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016646//oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"	GO:0006560//proline metabolic process;GO:0006979//response to oxidative stress	gi|311265307|ref|XP_003130590.1|/1.38928e-167/PREDICTED: pyrroline-5-carboxylate reductase 2-like [Sus scrofa]
gnl|UG|Ssc#S20935454	0	0	7	2	0	0	"AJ647177 CSEQRAN19 Sus scrofa cDNA clone C0003104_P06, mRNA sequence /clone=C0003104_P06 /gb=AJ647177 /gi=49324022 /ug=Ssc.74045 /len=499"	-	-	-	"gi|149044495|gb|EDL97754.1|/5.43327e-37/similar to RIKEN cDNA 5830433M19, isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S55318272	56	16.12	10	2.86	9	2.7	"Sus scrofa mRNA, clone:MLTL10003D02, expressed in longissimus /gb=AK347094 /gi=288786612 /ug=Ssc.51028 /len=1979"	GO:0044422;GO:0043232;GO:0044444//cytoplasmic part	GO:0005515//protein binding	GO:0030239//myofibril assembly;GO:0065007//biological regulation;GO:0032501//multicellular organismal process	gi|301766892|ref|XP_002918867.1|/0/PREDICTED: LOW QUALITY PROTEIN: titin-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58309285	0	0	0	0	0	0	"PREDICTED: Sus scrofa protein FAM98C-like (LOC100516018), mRNA /cds=p(1,1074) /gb=XM_003127113 /gi=311257518 /ug=Ssc.26259 /len=1256"	-	-	-	gi|311257519|ref|XP_003127161.1|/2.57646e-155/PREDICTED: protein FAM98C-like [Sus scrofa]
gnl|UG|Ssc#S58304561	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa max-binding protein MNT-like (LOC100512629), mRNA /cds=p(1,1758) /gb=XM_003131836 /gi=311268090 /ug=Ssc.31186 /len=1758"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006915//apoptosis;GO:0007049//cell cycle;GO:0032501//multicellular organismal process;GO:0007568//aging;GO:0006351//transcription, DNA-dependent;GO:0008283//cell proliferation"	gi|311268091|ref|XP_003131884.1|/0/PREDICTED: max-binding protein MNT-like [Sus scrofa]
gnl|UG|Ssc#S34509258	4	1.15	9	2.57	0	0	"DB806249 full-length enriched swine cDNA library, adult alveolar macrophage Sus scrofa cDNA 3', mRNA sequence /clone=AMP010044G02 /clone_end=3' /gb=DB806249 /gi=112773323 /ug=Ssc.89780 /len=760"	-	-	-	-
gnl|UG|Ssc#S35170984	10	2.88	25	7.15	12	3.61	"Sus scrofa mRNA, clone:OVRM10063A10, expressed in ovary /gb=AK235258 /gi=115548855 /ug=Ssc.14117 /len=1746"	GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity	GO:0009966//regulation of signal transduction;GO:0035556//intracellular signal transduction	gi|300794788|ref|NP_001179659.1|/0/DEP domain-containing protein 7 [Bos taurus]
gnl|UG|Ssc#S58311200	0	0	3	0.86	2	0.6	"PREDICTED: Sus scrofa cytochrome c oxidase subunit 7A-related protein, mitochondrial-like (LOC100516606), mRNA /cds=p(1,645) /gb=XM_003125203 /gi=311252750 /ug=Ssc.6868 /len=1397"	GO:0005743//mitochondrial inner membrane	-	GO:0022900//electron transport chain	"gi|311252751|ref|XP_003125251.1|/5.50608e-109/PREDICTED: cytochrome c oxidase subunit 7A-related protein, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S26712944	0	0	5	1.43	9	2.7	"AJ949028 KN404_1 Sus scrofa cDNA clone C0007739f10 3', mRNA sequence /clone=C0007739f10 /clone_end=3' /gb=AJ949028 /gi=74365844 /ug=Ssc.26746 /len=912"	GO:0016604//nuclear body	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0035258//steroid hormone receptor binding;GO:0019787//small conjugating protein ligase activity	GO:0030278//regulation of ossification;GO:0033144//negative regulation of steroid hormone receptor signaling pathway;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0048522;GO:0032446//protein modification by small protein conjugation	gi|301765504|ref|XP_002918170.1|/3.10333e-58/PREDICTED: e3 SUMO-protein ligase PIAS2-like isoform 1 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S41578630	11	3.17	13	3.72	15	4.51	"Sus scrofa canopy 3 homolog (zebrafish) (CNPY3), mRNA /cds=p(128,979) /gb=NM_001110428 /gi=160333765 /ug=Ssc.30552 /len=2608"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	GO:0006952//defense response	gi|160333766|ref|NP_001103898.1|/2.08962e-121/protein canopy homolog 3 precursor [Sus scrofa]
gnl|UG|Ssc#S58307448	5	1.44	2	0.57	4	1.2	"PREDICTED: Sus scrofa GUF1 GTPase homolog (S. cerevisiae) (GUF1), mRNA /cds=p(1,2010) /gb=XM_003128951 /gi=311262062 /ug=Ssc.13897 /len=2130"	GO:0043231//intracellular membrane-bounded organelle;GO:0019866//organelle inner membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0009207;GO:0010467//gene expression	gi|311262063|ref|XP_003128999.1|/0/PREDICTED: GTP-binding protein GUF1 homolog [Sus scrofa]
gnl|UG|Ssc#S35170891	182	52.4	180	51.45	176	52.89	"Sus scrofa mRNA, clone:OVRM10072A08, expressed in ovary /gb=AK235351 /gi=115548948 /ug=Ssc.1361 /len=1262"	GO:0005789//endoplasmic reticulum membrane	GO:0004576//oligosaccharyl transferase activity	GO:0006487//protein N-linked glycosylation	gi|297663310|ref|XP_002810117.1|/1.09316e-28/PREDICTED: keratinocyte-associated protein 2-like isoform 1 [Pongo abelii]
gnl|UG|Ssc#S58305748	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa sigma non-opioid intracellular receptor 1-like, transcript variant 1 (LOC100520799), mRNA /cds=p(151,822) /gb=XM_003130650 /gi=311265530 /ug=Ssc.16410 /len=1671"	-	-	-	-
gnl|UG|Ssc#S58303466	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3-like (LOC100519625), mRNA /cds=p(32,979) /gb=XM_003132924 /gi=311270788 /ug=Ssc.4963 /len=3763"	GO:0031981//nuclear lumen;GO:0031461//cullin-RING ubiquitin ligase complex;GO:0005887//integral to plasma membrane	GO:0019787//small conjugating protein ligase activity;GO:0005267//potassium channel activity	GO:0006511//ubiquitin-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation;GO:0034220//ion transmembrane transport;GO:0030001//metal ion transport	gi|301771730|ref|XP_002921279.1|/3.32874e-155/PREDICTED: BTB/POZ domain-containing protein KCTD10-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58308920	97	27.93	145	41.45	24	7.21	"PREDICTED: Sus scrofa zinc finger protein 787-like (LOC100521379), mRNA /cds=p(1,1086) /gb=XM_003127483 /gi=311258260 /ug=Ssc.12694 /len=1343"	GO:0005622//intracellular	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding	-	gi|311258261|ref|XP_003127531.1|/1.19223e-153/PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 787-like [Sus scrofa]
gnl|UG|Ssc#S35169839	5	1.44	0	0	2	0.6	"Sus scrofa mRNA, clone:LNG010110B06, expressed in lung /gb=AK232235 /gi=115550000 /ug=Ssc.15704 /len=2236"	-	-	-	-
gnl|UG|Ssc#S35172605	9	2.59	3	0.86	13	3.91	"Sus scrofa mRNA, clone:OVR010094F08, expressed in ovary /gb=AK234603 /gi=115547230 /ug=Ssc.2093 /len=2356"	GO:0032991//macromolecular complex;GO:0005624//membrane fraction;GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0005488//binding;GO:0005092//GDP-dissociation inhibitor activity	GO:0006810//transport;GO:0035556//intracellular signal transduction;GO:0010038//response to metal ion;GO:0043087//regulation of GTPase activity;GO:0009966//regulation of signal transduction	"gi|148697875|gb|EDL29822.1|/0/guanosine diphosphate (GDP) dissociation inhibitor 1, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S35171011	6	1.73	0	0	2	0.6	"Sus scrofa mRNA, clone:LNG010056G05, expressed in lung /gb=AK231943 /gi=115548828 /ug=Ssc.78927 /len=1851"	GO:0031224//intrinsic to membrane	-	-	gi|117306407|gb|AAI26722.1|/0/SERINC2 protein [Bos taurus]
gnl|UG|Ssc#S58305037	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein C17orf53-like (LOC100514980), mRNA /cds=p(1,1875) /gb=XM_003131368 /gi=311267108 /ug=Ssc.80624 /len=1875"	-	-	-	gi|311267109|ref|XP_003131416.1|/0/PREDICTED: uncharacterized protein C17orf53-like [Sus scrofa]
gnl|UG|Ssc#S6008197	7	2.02	0	0	6	1.8	"324817 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BG610272 /gi=13660251 /ti=448054468 /ug=Ssc.78824 /len=570"	GO:0016020//membrane	-	-	"gi|119571164|gb|EAW50779.1|/3.82348e-68/porcupine homolog (Drosophila), isoform CRA_c [Homo sapiens]"
gnl|UG|Ssc#S58311953	7	2.02	3	0.86	12	3.61	"PREDICTED: Sus scrofa sulfatase-modifying factor 2-like, transcript variant 1 (LOC100518241), mRNA /cds=p(49,954) /gb=XM_003124446 /gi=311251201 /ug=Ssc.28381 /len=1711"	GO:0044432//endoplasmic reticulum part	GO:0042802//identical protein binding;GO:0043169//cation binding	-	gi|311251202|ref|XP_003124494.1|/6.15673e-169/PREDICTED: sulfatase-modifying factor 2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S26720972	0	0	0	0	4	1.2	"AJ957056 KN404_2 Sus scrofa cDNA clone C0007750l03 3', mRNA sequence /clone=C0007750l03 /clone_end=3' /gb=AJ957056 /gi=74373872 /ug=Ssc.59544 /len=612"	GO:0043231//intracellular membrane-bounded organelle;GO:0031371//ubiquitin conjugating enzyme complex;GO:0044444//cytoplasmic part	GO:0032182//small conjugating protein binding;GO:0000166//nucleotide binding;GO:0019787//small conjugating protein ligase activity	"GO:0000209//protein polyubiquitination;GO:0000725//recombinational repair;GO:0010638;GO:0031398//positive regulation of protein ubiquitination;GO:0050851//antigen receptor-mediated signaling pathway;GO:0051091//positive regulation of transcription factor activity;GO:0002224//toll-like receptor signaling pathway;GO:0016574//histone ubiquitination;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0006282//regulation of DNA repair;GO:0000738//DNA catabolic process, exonucleolytic;GO:0019941//modification-dependent protein catabolic process"	gi|73989732|ref|XP_534224.2|/1.91521e-48/PREDICTED: similar to ubiquitin-conjugating enzyme E2N [Canis familiaris]
gnl|UG|Ssc#S35169369	161	46.35	70	20.01	98	29.45	"Sus scrofa mRNA, clone:THY010022H06, expressed in thymus /gb=AK238735 /gi=115550470 /ug=Ssc.20426 /len=1252"	GO:0031674//I band	GO:0043169//cation binding;GO:0051540;GO:0019901//protein kinase binding;GO:0015036//disulfide oxidoreductase activity	GO:0003300//cardiac muscle hypertrophy;GO:0008016//regulation of heart contraction;GO:0019725//cellular homeostasis	gi|311272045|ref|XP_003133283.1|/8.75254e-172/PREDICTED: glutaredoxin-3-like [Sus scrofa]
gnl|UG|Ssc#S58304744	328	94.43	285	81.47	285	85.65	"PREDICTED: Sus scrofa myotubularin-related protein 4-like (LOC100517493), mRNA /cds=p(1,3642) /gb=XM_003131656 /gi=311267712 /ug=Ssc.44458 /len=5783"	GO:0044424//intracellular part	GO:0046914//transition metal ion binding;GO:0004721//phosphoprotein phosphatase activity	GO:0006470//protein dephosphorylation	gi|311267713|ref|XP_003131704.1|/0/PREDICTED: myotubularin-related protein 4-like [Sus scrofa]
gnl|UG|Ssc#S58301380	83	23.9	7	2	66	19.83	"PREDICTED: Sus scrofa mid1-interacting protein 1-like (LOC100526197), mRNA /cds=p(517,1065) /gb=XM_003135012 /gi=311276135 /ug=Ssc.82866 /len=2135"	GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton;GO:0044444//cytoplasmic part	GO:0005515//protein binding	GO:0007019//microtubule depolymerization;GO:0043623//cellular protein complex assembly;GO:0046889//positive regulation of lipid biosynthetic process;GO:0043085//positive regulation of catalytic activity	gi|311276136|ref|XP_003135060.1|/1.31425e-94/PREDICTED: mid1-interacting protein 1-like [Sus scrofa]
gnl|UG|Ssc#S20936626	69	19.87	26	7.43	36	10.82	"AJ648349 CSEQRAN19 Sus scrofa cDNA clone C0003264_G11, mRNA sequence /clone=C0003264_G11 /gb=AJ648349 /gi=49325194 /ug=Ssc.74114 /len=459"	GO:0032991//macromolecular complex;GO:0044425//membrane part;GO:0042598//vesicular fraction;GO:0005783//endoplasmic reticulum;GO:0030141//stored secretory granule;GO:0044421//extracellular region part	GO:0005515//protein binding;GO:0046625//sphingolipid binding;GO:0004091//carboxylesterase activity	GO:0044241//lipid digestion;GO:0006672//ceramide metabolic process;GO:0007589//body fluid secretion;GO:0016042//lipid catabolic process;GO:0006639//acylglycerol metabolic process;GO:0008203//cholesterol metabolic process;GO:0051969	"gi|149039187|gb|EDL93407.1|/1.3793e-72/carboxyl ester lipase, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S58302364	4	1.15	0	0	3	0.9	"PREDICTED: Sus scrofa microtubule-associated protein 1B (MAP1B), mRNA /cds=p(215,7639) /gb=XM_003134032 /gi=311273874 /ug=Ssc.27009 /len=7722"	GO:0030427//site of polarized growth;GO:0043005//neuron projection;GO:0016020//membrane;GO:0044430//cytoskeletal part;GO:0000267//cell fraction;GO:0015630//microtubule cytoskeleton;GO:0043025//neuronal cell body;GO:0044444//cytoplasmic part	GO:0008289//lipid binding;GO:0015631//tubulin binding	"GO:0030307//positive regulation of cell growth;GO:0045597//positive regulation of cell differentiation;GO:0051914;GO:0043627//response to estrogen stimulus;GO:0048675//axon extension;GO:0031103//axon regeneration;GO:0031112;GO:0033273//response to vitamin;GO:0034643//establishment of mitochondrion localization, microtubule-mediated;GO:0007019//microtubule depolymerization;GO:0032386//regulation of intracellular transport;GO:0030010//establishment of cell polarity;GO:0009636//response to toxin"	gi|311273875|ref|XP_003134080.1|/0/PREDICTED: microtubule-associated protein 1B-like [Sus scrofa]
gnl|UG|Ssc#S55327560	8	2.3	0	0	5	1.5	"Sus scrofa missing oocyte, meiosis regulator-like protein (MIOS) mRNA, complete cds /cds=p(285,2912) /gb=GU373700 /gi=285818453 /ug=Ssc.14071 /len=3060"	-	-	-	gi|305855212|ref|NP_001182282.1|/0/WD repeat-containing protein mio [Sus scrofa]
gnl|UG|Ssc#S20935400	45	12.96	55	15.72	55	16.53	"AJ647123 CSEQRAN19 Sus scrofa cDNA clone C0003104_M11, mRNA sequence /clone=C0003104_M11 /gb=AJ647123 /gi=49323968 /ug=Ssc.85492 /len=512"	GO:0031252//cell leading edge;GO:0044444//cytoplasmic part	GO:0005102//receptor binding	GO:0048870//cell motility;GO:0035556//intracellular signal transduction;GO:0031589//cell-substrate adhesion;GO:0007166//cell surface receptor linked signaling pathway	gi|157822019|ref|NP_001100189.1|/1.14266e-55/integrin beta-1-binding protein 1 [Rattus norvegicus]
gnl|UG|Ssc#S58302980	23	6.62	60	17.15	14	4.21	"PREDICTED: Sus scrofa glycerol-3-phosphate dehydrogenase (MGPD), mRNA /cds=p(20,1222) /gb=XM_003133416 /gi=311272483 /ug=Ssc.10763 /len=2510"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0019866//organelle inner membrane	"GO:0052590//sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity;GO:0046872//metal ion binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"	GO:0006629//lipid metabolic process;GO:0006071//glycerol metabolic process;GO:0019674//NAD metabolic process;GO:0006006//glucose metabolic process	"gi|311272484|ref|XP_003133464.1|/0/PREDICTED: glycerol-3-phosphate dehydrogenase, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S19546641	0	0	2	0.57	0	0	"952199 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN162781 /gi=46177211 /ug=Ssc.18474 /len=871"	GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0030695//GTPase regulator activity;GO:0008135//translation factor activity, nucleic acid binding"	GO:0009725//response to hormone stimulus;GO:0009746;GO:0032055//negative regulation of translation in response to stress;GO:0021782//glial cell development	"gi|291399024|ref|XP_002715189.1|/1.8886e-102/PREDICTED: eukaryotic translation initiation factor 2B, subunit 3 gamma [Oryctolagus cuniculus]"
gnl|UG|Ssc#S58311708	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa phosphatidylinositol N-acetylglucosaminyltransferase subunit Q-like (LOC100518958), mRNA /cds=p(1,1893) /gb=XM_003124667 /gi=311251705 /ug=Ssc.55728 /len=3065"	GO:0031090//organelle membrane;GO:0031224//intrinsic to membrane	GO:0008375//acetylglucosaminyltransferase activity	GO:0006506//GPI anchor biosynthetic process	gi|311251706|ref|XP_003124715.1|/0/PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit Q-like [Sus scrofa]
gnl|UG|Ssc#S58310123	6	1.73	0	0	6	1.8	"PREDICTED: Sus scrofa timeless homolog (Drosophila) (TIMELESS), mRNA /cds=p(106,3726) /gb=XM_003126284 /gi=311255690 /ug=Ssc.28666 /len=3726"	GO:0000785//chromatin;GO:0043231//intracellular membrane-bounded organelle	GO:0046983//protein dimerization activity;GO:0042802//identical protein binding	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0048729//tissue morphogenesis;GO:0008283//cell proliferation;GO:0010564//regulation of cell cycle process;GO:0030323//respiratory tube development;GO:0009628//response to abiotic stimulus;GO:0048754//branching morphogenesis of a tube;GO:0033554//cellular response to stress;GO:0000087//M phase of mitotic cell cycle;GO:0007623//circadian rhythm	gi|311255691|ref|XP_003126332.1|/0/PREDICTED: protein timeless homolog [Sus scrofa]
gnl|UG|Ssc#S58312618	4	1.15	7	2	18	5.41	"PREDICTED: Sus scrofa arrestin domain containing 3 (ARRDC3), mRNA /cds=p(221,1465) /gb=XM_003123783 /gi=311249839 /ug=Ssc.4550 /len=4158"	GO:0044424//intracellular part	GO:0005488//binding	GO:0023052//signaling	gi|7243133|dbj|BAA92614.1|/0/KIAA1376 protein [Homo sapiens]
gnl|UG|Ssc#S58312353	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa RELT-like protein 2-like (LOC100519540), mRNA /cds=p(414,1331) /gb=XM_003124038 /gi=311250385 /ug=Ssc.24391 /len=1331"	GO:0016020//membrane;GO:0005578//proteinaceous extracellular matrix	GO:0005515//protein binding	GO:0010810	gi|311250386|ref|XP_003124086.1|/1.10685e-135/PREDICTED: RELT-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35165149	3	0.86	16	4.57	7	2.1	"Sus scrofa mRNA, clone:PBL010066F10, expressed in periphral blood mononuclear cell /gb=AK236987 /gi=115554577 /ug=Ssc.30650 /len=2555"	-	-	-	gi|4589682|dbj|BAA76860.1|/6.51464e-27/KIAA1016 protein [Homo sapiens]
gnl|UG|Ssc#S34495951	0	0	0	0	0	0	"DB809588 full-length enriched swine cDNA library, adult liver Sus scrofa cDNA 3', mRNA sequence /clone=LVRM10077H03 /clone_end=3' /gb=DB809588 /gi=112753257 /ug=Ssc.82391 /len=693"	GO:0043231//intracellular membrane-bounded organelle	GO:0004312//fatty acid synthase activity	GO:0006633//fatty acid biosynthetic process;GO:0006732//coenzyme metabolic process	"gi|149729674|ref|XP_001493918.1|/7.13955e-98/PREDICTED: similar to 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial precursor (Beta-ketoacyl-ACP synthase) [Equus caballus]"
gnl|UG|Ssc#S55326587	52	14.97	101	28.87	118	35.46	"Sus scrofa mRNA, clone:OVRM10056B03, expressed in ovary /gb=AK348064 /gi=288778239 /ug=Ssc.55266 /len=1440"	-	-	-	-
gnl|UG|Ssc#S35169549	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10113E09, expressed in ovary /gb=AK235769 /gi=115550290 /ug=Ssc.31514 /len=2222"	GO:0015630//microtubule cytoskeleton	GO:0046872//metal ion binding	-	gi|126290248|ref|XP_001367643.1|/1.95353e-48/PREDICTED: similar to echinoderm microtubule associated protein like 1 isoform 2 [Monodelphis domestica]
gnl|UG|Ssc#S58301511	3	0.86	6	1.72	3	0.9	"PREDICTED: Sus scrofa calcium/calmodulin-dependent protein kinase type II subunit beta-like (LOC100516166), mRNA /cds=p(1,633) /gb=XM_003134894 /gi=311275830 /ug=Ssc.26716 /len=859"	GO:0031981//nuclear lumen;GO:0016020//membrane;GO:0044430//cytoskeletal part;GO:0030139//endocytic vesicle;GO:0043234//protein complex	GO:0005515//protein binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559	"GO:0048168//regulation of neuronal synaptic plasticity;GO:0002029//desensitization of G-protein coupled receptor protein signaling pathway;GO:0008624//induction of apoptosis by extracellular signals;GO:0019221//cytokine-mediated signaling pathway;GO:0006468//protein phosphorylation;GO:0010038//response to metal ion;GO:0070838//divalent metal ion transport;GO:0045836//positive regulation of meiosis;GO:0007271//synaptic transmission, cholinergic;GO:0050905//neuromuscular process"	gi|311275831|ref|XP_003134942.1|/9.80487e-112/PREDICTED: calcium/calmodulin-dependent protein kinase type II subunit beta-like [Sus scrofa]
gnl|UG|Ssc#S35167947	2	0.58	0	0	4	1.2	"Sus scrofa mRNA, clone:OVRM10162H07, expressed in ovary /gb=AK236198 /gi=115551792 /ug=Ssc.5604 /len=2581"	GO:0032991//macromolecular complex;GO:0044431//Golgi apparatus part;GO:0031091//platelet alpha granule;GO:0031090//organelle membrane;GO:0012505//endomembrane system;GO:0044421//extracellular region part	GO:0061135;GO:0005515//protein binding;GO:0046872//metal ion binding	GO:0007599//hemostasis;GO:0006887//exocytosis;GO:0050817;GO:0002376//immune system process;GO:0018200;GO:0045807//positive regulation of endocytosis;GO:0001775//cell activation;GO:0002237//response to molecule of bacterial origin;GO:0010466//negative regulation of peptidase activity	gi|904141|gb|AAA70382.1|/0/protein S [Sus scrofa]
gnl|UG|Ssc#S58311504	5	1.44	15	4.29	6	1.8	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 5B (EIF5B), mRNA /cds=p(174,3833) /gb=XM_003124891 /gi=311252129 /ug=Ssc.9300 /len=3833"	GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding;GO:0000166//nucleotide binding"	GO:0006413//translational initiation	gi|311252130|ref|XP_003124939.1|/0/PREDICTED: eukaryotic translation initiation factor 5B-like [Sus scrofa]
gnl|UG|Ssc#S58302490	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa RPTOR independent companion of MTOR, complex 2 (RICTOR), mRNA /cds=p(17,5143) /gb=XM_003133905 /gi=311273617 /ug=Ssc.22743 /len=5143"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0043021//ribonucleoprotein binding	GO:0001934//positive regulation of protein phosphorylation;GO:0007275//multicellular organismal development;GO:0048017//inositol lipid-mediated signaling;GO:0001935//endothelial cell proliferation;GO:0030041//actin filament polymerization;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0031294;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0032319//regulation of Rho GTPase activity	gi|311273618|ref|XP_003133953.1|/0/PREDICTED: rapamycin-insensitive companion of mTOR-like [Sus scrofa]
gnl|UG|Ssc#S22363562	2	0.58	0	0	0	0	"Sus scrofa mitochondrial carnitine palmitoyltransferase I mRNA, complete cds; nuclear gene for mitochondrial product /cds=p(1,2319) /gb=AY642381 /gi=54399931 /ug=Ssc.15966 /len=2419"	-	-	-	-
gnl|UG|Ssc#S35170295	13	3.74	3	0.86	18	5.41	"Sus scrofa mRNA, clone:OVRM10093F05, expressed in ovary /gb=AK235566 /gi=115549544 /ug=Ssc.84279 /len=2232"	GO:0000808//origin recognition complex;GO:0031981//nuclear lumen	GO:0043565//sequence-specific DNA binding;GO:0005515//protein binding;GO:0032559	GO:0007050//cell cycle arrest;GO:0006259//DNA metabolic process;GO:0051320	gi|311264707|ref|XP_003130297.1|/0/PREDICTED: origin recognition complex subunit 5-like [Sus scrofa]
gnl|UG|Ssc#S46876766	4	1.15	0	0	3	0.9	"PREDICTED: Sus scrofa adaptor-related protein complex 3, mu 1 subunit (AP3M1), mRNA /cds=p(52,1308) /gb=XM_001928736 /gi=311271397 /ug=Ssc.37729 /len=3312"	GO:0000323//lytic vacuole;GO:0030119//AP-type membrane coat adaptor complex	GO:0005488//binding	GO:0006623//protein targeting to vacuole	gi|73953589|ref|XP_546170.2|/0/PREDICTED: similar to Adapter-related protein complex 3 mu 1 subunit (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) [Canis familiaris]
gnl|UG|Ssc#S58309474	944	271.78	368	105.19	967	290.61	"PREDICTED: Sus scrofa nuclear transport factor 2-like (LOC100520245), mRNA /cds=p(1,351) /gb=XM_003126922 /gi=311257135 /ug=Ssc.948 /len=2011"	GO:0005635//nuclear envelope;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0006605//protein targeting	gi|94402184|ref|XP_001003873.1|/2.28458e-52/PREDICTED: nuclear transport factor 2-like [Mus musculus]
gnl|UG|Ssc#S58315167	9	2.59	0	0	0	0	"PREDICTED: Sus scrofa histone chaperone ASF1A-like (LOC100519343), mRNA /cds=p(442,1056) /gb=XM_003121238 /gi=311244032 /ug=Ssc.56590 /len=1242"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0005515//protein binding	GO:0006259//DNA metabolic process;GO:0034728;GO:0031936//negative regulation of chromatin silencing	gi|311244033|ref|XP_003121286.1|/1.50671e-115/PREDICTED: histone chaperone ASF1A-like [Sus scrofa]
gnl|UG|Ssc#S40008179	0	0	0	0	0	0	"reep29c_b6.y1 eep Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW103088 /gi=181335103 /ug=Ssc.88019 /len=489"	GO:0031981//nuclear lumen;GO:0030427//site of polarized growth;GO:0005924//cell-substrate adherens junction;GO:0042995//cell projection;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0004672//protein kinase activity;GO:0046983//protein dimerization activity;GO:0032559	GO:0048731;GO:0030307//positive regulation of cell growth;GO:0007265//Ras protein signal transduction;GO:0051017//actin filament bundle assembly;GO:0006796//phosphate metabolic process;GO:0006935//chemotaxis;GO:0031397//negative regulation of protein ubiquitination	gi|296473062|gb|DAA15177.1|/3.96534e-90/LIM domain kinase 1 [Bos taurus]
gnl|UG|Ssc#S58300907	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa Rho GTPase activating protein 4 (ARHGAP4), mRNA /cds=p(1,2871) /gb=XM_003135484 /gi=311277192 /ug=Ssc.47275 /len=3184"	GO:0031981//nuclear lumen;GO:0030427//site of polarized growth;GO:0015630//microtubule cytoskeleton;GO:0005924//cell-substrate adherens junction;GO:0044444//cytoplasmic part	"GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0030674//protein binding, bridging;GO:0005099//Ras GTPase activator activity"	GO:0010761//fibroblast migration;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006996//organelle organization;GO:0006917//induction of apoptosis;GO:0030308//negative regulation of cell growth;GO:0032319//regulation of Rho GTPase activity	gi|311277193|ref|XP_003135532.1|/0/PREDICTED: rho GTPase-activating protein 4-like [Sus scrofa]
gnl|UG|Ssc#S35164569	4	1.15	0	0	2	0.6	"Sus scrofa mRNA, clone:MLN010023D02, expressed in mesenteric lymph node /gb=AK233772 /gi=115555157 /ug=Ssc.1067 /len=895"	GO:0043231//intracellular membrane-bounded organelle;GO:0000502//proteasome complex	GO:0004175//endopeptidase activity	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0010033//response to organic substance;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0009719;GO:0051704"	gi|4506195|ref|NP_002785.1|/2.13554e-96/proteasome subunit beta type-2 isoform 1 [Homo sapiens]
gnl|UG|Ssc#S55320225	5	1.44	0	0	0	0	"Sus scrofa mRNA, clone:THY010071B12, expressed in thymus /gb=AK351738 /gi=288784647 /ug=Ssc.83955 /len=2042"	-	-	-	-
gnl|UG|Ssc#S35170311	31	8.93	15	4.29	34	10.22	"Sus scrofa mRNA, clone:OVRM10092G01, expressed in ovary /gb=AK235550 /gi=115549528 /ug=Ssc.36043 /len=2010"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|73956434|ref|XP_853240.1|/1.26189e-107/PREDICTED: hypothetical protein XP_848147 [Canis familiaris]
gnl|UG|Ssc#S58313707	2	0.58	0	0	11	3.31	"PREDICTED: Sus scrofa oxysterol-binding protein 1-like (LOC100515007), mRNA /cds=p(1,2430) /gb=XM_003122686 /gi=311247632 /ug=Ssc.3813 /len=4562"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle	GO:0032934//sterol binding	GO:0051234//establishment of localization;GO:0010876	gi|311247633|ref|XP_003122734.1|/0/PREDICTED: oxysterol-binding protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55293427	2	0.58	2	0.57	0	0	"FS671715 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010007D07 5', mRNA sequence /clone=KDN010007D07 /clone_end=5' /gb=FS671715 /gi=288292201 /ug=Ssc.72134 /len=895"	GO:0031981//nuclear lumen	GO:0005515//protein binding	GO:0006915//apoptosis;GO:0002200;GO:0012502//induction of programmed cell death	gi|73991950|ref|XP_534415.2|/1.41087e-124/PREDICTED: similar to beta catenin-like 1 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S35170281	28	8.06	25	7.15	17	5.11	"Sus scrofa mRNA, clone:TCH010092D02, expressed in trachea /gb=AK238366 /gi=115549558 /ug=Ssc.70048 /len=1824"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0016411//acylglycerol O-acyltransferase activity	GO:0006644//phospholipid metabolic process;GO:0009893//positive regulation of metabolic process;GO:0006641//triglyceride metabolic process;GO:0046394;GO:0001959//regulation of cytokine-mediated signaling pathway;GO:0015980//energy derivation by oxidation of organic compounds;GO:0001816//cytokine production	gi|147225142|emb|CAN13270.1|/5.69479e-144/1-acylglycerol-3-phosphate O-acyltransferase 1 (acetoacetly Coenzyme A thiolase) [Sus scrofa]
gnl|UG|Ssc#S55322203	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:DCI010106A04, expressed in dendritic cells (immature) /gb=AK344680 /gi=288782669 /ug=Ssc.3571 /len=2290"	-	-	-	gi|109096285|ref|XP_001097194.1|/0/PREDICTED: RNA polymerase II-associated protein 3 isoform 1 [Macaca mulatta]
gnl|UG|Ssc#S55323702	166	47.79	39	11.15	111	33.36	"Sus scrofa mRNA, clone:SPL010031D02, expressed in spleen /gb=AK350309 /gi=288781170 /ug=Ssc.7954 /len=2323"	GO:0031981//nuclear lumen;GO:0032155;GO:0043232;GO:0031252//cell leading edge;GO:0005911//cell-cell junction;GO:0005902//microvillus	GO:0008092//cytoskeletal protein binding	GO:0008105//asymmetric protein localization;GO:0051693//actin filament capping;GO:0010033//response to organic substance;GO:0030031//cell projection assembly	gi|291383924|ref|XP_002708517.1|/0/PREDICTED: radixin-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S35166551	0	0	7	2	5	1.5	"Sus scrofa mRNA, clone:LVRM10062H10, expressed in liver /gb=AK232985 /gi=115553187 /ug=Ssc.48264 /len=2339"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0006935//chemotaxis;GO:0048513//organ development;GO:0009612//response to mechanical stimulus"	gi|149705997|ref|XP_001495375.1|/0/PREDICTED: similar to Ets variant gene 1 [Equus caballus]
gnl|UG|Ssc#S58311337	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa germ cell-less protein-like 1-like (LOC100511872), mRNA /cds=p(227,1807) /gb=XM_003125059 /gi=311252468 /ug=Ssc.6482 /len=2219"	GO:0034399//nuclear periphery;GO:0012505//endomembrane system	GO:0005488//binding	"GO:0048869;GO:0048232//male gamete generation;GO:0006351//transcription, DNA-dependent"	gi|311252469|ref|XP_003125107.1|/0/PREDICTED: germ cell-less protein-like 1-like [Sus scrofa]
gnl|UG|Ssc#S35167671	11	3.17	7	2	6	1.8	"Sus scrofa mRNA, clone:THY010087B12, expressed in thymus /gb=AK239261 /gi=115552068 /ug=Ssc.54481 /len=1200"	-	-	-	gi|301786132|ref|XP_002928481.1|/1.80913e-25/PREDICTED: nuclear ubiquitous casein and cyclin-dependent kinases substrate-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58304355	11	3.17	4	1.14	2	0.6	"PREDICTED: Sus scrofa COP9 signalosome complex subunit 3-like (LOC100512312), mRNA /cds=p(680,1951) /gb=XM_003132043 /gi=311268511 /ug=Ssc.11099 /len=2780"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0043009//chordate embryonic development;GO:0009314//response to radiation;GO:0023052//signaling	gi|311268512|ref|XP_003132091.1|/0/PREDICTED: COP9 signalosome complex subunit 3-like [Sus scrofa]
gnl|UG|Ssc#S49954374	5	1.44	2	0.57	0	0	"Sus scrofa mitogen-activated protein kinase-activated protein kinase 5 (MAPKAPK5) mRNA, complete cds /cds=p(132,1547) /gb=FJ438464 /gi=217874339 /ug=Ssc.1994 /len=1847"	GO:0031981//nuclear lumen	GO:0004712//protein serine/threonine/tyrosine kinase activity;GO:0032559	GO:0006464//protein modification process;GO:0023052//signaling	gi|73995216|ref|XP_534678.2|/0/PREDICTED: similar to mitogen-activated protein kinase-activated protein kinase 5 isoform 2 [Canis familiaris]
gnl|UG|Ssc#S58307592	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa transmembrane protein 129-like (LOC100513413), mRNA /cds=p(1,1089) /gb=XM_003128802 /gi=311261769 /ug=Ssc.5288 /len=2316"	GO:0031224//intrinsic to membrane	-	-	gi|311261770|ref|XP_003128850.1|/0/PREDICTED: transmembrane protein 129-like [Sus scrofa]
gnl|UG|Ssc#S35169553	2	0.58	2	0.57	4	1.2	"Sus scrofa mRNA, clone:OVRM10113C04, expressed in ovary /gb=AK235765 /gi=115550286 /ug=Ssc.7654 /len=2523"	GO:0043073//germ cell nucleus;GO:0000794//condensed nuclear chromosome	GO:0005515//protein binding;GO:0032559;GO:0008289//lipid binding	GO:0007127//meiosis I;GO:0070193//synaptonemal complex organization;GO:0031660//regulation of cyclin-dependent protein kinase activity involved in G2/M;GO:0007281//germ cell development;GO:0048232//male gamete generation;GO:0006950//response to stress	gi|301756697|ref|XP_002914202.1|/0/PREDICTED: heat shock-related 70 kDa protein 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58309282	165	47.5	257	73.46	131	39.37	"PREDICTED: Sus scrofa hypothetical protein LOC100517098 (LOC100517098), mRNA /cds=p(1,3168) /gb=XM_003127119 /gi=311257524 /ug=Ssc.20117 /len=3206"	GO:0016021//integral to membrane;GO:0033017//sarcoplasmic reticulum membrane;GO:0030017//sarcomere	GO:0005218//intracellular ligand-gated calcium channel activity;GO:0005515//protein binding	GO:0003012//muscle system process;GO:0051283;GO:0014074//response to purine-containing compound;GO:0006816//calcium ion transport;GO:0006950//response to stress	gi|311257525|ref|XP_003127167.1|/0/PREDICTED: hypothetical protein LOC100517098 [Sus scrofa]
gnl|UG|Ssc#S35173062	57	16.41	75	21.44	46	13.82	"Sus scrofa mRNA, clone:SPL010069F10, expressed in spleen /gb=AK237619 /gi=115546773 /ug=Ssc.24782 /len=1766"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding	GO:0031016//pancreas development;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0016055//Wnt receptor signaling pathway;GO:0031647//regulation of protein stability;GO:0008283//cell proliferation;GO:0019827//stem cell maintenance;GO:0002320//lymphoid progenitor cell differentiation;GO:0006915//apoptosis;GO:0006950//response to stress;GO:0030098//lymphocyte differentiation	gi|297677251|ref|XP_002816518.1|/3.16899e-67/PREDICTED: transcription factor SOX-4-like [Pongo abelii]
gnl|UG|Ssc#S58310628	6	1.73	0	0	0	0	"PREDICTED: Sus scrofa phosphatidylinositol 4-kinase beta-like (LOC100514047), mRNA /cds=p(1,2871) /gb=XM_003125798 /gi=311254333 /ug=Ssc.12306 /len=3562"	GO:0031966//mitochondrial membrane;GO:0005789//endoplasmic reticulum membrane	GO:0001727//lipid kinase activity;GO:0032559	GO:0046488//phosphatidylinositol metabolic process;GO:0046474//glycerophospholipid biosynthetic process;GO:0006796//phosphate metabolic process;GO:0048017//inositol lipid-mediated signaling;GO:0006897//endocytosis	gi|311254334|ref|XP_003125846.1|/0/PREDICTED: phosphatidylinositol 4-kinase beta-like [Sus scrofa]
gnl|UG|Ssc#S55323183	8	2.3	4	1.14	0	0	"Sus scrofa mRNA, clone:SPL010093C05, expressed in spleen /gb=AK350559 /gi=288781689 /ug=Ssc.5196 /len=2327"	GO:0005667//transcription factor complex	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding	GO:0006383//transcription from RNA polymerase III promoter	gi|301755950|ref|XP_002913813.1|/0/PREDICTED: general transcription factor 3C polypeptide 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35165317	463	133.3	285	81.47	410	123.22	"Sus scrofa mRNA, clone:LVRM10144H02, expressed in liver /gb=AK233419 /gi=115554409 /ug=Ssc.5284 /len=1399"	GO:0016021//integral to membrane;GO:0031966//mitochondrial membrane;GO:0019866//organelle inner membrane	GO:0005515//protein binding;GO:0005345//purine base transmembrane transporter activity;GO:0015300//solute:solute antiporter activity	GO:0015980//energy derivation by oxidation of organic compounds;GO:0010939;GO:0006915//apoptosis;GO:0030073//insulin secretion;GO:0007005//mitochondrion organization;GO:0051704;GO:0015868//purine ribonucleotide transport;GO:0051933;GO:0006863//purine base transport	gi|311272309|ref|XP_003133393.1|/8.67509e-163/PREDICTED: ADP/ATP translocase 1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58312732	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa fibroblast growth factor receptor 4, transcript variant 1 (FGFR4), mRNA /cds=p(1,2403) /gb=XM_003123682 /gi=311249606 /ug=Ssc.60202 /len=2820"	GO:0016021//integral to membrane	GO:0019838//growth factor binding;GO:0004714//transmembrane receptor protein tyrosine kinase activity;GO:0032559	GO:0003156//regulation of organ formation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0008283//cell proliferation;GO:0060428//lung epithelium development;GO:0006464//protein modification process	gi|311249607|ref|XP_003123730.1|/0/PREDICTED: fibroblast growth factor receptor 4 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S40233894	32	9.21	24	6.86	27	8.11	"rpliv0114_n3.y1 liv Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW328801 /gi=182868905 /ug=Ssc.89865 /len=595"	GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0007166//cell surface receptor linked signaling pathway	gi|84370089|ref|NP_001033621.1|/8.5441e-94/T-cell immunomodulatory protein [Bos taurus]
gnl|UG|Ssc#S46877398	0	0	4	1.14	6	1.8	"PREDICTED: Sus scrofa BCL2/adenovirus E1B 19kDa interacting protein 3-like (BNIP3L), mRNA /cds=p(92,748) /gb=XM_001927592 /gi=194041520 /ug=Ssc.7152 /len=3469"	GO:0031224//intrinsic to membrane;GO:0031966//mitochondrial membrane;GO:0012505//endomembrane system	GO:0042802//identical protein binding;GO:0046983//protein dimerization activity	GO:0012502//induction of programmed cell death;GO:0006915//apoptosis;GO:0051704;GO:0010629//negative regulation of gene expression;GO:0007005//mitochondrion organization;GO:0002252	gi|194041521|ref|XP_001927627.1|/1.93702e-93/PREDICTED: BCL2/adenovirus E1B 19kDa interacting protein 3-like [Sus scrofa]
gnl|UG|Ssc#S35166151	53	15.26	82	23.44	57	17.13	"Sus scrofa mRNA, clone:THY010203G07, expressed in thymus /gb=AK239774 /gi=115553587 /ug=Ssc.1887 /len=1236"	GO:0031981//nuclear lumen	-	GO:0012501//programmed cell death	gi|301783955|ref|XP_002927406.1|/1.40824e-81/PREDICTED: protein yippee-like 3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46877741	0	0	0	0	8	2.4	"PREDICTED: Sus scrofa thyroid hormone receptor beta 1 (c-erbA-beta 1) (C-ERBA-B1), mRNA /cds=p(1,1404) /gb=XM_001928465 /gi=311268588 /ug=Ssc.16030 /len=1404"	-	-	-	-
gnl|UG|Ssc#S58309625	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa myotubularin-related protein 5-like (LOC100518017), mRNA /cds=p(1,7026) /gb=XM_003126772 /gi=311256817 /ug=Ssc.28702 /len=7101"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0004721//phosphoprotein phosphatase activity;GO:0019212//phosphatase inhibitor activity	GO:0006464//protein modification process;GO:0016049//cell growth;GO:0048232//male gamete generation;GO:0006796//phosphate metabolic process	gi|311256818|ref|XP_003126820.1|/0/PREDICTED: myotubularin-related protein 5-like [Sus scrofa]
gnl|UG|Ssc#S26726315	0	0	4	1.14	0	0	"AJ962399 KN404_2 Sus scrofa cDNA clone C0007758p13 3', mRNA sequence /clone=C0007758p13 /clone_end=3' /gb=AJ962399 /gi=74379215 /ug=Ssc.87769 /len=575"	-	-	-	-
gnl|UG|Ssc#S55322694	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:DCI010032B08, expressed in dendritic cells (immature) /gb=AK344389 /gi=288782178 /ug=Ssc.21516 /len=2775"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0006396//RNA processing	gi|296488280|gb|DAA30393.1|/0/RNA binding motif protein 28 isoform 1 [Bos taurus]
gnl|UG|Ssc#S58311489	133	38.29	92	26.3	114	34.26	"PREDICTED: Sus scrofa transmembrane protein 131-like (LOC100511075), mRNA /cds=p(1,5565) /gb=XM_003124918 /gi=311252159 /ug=Ssc.13862 /len=6333"	GO:0044464//cell part	-	-	gi|311252160|ref|XP_003124966.1|/0/PREDICTED: LOW QUALITY PROTEIN: transmembrane protein 131-like [Sus scrofa]
gnl|UG|Ssc#S46877707	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa protein tyrosine phosphatase, non-receptor type 23 (PTP23), mRNA /cds=p(1,4791) /gb=XM_001924240 /gi=311268821 /ug=Ssc.44151 /len=5016"	GO:0005815//microtubule organizing center	GO:0016787//hydrolase activity	GO:0048858//cell projection morphogenesis	gi|311268822|ref|XP_001924275.2|/0/PREDICTED: tyrosine-protein phosphatase non-receptor type 23 [Sus scrofa]
gnl|UG|Ssc#S55321221	130	37.43	166	47.45	112	33.66	"Sus scrofa mRNA, clone:ITT010094B12, expressed in small intestine /gb=AK345266 /gi=288783651 /ug=Ssc.7468 /len=1834"	GO:0044459//plasma membrane part;GO:0005667//transcription factor complex	GO:0008047//enzyme activator activity;GO:0003712//transcription cofactor activity;GO:0005515//protein binding;GO:0003702//RNA polymerase II transcription factor activity	"GO:0051707//response to other organism;GO:0000377;GO:0006352//transcription initiation, DNA-dependent;GO:0006397//mRNA processing;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|311248474|ref|XP_003123159.1|/2.83048e-167/PREDICTED: general transcription factor IIF subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S58305646	3	0.86	7	2	0	0	"PREDICTED: Sus scrofa amyloid beta A4 precursor protein-binding family B member 1-interacting protein-like (LOC100514179), mRNA /cds=p(117,2084) /gb=XM_003130751 /gi=311265740 /ug=Ssc.25086 /len=2516"	GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	-	GO:0007599//hemostasis	gi|311265741|ref|XP_003130799.1|/0/PREDICTED: amyloid beta A4 precursor protein-binding family B member 1-interacting protein-like [Sus scrofa]
gnl|UG|Ssc#S58305583	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa enoyl-CoA hydratase domain-containing protein 3, mitochondrial-like (LOC100513945), mRNA /cds=p(1,1320) /gb=XM_003130816 /gi=311265867 /ug=Ssc.33207 /len=1320"	GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|311265868|ref|XP_003130864.1|/0/PREDICTED: enoyl-CoA hydratase domain-containing protein 3, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S23213283	77	22.17	173	49.45	112	33.66	"Sus scrofa clone Clu_27837.scr.msk.p1.Contig2, mRNA sequence /gb=AY609725 /gi=52351293 /ug=Ssc.8537 /len=2311"	-	GO:0019787//small conjugating protein ligase activity;GO:0032559	GO:0032446//protein modification by small protein conjugation	gi|31543906|ref|NP_060052.3|/0/ubiquitin-conjugating enzyme E2 Q1 [Homo sapiens]
gnl|UG|Ssc#S26725238	6	1.73	5	1.43	9	2.7	"AJ961322 KN404_2 Sus scrofa cDNA clone C0007758p15 3', mRNA sequence /clone=C0007758p15 /clone_end=3' /gb=AJ961322 /gi=74378138 /ug=Ssc.35628 /len=848"	-	-	-	-
gnl|UG|Ssc#S35169130	12	3.45	5	1.43	10	3.01	"Sus scrofa mRNA, clone:OVRM10115B07, expressed in ovary /gb=AK235783 /gi=115550709 /ug=Ssc.3321 /len=3437"	-	-	-	-
gnl|UG|Ssc#S58310195	3	0.86	0	0	3	0.9	"PREDICTED: Sus scrofa gametocyte-specific factor 1-like (LOC100521495), mRNA /cds=p(84,587) /gb=XM_003126205 /gi=311255494 /ug=Ssc.33579 /len=925"	GO:0044424//intracellular part	GO:0043169//cation binding	-	gi|311255495|ref|XP_003126253.1|/4.33756e-100/PREDICTED: gametocyte-specific factor 1-like [Sus scrofa]
gnl|UG|Ssc#S58311600	0	0	10	2.86	10	3.01	"PREDICTED: Sus scrofa zinc finger CCCH-type containing 6 (ZC3H6), mRNA /cds=p(1,2874) /gb=XM_003124806 /gi=311251936 /ug=Ssc.93762 /len=3871"	-	GO:0046872//metal ion binding	-	gi|311251937|ref|XP_003124854.1|/0/PREDICTED: zinc finger CCCH domain-containing protein 6-like [Sus scrofa]
gnl|UG|Ssc#S58301956	9	2.59	0	0	0	0	"PREDICTED: Sus scrofa transcription factor MafB-like (LOC100518227), mRNA /cds=p(1,900) /gb=XM_003134440 /gi=311274865 /ug=Ssc.10965 /len=2903"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0003677//DNA binding;GO:0005515//protein binding	GO:0003002//regionalization;GO:0042471//ear morphogenesis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0045638//negative regulation of myeloid cell differentiation;GO:0021546	gi|311274866|ref|XP_003134488.1|/2.45122e-102/PREDICTED: transcription factor MafB-like [Sus scrofa]
gnl|UG|Ssc#S58314657	0	0	0	0	0	0	"PREDICTED: Sus scrofa IQ domain-containing protein H-like (LOC100518464), mRNA /cds=p(1,858) /gb=XM_003121746 /gi=311245345 /ug=Ssc.84136 /len=1319"	-	-	-	gi|311245346|ref|XP_003121794.1|/1.28767e-144/PREDICTED: IQ domain-containing protein H-like [Sus scrofa]
gnl|UG|Ssc#S58314538	7	2.02	7	2	2	0.6	"PREDICTED: Sus scrofa nesprin-2-like (LOC100524661), mRNA /cds=p(1,20682) /gb=XM_003121864 /gi=311245654 /ug=Ssc.4004 /len=21488"	GO:0030175//filopodium;GO:0031224//intrinsic to membrane;GO:0031965//nuclear membrane;GO:0031981//nuclear lumen;GO:0031674//I band;GO:0005924//cell-substrate adherens junction;GO:0034992//microtubule organizing center attachment site;GO:0030027//lamellipodium;GO:0005789//endoplasmic reticulum membrane	GO:0008092//cytoskeletal protein binding	GO:0016477//cell migration;GO:0007097//nuclear migration;GO:0007010//cytoskeleton organization	gi|311245655|ref|XP_003121912.1|/0/PREDICTED: nesprin-2-like [Sus scrofa]
gnl|UG|Ssc#S34508731	2	0.58	0	0	2	0.6	"DB817379 full-length enriched swine cDNA library, adult trachea Sus scrofa cDNA 3', mRNA sequence /clone=TCH010014H10 /clone_end=3' /gb=DB817379 /gi=112764044 /ug=Ssc.11571 /len=856"	-	-	-	gi|73954515|ref|XP_857807.1|/6.0075e-53/PREDICTED: hypothetical protein XP_852714 isoform 3 [Canis familiaris]
gnl|UG|Ssc#S35168171	123	35.41	100	28.58	119	35.76	"Sus scrofa mRNA, clone:THY010053D12, expressed in thymus /gb=AK238983 /gi=115551519 /ug=Ssc.25056 /len=2854"	GO:0005681//spliceosomal complex;GO:0016604//nuclear body	GO:0003676//nucleic acid binding;GO:0005515//protein binding	"GO:0000377;GO:0006351//transcription, DNA-dependent"	gi|73973038|ref|XP_532156.2|/0/PREDICTED: similar to CDC5-like [Canis familiaris]
gnl|UG|Ssc#S46875754	11	3.17	16	4.57	20	6.01	"PREDICTED: Sus scrofa WD repeat-containing protein 44-like, transcript variant 1 (LOC100153754), mRNA /cds=p(266,3004) /gb=XM_001927734 /gi=311276892 /ug=Ssc.16873 /len=4192"	-	-	-	-
gnl|UG|Ssc#S46879837	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa leucine-rich repeats and immunoglobulin-like domains 2 (LRIG2), partial mRNA /cds=p(1,2971) /gb=XM_001928165 /gi=311254565 /ug=Ssc.52703 /len=2971"	GO:0044424//intracellular part;GO:0031224//intrinsic to membrane	-	-	"gi|311254566|ref|XP_001928200.2|/0/PREDICTED: leucine-rich repeats and immunoglobulin-like domains 2, partial [Sus scrofa]"
gnl|UG|Ssc#S55327410	5	1.44	0	0	10	3.01	"Sus scrofa mRNA, clone:MLTL10078G03, expressed in longissimus /gb=AK347239 /gi=288576644 /ug=Ssc.7708 /len=1539"	GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0016783//sulfurtransferase activity;GO:0051536//iron-sulfur cluster binding	GO:0006952//defense response;GO:0014020;GO:0006633//fatty acid biosynthetic process;GO:0002237//response to molecule of bacterial origin	"gi|62988298|ref|NP_001017944.1|/0/lipoyl synthase, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S58307227	22	6.33	12	3.43	15	4.51	"PREDICTED: Sus scrofa ATP-binding cassette sub-family E member 1-like (LOC100524881), mRNA /cds=p(157,1488) /gb=XM_003129170 /gi=311262508 /ug=Ssc.7134 /len=3088"	GO:0043231//intracellular membrane-bounded organelle	GO:0017111//nucleoside-triphosphatase activity;GO:0004857//enzyme inhibitor activity;GO:0000166//nucleotide binding	GO:0051707//response to other organism;GO:0044248//cellular catabolic process;GO:0016070//RNA metabolic process	gi|311262509|ref|XP_003129218.1|/0/PREDICTED: ATP-binding cassette sub-family E member 1-like [Sus scrofa]
gnl|UG|Ssc#S58305147	0	0	0	0	0	0	"PREDICTED: Sus scrofa zinc transporter ZIP11-like (LOC100518214), mRNA /cds=p(116,1120) /gb=XM_003131247 /gi=311266883 /ug=Ssc.7051 /len=2711"	GO:0031224//intrinsic to membrane	GO:0008324//cation transmembrane transporter activity	GO:0000041//transition metal ion transport	gi|311266884|ref|XP_003131295.1|/1.48576e-170/PREDICTED: zinc transporter ZIP11-like [Sus scrofa]
gnl|UG|Ssc#S58308682	13	3.74	11	3.14	2	0.6	"PREDICTED: Sus scrofa AT rich interactive domain 1A (SWI-like) (ARID1A), mRNA /cds=p(1,4263) /gb=XM_003127733 /gi=311258751 /ug=Ssc.53804 /len=4263"	GO:0031981//nuclear lumen;GO:0070603//SWI/SNF-type complex	GO:0005488//binding	-	gi|311258752|ref|XP_003127781.1|/0/PREDICTED: AT-rich interactive domain-containing protein 1A-like [Sus scrofa]
gnl|UG|Ssc#S35166536	140	40.31	212	60.6	128	38.47	"Sus scrofa mRNA, clone:LVRM10065H01, expressed in liver /gb=AK233000 /gi=115553202 /ug=Ssc.3123 /len=1657"	-	-	-	-
gnl|UG|Ssc#S46876933	35	10.08	37	10.58	32	9.62	"PREDICTED: Sus scrofa tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 (TNKS2), mRNA /cds=p(1,3501) /gb=XM_001926556 /gi=311271624 /ug=Ssc.41178 /len=3501"	"GO:0043231//intracellular membrane-bounded organelle;GO:0000781//chromosome, telomeric region;GO:0005813//centrosome;GO:0012505//endomembrane system;GO:0042598//vesicular fraction"	"GO:0016763//transferase activity, transferring pentosyl groups"	GO:0034502//protein localization to chromosome;GO:0007004//telomere maintenance via telomerase;GO:0006464//protein modification process	gi|194042480|ref|XP_001926591.1|/0/PREDICTED: tankyrase-2 [Sus scrofa]
gnl|UG|Ssc#S58301493	5	1.44	0	0	11	3.31	"PREDICTED: Sus scrofa TTD non-photosensitive 1 protein-like (LOC100518707), mRNA /cds=p(339,878) /gb=XM_003134903 /gi=311275867 /ug=Ssc.6621 /len=1385"	GO:0005856//cytoskeleton	-	GO:0007049//cell cycle	gi|311275868|ref|XP_003134951.1|/8.52968e-54/PREDICTED: TTD non-photosensitive 1 protein-like [Sus scrofa]
gnl|UG|Ssc#S18384662	0	0	3	0.86	0	0	"935836 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK464791 /gi=40836072 /ug=Ssc.43893 /len=868"	-	-	-	-
gnl|UG|Ssc#S35171908	47	13.53	23	6.57	19	5.71	"Sus scrofa mRNA, clone:OVRM10028G03, expressed in ovary /gb=AK234904 /gi=115547927 /ug=Ssc.19209 /len=2398"	-	-	-	gi|311249599|ref|XP_003123726.1|/2.29686e-18/PREDICTED: ras-related protein Rab-24-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35174175	111	31.96	31	8.86	102	30.65	"Sus scrofa mRNA, clone:AMP010040D07, expressed in alveolar macrophage /gb=AK230775 /gi=115545660 /ug=Ssc.23800 /len=1815"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0016301//kinase activity;GO:0032559	GO:0006796//phosphate metabolic process;GO:0006007//glucose catabolic process	gi|153792027|ref|NP_001093402.1|/0/phosphoglycerate kinase 1 [Sus scrofa]
gnl|UG|Ssc#S46875722	3	0.86	0	0	15	4.51	"PREDICTED: Sus scrofa rCG36369 (LOC100155023), mRNA /cds=p(103,591) /gb=XM_001928070 /gi=194044991 /ug=Ssc.2628 /len=2776"	GO:0044464//cell part	GO:0005543//phospholipid binding	GO:0009987//cellular process;GO:0006810//transport	"gi|149042205|gb|EDL95912.1|/1.09399e-92/rCG36369, isoform CRA_c [Rattus norvegicus]"
gnl|UG|Ssc#S58304912	3	0.86	4	1.14	0	0	"PREDICTED: Sus scrofa male-specific lethal 1 homolog (Drosophila) (MSL1), mRNA /cds=p(1,1845) /gb=XM_003131486 /gi=311267363 /ug=Ssc.5128 /len=1845"	GO:0000123//histone acetyltransferase complex	-	GO:0043967//histone H4 acetylation	gi|311267364|ref|XP_003131534.1|/0/PREDICTED: male-specific lethal 1 homolog [Sus scrofa]
gnl|UG|Ssc#S20935923	2	0.58	6	1.72	0	0	"AJ647646 CSEQRAN19 Sus scrofa cDNA clone C0003260_E04, mRNA sequence /clone=C0003260_E04 /gb=AJ647646 /gi=49324491 /ug=Ssc.74079 /len=575"	GO:0031091//platelet alpha granule;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity	GO:0006952//defense response;GO:0006956//complement activation;GO:0001775//cell activation;GO:0006887//exocytosis;GO:0007599//hemostasis;GO:0007166//cell surface receptor linked signaling pathway	gi|117647198|ref|NP_001071110.1|/5.74393e-96/complement factor D precursor [Rattus norvegicus]
gnl|UG|Ssc#S58308718	24	6.91	10	2.86	19	5.71	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 4 gamma, 3 (EIF4G3), mRNA /cds=p(127,4662) /gb=XM_003127681 /gi=311258674 /ug=Ssc.8028 /len=5525"	GO:0043234//protein complex	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006413//translational initiation;GO:0001932//regulation of protein phosphorylation;GO:0051704;GO:0007127//meiosis I;GO:0048232//male gamete generation	gi|311258675|ref|XP_003127729.1|/0/PREDICTED: eukaryotic translation initiation factor 4 gamma 3-like [Sus scrofa]
gnl|UG|Ssc#S58308648	5	1.44	0	0	4	1.2	"PREDICTED: Sus scrofa sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1-like (LOC100516496), mRNA /cds=p(1,783) /gb=XM_003127748 /gi=311258819 /ug=Ssc.28637 /len=1796"	GO:0031224//intrinsic to membrane	-	-	gi|311258820|ref|XP_003127796.1|/1.16479e-141/PREDICTED: sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58307954	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa fibrocystin-like (LOC100517169), mRNA /cds=p(1,11943) /gb=XM_003128442 /gi=311260581 /ug=Ssc.77645 /len=11943"	GO:0005815//microtubule organizing center;GO:0046658//anchored to plasma membrane	GO:0005488//binding;GO:0004871//signal transducer activity	GO:0065008;GO:0048523//negative regulation of cellular process;GO:0010927;GO:0007155//cell adhesion;GO:0048513//organ development	gi|311260582|ref|XP_003128490.1|/0/PREDICTED: LOW QUALITY PROTEIN: fibrocystin-like [Sus scrofa]
gnl|UG|Ssc#S46879791	65	18.71	32	9.15	36	10.82	"PREDICTED: Sus scrofa seryl-tRNA synthetase (SARS), mRNA /cds=p(118,1662) /gb=XM_001925670 /gi=311254664 /ug=Ssc.9404 /len=1890"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0003676//nucleic acid binding;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|194036543|ref|XP_001925705.1|/0/PREDICTED: seryl-tRNA synthetase, cytoplasmic [Sus scrofa]"
gnl|UG|Ssc#S55325877	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:PBL010023E10, expressed in peripheral blood mononuclear cells /gb=AK348774 /gi=288778949 /ug=Ssc.2198 /len=1102"	-	-	-	-
gnl|UG|Ssc#S46879391	6	1.73	6	1.72	8	2.4	"PREDICTED: Sus scrofa zinc finger protein 385A, transcript variant 1 (ZNF385A), mRNA /cds=p(1,1335) /gb=XM_001927708 /gi=311255490 /ug=Ssc.33914 /len=1335"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311255491|ref|XP_001927743.2|/0/PREDICTED: zinc finger protein 385A isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58303068	5	1.44	0	0	13	3.91	"PREDICTED: Sus scrofa vascular endothelial growth factor C-like (LOC100525960), mRNA /cds=p(1,1227) /gb=XM_003133319 /gi=311272271 /ug=Ssc.82173 /len=1610"	GO:0031091//platelet alpha granule;GO:0044421//extracellular region part	GO:0005172//vascular endothelial growth factor receptor binding	GO:0001934//positive regulation of protein phosphorylation;GO:0007599//hemostasis;GO:0050927//positive regulation of positive chemotaxis;GO:0002690//positive regulation of leukocyte chemotaxis;GO:0007405//neuroblast proliferation;GO:0006887//exocytosis;GO:0022603//regulation of anatomical structure morphogenesis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0008284//positive regulation of cell proliferation;GO:0002009//morphogenesis of an epithelium;GO:0009966//regulation of signal transduction;GO:0010595//positive regulation of endothelial cell migration;GO:0001775//cell activation;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0008217//regulation of blood pressure	gi|311272272|ref|XP_003133367.1|/0/PREDICTED: vascular endothelial growth factor C-like [Sus scrofa]
gnl|UG|Ssc#S58306506	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa beta-secretase 1-like, transcript variant 1 (LOC100511707), mRNA /cds=p(417,1937) /gb=XM_003129898 /gi=311263977 /ug=Ssc.49081 /len=2569"	GO:0044431//Golgi apparatus part;GO:0043005//neuron projection;GO:0012506//vesicle membrane;GO:0016021//integral to membrane;GO:0005626//insoluble fraction	GO:0004175//endopeptidase activity;GO:0005488//binding;GO:0008242//omega peptidase activity	GO:0009100//glycoprotein metabolic process;GO:0033619//membrane protein proteolysis	gi|311263978|ref|XP_003129946.1|/0/PREDICTED: beta-secretase 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35335965	11	3.17	0	0	0	0	"SusFleck_BF_0053_0056_5_pCNS_O09 SusFleck Backfat Sus scrofa cDNA clone 0053_0056_O09 5', mRNA sequence /clone=0053_0056_O09 /clone_end=5' /gb=DT334362 /gi=116347025 /ug=Ssc.90099 /len=743"	-	GO:0046914//transition metal ion binding	-	gi|301782645|ref|XP_002926740.1|/1.78805e-137/PREDICTED: PHD finger protein 14-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58302295	5	1.44	8	2.29	3	0.9	"PREDICTED: Sus scrofa ubiquitin-like domain-containing CTD phosphatase 1-like (LOC100519748), mRNA /cds=p(121,1077) /gb=XM_003134100 /gi=311274016 /ug=Ssc.38179 /len=2280"	GO:0043231//intracellular membrane-bounded organelle	GO:0016791//phosphatase activity	GO:0006796//phosphate metabolic process	gi|114050863|ref|NP_001039459.1|/4.49391e-165/ubiquitin-like domain-containing CTD phosphatase 1 [Bos taurus]
gnl|UG|Ssc#S58313190	4	1.15	2	0.57	3	0.9	"PREDICTED: Sus scrofa interleukin enhancer binding factor 3, 90kDa (ILF3), mRNA /cds=p(293,2863) /gb=XM_003123242 /gi=311248673 /ug=Ssc.8851 /len=2863"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003723//RNA binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0022403"	gi|311248674|ref|XP_003123290.1|/0/PREDICTED: interleukin enhancer-binding factor 3-like [Sus scrofa]
gnl|UG|Ssc#S58310320	0	0	2	0.57	3	0.9	"PREDICTED: Sus scrofa cryptochrome 1 (photolyase-like) (CRY1), mRNA /cds=p(81,1847) /gb=XM_003126079 /gi=311255200 /ug=Ssc.2033 /len=2484"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0016830//carbon-carbon lyase activity;GO:0004930//G-protein coupled receptor activity	"GO:0009583//detection of light stimulus;GO:0006259//DNA metabolic process;GO:0048511//rhythmic process;GO:0023052//signaling;GO:0006351//transcription, DNA-dependent;GO:0006464//protein modification process"	gi|311255201|ref|XP_003126127.1|/0/PREDICTED: cryptochrome-1-like [Sus scrofa]
gnl|UG|Ssc#S58310838	0	0	0	0	0	0	"PREDICTED: Sus scrofa protein virilizer homolog (LOC100512408), mRNA /cds=p(1,5403) /gb=XM_003125562 /gi=311253610 /ug=Ssc.24458 /len=6290"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0006396//RNA processing	gi|311253611|ref|XP_003125610.1|/0/PREDICTED: protein virilizer homolog [Sus scrofa]
gnl|UG|Ssc#S35166493	21	6.05	10	2.86	16	4.81	"Sus scrofa mRNA, clone:LVRM10072G08, expressed in liver /gb=AK233043 /gi=115553245 /ug=Ssc.52307 /len=1586"	GO:0005626//insoluble fraction;GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part	GO:0008144//drug binding;GO:0016859//cis-trans isomerase activity	GO:0044267//cellular protein metabolic process;GO:0006915//apoptosis;GO:0007006//mitochondrial membrane organization	"gi|194042185|ref|XP_001929518.1|/2.94239e-85/PREDICTED: peptidyl-prolyl cis-trans isomerase F, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S35170800	61	17.56	87	24.87	81	24.34	"Sus scrofa mRNA, clone:TCH010065C11, expressed in trachea /gb=AK238228 /gi=115549039 /ug=Ssc.54392 /len=1465"	GO:0031981//nuclear lumen;GO:0015629//actin cytoskeleton;GO:0005635//nuclear envelope;GO:0048770	GO:0008092//cytoskeletal protein binding	GO:0030030//cell projection organization;GO:0051693//actin filament capping	gi|311252243|ref|XP_003124996.1|/0/PREDICTED: macrophage-capping protein-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S46878984	14	4.03	11	3.14	34	10.22	"PREDICTED: Sus scrofa zinc finger CCCH-type containing 14 (ZC3H14), mRNA /cds=p(160,2352) /gb=XM_001926546 /gi=311261427 /ug=Ssc.93926 /len=3089"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311261428|ref|XP_001926581.2|/0/PREDICTED: zinc finger CCCH domain-containing protein 14 [Sus scrofa]
gnl|UG|Ssc#S40087050	0	0	0	0	3	0.9	"rfcc21b_m8.y1 fcc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW181957 /gi=182484858 /ug=Ssc.67725 /len=639"	-	-	-	-
gnl|UG|Ssc#S55319325	0	0	4	1.14	2	0.6	"Sus scrofa mRNA, clone:LVRM10154G06, expressed in liver /gb=AK346367 /gi=288785559 /ug=Ssc.10922 /len=2940"	GO:0043231//intracellular membrane-bounded organelle	GO:0016462//pyrophosphatase activity;GO:0032559	GO:0048232//male gamete generation;GO:0048869	gi|295444927|ref|NP_001171384.1|/0/spermatogenesis-associated protein 5 [Sus scrofa]
gnl|UG|Ssc#S58313291	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa far upstream element-binding protein 2-like (LOC100516780), mRNA /cds=p(1,2244) /gb=XM_003123110 /gi=311248471 /ug=Ssc.23979 /len=3035"	GO:0043005//neuron projection;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0044297//cell body	GO:0003729//mRNA binding	GO:0006403//RNA localization;GO:0008380//RNA splicing	gi|311248472|ref|XP_003123158.1|/0/PREDICTED: far upstream element-binding protein 2-like [Sus scrofa]
gnl|UG|Ssc#S55286644	2	0.58	0	0	0	0	"FS684721 full-length enriched swine cDNA library, adult longissimus Sus scrofa cDNA clone MLTL10082D05 5', mRNA sequence /clone=MLTL10082D05 /clone_end=5' /gb=FS684721 /gi=288287132 /ug=Ssc.75024 /len=713"	GO:0043005//neuron projection;GO:0031981//nuclear lumen;GO:0044297//cell body;GO:0008287//protein serine/threonine phosphatase complex;GO:0016020//membrane	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0019903//protein phosphatase binding;GO:0019904//protein domain specific binding	GO:0030520//estrogen receptor signaling pathway;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0043627//response to estrogen stimulus	gi|73962943|ref|XP_537404.2|/1.24056e-108/PREDICTED: similar to nuclear autoantigen [Canis familiaris]
gnl|UG|Ssc#S23694766	3	0.86	3	0.86	5	1.5	"1102199 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN105869 /gi=59781132 /ug=Ssc.38530 /len=694"	-	-	-	gi|296484533|gb|DAA26648.1|/2.0497e-28/hypothetical protein LOC767897 [Bos taurus]
gnl|UG|Ssc#S35165202	6	1.73	6	1.72	0	0	"Sus scrofa mRNA, clone:LVRM10169A10, expressed in liver /gb=AK233534 /gi=115554524 /ug=Ssc.18497 /len=1492"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016799//hydrolase activity, hydrolyzing N-glycosyl compounds;GO:0046914//transition metal ion binding;GO:0003677//DNA binding;GO:0005515//protein binding;GO:0004518//nuclease activity;GO:0016835//carbon-oxygen lyase activity"	GO:0032069;GO:0006281//DNA repair	gi|194038635|ref|XP_001924578.1|/0/PREDICTED: endonuclease 8-like 1 [Sus scrofa]
gnl|UG|Ssc#S58303499	3	0.86	5	1.43	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100155189 (LOC100155189), mRNA /cds=p(1,2199) /gb=XM_003132899 /gi=311270677 /ug=Ssc.10359 /len=2377"	GO:0043231//intracellular membrane-bounded organelle;GO:0031252//cell leading edge;GO:0016020//membrane	GO:0046872//metal ion binding;GO:0004857//enzyme inhibitor activity	GO:0030155//regulation of cell adhesion;GO:0045639//positive regulation of myeloid cell differentiation;GO:0008283//cell proliferation;GO:0008406//gonad development;GO:0032583//regulation of gene-specific transcription	gi|311270678|ref|XP_003132947.1|/0/PREDICTED: hypothetical protein LOC100155189 [Sus scrofa]
gnl|UG|Ssc#S35171285	8	2.3	27	7.72	68	20.44	"Sus scrofa mRNA, clone:OVRM10055D04, expressed in ovary /gb=AK235171 /gi=115548554 /ug=Ssc.1434 /len=1342"	GO:0044424//intracellular part	"GO:0016813//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines;GO:0031406//carboxylic acid binding"	GO:0006575//cellular modified amino acid metabolic process;GO:0044271//cellular nitrogen compound biosynthetic process;GO:0007165//signal transduction;GO:0043066//negative regulation of apoptosis;GO:0006525//arginine metabolic process	"gi|109070513|ref|XP_001113141.1|/9.16314e-130/PREDICTED: N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 isoform 2 [Macaca mulatta]"
gnl|UG|Ssc#S55324223	0	0	0	0	5	1.5	"Sus scrofa mRNA, clone:AMP010005B07, expressed in alveolar macrophages /gb=AK343635 /gi=288780649 /ug=Ssc.46782 /len=1959"	GO:0031224//intrinsic to membrane	"GO:0016788//hydrolase activity, acting on ester bonds"	-	gi|115495965|ref|NP_001069655.1|/0/abhydrolase domain-containing protein 3 [Bos taurus]
gnl|UG|Ssc#S58305569	10	2.88	17	4.86	8	2.4	"PREDICTED: Sus scrofa tubulin alpha chain-like 3-like (LOC100517730), mRNA /cds=p(1,1995) /gb=XM_003130829 /gi=311265895 /ug=Ssc.94200 /len=1995"	GO:0032991//macromolecular complex;GO:0015630//microtubule cytoskeleton	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0043623//cellular protein complex assembly;GO:0009207;GO:0007017//microtubule-based process	gi|311265896|ref|XP_003130877.1|/0/PREDICTED: tubulin alpha chain-like 3-like [Sus scrofa]
gnl|UG|Ssc#S26729857	2	0.58	0	0	0	0	"AJ940765 CSEQRAN17 Sus scrofa cDNA clone C0007315o03 3', mRNA sequence /clone=C0007315o03 /clone_end=3' /gb=AJ940765 /gi=74357581 /ug=Ssc.87803 /len=678"	-	-	-	-
gnl|UG|Ssc#S18379095	9	2.59	0	0	12	3.61	"923680 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK459204 /gi=40830485 /ug=Ssc.7408 /len=885"	-	-	-	-
gnl|UG|Ssc#S58304993	574	165.26	240	68.6	547	164.39	"PREDICTED: Sus scrofa ras-related protein Rab-5C-like (LOC100523862), mRNA /cds=p(214,864) /gb=XM_003131403 /gi=311267196 /ug=Ssc.82797 /len=1788"	GO:0005769//early endosome;GO:0048770;GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0035556//intracellular signal transduction;GO:0006996//organelle organization;GO:0007369//gastrulation;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0009207;GO:0007155//cell adhesion;GO:0006897//endocytosis	gi|77736431|ref|NP_001029915.1|/1.6903e-108/ras-related protein Rab-5C [Bos taurus]
gnl|UG|Ssc#S21547189	2	0.58	0	0	0	0	"UMC-pputal4-001-f02 Peripubertal ovary pputal Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO955893 /gi=51332956 /ug=Ssc.86274 /len=343"	-	-	-	-
gnl|UG|Ssc#S58302883	0	0	0	0	0	0	"PREDICTED: Sus scrofa SEC14 domain and spectrin repeat-containing protein 1-like (LOC100520222), partial mRNA /cds=p(1,1707) /gb=XM_003133513 /gi=311272724 /ug=Ssc.86196 /len=1707"	GO:0034703//cation channel complex	GO:0035091//phosphatidylinositol binding	GO:0032412	"gi|311272725|ref|XP_003133561.1|/0/PREDICTED: SEC14 domain and spectrin repeat-containing protein 1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S55254411	0	0	0	0	0	0	"FS675385 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010062E09 5', mRNA sequence /clone=KDN010062E09 /clone_end=5' /gb=FS675385 /gi=288249614 /ug=Ssc.82650 /len=891"	GO:0000267//cell fraction;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0000245//spliceosome assembly;GO:0044057	gi|237757269|ref|NP_001153764.1|/1.15e-118/CUGBP Elav-like family member 2 isoform 7 [Mus musculus]
gnl|UG|Ssc#S58305782	5	1.44	0	0	12	3.61	"PREDICTED: Sus scrofa kelch-like 12 (Drosophila) (KLHL12), mRNA /cds=p(164,1870) /gb=XM_003130611 /gi=311265458 /ug=Ssc.39044 /len=3202"	-	GO:0005488//binding	GO:0007166//cell surface receptor linked signaling pathway	"gi|119611850|gb|EAW91444.1|/0/kelch-like 12 (Drosophila), isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S55326873	27	7.77	12	3.43	14	4.21	"Sus scrofa mRNA, clone:OVR010096F06, expressed in ovary /gb=AK347778 /gi=288777953 /ug=Ssc.30993 /len=3659"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0016563//transcription activator activity	GO:0010038//response to metal ion;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006950//response to stress	gi|115749616|ref|NP_001030252.2|/0/metal regulatory transcription factor 1 [Bos taurus]
gnl|UG|Ssc#S35169820	0	0	4	1.14	4	1.2	"Sus scrofa mRNA, clone:LVR010003A10, expressed in liver /gb=AK232254 /gi=115550019 /ug=Ssc.11054 /len=1025"	GO:0031981//nuclear lumen;GO:0042575	GO:0005488//binding;GO:0034061	GO:0006289//nucleotide-excision repair;GO:0000723//telomere maintenance;GO:0006261//DNA-dependent DNA replication;GO:0051320;GO:0001935//endothelial cell proliferation	gi|311247163|ref|XP_003122520.1|/8.0136e-53/PREDICTED: DNA polymerase delta subunit 4-like [Sus scrofa]
gnl|UG|Ssc#S35172168	6	1.73	4	1.14	7	2.1	"Sus scrofa mRNA, clone:ITT010037B04, expressed in intestine /gb=AK231325 /gi=115547667 /ug=Ssc.24972 /len=2498"	GO:0043231//intracellular membrane-bounded organelle	"GO:0032559;GO:0042623//ATPase activity, coupled"	-	gi|122692565|ref|NP_001073740.1|/0/probable ATP-dependent RNA helicase DDX27 [Bos taurus]
gnl|UG|Ssc#S58310404	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa transcription factor 20-like (LOC100513085), mRNA /cds=p(1,5982) /gb=XM_003125996 /gi=311255003 /ug=Ssc.94517 /len=5982"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0003712//transcription cofactor activity	"GO:0006351//transcription, DNA-dependent"	gi|311255004|ref|XP_003126044.1|/0/PREDICTED: transcription factor 20-like [Sus scrofa]
gnl|UG|Ssc#S58302481	5	1.44	0	0	3	0.9	"PREDICTED: Sus scrofa UPF0600 protein C5orf51-like (LOC100522766), mRNA /cds=p(1,882) /gb=XM_003133915 /gi=311273637 /ug=Ssc.43666 /len=1676"	-	-	-	gi|311273638|ref|XP_003133963.1|/3.8896e-160/PREDICTED: UPF0600 protein C5orf51-like [Sus scrofa]
gnl|UG|Ssc#S58302951	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa sodium channel protein type 2 subunit alpha-like, transcript variant 1 (LOC100515171), mRNA /cds=p(1,6021) /gb=XM_003133444 /gi=311272551 /ug=Ssc.67061 /len=6021"	GO:0033267//axon part;GO:0005887//integral to plasma membrane	GO:0005272//sodium channel activity	GO:0008366//axon ensheathment;GO:0030001//metal ion transport	gi|311272552|ref|XP_003133492.1|/0/PREDICTED: sodium channel protein type 2 subunit alpha-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58302357	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa cytoplasmic polyadenylation element binding protein 4 (CPEB4), mRNA /cds=p(1012,3111) /gb=XM_003134043 /gi=311273890 /ug=Ssc.21671 /len=4555"	-	GO:0003676//nucleic acid binding	-	gi|311273891|ref|XP_003134091.1|/0/PREDICTED: cytoplasmic polyadenylation element-binding protein 4-like [Sus scrofa]
gnl|UG|Ssc#S58312718	25	7.2	58	16.58	24	7.21	"PREDICTED: Sus scrofa THO complex subunit 3-like (LOC100524425), mRNA /cds=p(57,1112) /gb=XM_003123664 /gi=311249634 /ug=Ssc.17981 /len=1482"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0006406//mRNA export from nucleus;GO:0006396//RNA processing	gi|311249635|ref|XP_003123712.1|/0/PREDICTED: THO complex subunit 3-like [Sus scrofa]
gnl|UG|Ssc#S35173954	459	132.15	87	24.87	276	82.95	"Sus scrofa mRNA, clone:OVR010042F08, expressed in ovary /gb=AK234314 /gi=115545881 /ug=Ssc.42590 /len=1819"	GO:0043231//intracellular membrane-bounded organelle;GO:0005624//membrane fraction;GO:0030016//myofibril;GO:0043234//protein complex;GO:0019898//extrinsic to membrane	GO:0004175//endopeptidase activity;GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0042802//identical protein binding;GO:0016836//hydro-lyase activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0051707//response to other organism;GO:0006007//glucose catabolic process;GO:0043009//chordate embryonic development;GO:0001101//response to acid;GO:0044093;GO:0016049//cell growth	gi|296479148|gb|DAA21263.1|/0/alpha-enolase [Bos taurus]
gnl|UG|Ssc#S55326901	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVR010087C11, expressed in ovary /gb=AK347750 /gi=288777925 /ug=Ssc.17758 /len=851"	GO:0031224//intrinsic to membrane	GO:0005488//binding	-	gi|84042519|ref|NP_001033583.1|/1.38251e-126/transmembrane protein 147 [Rattus norvegicus]
gnl|UG|Ssc#S47005563	8	2.3	2	0.57	8	2.4	"Sus scrofa solute carrier family 30 member 9 (SLC30A9) mRNA, complete cds /cds=p(76,1776) /gb=FJ164069 /gi=204309809 /ug=Ssc.72184 /len=1810"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0005488//binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0015075//ion transmembrane transporter activity	"GO:0006281//DNA repair;GO:0000041//transition metal ion transport;GO:0006351//transcription, DNA-dependent"	gi|212549651|ref|NP_001131104.1|/0/zinc transporter 9 [Sus scrofa]
gnl|UG|Ssc#S20116538	0	0	0	0	2	0.6	"Sus scrofa SRY (sex determining region Y)-box 9 (SOX9), mRNA /cds=p(4,1533) /gb=NM_213843 /gi=47523169 /ug=Ssc.16373 /len=1835"	-	-	-	-
gnl|UG|Ssc#S18382055	3	0.86	2	0.57	0	0	"932942 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK462164 /gi=40833445 /ug=Ssc.84700 /len=871"	GO:0000785//chromatin;GO:0070603//SWI/SNF-type complex;GO:0000794//condensed nuclear chromosome;GO:0044444//cytoplasmic part	"GO:0003916//DNA topoisomerase activity;GO:0019901//protein kinase binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0032559;GO:0042623//ATPase activity, coupled"	"GO:0006351//transcription, DNA-dependent;GO:0007131//reciprocal meiotic recombination;GO:0071780//mitotic cell cycle G2/M transition checkpoint;GO:0007059//chromosome segregation;GO:0006260//DNA replication"	gi|297671862|ref|XP_002814045.1|/1.85388e-166/PREDICTED: DNA topoisomerase 2-beta-like [Pongo abelii]
gnl|UG|Ssc#S35170161	34	9.79	35	10	33	9.92	"Sus scrofa mRNA, clone:LNG010057G05, expressed in lung /gb=AK231957 /gi=115549678 /ug=Ssc.12241 /len=1576"	GO:0032991//macromolecular complex;GO:0032432//actin filament bundle;GO:0005626//insoluble fraction;GO:0048770;GO:0005578//proteinaceous extracellular matrix;GO:0005768//endosome;GO:0019898//extrinsic to membrane;GO:0044459//plasma membrane part	GO:0035091//phosphatidylinositol binding;GO:0005083//small GTPase regulator activity;GO:0055102//lipase inhibitor activity;GO:0003779//actin binding;GO:0046872//metal ion binding	GO:0048731;GO:0030198//extracellular matrix organization;GO:0030195//negative regulation of blood coagulation;GO:0006906//vesicle fusion;GO:0001101//response to acid;GO:0044093;GO:0019222//regulation of metabolic process;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0046903//secretion	gi|54020966|ref|NP_001005726.1|/0/annexin A2 [Sus scrofa]
gnl|UG|Ssc#S6006891	3	0.86	0	0	2	0.6	"303887 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BG384676 /gi=13309148 /ti=448051961 /ug=Ssc.79517 /len=595"	-	-	-	-
gnl|UG|Ssc#S36162731	2	0.58	0	0	0	0	"Sus scrofa DNA methyltransferase 3a2 (Dnmt3a2) mRNA, complete cds /cds=p(44,2113) /gb=DQ785811 /gi=110559301 /ug=Ssc.1704 /len=2504"	GO:0034399//nuclear periphery;GO:0000790//nuclear chromatin	GO:0046914//transition metal ion binding;GO:0003886//DNA (cytosine-5-)-methyltransferase activity;GO:0043565//sequence-specific DNA binding	GO:0006575//cellular modified amino acid metabolic process;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006342//chromatin silencing;GO:0032776//DNA methylation on cytosine;GO:0006790//sulfur compound metabolic process;GO:0048232//male gamete generation;GO:0006325//chromatin organization	gi|296482345|gb|DAA24460.1|/0/DNA (cytosine-5-)-methyltransferase 3 alpha [Bos taurus]
gnl|UG|Ssc#S35170203	0	0	0	0	0	0	"Sus scrofa mRNA, clone:TES010023E10, expressed in testis /gb=AK238444 /gi=115549636 /ug=Ssc.5249 /len=1505"	GO:0043231//intracellular membrane-bounded organelle;GO:0043005//neuron projection;GO:0044444//cytoplasmic part;GO:0005694//chromosome	"GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups;GO:0048037//cofactor binding;GO:0016836//hydro-lyase activity"	GO:0001101//response to acid;GO:0051414//response to cortisol stimulus;GO:0046677//response to antibiotic;GO:0043627//response to estrogen stimulus;GO:0007584//response to nutrient;GO:0009887//organ morphogenesis;GO:0010001//glial cell differentiation;GO:0018065//protein-cofactor linkage;GO:0006779//porphyrin biosynthetic process;GO:0034097//response to cytokine stimulus;GO:0010288//response to lead ion;GO:0046685//response to arsenic-containing substance;GO:0014075//response to amine stimulus;GO:0006950//response to stress	gi|148234672|ref|NP_001090881.1|/0/porphobilinogen deaminase [Sus scrofa]
gnl|UG|Ssc#S23765177	36	10.36	2	0.57	9	2.7	"1123049 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN122796 /gi=59817075 /ug=Ssc.2557 /len=858"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0035556//intracellular signal transduction;GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|301764991|ref|XP_002917896.1|/9.48055e-91/PREDICTED: LOW QUALITY PROTEIN: transcriptional enhancer factor TEF-4-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35167497	7	2.02	2	0.57	2	0.6	"Sus scrofa mRNA, clone:AMP010009B06, expressed in alveolar macrophage /gb=AK230551 /gi=115552242 /ug=Ssc.47545 /len=2920"	GO:0031981//nuclear lumen;GO:0000152//nuclear ubiquitin ligase complex;GO:0044444//cytoplasmic part	GO:0019787//small conjugating protein ligase activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0007050//cell cycle arrest;GO:0051318//G1 phase;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0000070//mitotic sister chromatid segregation	gi|311250205|ref|XP_003123999.1|/0/PREDICTED: cell division cycle protein 23 homolog [Sus scrofa]
gnl|UG|Ssc#S23693543	0	0	3	0.86	0	0	"1100444 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN104646 /gi=59778898 /ug=Ssc.63257 /len=451"	-	-	-	-
gnl|UG|Ssc#S55317952	0	0	3	0.86	2	0.6	"FS692181 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRT10071A06 5', mRNA sequence /clone=OVRT10071A06 /clone_end=5' /gb=FS692181 /gi=288310285 /ug=Ssc.71517 /len=812"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016879//ligase activity, forming carbon-nitrogen bonds;GO:0016421//CoA carboxylase activity;GO:0032559;GO:0043169//cation binding"	-	"gi|73989258|ref|XP_860279.1|/3.60786e-121/PREDICTED: similar to propionyl-Coenzyme A carboxylase, alpha polypeptide precursor isoform 6 [Canis familiaris]"
gnl|UG|Ssc#S49954470	110	31.67	49	14.01	87	26.15	"Sus scrofa SFRS protein kinase 1 (SRPK1) mRNA, complete cds /cds=p(329,2296) /gb=FJ476290 /gi=218140851 /ug=Ssc.39656 /len=2499"	GO:0043231//intracellular membrane-bounded organelle	GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0032559	GO:0048869;GO:0006396//RNA processing;GO:0035556//intracellular signal transduction;GO:0006796//phosphate metabolic process;GO:0051704;GO:0010468//regulation of gene expression;GO:0006464//protein modification process	gi|221136925|ref|NP_001137585.1|/0/serine/threonine-protein kinase SRPK1 [Sus scrofa]
gnl|UG|Ssc#S35166819	63	18.14	13	3.72	33	9.92	"Sus scrofa mRNA, clone:THY010109D11, expressed in thymus /gb=AK239514 /gi=115552920 /ug=Ssc.42571 /len=1384"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane	GO:0015114//phosphate transmembrane transporter activity;GO:0015291//secondary active transmembrane transporter activity	GO:0051234//establishment of localization;GO:0044237//cellular metabolic process	"gi|256838109|ref|NP_001157984.1|/0/phosphate carrier protein, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S35173752	19	5.47	11	3.14	13	3.91	"Sus scrofa mRNA, clone:SPL010057B03, expressed in spleen /gb=AK237525 /gi=115546083 /ug=Ssc.10915 /len=1494"	GO:0031224//intrinsic to membrane	-	-	gi|296488475|gb|DAA30588.1|/2.95184e-31/dpy-19-like 1-like [Bos taurus]
gnl|UG|Ssc#S19539925	36	10.36	10	2.86	35	10.52	"943378 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN156021 /gi=46170451 /ug=Ssc.10055 /len=811"	-	-	-	-
gnl|UG|Ssc#S35173854	13	3.74	3	0.86	9	2.7	"Sus scrofa mRNA, clone:SPL010042B12, expressed in spleen /gb=AK237422 /gi=115545981 /ug=Ssc.5146 /len=1829"	GO:0031981//nuclear lumen	GO:0005488//binding	GO:0010035//response to inorganic substance;GO:0035196//production of miRNAs involved in gene silencing by miRNA	gi|296472969|gb|DAA15084.1|/0/serrate RNA effector molecule homolog [Bos taurus]
gnl|UG|Ssc#S55319557	21	6.05	6	1.72	16	4.81	"Sus scrofa mRNA, clone:THY010124A06, expressed in thymus /gb=AK352009 /gi=288785327 /ug=Ssc.43366 /len=1243"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0016251//general RNA polymerase II transcription factor activity;GO:0005515//protein binding	"GO:0006355//regulation of transcription, DNA-dependent"	gi|297282705|ref|XP_002802313.1|/1.94251e-104/PREDICTED: mediator of RNA polymerase II transcription subunit 18-like isoform 3 [Macaca mulatta]
gnl|UG|Ssc#S55321698	2644	761.22	14635	4183.39	4458	1339.75	"Sus scrofa mRNA, clone:ITT010030H04, expressed in small intestine /gb=AK344989 /gi=288783174 /ug=Ssc.19051 /len=839"	GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|148672373|gb|EDL04320.1|/7.13629e-51/mCG49427 [Mus musculus]
gnl|UG|Ssc#S46879642	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa serine/threonine-protein kinase Kist-like (LOC100152072), mRNA /cds=p(1,780) /gb=XM_001924250 /gi=311253937 /ug=Ssc.93951 /len=780"	GO:0043231//intracellular membrane-bounded organelle;GO:0030425//dendrite;GO:0030529//ribonucleoprotein complex	GO:0004672//protein kinase activity;GO:0003676//nucleic acid binding;GO:0032559	GO:0033157//regulation of intracellular protein transport;GO:0030030//cell projection organization;GO:0006468//protein phosphorylation;GO:0022402//cell cycle process;GO:0006446//regulation of translational initiation	gi|311253938|ref|XP_001924285.2|/3.94546e-138/PREDICTED: serine/threonine-protein kinase Kist-like [Sus scrofa]
gnl|UG|Ssc#S20116359	14	4.03	3	0.86	6	1.8	"Sus scrofa myoglobin (MB), mRNA /cds=p(60,524) /gb=NM_214236 /gi=47523545 /ug=Ssc.715 /len=1111"	-	GO:0005506//iron ion binding;GO:0022892	GO:0014721;GO:0009719;GO:0030218//erythrocyte differentiation;GO:0045444//fat cell differentiation;GO:0015669//gas transport;GO:0000302//response to reactive oxygen species	gi|47523546|ref|NP_999401.1|/9.86436e-84/myoglobin [Sus scrofa]
gnl|UG|Ssc#S55322692	4	1.15	3	0.86	5	1.5	"Sus scrofa mRNA, clone:DCI010032G11, expressed in dendritic cells (immature) /gb=AK344391 /gi=288782180 /ug=Ssc.9603 /len=2091"	GO:0031981//nuclear lumen	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0022613//ribonucleoprotein complex biogenesis;GO:0009207	gi|95769512|gb|ABF57441.1|/0/guanine nucleotide binding protein-like 2 (nucleolar) [Bos taurus]
gnl|UG|Ssc#S55320073	0	0	5	1.43	0	0	"Sus scrofa mRNA, clone:LVR010104C07, expressed in liver /gb=AK346017 /gi=288784799 /ug=Ssc.94587 /len=1263"	-	-	-	gi|297686619|ref|XP_002820842.1|/1.89632e-97/PREDICTED: leucine-rich repeat-containing protein C10orf11 homolog [Pongo abelii]
gnl|UG|Ssc#S17526025	0	0	0	0	0	0	"BX675225 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0028.c.05 3prim, mRNA sequence /clone=scac0028.c.05 /clone_end=3' /gb=BX675225 /gi=117784289 /ug=Ssc.23240 /len=859"	-	-	-	-
gnl|UG|Ssc#S58307038	11	3.17	0	0	8	2.4	"PREDICTED: Sus scrofa SEC31 homolog A (S. cerevisiae) (SEC31A), mRNA /cds=p(1,3582) /gb=XM_003129359 /gi=311262896 /ug=Ssc.56458 /len=4234"	GO:0012507//ER to Golgi transport vesicle membrane	GO:0005515//protein binding	GO:0010038//response to metal ion;GO:0006901//vesicle coating;GO:0048193//Golgi vesicle transport;GO:0006487//protein N-linked glycosylation	gi|311262897|ref|XP_003129407.1|/0/PREDICTED: protein transport protein Sec31A-like [Sus scrofa]
gnl|UG|Ssc#S18361607	2	0.58	0	0	0	0	"921364 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK457096 /gi=40804310 /ug=Ssc.81756 /len=707"	GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0046872//metal ion binding;GO:0015924;GO:0005515//protein binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0006950//response to stress;GO:0006487//protein N-linked glycosylation	gi|194221118|ref|XP_001492143.2|/1.14514e-85/PREDICTED: similar to ER degradation-enhancing alpha-mannosidase-like 1 [Equus caballus]
gnl|UG|Ssc#S58307419	6	1.73	14	4	10	3.01	"PREDICTED: Sus scrofa pre-mRNA 3'-end-processing factor FIP1-like (LOC100523128), mRNA /cds=p(1,936) /gb=XM_003128978 /gi=311262122 /ug=Ssc.83877 /len=1106"	-	-	-	-
gnl|UG|Ssc#S58310381	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa Josephin-1-like, transcript variant 1 (LOC100520958), mRNA /cds=p(764,1321) /gb=XM_003126017 /gi=311255061 /ug=Ssc.9695 /len=1623"	-	-	-	gi|311255062|ref|XP_003126065.1|/3.11588e-106/PREDICTED: Josephin-1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55322962	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:DCI010007F04, expressed in dendritic cells (immature) /gb=AK344320 /gi=288781910 /ug=Ssc.56331 /len=1479"	GO:0044429//mitochondrial part	GO:0005488//binding;GO:0016289//CoA hydrolase activity	GO:0009063//cellular amino acid catabolic process	"gi|114051840|ref|NP_001039878.1|/0/3-hydroxyisobutyryl-CoA hydrolase, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S20938107	4183	1204.31	8920	2549.77	5063	1521.57	"AJ649830 CSEQRAN19 Sus scrofa cDNA clone C0003273_J20, mRNA sequence /clone=C0003273_J20 /gb=AJ649830 /gi=49326675 /ug=Ssc.85630 /len=432"	GO:0015935//small ribosomal subunit	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0019080;GO:0006448//regulation of translational elongation;GO:0031016//pancreas development	gi|281347909|gb|EFB23493.1|/2.60603e-68/hypothetical protein PANDA_016815 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35171960	100	28.79	110	31.44	69	20.74	"Sus scrofa mRNA, clone:OVRM10022E05, expressed in ovary /gb=AK234851 /gi=115547875 /ug=Ssc.55551 /len=2255"	GO:0030175//filopodium;GO:0005856//cytoskeleton;GO:0005924//cell-substrate adherens junction;GO:0044444//cytoplasmic part;GO:0030027//lamellipodium	GO:0008092//cytoskeletal protein binding;GO:0019904//protein domain specific binding	GO:0014020;GO:0007010//cytoskeleton organization;GO:0006935//chemotaxis;GO:0034330;GO:0050851//antigen receptor-mediated signaling pathway	gi|194215620|ref|XP_001917059.1|/2.2911e-75/PREDICTED: similar to Vasodilator-stimulated phosphoprotein (VASP) [Equus caballus]
gnl|UG|Ssc#S18551520	10	2.88	5	1.43	6	1.8	"BX920171 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0006.m.24 5prim, mRNA sequence /clone=scan0006.m.24 /clone_end=5' /gb=BX920171 /gi=90240342 /ug=Ssc.19581 /len=872"	-	-	-	-
gnl|UG|Ssc#S55326568	17	4.89	19	5.43	10	3.01	"Sus scrofa mRNA, clone:OVRM10061E07, expressed in ovary /gb=AK348083 /gi=288778258 /ug=Ssc.5792 /len=3657"	GO:0005913//cell-cell adherens junction;GO:0019897//extrinsic to plasma membrane;GO:0031252//cell leading edge;GO:0005856//cytoskeleton;GO:0030141//stored secretory granule	GO:0050839//cell adhesion molecule binding;GO:0003779//actin binding	GO:0007043//cell-cell junction assembly;GO:0045597//positive regulation of cell differentiation;GO:0007409//axonogenesis;GO:0042476//odontogenesis;GO:0007405//neuroblast proliferation;GO:0008406//gonad development;GO:0022602//ovulation cycle process;GO:0048545//response to steroid hormone stimulus;GO:0071310//cellular response to organic substance;GO:0051259//protein oligomerization;GO:0006915//apoptosis;GO:0008589//regulation of smoothened signaling pathway	"gi|114601977|ref|XP_001172018.1|/0/PREDICTED: catenin, alpha 1 isoform 21 [Pan troglodytes]"
gnl|UG|Ssc#S58311914	64	18.43	30	8.58	47	14.12	"PREDICTED: Sus scrofa SET domain containing 1A (SETD1A), mRNA /cds=p(1,4653) /gb=XM_003124497 /gi=311251279 /ug=Ssc.5892 /len=5305"	GO:0034708;GO:0016585//chromatin remodeling complex	GO:0005488//binding	-	gi|311251280|ref|XP_003124545.1|/0/PREDICTED: histone-lysine N-methyltransferase SETD1A-like [Sus scrofa]
gnl|UG|Ssc#S39814954	5	1.44	3	0.86	2	0.6	"rcbl0_021771.y1 cbl Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV910232 /gi=178495917 /ug=Ssc.64072 /len=464"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0003677//DNA binding	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0032501//multicellular organismal process;GO:0014706//striated muscle tissue development	gi|290463401|sp|A0JN76.2|ZN238_BOVIN/2.57155e-90/RecName: Full=Zinc finger protein 238
gnl|UG|Ssc#S49953830	60	17.27	8	2.29	30	9.02	"Sus scrofa ER lipid raft-associated 1 (ERLIN1) mRNA, complete cds /cds=p(128,1174) /gb=FJ436385 /gi=217314884 /ug=Ssc.10857 /len=2177"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process	gi|218847756|ref|NP_001136368.1|/6.11044e-172/erlin-1 [Sus scrofa]
gnl|UG|Ssc#S35164303	14	4.03	3	0.86	16	4.81	"Sus scrofa mRNA, clone:MLN010100G07, expressed in mesenteric lymph node /gb=AK234036 /gi=115555423 /ug=Ssc.56691 /len=1162"	-	-	-	gi|297288816|ref|XP_002803419.1|/1.49544e-37/PREDICTED: hypothetical protein LOC100429328 [Macaca mulatta]
gnl|UG|Ssc#S55834196	35	10.08	69	19.72	125	37.57	"Sus scrofa cytoplasmic polyadenylation element binding protein 2 variant A (CPEB2) mRNA, complete cds /cds=p(107,1375) /gb=HM037344 /gi=296410589 /ug=Ssc.15385 /len=5163"	-	-	-	-
gnl|UG|Ssc#S35171925	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10026G10, expressed in ovary /gb=AK234886 /gi=115547910 /ug=Ssc.776 /len=1791"	-	GO:0008235//metalloexopeptidase activity;GO:0046914//transition metal ion binding	GO:0019538//protein metabolic process;GO:0032963//collagen metabolic process;GO:0019752//carboxylic acid metabolic process	gi|260593653|ref|NP_001073787.2|/0/xaa-Pro dipeptidase [Bos taurus]
gnl|UG|Ssc#S46879499	10	2.88	2	0.57	2	0.6	"PREDICTED: Sus scrofa protein FAM164A-like, transcript variant 1 (LOC100154167), mRNA /cds=p(136,1110) /gb=XM_001924406 /gi=311253699 /ug=Ssc.36595 /len=1683"	-	-	-	gi|194037151|ref|XP_001924441.1|/1.8196e-157/PREDICTED: protein FAM164A-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46875815	7	2.02	6	1.72	3	0.9	"PREDICTED: Sus scrofa SYAP1 protein, transcript variant 1 (LOC100153861), mRNA /cds=p(143,1219) /gb=XM_001924191 /gi=194044800 /ug=Ssc.43513 /len=2016"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|194044801|ref|XP_001924226.1|/4.27331e-172/PREDICTED: synapse-associated protein 1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S23213532	397	114.3	247	70.6	456	137.04	"Sus scrofa clone Clu_11781.scr.msk.p1.Contig1, mRNA sequence /gb=AY609445 /gi=52350730 /ug=Ssc.56650 /len=1762"	GO:0044424//intracellular part	GO:0032561;GO:0003824//catalytic activity;GO:0032559	GO:0009207	gi|296204491|ref|XP_002749373.1|/0/PREDICTED: obg-like ATPase 1-like [Callithrix jacchus]
gnl|UG|Ssc#S46878169	4	1.15	3	0.86	0	0	"PREDICTED: Sus scrofa histone H2B type 1-H-like (LOC100156932), mRNA /cds=p(26,424) /gb=XM_001928617 /gi=311259870 /ug=Ssc.58308 /len=2203"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0034728	gi|311259871|ref|XP_001928652.2|/1.81025e-46/PREDICTED: histone H2B type 1-H-like [Sus scrofa]
gnl|UG|Ssc#S46878469	23	6.62	4	1.14	33	9.92	"PREDICTED: Sus scrofa transcriptional regulating factor 1 (TRERF1), mRNA /cds=p(1,3609) /gb=XM_001928167 /gi=194039288 /ug=Ssc.94747 /len=3813"	GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding;GO:0016251//general RNA polymerase II transcription factor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding;GO:0003713//transcription coactivator activity	"GO:0065008;GO:0006355//regulation of transcription, DNA-dependent;GO:0032501//multicellular organismal process;GO:0008203//cholesterol metabolic process"	gi|194039289|ref|XP_001928202.1|/0/PREDICTED: transcriptional-regulating factor 1 [Sus scrofa]
gnl|UG|Ssc#S18386541	13	3.74	4	1.14	15	4.51	"937882 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK466654 /gi=40837931 /ug=Ssc.26234 /len=772"	-	-	-	-
gnl|UG|Ssc#S18337671	2	0.58	0	0	2	0.6	"BP464918 full-length enriched swine cDNA library, adult uterus Sus scrofa cDNA clone UTR010063H10 5', mRNA sequence /clone=UTR010063H10 /clone_end=5' /gb=BP464918 /gi=40485126 /ug=Ssc.84472 /len=821"	GO:0016604//nuclear body;GO:0030529//ribonucleoprotein complex	GO:0005488//binding	GO:0042254//ribosome biogenesis;GO:0009451//RNA modification	"gi|73999753|ref|XP_849017.1|/1.43925e-24/PREDICTED: similar to nucleolar protein family A, member 3 [Canis familiaris]"
gnl|UG|Ssc#S42951502	142	40.88	85	24.3	143	42.98	"Sus scrofa HLA-B associated transcript 2 mRNA, complete cds /cds=p(43,6543) /gb=EU076593 /gi=158537753 /ug=Ssc.6633 /len=6609"	-	GO:0005488//binding	-	gi|167908789|ref|NP_001108147.1|/0/HLA-B associated transcript 2 [Sus scrofa]
gnl|UG|Ssc#S58307287	2	0.58	4	1.14	2	0.6	"PREDICTED: Sus scrofa starch-binding domain-containing protein 1-like (LOC100522745), mRNA /cds=p(47,1114) /gb=XM_003129093 /gi=311262387 /ug=Ssc.13948 /len=2424"	GO:0016021//integral to membrane;GO:0005626//insoluble fraction	GO:0005488//binding	GO:0003012//muscle system process	gi|311262388|ref|XP_003129141.1|/0/PREDICTED: starch-binding domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58307588	7	2.02	0	0	2	0.6	"PREDICTED: Sus scrofa probable histone-lysine N-methyltransferase NSD2-like (LOC100515039), mRNA /cds=p(1,2493) /gb=XM_003128809 /gi=311261777 /ug=Ssc.38703 /len=2610"	GO:0031981//nuclear lumen;GO:0043232;GO:0005635//nuclear envelope	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0016279//protein-lysine N-methyltransferase activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0003285//septum secundum development;GO:0003284;GO:0006325//chromatin organization;GO:0009653//anatomical structure morphogenesis	gi|311261778|ref|XP_003128857.1|/0/PREDICTED: probable histone-lysine N-methyltransferase NSD2-like [Sus scrofa]
gnl|UG|Ssc#S26732718	6	1.73	0	0	9	2.7	"AJ943700 CSEQRAN17 Sus scrofa cDNA clone C0007316b05 5', mRNA sequence /clone=C0007316b05 /clone_end=5' /gb=AJ943700 /gi=74360442 /ug=Ssc.5173 /len=715"	-	-	-	-
gnl|UG|Ssc#S35171901	6	1.73	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10030D05, expressed in ovary /gb=AK234911 /gi=115547934 /ug=Ssc.28142 /len=2014"	GO:0031981//nuclear lumen	GO:0003677//DNA binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	"GO:0006351//transcription, DNA-dependent;GO:0048869"	gi|149713729|ref|XP_001501296.1|/0/PREDICTED: ets variant gene 6 (TEL oncogene) [Equus caballus]
gnl|UG|Ssc#S35171934	2	0.58	5	1.43	11	3.31	"Sus scrofa mRNA, clone:OVRM10025H02, expressed in ovary /gb=AK234877 /gi=115547901 /ug=Ssc.17264 /len=1599"	-	-	-	-
gnl|UG|Ssc#S23213516	10	2.88	5	1.43	11	3.31	"Sus scrofa clone Clu_12354.scr.msk.p1.Contig4, mRNA sequence /gb=AY609461 /gi=52350746 /ug=Ssc.8201 /len=1718"	GO:0043234//protein complex;GO:0000790//nuclear chromatin;GO:0044444//cytoplasmic part	GO:0016790//thiolester hydrolase activity;GO:0061135;GO:0008238//exopeptidase activity;GO:0032403//protein complex binding;GO:0019783//small conjugating protein-specific protease activity	GO:0010498//proteasomal protein catabolic process;GO:0019941//modification-dependent protein catabolic process;GO:0010466//negative regulation of peptidase activity;GO:0021537//telencephalon development;GO:0009653//anatomical structure morphogenesis;GO:0070646	gi|178056486|ref|NP_001116682.1|/5.58117e-178/ubiquitin carboxyl-terminal hydrolase isozyme L5 [Sus scrofa]
gnl|UG|Ssc#S20936069	113	32.53	100	28.58	105	31.56	"AJ647792 CSEQRAN19 Sus scrofa cDNA clone C0003260_L05, mRNA sequence /clone=C0003260_L05 /gb=AJ647792 /gi=49324637 /ug=Ssc.85532 /len=569"	GO:0000315//organellar large ribosomal subunit;GO:0043231//intracellular membrane-bounded organelle	GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|157820361|ref|NP_001102349.1|/1.75809e-49/39S ribosomal protein L36, mitochondrial [Rattus norvegicus]"
gnl|UG|Ssc#S58305449	6	1.73	0	0	5	1.5	"PREDICTED: Sus scrofa cytoskeleton associated protein 2 (CKAP2), mRNA /cds=p(117,2171) /gb=XM_003130956 /gi=311266188 /ug=Ssc.26899 /len=2171"	GO:0005819//spindle	-	GO:0012501//programmed cell death	gi|311266189|ref|XP_003131004.1|/0/PREDICTED: cytoskeleton-associated protein 2-like [Sus scrofa]
gnl|UG|Ssc#S55321413	24	6.91	5	1.43	19	5.71	"Sus scrofa mRNA, clone:TES010096C07, expressed in testis /gb=AK351343 /gi=288783459 /ug=Ssc.57966 /len=1795"	GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding	GO:0019538//protein metabolic process	gi|116004143|ref|NP_001070432.1|/0/mitochondrial-processing peptidase subunit alpha precursor [Bos taurus]
gnl|UG|Ssc#S55324216	13	3.74	6	1.72	10	3.01	"Sus scrofa mRNA, clone:AMP010006C10, expressed in alveolar macrophages /gb=AK343642 /gi=288780656 /ug=Ssc.11253 /len=3086"	GO:0031224//intrinsic to membrane	-	-	gi|149706225|ref|XP_001501877.1|/0/PREDICTED: hypothetical protein [Equus caballus]
gnl|UG|Ssc#S48803429	11	3.17	7	2	14	4.21	"Sus scrofa dyskeratosis congenita 1 (DKC1) mRNA, complete cds /cds=p(13,1581) /gb=FJ236702 /gi=213688832 /ug=Ssc.21597 /len=1627"	GO:0016604//nuclear body;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding;GO:0003964//RNA-directed DNA polymerase activity;GO:0016866//intramolecular transferase activity	GO:0009451//RNA modification;GO:0006278//RNA-dependent DNA replication;GO:0042254//ribosome biogenesis;GO:0010467//gene expression	gi|217416474|ref|NP_001136140.1|/0/H/ACA ribonucleoprotein complex subunit 4 [Sus scrofa]
gnl|UG|Ssc#S58314798	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa bromo adjacent homology domain-containing 1 protein-like (LOC100520227), mRNA /cds=p(1,2337) /gb=XM_003121595 /gi=311244995 /ug=Ssc.84836 /len=2337"	GO:0043232;GO:0016585//chromatin remodeling complex	GO:0003676//nucleic acid binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0006338//chromatin remodeling"	gi|311244996|ref|XP_003121643.1|/0/PREDICTED: bromo adjacent homology domain-containing 1 protein-like [Sus scrofa]
gnl|UG|Ssc#S24455928	0	0	0	0	0	0	"Sus scrofa PUA protein mRNA, complete cds /cds=p(50,592) /gb=AY864609 /gi=62208250 /ug=Ssc.53939 /len=2136"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0042254//ribosome biogenesis	gi|114326181|ref|NP_001041536.1|/6.09077e-100/60S ribosome subunit biogenesis protein NIP7 homolog [Sus scrofa]
gnl|UG|Ssc#S58304633	11	3.17	5	1.43	4	1.2	"PREDICTED: Sus scrofa UPF0378 protein KIAA0100-like (LOC100513044), mRNA /cds=p(83,715) /gb=XM_003131765 /gi=311267944 /ug=Ssc.16694 /len=1366"	-	-	-	-
gnl|UG|Ssc#S35164156	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:SPL010011E11, expressed in spleen /gb=AK237202 /gi=115555570 /ug=Ssc.39574 /len=1735"	-	-	-	-
gnl|UG|Ssc#S46880007	10	2.88	0	0	12	3.61	"PREDICTED: Sus scrofa SHC (Src homology 2 domain containing) transforming protein 1, transcript variant 1 (SHC1), mRNA /cds=p(223,1974) /gb=XM_001929397 /gi=311254194 /ug=Ssc.5093 /len=3518"	GO:0043234//protein complex;GO:0031090//organelle membrane;GO:0044429//mitochondrial part	"GO:0030674//protein binding, bridging;GO:0070851//growth factor receptor binding;GO:0008289//lipid binding;GO:0045309//protein phosphorylated amino acid binding"	GO:0007599//hemostasis;GO:0006275//regulation of DNA replication;GO:0007155//cell adhesion;GO:0019229//regulation of vasoconstriction;GO:0000302//response to reactive oxygen species;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0030036//actin cytoskeleton organization;GO:0043434//response to peptide hormone stimulus;GO:0008284//positive regulation of cell proliferation;GO:0030030//cell projection organization;GO:0007264//small GTPase mediated signal transduction;GO:0014070//response to organic cyclic compound;GO:0010469//regulation of receptor activity;GO:0009887//organ morphogenesis;GO:0030154//cell differentiation;GO:0002376//immune system process;GO:0031960//response to corticosteroid stimulus;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0000165//MAPKKK cascade	gi|194036098|ref|XP_001929432.1|/0/PREDICTED: SHC-transforming protein 1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55295688	2	0.58	0	0	0	0	"FS678824 full-length enriched swine cDNA library, adult longissimus Sus scrofa cDNA clone MLTL10005B08 5', mRNA sequence /clone=MLTL10005B08 /clone_end=5' /gb=FS678824 /gi=288293720 /ug=Ssc.78262 /len=438"	-	-	-	gi|260909098|gb|ACX54186.1|/5.91206e-08/APOBEC3 splice variant [Sus scrofa]
gnl|UG|Ssc#S58311681	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa mitogen-activated protein kinase 8 interacting protein 3 (MAPK8IP3), mRNA /cds=p(1,4185) /gb=XM_003124754 /gi=311251762 /ug=Ssc.1410 /len=5605"	GO:0031982//vesicle;GO:0000267//cell fraction;GO:0032589//neuron projection membrane;GO:0012505//endomembrane system;GO:0005783//endoplasmic reticulum	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0008092//cytoskeletal protein binding;GO:0019900//kinase binding;GO:0032947//protein complex scaffold"	GO:0033036;GO:0006810//transport;GO:0010467//gene expression;GO:0045597//positive regulation of cell differentiation;GO:0043408//regulation of MAPKKK cascade;GO:0043009//chordate embryonic development;GO:0007420//brain development;GO:0006935//chemotaxis;GO:0009887//organ morphogenesis;GO:0000187//activation of MAPK activity	gi|311251763|ref|XP_003124802.1|/0/PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58308330	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa mediator of RNA polymerase II transcription subunit 8-like (LOC100517766), mRNA /cds=p(12,818) /gb=XM_003128065 /gi=311259469 /ug=Ssc.20058 /len=2364"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0016251//general RNA polymerase II transcription factor activity	"GO:0006355//regulation of transcription, DNA-dependent"	gi|311259470|ref|XP_003128113.1|/4.85956e-138/PREDICTED: mediator of RNA polymerase II transcription subunit 8-like [Sus scrofa]
gnl|UG|Ssc#S23762445	18	5.18	2	0.57	6	1.8	"1120046 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN120064 /gi=59814332 /ug=Ssc.27373 /len=754"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0005488//binding	"GO:0006356//regulation of transcription from RNA polymerase I promoter;GO:0006352//transcription initiation, DNA-dependent;GO:0006342//chromatin silencing;GO:0006353//transcription termination, DNA-dependent;GO:0006354//transcription elongation, DNA-dependent"	gi|301768751|ref|XP_002919784.1|/2.32336e-124/PREDICTED: nucleolar transcription factor 1-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46879476	160	46.06	349	99.76	84	25.24	"PREDICTED: Sus scrofa E1A binding protein p300 (EP300), mRNA /cds=p(1,7266) /gb=XM_001929213 /gi=194037198 /ug=Ssc.22177 /len=8365"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0005815//microtubule organizing center	GO:0030528//transcription regulator activity;GO:0035258//steroid hormone receptor binding;GO:0004468//lysine N-acetyltransferase activity;GO:0046872//metal ion binding;GO:0003712//transcription cofactor activity;GO:0008134//transcription factor binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003682//chromatin binding;GO:0019901//protein kinase binding;GO:0000977	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0001932//regulation of protein phosphorylation;GO:0010557;GO:0051495//positive regulation of cytoskeleton organization;GO:0014706//striated muscle tissue development;GO:0007243//intracellular protein kinase cascade;GO:0030162//regulation of proteolysis;GO:0033143//regulation of steroid hormone receptor signaling pathway;GO:0009653//anatomical structure morphogenesis;GO:0031960//response to corticosteroid stimulus;GO:0008630//DNA damage response, signal transduction resulting in induction of apoptosis;GO:0009101//glycoprotein biosynthetic process;GO:0000060//protein import into nucleus, translocation;GO:0034622;GO:0030307//positive regulation of cell growth;GO:0009952//anterior/posterior pattern formation;GO:0006474//N-terminal protein amino acid acetylation;GO:0009892//negative regulation of metabolic process;GO:0010038//response to metal ion;GO:0016573//histone acetylation;GO:0009746;GO:0030323//respiratory tube development;GO:0006412//translation;GO:0043388//positive regulation of DNA binding"	gi|194037199|ref|XP_001929248.1|/0/PREDICTED: histone acetyltransferase p300-like [Sus scrofa]
gnl|UG|Ssc#S58301164	9	2.59	0	0	0	0	"PREDICTED: Sus scrofa cleavage stimulation factor subunit 2-like (LOC100515986), mRNA /cds=p(1,1719) /gb=XM_003135231 /gi=311276613 /ug=Ssc.3557 /len=1947"	GO:0005849//mRNA cleavage factor complex	GO:0003676//nucleic acid binding	"GO:0000377;GO:0031124//mRNA 3'-end processing;GO:0006353//transcription termination, DNA-dependent"	gi|311276614|ref|XP_003135279.1|/0/PREDICTED: cleavage stimulation factor subunit 2-like [Sus scrofa]
gnl|UG|Ssc#S40159471	3	0.86	8	2.29	0	0	"rhyp32c_d7.y1 hyp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW254378 /gi=182587334 /ug=Ssc.60195 /len=619"	-	-	-	-
gnl|UG|Ssc#S20936657	975	280.71	401	114.63	697	209.47	"AJ648380 CSEQRAN19 Sus scrofa cDNA clone C0003264_H23, mRNA sequence /clone=C0003264_H23 /gb=AJ648380 /gi=49325225 /ug=Ssc.94871 /len=420"	GO:0005743//mitochondrial inner membrane;GO:0031224//intrinsic to membrane	GO:0015002//heme-copper terminal oxidase activity	GO:0006818//hydrogen transport;GO:0006811//ion transport;GO:0022900//electron transport chain	"gi|65301490|ref|NP_877971.2|/1.3713e-40/cytochrome c oxidase subunit 7B, mitochondrial precursor [Rattus norvegicus]"
gnl|UG|Ssc#S31119448	164	47.22	421	120.34	142	42.67	"1541807 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY423286 /gi=87224589 /ug=Ssc.32902 /len=665"	-	-	-	-
gnl|UG|Ssc#S58307474	7	2.02	0	0	13	3.91	"PREDICTED: Sus scrofa protein NOXP20-like (LOC100525173), mRNA /cds=p(72,1760) /gb=XM_003128921 /gi=311262007 /ug=Ssc.19323 /len=3245"	-	-	-	gi|311262008|ref|XP_003128969.1|/0/PREDICTED: protein NOXP20-like [Sus scrofa]
gnl|UG|Ssc#S58305010	0	0	0	0	0	0	"PREDICTED: Sus scrofa contactin-associated protein 1-like (LOC100521039), mRNA /cds=p(11,2176) /gb=XM_003131395 /gi=311267162 /ug=Ssc.85023 /len=2176"	GO:0033267//axon part;GO:0005887//integral to plasma membrane	"GO:0030674//protein binding, bridging;GO:0004871//signal transducer activity;GO:0019904//protein domain specific binding"	GO:0008366//axon ensheathment;GO:0030030//cell projection organization;GO:0006935//chemotaxis	gi|311267163|ref|XP_003131443.1|/0/PREDICTED: contactin-associated protein 1-like [Sus scrofa]
gnl|UG|Ssc#S40784253	20	5.76	25	7.15	10	3.01	"Sus scrofa TANK binding kinase TBK1 (TBK1) mRNA, complete cds /cds=p(1,2190) /gb=EU091339 /gi=156446283 /ug=Ssc.6641 /len=2190"	GO:0031090//organelle membrane;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0004672//protein kinase activity;GO:0032559	GO:0007166//cell surface receptor linked signaling pathway;GO:0032481//positive regulation of type I interferon production;GO:0001818//negative regulation of cytokine production;GO:0042742//defense response to bacterium;GO:0002224//toll-like receptor signaling pathway;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0006464//protein modification process;GO:0042108//positive regulation of cytokine biosynthetic process	gi|157427711|ref|NP_001098762.1|/0/serine/threonine-protein kinase TBK1 [Sus scrofa]
gnl|UG|Ssc#S46876273	5	1.44	6	1.72	0	0	"PREDICTED: Sus scrofa uncharacterized protein C2orf24 homolog (LOC100157604), mRNA /cds=p(1,1236) /gb=XM_001925544 /gi=311273089 /ug=Ssc.21623 /len=1891"	GO:0016020//membrane	-	-	gi|311273090|ref|XP_001925579.2|/0/PREDICTED: uncharacterized protein C2orf24 homolog [Sus scrofa]
gnl|UG|Ssc#S58311509	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa carbohydrate sulfotransferase 10 (CHST10), mRNA /cds=p(270,1343) /gb=XM_003124889 /gi=311252119 /ug=Ssc.3705 /len=2564"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0008146//sulfotransferase activity	GO:0007613//memory;GO:0005975//carbohydrate metabolic process;GO:0009987//cellular process	gi|311252120|ref|XP_003124937.1|/0/PREDICTED: carbohydrate sulfotransferase 10-like [Sus scrofa]
gnl|UG|Ssc#S55321356	46	13.24	10	2.86	36	10.82	"Sus scrofa mRNA, clone:ITT010066C11, expressed in small intestine /gb=AK345131 /gi=288783516 /ug=Ssc.63249 /len=3278"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005048//signal sequence binding;GO:0022892	GO:0006606//protein import into nucleus;GO:0051704;GO:0016070//RNA metabolic process	gi|259535856|sp|Q3SYU7.2|TNPO1_BOVIN/0/RecName: Full=Transportin-1; AltName: Full=Importin beta-2; AltName: Full=Karyopherin beta-2
gnl|UG|Ssc#S46877713	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa tyrosine-protein phosphatase non-receptor type 23-like (LOC100158195), mRNA /cds=p(69,3305) /gb=XM_001926916 /gi=311268811 /ug=Ssc.77377 /len=3305"	GO:0005815//microtubule organizing center	GO:0016787//hydrolase activity	GO:0048858//cell projection morphogenesis	gi|311268812|ref|XP_001926951.2|/0/PREDICTED: tyrosine-protein phosphatase non-receptor type 23-like [Sus scrofa]
gnl|UG|Ssc#S58303299	4	1.15	0	0	7	2.1	"PREDICTED: Sus scrofa LIM domain binding 3 (LDB3), mRNA /cds=p(1,2169) /gb=XM_003133097 /gi=311271463 /ug=Ssc.33274 /len=5119"	GO:0031674//I band	GO:0046914//transition metal ion binding;GO:0019901//protein kinase binding	-	gi|311271464|ref|XP_003133145.1|/0/PREDICTED: LIM domain-binding protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58304119	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa BTB/POZ domain-containing protein KCTD6-like (LOC100516225), mRNA /cds=p(37,750) /gb=XM_003132278 /gi=311269064 /ug=Ssc.46220 /len=1499"	GO:0005887//integral to plasma membrane	GO:0005267//potassium channel activity	GO:0034220//ion transmembrane transport;GO:0030001//metal ion transport	gi|189571691|ref|NP_699162.3|/1.74241e-132/BTB/POZ domain-containing protein KCTD6 [Homo sapiens]
gnl|UG|Ssc#S35167175	55	15.83	60	17.15	55	16.53	"Sus scrofa mRNA, clone:LVRM10022G07, expressed in liver /gb=AK232769 /gi=115552564 /ug=Ssc.55529 /len=1241"	GO:0005813//centrosome;GO:0030990	GO:0005488//binding	GO:0071842	gi|291405510|ref|XP_002718825.1|/2.26966e-71/PREDICTED: intraflagellar transport protein IFT20-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S35168594	0	0	2	0.57	3	0.9	"Sus scrofa mRNA, clone:OVRM10131D06, expressed in ovary /gb=AK235972 /gi=115551096 /ug=Ssc.12764 /len=809"	-	-	-	gi|148690596|gb|EDL22543.1|/2.48977e-45/mCG56521 [Mus musculus]
gnl|UG|Ssc#S58314299	3	0.86	4	1.14	2	0.6	"PREDICTED: Sus scrofa multiple epidermal growth factor-like domains protein 9-like (LOC100525851), mRNA /cds=p(1,1800) /gb=XM_003122102 /gi=311246295 /ug=Ssc.11067 /len=2561"	GO:0031224//intrinsic to membrane	GO:0046872//metal ion binding;GO:0004871//signal transducer activity	GO:0023052//signaling	gi|311246296|ref|XP_003122150.1|/0/PREDICTED: multiple epidermal growth factor-like domains protein 9-like [Sus scrofa]
gnl|UG|Ssc#S58301938	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa matrilin-4-like (LOC100510939), mRNA /cds=p(656,2821) /gb=XM_003134458 /gi=311274908 /ug=Ssc.45392 /len=2821"	-	GO:0005488//binding	-	gi|311274909|ref|XP_003134506.1|/0/PREDICTED: matrilin-4-like [Sus scrofa]
gnl|UG|Ssc#S18558146	95	27.35	44	12.58	189	56.8	"BX926797 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0015.c.04 5prim, mRNA sequence /clone=scan0015.c.04 /clone_end=5' /gb=BX926797 /gi=90231137 /ug=Ssc.40521 /len=861"	-	-	-	-
gnl|UG|Ssc#S58311134	49	14.11	92	26.3	74	22.24	"PREDICTED: Sus scrofa protein yippee-like 5-like, transcript variant 5 (LOC100516132), mRNA /cds=p(509,913) /gb=XM_003125270 /gi=311252882 /ug=Ssc.912 /len=2590"	-	"GO:0016671//oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor"	GO:0008152//metabolic process	gi|311252883|ref|XP_003125318.1|/5.72296e-71/PREDICTED: protein yippee-like 5-like isoform 5 [Sus scrofa]
gnl|UG|Ssc#S31112090	43	12.38	20	5.72	81	24.34	"1528136 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY415928 /gi=87217231 /ug=Ssc.89189 /len=507"	GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|11415026|ref|NP_000971.1|/2.50753e-85/60S ribosomal protein L18a [Homo sapiens]
gnl|UG|Ssc#S46879561	17	4.89	3	0.86	25	7.51	"PREDICTED: Sus scrofa phosphatidylserine synthase 1-like (LOC100156809), partial mRNA /cds=p(1,726) /gb=XM_001926975 /gi=311253595 /ug=Ssc.1972 /len=1732"	-	-	-	"gi|311253596|ref|XP_001927010.2|/3.02816e-139/PREDICTED: phosphatidylserine synthase 1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58313371	0	0	0	0	0	0	"PREDICTED: Sus scrofa zinc transporter ZIP3-like (LOC100515818), mRNA /cds=p(153,1097) /gb=XM_003123026 /gi=311248311 /ug=Ssc.19294 /len=1322"	GO:0031224//intrinsic to membrane	GO:0046915//transition metal ion transmembrane transporter activity	GO:0006829//zinc ion transport	gi|311248312|ref|XP_003123074.1|/3.6238e-155/PREDICTED: zinc transporter ZIP3-like [Sus scrofa]
gnl|UG|Ssc#S35170550	34	9.79	32	9.15	31	9.32	"Sus scrofa mRNA, clone:OVRM10058C09, expressed in ovary /gb=AK235210 /gi=115549289 /ug=Ssc.82454 /len=1988"	GO:0031224//intrinsic to membrane	GO:0004888//transmembrane receptor activity	GO:0007165//signal transduction	gi|281342757|gb|EFB18341.1|/0/hypothetical protein PANDA_017968 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58306311	16	4.61	4	1.14	8	2.4	"PREDICTED: Sus scrofa junctional adhesion molecule C-like (LOC100520043), mRNA /cds=p(1,1557) /gb=XM_003130087 /gi=311264372 /ug=Ssc.38630 /len=1944"	GO:0043296//apical junction complex;GO:0031224//intrinsic to membrane	GO:0042802//identical protein binding;GO:0005102//receptor binding;GO:0046983//protein dimerization activity	GO:0008366//axon ensheathment;GO:0016337//cell-cell adhesion;GO:0006954//inflammatory response;GO:0048870//cell motility;GO:0007163//establishment or maintenance of cell polarity;GO:0002262//myeloid cell homeostasis;GO:0006955//immune response;GO:0048232//male gamete generation;GO:0002244//hemopoietic progenitor cell differentiation;GO:0007599//hemostasis;GO:0007281//germ cell development;GO:0031589//cell-substrate adhesion	gi|311264373|ref|XP_003130135.1|/0/PREDICTED: junctional adhesion molecule C-like [Sus scrofa]
gnl|UG|Ssc#S58308857	2	0.58	0	0	8	2.4	"PREDICTED: Sus scrofa hypothetical protein LOC100519197 (LOC100519197), mRNA /cds=p(1,627) /gb=XM_003127546 /gi=311258387 /ug=Ssc.10189 /len=690"	-	-	-	gi|311258388|ref|XP_003127594.1|/1.92148e-103/PREDICTED: hypothetical protein LOC100519197 [Sus scrofa]
gnl|UG|Ssc#S58309173	28	8.06	0	0	27	8.11	"PREDICTED: Sus scrofa cleft lip and palate transmembrane protein 1-like (LOC100511021), mRNA /cds=p(10,2004) /gb=XM_003127223 /gi=311257745 /ug=Ssc.27346 /len=2433"	GO:0009986//cell surface;GO:0016021//integral to membrane	-	GO:0033077//T cell differentiation in thymus	gi|311257746|ref|XP_003127271.1|/0/PREDICTED: LOW QUALITY PROTEIN: cleft lip and palate transmembrane protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35165684	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:LVRM10110F09, expressed in liver /gb=AK233251 /gi=115554042 /ug=Ssc.24931 /len=1613"	GO:0043231//intracellular membrane-bounded organelle	GO:0016831//carboxy-lyase activity	GO:0006644//phospholipid metabolic process	gi|297591971|ref|NP_001172059.1|/0/phosphatidylserine decarboxylase proenzyme [Sus scrofa]
gnl|UG|Ssc#S35172619	15	4.32	0	0	9	2.7	"Sus scrofa mRNA, clone:OVR010092F05, expressed in ovary /gb=AK234589 /gi=115547216 /ug=Ssc.79002 /len=2499"	-	-	-	gi|296211536|ref|XP_002752462.1|/0/PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Callithrix jacchus]
gnl|UG|Ssc#S58304169	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa cytochrome b561 domain-containing protein 2-like (LOC100517372), mRNA /cds=p(220,888) /gb=XM_003132228 /gi=311268945 /ug=Ssc.2804 /len=1262"	GO:0016020//membrane	-	-	gi|311268946|ref|XP_003132276.1|/3.12215e-92/PREDICTED: cytochrome b561 domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S55236863	0	0	0	0	2	0.6	"FS641094 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10014A10 5', mRNA sequence /clone=BFLT10014A10 /clone_end=5' /gb=FS641094 /gi=288227548 /ug=Ssc.77472 /len=795"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0019899//enzyme binding	GO:0009888//tissue development;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0002761//regulation of myeloid leukocyte differentiation	gi|297716500|ref|XP_002834554.1|/1.32263e-96/PREDICTED: zinc finger and BTB domain-containing protein 7A-like [Pongo abelii]
gnl|UG|Ssc#S50838379	8	2.3	0	0	4	1.2	"Sus scrofa matrix metalloproteinase-2 (MMP-2) mRNA, complete cds /cds=p(305,2290) /gb=FJ394382 /gi=224466301 /ug=Ssc.5713 /len=3113"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0030016//myofibril;GO:0031012//extracellular matrix	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0009605//response to external stimulus;GO:0060343;GO:0007155//cell adhesion;GO:0040007//growth;GO:0001568//blood vessel development;GO:0022602//ovulation cycle process;GO:0019229//regulation of vasoconstriction;GO:0001503//ossification;GO:0000302//response to reactive oxygen species;GO:0048870//cell motility;GO:0031103//axon regeneration;GO:0002009//morphogenesis of an epithelium;GO:0014070//response to organic cyclic compound;GO:0006915//apoptosis;GO:0009628//response to abiotic stimulus;GO:0070555//response to interleukin-1;GO:0032963//collagen metabolic process;GO:0032355//response to estradiol stimulus;GO:0019538//protein metabolic process	gi|47523462|ref|NP_999357.1|/0/gelatinase A [Sus scrofa]
gnl|UG|Ssc#S55325067	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:PTG010100E02, expressed in pituitary gland /gb=AK349541 /gi=288779805 /ug=Ssc.48906 /len=2233"	-	GO:0005488//binding	-	gi|149694623|ref|XP_001498080.1|/5.18417e-158/PREDICTED: similar to zinc finger protein 643 [Equus caballus]
gnl|UG|Ssc#S35172231	0	0	0	0	0	0	"Sus scrofa mRNA, clone:ITT010025E06, expressed in intestine /gb=AK231262 /gi=115547604 /ug=Ssc.30516 /len=2808"	GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0006810//transport;GO:0035556//intracellular signal transduction;GO:0009207	gi|149944729|ref|NP_001092564.1|/8.9339e-110/ras-related protein Rab-7L1 [Bos taurus]
gnl|UG|Ssc#S46916721	0	0	0	0	2	0.6	"Sus scrofa kruppel-like factor 6 (KLF6) mRNA, complete cds /cds=p(208,1059) /gb=EF095722 /gi=239976799 /ug=Ssc.43880 /len=3986"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0043566//structure-specific DNA binding	GO:0030098//lymphocyte differentiation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0009611//response to wounding;GO:0007166//cell surface receptor linked signaling pathway	gi|73949190|ref|XP_544279.2|/8.00213e-161/PREDICTED: similar to Kruppel-like factor 6 [Canis familiaris]
gnl|UG|Ssc#S35167750	167	48.08	73	20.87	126	37.87	"Sus scrofa mRNA, clone:THY010070H07, expressed in thymus /gb=AK239182 /gi=115551989 /ug=Ssc.17001 /len=1697"	-	-	-	-
gnl|UG|Ssc#S55267477	392	112.86	860	245.83	309	92.86	"FS676065 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010071B07 5', mRNA sequence /clone=KDN010071B07 /clone_end=5' /gb=FS676065 /gi=288268055 /ug=Ssc.31332 /len=802"	GO:0043232;GO:0031091//platelet alpha granule	GO:0008092//cytoskeletal protein binding	GO:0016477//cell migration;GO:0030837//negative regulation of actin filament polymerization;GO:0001775//cell activation;GO:0006887//exocytosis;GO:0007599//hemostasis	gi|150387455|gb|ABR68248.1|/1.20039e-20/thymosin beta 4 X chromosome [Cervus elaphus]
gnl|UG|Ssc#S58314894	26	7.49	7	2	11	3.31	"PREDICTED: Sus scrofa transient receptor potential cation channel, subfamily M, member 7 (TRPM7), mRNA /cds=p(214,5814) /gb=XM_003121515 /gi=311244742 /ug=Ssc.7120 /len=7163"	GO:0031224//intrinsic to membrane;GO:0031252//cell leading edge	GO:0008092//cytoskeletal protein binding;GO:0043169//cation binding;GO:0004672//protein kinase activity;GO:0004871//signal transducer activity;GO:0005261//cation channel activity;GO:0032559	GO:0006468//protein phosphorylation;GO:0007160//cell-matrix adhesion;GO:0023052//signaling;GO:0030036//actin cytoskeleton organization;GO:0006816//calcium ion transport	gi|311244743|ref|XP_003121563.1|/0/PREDICTED: transient receptor potential cation channel subfamily M member 7 [Sus scrofa]
gnl|UG|Ssc#S58310568	1327	382.05	1398	399.62	919	276.18	"PREDICTED: Sus scrofa cold shock domain-containing protein E1-like, transcript variant 1 (LOC100515375), mRNA /cds=p(500,2803) /gb=XM_003125831 /gi=311254535 /ug=Ssc.2026 /len=4069"	GO:0019866//organelle inner membrane	GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent;GO:0008406//gonad development"	gi|311254536|ref|XP_003125879.1|/0/PREDICTED: cold shock domain-containing protein E1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58305465	8	2.3	0	0	2	0.6	"PREDICTED: Sus scrofa protein FAM48A-like (LOC100524950), mRNA /cds=p(231,2570) /gb=XM_003130935 /gi=311266150 /ug=Ssc.6668 /len=2914"	GO:0000123//histone acetyltransferase complex	GO:0005488//binding	GO:0007275//multicellular organismal development	gi|311266151|ref|XP_003130983.1|/0/PREDICTED: protein FAM48A-like [Sus scrofa]
gnl|UG|Ssc#S55323182	27	7.77	3	0.86	11	3.31	"Sus scrofa mRNA, clone:SPL010093C06, expressed in spleen /gb=AK350560 /gi=288781690 /ug=Ssc.49951 /len=1782"	-	GO:0019787//small conjugating protein ligase activity;GO:0032559	GO:0019941//modification-dependent protein catabolic process;GO:0000209//protein polyubiquitination	"gi|198443360|pdb|3EB6|B/4.93088e-84/Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b"
gnl|UG|Ssc#S55319942	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:THY010091H02, expressed in thymus /gb=AK351823 /gi=288784942 /ug=Ssc.14480 /len=2508"	GO:0031981//nuclear lumen;GO:0030139//endocytic vesicle;GO:0042383//sarcolemma;GO:0043234//protein complex;GO:0045202//synapse	GO:0005515//protein binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0006941//striated muscle contraction;GO:0007267//cell-cell signaling;GO:0008283//cell proliferation;GO:0019221//cytokine-mediated signaling pathway;GO:0006468//protein phosphorylation;GO:0070838//divalent metal ion transport;GO:0006950//response to stress;GO:0016049//cell growth;GO:0000086//G2/M transition of mitotic cell cycle;GO:0006875//cellular metal ion homeostasis	"gi|119626705|gb|EAX06300.1|/0/calcium/calmodulin-dependent protein kinase (CaM kinase) II delta, isoform CRA_e [Homo sapiens]"
gnl|UG|Ssc#S35170884	8	2.3	0	0	5	1.5	"Sus scrofa mRNA, clone:OVRM10072C03, expressed in ovary /gb=AK235358 /gi=115548955 /ug=Ssc.6371 /len=2565"	GO:0044464//cell part	GO:0008092//cytoskeletal protein binding;GO:0046872//metal ion binding	-	gi|208436700|gb|ACI28907.1|/2.14574e-78/prion protein [Sus scrofa]
gnl|UG|Ssc#S35169631	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10104C01, expressed in ovary /gb=AK235687 /gi=115550208 /ug=Ssc.45408 /len=1478"	GO:0016020//membrane	-	-	gi|149642845|ref|NP_001092445.1|/9.59409e-75/transmembrane protein 51 [Bos taurus]
gnl|UG|Ssc#S23762247	9	2.59	4	1.14	9	2.7	"1119830 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN119866 /gi=59814127 /ug=Ssc.81424 /len=876"	-	-	-	-
gnl|UG|Ssc#S40053116	0	0	4	1.14	6	1.8	"rese39c_n16.y1 ese Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW148023 /gi=182582589 /ug=Ssc.91259 /len=616"	GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|293344955|ref|XP_002725885.1|/3.11733e-24/PREDICTED: mCG146274-like [Rattus norvegicus]
gnl|UG|Ssc#S18380343	0	0	0	0	2	0.6	"930730 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK460452 /gi=40831733 /ug=Ssc.47542 /len=875"	-	-	-	-
gnl|UG|Ssc#S55326844	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVR010101F06, expressed in ovary /gb=AK347807 /gi=288777982 /ug=Ssc.75544 /len=2592"	-	-	-	gi|194207811|ref|XP_001500459.2|/0/PREDICTED: phosphatase and actin regulator 4 [Equus caballus]
gnl|UG|Ssc#S17504953	3	0.86	7	2	3	0.9	"885352 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF792421 /gi=37796982 /ug=Ssc.22377 /len=705"	-	-	-	-
gnl|UG|Ssc#S46877199	4	1.15	0	0	3	0.9	"PREDICTED: Sus scrofa PH and SEC7 domain-containing protein 1-like (LOC100152582), mRNA /cds=p(1,1059) /gb=XM_001925953 /gi=311271768 /ug=Ssc.20064 /len=1645"	GO:0031224//intrinsic to membrane;GO:0044424//intracellular part	GO:0005083//small GTPase regulator activity;GO:0060089;GO:0015216	GO:0030154//cell differentiation;GO:0006863//purine base transport;GO:0032011//ARF protein signal transduction	gi|311271769|ref|XP_001925988.2|/2.15989e-171/PREDICTED: PH and SEC7 domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58303929	3	0.86	2	0.57	3	0.9	"PREDICTED: Sus scrofa zinc finger protein ZIC 4-like (LOC100519623), mRNA /cds=p(1,1158) /gb=XM_003132468 /gi=311269503 /ug=Ssc.71679 /len=1775"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311269504|ref|XP_003132516.1|/0/PREDICTED: LOW QUALITY PROTEIN: zinc finger protein ZIC 4-like [Sus scrofa]
gnl|UG|Ssc#S55318319	5	1.44	5	1.43	8	2.4	"Sus scrofa mRNA, clone:MLN010097G11, expressed in mesenteric lymph nodes /gb=AK347047 /gi=288786565 /ug=Ssc.89394 /len=1137"	GO:0005626//insoluble fraction;GO:0032991//macromolecular complex;GO:0030133//transport vesicle;GO:0044459//plasma membrane part;GO:0042383//sarcolemma;GO:0005783//endoplasmic reticulum	GO:0051018//protein kinase A binding;GO:0019900//kinase binding;GO:0003824//catalytic activity;GO:0032559	GO:0006810//transport;GO:0044260;GO:0010627//regulation of intracellular protein kinase cascade;GO:0033036	gi|194373945|dbj|BAG62285.1|/9.47143e-122/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S58310703	26	7.49	16	4.57	6	1.8	"PREDICTED: Sus scrofa myocyte enhancer factor 2D (MEF2D), mRNA /cds=p(137,2326) /gb=XM_003125698 /gi=311254106 /ug=Ssc.18367 /len=2326"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	"GO:0001503//ossification;GO:0030154//cell differentiation;GO:0048513//organ development;GO:0006351//transcription, DNA-dependent"	gi|311254107|ref|XP_003125746.1|/0/PREDICTED: myocyte-specific enhancer factor 2D [Sus scrofa]
gnl|UG|Ssc#S19542298	101	29.08	63	18.01	106	31.86	"947181 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158394 /gi=46172824 /ug=Ssc.15243 /len=683"	-	-	-	-
gnl|UG|Ssc#S40098310	192	55.28	96	27.44	93	27.95	"rpfco0109_n12.y1 fco Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW193217 /gi=182524972 /ug=Ssc.86349 /len=502"	-	-	-	-
gnl|UG|Ssc#S35167344	2	0.58	3	0.86	2	0.6	"Sus scrofa mRNA, clone:OVRM10188G11, expressed in ovary /gb=AK236400 /gi=115552395 /ug=Ssc.54157 /len=2751"	GO:0016021//integral to membrane;GO:0000323//lytic vacuole;GO:0009986//cell surface;GO:0034358//plasma lipoprotein particle;GO:0005768//endosome;GO:0030665//clathrin coated vesicle membrane;GO:0044459//plasma membrane part	GO:0030228//lipoprotein particle receptor activity;GO:0030169//low-density lipoprotein particle binding;GO:0046872//metal ion binding	GO:0016125//sterol metabolic process;GO:0034381//plasma lipoprotein particle clearance;GO:0042157//lipoprotein metabolic process;GO:0030301//cholesterol transport;GO:0006897//endocytosis;GO:0009725//response to hormone stimulus;GO:0055092//sterol homeostasis	gi|54036090|sp|Q28832.2|LDLR_PIG/0/RecName: Full=Low-density lipoprotein receptor; Short=LDL receptor
gnl|UG|Ssc#S20458032	2	0.58	0	0	2	0.6	"UMC-pgvo2-003-g06 Germinal-Vesicle-Oocyte pgvo Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN031680 /gi=48726216 /ug=Ssc.85435 /len=219"	-	-	-	"gi|149068275|gb|EDM17827.1|/3.74532e-14/ubiquitin specific protease 47 (predicted), isoform CRA_d [Rattus norvegicus]"
gnl|UG|Ssc#S35167598	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:THY010094A09, expressed in thymus /gb=AK239334 /gi=115552141 /ug=Ssc.45369 /len=1437"	GO:0016020//membrane	-	-	gi|157427922|ref|NP_001098868.1|/1.8046e-70/cytochrome b-561 domain containing 1 [Bos taurus]
gnl|UG|Ssc#S20116167	15	4.32	20	5.72	53	15.93	"Sus scrofa caveolin 1, caveolae protein, 22kDa (CAV1), mRNA /cds=p(113,649) /gb=NM_214438 /gi=112181313 /ug=Ssc.12842 /len=2613"	GO:0032991//macromolecular complex;GO:0012505//endomembrane system;GO:0042995//cell projection;GO:0001669//acrosomal vesicle;GO:0016021//integral to membrane;GO:0005624//membrane fraction;GO:0005924//cell-substrate adherens junction	GO:0032934//sterol binding;GO:0000149//SNARE binding;GO:0008047//enzyme activator activity;GO:0019899//enzyme binding	GO:0033483;GO:0045185//maintenance of protein location;GO:0051704;GO:0001935//endothelial cell proliferation;GO:0045767//regulation of anti-apoptosis;GO:0030177//positive regulation of Wnt receptor signaling pathway;GO:0006639//acylglycerol metabolic process;GO:0042506//tyrosine phosphorylation of Stat5 protein;GO:0019229//regulation of vasoconstriction;GO:0043405//regulation of MAP kinase activity;GO:0048732//gland development;GO:0014706//striated muscle tissue development;GO:0055092//sterol homeostasis;GO:0042391//regulation of membrane potential;GO:0007596//blood coagulation;GO:0006937//regulation of muscle contraction;GO:0010522;GO:0031960//response to corticosteroid stimulus;GO:0001933//negative regulation of protein phosphorylation;GO:0030301//cholesterol transport;GO:0007589//body fluid secretion;GO:0006898//receptor-mediated endocytosis;GO:0001934//positive regulation of protein phosphorylation;GO:0030509//BMP signaling pathway;GO:0048771//tissue remodeling;GO:0010212//response to ionizing radiation;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0031112;GO:0043393//regulation of protein binding;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0001959//regulation of cytokine-mediated signaling pathway;GO:0010038//response to metal ion;GO:0010741;GO:0030855//epithelial cell differentiation;GO:0032768;GO:0030100//regulation of endocytosis;GO:0001765;GO:0051259//protein oligomerization;GO:0000165//MAPKKK cascade;GO:0031669//cellular response to nutrient levels;GO:0031294;GO:0051345//positive regulation of hydrolase activity;GO:0006631//fatty acid metabolic process	gi|47523930|ref|NP_999603.1|/1.19371e-100/caveolin-1 [Sus scrofa]
gnl|UG|Ssc#S35165414	178	51.25	376	107.48	203	61.01	"Sus scrofa mRNA, clone:UTR010031C11, expressed in uterus /gb=AK240107 /gi=115554312 /ug=Ssc.3028 /len=1371"	-	-	-	-
gnl|UG|Ssc#S58309052	80	23.03	53	15.15	98	29.45	"PREDICTED: Sus scrofa mediator of RNA polymerase II transcription subunit 25-like (LOC100519902), mRNA /cds=p(15,2255) /gb=XM_003127336 /gi=311257995 /ug=Ssc.37448 /len=2289"	GO:0031981//nuclear lumen	-	GO:0010467//gene expression	"gi|119572934|gb|EAW52549.1|/0/mediator of RNA polymerase II transcription, subunit 25 homolog (yeast), isoform CRA_f [Homo sapiens]"
gnl|UG|Ssc#S46880192	0	0	3	0.86	3	0.9	"PREDICTED: Sus scrofa hypothetical protein LOC100158120 (LOC100158120), mRNA /cds=p(1,1302) /gb=XM_001927559 /gi=311254752 /ug=Ssc.22205 /len=1302"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|311254753|ref|XP_001927594.2|/0/PREDICTED: hypothetical protein LOC100158120 [Sus scrofa]
gnl|UG|Ssc#S58308404	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa zinc finger, FYVE domain containing 9 (ZFYVE9), mRNA /cds=p(145,4413) /gb=XM_003127989 /gi=311259319 /ug=Ssc.43164 /len=4413"	GO:0005769//early endosome	GO:0070011;GO:0004871//signal transducer activity;GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0016192//vesicle-mediated transport;GO:0006606//protein import into nucleus;GO:0007179//transforming growth factor beta receptor signaling pathway	gi|311259320|ref|XP_003128037.1|/0/PREDICTED: zinc finger FYVE domain-containing protein 9-like [Sus scrofa]
gnl|UG|Ssc#S55321371	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:THY010001A11, expressed in thymus /gb=AK351385 /gi=288783501 /ug=Ssc.1282 /len=1803"	GO:0043231//intracellular membrane-bounded organelle	GO:0016791//phosphatase activity;GO:0005488//binding	GO:0044238//primary metabolic process;GO:0006796//phosphate metabolic process	gi|311254447|ref|XP_001928381.2|/0/PREDICTED: lysophosphatidic acid phosphatase type 6 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S34498339	3	0.86	0	0	0	0	"DB815309 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10214E09 /clone_end=3' /gb=DB815309 /gi=112751651 /ug=Ssc.95030 /len=836"	-	-	-	-
gnl|UG|Ssc#S58312739	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa glycoprotein GP36B (GP36B), mRNA /cds=p(59,1138) /gb=XM_003123676 /gi=311249592 /ug=Ssc.2034 /len=1673"	GO:0012505//endomembrane system;GO:0005793//ER-Golgi intermediate compartment;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0030246//carbohydrate binding	GO:0006810//transport	gi|311249593|ref|XP_003123724.1|/0/PREDICTED: vesicular integral-membrane protein VIP36 [Sus scrofa]
gnl|UG|Ssc#S18380119	9	2.59	14	4	8	2.4	"930486 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK460228 /gi=40831509 /ug=Ssc.18123 /len=781"	GO:0031224//intrinsic to membrane	-	-	gi|301771748|ref|XP_002921294.1|/4.51243e-33/PREDICTED: transmembrane and coiled-coil domains protein 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S39971746	143	41.17	75	21.44	174	52.29	"rduo440b_m23.y1 duo Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW066811 /gi=181295138 /ug=Ssc.16681 /len=634"	-	-	-	-
gnl|UG|Ssc#S58301558	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa hypothetical protein LOC100521236 (LOC100521236), mRNA /cds=p(58,2694) /gb=XM_003134850 /gi=311275735 /ug=Ssc.15812 /len=4043"	-	-	-	-
gnl|UG|Ssc#S18354391	5	1.44	18	5.15	0	0	"893425 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK449832 /gi=40797046 /ug=Ssc.22530 /len=746"	-	-	-	-
gnl|UG|Ssc#S46876909	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa HEAT repeat containing 1 (HEATR1), mRNA /cds=p(108,6572) /gb=XM_001925190 /gi=194042530 /ug=Ssc.18908 /len=6814"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0042254//ribosome biogenesis	gi|194042531|ref|XP_001925225.1|/0/PREDICTED: HEAT repeat-containing protein 1 [Sus scrofa]
gnl|UG|Ssc#S34497666	2	0.58	6	1.72	4	1.2	"DB814599 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10171C05 /clone_end=3' /gb=DB814599 /gi=112745785 /ug=Ssc.55757 /len=737"	GO:0044424//intracellular part;GO:0031224//intrinsic to membrane	-	-	gi|213972537|ref|NP_001094356.1|/8.91142e-65/membralin [Rattus norvegicus]
gnl|UG|Ssc#S46878348	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa aryl-hydrocarbon receptor nuclear translocator 2 (ARNT2), mRNA /cds=p(1,2121) /gb=XM_001926072 /gi=311260628 /ug=Ssc.3779 /len=2121"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0003676//nucleic acid binding;GO:0060089;GO:0001071//nucleic acid binding transcription factor activity;GO:0005102//receptor binding;GO:0046983//protein dimerization activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006915//apoptosis;GO:0043627//response to estrogen stimulus;GO:0043009//chordate embryonic development;GO:0023052//signaling;GO:0007399//nervous system development;GO:0008283//cell proliferation;GO:0006950//response to stress	gi|311260629|ref|XP_001926107.2|/0/PREDICTED: aryl hydrocarbon receptor nuclear translocator 2-like [Sus scrofa]
gnl|UG|Ssc#S35165263	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10155E03, expressed in liver /gb=AK233473 /gi=115554463 /ug=Ssc.3196 /len=1827"	-	-	-	-
gnl|UG|Ssc#S46876004	23	6.62	61	17.44	27	8.11	"PREDICTED: Sus scrofa transglutaminase 6 (TGM6), mRNA /cds=p(1,771) /gb=XM_001924859 /gi=311274579 /ug=Ssc.90149 /len=912"	GO:0009898//internal side of plasma membrane;GO:0005856//cytoskeleton	"GO:0017111//nucleoside-triphosphatase activity;GO:0016755;GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups;GO:0046872//metal ion binding;GO:0032561"	GO:0051259//protein oligomerization;GO:0030216//keratinocyte differentiation;GO:0045229//external encapsulating structure organization;GO:0009207;GO:0001942//hair follicle development;GO:0006464//protein modification process	gi|311274580|ref|XP_001924894.2|/1.4693e-124/PREDICTED: protein-glutamine gamma-glutamyltransferase E [Sus scrofa]
gnl|UG|Ssc#S55323780	3	0.86	0	0	4	1.2	"Sus scrofa mRNA, clone:SPL010017F05, expressed in spleen /gb=AK350231 /gi=288781092 /ug=Ssc.38419 /len=1981"	GO:0044464//cell part	-	-	gi|311266446|ref|XP_003131094.1|/4.36565e-20/PREDICTED: integral membrane protein GPR180-like [Sus scrofa]
gnl|UG|Ssc#S40414470	137	39.44	18	5.15	126	37.87	"rplac_13120.y1 pla Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW509077 /gi=183080916 /ug=Ssc.46865 /len=554"	-	-	-	gi|300872546|gb|ADK39026.1|/5.94231e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S58307451	6	1.73	14	4	8	2.4	"PREDICTED: Sus scrofa glutaredoxin domain-containing cysteine-rich protein 1-like (LOC100515559), mRNA /cds=p(1,873) /gb=XM_003128946 /gi=311262056 /ug=Ssc.95742 /len=873"	GO:0005902//microvillus;GO:0031513//nonmotile primary cilium	GO:0015036//disulfide oxidoreductase activity	GO:0050954//sensory perception of mechanical stimulus;GO:0030030//cell projection organization;GO:0019725//cellular homeostasis;GO:0009887//organ morphogenesis;GO:0060119//inner ear receptor cell development	gi|311262057|ref|XP_003128994.1|/3.42054e-168/PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35165864	19	5.47	0	0	10	3.01	"Sus scrofa mRNA, clone:PBL010029A10, expressed in periphral blood mononuclear cell /gb=AK236867 /gi=115553862 /ug=Ssc.30679 /len=1737"	GO:0016020//membrane;GO:0031981//nuclear lumen	-	GO:0050953//sensory perception of light stimulus	gi|301771906|ref|XP_002921373.1|/1.65382e-161/PREDICTED: kelch-like protein 7-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58313454	0	0	0	0	0	0	"PREDICTED: Sus scrofa otogelin (OTOG), mRNA /cds=p(1,8739) /gb=XM_003122956 /gi=311248140 /ug=Ssc.78781 /len=8739"	GO:0031012//extracellular matrix;GO:0044444//cytoplasmic part;GO:0016020//membrane	"GO:0004553//hydrolase activity, hydrolyzing O-glycosyl compounds"	GO:0007599//hemostasis;GO:0019566//arabinose metabolic process;GO:0050954//sensory perception of mechanical stimulus;GO:0007626//locomotory behavior	gi|311248141|ref|XP_003123004.1|/0/PREDICTED: otogelin-like [Sus scrofa]
gnl|UG|Ssc#S46876539	113	32.53	227	64.89	63	18.93	"PREDICTED: Sus scrofa 14-3-3 protein eta (LOC100155504), mRNA /cds=p(328,1068) /gb=XM_001928076 /gi=311270980 /ug=Ssc.6924 /len=1874"	GO:0044424//intracellular part	GO:0030528//transcription regulator activity;GO:0016491//oxidoreductase activity;GO:0008092//cytoskeletal protein binding;GO:0035258//steroid hormone receptor binding	GO:0006584//catecholamine metabolic process;GO:0015031//protein transport;GO:0050767//regulation of neurogenesis;GO:0007067//mitosis;GO:0006915//apoptosis;GO:0008208;GO:0050804//regulation of synaptic transmission;GO:0031345//negative regulation of cell projection organization;GO:0031958	gi|6756037|ref|NP_035868.1|/2.91768e-135/14-3-3 protein eta [Mus musculus]
gnl|UG|Ssc#S55326499	5	1.44	8	2.29	7	2.1	"Sus scrofa mRNA, clone:OVRM10081D05, expressed in ovary /gb=AK348152 /gi=288778327 /ug=Ssc.2611 /len=2466"	GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|77735605|ref|NP_001029498.1|/0/nucleolar complex protein 2 homolog [Bos taurus]
gnl|UG|Ssc#S58308641	2	0.58	7	2	0	0	"PREDICTED: Sus scrofa collagen alpha-1(XVI) chain-like (LOC100518132), mRNA /cds=p(1,4857) /gb=XM_003127753 /gi=311258833 /ug=Ssc.25168 /len=5032"	-	-	-	gi|311258834|ref|XP_003127801.1|/0/PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XVI) chain-like [Sus scrofa]
gnl|UG|Ssc#S58312314	5	1.44	0	0	3	0.9	"PREDICTED: Sus scrofa prenylcysteine oxidase-like (LOC100513977), mRNA /cds=p(19,1497) /gb=XM_003124085 /gi=311250466 /ug=Ssc.18200 /len=2469"	-	"GO:0016667//oxidoreductase activity, acting on a sulfur group of donors"	GO:0030329//prenylcysteine metabolic process	gi|311250467|ref|XP_003124133.1|/0/PREDICTED: prenylcysteine oxidase-like [Sus scrofa]
gnl|UG|Ssc#S58306963	6	1.73	5	1.43	4	1.2	"PREDICTED: Sus scrofa tripartite motif-containing protein 3-like (LOC100518797), mRNA /cds=p(142,2043) /gb=XM_003129459 /gi=311263053 /ug=Ssc.15632 /len=2456"	-	-	-	-
gnl|UG|Ssc#S55305313	0	0	0	0	3	0.9	"FS704286 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010094E12 5', mRNA sequence /clone=PST010094E12 /clone_end=5' /gb=FS704286 /gi=288307616 /ug=Ssc.51135 /len=917"	-	GO:0004672//protein kinase activity;GO:0030695//GTPase regulator activity;GO:0032559	GO:0000165//MAPKKK cascade;GO:0006464//protein modification process	gi|114577097|ref|XP_515427.2|/1.73742e-141/PREDICTED: mitogen-activated protein kinase kinase kinase kinase 3 [Pan troglodytes]
gnl|UG|Ssc#S58311557	18	5.18	5	1.43	16	4.81	"PREDICTED: Sus scrofa stAR-related lipid transfer protein 7, mitochondrial-like (LOC100525865), mRNA /cds=p(1,1143) /gb=XM_003124844 /gi=311252023 /ug=Ssc.12763 /len=2863"	GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|311252024|ref|XP_003124892.1|/0/PREDICTED: stAR-related lipid transfer protein 7, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S20174064	0	0	0	0	4	1.2	"Sus scrofa poliovirus receptor-related 1 (herpesvirus entry mediator C) (PVRL1), mRNA /cds=p(1,1548) /gb=NM_001001262 /gi=47575831 /ug=Ssc.15891 /len=1548"	-	-	-	-
gnl|UG|Ssc#S55324695	5	1.44	2	0.57	4	1.2	"Sus scrofa mRNA, clone:ADR010049H07, expressed in adrenal gland /gb=AK343361 /gi=288780177 /ug=Ssc.11093 /len=2490"	GO:0005764//lysosome;GO:0005774//vacuolar membrane;GO:0005770//late endosome;GO:0030141//stored secretory granule	GO:0019905//syntaxin binding	GO:0006887//exocytosis;GO:0016044//cellular membrane organization;GO:0051875//pigment granule localization;GO:0033363//secretory granule organization	gi|114053331|ref|NP_001039749.1|/0/vacuolar protein sorting-associated protein 33B [Bos taurus]
gnl|UG|Ssc#S35173518	9	2.59	2	0.57	7	2.1	"Sus scrofa mRNA, clone:AMP010050G04, expressed in alveolar macrophage /gb=AK230836 /gi=115546317 /ug=Ssc.22097 /len=2036"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0043169//cation binding;GO:0004721//phosphoprotein phosphatase activity	GO:0009314//response to radiation;GO:0006470//protein dephosphorylation;GO:0006282//regulation of DNA repair;GO:0050953//sensory perception of light stimulus;GO:0006325//chromatin organization;GO:0032502//developmental process	gi|194207817|ref|XP_001500512.2|/0/PREDICTED: eyes absent homolog 3 (Drosophila) [Equus caballus]
gnl|UG|Ssc#S58305641	12	3.45	3	0.86	23	6.91	"PREDICTED: Sus scrofa acyl-CoA binding domain containing 5 (ACBD5), mRNA /cds=p(114,1685) /gb=XM_003130754 /gi=311265750 /ug=Ssc.27422 /len=3705"	GO:0031224//intrinsic to membrane	GO:0005504//fatty acid binding	GO:0051234//establishment of localization	gi|311265751|ref|XP_003130802.1|/0/PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Sus scrofa]
gnl|UG|Ssc#S26712679	0	0	3	0.86	3	0.9	"AJ948763 KN404_1 Sus scrofa cDNA clone C0007739l24 3', mRNA sequence /clone=C0007739l24 /clone_end=3' /gb=AJ948763 /gi=74365579 /ug=Ssc.8666 /len=760"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|301784677|ref|XP_002927750.1|/8.83985e-87/PREDICTED: protein IWS1 homolog [Ailuropoda melanoleuca]
gnl|UG|Ssc#S18335428	0	0	0	0	0	0	"BP462675 full-length enriched swine cDNA library, adult uterus Sus scrofa cDNA clone UTR010068A01 5', mRNA sequence /clone=UTR010068A01 /clone_end=5' /gb=BP462675 /gi=40480623 /ug=Ssc.40007 /len=826"	-	-	-	-
gnl|UG|Ssc#S31127949	59	16.99	21	6	47	14.12	"1556552 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY431787 /gi=87233090 /ug=Ssc.19390 /len=670"	-	-	-	-
gnl|UG|Ssc#S58306268	12	3.45	11	3.14	3	0.9	"PREDICTED: Sus scrofa uncharacterized protein C7orf63-like (LOC100515790), mRNA /cds=p(271,4491) /gb=XM_003130129 /gi=311264459 /ug=Ssc.10636 /len=4629"	-	-	-	gi|311264460|ref|XP_003130177.1|/0/PREDICTED: uncharacterized protein C7orf63-like [Sus scrofa]
gnl|UG|Ssc#S18377592	0	0	2	0.57	0	0	"921662 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK457369 /gi=40828650 /ug=Ssc.24485 /len=872"	GO:0043231//intracellular membrane-bounded organelle	"GO:0003676//nucleic acid binding;GO:0042393//histone binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0048037//cofactor binding"	GO:0006007//glucose catabolic process	gi|73959012|ref|XP_864107.1|/4.06483e-12/PREDICTED: similar to cytokine-like nuclear factor n-pac isoform 6 [Canis familiaris]
gnl|UG|Ssc#S17526319	0	0	2	0.57	2	0.6	"BX675519 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0031.j.07 3prim, mRNA sequence /clone=scac0031.j.07 /clone_end=3' /gb=BX675519 /gi=117784311 /ug=Ssc.57553 /len=855"	GO:0031224//intrinsic to membrane;GO:0033267//axon part;GO:0044424//intracellular part	GO:0005488//binding;GO:0016247//channel regulator activity;GO:0003824//catalytic activity;GO:0005267//potassium channel activity	GO:0051259//protein oligomerization;GO:0008152//metabolic process;GO:0034220//ion transmembrane transport;GO:0030001//metal ion transport	"gi|73956647|ref|XP_858412.1|/5.88136e-106/PREDICTED: similar to potassium voltage-gated channel, shaker-related subfamily, beta member 2 isoform 2 isoform 8 [Canis familiaris]"
gnl|UG|Ssc#S31100842	2	0.58	0	0	0	0	"1496038 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY404680 /gi=87205983 /ug=Ssc.88993 /len=753"	-	-	-	-
gnl|UG|Ssc#S58309954	136	39.16	114	32.59	155	46.58	"PREDICTED: Sus scrofa zinc finger protein AEBP2-like (LOC100522805), mRNA /cds=p(21,1565) /gb=XM_003126446 /gi=311256078 /ug=Ssc.3647 /len=3099"	GO:0031519//PcG protein complex	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	"GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|311256079|ref|XP_003126494.1|/4.25607e-169/PREDICTED: zinc finger protein AEBP2-like [Sus scrofa]
gnl|UG|Ssc#S40553743	63	18.14	9	2.57	48	14.43	"rthg13_p19.y1 thg Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW640456 /gi=183044303 /ug=Ssc.55638 /len=688"	-	-	GO:0044260;GO:0090304	"gi|119627829|gb|EAX07424.1|/2.30091e-24/splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), isoform CRA_d [Homo sapiens]"
gnl|UG|Ssc#S46880270	31	8.93	138	39.45	25	7.51	"PREDICTED: Sus scrofa PHD finger protein 20-like 1 (PHF20L1), mRNA /cds=p(130,3240) /gb=XM_001929311 /gi=311253351 /ug=Ssc.20849 /len=5239"	-	GO:0046914//transition metal ion binding	-	gi|311253352|ref|XP_001929346.2|/0/PREDICTED: tudor domain-containing protein PHF20L1-like [Sus scrofa]
gnl|UG|Ssc#S55324486	23	6.62	0	0	18	5.41	"Sus scrofa mRNA, clone:SKNB10090C12, expressed in skin /gb=AK349920 /gi=288780386 /ug=Ssc.1191 /len=1960"	-	GO:0046872//metal ion binding;GO:0005543//phospholipid binding	GO:0007599//hemostasis	gi|194042330|ref|XP_001929150.1|/1.16106e-174/PREDICTED: annexin A8-like [Sus scrofa]
gnl|UG|Ssc#S55324794	10	2.88	7	2	17	5.11	"Sus scrofa mRNA, clone:SKNB10060C06, expressed in skin /gb=AK349813 /gi=288780078 /ug=Ssc.95243 /len=1816"	-	-	-	gi|194215311|ref|XP_001915986.1|/0/PREDICTED: similar to suprabasin [Equus caballus]
gnl|UG|Ssc#S46881178	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa uncharacterized protein C9orf117-like (LOC100155942), partial mRNA /cds=p(42,1190) /gb=XM_001924850 /gi=311246479 /ug=Ssc.71869 /len=1190"	-	-	-	"gi|311246480|ref|XP_001924885.2|/2.63717e-170/PREDICTED: uncharacterized protein C9orf117-like, partial [Sus scrofa]"
gnl|UG|Ssc#S29979787	40	11.52	20	5.72	18	5.41	"PDUts1152A12 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1152A12 5', mRNA sequence /clone=PDUts1152A12 /clone_end=5' /gb=CV876445 /gi=84130405 /ug=Ssc.34122 /len=247"	-	-	-	-
gnl|UG|Ssc#S46876822	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa nuclear receptor-binding factor 2-like (LOC100157738), mRNA /cds=p(151,1014) /gb=XM_001925540 /gi=311271256 /ug=Ssc.22460 /len=2473"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0004871//signal transducer activity;GO:0005102//receptor binding	GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|311271257|ref|XP_001925575.2|/1.44087e-148/PREDICTED: nuclear receptor-binding factor 2-like [Sus scrofa]
gnl|UG|Ssc#S55326649	0	0	4	1.14	0	0	"Sus scrofa mRNA, clone:OVRM10039C07, expressed in ovary /gb=AK348002 /gi=288778177 /ug=Ssc.42317 /len=1776"	-	-	-	gi|194039658|ref|XP_001926126.1|/4.12723e-107/PREDICTED: UPF0552 protein C15orf38 homolog [Sus scrofa]
gnl|UG|Ssc#S58305196	0	0	12	3.43	14	4.21	"PREDICTED: Sus scrofa galactokinase-like (LOC100521514), mRNA /cds=p(85,1263) /gb=XM_003131193 /gi=311266780 /ug=Ssc.21642 /len=1327"	GO:0044444//cytoplasmic part;GO:0005626//insoluble fraction	"GO:0048029//monosaccharide binding;GO:0016773//phosphotransferase activity, alcohol group as acceptor;GO:0032559"	GO:0006059//hexitol metabolic process;GO:0016310//phosphorylation;GO:0006012//galactose metabolic process	gi|311266781|ref|XP_003131241.1|/0/PREDICTED: galactokinase-like [Sus scrofa]
gnl|UG|Ssc#S58314173	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa formin-binding protein 1-like (LOC100521424), mRNA /cds=p(1,1527) /gb=XM_003122230 /gi=311246622 /ug=Ssc.27982 /len=2045"	GO:0000323//lytic vacuole;GO:0043232;GO:0016020//membrane;GO:0031410//cytoplasmic vesicle	GO:0005515//protein binding	GO:0048731;GO:0016192//vesicle-mediated transport	gi|311246623|ref|XP_003122278.1|/0/PREDICTED: formin-binding protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58310696	16	4.61	2	0.57	6	1.8	"PREDICTED: Sus scrofa ubiquilin-4-like (LOC100519020), mRNA /cds=p(1,1806) /gb=XM_003125701 /gi=311254131 /ug=Ssc.13768 /len=3528"	GO:0044444//cytoplasmic part;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	-	gi|311254132|ref|XP_003125749.1|/2.62047e-154/PREDICTED: LOW QUALITY PROTEIN: ubiquilin-4-like [Sus scrofa]
gnl|UG|Ssc#S58312583	2	0.58	3	0.86	5	1.5	"PREDICTED: Sus scrofa F-box and leucine-rich repeat protein 17 (FBXL17), mRNA /cds=p(351,2456) /gb=XM_003123817 /gi=311249914 /ug=Ssc.92888 /len=2755"	-	-	-	gi|311249915|ref|XP_003123865.1|/0/PREDICTED: f-box/LRR-repeat protein 17-like [Sus scrofa]
gnl|UG|Ssc#S6063793	26	7.49	22	6.29	25	7.51	"MI-P-AY1-nqf-e-09-0-UI.s1 MI-P-AY1 Sus scrofa cDNA clone MI-P-AY1-nqf-e-09-0-UI 3', mRNA sequence /clone=MI-P-AY1-nqf-e-09-0-UI /clone_end=3' /gb=BI400619 /gi=15179680 /ug=Ssc.81668 /len=535"	-	-	-	-
gnl|UG|Ssc#S6054462	7	2.02	6	1.72	2	0.6	"MI-P-E3-agv-h-01-1-UM.s1 MI-P-E3 Sus scrofa cDNA clone MI-P-E3-agv-h-01-1-UM 3', mRNA sequence /clone=MI-P-E3-agv-h-01-1-UM /clone_end=3' /gb=BQ598525 /gi=21545251 /ug=Ssc.61411 /len=537"	-	GO:0016831//carboxy-lyase activity	GO:0006596//polyamine biosynthetic process	gi|148672948|gb|EDL04895.1|/8.42053e-32/mCG120650 [Mus musculus]
gnl|UG|Ssc#S43134858	671	193.18	810	231.54	678	203.76	"Sus scrofa beta-enolase 3 transcript variant 1 (ENO3) mRNA, complete cds, alternatively spliced /cds=p(197,1501) /gb=EU418439 /gi=167859937 /ug=Ssc.10942 /len=1579"	GO:0005626//insoluble fraction;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0042802//identical protein binding;GO:0046983//protein dimerization activity;GO:0016836//hydro-lyase activity	GO:0006007//glucose catabolic process;GO:0042221//response to chemical stimulus;GO:0042246//tissue regeneration	gi|113205498|ref|NP_001037992.1|/0/beta-enolase [Sus scrofa]
gnl|UG|Ssc#S20937784	3	0.86	6	1.72	7	2.1	"AJ649507 CSEQRAN19 Sus scrofa cDNA clone C0003272_K21, mRNA sequence /clone=C0003272_K21 /gb=AJ649507 /gi=49326352 /ug=Ssc.85605 /len=555"	GO:0044429//mitochondrial part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|157820403|ref|NP_001100113.1|/2.20631e-102/probable arginyl-tRNA synthetase, mitochondrial [Rattus norvegicus]"
gnl|UG|Ssc#S58308555	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa myomesin 1, 185kDa (MYOM1), mRNA /cds=p(1,4968) /gb=XM_003127844 /gi=311259009 /ug=Ssc.19335 /len=5428"	GO:0031672//A band;GO:0005859//muscle myosin complex	GO:0005198//structural molecule activity	GO:0003012//muscle system process	gi|311259010|ref|XP_003127892.1|/0/PREDICTED: myomesin-1-like [Sus scrofa]
gnl|UG|Ssc#S29976743	0	0	2	0.57	2	0.6	"PDUts1114C02 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1114C02 5' similar to homologue to ref|XM_340811.1| Rattus norvegicus similar to RIKEN cDNA 4933439F18 (LOC360538), mRNA, mRNA sequence /clone=PDUts1114C02 /clone_end=5' /gb=CV873401 /gi=84127361 /ug=Ssc.55370 /len=703"	-	-	-	gi|74268088|gb|AAI02716.1|/1.98557e-87/C19H17ORF39 protein [Bos taurus]
gnl|UG|Ssc#S20116792	53	15.26	10	2.86	31	9.32	"Sus scrofa progesterone receptor membrane component 1 (PGRMC1), mRNA /cds=p(42,626) /gb=NM_213911 /gi=47522661 /ug=Ssc.9819 /len=1893"	GO:0031981//nuclear lumen;GO:0031090//organelle membrane;GO:0042598//vesicular fraction;GO:0005887//integral to plasma membrane	GO:0008289//lipid binding;GO:0005126//cytokine receptor binding;GO:0004896//cytokine receptor activity;GO:0005506//iron ion binding	GO:0006935//chemotaxis;GO:0023052//signaling	gi|47522662|ref|NP_999076.1|/6.24483e-85/membrane-associated progesterone receptor component 1 [Sus scrofa]
gnl|UG|Ssc#S35166558	33	9.5	27	7.72	15	4.51	"Sus scrofa mRNA, clone:LVRM10061G11, expressed in liver /gb=AK232979 /gi=115553181 /ug=Ssc.23806 /len=1521"	GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|311251980|ref|XP_003124867.1|/0/PREDICTED: 28S ribosomal protein S5, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S46876829	8	2.3	0	0	5	1.5	"PREDICTED: Sus scrofa Rho-related BTB domain containing 1 (RHOBTB1), mRNA /cds=p(262,2358) /gb=XM_001925241 /gi=194042698 /ug=Ssc.94059 /len=2358"	GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0032561	GO:0035556//intracellular signal transduction;GO:0009966//regulation of signal transduction	gi|194042699|ref|XP_001925276.1|/0/PREDICTED: rho-related BTB domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58302904	1301	374.56	1609	459.93	762	229	"PREDICTED: Sus scrofa ATP synthase lipid-binding protein, mitochondrial-like (LOC100513629), mRNA /cds=p(1,810) /gb=XM_003133492 /gi=311272671 /ug=Ssc.53775 /len=1185"	"GO:0031224//intrinsic to membrane;GO:0033177//proton-transporting two-sector ATPase complex, proton-transporting domain;GO:0005743//mitochondrial inner membrane"	GO:0015078//hydrogen ion transmembrane transporter activity;GO:0005488//binding	"GO:0006754//ATP biosynthetic process;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0032502//developmental process;GO:0010033//response to organic substance"	"gi|311272672|ref|XP_003133540.1|/9.45318e-128/PREDICTED: ATP synthase lipid-binding protein, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S46876912	19	5.47	12	3.43	15	4.51	"PREDICTED: Sus scrofa ryanodine receptor 2 (cardiac) (RYR2), partial mRNA /cds=p(1,13395) /gb=XM_001924768 /gi=311271121 /ug=Ssc.16180 /len=14737"	-	-	-	-
gnl|UG|Ssc#S55319287	52	14.97	14	4	36	10.82	"Sus scrofa mRNA, clone:LVRM10166D04, expressed in liver /gb=AK346405 /gi=288785597 /ug=Ssc.21847 /len=1553"	GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0042254//ribosome biogenesis	gi|149728839|ref|XP_001494789.1|/0/PREDICTED: similar to U3 small nucleolar RNA-interacting protein 2 (U3 small nucleolar ribonucleoprotein-associated 55 kDa protein) (U3 snoRNP-associated 55 kDa protein) (U3-55K) (RRP9 homolog) [Equus caballus]
gnl|UG|Ssc#S58304587	13	3.74	0	0	2	0.6	"PREDICTED: Sus scrofa RNA methyltransferase like 1 (RNMTL1), mRNA /cds=p(22,1290) /gb=XM_003131810 /gi=311268036 /ug=Ssc.24283 /len=2177"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0008168//methyltransferase activity	GO:0006730//one-carbon metabolic process;GO:0010467//gene expression;GO:0009451//RNA modification	gi|311268037|ref|XP_003131858.1|/0/PREDICTED: RNA methyltransferase-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55323437	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:BKFL10009E07, expressed in back fat /gb=AK344044 /gi=288781435 /ug=Ssc.41409 /len=2200"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0016021//integral to membrane;GO:0030425//dendrite	GO:0019904//protein domain specific binding;GO:0008289//lipid binding;GO:0045125	GO:0007166//cell surface receptor linked signaling pathway;GO:0051094//positive regulation of developmental process;GO:0007266//Rho protein signal transduction;GO:0007204//elevation of cytosolic calcium ion concentration;GO:0010975//regulation of neuron projection development;GO:0010863//positive regulation of phospholipase C activity;GO:0070482;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0030031//cell projection assembly;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0006915//apoptosis;GO:0008366//axon ensheathment;GO:0014911//positive regulation of smooth muscle cell migration;GO:0000165//MAPKKK cascade	gi|57164353|ref|NP_001009332.1|/0/lysophosphatidic acid receptor 1 [Ovis aries]
gnl|UG|Ssc#S34497299	0	0	0	0	2	0.6	"DB808089 full-length enriched swine cDNA library, adult liver Sus scrofa cDNA 3', mRNA sequence /clone=LVR010029G10 /clone_end=3' /gb=DB808089 /gi=112781507 /ug=Ssc.48129 /len=904"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0044431//Golgi apparatus part;GO:0031224//intrinsic to membrane;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity;GO:0005488//binding	GO:0001501//skeletal system development;GO:0035107//appendage morphogenesis;GO:0006518//peptide metabolic process;GO:0001999//renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure;GO:0048513//organ development;GO:0001816//cytokine production;GO:0007154//cell communication;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0003002//regionalization;GO:0019058//viral infectious cycle;GO:0016486//peptide hormone processing;GO:0048565//digestive tract development;GO:0035295//tube development	gi|20336246|ref|NP_006191.2|/8.0945e-158/proprotein convertase subtilisin/kexin type 5 isoform 2 preproprotein [Homo sapiens]
gnl|UG|Ssc#S6075249	55	15.83	25	7.15	53	15.93	"UNL-P-FN-ch-a-07-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-ch-a-07-0-UNL 3', mRNA sequence /clone=UNL-P-FN-ch-a-07-0-UNL /clone_end=3' /gb=BI185038 /gi=14659447 /ug=Ssc.94329 /len=623"	GO:0043231//intracellular membrane-bounded organelle;GO:0015934//large ribosomal subunit	GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0048232//male gamete generation	gi|194228451|ref|XP_001915548.1|/2.17586e-81/PREDICTED: similar to QM protein [Equus caballus]
gnl|UG|Ssc#S46877657	17	4.89	23	6.57	14	4.21	"PREDICTED: Sus scrofa tetratricopeptide repeat domain 14 (TTC14), mRNA /cds=p(159,2477) /gb=XM_001927185 /gi=311269686 /ug=Ssc.42862 /len=3238"	-	GO:0003676//nucleic acid binding	-	gi|311269687|ref|XP_001927220.2|/0/PREDICTED: tetratricopeptide repeat protein 14 [Sus scrofa]
gnl|UG|Ssc#S21557324	0	0	4	1.14	0	0	"UMC-pd20fet-004-e01 Day 20 fetus pd20fet Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO938641 /gi=51305400 /ug=Ssc.86449 /len=167"	-	-	-	-
gnl|UG|Ssc#S58304120	99	28.5	243	69.46	68	20.44	"PREDICTED: Sus scrofa pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like (LOC100516042), mRNA /cds=p(79,1161) /gb=XM_003132277 /gi=311269062 /ug=Ssc.4382 /len=1590"	GO:0043234//protein complex;GO:0044429//mitochondrial part	GO:0004738//pyruvate dehydrogenase activity	GO:0006007//glucose catabolic process;GO:0006086//acetyl-CoA biosynthetic process from pyruvate;GO:0009060//aerobic respiration	"gi|311269063|ref|XP_003132325.1|/0/PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58306757	3	0.86	3	0.86	4	1.2	"PREDICTED: Sus scrofa proteasomal ATPase-associated factor 1-like (LOC100514355), mRNA /cds=p(335,1513) /gb=XM_003129635 /gi=311263466 /ug=Ssc.1269 /len=1893"	GO:0043234//protein complex	GO:0005488//binding	GO:0051704	gi|311263467|ref|XP_003129683.1|/0/PREDICTED: proteasomal ATPase-associated factor 1-like [Sus scrofa]
gnl|UG|Ssc#S46877052	0	0	3	0.86	2	0.6	"PREDICTED: Sus scrofa protein FAM190B-like (LOC100156899), mRNA /cds=p(272,2776) /gb=XM_001927832 /gi=311271459 /ug=Ssc.25082 /len=2776"	-	-	-	gi|194042231|ref|XP_001927867.1|/0/PREDICTED: protein FAM190B-like [Sus scrofa]
gnl|UG|Ssc#S55291517	2	0.58	0	0	3	0.9	"FS647135 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10090D02 5', mRNA sequence /clone=BFLT10090D02 /clone_end=5' /gb=FS647135 /gi=288291203 /ug=Ssc.26344 /len=817"	-	GO:0043169//cation binding;GO:0017016//Ras GTPase binding;GO:0019904//protein domain specific binding;GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process;GO:0032501//multicellular organismal process;GO:0006796//phosphate metabolic process	gi|301769931|ref|XP_002920383.1|/4.73379e-153/PREDICTED: serine/threonine-protein kinase PAK 3-like isoform 4 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20116818	14	4.03	0	0	4	1.2	"Sus scrofa 3-oxoacid CoA transferase 1 (OXCT1), nuclear gene encoding mitochondrial protein, mRNA /cds=p(82,1644) /gb=NM_213938 /gi=47522609 /ug=Ssc.78670 /len=1851"	GO:0044429//mitochondrial part	GO:0008410//CoA-transferase activity;GO:0042802//identical protein binding	GO:0007417//central nervous system development;GO:0050796//regulation of insulin secretion;GO:0009888//tissue development;GO:0044248//cellular catabolic process;GO:0001101//response to acid;GO:0009719;GO:0031667//response to nutrient levels;GO:0001678//cellular glucose homeostasis;GO:0048513//organ development;GO:0006950//response to stress;GO:0010033//response to organic substance	"gi|47522610|ref|NP_999103.1|/0/succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial precursor [Sus scrofa]"
gnl|UG|Ssc#S58312494	157	45.2	341	97.47	75	22.54	"PREDICTED: Sus scrofa histidine triad nucleotide-binding protein 1-like (LOC100518898), mRNA /cds=p(118,498) /gb=XM_003123907 /gi=311250093 /ug=Ssc.8331 /len=1895"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0019901//protein kinase binding;GO:0003824//catalytic activity	GO:0023052//signaling	gi|311250094|ref|XP_003123955.1|/6.95061e-68/PREDICTED: histidine triad nucleotide-binding protein 1-like [Sus scrofa]
gnl|UG|Ssc#S19549310	0	0	0	0	0	0	"995841 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN165422 /gi=46179852 /ug=Ssc.9609 /len=915"	-	-	-	-
gnl|UG|Ssc#S46876734	4	1.15	4	1.14	10	3.01	"PREDICTED: Sus scrofa Density-regulated protein (LOC100156971), mRNA /cds=p(135,731) /gb=XM_001928848 /gi=311270584 /ug=Ssc.51861 /len=1344"	-	GO:0005488//binding	-	gi|73995165|ref|XP_853345.1|/1.43804e-82/PREDICTED: similar to Density-regulated protein (DRP) (DRP1 protein) (Smooth muscle cell associated protein-3) (SMAP-3) [Canis familiaris]
gnl|UG|Ssc#S46876678	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa RNA binding motif protein 19 (RBM19), mRNA /cds=p(1,2904) /gb=XM_001928156 /gi=194043008 /ug=Ssc.26686 /len=4129"	GO:0043232;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0009790//embryo development	gi|194043009|ref|XP_001928191.1|/0/PREDICTED: probable RNA-binding protein 19 [Sus scrofa]
gnl|UG|Ssc#S58313948	717	206.43	649	185.52	549	164.99	"PREDICTED: Sus scrofa glutathione S-transferase P-like (LOC100525731), mRNA /cds=p(1,720) /gb=XM_003122453 /gi=311247131 /ug=Ssc.60632 /len=794"	GO:0032991//macromolecular complex;GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups;GO:0042277//peptide binding"	GO:0032868//response to insulin stimulus;GO:0043409//negative regulation of MAPKKK cascade;GO:0032611;GO:0010558;GO:0043407//negative regulation of MAP kinase activity;GO:0043627//response to estrogen stimulus;GO:0051384//response to glucocorticoid stimulus;GO:0033273//response to vitamin;GO:0006790//sulfur compound metabolic process;GO:0001101//response to acid;GO:0006915//apoptosis;GO:0009887//organ morphogenesis;GO:0031668//cellular response to extracellular stimulus;GO:0070849//response to epidermal growth factor stimulus;GO:0032682//negative regulation of chemokine production;GO:0021782//glial cell development	gi|311247132|ref|XP_003122501.1|/2.15999e-131/PREDICTED: glutathione S-transferase P-like [Sus scrofa]
gnl|UG|Ssc#S58312845	6	1.73	0	0	6	1.8	"PREDICTED: Sus scrofa GATA zinc finger domain containing 2A (GATAD2A), mRNA /cds=p(1,1899) /gb=XM_003123572 /gi=311249376 /ug=Ssc.44486 /len=3580"	GO:0016604//nuclear body;GO:0000118//histone deacetylase complex	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	"GO:0014020;GO:0001944//vasculature development;GO:0006355//regulation of transcription, DNA-dependent;GO:0006305;GO:0008219//cell death;GO:0010171//body morphogenesis"	gi|311249377|ref|XP_003123620.1|/0/PREDICTED: transcriptional repressor p66-alpha-like [Sus scrofa]
gnl|UG|Ssc#S58311104	5	1.44	5	1.43	4	1.2	"PREDICTED: Sus scrofa prolactin regulatory element binding (PREB), mRNA /cds=p(201,1457) /gb=XM_003125297 /gi=311252943 /ug=Ssc.2202 /len=2087"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0030528//transcription regulator activity;GO:0030695//GTPase regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006901//vesicle coating;GO:0048193//Golgi vesicle transport;GO:0006351//transcription, DNA-dependent;GO:0006487//protein N-linked glycosylation"	gi|311252944|ref|XP_003125345.1|/0/PREDICTED: prolactin regulatory element-binding protein-like [Sus scrofa]
gnl|UG|Ssc#S35171475	2	0.58	4	1.14	0	0	"Sus scrofa mRNA, clone:OVRM10038A07, expressed in ovary /gb=AK234981 /gi=115548364 /ug=Ssc.43569 /len=1479"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0032182//small conjugating protein binding;GO:0019901//protein kinase binding;GO:0032559;GO:0019787//small conjugating protein ligase activity	GO:0000209//protein polyubiquitination;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0002164//larval development;GO:0048806//genitalia development;GO:0010259//multicellular organismal aging;GO:0007050//cell cycle arrest;GO:0039019;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0009790//embryo development	"gi|119389044|pdb|2C4P|A/5.07544e-84/Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a"
gnl|UG|Ssc#S58311511	4	1.15	4	1.14	5	1.5	"PREDICTED: Sus scrofa neuronal PAS domain protein 2 (NPAS2), mRNA /cds=p(1,2418) /gb=XM_003124898 /gi=311252115 /ug=Ssc.92778 /len=2418"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0031072//heat shock protein binding;GO:0003676//nucleic acid binding;GO:0060089;GO:0001071//nucleic acid binding transcription factor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007626//locomotory behavior;GO:0023052//signaling;GO:0007399//nervous system development;GO:0048512//circadian behavior	gi|311252116|ref|XP_003124946.1|/0/PREDICTED: neuronal PAS domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58313441	0	0	0	0	0	0	"PREDICTED: Sus scrofa SRY (sex determining region Y)-box 6 (SOX-6), mRNA /cds=p(67,2784) /gb=XM_003122960 /gi=311248166 /ug=Ssc.15784 /len=2784"	-	-	-	-
gnl|UG|Ssc#S55323995	16	4.61	0	0	19	5.71	"Sus scrofa mRNA, clone:SPL010013H04, expressed in spleen /gb=AK350213 /gi=288780877 /ug=Ssc.11175 /len=1259"	GO:0031981//nuclear lumen	"GO:0003723//RNA binding;GO:0016876//ligase activity, forming aminoacyl-tRNA and related compounds;GO:0032559"	GO:0042254//ribosome biogenesis;GO:0010467//gene expression	gi|149709677|ref|XP_001497217.1|/1.97046e-171/PREDICTED: similar to MGC140358 protein [Equus caballus]
gnl|UG|Ssc#S46877225	40	11.52	9	2.57	11	3.31	"PREDICTED: Sus scrofa F-box and WD repeat domain containing 4 (FBXW4), mRNA /cds=p(61,1755) /gb=XM_001924973 /gi=311271749 /ug=Ssc.20217 /len=2558"	GO:0043234//protein complex	-	GO:0008284//positive regulation of cell proliferation;GO:0019941//modification-dependent protein catabolic process;GO:0007166//cell surface receptor linked signaling pathway;GO:0009888//tissue development;GO:0030326//embryonic limb morphogenesis	gi|311271750|ref|XP_001925008.2|/0/PREDICTED: f-box/WD repeat-containing protein 4 [Sus scrofa]
gnl|UG|Ssc#S58301583	4	1.15	17	4.86	0	0	"PREDICTED: Sus scrofa pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 (PLEKHA8), mRNA /cds=p(1,1587) /gb=XM_003134815 /gi=311275683 /ug=Ssc.21883 /len=2596"	GO:0044424//intracellular part	GO:0005319//lipid transporter activity;GO:0008289//lipid binding	GO:0006869//lipid transport	gi|311275684|ref|XP_003134863.1|/0/PREDICTED: pleckstrin homology domain-containing family A member 8-like [Sus scrofa]
gnl|UG|Ssc#S46876484	18	5.18	6	1.72	17	5.11	"PREDICTED: Sus scrofa kelch-like 22 (Drosophila) (KLHL22), mRNA /cds=p(280,2274) /gb=XM_001929590 /gi=311271081 /ug=Ssc.34350 /len=2807"	GO:0031461//cullin-RING ubiquitin ligase complex	-	GO:0009987//cellular process	gi|194043406|ref|XP_001929625.1|/0/PREDICTED: kelch-like protein 22 [Sus scrofa]
gnl|UG|Ssc#S55318334	9	2.59	17	4.86	17	5.11	"Sus scrofa mRNA, clone:MLN010093G08, expressed in mesenteric lymph nodes /gb=AK347032 /gi=288786550 /ug=Ssc.83389 /len=1029"	-	-	-	-
gnl|UG|Ssc#S58304762	205	59.02	242	69.18	140	42.07	"PREDICTED: Sus scrofa dynein light chain 2, cytoplasmic-like (LOC100512860), mRNA /cds=p(100,369) /gb=XM_003131635 /gi=311267676 /ug=Ssc.12207 /len=1254"	GO:0016020//membrane;GO:0015629//actin cytoskeleton;GO:0030286//dynein complex;GO:0044444//cytoplasmic part	GO:0045502//dynein binding;GO:0042802//identical protein binding;GO:0003774//motor activity;GO:0016887//ATPase activity	GO:0006810//transport;GO:0007017//microtubule-based process;GO:0008038//neuron recognition;GO:0003006//developmental process involved in reproduction;GO:0048102//autophagic cell death;GO:0007015//actin filament organization;GO:0006917//induction of apoptosis;GO:0006997//nucleus organization;GO:0048232//male gamete generation;GO:0007472//wing disc morphogenesis;GO:0044248//cellular catabolic process	"gi|119614889|gb|EAW94483.1|/5.59918e-53/dynein, light chain, LC8-type 2, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S20938401	79	22.74	43	12.29	108	32.46	"AJ650124 CSEQRAN19 Sus scrofa cDNA clone C0003274_H15, mRNA sequence /clone=C0003274_H15 /gb=AJ650124 /gi=49326969 /ug=Ssc.85648 /len=450"	GO:0019866//organelle inner membrane;GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0012501//programmed cell death	"gi|149036229|gb|EDL90895.1|/7.68691e-60/growth hormone inducible transmembrane protein, isoform CRA_f [Rattus norvegicus]"
gnl|UG|Ssc#S20116701	114	32.82	161	46.02	98	29.45	"Sus scrofa complement component 3 (C3), mRNA /cds=p(65,5050) /gb=NM_214009 /gi=47522843 /ug=Ssc.61 /len=5127"	GO:0044421//extracellular region part	GO:0061135;GO:0005515//protein binding;GO:0004942//anaphylatoxin receptor activity	GO:0007166//cell surface receptor linked signaling pathway;GO:0042221//response to chemical stimulus;GO:0007599//hemostasis;GO:0002455//humoral immune response mediated by circulating immunoglobulin;GO:0001905;GO:0001819//positive regulation of cytokine production;GO:0001794;GO:0045765//regulation of angiogenesis;GO:0045807//positive regulation of endocytosis;GO:0010466//negative regulation of peptidase activity	gi|47522844|ref|NP_999174.1|/0/complement C3 [Sus scrofa]
gnl|UG|Ssc#S40431000	0	0	0	0	0	0	"rrec13_k8.y1 rec Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW525606 /gi=183086210 /ug=Ssc.68555 /len=397"	-	-	-	-
gnl|UG|Ssc#S55320339	38	10.94	59	16.87	31	9.32	"Sus scrofa mRNA, clone:THY010049D07, expressed in thymus /gb=AK351624 /gi=288784533 /ug=Ssc.27954 /len=2183"	-	-	GO:0006810//transport	gi|311267478|ref|XP_003131584.1|/1.58468e-119/PREDICTED: sorting nexin-11-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S17518363	30	8.64	31	8.86	34	10.22	"BX672933 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0040.i.12 5prim, mRNA sequence /clone=scac0040.i.12 /clone_end=5' /gb=BX672933 /gi=90237978 /ug=Ssc.8143 /len=930"	-	-	-	-
gnl|UG|Ssc#S35170903	12	3.45	20	5.72	6	1.8	"Sus scrofa mRNA, clone:OVRM10070B06, expressed in ovary /gb=AK235339 /gi=115548936 /ug=Ssc.30412 /len=1349"	-	-	-	gi|311272770|ref|XP_003133582.1|/7.03777e-13/PREDICTED: PTB domain-containing engulfment adapter protein 1-like [Sus scrofa]
gnl|UG|Ssc#S47626223	463	133.3	132	37.73	369	110.89	"Sus scrofa v-crk sarcoma virus CT10 oncogene-like protein isoform a mRNA, complete cds /cds=p(116,1030) /gb=FJ175657 /gi=207080691 /ug=Ssc.17755 /len=3570"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0051219//phosphoprotein binding;GO:0030674//protein binding, bridging;GO:0019904//protein domain specific binding"	"GO:0007010//cytoskeleton organization;GO:0007599//hemostasis;GO:0032879//regulation of localization;GO:0006355//regulation of transcription, DNA-dependent;GO:0000768//syncytium formation by plasma membrane fusion;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0016601//Rac protein signal transduction;GO:0000187//activation of MAPK activity"	gi|73967347|ref|XP_537765.2|/1.65812e-164/PREDICTED: similar to myosin IC [Canis familiaris]
gnl|UG|Ssc#S58301485	0	0	0	0	0	0	"PREDICTED: Sus scrofa zinc finger protein 746-like (LOC100520469), mRNA /cds=p(1,1899) /gb=XM_003134911 /gi=311275883 /ug=Ssc.94346 /len=1899"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0043565//sequence-specific DNA binding;GO:0019899//enzyme binding	"GO:0006351//transcription, DNA-dependent;GO:0008219//cell death"	gi|311275884|ref|XP_003134959.1|/0/PREDICTED: zinc finger protein 746-like [Sus scrofa]
gnl|UG|Ssc#S35173102	198	57.01	57	16.29	264	79.34	"Sus scrofa mRNA, clone:SPL010064D02, expressed in spleen /gb=AK237579 /gi=115546733 /ug=Ssc.15631 /len=1490"	-	-	-	-
gnl|UG|Ssc#S46876925	5	1.44	0	0	2	0.6	"PREDICTED: Sus scrofa myoferlin (MYOF), mRNA /cds=p(1,4509) /gb=XM_001926023 /gi=311271641 /ug=Ssc.28997 /len=5039"	GO:0044459//plasma membrane part;GO:0005635//nuclear envelope;GO:0012506//vesicle membrane;GO:0031224//intrinsic to membrane	GO:0008289//lipid binding	GO:0003012//muscle system process;GO:0003013;GO:0007009//plasma membrane organization	gi|311271642|ref|XP_001926058.2|/0/PREDICTED: myoferlin [Sus scrofa]
gnl|UG|Ssc#S58304423	43	12.38	47	13.43	105	31.56	"PREDICTED: Sus scrofa period circadian protein homolog 1-like (LOC100511408), mRNA /cds=p(160,4002) /gb=XM_003131971 /gi=311268370 /ug=Ssc.16979 /len=4598"	-	-	-	-
gnl|UG|Ssc#S35167115	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10034E12, expressed in liver /gb=AK232829 /gi=115552624 /ug=Ssc.51903 /len=4069"	GO:0042598//vesicular fraction;GO:0016020//membrane	GO:0005488//binding	GO:0009653//anatomical structure morphogenesis;GO:0042221//response to chemical stimulus;GO:0009987//cellular process	gi|311271083|ref|XP_001929634.2|/0/PREDICTED: integral membrane protein DGCR2/IDD isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55322456	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:TCH010052B07, expressed in trachea /gb=AK350888 /gi=288782416 /ug=Ssc.30024 /len=1513"	GO:0030532//small nuclear ribonucleoprotein complex;GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	"GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0050953//sensory perception of light stimulus;GO:0000245//spliceosome assembly	gi|311252012|ref|XP_003124874.1|/0/PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like [Sus scrofa]
gnl|UG|Ssc#S58306747	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa DNA polymerase delta subunit 3-like (LOC100515619), mRNA /cds=p(76,1473) /gb=XM_003129642 /gi=311263486 /ug=Ssc.24875 /len=3444"	GO:0031981//nuclear lumen;GO:0042575	GO:0005488//binding;GO:0034061	GO:0006289//nucleotide-excision repair;GO:0000723//telomere maintenance;GO:0006261//DNA-dependent DNA replication;GO:0051320	gi|311263487|ref|XP_003129690.1|/0/PREDICTED: DNA polymerase delta subunit 3-like [Sus scrofa]
gnl|UG|Ssc#S21576579	6	1.73	5	1.43	0	0	"UMC-pd3end3-017-b06 Endometrium gilt D3 of estrous cycle pd3end Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO989539 /gi=51348813 /ug=Ssc.86591 /len=368"	-	-	-	-
gnl|UG|Ssc#S58304622	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein C17orf63 homolog (LOC100518216), mRNA /cds=p(1,1728) /gb=XM_003131790 /gi=311267966 /ug=Ssc.94833 /len=2009"	-	-	-	gi|311267967|ref|XP_003131838.1|/0/PREDICTED: uncharacterized protein C17orf63 homolog [Sus scrofa]
gnl|UG|Ssc#S58305699	10	2.88	10	2.86	11	3.31	"PREDICTED: Sus scrofa WW domain-containing adapter protein with coiled-coil-like (LOC100517599), mRNA /cds=p(1,1866) /gb=XM_003130704 /gi=311265629 /ug=Ssc.10885 /len=3659"	GO:0016604//nuclear body;GO:0030529//ribonucleoprotein complex	GO:0001099	GO:0007050//cell cycle arrest;GO:0033523//histone H2B ubiquitination;GO:0033554//cellular response to stress;GO:0006513//protein monoubiquitination	gi|311265630|ref|XP_003130752.1|/0/PREDICTED: WW domain-containing adapter protein with coiled-coil-like [Sus scrofa]
gnl|UG|Ssc#S20116757	14	4.03	0	0	0	0	"Sus scrofa nucleotide sugar transporter-like (NST), mRNA /cds=p(223,1197) /gb=NM_213951 /gi=47522731 /ug=Ssc.93895 /len=1251"	-	-	GO:0006810//transport	gi|47522732|ref|NP_999116.1|/2.37114e-84/probable UDP-sugar transporter protein SLC35A4 [Sus scrofa]
gnl|UG|Ssc#S58314959	13	3.74	9	2.57	12	3.61	"PREDICTED: Sus scrofa RNA-binding protein MEX3C-like (LOC100525021), mRNA /cds=p(1,1407) /gb=XM_003121445 /gi=311244542 /ug=Ssc.8821 /len=3213"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311244543|ref|XP_003121493.1|/0/PREDICTED: RNA-binding protein MEX3C-like [Sus scrofa]
gnl|UG|Ssc#S46876931	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa cytoplasmic polyadenylation element binding protein 3 (CPEB3), mRNA /cds=p(187,2262) /gb=XM_001927491 /gi=311271627 /ug=Ssc.47050 /len=2397"	-	GO:0003676//nucleic acid binding	-	gi|311271628|ref|XP_001927526.2|/0/PREDICTED: cytoplasmic polyadenylation element-binding protein 3 [Sus scrofa]
gnl|UG|Ssc#S23212973	0	0	0	0	0	0	"Sus scrofa clone Clu_59261.scr.msk.p1.Contig1, mRNA sequence /gb=AY610035 /gi=52351605 /ug=Ssc.12569 /len=2235"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0042802//identical protein binding;GO:0046872//metal ion binding;GO:0046983//protein dimerization activity	GO:0030098//lymphocyte differentiation;GO:0006810//transport	gi|62898994|dbj|BAD97351.1|/4.50207e-69/N8 protein long isoform (Fragment) variant [Homo sapiens]
gnl|UG|Ssc#S17518712	7	2.02	0	0	2	0.6	"BX673282 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0043.h.09 5prim, mRNA sequence /clone=scac0043.h.09 /clone_end=5' /gb=BX673282 /gi=90238452 /ug=Ssc.42403 /len=819"	-	-	-	gi|311255842|ref|XP_003126392.1|/8.00442e-68/PREDICTED: hypothetical protein LOC100524989 [Sus scrofa]
gnl|UG|Ssc#S35166105	4	1.15	3	0.86	4	1.2	"Sus scrofa mRNA, clone:THY010207F10, expressed in thymus /gb=AK239820 /gi=115553633 /ug=Ssc.57212 /len=2742"	GO:0015629//actin cytoskeleton;GO:0009925//basal plasma membrane;GO:0031252//cell leading edge;GO:0012505//endomembrane system;GO:0045202//synapse	GO:0008092//cytoskeletal protein binding;GO:0032559	GO:0045597//positive regulation of cell differentiation;GO:0010033//response to organic substance;GO:0031346//positive regulation of cell projection organization;GO:0030041//actin filament polymerization;GO:0008064//regulation of actin polymerization or depolymerization;GO:0010591//regulation of lamellipodium assembly;GO:0048858//cell projection morphogenesis	gi|5031573|ref|NP_005712.1|/0/actin-related protein 3 [Homo sapiens]
gnl|UG|Ssc#S35169995	18	5.18	8	2.29	10	3.01	"Sus scrofa mRNA, clone:TES010044G08, expressed in testis /gb=AK238504 /gi=115549844 /ug=Ssc.21622 /len=1334"	GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0019203//carbohydrate phosphatase activity	GO:0006006//glucose metabolic process;GO:0006796//phosphate metabolic process	"gi|114051459|ref|NP_001039629.1|/3.43324e-176/fructose-1,6-bisphosphatase isozyme 2 [Bos taurus]"
gnl|UG|Ssc#S35171052	15	4.32	8	2.29	8	2.4	"Sus scrofa mRNA, clone:LNG010018F05, expressed in lung /gb=AK231745 /gi=115548787 /ug=Ssc.51396 /len=1207"	-	-	-	-
gnl|UG|Ssc#S58309569	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa TLD domain-containing protein KIAA1609-like (LOC100514962), mRNA /cds=p(1,1371) /gb=XM_003126827 /gi=311256939 /ug=Ssc.94182 /len=1371"	-	-	-	gi|311256940|ref|XP_003126875.1|/0/PREDICTED: TLD domain-containing protein KIAA1609-like [Sus scrofa]
gnl|UG|Ssc#S58309332	198	57.01	72	20.58	118	35.46	"PREDICTED: Sus scrofa RNA-binding protein 42-like, transcript variant 2 (LOC100520432), mRNA /cds=p(116,1549) /gb=XM_003127066 /gi=311257423 /ug=Ssc.7915 /len=1676"	-	GO:0005488//binding	-	gi|311257426|ref|XP_003127113.1|/5.40531e-61/PREDICTED: RNA-binding protein 42-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46877058	16	4.61	5	1.43	19	5.71	"PREDICTED: Sus scrofa growth hormone inducible transmembrane protein, transcript variant 2 (GHITM), mRNA /cds=p(238,1275) /gb=XM_001927406 /gi=311271447 /ug=Ssc.54864 /len=2562"	GO:0019866//organelle inner membrane;GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0012501//programmed cell death	gi|194042216|ref|XP_001927428.1|/0/PREDICTED: growth hormone-inducible transmembrane protein isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46878967	40	11.52	16	4.57	33	9.92	"PREDICTED: Sus scrofa SMEK homolog 1, suppressor of mek1 (Dictyostelium), transcript variant 1 (SMEK1), mRNA /cds=p(647,3109) /gb=XM_001928835 /gi=311261451 /ug=Ssc.14341 /len=3109"	GO:0015630//microtubule cytoskeleton;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|301770817|ref|XP_002920829.1|/0/PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3A-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55244042	0	0	2	0.57	0	0	"FS673561 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010031D11 5', mRNA sequence /clone=KDN010031D11 /clone_end=5' /gb=FS673561 /gi=288236779 /ug=Ssc.41286 /len=849"	GO:0005815//microtubule organizing center;GO:0043234//protein complex;GO:0005770//late endosome;GO:0044431//Golgi apparatus part;GO:0030133//transport vesicle	-	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process	gi|61212960|sp|Q5VYK3.2|ECM29_HUMAN/1.58549e-110/RecName: Full=Proteasome-associated protein ECM29 homolog; Short=Ecm29
gnl|UG|Ssc#S20938331	18	5.18	13	3.72	21	6.31	"AJ650054 CSEQRAN19 Sus scrofa cDNA clone C0003274_E05, mRNA sequence /clone=C0003274_E05 /gb=AJ650054 /gi=49326899 /ug=Ssc.85643 /len=540"	GO:0031224//intrinsic to membrane;GO:0030137//COPI-coated vesicle;GO:0031985//Golgi cisterna;GO:0012505//endomembrane system	GO:0005083//small GTPase regulator activity;GO:0004672//protein kinase activity;GO:0042802//identical protein binding;GO:0032559	GO:0006996//organelle organization;GO:0019222//regulation of metabolic process;GO:0006891//intra-Golgi vesicle-mediated transport;GO:0006464//protein modification process	"gi|149025379|gb|EDL81746.1|/2.34022e-74/golgi autoantigen, golgin subfamily a, 5, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S58304205	25	7.2	55	15.72	28	8.41	"PREDICTED: Sus scrofa inositol hexakisphosphate kinase 2-like (LOC100523922), mRNA /cds=p(1,2430) /gb=XM_003132192 /gi=311268868 /ug=Ssc.5664 /len=2703"	GO:0043231//intracellular membrane-bounded organelle;GO:0005856//cytoskeleton	GO:0051766;GO:0000828//inositol hexakisphosphate kinase activity;GO:0032559	GO:0046488//phosphatidylinositol metabolic process;GO:0016049//cell growth;GO:0006915//apoptosis;GO:0006796//phosphate metabolic process;GO:0019221//cytokine-mediated signaling pathway;GO:0015698//inorganic anion transport	gi|311268869|ref|XP_003132240.1|/0/PREDICTED: inositol hexakisphosphate kinase 2-like [Sus scrofa]
gnl|UG|Ssc#S55325630	4	1.15	5	1.43	4	1.2	"Sus scrofa mRNA, clone:PBL010102A05, expressed in peripheral blood mononuclear cells /gb=AK349021 /gi=288779196 /ug=Ssc.46211 /len=1951"	GO:0031981//nuclear lumen	GO:0009975//cyclase activity	GO:0010467//gene expression;GO:0022613//ribonucleoprotein complex biogenesis	gi|73946912|ref|XP_541299.2|/0/PREDICTED: similar to RNA cyclase homolog [Canis familiaris]
gnl|UG|Ssc#S55325281	0	0	0	0	0	0	"Sus scrofa mRNA, clone:PTG010057E01, expressed in pituitary gland /gb=AK349370 /gi=288779545 /ug=Ssc.27623 /len=2959"	GO:0031224//intrinsic to membrane	GO:0005496//steroid binding	-	gi|194038694|ref|XP_001928425.1|/2.17215e-94/PREDICTED: stomatin (EPB72)-like 1 [Sus scrofa]
gnl|UG|Ssc#S23213147	466	134.16	162	46.31	634	190.53	"Sus scrofa clone Clu_36389.scr.msk.p1.Contig1, mRNA sequence /gb=AY609861 /gi=52351431 /ug=Ssc.21783 /len=1102"	GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|297307131|ref|NP_001171996.1|/6.61859e-165/39S ribosomal protein L2, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S35172582	20	5.76	8	2.29	6	1.8	"Sus scrofa mRNA, clone:OVR010098H07, expressed in ovary /gb=AK234626 /gi=115547253 /ug=Ssc.20455 /len=2403"	-	-	-	gi|311261618|ref|XP_003128778.1|/0/PREDICTED: WD repeat-containing protein 20-like [Sus scrofa]
gnl|UG|Ssc#S17518772	388	111.71	319	91.19	406	122.01	"BX673342 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0038.m.10 5prim, mRNA sequence /clone=scac0038.m.10 /clone_end=5' /gb=BX673342 /gi=90241911 /ug=Ssc.7328 /len=711"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	-	GO:0000377	gi|13775200|ref|NP_112577.1|/1.35024e-46/splicing factor 3B subunit 5 [Homo sapiens]
gnl|UG|Ssc#S58303425	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa oxysterol-binding protein 2-like (LOC100515970), mRNA /cds=p(1,3324) /gb=XM_003132982 /gi=311270945 /ug=Ssc.33721 /len=3362"	GO:0044464//cell part	GO:0005488//binding	GO:0051234//establishment of localization;GO:0010876	gi|311270946|ref|XP_003133030.1|/0/PREDICTED: oxysterol-binding protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58304612	9	2.59	3	0.86	2	0.6	"PREDICTED: Sus scrofa nuclear fragile X mental retardation-interacting protein 2-like (LOC100515858), mRNA /cds=p(90,2180) /gb=XM_003131778 /gi=311267986 /ug=Ssc.43187 /len=2820"	GO:0005840//ribosome;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	-	gi|311267987|ref|XP_003131826.1|/0/PREDICTED: nuclear fragile X mental retardation-interacting protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58304631	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa NIMA (never in mitosis gene a)- related kinase 8 (NEK8), mRNA /cds=p(64,2187) /gb=XM_003131767 /gi=311267948 /ug=Ssc.6212 /len=2909"	GO:0044424//intracellular part	GO:0043169//cation binding;GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|311267949|ref|XP_003131815.1|/0/PREDICTED: serine/threonine-protein kinase Nek8-like [Sus scrofa]
gnl|UG|Ssc#S58304644	2	0.58	4	1.14	4	1.2	"PREDICTED: Sus scrofa neurofibromin 1 (NF1), mRNA /cds=p(1,8484) /gb=XM_003131755 /gi=311267921 /ug=Ssc.46762 /len=8546"	GO:0043005//neuron projection;GO:0032991//macromolecular complex;GO:0044430//cytoskeletal part;GO:0009898//internal side of plasma membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0005624//membrane fraction	GO:0008047//enzyme activator activity;GO:0005083//small GTPase regulator activity;GO:0015631//tubulin binding	GO:0001935//endothelial cell proliferation;GO:0001952//regulation of cell-matrix adhesion;GO:0014002//astrocyte development;GO:0043405//regulation of MAP kinase activity;GO:0007010//cytoskeleton organization;GO:0033673//negative regulation of kinase activity;GO:0022603//regulation of anatomical structure morphogenesis;GO:0048592//eye morphogenesis;GO:0007405//neuroblast proliferation;GO:0014044//Schwann cell development;GO:0043065//positive regulation of apoptosis;GO:0021543//pallium development;GO:0014706//striated muscle tissue development;GO:0032844;GO:0032318//regulation of Ras GTPase activity;GO:0001503//ossification;GO:0001822//kidney development;GO:0045686//negative regulation of glial cell differentiation;GO:0002762//negative regulation of myeloid leukocyte differentiation;GO:0016601//Rac protein signal transduction;GO:0035270//endocrine system development;GO:0010594//regulation of endothelial cell migration;GO:0030198//extracellular matrix organization;GO:0042308//negative regulation of protein import into nucleus;GO:0008285//negative regulation of cell proliferation;GO:0010741;GO:0001525//angiogenesis;GO:0007632//visual behavior;GO:0048168//regulation of neuronal synaptic plasticity;GO:0009611//response to wounding;GO:0007269//neurotransmitter secretion;GO:0031281	gi|311267922|ref|XP_003131803.1|/0/PREDICTED: neurofibromin-like [Sus scrofa]
gnl|UG|Ssc#S35166242	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10217E11, expressed in ovary /gb=AK236699 /gi=115553496 /ug=Ssc.1798 /len=2727"	GO:0043005//neuron projection;GO:0044459//plasma membrane part;GO:0031252//cell leading edge;GO:0032432//actin filament bundle;GO:0030427//site of polarized growth	GO:0003779//actin binding	GO:0031668//cellular response to extracellular stimulus;GO:0007015//actin filament organization;GO:0048870//cell motility;GO:0048513//organ development	gi|226372953|ref|NP_001139772.1|/0/fascin [Sus scrofa]
gnl|UG|Ssc#S26710984	6	1.73	2	0.57	6	1.8	"AJ947068 KN404_1 Sus scrofa cDNA clone C0007745c11 3', mRNA sequence /clone=C0007745c11 /clone_end=3' /gb=AJ947068 /gi=74363810 /ug=Ssc.37010 /len=825"	-	-	-	-
gnl|UG|Ssc#S58301206	16	4.61	17	4.86	35	10.52	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase RLIM-like (LOC100511426), mRNA /cds=p(290,2161) /gb=XM_003135188 /gi=311276512 /ug=Ssc.9094 /len=2363"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0003712//transcription cofactor activity;GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0032446//protein modification by small protein conjugation;GO:0019941//modification-dependent protein catabolic process;GO:0043392//negative regulation of DNA binding;GO:0009048//dosage compensation, by inactivation of X chromosome"	gi|311276513|ref|XP_003135236.1|/0/PREDICTED: e3 ubiquitin-protein ligase RLIM-like [Sus scrofa]
gnl|UG|Ssc#S58313567	13	3.74	10	2.86	8	2.4	"PREDICTED: Sus scrofa diacylglycerol kinase, zeta 104kDa (DGKZ), mRNA /cds=p(1,2367) /gb=XM_003122843 /gi=311247914 /ug=Ssc.54504 /len=3064"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031252//cell leading edge	GO:0016301//kinase activity;GO:0005515//protein binding;GO:0032559;GO:0043169//cation binding;GO:0030234//enzyme regulator activity	GO:0007599//hemostasis;GO:0046578//regulation of Ras protein signal transduction;GO:0016310//phosphorylation;GO:0048870//cell motility;GO:0000077//DNA damage checkpoint;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0001775//cell activation;GO:0007346//regulation of mitotic cell cycle	gi|311247915|ref|XP_003122891.1|/0/PREDICTED: diacylglycerol kinase zeta-like [Sus scrofa]
gnl|UG|Ssc#S58307187	92	26.49	47	13.43	78	23.44	"PREDICTED: Sus scrofa protein sprouty homolog 1-like (LOC100519435), mRNA /cds=p(642,1601) /gb=XM_003129209 /gi=311262591 /ug=Ssc.21348 /len=3117"	GO:0016020//membrane;GO:0031252//cell leading edge;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0001822//kidney development;GO:0043409//negative regulation of MAPKKK cascade;GO:0046578//regulation of Ras protein signal transduction;GO:0008283//cell proliferation;GO:0003156//regulation of organ formation;GO:0007173//epidermal growth factor receptor signaling pathway;GO:0043405//regulation of MAP kinase activity;GO:0035295//tube development;GO:0008543//fibroblast growth factor receptor signaling pathway;GO:0034260//negative regulation of GTPase activity	gi|311262592|ref|XP_003129257.1|/1.33194e-170/PREDICTED: protein sprouty homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S35173879	60	17.27	73	20.87	27	8.11	"Sus scrofa mRNA, clone:SPL010036B01, expressed in spleen /gb=AK237397 /gi=115545956 /ug=Ssc.55641 /len=1602"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0003824//catalytic activity;GO:0043169//cation binding	-	gi|194219379|ref|XP_001497905.2|/4.86619e-120/PREDICTED: similar to Fumarylacetoacetate hydrolase domain containing 1 [Equus caballus]
gnl|UG|Ssc#S58301685	74	21.3	24	6.86	80	24.04	"PREDICTED: Sus scrofa staphylococcal nuclease domain-containing protein 1-like (LOC100521234), mRNA /cds=p(1,414) /gb=XM_003134711 /gi=311275476 /ug=Ssc.11771 /len=960"	GO:0048770;GO:0031332	"GO:0000989//transcription factor binding transcription factor activity;GO:0005488//binding;GO:0016788//hydrolase activity, acting on ester bonds"	GO:0051704;GO:0016458//gene silencing	gi|311275477|ref|XP_003134759.1|/2.40709e-72/PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55305456	3	0.86	3	0.86	6	1.8	"FS704429 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010096D11 5', mRNA sequence /clone=PST010096D11 /clone_end=5' /gb=FS704429 /gi=288307759 /ug=Ssc.64257 /len=889"	GO:0005798//Golgi-associated vesicle	GO:0005488//binding	"GO:0050688//regulation of defense response to virus;GO:0000301//retrograde transport, vesicle recycling within Golgi"	gi|296471621|gb|DAA13736.1|/6.69516e-143/phosphofurin acidic cluster sorting protein 1 [Bos taurus]
gnl|UG|Ssc#S55325031	12	3.45	2	0.57	11	3.31	"Sus scrofa mRNA, clone:PTG010107E06, expressed in pituitary gland /gb=AK349577 /gi=288779841 /ug=Ssc.4847 /len=1120"	GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle	-	GO:0048193//Golgi vesicle transport	gi|311256886|ref|XP_003126851.1|/2.73781e-73/PREDICTED: trafficking protein particle complex subunit 2-like protein-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S46875807	5	1.44	0	0	2	0.6	"PREDICTED: Sus scrofa patched domain containing 1 (PTCHD1), mRNA /cds=p(316,2667) /gb=XM_001926260 /gi=311276037 /ug=Ssc.94622 /len=2693"	GO:0031224//intrinsic to membrane	GO:0004888//transmembrane receptor activity	GO:0050877//neurological system process;GO:0007166//cell surface receptor linked signaling pathway	gi|74006601|ref|XP_849603.1|/0/PREDICTED: similar to patched domain containing 1 isoform 3 [Canis familiaris]
gnl|UG|Ssc#S58314816	14	4.03	9	2.57	8	2.4	"PREDICTED: Sus scrofa RNA polymerase-associated protein RTF1 homolog (LOC100524183), mRNA /cds=p(1,2403) /gb=XM_003121609 /gi=311244947 /ug=Ssc.5152 /len=2403"	GO:0031981//nuclear lumen	GO:0043566//structure-specific DNA binding	"GO:0006351//transcription, DNA-dependent;GO:0006464//protein modification process"	gi|311244948|ref|XP_003121657.1|/0/PREDICTED: RNA polymerase-associated protein RTF1 homolog [Sus scrofa]
gnl|UG|Ssc#S34509706	2	0.58	3	0.86	0	0	"DB789248 full-length enriched swine cDNA library, adult adrenal gland Sus scrofa cDNA clone ADR010087F11 5', mRNA sequence /clone=ADR010087F11 /clone_end=5' /gb=DB789248 /gi=112744426 /ug=Ssc.8268 /len=831"	-	-	-	-
gnl|UG|Ssc#S58304703	7	2.02	7	2	2	0.6	"PREDICTED: Sus scrofa amyloid beta precursor protein (cytoplasmic tail) binding protein 2 (APPBP2), mRNA /cds=p(245,2002) /gb=XM_003131695 /gi=311267794 /ug=Ssc.29911 /len=2345"	GO:0012506//vesicle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton	GO:0015631//tubulin binding;GO:0003774//motor activity	GO:0015031//protein transport	gi|114669739|ref|XP_001136833.1|/0/PREDICTED: amyloid beta precursor protein-binding protein 2 [Pan troglodytes]
gnl|UG|Ssc#S58315235	3	0.86	5	1.43	0	0	"PREDICTED: Sus scrofa human immunodeficiency virus type I enhancer binding protein 2 (HIVEP2), mRNA /cds=p(1,7320) /gb=XM_003121170 /gi=311243853 /ug=Ssc.60417 /len=7491"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0023052//signaling;GO:0006351//transcription, DNA-dependent"	gi|311243854|ref|XP_003121218.1|/0/PREDICTED: transcription factor HIVEP2-like [Sus scrofa]
gnl|UG|Ssc#S46880422	45	12.96	65	18.58	46	13.82	"PREDICTED: Sus scrofa malic enzyme 1, NADP(+)-dependent, cytosolic (ME1), mRNA /cds=p(135,1850) /gb=XM_001924333 /gi=311244402 /ug=Ssc.16336 /len=3312"	-	-	-	-
gnl|UG|Ssc#S35167453	6	1.73	0	0	0	0	"Sus scrofa mRNA, clone:AMP010014B03, expressed in alveolar macrophage /gb=AK230595 /gi=115552286 /ug=Ssc.8624 /len=2618"	GO:0005681//spliceosomal complex	GO:0003676//nucleic acid binding	GO:0000377;GO:0043484//regulation of RNA splicing	gi|149730773|ref|XP_001501165.1|/0/PREDICTED: similar to Nucampholin homolog (fSAPb) isoform 2 [Equus caballus]
gnl|UG|Ssc#S20935422	58	16.7	39	11.15	38	11.42	"AJ647145 CSEQRAN19 Sus scrofa cDNA clone C0003104_N14, mRNA sequence /clone=C0003104_N14 /gb=AJ647145 /gi=49323990 /ug=Ssc.74046 /len=485"	GO:0043231//intracellular membrane-bounded organelle;GO:0000267//cell fraction;GO:0044444//cytoplasmic part	"GO:0004601//peroxidase activity;GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;GO:0061135;GO:0042277//peptide binding;GO:0019904//protein domain specific binding"	GO:0019725//cellular homeostasis;GO:0010468//regulation of gene expression;GO:0010466//negative regulation of peptidase activity;GO:0006639//acylglycerol metabolic process;GO:0002064//epithelial cell development;GO:0048871//multicellular organismal homeostasis;GO:0009608//response to symbiont;GO:0050954//sensory perception of mechanical stimulus;GO:0002437//inflammatory response to antigenic stimulus;GO:0033194//response to hydroperoxide;GO:0009411//response to UV;GO:0009112;GO:0010498//proteasomal protein catabolic process;GO:0043542//endothelial cell migration;GO:0006163//purine nucleotide metabolic process;GO:0042743//hydrogen peroxide metabolic process;GO:0010212//response to ionizing radiation;GO:0042246//tissue regeneration;GO:0043066//negative regulation of apoptosis;GO:0050880//regulation of blood vessel size;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0006790//sulfur compound metabolic process;GO:0000302//response to reactive oxygen species;GO:0003015//heart process;GO:0055114//oxidation-reduction process;GO:0008629//induction of apoptosis by intracellular signals;GO:0044419//interspecies interaction between organisms;GO:0010038//response to metal ion;GO:0008637//apoptotic mitochondrial changes;GO:0048747//muscle fiber development;GO:0001525//angiogenesis;GO:0033598//mammary gland epithelial cell proliferation	gi|145275165|ref|NP_110453.3|/2.90488e-82/glutathione peroxidase 1 [Rattus norvegicus]
gnl|UG|Ssc#S55263229	0	0	2	0.57	2	0.6	"FS644202 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10053E11 5', mRNA sequence /clone=BFLT10053E11 /clone_end=5' /gb=FS644202 /gi=288260376 /ug=Ssc.93169 /len=513"	-	-	-	-
gnl|UG|Ssc#S23756981	2	0.58	2	0.57	4	1.2	"1113980 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN114600 /gi=59808576 /ug=Ssc.45777 /len=846"	-	-	-	-
gnl|UG|Ssc#S46876360	73	21.02	41	11.72	73	21.94	"PREDICTED: Sus scrofa CLASP1 protein (LOC100155000), mRNA /cds=p(1,1128) /gb=XM_001924533 /gi=311272200 /ug=Ssc.18438 /len=3810"	GO:0043231//intracellular membrane-bounded organelle;GO:0000776//kinetochore;GO:0005813//centrosome;GO:0005876//spindle microtubule	GO:0008017//microtubule binding	GO:0007067//mitosis;GO:0006935//chemotaxis;GO:0007019//microtubule depolymerization	gi|311272201|ref|XP_001924568.2|/0/PREDICTED: CLIP-associating protein 1 [Sus scrofa]
gnl|UG|Ssc#S46880436	333	95.87	276	78.89	311	93.46	"PREDICTED: Sus scrofa histone deacetylase 2-like (LOC100156170), mRNA /cds=p(1,2016) /gb=XM_001925318 /gi=311244363 /ug=Ssc.40360 /len=3142"	GO:0070822//Sin3-type complex;GO:0031519//PcG protein complex	GO:0001071//nucleic acid binding transcription factor activity;GO:0016564//transcription repressor activity;GO:0005515//protein binding;GO:0003677//DNA binding;GO:0017136//NAD-dependent histone deacetylase activity	GO:0030326//embryonic limb morphogenesis;GO:0006915//apoptosis;GO:0010557;GO:0045687//positive regulation of glial cell differentiation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0043392//negative regulation of DNA binding;GO:0021543//pallium development;GO:0030162//regulation of proteolysis;GO:0051726//regulation of cell cycle;GO:0042476//odontogenesis;GO:0008544//epidermis development;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0010975//regulation of neuron projection development;GO:0009408//response to heat;GO:0007599//hemostasis;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0006476//protein deacetylation;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0008283//cell proliferation;GO:0016568//chromatin modification;GO:0060788;GO:0014073	gi|194035198|ref|XP_001925353.1|/0/PREDICTED: histone deacetylase 2-like [Sus scrofa]
gnl|UG|Ssc#S58314233	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa GTPase-activating protein and VPS9 domain-containing protein 1-like (LOC100516057), mRNA /cds=p(760,1968) /gb=XM_003122167 /gi=311246460 /ug=Ssc.80863 /len=2992"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0005515//protein binding;GO:0030695//GTPase regulator activity	GO:0051049//regulation of transport;GO:0016192//vesicle-mediated transport;GO:0009966//regulation of signal transduction	gi|194225830|ref|XP_001917140.1|/0/PREDICTED: GTPase activating protein and VPS9 domains 1 [Equus caballus]
gnl|UG|Ssc#S24455930	4	1.15	9	2.57	3	0.9	"Sus scrofa transposase DDE-like protein mRNA, complete cds /cds=p(1190,2398) /gb=AY864607 /gi=62208246 /ug=Ssc.13798 /len=2673"	-	GO:0004871//signal transducer activity;GO:0003676//nucleic acid binding;GO:0003824//catalytic activity	GO:0023052//signaling;GO:0006310//DNA recombination	gi|72386551|ref|XP_843700.1|/0/transposase of Tn10 [Trypanosoma brucei]
gnl|UG|Ssc#S35171059	637	183.4	842	240.68	770	231.41	"Sus scrofa mRNA, clone:LNG010017G11, expressed in lung /gb=AK231738 /gi=115548780 /ug=Ssc.769 /len=1160"	GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|74267768|gb|AAI02866.1|/7.05645e-96/RPL13 protein [Bos taurus]
gnl|UG|Ssc#S58308207	0	0	0	0	0	0	"PREDICTED: Sus scrofa CAP, adenylate cyclase-associated protein, 2 (yeast) (CAP2), mRNA /cds=p(416,1876) /gb=XM_003128188 /gi=311259763 /ug=Ssc.5621 /len=3181"	GO:0016020//membrane	GO:0008092//cytoskeletal protein binding	GO:0006996//organelle organization;GO:0006935//chemotaxis;GO:0032989;GO:0023052//signaling;GO:0045762//positive regulation of adenylate cyclase activity	gi|311259764|ref|XP_003128236.1|/0/PREDICTED: adenylyl cyclase-associated protein 2-like [Sus scrofa]
gnl|UG|Ssc#S46879828	47	13.53	17	4.86	38	11.42	"PREDICTED: Sus scrofa RAP1A, member of RAS oncogene family (RAP1A), mRNA /cds=p(190,744) /gb=XM_001928649 /gi=311254593 /ug=Ssc.11026 /len=2120"	GO:0043234//protein complex;GO:0030054//cell junction;GO:0044444//cytoplasmic part	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0031267//small GTPase binding	GO:0015980//energy derivation by oxidation of organic compounds;GO:0007599//hemostasis;GO:0009207;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0030073//insulin secretion;GO:0030010//establishment of cell polarity;GO:0000165//MAPKKK cascade	"gi|149699047|ref|XP_001487982.1|/2.15741e-81/PREDICTED: similar to RAP1A, member of RAS oncogene family [Equus caballus]"
gnl|UG|Ssc#S55326663	54	15.55	6	1.72	61	18.33	"Sus scrofa mRNA, clone:OVRM10035F08, expressed in ovary /gb=AK347988 /gi=288778163 /ug=Ssc.31716 /len=2961"	GO:0032589//neuron projection membrane;GO:0005783//endoplasmic reticulum;GO:0015629//actin cytoskeleton	"GO:0008092//cytoskeletal protein binding;GO:0003774//motor activity;GO:0042623//ATPase activity, coupled;GO:0032559"	-	"gi|297272340|ref|XP_001110356.2|/8.32792e-106/PREDICTED: myosin-Id, partial [Macaca mulatta]"
gnl|UG|Ssc#S58307890	114	32.82	167	47.74	107	32.16	"PREDICTED: Sus scrofa ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) (ARIH1), mRNA /cds=p(31,1080) /gb=XM_003128506 /gi=311260838 /ug=Ssc.27545 /len=1818"	GO:0043234//protein complex;GO:0044424//intracellular part	GO:0046914//transition metal ion binding;GO:0016881//acid-amino acid ligase activity	GO:0019941//modification-dependent protein catabolic process	gi|291402759|ref|XP_002717744.1|/0/PREDICTED: ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 [Oryctolagus cuniculus]
gnl|UG|Ssc#S35166362	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10205G03, expressed in ovary /gb=AK236579 /gi=115553376 /ug=Ssc.4680 /len=3164"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0043009//chordate embryonic development;GO:0007417//central nervous system development;GO:0007166//cell surface receptor linked signaling pathway;GO:0043010//camera-type eye development;GO:0040007//growth	gi|114559927|ref|XP_525221.2|/9.13561e-151/PREDICTED: hypothetical protein [Pan troglodytes]
gnl|UG|Ssc#S35169410	22	6.33	16	4.57	20	6.01	"Sus scrofa mRNA, clone:THY010018B04, expressed in thymus /gb=AK238694 /gi=115550429 /ug=Ssc.4971 /len=1448"	GO:0044429//mitochondrial part	GO:0030554//adenyl nucleotide binding;GO:0042802//identical protein binding	GO:0044267//cellular protein metabolic process;GO:0019222//regulation of metabolic process;GO:0006626//protein targeting to mitochondrion	"gi|77735951|ref|NP_001029673.1|/2.70114e-90/grpE protein homolog 1, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S58301057	3	0.86	3	0.86	4	1.2	"PREDICTED: Sus scrofa UPF3 regulator of nonsense transcripts-like protein B, transcript variant 2 (LOC414433), mRNA /cds=p(63,1514) /gb=XM_003135341 /gi=311276860 /ug=Ssc.22179 /len=2827"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0003723//RNA binding	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0000956//nuclear-transcribed mRNA catabolic process;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent;GO:0006950//response to stress"	gi|311276861|ref|XP_003135389.1|/1.04374e-174/PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Sus scrofa]
gnl|UG|Ssc#S31125925	3	0.86	2	0.57	0	0	"1554278 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY429763 /gi=87231066 /ug=Ssc.86342 /len=695"	-	-	-	gi|194216737|ref|XP_001499649.2|/1.01255e-43/PREDICTED: coiled-coil domain containing 46 isoform 1 [Equus caballus]
gnl|UG|Ssc#S58303994	46	13.24	67	19.15	60	18.03	"PREDICTED: Sus scrofa hypothetical protein LOC100516295 (LOC100516295), mRNA /cds=p(43,687) /gb=XM_003132403 /gi=311269348 /ug=Ssc.56150 /len=1071"	GO:0000785//chromatin;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0034728	gi|114589196|ref|XP_526304.2|/6.8469e-42/PREDICTED: similar to histone H1x [Pan troglodytes]
gnl|UG|Ssc#S58304588	7	2.02	4	1.14	4	1.2	"PREDICTED: Sus scrofa nucleoredoxin-like (LOC100523510), mRNA /cds=p(1,558) /gb=XM_003131814 /gi=311268034 /ug=Ssc.2790 /len=1951"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0016209//antioxidant activity;GO:0016668//oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor"	GO:0032501//multicellular organismal process;GO:0007166//cell surface receptor linked signaling pathway;GO:0008152//metabolic process;GO:0019725//cellular homeostasis;GO:0048869	gi|311268035|ref|XP_003131862.1|/1.49448e-89/PREDICTED: nucleoredoxin-like [Sus scrofa]
gnl|UG|Ssc#S58314527	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa uncharacterized protein C9orf82-like (LOC100511909), mRNA /cds=p(29,1117) /gb=XM_003121874 /gi=311245686 /ug=Ssc.13809 /len=2287"	-	-	-	gi|311245687|ref|XP_003121922.1|/2.96317e-116/PREDICTED: uncharacterized protein C9orf82-like [Sus scrofa]
gnl|UG|Ssc#S55320288	13	3.74	5	1.43	10	3.01	"Sus scrofa mRNA, clone:THY010058E05, expressed in thymus /gb=AK351675 /gi=288784584 /ug=Ssc.94666 /len=2413"	-	-	-	gi|311268025|ref|XP_003131853.1|/6.81854e-95/PREDICTED: hypothetical protein LOC100521749 [Sus scrofa]
gnl|UG|Ssc#S55322775	0	0	0	0	0	0	"Sus scrofa mRNA, clone:TCH010024H08, expressed in trachea /gb=AK350768 /gi=288782097 /ug=Ssc.6884 /len=1081"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|291397234|ref|XP_002715034.1|/9.13998e-127/PREDICTED: parkin co-regulated gene protein [Oryctolagus cuniculus]
gnl|UG|Ssc#S58313063	15	4.32	9	2.57	8	2.4	"PREDICTED: Sus scrofa TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae) (TRMT1), mRNA /cds=p(125,2032) /gb=XM_003123336 /gi=311248933 /ug=Ssc.44873 /len=2061"	-	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0008170//N-methyltransferase activity	GO:0006399//tRNA metabolic process	"gi|311248934|ref|XP_003123384.1|/0/PREDICTED: N(2),N(2)-dimethylguanosine tRNA methyltransferase-like [Sus scrofa]"
gnl|UG|Ssc#S35166316	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10209B10, expressed in ovary /gb=AK236625 /gi=115553422 /ug=Ssc.24976 /len=1675"	-	-	-	-
gnl|UG|Ssc#S58309299	6	1.73	0	0	0	0	"PREDICTED: Sus scrofa zinc finger protein 91-like (LOC100512415), mRNA /cds=p(141,3146) /gb=XM_003127098 /gi=311257490 /ug=Ssc.14079 /len=3157"	-	-	-	gi|311257491|ref|XP_003127146.1|/0/PREDICTED: zinc finger protein 91-like [Sus scrofa]
gnl|UG|Ssc#S58312741	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa protein FAM193B-like (LOC100511495), mRNA /cds=p(81,2789) /gb=XM_003123675 /gi=311249588 /ug=Ssc.6459 /len=2789"	-	-	-	gi|311249589|ref|XP_003123723.1|/0/PREDICTED: protein FAM193B-like [Sus scrofa]
gnl|UG|Ssc#S46878740	145	41.75	59	16.87	88	26.45	"PREDICTED: Sus scrofa pyruvate kinase, muscle, transcript variant 1 (PKM2), mRNA /cds=p(262,1857) /gb=XM_001929069 /gi=311260851 /ug=Ssc.9425 /len=2480"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0031420;GO:0016301//kinase activity;GO:0032559	GO:0008219//cell death;GO:0006796//phosphate metabolic process;GO:0006007//glucose catabolic process	gi|194038728|ref|XP_001929104.1|/0/PREDICTED: pyruvate kinase isozymes M1/M2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S52898482	158	45.49	53	15.15	127	38.17	"Sus scrofa Kruppel-like factor 13 (KLF13) mRNA, complete cds /cds=p(331,1209) /gb=GQ274321 /gi=254036301 /ug=Ssc.94324 /len=6818"	GO:0044464//cell part	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0046872//metal ion binding	GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|254036302|gb|ACT56535.1|/2.25872e-88/Kruppel-like factor 13 [Sus scrofa]
gnl|UG|Ssc#S55322194	9	2.59	3	0.86	8	2.4	"Sus scrofa mRNA, clone:DCI010109C06, expressed in dendritic cells (immature) /gb=AK344689 /gi=288782678 /ug=Ssc.77064 /len=3244"	GO:0000323//lytic vacuole	GO:0016790//thiolester hydrolase activity;GO:0019783//small conjugating protein-specific protease activity;GO:0001664//G-protein-coupled receptor binding	GO:0010608//posttranscriptional regulation of gene expression;GO:0019941//modification-dependent protein catabolic process;GO:0016567//protein ubiquitination;GO:0034613//cellular protein localization;GO:0070646	"gi|73985807|ref|XP_533829.2|/0/PREDICTED: similar to ubiquitin specific protease, proto-oncogene isoform a [Canis familiaris]"
gnl|UG|Ssc#S55322263	29	8.35	143	40.88	26	7.81	"Sus scrofa mRNA, clone:DCI010087D05, expressed in dendritic cells (immature) /gb=AK344620 /gi=288782609 /ug=Ssc.81525 /len=1804"	GO:0016604//nuclear body;GO:0016585//chromatin remodeling complex	GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0019899//enzyme binding	GO:0006396//RNA processing;GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|301769723|ref|XP_002920279.1|/8.47987e-108/PREDICTED: corepressor interacting with RBPJ 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58313398	8	2.3	28	8	18	5.41	"PREDICTED: Sus scrofa RNA-binding protein MEX3D-like (LOC100512764), mRNA /cds=p(1,1893) /gb=XM_003123013 /gi=311248256 /ug=Ssc.25092 /len=2716"	-	GO:0005488//binding	-	gi|311248257|ref|XP_003123061.1|/0/PREDICTED: RNA-binding protein MEX3D-like [Sus scrofa]
gnl|UG|Ssc#S33578950	93	26.78	80	22.87	506	152.07	"Sus scrofa GTP-binding RAS-like protein 3 (DIRAS3) mRNA, complete cds /cds=p(382,1068) /gb=DQ529283 /gi=108795318 /ug=Ssc.2155 /len=1735"	GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	"GO:0035556//intracellular signal transduction;GO:0051726//regulation of cell cycle;GO:0040029//regulation of gene expression, epigenetic;GO:0009207"	gi|113205842|ref|NP_001038063.1|/5.0376e-118/GTP-binding protein Di-Ras3 [Sus scrofa]
gnl|UG|Ssc#S58311801	0	0	0	0	0	0	"PREDICTED: Sus scrofa dexamethasone-induced protein-like (LOC100519361), mRNA /cds=p(491,778) /gb=XM_003124598 /gi=311251513 /ug=Ssc.709 /len=1560"	-	-	-	gi|301129278|ref|NP_001180322.1|/1.35429e-34/dexamethasone-induced protein [Macaca mulatta] 
gnl|UG|Ssc#S58311030	34	9.79	5	1.43	51	15.33	"PREDICTED: Sus scrofa structural maintenance of chromosomes 6 (SMC6), mRNA /cds=p(188,3481) /gb=XM_003125342 /gi=311253093 /ug=Ssc.24148 /len=5320"	GO:0043232;GO:0043231//intracellular membrane-bounded organelle	GO:0032559	GO:0006259//DNA metabolic process;GO:0033554//cellular response to stress	gi|311253094|ref|XP_003125390.1|/0/PREDICTED: structural maintenance of chromosomes protein 6-like [Sus scrofa]
gnl|UG|Ssc#S35172763	6	1.73	5	1.43	17	5.11	"Sus scrofa mRNA, clone:AMP010097B02, expressed in alveolar macrophage /gb=AK231127 /gi=115547072 /ug=Ssc.52001 /len=1633"	GO:0043231//intracellular membrane-bounded organelle	GO:0051536//iron-sulfur cluster binding;GO:0000166//nucleotide binding	GO:0010257;GO:0007005//mitochondrion organization	gi|194038799|ref|XP_001925166.1|/1.69577e-51/PREDICTED: iron-sulfur protein NUBPL [Sus scrofa]
gnl|UG|Ssc#S55320486	91	26.2	119	34.02	98	29.45	"Sus scrofa mRNA, clone:LVR010004B09, expressed in liver /gb=AK345802 /gi=288784386 /ug=Ssc.16312 /len=3141"	-	-	-	-
gnl|UG|Ssc#S58313046	11	3.17	2	0.57	0	0	"PREDICTED: Sus scrofa DDB1- and CUL4-associated factor 15-like (LOC100511246), mRNA /cds=p(1,1803) /gb=XM_003123350 /gi=311248967 /ug=Ssc.17957 /len=2276"	-	-	-	gi|311248968|ref|XP_003123398.1|/0/PREDICTED: DDB1- and CUL4-associated factor 15-like [Sus scrofa]
gnl|UG|Ssc#S50170414	3	0.86	0	0	0	0	"susfleck_LV_3_A05 SUSFLECK Liver Sus scrofa cDNA clone 3_A05, mRNA sequence /clone=3_A05 /gb=FD602250 /gi=221023778 /ug=Ssc.95779 /len=628"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	"GO:0006351//transcription, DNA-dependent"	gi|296211796|ref|XP_002752562.1|/4.98531e-25/PREDICTED: zinc finger protein 740-like [Callithrix jacchus]
gnl|UG|Ssc#S55319848	9	2.59	0	0	0	0	"Sus scrofa mRNA, clone:THY010110A10, expressed in thymus /gb=AK351917 /gi=288785036 /ug=Ssc.7442 /len=4294"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0005488//binding	GO:0016073	gi|115496890|ref|NP_001069512.1|/0/integrator complex subunit 7 [Bos taurus]
gnl|UG|Ssc#S55321338	90	25.91	34	9.72	118	35.46	"Sus scrofa mRNA, clone:ITT010069H07, expressed in small intestine /gb=AK345149 /gi=288783534 /ug=Ssc.944 /len=2058"	GO:0034399//nuclear periphery;GO:0044444//cytoplasmic part;GO:0012505//endomembrane system;GO:0005882//intermediate filament	GO:0005488//binding	GO:0006915//apoptosis;GO:0006606//protein import into nucleus;GO:0007569//cell aging;GO:0055013//cardiac muscle cell development;GO:0006997//nucleus organization	gi|74220666|dbj|BAE31539.1|/0/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S58301069	4	1.15	3	0.86	6	1.8	"PREDICTED: Sus scrofa malignant T cell-amplified sequence 1-like (LOC100511797), mRNA /cds=p(1,525) /gb=XM_003135327 /gi=311276831 /ug=Ssc.90457 /len=647"	GO:0044424//intracellular part	GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent;GO:0008283//cell proliferation;GO:0033554//cellular response to stress;GO:0050789//regulation of biological process"	gi|7662502|ref|NP_054779.1|/9.49091e-99/malignant T cell-amplified sequence 1 isoform 1 [Homo sapiens]
gnl|UG|Ssc#S55322214	0	0	0	0	0	0	"Sus scrofa mRNA, clone:DCI010101C03, expressed in dendritic cells (immature) /gb=AK344669 /gi=288782658 /ug=Ssc.93678 /len=1690"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0030234//enzyme regulator activity	"GO:0014020;GO:0016055//Wnt receptor signaling pathway;GO:0001667//ameboidal cell migration;GO:0009952//anterior/posterior pattern formation;GO:0006355//regulation of transcription, DNA-dependent;GO:0021543//pallium development;GO:0043406//positive regulation of MAP kinase activity"	gi|301760450|ref|XP_002916018.1|/0/PREDICTED: LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35164934	0	0	9	2.57	2	0.6	"Sus scrofa mRNA, clone:LVRM10185B10, expressed in liver /gb=AK233604 /gi=115554792 /ug=Ssc.5242 /len=1809"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0005488//binding;GO:0004857//enzyme inhibitor activity	GO:0000165//MAPKKK cascade	gi|156120835|ref|NP_001095564.1|/0/COP9 signalosome complex subunit 1 [Bos taurus]
gnl|UG|Ssc#S58315281	109	31.38	30	8.58	64	19.23	"PREDICTED: Sus scrofa AT rich interactive domain 1B (SWI1-like) (ARID1B), mRNA /cds=p(1,4068) /gb=XM_003121125 /gi=311243737 /ug=Ssc.27166 /len=5689"	GO:0031981//nuclear lumen;GO:0070603//SWI/SNF-type complex	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding	GO:0048731;GO:0006338//chromatin remodeling	gi|311243738|ref|XP_003121173.1|/0/PREDICTED: LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B [Sus scrofa]
gnl|UG|Ssc#S55319982	0	0	7	2	8	2.4	"Sus scrofa mRNA, clone:LVRM10052H01, expressed in liver /gb=AK346108 /gi=288784902 /ug=Ssc.51885 /len=2163"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0043169//cation binding;GO:0017169//CDP-alcohol phosphatidyltransferase activity	GO:0046469//platelet activating factor metabolic process;GO:0006656//phosphatidylcholine biosynthetic process	"gi|119618079|gb|EAW97673.1|/1.78015e-22/choline phosphotransferase 1, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S58314427	6	1.73	11	3.14	2	0.6	"PREDICTED: Sus scrofa transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila), transcript variant 3 (TLE1), mRNA /cds=p(84,2408) /gb=XM_003121975 /gi=311245953 /ug=Ssc.18454 /len=2885"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	GO:0016055//Wnt receptor signaling pathway;GO:0032501//multicellular organismal process;GO:0009653//anatomical structure morphogenesis	gi|311245954|ref|XP_003122023.1|/0/PREDICTED: transducin-like enhancer protein 1-like isoform 3 [Sus scrofa]
gnl|UG|Ssc#S40084072	27	7.77	20	5.72	69	20.74	"rfcc23b_n24.y1 fcc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW178979 /gi=182594015 /ug=Ssc.54807 /len=641"	-	-	-	gi|300872546|gb|ADK39026.1|/8.30323e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S46880528	0	0	0	0	0	0	"PREDICTED: Sus scrofa stAR-related lipid transfer protein 6-like (LOC100157201), mRNA /cds=p(246,926) /gb=XM_001925011 /gi=311244550 /ug=Ssc.21797 /len=942"	-	GO:0015248//sterol transporter activity;GO:0032934//sterol binding	GO:0051234//establishment of localization;GO:0010876	gi|194035004|ref|XP_001925046.1|/6.01798e-121/PREDICTED: stAR-related lipid transfer protein 6-like [Sus scrofa]
gnl|UG|Ssc#S55325269	0	0	0	0	0	0	"Sus scrofa mRNA, clone:PTG010059F04, expressed in pituitary gland /gb=AK349382 /gi=288779557 /ug=Ssc.47206 /len=1903"	GO:0044447//axoneme part;GO:0005813//centrosome	GO:0005198//structural molecule activity	GO:0007281//germ cell development;GO:0048232//male gamete generation	gi|73967876|ref|XP_861598.1|/7.28625e-33/PREDICTED: similar to outer dense fiber of sperm tails 2 isoform 4 [Canis familiaris]
gnl|UG|Ssc#S46880490	19	5.47	24	6.86	49	14.73	"PREDICTED: Sus scrofa ring finger protein 111, transcript variant 3 (RNF111), mRNA /cds=p(334,3288) /gb=XM_001928818 /gi=311244654 /ug=Ssc.28174 /len=4817"	GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination;GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0007275//multicellular organismal development	gi|311244655|ref|XP_001928853.2|/0/PREDICTED: e3 ubiquitin-protein ligase Arkadia isoform 3 [Sus scrofa]
gnl|UG|Ssc#S6083709	0	0	0	0	3	0.9	"MI-P-NA-aes-c-12-1-UM.s1 MI-P-NA Sus scrofa cDNA clone MI-P-NA-aes-c-12-1-UM 3', mRNA sequence /clone=MI-P-NA-aes-c-12-1-UM /clone_end=3' /gb=BQ602944 /gi=21549670 /ug=Ssc.13627 /len=505"	-	-	-	-
gnl|UG|Ssc#S41576860	2	0.58	0	0	0	0	"PIC-B-1130 Sus Scrofa Adipocyte Zap Express Library Before differentiation Sus scrofa cDNA clone SS-AB-4-2a-T3_G12, mRNA sequence /clone=SS-AB-4-2a-T3_G12 /gb=EH007745 /gi=161441454 /ug=Ssc.81831 /len=577"	GO:0031981//nuclear lumen;GO:0005819//spindle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0003712//transcription cofactor activity;GO:0043565//sequence-specific DNA binding	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0016055//Wnt receptor signaling pathway;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0006629//lipid metabolic process;GO:0006325//chromatin organization	gi|297679112|ref|XP_002817389.1|/5.58204e-14/PREDICTED: hypothetical protein LOC100454428 [Pongo abelii]
gnl|UG|Ssc#S40479798	0	0	2	0.57	0	0	"rspc032_d4.y1 spc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW574404 /gi=183146651 /ug=Ssc.69509 /len=455"	-	-	-	-
gnl|UG|Ssc#S58304870	126	36.28	153	43.73	142	42.67	"PREDICTED: Sus scrofa importin subunit beta-1-like (LOC100518449), mRNA /cds=p(309,2939) /gb=XM_003131528 /gi=311267447 /ug=Ssc.12008 /len=6695"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0005635//nuclear envelope	GO:0022892;GO:0005048//signal sequence binding;GO:0046914//transition metal ion binding;GO:0005515//protein binding	"GO:0006915//apoptosis;GO:0051704;GO:0022415;GO:0006606//protein import into nucleus;GO:0000737//DNA catabolic process, endonucleolytic"	gi|311267448|ref|XP_003131576.1|/0/PREDICTED: importin subunit beta-1-like [Sus scrofa]
gnl|UG|Ssc#S46880872	4	1.15	6	1.72	0	0	"PREDICTED: Sus scrofa ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B), transcript variant 1 (ELAVL2), mRNA /cds=p(16,1095) /gb=XM_001924582 /gi=311245694 /ug=Ssc.4923 /len=3525"	-	GO:0003729//mRNA binding	"GO:0006351//transcription, DNA-dependent"	gi|301763026|ref|XP_002916933.1|/0/PREDICTED: ELAV-like protein 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35171851	245	70.54	37	10.58	202	60.71	"Sus scrofa mRNA, clone:TCH010021G07, expressed in trachea /gb=AK237968 /gi=115547984 /ug=Ssc.29314 /len=2259"	GO:0043234//protein complex;GO:0005624//membrane fraction;GO:0044444//cytoplasmic part;GO:0043025//neuronal cell body;GO:0016020//membrane	GO:0046872//metal ion binding;GO:0042802//identical protein binding;GO:0046983//protein dimerization activity;GO:0016836//hydro-lyase activity	GO:0006007//glucose catabolic process;GO:0043627//response to estrogen stimulus	gi|296211236|ref|XP_002752315.1|/0/PREDICTED: gamma-enolase [Callithrix jacchus]
gnl|UG|Ssc#S35168935	0	0	3	0.86	3	0.9	"Sus scrofa mRNA, clone:OVRM10126A03, expressed in ovary /gb=AK235923 /gi=115550848 /ug=Ssc.5334 /len=1657"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0006743//ubiquinone metabolic process	"gi|40789233|ref|NP_064708.1|/1.63235e-134/ubiquinone biosynthesis protein COQ9, mitochondrial precursor [Homo sapiens]"
gnl|UG|Ssc#S58312397	50	14.4	42	12.01	69	20.74	"PREDICTED: Sus scrofa steroid receptor RNA activator 1-like (LOC100513784), mRNA /cds=p(1,852) /gb=XM_003124013 /gi=311250296 /ug=Ssc.6344 /len=1082"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0003676//nucleic acid binding;GO:0004871//signal transducer activity;GO:0005102//receptor binding;GO:0003713//transcription coactivator activity;GO:0030546//receptor activator activity	GO:0012501//programmed cell death;GO:0048869;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0010469//regulation of receptor activity	gi|311250297|ref|XP_003124061.1|/1.7673e-154/PREDICTED: steroid receptor RNA activator 1-like [Sus scrofa]
gnl|UG|Ssc#S35171205	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LNG010002B06, expressed in lung /gb=AK231618 /gi=115548634 /ug=Ssc.2008 /len=1964"	GO:0044432//endoplasmic reticulum part	GO:0008194//UDP-glycosyltransferase activity	-	gi|109033215|ref|XP_001109371.1|/0/PREDICTED: KTEL motif-containing protein 1-like [Macaca mulatta]
gnl|UG|Ssc#S58313470	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa transmembrane protein 86A-like (LOC100523718), mRNA /cds=p(171,893) /gb=XM_003122930 /gi=311248108 /ug=Ssc.17965 /len=2028"	GO:0031224//intrinsic to membrane	-	-	gi|311248109|ref|XP_003122978.1|/3.45906e-121/PREDICTED: transmembrane protein 86A-like [Sus scrofa]
gnl|UG|Ssc#S55322718	45	12.96	27	7.72	129	38.77	"Sus scrofa mRNA, clone:DCI010024G05, expressed in dendritic cells (immature) /gb=AK344365 /gi=288782154 /ug=Ssc.56635 /len=2501"	GO:0005769//early endosome;GO:0030286//dynein complex	GO:0005543//phospholipid binding	GO:0016197//endosome transport	gi|296226048|ref|XP_002758762.1|/0/PREDICTED: sorting nexin-4 [Callithrix jacchus]
gnl|UG|Ssc#S23213297	11	3.17	4	1.14	11	3.31	"Sus scrofa clone Clu_27154.scr.msk.p1.Contig1, mRNA sequence /gb=AY609711 /gi=52351279 /ug=Ssc.81872 /len=1144"	GO:0012505//endomembrane system;GO:0044431//Golgi apparatus part	GO:0017111//nucleoside-triphosphatase activity;GO:0043169//cation binding;GO:0030234//enzyme regulator activity;GO:0032561	GO:0016192//vesicle-mediated transport;GO:0035556//intracellular signal transduction;GO:0006996//organelle organization;GO:0009207	gi|291389799|ref|XP_002711336.1|/4.34328e-90/PREDICTED: ADP-ribosylation factor-like 1-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S18349462	39	11.23	3	0.86	20	6.01	"Sus scrofa stearoyl-CoA desaturase (SCD) mRNA, complete cds /cds=p(177,1256) /gb=AY487829 /gi=40549307 /ug=Ssc.16159 /len=5134"	-	-	-	-
gnl|UG|Ssc#S17518157	11	3.17	6	1.72	19	5.71	"BX672727 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0042.a.20 5prim, mRNA sequence /clone=scac0042.a.20 /clone_end=5' /gb=BX672727 /gi=90236745 /ug=Ssc.4221 /len=824"	GO:0030137//COPI-coated vesicle;GO:0030120//vesicle coat	-	GO:0048200;GO:0015031//protein transport	"gi|297462558|ref|XP_001788413.2|/1.68031e-89/PREDICTED: coatomer protein complex, subunit zeta 2-like [Bos taurus]"
gnl|UG|Ssc#S46879557	24	6.91	13	3.72	20	6.01	"PREDICTED: Sus scrofa UPF0551 protein C8orf38 homolog, mitochondrial-like (LOC100152224), mRNA /cds=p(1,1002) /gb=XM_001925041 /gi=194037029 /ug=Ssc.25108 /len=1016"	GO:0043231//intracellular membrane-bounded organelle	GO:0003824//catalytic activity	GO:0008152//metabolic process	"gi|194037030|ref|XP_001925076.1|/6.91667e-166/PREDICTED: UPF0551 protein C8orf38 homolog, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35165093	10	2.88	7	2	5	1.5	"Sus scrofa mRNA, clone:PBL010082H02, expressed in periphral blood mononuclear cell /gb=AK237044 /gi=115554633 /ug=Ssc.19293 /len=2658"	GO:0031981//nuclear lumen	GO:0019787//small conjugating protein ligase activity;GO:0032559	GO:0032446//protein modification by small protein conjugation;GO:0012501//programmed cell death	"gi|148684062|gb|EDL16009.1|/1.47391e-138/ubiquitin-conjugating enzyme E2Z (putative), isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S58306254	12	3.45	9	2.57	21	6.31	"PREDICTED: Sus scrofa cyclin-dependent kinase 6 (CDK6), mRNA /cds=p(509,1489) /gb=XM_003130142 /gi=311264488 /ug=Ssc.25289 /len=2463"	GO:0031981//nuclear lumen;GO:0031252//cell leading edge;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0005515//protein binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0032844;GO:0042221//response to chemical stimulus;GO:0045596//negative regulation of cell differentiation;GO:0001952//regulation of cell-matrix adhesion;GO:0010467//gene expression;GO:0051707//response to other organism;GO:0043696;GO:0048534;GO:0006796//phosphate metabolic process;GO:0051320;GO:0008285//negative regulation of cell proliferation;GO:0023052//signaling;GO:0051318//G1 phase;GO:0008284//positive regulation of cell proliferation;GO:0051726//regulation of cell cycle;GO:0006464//protein modification process;GO:0022008//neurogenesis	gi|311264489|ref|XP_003130190.1|/0/PREDICTED: cell division protein kinase 6-like [Sus scrofa]
gnl|UG|Ssc#S46881054	22	6.33	11	3.14	22	6.61	"PREDICTED: Sus scrofa UDP-glucose ceramide glucosyltransferase (UGCG), mRNA /cds=p(422,1606) /gb=XM_001925267 /gi=311246215 /ug=Ssc.27550 /len=1915"	GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0012505//endomembrane system	GO:0035251//UDP-glucosyltransferase activity	GO:0009888//tissue development;GO:0006678//glucosylceramide metabolic process;GO:0032501//multicellular organismal process	gi|311246216|ref|XP_001925302.2|/0/PREDICTED: ceramide glucosyltransferase-like [Sus scrofa]
gnl|UG|Ssc#S58308338	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa kinesin family member 2C, transcript variant 1 (KIF2C), mRNA /cds=p(119,2290) /gb=XM_003128056 /gi=311259453 /ug=Ssc.2154 /len=2859"	GO:0005875//microtubule associated complex;GO:0043231//intracellular membrane-bounded organelle;GO:0005874//microtubule;GO:0000776//kinetochore;GO:0044444//cytoplasmic part	GO:0008017//microtubule binding;GO:0043565//sequence-specific DNA binding;GO:0003774//motor activity;GO:0032559	GO:0031109//microtubule polymerization or depolymerization;GO:0007067//mitosis;GO:0007599//hemostasis;GO:0050794//regulation of cellular process	gi|311259454|ref|XP_003128104.1|/0/PREDICTED: kinesin-like protein KIF2C-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58312607	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa tetratricopeptide repeat domain 37 (TTC37), mRNA /cds=p(1,1371) /gb=XM_003123795 /gi=311249862 /ug=Ssc.2435 /len=2109"	-	-	-	gi|311249863|ref|XP_003123843.1|/0/PREDICTED: tetratricopeptide repeat protein 37-like [Sus scrofa]
gnl|UG|Ssc#S46881071	11	3.17	15	4.29	6	1.8	"PREDICTED: Sus scrofa choline transporter-like protein 1-like (LOC100152140), mRNA /cds=p(1,2286) /gb=XM_001925140 /gi=311246163 /ug=Ssc.22077 /len=4836"	GO:0031224//intrinsic to membrane;GO:0031966//mitochondrial membrane	GO:0005275//amine transmembrane transporter activity	GO:0015697//quaternary ammonium group transport	gi|311246164|ref|XP_001925175.2|/0/PREDICTED: choline transporter-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35166542	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LVRM10064D11, expressed in liver /gb=AK232994 /gi=115553196 /ug=Ssc.1555 /len=2125"	GO:0031981//nuclear lumen;GO:0005624//membrane fraction;GO:0043234//protein complex	GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0003702//RNA polymerase II transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0043566//structure-specific DNA binding;GO:0046332//SMAD binding	GO:0048731;GO:0009605//response to external stimulus;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0051592//response to calcium ion;GO:0006305;GO:0000302//response to reactive oxygen species;GO:0051384//response to glucocorticoid stimulus;GO:0007610//behavior;GO:0002224//toll-like receptor signaling pathway;GO:0007154//cell communication;GO:0009314//response to radiation;GO:0002237//response to molecule of bacterial origin;GO:0022414//reproductive process;GO:0000165//MAPKKK cascade	gi|178057282|ref|NP_001116585.1|/3.60826e-161/proto-oncogene c-Fos [Sus scrofa]
gnl|UG|Ssc#S55326685	213	61.32	321	91.76	82	24.64	"Sus scrofa mRNA, clone:OVRM10030H09, expressed in ovary /gb=AK347966 /gi=288778141 /ug=Ssc.9241 /len=1811"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	"GO:0000245//spliceosome assembly;GO:0006405//RNA export from nucleus;GO:0006353//transcription termination, DNA-dependent"	gi|62087532|dbj|BAD92213.1|/9.78916e-88/arginine/serine-rich splicing factor 6 variant [Homo sapiens]
gnl|UG|Ssc#S46877832	33	9.5	14	4	26	7.81	"PREDICTED: Sus scrofa chronic lymphocytic leukemia deletion region gene 6 protein homolog (LOC100155063), mRNA /cds=p(203,793) /gb=XM_001928485 /gi=311266229 /ug=Ssc.38591 /len=1477"	-	-	-	gi|194040604|ref|XP_001928520.1|/4.7066e-114/PREDICTED: chronic lymphocytic leukemia deletion region gene 6 protein homolog [Sus scrofa]
gnl|UG|Ssc#S58304800	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa MBT domain-containing protein 1-like (LOC100518511), mRNA /cds=p(1,1623) /gb=XM_003131599 /gi=311267594 /ug=Ssc.94683 /len=1623"	-	GO:0046872//metal ion binding	GO:0009987//cellular process	gi|311267595|ref|XP_003131647.1|/0/PREDICTED: MBT domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55321098	15	4.32	0	0	11	3.31	"Sus scrofa mRNA, clone:LNG010019F01, expressed in lung /gb=AK345389 /gi=288783774 /ug=Ssc.14458 /len=1382"	GO:0043231//intracellular membrane-bounded organelle	"GO:0003676//nucleic acid binding;GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0006260//DNA replication;GO:0006464//protein modification process;GO:0009653//anatomical structure morphogenesis;GO:0006796//phosphate metabolic process;GO:0051320	gi|297747340|ref|NP_001177095.1|/1.95588e-58/cyclin-dependent kinase 2-associated protein 1 [Sus scrofa]
gnl|UG|Ssc#S35166254	2	0.58	0	0	6	1.8	"Sus scrofa mRNA, clone:OVRM10215D11, expressed in ovary /gb=AK236687 /gi=115553484 /ug=Ssc.31951 /len=1900"	GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0042254//ribosome biogenesis	gi|297700421|ref|XP_002827261.1|/3.80475e-21/PREDICTED: 60S ribosomal protein L35a-like [Pongo abelii]
gnl|UG|Ssc#S58302795	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa partitioning defective 3 homolog B-like (LOC100515588), mRNA /cds=p(1,2670) /gb=XM_003133601 /gi=311272929 /ug=Ssc.41738 /len=2670"	GO:0043296//apical junction complex	-	GO:0009987//cellular process	gi|311272930|ref|XP_003133649.1|/0/PREDICTED: partitioning defective 3 homolog B-like [Sus scrofa]
gnl|UG|Ssc#S35169067	4	1.15	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10120B10, expressed in ovary /gb=AK235847 /gi=115550772 /ug=Ssc.3560 /len=1415"	-	-	-	gi|301766792|ref|XP_002918814.1|/1.87475e-88/PREDICTED: UPF0687 protein C20orf27-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35164852	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LVRM10205G05, expressed in liver /gb=AK233686 /gi=115554874 /ug=Ssc.2496 /len=2305"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0006325//chromatin organization;GO:0010467//gene expression	gi|194040300|ref|XP_001927916.1|/0/PREDICTED: PHD finger protein 1 [Sus scrofa]
gnl|UG|Ssc#S35171699	19	5.47	34	9.72	12	3.61	"Sus scrofa mRNA, clone:TCH010047B12, expressed in trachea /gb=AK238120 /gi=115548136 /ug=Ssc.39250 /len=1642"	GO:0044421//extracellular region part	GO:0032934//sterol binding	GO:0050789//regulation of biological process;GO:0002455//humoral immune response mediated by circulating immunoglobulin	gi|148645276|gb|ABR01162.1|/7.24359e-18/endonuclease/reverse transcriptase [Sus scrofa]
gnl|UG|Ssc#S46878737	6	1.73	2	0.57	21	6.31	"PREDICTED: Sus scrofa Sec23 homolog A (S. cerevisiae), transcript variant 2 (SEC23A), mRNA /cds=p(169,2466) /gb=XM_001929191 /gi=311260853 /ug=Ssc.8623 /len=4146"	GO:0012507//ER to Golgi transport vesicle membrane;GO:0005789//endoplasmic reticulum membrane	GO:0046914//transition metal ion binding	GO:0006901//vesicle coating;GO:0048193//Golgi vesicle transport;GO:0015031//protein transport;GO:0006487//protein N-linked glycosylation	gi|194038734|ref|XP_001929226.1|/0/PREDICTED: protein transport protein Sec23A-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58309698	59	16.99	31	8.86	35	10.52	"PREDICTED: Sus scrofa lamina-associated polypeptide 2, isoforms beta/gamma-like (LOC100512350), mRNA /cds=p(237,1601) /gb=XM_003126696 /gi=311256653 /ug=Ssc.5645 /len=3595"	GO:0031224//intrinsic to membrane;GO:0044427;GO:0019866//organelle inner membrane;GO:0005635//nuclear envelope	GO:0003676//nucleic acid binding;GO:0005515//protein binding	"GO:0006998//nuclear envelope organization;GO:0006351//transcription, DNA-dependent"	"gi|311256654|ref|XP_003126744.1|/0/PREDICTED: LOW QUALITY PROTEIN: lamina-associated polypeptide 2, isoforms beta/gamma-like [Sus scrofa]"
gnl|UG|Ssc#S58301848	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa 5'-AMP-activated protein kinase subunit gamma-2-like (LOC100515868), mRNA /cds=p(553,2265) /gb=XM_003134545 /gi=311275141 /ug=Ssc.3067 /len=3361"	-	-	-	-
gnl|UG|Ssc#S58314557	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa protein phosphatase, Mg2+/Mn2+ dependent, 1A (PPM1A), mRNA /cds=p(1,2358) /gb=XM_003121844 /gi=311245611 /ug=Ssc.95805 /len=2358"	GO:0043231//intracellular membrane-bounded organelle	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0048704//embryonic skeletal system morphogenesis;GO:0042471//ear morphogenesis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0022008//neurogenesis;GO:0048534;GO:0014706//striated muscle tissue development;GO:0043066//negative regulation of apoptosis;GO:0014812//muscle cell migration	gi|311245612|ref|XP_003121892.1|/0/PREDICTED: homeobox protein SIX4 [Sus scrofa]
gnl|UG|Ssc#S58311044	36	10.36	19	5.43	32	9.62	"PREDICTED: Sus scrofa pumilio homolog 2 (Drosophila), transcript variant 1 (PUM2), mRNA /cds=p(124,3306) /gb=XM_003125374 /gi=311253065 /ug=Ssc.56111 /len=6422"	-	GO:0003676//nucleic acid binding	-	gi|311253066|ref|XP_003125422.1|/0/PREDICTED: pumilio homolog 2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55325698	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:PBL010077H02, expressed in peripheral blood mononuclear cells /gb=AK348953 /gi=288779128 /ug=Ssc.76777 /len=1451"	GO:0016604//nuclear body	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	GO:0000082//G1/S transition of mitotic cell cycle;GO:0010467//gene expression	gi|194212652|ref|XP_001917323.1|/5.34257e-164/PREDICTED: similar to NPAT [Equus caballus]
gnl|UG|Ssc#S58304104	58	16.7	16	4.57	46	13.82	"PREDICTED: Sus scrofa THO complex subunit 7 homolog (LOC100519334), mRNA /cds=p(125,736) /gb=XM_003132293 /gi=311269098 /ug=Ssc.41516 /len=1664"	GO:0000346//transcription export complex	GO:0003676//nucleic acid binding	GO:0006406//mRNA export from nucleus;GO:0006396//RNA processing	gi|311269099|ref|XP_003132341.1|/2.1671e-94/PREDICTED: THO complex subunit 7 homolog [Sus scrofa]
gnl|UG|Ssc#S27600150	14	4.03	6	1.72	9	2.7	"EST-AR153A10 Porcine Peripheral Blood Cell cDNA library Sus scrofa cDNA clone AR153A10, mRNA sequence /clone=AR153A10 /gb=DV225477 /gi=77592165 /ug=Ssc.57285 /len=743"	-	-	-	-
gnl|UG|Ssc#S58312460	15	4.32	5	1.43	6	1.8	"PREDICTED: Sus scrofa hypothetical protein LOC100513343 (LOC100513343), mRNA /cds=p(1,630) /gb=XM_003123947 /gi=311250162 /ug=Ssc.25152 /len=880"	-	-	-	gi|311250163|ref|XP_003123995.1|/8.15077e-93/PREDICTED: hypothetical protein LOC100513343 [Sus scrofa]
gnl|UG|Ssc#S20936505	0	0	0	0	3	0.9	"AJ648228 CSEQRAN19 Sus scrofa cDNA clone C0003264_A07, mRNA sequence /clone=C0003264_A07 /gb=AJ648228 /gi=49325073 /ug=Ssc.85527 /len=512"	GO:0000785//chromatin;GO:0000228//nuclear chromosome	GO:0003676//nucleic acid binding	GO:0032501//multicellular organismal process;GO:0034728	gi|311275809|ref|XP_003134922.1|/1.15508e-53/PREDICTED: histone H2A.V-like [Sus scrofa]
gnl|UG|Ssc#S23762727	2	0.58	9	2.57	2	0.6	"1120360 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN120346 /gi=59814621 /ug=Ssc.80017 /len=839"	-	-	-	"gi|160332360|sp|P48818.3|ACADV_BOVIN/8.39084e-68/RecName: Full=Very long-chain specific acyl-CoA dehydrogenase, mitochondrial; Short=VLCAD; Flags: Precursor"
gnl|UG|Ssc#S58310627	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa zinc finger protein 687 (ZNF687), mRNA /cds=p(1,3717) /gb=XM_003125767 /gi=311254335 /ug=Ssc.27922 /len=4003"	GO:0031981//nuclear lumen	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding	-	gi|311254336|ref|XP_003125815.1|/0/PREDICTED: zinc finger protein 687-like [Sus scrofa]
gnl|UG|Ssc#S35167549	206	59.31	331	94.62	76	22.84	"Sus scrofa mRNA, clone:AMP010003C09, expressed in alveolar macrophage /gb=AK230499 /gi=115552190 /ug=Ssc.56138 /len=2035"	GO:0005769//early endosome;GO:0031090//organelle membrane	GO:0005543//phospholipid binding;GO:0022892	GO:0016192//vesicle-mediated transport;GO:0015031//protein transport	gi|296485576|gb|DAA27691.1|/0/sorting nexin-2 [Bos taurus]
gnl|UG|Ssc#S23212489	0	0	0	0	0	0	"Sus scrofa clone Clu_22104.scr.msk.p1.Contig2, mRNA sequence /gb=AY609632 /gi=52352712 /ug=Ssc.6193 /len=1410"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0032561	GO:0035556//intracellular signal transduction;GO:0006810//transport;GO:0044248//cellular catabolic process	gi|57085169|ref|XP_536420.1|/1.25627e-99/PREDICTED: similar to Ras-related protein Rab-24 [Canis familiaris]
gnl|UG|Ssc#S58301491	13	3.74	13	3.72	24	7.21	"PREDICTED: Sus scrofa cyclin-dependent kinase 13 (CDK13), mRNA /cds=p(1,3186) /gb=XM_003134905 /gi=311275871 /ug=Ssc.8382 /len=5353"	GO:0016604//nuclear body;GO:0000307//cyclin-dependent protein kinase holoenzyme complex	GO:0004674//protein serine/threonine kinase activity;GO:0032559	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0048534;GO:0007067//mitosis;GO:0000398//nuclear mRNA splicing, via spliceosome;GO:0008283//cell proliferation"	gi|311275872|ref|XP_003134953.1|/0/PREDICTED: cell division protein kinase 13-like [Sus scrofa]
gnl|UG|Ssc#S55321161	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LNG010003B05, expressed in lung /gb=AK345326 /gi=288783711 /ug=Ssc.30861 /len=1322"	GO:0044424//intracellular part	GO:0003677//DNA binding	"GO:0006351//transcription, DNA-dependent;GO:0048562//embryonic organ morphogenesis;GO:0014706//striated muscle tissue development;GO:0008283//cell proliferation;GO:0045927//positive regulation of growth;GO:0045623//negative regulation of T-helper cell differentiation;GO:0045624"	gi|155371925|ref|NP_001094567.1|/4.19452e-111/H2.0-like homeobox protein [Bos taurus]
gnl|UG|Ssc#S23249674	3	0.86	0	0	11	3.31	"Sus scrofa mRNA for dystrophin variant Dp427 (dmd gene) /cds=p(194,11218) /gb=AJ865385 /gi=58416121 /ug=Ssc.42754 /len=11470"	GO:0043231//intracellular membrane-bounded organelle;GO:0016323//basolateral plasma membrane;GO:0044463;GO:0031674//I band;GO:0043234//protein complex;GO:0042598//vesicular fraction	GO:0046914//transition metal ion binding;GO:0005198//structural molecule activity;GO:0005102//receptor binding;GO:0008092//cytoskeletal protein binding;GO:0001948//glycoprotein binding;GO:0019904//protein domain specific binding;GO:0019899//enzyme binding	"GO:0006351//transcription, DNA-dependent;GO:0014706//striated muscle tissue development;GO:0006518//peptide metabolic process;GO:0006936//muscle contraction;GO:0048513//organ development;GO:0021604;GO:0019725//cellular homeostasis;GO:0048858//cell projection morphogenesis;GO:0043112//receptor metabolic process"	gi|60097959|ref|NP_001012408.1|/0/dystrophin [Sus scrofa]
gnl|UG|Ssc#S55325536	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:PTG010001B06, expressed in pituitary gland /gb=AK349115 /gi=288779290 /ug=Ssc.42011 /len=3269"	GO:0005856//cytoskeleton;GO:0019897//extrinsic to plasma membrane;GO:0009925//basal plasma membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0005913//cell-cell adherens junction;GO:0000267//cell fraction;GO:0031674//I band;GO:0071664//catenin-TCF7L2 complex	GO:0005198//structural molecule activity;GO:0003712//transcription cofactor activity;GO:0019900//kinase binding;GO:0050839//cell adhesion molecule binding;GO:0019902//phosphatase binding;GO:0042802//identical protein binding;GO:0003702//RNA polymerase II transcription factor activity	GO:0030177//positive regulation of Wnt receptor signaling pathway;GO:0007010//cytoskeleton organization;GO:0009612//response to mechanical stimulus;GO:0032989;GO:0048870//cell motility;GO:0003306//Wnt receptor signaling pathway involved in heart development;GO:0090136//epithelial cell-cell adhesion;GO:0002009//morphogenesis of an epithelium;GO:0008544//epidermis development;GO:0003171;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0006606//protein import into nucleus;GO:0003129;GO:0007281//germ cell development;GO:0007043//cell-cell junction assembly;GO:0071310//cellular response to organic substance;GO:0051259//protein oligomerization;GO:0048598//embryonic morphogenesis;GO:0043388//positive regulation of DNA binding	gi|47523712|ref|NP_999488.1|/0/junction plakoglobin [Sus scrofa]
gnl|UG|Ssc#S58308668	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa mitogen-activated protein kinase kinase kinase 6 (MAP3K6), mRNA /cds=p(1,3888) /gb=XM_003127728 /gi=311258779 /ug=Ssc.29172 /len=4109"	-	GO:0046872//metal ion binding;GO:0032559;GO:0004702//receptor signaling protein serine/threonine kinase activity	GO:0000187//activation of MAPK activity	gi|311258780|ref|XP_003127776.1|/0/PREDICTED: mitogen-activated protein kinase kinase kinase 6-like [Sus scrofa]
gnl|UG|Ssc#S58307005	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa DENN domain-containing protein 5A-like (LOC100519964), mRNA /cds=p(1,3828) /gb=XM_003129393 /gi=311262968 /ug=Ssc.13879 /len=3859"	GO:0043231//intracellular membrane-bounded organelle	GO:0005083//small GTPase regulator activity;GO:0005488//binding	-	gi|311262969|ref|XP_003129441.1|/0/PREDICTED: DENN domain-containing protein 5A-like [Sus scrofa]
gnl|UG|Ssc#S35167742	8	2.3	6	1.72	12	3.61	"Sus scrofa mRNA, clone:THY010071G12, expressed in thymus /gb=AK239190 /gi=115551997 /ug=Ssc.19519 /len=2482"	-	-	GO:0016192//vesicle-mediated transport	gi|47847438|dbj|BAD21391.1|/0/mFLJ00157 protein [Mus musculus]
gnl|UG|Ssc#S40122833	5	1.44	0	0	0	0	"rfty504b_f3r1.y1 fty Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW217740 /gi=182496981 /ug=Ssc.68063 /len=526"	-	-	-	-
gnl|UG|Ssc#S55327281	320	92.13	120	34.3	179	53.79	"Sus scrofa mRNA, clone:OVR010018C11, expressed in ovary /gb=AK347368 /gi=288576775 /ug=Ssc.16837 /len=2312"	-	-	-	-
gnl|UG|Ssc#S58309451	6	1.73	32	9.15	19	5.71	"PREDICTED: Sus scrofa cadherin-11-like (LOC100525579), mRNA /cds=p(301,2691) /gb=XM_003126948 /gi=311257181 /ug=Ssc.18466 /len=5939"	GO:0031224//intrinsic to membrane;GO:0044424//intracellular part	GO:0046872//metal ion binding	GO:0048731;GO:0016337//cell-cell adhesion;GO:0045216//cell-cell junction organization	gi|311257182|ref|XP_003126996.1|/0/PREDICTED: cadherin-11-like [Sus scrofa]
gnl|UG|Ssc#S58313453	18	5.18	54	15.44	6	1.8	"PREDICTED: Sus scrofa harmonin-like (LOC100514274), mRNA /cds=p(73,2871) /gb=XM_003122957 /gi=311248142 /ug=Ssc.48311 /len=2871"	GO:0005902//microvillus;GO:0044424//intracellular part;GO:0031513//nonmotile primary cilium;GO:0016020//membrane	GO:0005488//binding	GO:0050905//neuromuscular process;GO:0042471//ear morphogenesis;GO:0050954//sensory perception of mechanical stimulus;GO:0060113//inner ear receptor cell differentiation;GO:0051017//actin filament bundle assembly;GO:0043954//cellular component maintenance	gi|311248143|ref|XP_003123005.1|/0/PREDICTED: harmonin-like [Sus scrofa]
gnl|UG|Ssc#S18297283	0	0	0	0	0	0	"BP149008 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRM10072D04 5', mRNA sequence /clone=OVRM10072D04 /clone_end=5' /gb=BP149008 /gi=40398479 /ug=Ssc.51896 /len=721"	-	-	-	-
gnl|UG|Ssc#S58305628	113	32.53	87	24.87	122	36.66	"PREDICTED: Sus scrofa Rho GTPase activating protein 21 (ARHGAP21), mRNA /cds=p(203,6070) /gb=XM_003130770 /gi=311265776 /ug=Ssc.37636 /len=6878"	GO:0043231//intracellular membrane-bounded organelle;GO:0044459//plasma membrane part;GO:0043232;GO:0012506//vesicle membrane	GO:0008047//enzyme activator activity;GO:0005488//binding	GO:0043087//regulation of GTPase activity;GO:0023052//signaling	gi|311265777|ref|XP_003130818.1|/0/PREDICTED: rho GTPase-activating protein 21-like [Sus scrofa]
gnl|UG|Ssc#S58312467	45	12.96	39	11.15	45	13.52	"PREDICTED: Sus scrofa hypothetical protein LOC100524672 (LOC100524672), mRNA /cds=p(11,520) /gb=XM_003123930 /gi=311250148 /ug=Ssc.5923 /len=1351"	-	GO:0046914//transition metal ion binding	-	gi|311250149|ref|XP_003123978.1|/2.75703e-33/PREDICTED: hypothetical protein LOC100524672 [Sus scrofa]
gnl|UG|Ssc#S58301845	62	17.85	101	28.87	74	22.24	"PREDICTED: Sus scrofa chondroitin polymerizing factor 2 (CHPF2), mRNA /cds=p(418,2736) /gb=XM_003134551 /gi=311275147 /ug=Ssc.25397 /len=2882"	GO:0000139//Golgi membrane;GO:0031224//intrinsic to membrane	GO:0015020//glucuronosyltransferase activity	-	gi|311275148|ref|XP_003134599.1|/0/PREDICTED: chondroitin sulfate glucuronyltransferase-like [Sus scrofa]
gnl|UG|Ssc#S58305650	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa FERM domain-containing protein 4A-like (LOC100513617), mRNA /cds=p(250,1845) /gb=XM_003130749 /gi=311265732 /ug=Ssc.76314 /len=1845"	GO:0044424//intracellular part	-	-	gi|311265733|ref|XP_003130797.1|/0/PREDICTED: FERM domain-containing protein 4A-like [Sus scrofa]
gnl|UG|Ssc#S55320044	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:LVRM10020B02, expressed in liver /gb=AK346046 /gi=288784828 /ug=Ssc.11731 /len=3929"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0048037//cofactor binding;GO:0016597//amino acid binding;GO:0046983//protein dimerization activity;GO:0046872//metal ion binding;GO:0032559;GO:0016881//acid-amino acid ligase activity	GO:0003018;GO:0000096//sulfur amino acid metabolic process;GO:0006767//water-soluble vitamin metabolic process;GO:0003254//regulation of membrane depolarization;GO:0009064//glutamine family amino acid metabolic process;GO:0016567//protein ubiquitination;GO:0031331;GO:0010035//response to inorganic substance;GO:0006749//glutathione metabolic process;GO:0009719;GO:0006950//response to stress;GO:0043066//negative regulation of apoptosis	gi|311260209|ref|XP_003128383.1|/0/PREDICTED: glutamate--cysteine ligase catalytic subunit-like [Sus scrofa]
gnl|UG|Ssc#S35166397	4	1.15	9	2.57	3	0.9	"Sus scrofa mRNA, clone:LVRM10088A03, expressed in liver /gb=AK233139 /gi=115553341 /ug=Ssc.5615 /len=3336"	GO:0031966//mitochondrial membrane;GO:0031981//nuclear lumen	GO:0004396//hexokinase activity;GO:0032559	GO:0006007//glucose catabolic process;GO:0008645//hexose transport	gi|60592784|ref|NP_001012686.1|/0/hexokinase 1 [Bos taurus]
gnl|UG|Ssc#S55324396	24	6.91	49	14.01	23	6.91	"Sus scrofa mRNA, clone:SMG010031B10, expressed in submaxillary gland /gb=AK350010 /gi=288780476 /ug=Ssc.41247 /len=1894"	GO:0031379//RNA-directed RNA polymerase complex;GO:0043231//intracellular membrane-bounded organelle	GO:0070566//adenylyltransferase activity;GO:0032559	GO:0031123//RNA 3'-end processing;GO:0000956//nuclear-transcribed mRNA catabolic process	gi|311249764|ref|XP_003123800.1|/0/PREDICTED: poly(A) RNA polymerase GLD2-like [Sus scrofa]
gnl|UG|Ssc#S58303799	35	10.08	7	2	39	11.72	"PREDICTED: Sus scrofa dynamin-like 120 kDa protein, mitochondrial-like (LOC100522705), mRNA /cds=p(1,2766) /gb=XM_003132598 /gi=311269803 /ug=Ssc.22431 /len=2766"	GO:0043005//neuron projection;GO:0005743//mitochondrial inner membrane;GO:0031224//intrinsic to membrane	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0046872//metal ion binding	GO:0014020;GO:0006944//cellular membrane fusion;GO:0050953//sensory perception of light stimulus;GO:0009207;GO:0008088//axon cargo transport;GO:0045767//regulation of anti-apoptosis;GO:0007006//mitochondrial membrane organization	"gi|311269804|ref|XP_003132646.1|/0/PREDICTED: dynamin-like 120 kDa protein, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35167600	60	17.27	16	4.57	75	22.54	"Sus scrofa mRNA, clone:THY010093H09, expressed in thymus /gb=AK239332 /gi=115552139 /ug=Ssc.43660 /len=2125"	GO:0044444//cytoplasmic part;GO:0005635//nuclear envelope	GO:0031072//heat shock protein binding;GO:0003676//nucleic acid binding;GO:0032182//small conjugating protein binding	"GO:0006259//DNA metabolic process;GO:0006355//regulation of transcription, DNA-dependent;GO:0051319;GO:0006458//'de novo' protein folding;GO:0006325//chromatin organization"	gi|311264701|ref|XP_003130290.1|/7.24023e-146/PREDICTED: dnaJ homolog subfamily C member 2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35171228	29	8.35	4	1.14	23	6.91	"Sus scrofa mRNA, clone:ITT010103F05, expressed in intestine /gb=AK231595 /gi=115548611 /ug=Ssc.9752 /len=1337"	GO:0005768//endosome;GO:0031090//organelle membrane	GO:0019902//phosphatase binding;GO:0035091//phosphatidylinositol binding	GO:0016192//vesicle-mediated transport	gi|4507143|ref|NP_003786.1|/5.98951e-89/sorting nexin-3 isoform a [Homo sapiens]
gnl|UG|Ssc#S40026942	5	1.44	0	0	0	0	"reli1138b_n13r1.y1 eli Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW121850 /gi=182487501 /ug=Ssc.91169 /len=557"	GO:0005743//mitochondrial inner membrane;GO:0031224//intrinsic to membrane;GO:0045202//synapse	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0051018//protein kinase A binding;GO:0003676//nucleic acid binding;GO:0019903//protein phosphatase binding;GO:0015631//tubulin binding;GO:0019900//kinase binding"	GO:0042992//negative regulation of transcription factor import into nucleus;GO:0007599//hemostasis;GO:0032868//response to insulin stimulus;GO:0003300//cardiac muscle hypertrophy;GO:0010627//regulation of intracellular protein kinase cascade;GO:0006470//protein dephosphorylation	"gi|301759653|ref|XP_002915685.1|/2.10269e-92/PREDICTED: a-kinase anchor protein 1, mitochondrial-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S46877157	12	3.45	7	2	2	0.6	"PREDICTED: Sus scrofa structural maintenance of chromosomes 3 (SMC3), mRNA /cds=p(132,3785) /gb=XM_001926579 /gi=311271827 /ug=Ssc.6358 /len=4124"	GO:0034399//nuclear periphery;GO:0005819//spindle;GO:0000795//synaptonemal complex;GO:0005578//proteinaceous extracellular matrix;GO:0008278//cohesin complex	GO:0046983//protein dimerization activity;GO:0032559;GO:0003774//motor activity	GO:0009292//genetic transfer;GO:0023052//signaling;GO:0007067//mitosis;GO:0007059//chromosome segregation;GO:0033554//cellular response to stress;GO:0010948;GO:0006260//DNA replication	gi|42627759|tpe|CAD59554.1|/0/TPA: SMC3 protein [Bos taurus]
gnl|UG|Ssc#S46880957	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase BRE1A-like (LOC100154259), mRNA /cds=p(156,3083) /gb=XM_001926594 /gi=311246135 /ug=Ssc.7445 /len=4001"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003712//transcription cofactor activity;GO:0046914//transition metal ion binding;GO:0019899//enzyme binding;GO:0019787//small conjugating protein ligase activity	"GO:0016477//cell migration;GO:0006355//regulation of transcription, DNA-dependent;GO:0016574//histone ubiquitination;GO:0019941//modification-dependent protein catabolic process;GO:0006513//protein monoubiquitination"	gi|311246136|ref|XP_001926629.2|/0/PREDICTED: e3 ubiquitin-protein ligase BRE1A-like [Sus scrofa]
gnl|UG|Ssc#S58305797	105	30.23	114	32.59	89	26.75	"PREDICTED: Sus scrofa zinc finger protein 281-like (LOC100523859), mRNA /cds=p(1,2613) /gb=XM_003130601 /gi=311265426 /ug=Ssc.18012 /len=5138"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0003702//RNA polymerase II transcription factor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|311265427|ref|XP_003130649.1|/0/PREDICTED: zinc finger protein 281-like [Sus scrofa]
gnl|UG|Ssc#S39777741	0	0	3	0.86	0	0	"rpbfe0121_d18.y1 bfe Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV873019 /gi=178643852 /ug=Ssc.85894 /len=436"	GO:0043234//protein complex	-	GO:0016192//vesicle-mediated transport	gi|301759349|ref|XP_002915524.1|/1.73789e-72/PREDICTED: LOW QUALITY PROTEIN: WASH complex subunit 7-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55326367	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10116F10, expressed in ovary /gb=AK348284 /gi=288778459 /ug=Ssc.59839 /len=2453"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|301754934|ref|XP_002913384.1|/0/PREDICTED: zinc finger protein 436-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S33346434	21	6.05	18	5.15	5	1.5	"Sus scrofa monocyte to macrophage differentiation protein (MMD) mRNA, complete cds /cds=p(92,808) /gb=DQ656344 /gi=107098520 /ug=Ssc.53992 /len=1727"	GO:0005770//late endosome;GO:0005764//lysosome;GO:0016021//integral to membrane;GO:0005626//insoluble fraction	GO:0004871//signal transducer activity	GO:0008219//cell death;GO:0023052//signaling	gi|113205824|ref|NP_001038060.1|/6.48944e-142/monocyte to macrophage differentiation protein [Sus scrofa]
gnl|UG|Ssc#S27599826	15	4.32	11	3.14	10	3.01	"EST-AR175C07 Infected Porcine Peripheral Blood Cell cDNA library Sus scrofa cDNA clone AR175C07, mRNA sequence /clone=AR175C07 /gb=DV225153 /gi=77591589 /ug=Ssc.46798 /len=702"	GO:0031224//intrinsic to membrane	-	-	gi|116004139|ref|NP_001070429.1|/9.99237e-39/chromosome 4 open reading frame 32 [Bos taurus]
gnl|UG|Ssc#S58304484	11	3.17	2	0.57	12	3.61	"PREDICTED: Sus scrofa misshapen-like kinase 1-like (LOC100515409), mRNA /cds=p(1,4548) /gb=XM_003131921 /gi=311268245 /ug=Ssc.16696 /len=5294"	-	-	-	-
gnl|UG|Ssc#S46877277	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa cyclin J (CCNJ), mRNA /cds=p(166,1317) /gb=XM_001928033 /gi=311271680 /ug=Ssc.30222 /len=1317"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311271681|ref|XP_001928068.2|/0/PREDICTED: cyclin-J [Sus scrofa]
gnl|UG|Ssc#S58314189	18	5.18	43	12.29	8	2.4	"PREDICTED: Sus scrofa endonuclease G, mitochondrial-like (LOC100514888), mRNA /cds=p(90,989) /gb=XM_003122208 /gi=311246576 /ug=Ssc.79126 /len=1055"	-	-	-	-
gnl|UG|Ssc#S46877552	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa three prime repair exonuclease 1-like (LOC100155669), mRNA /cds=p(649,1593) /gb=XM_001926785 /gi=311268861 /ug=Ssc.12795 /len=1798"	GO:0043231//intracellular membrane-bounded organelle;GO:0012505//endomembrane system	"GO:0043169//cation binding;GO:0030554//adenyl nucleotide binding;GO:0042802//identical protein binding;GO:0008408//3'-5' exonuclease activity;GO:0032404;GO:0016895//exodeoxyribonuclease activity, producing 5'-phosphomonoesters;GO:0043566//structure-specific DNA binding"	GO:0006281//DNA repair;GO:0035456	gi|194041195|ref|XP_001926820.1|/5.39727e-155/PREDICTED: three prime repair exonuclease 1-like [Sus scrofa]
gnl|UG|Ssc#S58307574	6	1.73	3	0.86	5	1.5	"PREDICTED: Sus scrofa major facilitator superfamily domain-containing protein 10-like (LOC100519496), mRNA /cds=p(75,1445) /gb=XM_003128828 /gi=311261805 /ug=Ssc.34800 /len=2315"	-	GO:0042895//antibiotic transporter activity	GO:0015850//organic alcohol transport	gi|311261806|ref|XP_003128876.1|/5.59042e-163/PREDICTED: major facilitator superfamily domain-containing protein 10-like [Sus scrofa]
gnl|UG|Ssc#S58305686	2	0.58	6	1.72	0	0	"PREDICTED: Sus scrofa zinc finger E-box binding homeobox 1 (ZEB1), mRNA /cds=p(6,1892) /gb=XM_003130713 /gi=311265656 /ug=Ssc.44315 /len=1892"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0002376//immune system process	gi|311265657|ref|XP_003130761.1|/0/PREDICTED: zinc finger E-box-binding homeobox 1-like [Sus scrofa]
gnl|UG|Ssc#S46876623	0	0	0	0	0	0	"PREDICTED: Sus scrofa coronin, actin binding protein, 1C (CORO1C), mRNA /cds=p(107,1531) /gb=XM_001929345 /gi=311270808 /ug=Ssc.26358 /len=2817"	GO:0005856//cytoskeleton	GO:0003779//actin binding	GO:0030866//cortical actin cytoskeleton organization;GO:0023052//signaling;GO:0006897//endocytosis	"gi|62089404|dbj|BAD93146.1|/0/coronin, actin binding protein, 1C variant [Homo sapiens]"
gnl|UG|Ssc#S55326244	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:OVRM10155E08, expressed in ovary /gb=AK348407 /gi=288778582 /ug=Ssc.31438 /len=3593"	-	-	-	-
gnl|UG|Ssc#S55322335	3	0.86	3	0.86	5	1.5	"Sus scrofa mRNA, clone:DCI010072F08, expressed in dendritic cells (immature) /gb=AK344548 /gi=288782537 /ug=Ssc.82368 /len=1531"	GO:0032991//macromolecular complex	GO:0032561	-	gi|115497240|ref|NP_001068740.1|/4.09976e-161/GPN-loop GTPase 3 [Bos taurus]
gnl|UG|Ssc#S58309441	58	16.7	47	13.43	52	15.63	"PREDICTED: Sus scrofa casein kinase 2, alpha prime polypeptide (CSNK2A2), mRNA /cds=p(12,1064) /gb=XM_003126957 /gi=311257202 /ug=Ssc.4909 /len=1527"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0005515//protein binding;GO:0032559	GO:0007049//cell cycle;GO:0006796//phosphate metabolic process;GO:0006935//chemotaxis;GO:0007166//cell surface receptor linked signaling pathway;GO:0006464//protein modification process	gi|311257203|ref|XP_003127005.1|/0/PREDICTED: casein kinase II subunit alpha'-like [Sus scrofa]
gnl|UG|Ssc#S55320824	57	16.41	48	13.72	39	11.72	"Sus scrofa mRNA, clone:LNG010083B04, expressed in lung /gb=AK345663 /gi=288784048 /ug=Ssc.44015 /len=2320"	-	GO:0046872//metal ion binding	GO:0050794//regulation of cellular process	gi|291396455|ref|XP_002714575.1|/2.54342e-178/PREDICTED: stromal membrane-associated GTPase-activating protein 1 isoform 1 [Oryctolagus cuniculus]
gnl|UG|Ssc#S58311288	24	6.91	33	9.43	37	11.12	"PREDICTED: Sus scrofa poly(A) polymerase gamma-like (LOC100523547), mRNA /cds=p(236,2461) /gb=XM_003125108 /gi=311252568 /ug=Ssc.62549 /len=3770"	GO:0043231//intracellular membrane-bounded organelle	GO:0070566//adenylyltransferase activity;GO:0003676//nucleic acid binding;GO:0032559	GO:0031123//RNA 3'-end processing	gi|311252569|ref|XP_003125156.1|/0/PREDICTED: poly(A) polymerase gamma-like [Sus scrofa]
gnl|UG|Ssc#S40475306	60	17.27	44	12.58	58	17.43	"rspc001_i22.y1 spc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW569912 /gi=183131016 /ug=Ssc.64631 /len=663"	-	-	-	-
gnl|UG|Ssc#S55308525	104	29.94	78	22.3	104	31.25	"FS716864 full-length enriched swine cDNA library, adult submaxillary gland Sus scrofa cDNA clone SMG010041E02 5', mRNA sequence /clone=SMG010041E02 /clone_end=5' /gb=FS716864 /gi=288311961 /ug=Ssc.95859 /len=298"	-	-	-	gi|119628534|gb|EAX08129.1|/1.31983e-27/hCG2038166 [Homo sapiens]
gnl|UG|Ssc#S55321814	0	0	0	0	0	0	"Sus scrofa mRNA, clone:ITT010004A03, expressed in small intestine /gb=AK344871 /gi=288783058 /ug=Ssc.1856 /len=1963"	GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part	GO:0005488//binding;GO:0016408	GO:0009062//fatty acid catabolic process;GO:0006732//coenzyme metabolic process;GO:0043066//negative regulation of apoptosis;GO:0008203//cholesterol metabolic process	"gi|264681430|ref|NP_001161110.1|/0/3-ketoacyl-CoA thiolase, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S35170015	0	0	0	0	0	0	"Sus scrofa mRNA, clone:TES010037F06, expressed in testis /gb=AK238484 /gi=115549824 /ug=Ssc.81977 /len=2436"	GO:0031224//intrinsic to membrane	-	-	gi|73956524|ref|XP_546712.2|/0/PREDICTED: similar to matrix-remodelling associated 8 [Canis familiaris]
gnl|UG|Ssc#S55326603	3	0.86	3	0.86	0	0	"Sus scrofa mRNA, clone:OVRM10053A04, expressed in ovary /gb=AK348048 /gi=288778223 /ug=Ssc.26319 /len=2859"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity;GO:0032182//small conjugating protein binding	GO:0009314//response to radiation;GO:0006282//regulation of DNA repair;GO:0033522//histone H2A ubiquitination	gi|149731515|ref|XP_001501246.1|/0/PREDICTED: ring finger protein 168 [Equus caballus]
gnl|UG|Ssc#S46877888	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa DNA-directed RNA polymerases I and III subunit RPAC2-like (LOC100153350), mRNA /cds=p(204,605) /gb=XM_001926913 /gi=311266057 /ug=Ssc.28092 /len=808"	GO:0044452	GO:0034062//RNA polymerase activity;GO:0003676//nucleic acid binding;GO:0005515//protein binding	"GO:0006352//transcription initiation, DNA-dependent;GO:0006354//transcription elongation, DNA-dependent;GO:0006353//transcription termination, DNA-dependent"	gi|194040486|ref|XP_001926948.1|/1.16041e-71/PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Sus scrofa]
gnl|UG|Ssc#S34495185	3	0.86	2	0.57	6	1.8	"DB808812 full-length enriched swine cDNA library, adult liver Sus scrofa cDNA 3', mRNA sequence /clone=LVRM10013A07 /clone_end=3' /gb=DB808812 /gi=112749763 /ug=Ssc.83871 /len=738"	-	-	-	-
gnl|UG|Ssc#S46880264	111	31.96	105	30.01	79	23.74	"PREDICTED: Sus scrofa differentiation enhancing factor 1 (LOC100153066), partial mRNA /cds=p(1,3119) /gb=XM_001924535 /gi=311253372 /ug=Ssc.15114 /len=5797"	-	-	-	-
gnl|UG|Ssc#S46881024	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa PHD finger protein 19-like (LOC100156643), mRNA /cds=p(1,1965) /gb=XM_001925577 /gi=311246300 /ug=Ssc.38388 /len=1965"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	GO:0010467//gene expression	gi|311246301|ref|XP_001925612.2|/0/PREDICTED: PHD finger protein 19-like [Sus scrofa]
gnl|UG|Ssc#S39945170	0	0	0	0	2	0.6	"rpigcf0_003376.y1 ctl Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW040235 /gi=181332629 /ug=Ssc.66499 /len=195"	-	-	-	-
gnl|UG|Ssc#S35173226	57	16.41	8	2.29	23	6.91	"Sus scrofa mRNA, clone:OVR010063B05, expressed in ovary /gb=AK234447 /gi=115546609 /ug=Ssc.21434 /len=3562"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	"GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0000377;GO:0009207	gi|73949523|ref|XP_849676.1|/0/PREDICTED: similar to Superkiller viralicidic activity 2-like 2 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S50200843	0	0	0	0	2	0.6	"susfleck_FC_N_10_C06 SUSFLECK Fat Cell Normalized Sus scrofa cDNA clone 10_C06, mRNA sequence /clone=10_C06 /gb=FD632679 /gi=220986386 /ug=Ssc.74454 /len=945"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0035258//steroid hormone receptor binding;GO:0019787//small conjugating protein ligase activity	GO:0030278//regulation of ossification;GO:0033144//negative regulation of steroid hormone receptor signaling pathway;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0032446//protein modification by small protein conjugation	gi|297275264|ref|XP_001085456.2|/1.09251e-154/PREDICTED: e3 SUMO-protein ligase PIAS2 isoform 4 [Macaca mulatta]
gnl|UG|Ssc#S35168451	2	0.58	4	1.14	3	0.9	"Sus scrofa mRNA, clone:LVRM10002C06, expressed in liver /gb=AK232672 /gi=115551239 /ug=Ssc.10317 /len=2950"	GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|73989467|ref|XP_542658.2|/0/PREDICTED: similar to basic, immunoglobulin-like variable motif containing [Canis familiaris]"
gnl|UG|Ssc#S55319432	132	38	130	37.16	79	23.74	"Sus scrofa mRNA, clone:UTR010011B10, expressed in uterus /gb=AK352134 /gi=288785452 /ug=Ssc.37197 /len=2458"	-	-	-	-
gnl|UG|Ssc#S58309402	75	21.59	86	24.58	44	13.22	"PREDICTED: Sus scrofa glutamic pyruvate transaminase (alanine aminotransferase) 2 (GPT2), mRNA /cds=p(1,1572) /gb=XM_003126995 /gi=311257283 /ug=Ssc.27024 /len=2034"	GO:0044429//mitochondrial part	GO:0048037//cofactor binding;GO:0047635	GO:0006522//alanine metabolic process;GO:0043648//dicarboxylic acid metabolic process	gi|311257284|ref|XP_003127043.1|/0/PREDICTED: alanine aminotransferase 2-like [Sus scrofa]
gnl|UG|Ssc#S55318420	35	10.08	54	15.44	14	4.21	"Sus scrofa mRNA, clone:MLN010079F03, expressed in mesenteric lymph nodes /gb=AK346946 /gi=288786464 /ug=Ssc.57787 /len=1029"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0030016//myofibril;GO:0012505//endomembrane system	GO:0032561;GO:0004871//signal transducer activity;GO:0017111//nucleoside-triphosphatase activity	GO:0030003//cellular cation homeostasis;GO:0048200;GO:0009207;GO:0050688//regulation of defense response to virus;GO:0035556//intracellular signal transduction	gi|297262255|ref|XP_001104802.2|/3.58393e-103/PREDICTED: ADP-ribosylation factor 3-like isoform 3 [Macaca mulatta]
gnl|UG|Ssc#S58304604	15	4.32	4	1.14	11	3.31	"PREDICTED: Sus scrofa coronin-6-like (LOC100516758), mRNA /cds=p(19,780) /gb=XM_003131783 /gi=311268002 /ug=Ssc.49604 /len=795"	-	GO:0003779//actin binding	GO:0007010//cytoskeleton organization	gi|149724132|ref|XP_001504274.1|/1.26964e-147/PREDICTED: coronin 6 [Equus caballus]
gnl|UG|Ssc#S58309783	3	0.86	0	0	5	1.5	"PREDICTED: Sus scrofa periphilin-1-like (LOC100522617), mRNA /cds=p(1,1185) /gb=XM_003126616 /gi=311256459 /ug=Ssc.10527 /len=3356"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0030216//keratinocyte differentiation	gi|311256460|ref|XP_003126664.1|/0/PREDICTED: periphilin-1-like [Sus scrofa]
gnl|UG|Ssc#S29970782	7	2.02	2	0.57	0	0	"PDUts1043A07 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1043A07 5' similar to homologue to ref|NM_007111.3| Homo sapiens transcription factor Dp-1 (TFDP1), mRNA, mRNA sequence /clone=PDUts1043A07 /clone_end=5' /gb=CV867440 /gi=84121400 /ug=Ssc.88186 /len=460"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	"GO:0012501//programmed cell death;GO:0009888//tissue development;GO:0006355//regulation of transcription, DNA-dependent;GO:0051320;GO:0051318//G1 phase"	gi|115496726|ref|NP_001069497.1|/2.98312e-59/transcription factor Dp-1 [Bos taurus]
gnl|UG|Ssc#S35167806	103	29.65	190	54.31	91	27.35	"Sus scrofa mRNA, clone:OVRM10183B04, expressed in ovary /gb=AK236340 /gi=115551933 /ug=Ssc.13475 /len=2286"	-	-	-	gi|26345526|dbj|BAC36414.1|/1.24644e-13/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S35169157	0	0	3	0.86	4	1.2	"Sus scrofa mRNA, clone:LVR010059D06, expressed in liver /gb=AK232512 /gi=115550682 /ug=Ssc.1918 /len=2077"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	GO:0006412//translation	gi|301768967|ref|XP_002919887.1|/6.74838e-104/PREDICTED: MIF4G domain-containing protein-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35723868	8	2.3	2	0.57	2	0.6	"Sus scrofa RAP80 mRNA for retinoid x receptor interacting protein, complete cds /cds=p(166,2331) /gb=AB248750 /gi=118596066 /ug=Ssc.5212 /len=2594"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0031593//polyubiquitin binding;GO:0042974//retinoic acid receptor binding	"GO:0009314//response to radiation;GO:0006282//regulation of DNA repair;GO:0006355//regulation of transcription, DNA-dependent;GO:0016578//histone deubiquitination;GO:0000077//DNA damage checkpoint"	gi|148232728|ref|NP_001090916.1|/0/BRCA1-A complex subunit RAP80 [Sus scrofa]
gnl|UG|Ssc#S27599523	8	2.3	4	1.14	5	1.5	"EST-AR111B08 Infected Porcine Spleen cDNA library Sus scrofa cDNA clone AR111B08, mRNA sequence /clone=AR111B08 /gb=DV224850 /gi=77591011 /ug=Ssc.87124 /len=725"	-	-	-	gi|297298988|ref|XP_001097950.2|/1.96247e-101/PREDICTED: pericentriolar material 1 protein isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S58302712	3	0.86	2	0.57	3	0.9	"PREDICTED: Sus scrofa protein FAM124B-like (LOC100511600), partial mRNA /cds=p(278,1345) /gb=XM_003133684 /gi=311273137 /ug=Ssc.94240 /len=1345"	-	-	-	"gi|311273138|ref|XP_003133732.1|/0/PREDICTED: protein FAM124B-like, partial [Sus scrofa]"
gnl|UG|Ssc#S31134009	0	0	2	0.57	0	0	"1574070 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY437847 /gi=87239150 /ug=Ssc.32641 /len=599"	-	-	-	gi|311260553|ref|XP_001928389.2|/1.1568e-73/PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55320145	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:LVR010067H04, expressed in liver /gb=AK345945 /gi=288784727 /ug=Ssc.41395 /len=2598"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0031090//organelle membrane;GO:0044444//cytoplasmic part	"GO:0030528//transcription regulator activity;GO:0016879//ligase activity, forming carbon-nitrogen bonds;GO:0005488//binding"	GO:0050851//antigen receptor-mediated signaling pathway;GO:0051091//positive regulation of transcription factor activity;GO:0002224//toll-like receptor signaling pathway;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0016567//protein ubiquitination;GO:0048869;GO:0006281//DNA repair	"gi|311275031|ref|XP_003134549.1|/9.72094e-95/PREDICTED: transmembrane protein 189-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58314636	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa uveal autoantigen with coiled-coil domains and ankyrin repeats-like (LOC100153651), mRNA /cds=p(77,4204) /gb=XM_003121768 /gi=311245394 /ug=Ssc.76428 /len=4204"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	-	-	gi|311245395|ref|XP_003121816.1|/0/PREDICTED: LOW QUALITY PROTEIN: uveal autoantigen with coiled-coil domains and ankyrin repeats-like [Sus scrofa]
gnl|UG|Ssc#S22274839	2	0.58	0	0	0	0	"CJ011200 full-length enriched swine cDNA library, adult mesenteric lymph node Sus scrofa cDNA clone MLN01D100045 5', mRNA sequence /clone=MLN01D100045 /clone_end=5' /gb=CJ011200 /gi=54504787 /ug=Ssc.55360 /len=866"	GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity;GO:0005515//protein binding	GO:0006935//chemotaxis;GO:0032501//multicellular organismal process;GO:0009987//cellular process;GO:0023052//signaling	gi|300794940|ref|NP_001179410.1|/1.98323e-27/plexin-C1 [Bos taurus]
gnl|UG|Ssc#S35165554	6	1.73	12	3.43	4	1.2	"Sus scrofa mRNA, clone:UTR010016F03, expressed in uterus /gb=AK239967 /gi=115554172 /ug=Ssc.4531 /len=1704"	GO:0043231//intracellular membrane-bounded organelle	GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0000080//G1 phase of mitotic cell cycle;GO:0006464//protein modification process;GO:0008283//cell proliferation	gi|219521978|ref|NP_001137176.1|/0/cell division protein kinase 10 [Sus scrofa]
gnl|UG|Ssc#S55326770	180	51.82	342	97.76	116	34.86	"Sus scrofa mRNA, clone:OVRM10010F09, expressed in ovary /gb=AK347881 /gi=288778056 /ug=Ssc.5869 /len=2574"	GO:0005681//spliceosomal complex;GO:0016604//nuclear body;GO:0044444//cytoplasmic part	-	"GO:0006917//induction of apoptosis;GO:0022402//cell cycle process;GO:0045582//positive regulation of T cell differentiation;GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|311247262|ref|XP_003122565.1|/0/PREDICTED: u4/U6.U5 tri-snRNP-associated protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35165229	3	0.86	0	0	3	0.9	"Sus scrofa mRNA, clone:LVRM10162A10, expressed in liver /gb=AK233507 /gi=115554497 /ug=Ssc.53859 /len=2236"	GO:0005856//cytoskeleton;GO:0044444//cytoplasmic part;GO:0044421//extracellular region part;GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding	-	gi|115497814|ref|NP_001068667.1|/0/nucleobindin-1 precursor [Bos taurus]
gnl|UG|Ssc#S35170208	0	0	0	0	5	1.5	"Sus scrofa mRNA, clone:TES010021B08, expressed in testis /gb=AK238439 /gi=115549631 /ug=Ssc.26425 /len=1619"	GO:0005813//centrosome	-	-	gi|84370141|ref|NP_001033649.1|/0/POC1 centriolar protein homolog A [Bos taurus]
gnl|UG|Ssc#S35167542	7	2.02	5	1.43	13	3.91	"Sus scrofa mRNA, clone:AMP010004B01, expressed in alveolar macrophage /gb=AK230506 /gi=115552197 /ug=Ssc.5368 /len=1643"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|149724144|ref|XP_001504313.1|/1.39986e-162/PREDICTED: similar to My027 protein [Equus caballus]
gnl|UG|Ssc#S58302469	14	4.03	0	0	7	2.1	"PREDICTED: Sus scrofa NAD(P) transhydrogenase, mitochondrial-like (LOC100526144), mRNA /cds=p(1,2328) /gb=XM_003133930 /gi=311273661 /ug=Ssc.19341 /len=3257"	GO:0031224//intrinsic to membrane;GO:0005743//mitochondrial inner membrane	GO:0000166//nucleotide binding;GO:0008746//NAD(P)+ transhydrogenase activity	GO:0006818//hydrogen transport;GO:0009060//aerobic respiration	"gi|311273662|ref|XP_003133978.1|/0/PREDICTED: NAD(P) transhydrogenase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58309300	8	2.3	0	0	0	0	"PREDICTED: Sus scrofa zinc finger protein 91-like (LOC100513541), mRNA /cds=p(1,2976) /gb=XM_003127101 /gi=311257488 /ug=Ssc.94017 /len=2976"	-	-	-	gi|311257489|ref|XP_003127149.1|/0/PREDICTED: zinc finger protein 91-like [Sus scrofa]
gnl|UG|Ssc#S55322174	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:DCI010115E07, expressed in dendritic cells (immature) /gb=AK344709 /gi=288782698 /ug=Ssc.93814 /len=1439"	-	GO:0003676//nucleic acid binding;GO:0016741	-	gi|194221106|ref|XP_001915683.1|/0/PREDICTED: similar to THUMP domain containing 3 [Equus caballus]
gnl|UG|Ssc#S19548665	0	0	6	1.72	0	0	"995133 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN164761 /gi=46179191 /ug=Ssc.26977 /len=869"	-	-	-	-
gnl|UG|Ssc#S35168542	2	0.58	3	0.86	2	0.6	"Sus scrofa mRNA, clone:LVR010088F03, expressed in liver /gb=AK232581 /gi=115551148 /ug=Ssc.21275 /len=1759"	GO:0005815//microtubule organizing center;GO:0005768//endosome;GO:0031410//cytoplasmic vesicle	GO:0008047//enzyme activator activity;GO:0042802//identical protein binding;GO:0005102//receptor binding	GO:0016192//vesicle-mediated transport;GO:0012501//programmed cell death;GO:0043087//regulation of GTPase activity;GO:0016044//cellular membrane organization	gi|300798383|ref|NP_001180090.1|/4.45136e-146/rab GTPase-binding effector protein 1 [Bos taurus]
gnl|UG|Ssc#S46878719	116	33.4	39	11.15	161	48.38	"PREDICTED: Sus scrofa signal recognition particle 54kDa, transcript variant 1 (SRP54), mRNA /cds=p(572,2092) /gb=XM_001927799 /gi=311260884 /ug=Ssc.3078 /len=2799"	-	-	-	-
gnl|UG|Ssc#S55323763	21	6.05	10	2.86	9	2.7	"Sus scrofa mRNA, clone:SPL010020F11, expressed in spleen /gb=AK350248 /gi=288781109 /ug=Ssc.75868 /len=1417"	-	-	-	-
gnl|UG|Ssc#S46876637	364	104.8	509	145.5	356	106.99	"PREDICTED: Sus scrofa G protein-coupled receptor kinase interacting ArfGAP 2, transcript variant 1 (GIT2), mRNA /cds=p(160,2439) /gb=XM_001926081 /gi=311270768 /ug=Ssc.6072 /len=3040"	GO:0031981//nuclear lumen	GO:0005083//small GTPase regulator activity;GO:0046914//transition metal ion binding	GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0032012//regulation of ARF protein signal transduction	gi|311270769|ref|XP_001926116.2|/0/PREDICTED: ARF GTPase-activating protein GIT2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58313883	322	92.71	199	56.88	277	83.25	"PREDICTED: Sus scrofa hypothetical protein LOC100525028 (LOC100525028), mRNA /cds=p(240,857) /gb=XM_003122518 /gi=311247263 /ug=Ssc.19168 /len=962"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|311247264|ref|XP_003122566.1|/3.38227e-50/PREDICTED: hypothetical protein LOC100525028 [Sus scrofa]
gnl|UG|Ssc#S23213001	33	9.5	39	11.15	59	17.73	"Sus scrofa clone Clu_55337.scr.msk.p1.Contig1, mRNA sequence /gb=AY610007 /gi=52351577 /ug=Ssc.2776 /len=1305"	GO:0005875//microtubule associated complex	GO:0003824//catalytic activity	-	gi|164420721|ref|NP_001019655.2|/1.68144e-88/dynactin 5 [Bos taurus]
gnl|UG|Ssc#S55323744	7	2.02	6	1.72	23	6.91	"Sus scrofa mRNA, clone:SPL010024A07, expressed in spleen /gb=AK350267 /gi=288781128 /ug=Ssc.6353 /len=1722"	GO:0000502//proteasome complex	GO:0061135;GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0010466//negative regulation of peptidase activity"	gi|311274616|ref|XP_003134397.1|/1.20985e-164/PREDICTED: proteasome inhibitor PI31 subunit-like [Sus scrofa]
gnl|UG|Ssc#S35169239	10	2.88	28	8	15	4.51	"Sus scrofa mRNA, clone:LVR010045E01, expressed in liver /gb=AK232430 /gi=115550600 /ug=Ssc.997 /len=1034"	GO:0044431//Golgi apparatus part;GO:0031090//organelle membrane;GO:0031224//intrinsic to membrane	GO:0046923//ER retention sequence binding;GO:0004871//signal transducer activity	GO:0035437//maintenance of protein localization in endoplasmic reticulum;GO:0023052//signaling;GO:0015031//protein transport	gi|13385318|ref|NP_080117.1|/5.52503e-118/ER lumen protein retaining receptor 2 [Mus musculus]
gnl|UG|Ssc#S40405412	0	0	0	0	0	0	"rpgl22_e17.y1 pgl Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW500019 /gi=182814255 /ug=Ssc.61355 /len=523"	GO:0005813//centrosome;GO:0005882//intermediate filament	GO:0005488//binding	GO:0006915//apoptosis;GO:0051704;GO:0043001//Golgi to plasma membrane protein transport;GO:0019221//cytokine-mediated signaling pathway;GO:0032502//developmental process	gi|148878161|gb|AAI46204.1|/3.32114e-14/KRT18 protein [Bos taurus]
gnl|UG|Ssc#S58302502	11	3.17	7	2	5	1.5	"PREDICTED: Sus scrofa nucleoporin 155kDa (NUP155), mRNA /cds=p(237,4589) /gb=XM_003133893 /gi=311273593 /ug=Ssc.7846 /len=4655"	GO:0005635//nuclear envelope	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0050658//RNA transport;GO:0051169//nuclear transport;GO:0015758//glucose transport;GO:0044238//primary metabolic process	gi|311273594|ref|XP_003133941.1|/0/PREDICTED: nuclear pore complex protein Nup155-like [Sus scrofa]
gnl|UG|Ssc#S55323959	20	5.76	73	20.87	23	6.91	"Sus scrofa mRNA, clone:AMP010021G01, expressed in alveolar macrophages /gb=AK343702 /gi=288780913 /ug=Ssc.84159 /len=2601"	GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0019217//regulation of fatty acid metabolic process;GO:0022402//cell cycle process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|118766335|ref|NP_001073138.1|/0/calcium-binding protein 39-like [Homo sapiens]
gnl|UG|Ssc#S58304264	7	2.02	25	7.15	19	5.71	"PREDICTED: Sus scrofa natural killer-tumor recognition sequence (NKTR), mRNA /cds=p(1,4395) /gb=XM_003132134 /gi=311268724 /ug=Ssc.10701 /len=5566"	-	GO:0008144//drug binding;GO:0016853//isomerase activity	-	gi|311268725|ref|XP_003132182.1|/0/PREDICTED: NK-tumor recognition protein-like [Sus scrofa]
gnl|UG|Ssc#S58309592	0	0	0	0	0	0	"PREDICTED: Sus scrofa DNA replication factor Cdt1-like (LOC100525749), mRNA /cds=p(1,1773) /gb=XM_003126807 /gi=311256891 /ug=Ssc.3587 /len=1773"	GO:0031981//nuclear lumen	GO:0005488//binding	GO:0051320;GO:0006270//DNA-dependent DNA replication initiation;GO:0007165//signal transduction;GO:0000082//G1/S transition of mitotic cell cycle	gi|311256892|ref|XP_003126855.1|/0/PREDICTED: DNA replication factor Cdt1-like [Sus scrofa]
gnl|UG|Ssc#S58311016	7	2.02	10	2.86	12	3.61	"PREDICTED: Sus scrofa Rho-associated, coiled-coil containing protein kinase 2 (ROCK2), mRNA /cds=p(1,4224) /gb=XM_003125386 /gi=311253122 /ug=Ssc.16165 /len=4718"	-	-	-	-
gnl|UG|Ssc#S19520269	8	2.3	0	0	9	2.7	"Sus scrofa myotubularin related protein 3 (MTMR3) mRNA, 3' UTR /gb=AY553930 /gi=45758489 /ug=Ssc.50315 /len=883"	-	-	-	-
gnl|UG|Ssc#S46879737	15	4.32	7	2	12	3.61	"PREDICTED: Sus scrofa guanine nucleotide-exchange protein (LOC100156861), mRNA /cds=p(1,5550) /gb=XM_001928010 /gi=311253753 /ug=Ssc.14317 /len=6855"	GO:0044424//intracellular part	GO:0005083//small GTPase regulator activity;GO:0008092//cytoskeletal protein binding	GO:0019222//regulation of metabolic process;GO:0016192//vesicle-mediated transport;GO:0032011//ARF protein signal transduction	gi|194036657|ref|XP_001928045.1|/0/PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Sus scrofa]
gnl|UG|Ssc#S38675441	0	0	0	0	0	0	"Sus scrofa AP3D1 mRNA for adaptor-related protein complex 3, delta-1 subunit, partial cds /cds=p(1,3606) /gb=AB271938 /gi=146741315 /ug=Ssc.3398 /len=4546"	-	-	-	"gi|146741316|dbj|BAF62313.1|/0/adaptor-related protein complex 3, delta-1 subunit [Sus scrofa]"
gnl|UG|Ssc#S46876402	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa unc-51-like kinase 1 (C. elegans) (ULK1), mRNA /cds=p(3,3173) /gb=XM_001928551 /gi=311270527 /ug=Ssc.35010 /len=4785"	GO:0012506//vesicle membrane;GO:0005773//vacuole;GO:0005626//insoluble fraction;GO:0044297//cell body;GO:0043234//protein complex;GO:0042995//cell projection	GO:0005515//protein binding;GO:0004672//protein kinase activity;GO:0032559	GO:0033036;GO:0021932;GO:0006898//receptor-mediated endocytosis;GO:0021533//cell differentiation in hindbrain;GO:0007033//vacuole organization;GO:0031099;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0007264//small GTPase mediated signal transduction;GO:0030030//cell projection organization;GO:0006468//protein phosphorylation;GO:0030308//negative regulation of cell growth;GO:0009966//regulation of signal transduction;GO:0006914//autophagy;GO:0048588//developmental cell growth	gi|194043576|ref|XP_001928586.1|/0/PREDICTED: serine/threonine-protein kinase ULK1 [Sus scrofa]
gnl|UG|Ssc#S58310266	7	2.02	5	1.43	3	0.9	"PREDICTED: Sus scrofa la-related protein 4-like (LOC100518731), mRNA /cds=p(1,3264) /gb=XM_003126134 /gi=311255323 /ug=Ssc.24420 /len=3264"	-	GO:0003676//nucleic acid binding	-	gi|311255324|ref|XP_003126182.1|/0/PREDICTED: la-related protein 4-like [Sus scrofa]
gnl|UG|Ssc#S16770892	21	6.05	31	8.86	7	2.1	"853173 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF368518 /gi=34174113 /ug=Ssc.83327 /len=659"	-	-	-	-
gnl|UG|Ssc#S58312388	2	0.58	3	0.86	0	0	"PREDICTED: Sus scrofa probable histidyl-tRNA synthetase, mitochondrial-like (LOC100521256), mRNA /cds=p(183,1703) /gb=XM_003124048 /gi=311250314 /ug=Ssc.12954 /len=2464"	GO:0044429//mitochondrial part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|311250315|ref|XP_003124096.1|/0/PREDICTED: probable histidyl-tRNA synthetase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S6015201	0	0	0	0	7	2.1	"362498 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BI338650 /gi=15031933 /ti=448061264 /ug=Ssc.48948 /len=567"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|301772962|ref|XP_002921920.1|/2.10237e-71/PREDICTED: zinc finger protein 362-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S6056249	50	14.4	45	12.86	68	20.44	"MI-P-E6-ahk-d-06-1-UM.s1 MI-P-E6 Sus scrofa cDNA clone MI-P-E6-ahk-d-06-1-UM 3', mRNA sequence /clone=MI-P-E6-ahk-d-06-1-UM /clone_end=3' /gb=BQ599534 /gi=21546260 /ug=Ssc.7824 /len=575"	-	-	-	-
gnl|UG|Ssc#S35167816	106	30.52	52	14.86	75	22.54	"Sus scrofa mRNA, clone:OVRM10182E03, expressed in ovary /gb=AK236330 /gi=115551923 /ug=Ssc.1143 /len=2122"	GO:0044424//intracellular part	GO:0046872//metal ion binding;GO:0005543//phospholipid binding;GO:0055102//lipase inhibitor activity	GO:0016192//vesicle-mediated transport;GO:0043066//negative regulation of apoptosis;GO:0023052//signaling	gi|264681432|ref|NP_001161111.1|/2.56938e-175/annexin A4 [Sus scrofa]
gnl|UG|Ssc#S32771885	0	0	0	0	3	0.9	"BP997832 full-length enriched pig cDNA library, basal ganglia Sus scrofa cDNA clone HY_Scereb_7.1_H02_f 5', mRNA sequence /clone=HY_Scereb_7.1_H02_f /clone_end=5' /gb=BP997832 /gi=94331692 /ug=Ssc.83821 /len=853"	-	-	-	-
gnl|UG|Ssc#S35334147	116	33.4	42	12.01	129	38.77	"SusFleck_BF_0085_0088_5_pCNS_J05 SusFleck Backfat Sus scrofa cDNA clone 0085_0088_J05 5', mRNA sequence /clone=0085_0088_J05 /clone_end=5' /gb=DT332544 /gi=116349849 /ug=Ssc.90033 /len=794"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0003712//transcription cofactor activity	GO:0050896//response to stimulus;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0003012//muscle system process	gi|148233298|ref|NP_001090954.1|/4.18852e-34/heat shock factor-binding protein 1 [Sus scrofa]
gnl|UG|Ssc#S58306142	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa ataxin-7-like protein 1-like (LOC100517110), mRNA /cds=p(1,2889) /gb=XM_003130253 /gi=311264721 /ug=Ssc.31979 /len=3106"	-	-	-	gi|311264722|ref|XP_003130301.1|/0/PREDICTED: ataxin-7-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S6072399	7	2.02	0	0	3	0.9	"UNL-P-FN-av-b-06-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-av-b-06-0-UNL 3', mRNA sequence /clone=UNL-P-FN-av-b-06-0-UNL /clone_end=3' /gb=BI181648 /gi=14656057 /ug=Ssc.49661 /len=839"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0034062//RNA polymerase activity;GO:0019899//enzyme binding;GO:0016301//kinase activity	"GO:0006289//nucleotide-excision repair;GO:0000377;GO:0006352//transcription initiation, DNA-dependent;GO:0006397//mRNA processing;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|194389262|dbj|BAG65619.1|/2.02404e-138/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S5989474	2	0.58	4	1.14	5	1.5	"48036 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=AW482851 /gi=7052957 /ti=447565884 /ug=Ssc.29616 /len=261"	-	-	-	-
gnl|UG|Ssc#S35173703	5	1.44	2	0.57	0	0	"Sus scrofa mRNA, clone:UTR010060B11, expressed in uterus /gb=AK240370 /gi=115546132 /ug=Ssc.43769 /len=2113"	-	-	-	gi|258676922|gb|ACV87314.1|/7.06163e-08/IL-23 [Sus scrofa]
gnl|UG|Ssc#S14892739	5	1.44	3	0.86	10	3.01	"sn74_C04.f sn Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CB473683 /gi=29280069 /ug=Ssc.30249 /len=608"	-	GO:0005488//binding	GO:0051234//establishment of localization;GO:0010876	gi|291389612|ref|XP_002711308.1|/3.95681e-109/PREDICTED: oxysterol-binding protein-like protein 8 [Oryctolagus cuniculus]
gnl|UG|Ssc#S43509681	0	0	3	0.86	0	0	"Sus scrofa RAB22A, member RAS oncogene family (RAB22A), mRNA /cds=p(246,830) /gb=NM_001123174 /gi=178056609 /ug=Ssc.10486 /len=8075"	GO:0005768//endosome;GO:0031090//organelle membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0016192//vesicle-mediated transport;GO:0035556//intracellular signal transduction;GO:0006996//organelle organization;GO:0009207	gi|178056610|ref|NP_001116646.1|/5.96944e-104/ras-related protein Rab-22A [Sus scrofa]
gnl|UG|Ssc#S46878500	23	6.62	18	5.15	33	9.92	"PREDICTED: Sus scrofa uncharacterized protein C6orf130 homolog, transcript variant 1 (LOC100157694), mRNA /cds=p(170,628) /gb=XM_001928876 /gi=311260373 /ug=Ssc.4941 /len=2311"	-	-	-	gi|194039225|ref|XP_001928911.1|/2.83512e-82/PREDICTED: uncharacterized protein C6orf130 homolog isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35168525	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:LVR010095E09, expressed in liver /gb=AK232598 /gi=115551165 /ug=Ssc.9754 /len=2204"	GO:0044424//intracellular part	-	GO:0007165//signal transduction	gi|153791859|ref|NP_001093407.1|/0/ankyrin repeat and SOCS box protein 6 [Sus scrofa]
gnl|UG|Ssc#S58303751	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa Golgin subfamily B member 1-like (LOC100521641), mRNA /cds=p(93,9872) /gb=XM_003132646 /gi=311269930 /ug=Ssc.1190 /len=11132"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	-	-	gi|311269931|ref|XP_003132694.1|/0/PREDICTED: LOW QUALITY PROTEIN: Golgin subfamily B member 1-like [Sus scrofa]
gnl|UG|Ssc#S58304051	0	0	0	0	0	0	"PREDICTED: Sus scrofa THUMP domain-containing protein 3-like (LOC100520640), mRNA /cds=p(89,379) /gb=XM_003132353 /gi=311269216 /ug=Ssc.5760 /len=1092"	-	GO:0003676//nucleic acid binding;GO:0016741	-	gi|194221106|ref|XP_001915683.1|/8.80819e-69/PREDICTED: similar to THUMP domain containing 3 [Equus caballus]
gnl|UG|Ssc#S6056893	2	0.58	2	0.57	0	0	"MI-P-H1-abm-e-04-1-UM.s1 MI-P-H1 Sus scrofa cDNA clone MI-P-H1-abm-e-04-1-UM 3', mRNA sequence /clone=MI-P-H1-abm-e-04-1-UM /clone_end=3' /gb=BF703526 /gi=11988940 /ug=Ssc.81457 /len=684"	-	-	-	-
gnl|UG|Ssc#S16767076	19	5.47	19	5.43	19	5.71	"834665 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF364671 /gi=34166504 /ug=Ssc.70562 /len=730"	-	-	-	-
gnl|UG|Ssc#S58315124	2	0.58	3	0.86	0	0	"PREDICTED: Sus scrofa zinc finger protein 292 (ZNF292), mRNA /cds=p(1,8169) /gb=XM_003121280 /gi=311244140 /ug=Ssc.19121 /len=8984"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|311244141|ref|XP_003121328.1|/0/PREDICTED: zinc finger protein 292-like [Sus scrofa]
gnl|UG|Ssc#S23695644	3	0.86	3	0.86	0	0	"1104146 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN106747 /gi=59782010 /ug=Ssc.4843 /len=880"	GO:0005929//cilium;GO:0005815//microtubule organizing center;GO:0031253//cell projection membrane;GO:0043234//protein complex	GO:0005488//binding	GO:0034613//cellular protein localization;GO:0032401//establishment of melanosome localization;GO:0003006//developmental process involved in reproduction;GO:0007610//behavior;GO:0021543//pallium development;GO:0042384//cilium assembly;GO:0009887//organ morphogenesis;GO:0030154//cell differentiation;GO:0060295;GO:0043954//cellular component maintenance;GO:0035264//multicellular organism growth;GO:0021544//subpallium development	gi|21313344|ref|NP_080392.1|/2.37702e-84/Bardet-Biedl syndrome 2 protein homolog [Mus musculus]
gnl|UG|Ssc#S46879061	18	5.18	0	0	4	1.2	"PREDICTED: Sus scrofa DEK oncogene, transcript variant 1 (DEK), mRNA /cds=p(164,1291) /gb=XM_001927909 /gi=311259783 /ug=Ssc.27200 /len=2841"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0005515//protein binding;GO:0003702//RNA polymerase II transcription factor activity	"GO:0006355//regulation of transcription, DNA-dependent;GO:0023052//signaling;GO:0019058//viral infectious cycle;GO:0006325//chromatin organization;GO:0010033//response to organic substance"	gi|194038067|ref|XP_001927944.1|/3.46582e-85/PREDICTED: protein DEK isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58304197	4	1.15	2	0.57	6	1.8	"PREDICTED: Sus scrofa NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like (LOC100156018), mRNA /cds=p(30,587) /gb=XM_003132200 /gi=311268884 /ug=Ssc.21844 /len=1190"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0010257	gi|311268885|ref|XP_003132248.1|/1.52906e-93/PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like [Sus scrofa]
gnl|UG|Ssc#S46876599	4	1.15	0	0	3	0.9	"PREDICTED: Sus scrofa kringle containing transmembrane protein 1 (KREMEN1), mRNA /cds=p(1,1350) /gb=XM_001928474 /gi=311270849 /ug=Ssc.47676 /len=1962"	GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0005488//binding	GO:0048513//organ development;GO:0030111//regulation of Wnt receptor signaling pathway	gi|311270850|ref|XP_001928509.2|/0/PREDICTED: kremen protein 1 [Sus scrofa]
gnl|UG|Ssc#S46877340	87	25.05	98	28.01	72	21.64	"PREDICTED: Sus scrofa ribeye (LOC100154421), mRNA /cds=p(1,2949) /gb=XM_001929068 /gi=194041638 /ug=Ssc.20400 /len=4157"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044459//plasma membrane part	"GO:0030528//transcription regulator activity;GO:0016614//oxidoreductase activity, acting on CH-OH group of donors;GO:0000166//nucleotide binding"	"GO:0001654//eye development;GO:0006355//regulation of transcription, DNA-dependent;GO:0007399//nervous system development;GO:0019058//viral infectious cycle;GO:0008283//cell proliferation;GO:0045444//fat cell differentiation"	gi|194041639|ref|XP_001929103.1|/0/PREDICTED: hypothetical protein LOC100154421 [Sus scrofa]
gnl|UG|Ssc#S35168037	29	8.35	38	10.86	21	6.31	"Sus scrofa mRNA, clone:THY010064E07, expressed in thymus /gb=AK239117 /gi=115551653 /ug=Ssc.89703 /len=1998"	-	-	-	gi|149727391|ref|XP_001495933.1|/2.66509e-150/PREDICTED: pleckstrin and Sec7 domain containing 4 [Equus caballus]
gnl|UG|Ssc#S19549616	5	1.44	6	1.72	3	0.9	"996162 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN165724 /gi=46180154 /ug=Ssc.55619 /len=891"	-	-	-	-
gnl|UG|Ssc#S35167480	9	2.59	0	0	12	3.61	"Sus scrofa mRNA, clone:AMP010010H05, expressed in alveolar macrophage /gb=AK230568 /gi=115552259 /ug=Ssc.51897 /len=3039"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	"GO:0016709//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;GO:0005506//iron ion binding"	GO:0006690//icosanoid metabolic process	gi|311249179|ref|XP_003123482.1|/0/PREDICTED: leukotriene-B(4) omega-hydroxylase 2 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55322505	53	15.26	28	8	16	4.81	"Sus scrofa mRNA, clone:TCH010040C11, expressed in trachea /gb=AK350839 /gi=288782367 /ug=Ssc.11607 /len=1730"	GO:0044421//extracellular region part;GO:0016020//membrane	GO:0008289//lipid binding;GO:0004518//nuclease activity;GO:0008565//protein transporter activity	GO:0035264//multicellular organism growth;GO:0006629//lipid metabolic process;GO:0008283//cell proliferation;GO:0002376//immune system process;GO:0009987//cellular process	gi|311250971|ref|XP_003124355.1|/3.002e-46/PREDICTED: zinc-alpha-2-glycoprotein-like [Sus scrofa]
gnl|UG|Ssc#S58306790	23	6.62	71	20.3	27	8.11	"PREDICTED: Sus scrofa leucine-rich repeat-containing protein 51-like, transcript variant 2 (LOC100520208), mRNA /cds=p(260,823) /gb=XM_003129590 /gi=311263400 /ug=Ssc.799 /len=900"	GO:0031224//intrinsic to membrane;GO:0044424//intracellular part	GO:0008171//O-methyltransferase activity	GO:0050954//sensory perception of mechanical stimulus;GO:0042133//neurotransmitter metabolic process;GO:0006730//one-carbon metabolic process;GO:0060119//inner ear receptor cell development;GO:0006584//catecholamine metabolic process	gi|311263399|ref|XP_003129637.1|/2.79901e-104/PREDICTED: leucine-rich repeat-containing protein 51-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46876671	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa two pore segment channel 1 (TPCN1), mRNA /cds=p(1,2175) /gb=XM_001924226 /gi=311270713 /ug=Ssc.28730 /len=2243"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005216//ion channel activity	GO:0006810//transport	gi|311270714|ref|XP_001924261.2|/0/PREDICTED: two pore calcium channel protein 1 [Sus scrofa]
gnl|UG|Ssc#S23761836	4	1.15	3	0.86	6	1.8	"1119372 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN119455 /gi=59813715 /ug=Ssc.4212 /len=758"	GO:0031981//nuclear lumen	GO:0003712//transcription cofactor activity;GO:0043565//sequence-specific DNA binding	"GO:0050896//response to stimulus;GO:0023052//signaling;GO:0006351//transcription, DNA-dependent"	gi|149742926|ref|XP_001494886.1|/3.03534e-63/PREDICTED: similar to ETS domain-containing protein Elk-3 (ETS-related protein NET) (ETS-related protein ERP) (SRF accessory protein 2) (SAP-2) [Equus caballus]
gnl|UG|Ssc#S58309772	28	8.06	17	4.86	33	9.92	"PREDICTED: Sus scrofa sodium-coupled neutral amino acid transporter 1-like (LOC100525464), mRNA /cds=p(1,1461) /gb=XM_003126625 /gi=311256486 /ug=Ssc.21644 /len=3563"	GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane;GO:0043005//neuron projection	GO:0015175//neutral amino acid transmembrane transporter activity;GO:0005343//organic acid:sodium symporter activity	GO:0015804//neutral amino acid transport;GO:0001505//regulation of neurotransmitter levels;GO:0006807//nitrogen compound metabolic process;GO:0030001//metal ion transport	gi|311256487|ref|XP_003126673.1|/0/PREDICTED: sodium-coupled neutral amino acid transporter 1-like [Sus scrofa]
gnl|UG|Ssc#S6089006	12	3.45	20	5.72	12	3.61	"MI-P-HO-afz-c-05-1-UM.s1 MI-P-HO Sus scrofa cDNA clone MI-P-HO-afz-c-05-1-UM 3', mRNA sequence /clone=MI-P-HO-afz-c-05-1-UM /clone_end=3' /gb=BQ601865 /gi=21548591 /ug=Ssc.82417 /len=494"	-	-	-	-
gnl|UG|Ssc#S46880179	6	1.73	0	0	2	0.6	"PREDICTED: Sus scrofa transmembrane emp24 domain-containing protein 5-like (LOC100157999), mRNA /cds=p(260,940) /gb=XM_001928295 /gi=311254776 /ug=Ssc.7421 /len=4343"	GO:0044444//cytoplasmic part;GO:0031224//intrinsic to membrane;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0051234//establishment of localization	gi|73960038|ref|XP_537072.2|/8.97425e-118/PREDICTED: similar to Transmembrane emp24 domain containing protein 5 precursor [Canis familiaris]
gnl|UG|Ssc#S58308746	0	0	0	0	0	0	"PREDICTED: Sus scrofa rho guanine nucleotide exchange factor 10-like protein-like (LOC100525645), mRNA /cds=p(7,744) /gb=XM_003127652 /gi=311258614 /ug=Ssc.85309 /len=1143"	GO:0005856//cytoskeleton;GO:0016585//chromatin remodeling complex	"GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0016811//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;GO:0005515//protein binding"	GO:0019222//regulation of metabolic process;GO:0007266//Rho protein signal transduction	gi|311258615|ref|XP_003127700.1|/8.97266e-120/PREDICTED: rho guanine nucleotide exchange factor 10-like protein-like [Sus scrofa]
gnl|UG|Ssc#S19546247	2	0.58	3	0.86	7	2.1	"951721 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN162343 /gi=46176773 /ug=Ssc.54394 /len=713"	-	-	-	gi|157819403|ref|NP_001102043.1|/4.78259e-47/hypothetical protein LOC362084 [Rattus norvegicus]
gnl|UG|Ssc#S46876515	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa calcineurin binding protein 1 (CABIN1), mRNA /cds=p(1,5067) /gb=XM_001926724 /gi=194043341 /ug=Ssc.79733 /len=5067"	-	-	-	-
gnl|UG|Ssc#S46877955	6	1.73	4	1.14	0	0	"PREDICTED: Sus scrofa ankyrin repeat and SAM domain-containing protein 1A-like (LOC100156655), mRNA /cds=p(103,3501) /gb=XM_001926544 /gi=311260274 /ug=Ssc.38727 /len=3551"	GO:0044424//intracellular part	GO:0005488//binding	-	gi|311260275|ref|XP_001926579.2|/0/PREDICTED: ankyrin repeat and SAM domain-containing protein 1A-like [Sus scrofa]
gnl|UG|Ssc#S58301963	14	4.03	3	0.86	5	1.5	"PREDICTED: Sus scrofa bladder cancer-associated protein-like, transcript variant 2 (LOC100155728), mRNA /cds=p(235,498) /gb=XM_003134433 /gi=311274838 /ug=Ssc.17270 /len=2013"	-	-	-	-
gnl|UG|Ssc#S58306205	89	25.62	108	30.87	140	42.07	"PREDICTED: Sus scrofa twist-related protein 1-like (LOC100516456), mRNA /cds=p(1,609) /gb=XM_003130192 /gi=311264591 /ug=Ssc.17121 /len=1591"	-	-	-	-
gnl|UG|Ssc#S58312610	11	3.17	0	0	14	4.21	"PREDICTED: Sus scrofa ankyrin repeat domain 32 (ANKRD32), mRNA /cds=p(1,1266) /gb=XM_003123791 /gi=311249856 /ug=Ssc.17843 /len=1755"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311249857|ref|XP_003123839.1|/0/PREDICTED: ankyrin repeat domain-containing protein 32-like [Sus scrofa]
gnl|UG|Ssc#S58303837	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa YEATS domain containing 2 (YEATS2), mRNA /cds=p(188,4471) /gb=XM_003132559 /gi=311269707 /ug=Ssc.28049 /len=4596"	GO:0000123//histone acetyltransferase complex	GO:0016564//transcription repressor activity;GO:0008134//transcription factor binding	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0016573//histone acetylation	gi|311269708|ref|XP_003132607.1|/0/PREDICTED: YEATS domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35172191	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:ITT010033G01, expressed in intestine /gb=AK231302 /gi=115547644 /ug=Ssc.54222 /len=1369"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0006396//RNA processing	"gi|119618787|gb|EAW98381.1|/3.50863e-63/ADP-ribosylation-like factor 6 interacting protein 4, isoform CRA_i [Homo sapiens]"
gnl|UG|Ssc#S55320549	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:LNG010097D05, expressed in lung /gb=AK345739 /gi=288784323 /ug=Ssc.30726 /len=2612"	GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0044297//cell body;GO:0008021//synaptic vesicle;GO:0044459//plasma membrane part	GO:0022892;GO:0005515//protein binding	GO:0006906//vesicle fusion;GO:0048193//Golgi vesicle transport;GO:0016197//endosome transport;GO:0015031//protein transport	gi|291404824|ref|XP_002718757.1|/7.27563e-82/PREDICTED: vesicle transport through interaction with t-SNAREs homolog 1A-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S40299143	4	1.15	0	0	4	1.2	"rmga07_p21.y1 mga Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW393750 /gi=182851894 /ug=Ssc.68842 /len=550"	-	-	-	-
gnl|UG|Ssc#S46878299	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa polymerase (DNA directed), gamma (POLG), mRNA /cds=p(302,3976) /gb=XM_001927064 /gi=311260710 /ug=Ssc.41320 /len=4420"	GO:0019866//organelle inner membrane;GO:0005759//mitochondrial matrix	GO:0003676//nucleic acid binding;GO:0019899//enzyme binding;GO:0034061;GO:0004518//nuclease activity	GO:0006261//DNA-dependent DNA replication;GO:0032502//developmental process	gi|194039637|ref|XP_001927099.1|/0/PREDICTED: DNA polymerase subunit gamma-1 [Sus scrofa]
gnl|UG|Ssc#S58310793	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa hydroxyacid-oxoacid transhydrogenase, mitochondrial-like (LOC100521620), mRNA /cds=p(8,1411) /gb=XM_003125603 /gi=311253768 /ug=Ssc.48093 /len=2052"	GO:0044429//mitochondrial part	"GO:0043169//cation binding;GO:0016614//oxidoreductase activity, acting on CH-OH group of donors"	GO:0006818//hydrogen transport;GO:0043648//dicarboxylic acid metabolic process	"gi|311253769|ref|XP_003125651.1|/0/PREDICTED: hydroxyacid-oxoacid transhydrogenase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35165313	89	25.62	233	66.6	115	34.56	"Sus scrofa mRNA, clone:LVRM10145A11, expressed in liver /gb=AK233423 /gi=115554413 /ug=Ssc.2080 /len=1902"	GO:0030135//coated vesicle;GO:0043234//protein complex;GO:0000407//pre-autophagosomal structure;GO:0005774//vacuolar membrane;GO:0044431//Golgi apparatus part	GO:0035091//phosphatidylinositol binding;GO:0035258//steroid hormone receptor binding	"GO:0048199//vesicle targeting, to, from or within Golgi;GO:0006914//autophagy"	gi|298231145|ref|NP_001177223.1|/0/WD repeat domain phosphoinositide-interacting protein 1 [Sus scrofa]
gnl|UG|Ssc#S55319899	11	3.17	0	0	4	1.2	"Sus scrofa mRNA, clone:THY010101H07, expressed in thymus /gb=AK351866 /gi=288784985 /ug=Ssc.71752 /len=1272"	GO:0044429//mitochondrial part	GO:0030580//quinone cofactor methyltransferase activity;GO:0010420//polyprenyldihydroxybenzoate methyltransferase activity	GO:0019400;GO:0006743//ubiquinone metabolic process;GO:0006730//one-carbon metabolic process	"gi|296484101|gb|DAA26216.1|/5.44691e-177/hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Bos taurus]"
gnl|UG|Ssc#S17510386	5	1.44	0	0	0	0	"BX665412 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0006.f.03 5prim, mRNA sequence /clone=scag0006.f.03 /clone_end=5' /gb=BX665412 /gi=90233967 /ug=Ssc.10888 /len=905"	GO:0044444//cytoplasmic part;GO:0005635//nuclear envelope	GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0044238//primary metabolic process;GO:0050658//RNA transport;GO:0015758//glucose transport;GO:0006605//protein targeting	gi|73976492|ref|XP_853844.1|/2.42563e-108/PREDICTED: similar to nucleoporin like 2 [Canis familiaris]
gnl|UG|Ssc#S35173381	102	29.37	34	9.72	99	29.75	"Sus scrofa mRNA, clone:AMP010070G07, expressed in alveolar macrophage /gb=AK230973 /gi=115546454 /ug=Ssc.8077 /len=2475"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0030529//ribonucleoprotein complex	"GO:0000989//transcription factor binding transcription factor activity;GO:0004386//helicase activity;GO:0032559;GO:0004518//nuclease activity;GO:0042623//ATPase activity, coupled;GO:0003729//mRNA binding"	"GO:0006351//transcription, DNA-dependent;GO:0006413//translational initiation;GO:0009207;GO:0000398//nuclear mRNA splicing, via spliceosome;GO:0032501//multicellular organismal process;GO:0032392//DNA geometric change;GO:0006281//DNA repair"	gi|301775390|ref|XP_002923115.1|/0/PREDICTED: ATP-dependent RNA helicase DDX1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35133935	0	0	2	0.57	0	0	"Sus scrofa septin and tuftelin-interacting protein mRNA, complete cds /cds=p(50,2560) /gb=DQ923315 /gi=115344324 /ug=Ssc.23477 /len=2632"	GO:0005681//spliceosomal complex;GO:0016604//nuclear body;GO:0031012//extracellular matrix	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0043062//extracellular structure organization;GO:0048869;GO:0009888//tissue development;GO:0000377;GO:0006351//transcription, DNA-dependent"	gi|116175249|ref|NP_001070682.1|/0/tuftelin-interacting protein 11 [Sus scrofa]
gnl|UG|Ssc#S22341988	6	1.73	10	2.86	6	1.8	"Sus scrofa PqkI mRNA for quaking protein, complete cds /cds=p(1,1026) /gb=AB177988 /gi=55166830 /ug=Ssc.7659 /len=1026"	GO:0031981//nuclear lumen;GO:0016020//membrane	GO:0003676//nucleic acid binding;GO:0019904//protein domain specific binding	GO:0006412//translation;GO:0008366//axon ensheathment;GO:0006396//RNA processing;GO:0050658//RNA transport;GO:0030154//cell differentiation;GO:0001676//long-chain fatty acid metabolic process	gi|7542351|gb|AAF63414.1|AF142419_1/3.99378e-169/QUAKING isoform 6 [Homo sapiens]
gnl|UG|Ssc#S35172018	1103	317.56	4996	1428.1	723	217.28	"Sus scrofa mRNA, clone:OVRM10016F11, expressed in ovary /gb=AK234793 /gi=115547817 /ug=Ssc.78633 /len=1705"	GO:0015935//small ribosomal subunit	GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|149640181|ref|XP_001506584.1|/3.57814e-68/PREDICTED: similar to 40S ribosomal protein S12 [Ornithorhynchus anatinus]
gnl|UG|Ssc#S55324326	2	0.58	3	0.86	2	0.6	"Sus scrofa mRNA, clone:ADR010085D04, expressed in adrenal gland /gb=AK343532 /gi=288780546 /ug=Ssc.44387 /len=4134"	GO:0043231//intracellular membrane-bounded organelle	GO:0016859//cis-trans isomerase activity;GO:0005527//macrolide binding;GO:0005515//protein binding	GO:0018193//peptidyl-amino acid modification	gi|311260298|ref|XP_001929450.2|/0/PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP5 [Sus scrofa]
gnl|UG|Ssc#S35171573	0	0	0	0	0	0	"Sus scrofa mRNA, clone:ITT010076G06, expressed in intestine /gb=AK231476 /gi=115548262 /ug=Ssc.34761 /len=1550"	-	GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0070646;GO:0019941//modification-dependent protein catabolic process;GO:0048232//male gamete generation;GO:0048869	gi|296473096|gb|DAA15211.1|/1.54016e-139/ubiquitin specific protease 42-like [Bos taurus]
gnl|UG|Ssc#S20939052	13	3.74	38	10.86	28	8.41	"AJ650775 CSEQRAN19 Sus scrofa cDNA clone C0003276_E21, mRNA sequence /clone=C0003276_E21 /gb=AJ650775 /gi=49327620 /ug=Ssc.74120 /len=573"	GO:0043234//protein complex;GO:0044459//plasma membrane part;GO:0044429//mitochondrial part	GO:0016836//hydro-lyase activity	GO:0009060//aerobic respiration;GO:0001894//tissue homeostasis;GO:0043648//dicarboxylic acid metabolic process	"gi|240849257|ref|NP_001155363.1|/1.49658e-80/fumarate hydratase, mitochondrial [Ovis aries]"
gnl|UG|Ssc#S16763543	2	0.58	0	0	2	0.6	"827452 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF361138 /gi=34159528 /ug=Ssc.61832 /len=643"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	GO:0032501//multicellular organismal process	gi|301781204|ref|XP_002926018.1|/2.67682e-82/PREDICTED: PHD finger protein 3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S19550056	0	0	2	0.57	0	0	"997422 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN166168 /gi=46180598 /ug=Ssc.27058 /len=463"	-	-	-	-
gnl|UG|Ssc#S17525203	2	0.58	0	0	0	0	"BX674344 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0042.m.15 5prim, mRNA sequence /clone=scac0042.m.15 /clone_end=5' /gb=BX674344 /gi=90246382 /ug=Ssc.2295 /len=829"	GO:0044424//intracellular part	GO:0017111//nucleoside-triphosphatase activity;GO:0005083//small GTPase regulator activity;GO:0008047//enzyme activator activity;GO:0046914//transition metal ion binding;GO:0032561	GO:0043087//regulation of GTPase activity;GO:0032012//regulation of ARF protein signal transduction	"gi|148671170|gb|EDL03117.1|/1.48171e-109/centaurin, gamma 3, isoform CRA_d [Mus musculus]"
gnl|UG|Ssc#S47005760	62	17.85	46	13.15	27	8.11	"Sus scrofa pre-mRNA processing factor 3-like protein (PRPF3) mRNA, complete cds /cds=p(73,2124) /gb=FJ167679 /gi=205363464 /ug=Ssc.23431 /len=2352"	GO:0016604//nuclear body;GO:0030529//ribonucleoprotein complex	GO:0005488//binding	GO:0000377;GO:0050953//sensory perception of light stimulus	gi|209863047|ref|NP_001129437.1|/0/U4/U6 small nuclear ribonucleoprotein Prp3 [Sus scrofa]
gnl|UG|Ssc#S23764912	2	0.58	2	0.57	18	5.41	"1122756 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN122531 /gi=59816810 /ug=Ssc.79915 /len=801"	-	-	-	gi|296201419|ref|XP_002748032.1|/1.12315e-38/PREDICTED: Y-box-binding protein 2-like [Callithrix jacchus]
gnl|UG|Ssc#S58303406	65	18.71	107	30.59	92	27.65	"PREDICTED: Sus scrofa mitogen-activated protein kinase 1-like (LOC100523571), mRNA /cds=p(111,599) /gb=XM_003132988 /gi=311271028 /ug=Ssc.4068 /len=4122"	GO:0005856//cytoskeleton;GO:0031981//nuclear lumen;GO:0032991//macromolecular complex;GO:0030424//axon;GO:0000267//cell fraction;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0043025//neuronal cell body	GO:0032559;GO:0045309//protein phosphorylated amino acid binding;GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0003676//nucleic acid binding;GO:0019901//protein kinase binding	"GO:0001775//cell activation;GO:0006206//pyrimidine base metabolic process;GO:0050673//epithelial cell proliferation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050851//antigen receptor-mediated signaling pathway;GO:0043331//response to dsRNA;GO:0009653//anatomical structure morphogenesis;GO:0016477//cell migration;GO:0007600//sensory perception;GO:0012502//induction of programmed cell death;GO:0006935//chemotaxis;GO:0007599//hemostasis;GO:0045595//regulation of cell differentiation;GO:0007264//small GTPase mediated signal transduction;GO:0002237//response to molecule of bacterial origin;GO:0048545//response to steroid hormone stimulus;GO:0007267//cell-cell signaling;GO:0033554//cellular response to stress;GO:0002224//toll-like receptor signaling pathway;GO:0006412//translation;GO:0000165//MAPKKK cascade;GO:0006468//protein phosphorylation;GO:0048568//embryonic organ development;GO:0006355//regulation of transcription, DNA-dependent"	gi|301781859|ref|XP_002926345.1|/6.14371e-102/PREDICTED: mitogen-activated protein kinase 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20938133	0	0	0	0	2	0.6	"AJ649856 CSEQRAN19 Sus scrofa cDNA clone C0003273_L02, mRNA sequence /clone=C0003273_L02 /gb=AJ649856 /gi=49326701 /ug=Ssc.85632 /len=431"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0004175//endopeptidase activity	GO:0019538//protein metabolic process	"gi|109639153|ref|NP_001030326.1|/1.63422e-78/presenilins-associated rhomboid-like protein, mitochondrial precursor [Rattus norvegicus]"
gnl|UG|Ssc#S58312622	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa DNA-directed RNA polymerase III subunit RPC7-like (LOC100519356), mRNA /cds=p(191,862) /gb=XM_003123778 /gi=311249831 /ug=Ssc.41506 /len=1653"	GO:0044451//nucleoplasm part	-	"GO:0006355//regulation of transcription, DNA-dependent;GO:0031349//positive regulation of defense response;GO:0032481//positive regulation of type I interferon production"	gi|311249832|ref|XP_003123826.1|/1.2701e-62/PREDICTED: DNA-directed RNA polymerase III subunit RPC7-like [Sus scrofa]
gnl|UG|Ssc#S35168510	0	0	4	1.14	0	0	"Sus scrofa mRNA, clone:LVR010099H01, expressed in liver /gb=AK232613 /gi=115551180 /ug=Ssc.85827 /len=2271"	GO:0031981//nuclear lumen	GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0034062//RNA polymerase activity;GO:0001882//nucleoside binding	"GO:0051707//response to other organism;GO:0031016//pancreas development;GO:0031349//positive regulation of defense response;GO:0032481//positive regulation of type I interferon production;GO:0006353//transcription termination, DNA-dependent;GO:0006354//transcription elongation, DNA-dependent"	gi|73969955|ref|XP_531760.2|/0/PREDICTED: similar to DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide (RNA polymerase III subunit 2) (RPC2) [Canis familiaris]
gnl|UG|Ssc#S55321463	3	0.86	4	1.14	2	0.6	"Sus scrofa mRNA, clone:TES010067C11, expressed in testis /gb=AK351293 /gi=288783409 /ug=Ssc.32282 /len=1625"	-	GO:0005515//protein binding	-	gi|156120156|ref|NP_001095296.1|/0/protein Dom3Z [Sus scrofa]
gnl|UG|Ssc#S46877909	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa MAM domain containing glycosylphosphatidylinositol anchor 1 (MDGA1), mRNA /cds=p(1,2868) /gb=XM_001924567 /gi=194040440 /ug=Ssc.16325 /len=3641"	-	-	-	-
gnl|UG|Ssc#S58314416	6	1.73	0	0	4	1.2	"PREDICTED: Sus scrofa testis-specific kinase 1 (TESK1), mRNA /cds=p(1,1890) /gb=XM_003121984 /gi=311245980 /ug=Ssc.28477 /len=2183"	GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process;GO:0034330;GO:0048232//male gamete generation;GO:0006796//phosphate metabolic process	gi|311245981|ref|XP_003122032.1|/0/PREDICTED: dual specificity testis-specific protein kinase 1 [Sus scrofa]
gnl|UG|Ssc#S58329910	32	9.21	224	64.03	44	13.22	"Sus scrofa CEBPB mRNA for CCAAT enhancer binding protein beta, complete cds /cds=p(150,1190) /gb=AB569088 /gi=315360470 /ug=Ssc.32416 /len=1571"	GO:0034399//nuclear periphery	GO:0030528//transcription regulator activity;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0046983//protein dimerization activity;GO:0042802//identical protein binding;GO:0003677//DNA binding	GO:0032675//regulation of interleukin-6 production;GO:0002526//acute inflammatory response;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0050673//epithelial cell proliferation;GO:0045444//fat cell differentiation;GO:0012502//induction of programmed cell death;GO:0002376//immune system process;GO:0030855//epithelial cell differentiation;GO:0002237//response to molecule of bacterial origin;GO:0043066//negative regulation of apoptosis;GO:0001701//in utero embryonic development	gi|291415467|ref|XP_002723973.1|/2.28585e-106/PREDICTED: CCAAT/enhancer binding protein beta [Oryctolagus cuniculus]
gnl|UG|Ssc#S55277353	103	29.65	29	8.29	172	51.69	"FS701069 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010054A02 5', mRNA sequence /clone=PST010054A02 /clone_end=5' /gb=FS701069 /gi=288276499 /ug=Ssc.5237 /len=900"	-	-	-	-
gnl|UG|Ssc#S58308642	9	2.59	3	0.86	7	2.1	"PREDICTED: Sus scrofa peflin-like (LOC100520792), mRNA /cds=p(1,978) /gb=XM_003127768 /gi=311258831 /ug=Ssc.1669 /len=1713"	GO:0044424//intracellular part	GO:0046872//metal ion binding;GO:0046983//protein dimerization activity	GO:0010038//response to metal ion	gi|311258832|ref|XP_003127816.1|/0/PREDICTED: peflin-like [Sus scrofa]
gnl|UG|Ssc#S58314440	0	0	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein C9orf40-like (LOC100517993), mRNA /cds=p(224,811) /gb=XM_003121960 /gi=311245920 /ug=Ssc.22490 /len=1345"	-	-	-	gi|311245921|ref|XP_003122008.1|/8.93173e-101/PREDICTED: uncharacterized protein C9orf40-like [Sus scrofa]
gnl|UG|Ssc#S35169961	2	0.58	2	0.57	4	1.2	"Sus scrofa mRNA, clone:TES010060H04, expressed in testis /gb=AK238538 /gi=115549878 /ug=Ssc.17274 /len=1693"	-	-	-	-
gnl|UG|Ssc#S55321677	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:ITT010036G03, expressed in small intestine /gb=AK345010 /gi=288783195 /ug=Ssc.10615 /len=2358"	GO:0043231//intracellular membrane-bounded organelle	GO:0016301//kinase activity;GO:0032559	GO:0012501//programmed cell death;GO:0015980//energy derivation by oxidation of organic compounds	gi|311274120|ref|XP_003134197.1|/0/PREDICTED: LOW QUALITY PROTEIN: FAST kinase domain-containing protein 3-like [Sus scrofa]
gnl|UG|Ssc#S55273859	0	0	2	0.57	0	0	"FS670093 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10084A08 5', mRNA sequence /clone=HTMT10084A08 /clone_end=5' /gb=FS670093 /gi=288269719 /ug=Ssc.58734 /len=910"	GO:0043231//intracellular membrane-bounded organelle	GO:0003729//mRNA binding;GO:0043566//structure-specific DNA binding	GO:0006396//RNA processing;GO:0032897//negative regulation of viral transcription;GO:0048255//mRNA stabilization	gi|73950892|ref|XP_535409.2|/1.82681e-159/PREDICTED: similar to TAR DNA binding protein isoform 4 [Canis familiaris]
gnl|UG|Ssc#S40181680	35	10.08	105	30.01	19	5.71	"rjca02c_i4.y1 jca Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW276587 /gi=182621875 /ug=Ssc.48885 /len=514"	GO:0044464//cell part	GO:0004888//transmembrane receptor activity	-	gi|301782065|ref|XP_002926453.1|/1.22205e-42/PREDICTED: scavenger receptor cysteine-rich domain-containing protein LOC284297 homolog [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20936710	1206	347.21	2233	638.3	1529	459.51	"AJ648433 CSEQRAN19 Sus scrofa cDNA clone C0003264_K08, mRNA sequence /clone=C0003264_K08 /gb=AJ648433 /gi=49325278 /ug=Ssc.74118 /len=513"	GO:0005681//spliceosomal complex;GO:0044444//cytoplasmic part	GO:0003729//mRNA binding;GO:0005515//protein binding	GO:0006396//RNA processing	gi|296227473|ref|XP_002759394.1|/2.46235e-43/PREDICTED: polyadenylate-binding protein 1-like [Callithrix jacchus]
gnl|UG|Ssc#S55319598	2	0.58	3	0.86	0	0	"Sus scrofa mRNA, clone:LVRM10133B09, expressed in liver /gb=AK346293 /gi=288785286 /ug=Ssc.24109 /len=2123"	-	GO:0005488//binding	GO:0015031//protein transport;GO:0006875//cellular metal ion homeostasis	gi|215820630|ref|NP_115731.2|/0/vacuolar fusion protein MON1 homolog A isoform a [Homo sapiens]
gnl|UG|Ssc#S29971847	2	0.58	0	0	2	0.6	"PDUts1055G10 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1055G10 5' similar to homologue to ref|NM_032482.1| Homo sapiens DOT1-like, histone H3 methyltransferase (S. cerevisiae) (DOT1L), mRNA, mRNA sequence /clone=PDUts1055G10 /clone_end=5' /gb=CV868505 /gi=84122465 /ug=Ssc.88247 /len=636"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0016279//protein-lysine N-methyltransferase activity	GO:0016571//histone methylation	"gi|73987521|ref|XP_542191.2|/1.18507e-98/PREDICTED: similar to Histone-lysine N-methyltransferase, H3 lysine-79 specific (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (DOT1-like protein) [Canis familiaris]"
gnl|UG|Ssc#S46875801	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa polymerase (DNA directed), alpha 1, catalytic subunit (POLA1), partial mRNA /cds=p(1,2382) /gb=XM_001926713 /gi=311276060 /ug=Ssc.93426 /len=2382"	GO:0034399//nuclear periphery;GO:0044427;GO:0043234//protein complex;GO:0012505//endomembrane system	GO:0003899//DNA-directed RNA polymerase activity;GO:0000166//nucleotide binding;GO:0046983//protein dimerization activity;GO:0043169//cation binding;GO:0034061;GO:0043566//structure-specific DNA binding	GO:0000726;GO:0051320;GO:0007165//signal transduction;GO:0000723//telomere maintenance;GO:0000082//G1/S transition of mitotic cell cycle;GO:0051704;GO:0006271//DNA strand elongation involved in DNA replication	"gi|311276061|ref|XP_001926748.2|/0/PREDICTED: DNA polymerase alpha catalytic subunit-like, partial [Sus scrofa]"
gnl|UG|Ssc#S6090771	11	3.17	3	0.86	29	8.72	"Sus scrofa mRNA for thyroid hormone receptor alpha 2 (c-erbA-alpha 2) /cds=p(137,1657) /gb=AJ005798 /gi=4138569 /ug=Ssc.31357 /len=2034"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0030528//transcription regulator activity;GO:0042562//hormone binding;GO:0004879//ligand-dependent nuclear receptor activity;GO:0008134//transcription factor binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0044212//transcription regulatory region DNA binding;GO:0003727//single-stranded RNA binding;GO:0042802//identical protein binding;GO:0043565//sequence-specific DNA binding;GO:0046914//transition metal ion binding;GO:0046983//protein dimerization activity	GO:0002154;GO:0009894;GO:0007619//courtship behavior;GO:0044057;GO:0043392//negative regulation of DNA binding;GO:0016337//cell-cell adhesion;GO:0009653//anatomical structure morphogenesis;GO:0042981//regulation of apoptosis;GO:0030099//myeloid cell differentiation;GO:0010830;GO:0035270//endocrine system development;GO:0042992//negative regulation of transcription factor import into nucleus;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0009991//response to extracellular stimulus;GO:0007417//central nervous system development;GO:0030323//respiratory tube development;GO:0006950//response to stress;GO:0045924//regulation of female receptivity	gi|13124576|sp|O97716.1|THA_PIG/0/RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1; AltName: Full=c-erbA-1; AltName: Full=c-erbA-alpha
gnl|UG|Ssc#S58301367	565	162.67	302	86.33	631	189.63	"PREDICTED: Sus scrofa ATP-dependent RNA helicase DDX3X-like, transcript variant 1 (LOC100515940), mRNA /cds=p(94,2082) /gb=XM_003135027 /gi=311276165 /ug=Ssc.6702 /len=4647"	GO:0016604//nuclear body	"GO:0003724//RNA helicase activity;GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0051704	gi|62087546|dbj|BAD92220.1|/0/DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo sapiens]
gnl|UG|Ssc#S18387558	566	162.95	399	114.05	317	95.27	"938993 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK467671 /gi=40838948 /ug=Ssc.6015 /len=905"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0004725//protein tyrosine phosphatase activity;GO:0019904//protein domain specific binding	GO:0006464//protein modification process;GO:0009888//tissue development	"gi|296488553|gb|DAA30666.1|/5.29401e-18/protein tyrosine phosphatase, non-receptor type 12 [Bos taurus]"
gnl|UG|Ssc#S55321154	10	2.88	7	2	5	1.5	"Sus scrofa mRNA, clone:LNG010005E01, expressed in lung /gb=AK345333 /gi=288783718 /ug=Ssc.49233 /len=2855"	GO:0031224//intrinsic to membrane	GO:0046872//metal ion binding	GO:0016337//cell-cell adhesion	gi|62752048|ref|NP_001015550.1|/0/cadherin-16 [Bos taurus]
gnl|UG|Ssc#S58308347	4	1.15	3	0.86	0	0	"PREDICTED: Sus scrofa HECT domain containing 3 (HECTD3), mRNA /cds=p(1,2586) /gb=XM_003128050 /gi=311259435 /ug=Ssc.44083 /len=3439"	GO:0044444//cytoplasmic part;GO:0000152//nuclear ubiquitin ligase complex	GO:0000149//SNARE binding;GO:0019787//small conjugating protein ligase activity	GO:0006511//ubiquitin-dependent protein catabolic process;GO:0007088//regulation of mitosis;GO:0016567//protein ubiquitination	gi|311259436|ref|XP_003128098.1|/0/PREDICTED: e3 ubiquitin-protein ligase HECTD3-like [Sus scrofa]
gnl|UG|Ssc#S35169054	2	0.58	4	1.14	3	0.9	"Sus scrofa mRNA, clone:OVRM10120H12, expressed in ovary /gb=AK235860 /gi=115550785 /ug=Ssc.3824 /len=1820"	GO:0008023//transcription elongation factor complex	GO:0003723//RNA binding;GO:0004674//protein serine/threonine kinase activity;GO:0043565//sequence-specific DNA binding;GO:0032559	"GO:0006796//phosphate metabolic process;GO:0006352//transcription initiation, DNA-dependent;GO:0045935;GO:0006354//transcription elongation, DNA-dependent;GO:0006464//protein modification process"	gi|260447071|ref|NP_001159516.1|/0/cell division protein kinase 9 [Sus scrofa]
gnl|UG|Ssc#S40331612	278	80.04	105	30.01	70	21.04	"rnca04b_c10.y1 nca Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW426219 /gi=182824558 /ug=Ssc.58964 /len=459"	-	-	-	gi|119625564|gb|EAX05159.1|/2.60747e-16/hCG1820575 [Homo sapiens]
gnl|UG|Ssc#S58308547	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa establishment of cohesion 1 homolog 1 (S. cerevisiae) (ESCO1), mRNA /cds=p(468,2999) /gb=XM_003127852 /gi=311259025 /ug=Ssc.38690 /len=3169"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427	"GO:0043169//cation binding;GO:0016747//transferase activity, transferring acyl groups other than amino-acyl groups;GO:0003677//DNA binding"	GO:0006473//protein acetylation;GO:0006260//DNA replication	gi|311259026|ref|XP_003127900.1|/0/PREDICTED: n-acetyltransferase ESCO1-like [Sus scrofa]
gnl|UG|Ssc#S58302377	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa cell cycle checkpoint protein RAD17-like (LOC100515763), mRNA /cds=p(102,2216) /gb=XM_003134020 /gi=311273847 /ug=Ssc.21361 /len=2683"	GO:0044427;GO:0031981//nuclear lumen	GO:0016462//pyrophosphatase activity;GO:0032559	GO:0000075//cell cycle checkpoint;GO:0006260//DNA replication;GO:0016310//phosphorylation;GO:0007165//signal transduction;GO:0006974//response to DNA damage stimulus	gi|311273848|ref|XP_003134068.1|/0/PREDICTED: cell cycle checkpoint protein RAD17-like [Sus scrofa]
gnl|UG|Ssc#S6077133	2	0.58	0	0	0	0	"UNL-P-FN-ce-h-08-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-ce-h-08-0-UNL 3', mRNA sequence /clone=UNL-P-FN-ce-h-08-0-UNL /clone_end=3' /gb=BI183934 /gi=14658343 /ug=Ssc.964 /len=731"	-	-	GO:0044238//primary metabolic process;GO:0044260;GO:0050794//regulation of cellular process	gi|194215459|ref|XP_001916154.1|/8.18003e-41/PREDICTED: similar to SERTA domain containing 1 [Equus caballus]
gnl|UG|Ssc#S55322736	14	4.03	4	1.14	12	3.61	"Sus scrofa mRNA, clone:DCI010020A07, expressed in dendritic cells (immature) /gb=AK344347 /gi=288782136 /ug=Ssc.11365 /len=3505"	GO:0044464//cell part	GO:0005099//Ras GTPase activator activity;GO:0016301//kinase activity;GO:0032559	GO:0032313//regulation of Rab GTPase activity;GO:0006464//protein modification process	gi|74002063|ref|XP_545015.2|/0/PREDICTED: similar to CG4041-PA isoform 1 [Canis familiaris]
gnl|UG|Ssc#S55325862	26	7.49	23	6.57	36	10.82	"Sus scrofa mRNA, clone:PBL010028A12, expressed in peripheral blood mononuclear cells /gb=AK348789 /gi=288778964 /ug=Ssc.4104 /len=2210"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	GO:0012501//programmed cell death;GO:0009968//negative regulation of signal transduction;GO:0006110//regulation of glycolysis;GO:0032984;GO:0006950//response to stress	gi|194042790|ref|XP_001925310.1|/1.37467e-86/PREDICTED: DNA damage-inducible transcript 4 protein-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46880063	106	30.52	51	14.58	38	11.42	"PREDICTED: Sus scrofa hepatoma-derived growth factor-like (LOC100153512), mRNA /cds=p(1,1386) /gb=XM_001924643 /gi=311254095 /ug=Ssc.21553 /len=2748"	GO:0044421//extracellular region part;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0005539//glycosaminoglycan binding;GO:0005102//receptor binding	GO:0023052//signaling	gi|311254096|ref|XP_001924678.2|/0/PREDICTED: hepatoma-derived growth factor-like [Sus scrofa]
gnl|UG|Ssc#S58306590	0	0	6	1.72	4	1.2	"PREDICTED: Sus scrofa uncharacterized protein C11orf70 homolog (LOC100520444), mRNA /cds=p(31,834) /gb=XM_003129807 /gi=311263806 /ug=Ssc.39770 /len=1246"	-	-	-	gi|311263807|ref|XP_003129855.1|/3.32966e-155/PREDICTED: uncharacterized protein C11orf70 homolog [Sus scrofa]
gnl|UG|Ssc#S58303282	3	0.86	3	0.86	0	0	"PREDICTED: Sus scrofa WASH complex subunit FAM21A-like (LOC100522401), mRNA /cds=p(89,4102) /gb=XM_003133111 /gi=311271519 /ug=Ssc.18277 /len=4556"	GO:0005768//endosome;GO:0043234//protein complex;GO:0016020//membrane	GO:0005488//binding	GO:0016197//endosome transport	gi|311271520|ref|XP_003133159.1|/0/PREDICTED: WASH complex subunit FAM21A-like [Sus scrofa]
gnl|UG|Ssc#S55319252	9	2.59	0	0	12	3.61	"Sus scrofa mRNA, clone:LVRM10180B08, expressed in liver /gb=AK346440 /gi=288785632 /ug=Ssc.21828 /len=2105"	GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0015119	GO:0015712//hexose phosphate transport;GO:0033500//carbohydrate homeostasis;GO:0019318//hexose metabolic process	"gi|73954652|ref|XP_859969.1|/0/PREDICTED: similar to Glucose 6-phosphate translocase (Glucose 5-phosphate transporter) (Solute carrier family 37, member 4) isoform 3 [Canis familiaris]"
gnl|UG|Ssc#S40282724	0	0	3	0.86	0	0	"rmcp34c_p7.y1 mcp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW377631 /gi=182713616 /ug=Ssc.61551 /len=575"	-	GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	"gi|296486370|gb|DAA28483.1|/1.47771e-59/AF4/FMR2 family, member 1 isoform 2 [Bos taurus]"
gnl|UG|Ssc#S40065062	11	3.17	2	0.57	11	3.31	"rfat0137_b12.y1 fat Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW159969 /gi=182556804 /ug=Ssc.63009 /len=669"	-	-	-	-
gnl|UG|Ssc#S58310339	0	0	0	0	0	0	"PREDICTED: Sus scrofa FAD-dependent oxidoreductase domain-containing protein 2-like (LOC100513010), mRNA /cds=p(662,2725) /gb=XM_003126045 /gi=311255160 /ug=Ssc.49187 /len=2725"	GO:0044432//endoplasmic reticulum part	GO:0050662//coenzyme binding;GO:0003824//catalytic activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process	gi|311255161|ref|XP_003126093.1|/0/PREDICTED: FAD-dependent oxidoreductase domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S55256718	50	14.4	48	13.72	26	7.81	"FS649549 full-length enriched swine cDNA library, adult back fat Sus scrofa cDNA clone BKFL10026C07 5', mRNA sequence /clone=BKFL10026C07 /clone_end=5' /gb=FS649549 /gi=288255286 /ug=Ssc.77738 /len=431"	-	-	-	gi|292630325|ref|XP_002667834.1|/4.4947e-07/PREDICTED: superkiller viralicidic activity 2-like [Danio rerio]
gnl|UG|Ssc#S55327822	2	0.58	10	2.86	3	0.9	"Sus scrofa iron-responsive element binding protein 2 (IREB2), mRNA /cds=p(80,2974) /gb=NM_001167781 /gi=268607630 /ug=Ssc.25315 /len=3476"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0003729//mRNA binding;GO:0051536//iron-sulfur cluster binding;GO:0045182//translation regulator activity	GO:0006412//translation;GO:0006875//cellular metal ion homeostasis;GO:0006779//porphyrin biosynthetic process;GO:0007275//multicellular organismal development;GO:0048872//homeostasis of number of cells;GO:0022600//digestive system process	gi|268607631|ref|NP_001161253.1|/0/iron-responsive element-binding protein 2 [Sus scrofa]
gnl|UG|Ssc#S58305200	43	12.38	36	10.29	28	8.41	"PREDICTED: Sus scrofa tripartite motif-containing 47 (TRIM47), mRNA /cds=p(1,1941) /gb=XM_003131190 /gi=311266771 /ug=Ssc.60850 /len=2745"	GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding	-	gi|311266772|ref|XP_003131238.1|/0/PREDICTED: tripartite motif-containing protein 47-like [Sus scrofa]
gnl|UG|Ssc#S20116273	0	0	0	0	4	1.2	"Sus scrofa transcription factor GATA-6 (GATA-6), mRNA /cds=p(16,1356) /gb=NM_214328 /gi=47523717 /ug=Ssc.2258 /len=2643"	GO:0031981//nuclear lumen;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0019900//kinase binding;GO:0043566//structure-specific DNA binding;GO:0043565//sequence-specific DNA binding;GO:0046914//transition metal ion binding;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity	GO:0002065;GO:0006915//apoptosis;GO:0060487//lung epithelial cell differentiation;GO:0042692//muscle cell differentiation;GO:0008406//gonad development;GO:0045765//regulation of angiogenesis;GO:0043009//chordate embryonic development;GO:0032870//cellular response to hormone stimulus;GO:0032906;GO:0019637//organophosphate metabolic process;GO:0042476//odontogenesis;GO:0001666//response to hypoxia;GO:0045597//positive regulation of cell differentiation;GO:0030509//BMP signaling pathway;GO:0003151//outflow tract morphogenesis;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0007599//hemostasis;GO:0007050//cell cycle arrest;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0048545//response to steroid hormone stimulus;GO:0035051//cardiac cell differentiation;GO:0032905	gi|215274026|sp|Q95JA5.2|GATA6_PIG/0/RecName: Full=Transcription factor GATA-6; AltName: Full=GATA-binding factor 6
gnl|UG|Ssc#S58313419	2	0.58	3	0.86	3	0.9	"PREDICTED: Sus scrofa SET binding factor 2 (SBF2), mRNA /cds=p(1,5550) /gb=XM_003122980 /gi=311248211 /ug=Ssc.42470 /len=5550"	GO:0044424//intracellular part	GO:0042578//phosphoric ester hydrolase activity;GO:0005488//binding	GO:0008366//axon ensheathment;GO:0006796//phosphate metabolic process	gi|311248212|ref|XP_003123028.1|/0/PREDICTED: myotubularin-related protein 13-like [Sus scrofa]
gnl|UG|Ssc#S18385238	6	1.73	4	1.14	3	0.9	"936453 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK465351 /gi=40836628 /ug=Ssc.1438 /len=880"	-	-	-	-
gnl|UG|Ssc#S55319621	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LVRM10126A07, expressed in liver /gb=AK346270 /gi=288785263 /ug=Ssc.21135 /len=1700"	GO:0000323//lytic vacuole;GO:0044459//plasma membrane part;GO:0008021//synaptic vesicle	GO:0046914//transition metal ion binding;GO:0003824//catalytic activity	-	gi|14150005|ref|NP_115644.1|/8.32139e-134/E3 ubiquitin-protein ligase ZNRF1 [Homo sapiens]
gnl|UG|Ssc#S17525473	35	10.08	8	2.29	20	6.01	"BX674614 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0044.i.03 5prim, mRNA sequence /clone=scac0044.i.03 /clone_end=5' /gb=BX674614 /gi=90226975 /ug=Ssc.46795 /len=844"	GO:0031981//nuclear lumen	GO:0046983//protein dimerization activity;GO:0003711//transcription elongation regulator activity	GO:0016568//chromatin modification;GO:0019079//viral genome replication;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006368//transcription elongation from RNA polymerase II promoter;GO:0042221//response to chemical stimulus;GO:0006397//mRNA processing;GO:0045935	gi|301784031|ref|XP_002927427.1|/7.24625e-136/PREDICTED: transcription elongation factor SPT5-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35168762	74	21.3	50	14.29	84	25.24	"Sus scrofa mRNA, clone:THY010031A05, expressed in thymus /gb=AK238790 /gi=115550929 /ug=Ssc.16563 /len=1133"	-	-	-	-
gnl|UG|Ssc#S55325101	13	3.74	22	6.29	20	6.01	"Sus scrofa mRNA, clone:PTG010090B07, expressed in pituitary gland /gb=AK349507 /gi=288779771 /ug=Ssc.64382 /len=1368"	GO:0016020//membrane	-	-	gi|296485532|gb|DAA27647.1|/4.25099e-90/proline-rich protein 7-like isoform 2 [Bos taurus]
gnl|UG|Ssc#S58310804	5	1.44	5	1.43	7	2.1	"PREDICTED: Sus scrofa telomeric repeat binding factor (NIMA-interacting) 1 (TERF1), mRNA /cds=p(43,1353) /gb=XM_003125594 /gi=311253732 /ug=Ssc.6961 /len=2033"	GO:0031981//nuclear lumen;GO:0000782;GO:0015630//microtubule cytoskeleton	GO:0046983//protein dimerization activity;GO:0016505//apoptotic protease activator activity;GO:0042802//identical protein binding;GO:0043565//sequence-specific DNA binding;GO:0015631//tubulin binding;GO:0003690//double-stranded DNA binding;GO:0004857//enzyme inhibitor activity	GO:0001304;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0051259//protein oligomerization;GO:0031112;GO:0006915//apoptosis;GO:0012502//induction of programmed cell death;GO:0051348//negative regulation of transferase activity;GO:0007004//telomere maintenance via telomerase;GO:0032201//telomere maintenance via semi-conservative replication	gi|311253733|ref|XP_003125642.1|/0/PREDICTED: telomeric repeat-binding factor 1-like [Sus scrofa]
gnl|UG|Ssc#S35168038	107	30.81	88	25.15	82	24.64	"Sus scrofa mRNA, clone:THY010064E05, expressed in thymus /gb=AK239116 /gi=115551652 /ug=Ssc.45494 /len=2191"	GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0000267//cell fraction;GO:0005635//nuclear envelope;GO:0016020//membrane	"GO:0016811//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559"	GO:0006418//tRNA aminoacylation for protein translation;GO:0065003	"gi|311272131|ref|XP_003133314.1|/0/PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]"
gnl|UG|Ssc#S58301684	37	10.65	11	3.14	29	8.72	"PREDICTED: Sus scrofa hypothetical protein LOC100521415 (LOC100521415), mRNA /cds=p(1,2412) /gb=XM_003134712 /gi=311275478 /ug=Ssc.85262 /len=2412"	GO:0031332;GO:0048770	"GO:0000989//transcription factor binding transcription factor activity;GO:0005488//binding;GO:0016788//hydrolase activity, acting on ester bonds"	"GO:0016458//gene silencing;GO:0051704;GO:0006351//transcription, DNA-dependent"	gi|311275479|ref|XP_003134760.1|/0/PREDICTED: hypothetical protein LOC100521415 [Sus scrofa]
gnl|UG|Ssc#S58309105	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 (PPFIA3), mRNA /cds=p(1,2274) /gb=XM_003127297 /gi=311257887 /ug=Ssc.87005 /len=2274"	GO:0044424//intracellular part	GO:0005488//binding	GO:0001505//regulation of neurotransmitter levels;GO:0048168//regulation of neuronal synaptic plasticity	gi|311257888|ref|XP_003127345.1|/0/PREDICTED: liprin-alpha-3-like [Sus scrofa]
gnl|UG|Ssc#S35168698	25	7.2	10	2.86	23	6.91	"Sus scrofa mRNA, clone:THY010037F07, expressed in thymus /gb=AK238853 /gi=115550992 /ug=Ssc.24092 /len=1474"	-	-	-	gi|311268970|ref|XP_003132286.1|/0/PREDICTED: putative RNA-binding protein 15B-like [Sus scrofa]
gnl|UG|Ssc#S55324180	3	0.86	8	2.29	3	0.9	"Sus scrofa mRNA, clone:SMG010038B03, expressed in submaxillary gland /gb=AK350028 /gi=288780692 /ug=Ssc.56627 /len=1778"	GO:0044424//intracellular part	GO:0008047//enzyme activator activity;GO:0005515//protein binding	GO:0050896//response to stimulus;GO:0043462//regulation of ATPase activity	gi|194220703|ref|XP_001495758.2|/1.49808e-149/PREDICTED: similar to RIKEN cDNA 1110064P04 [Equus caballus]
gnl|UG|Ssc#S55325584	72	20.73	2	0.57	34	10.22	"Sus scrofa mRNA, clone:PCT010016E10, expressed in placenta /gb=AK349067 /gi=288779242 /ug=Ssc.29580 /len=757"	GO:0031981//nuclear lumen	GO:0005488//binding;GO:0019887//protein kinase regulator activity	GO:0051726//regulation of cell cycle;GO:0019222//regulation of metabolic process;GO:0051320;GO:0016310//phosphorylation	gi|311252084|ref|XP_003124916.1|/1.04768e-48/PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S35173868	2	0.58	0	0	3	0.9	"Sus scrofa mRNA, clone:SPL010037C05, expressed in spleen /gb=AK237408 /gi=115545967 /ug=Ssc.3098 /len=1891"	-	-	-	-
gnl|UG|Ssc#S6077271	15	4.32	16	4.57	7	2.1	"UNL-P-FN-ct-d-10-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-ct-d-10-0-UNL 3', mRNA sequence /clone=UNL-P-FN-ct-d-10-0-UNL /clone_end=3' /gb=BI185282 /gi=14659691 /ug=Ssc.17847 /len=745"	-	-	-	gi|134085797|ref|NP_001076870.1|/9.57114e-26/protein kinase C delta-binding protein [Bos taurus]
gnl|UG|Ssc#S35169809	29	8.35	7	2	28	8.41	"Sus scrofa mRNA, clone:LVR010010A11, expressed in liver /gb=AK232265 /gi=115550030 /ug=Ssc.54634 /len=1054"	-	GO:0070739;GO:0019787//small conjugating protein ligase activity;GO:0032559	GO:0043065//positive regulation of apoptosis;GO:0032446//protein modification by small protein conjugation	gi|73947229|ref|XP_541337.2|/2.32728e-103/PREDICTED: similar to ubiquitin-conjugating enzyme E2M [Canis familiaris]
gnl|UG|Ssc#S55324534	46	13.24	13	3.72	42	12.62	"Sus scrofa mRNA, clone:SKNB10076D06, expressed in skin /gb=AK349872 /gi=288780338 /ug=Ssc.13767 /len=2853"	GO:0005856//cytoskeleton;GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0008187//poly-pyrimidine tract binding	GO:0010468//regulation of gene expression;GO:0000377	gi|73970359|ref|XP_856674.1|/7.66986e-125/PREDICTED: similar to heterogeneous nuclear ribonucleoprotein H1 isoform 10 [Canis familiaris]
gnl|UG|Ssc#S58314239	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa golgin A1 (GOLGA1), mRNA /cds=p(327,2639) /gb=XM_003122165 /gi=311246446 /ug=Ssc.28654 /len=3263"	GO:0016020//membrane;GO:0044431//Golgi apparatus part	GO:0005488//binding	-	gi|311246447|ref|XP_003122213.1|/0/PREDICTED: Golgin subfamily A member 1-like [Sus scrofa]
gnl|UG|Ssc#S46880408	4	1.15	11	3.14	9	2.7	"PREDICTED: Sus scrofa pleckstrin homology domain interacting protein (PHIP), mRNA /cds=p(183,911) /gb=XM_001926206 /gi=311244440 /ug=Ssc.88172 /len=911"	GO:0043231//intracellular membrane-bounded organelle	GO:0005102//receptor binding	GO:0009967//positive regulation of signal transduction;GO:0006468//protein phosphorylation;GO:0006915//apoptosis;GO:0007088//regulation of mitosis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0008283//cell proliferation	gi|296484265|gb|DAA26380.1|/3.698e-144/bromodomain and WD repeat domain containing 1-like [Bos taurus]
gnl|UG|Ssc#S55319738	0	0	0	0	8	2.4	"Sus scrofa mRNA, clone:LVRM10079A06, expressed in liver /gb=AK346153 /gi=288785146 /ug=Ssc.45451 /len=1337"	-	-	-	"gi|119606579|gb|EAW86173.1|/6.32891e-14/hCG21545, isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S23213328	0	0	0	0	4	1.2	"Sus scrofa clone Clu_25225.scr.msk.p1.Contig4, mRNA sequence /gb=AY609680 /gi=52351248 /ug=Ssc.891 /len=1443"	GO:0043231//intracellular membrane-bounded organelle	GO:0003824//catalytic activity;GO:0043169//cation binding	-	gi|311252000|ref|XP_003124873.1|/2.54164e-165/PREDICTED: fumarylacetoacetate hydrolase domain-containing protein 2A-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58309029	7	2.02	0	0	2	0.6	"PREDICTED: Sus scrofa UPF0510 protein INM02-like (LOC100526111), mRNA /cds=p(29,817) /gb=XM_003127366 /gi=311258041 /ug=Ssc.23128 /len=1672"	GO:0031224//intrinsic to membrane	-	-	gi|311258042|ref|XP_003127414.1|/1.97101e-79/PREDICTED: UPF0510 protein INM02-like [Sus scrofa]
gnl|UG|Ssc#S55322560	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:DCI010068F06, expressed in dendritic cells (immature) /gb=AK344523 /gi=288782312 /ug=Ssc.34211 /len=2220"	GO:0043231//intracellular membrane-bounded organelle	GO:0048037//cofactor binding	-	gi|311272381|ref|XP_003133417.1|/1.61817e-137/PREDICTED: proline synthase co-transcribed bacterial homolog protein-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35166799	440	126.68	115	32.87	243	73.03	"Sus scrofa mRNA, clone:THY010111D11, expressed in thymus /gb=AK239534 /gi=115552940 /ug=Ssc.16431 /len=1485"	-	-	-	-
gnl|UG|Ssc#S40322364	0	0	2	0.57	2	0.6	"rnbm35b_d22.y1 nbm Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW416971 /gi=182845993 /ug=Ssc.68937 /len=592"	-	-	-	-
gnl|UG|Ssc#S58313074	42	12.09	6	1.72	13	3.91	"PREDICTED: Sus scrofa ATPase ASNA1-like (LOC100520362), mRNA /cds=p(27,1073) /gb=XM_003123324 /gi=311248910 /ug=Ssc.11576 /len=1397"	GO:0031981//nuclear lumen;GO:0000267//cell fraction	GO:0015103//inorganic anion transmembrane transporter activity;GO:0043169//cation binding;GO:0019829//cation-transporting ATPase activity;GO:0032559	GO:0010035//response to inorganic substance;GO:0015698//inorganic anion transport;GO:0030003//cellular cation homeostasis	gi|12025542|ref|NP_062626.1|/1.12437e-178/ATPase Asna1 [Mus musculus]
gnl|UG|Ssc#S23696300	10	2.88	13	3.72	9	2.7	"1104849 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN107403 /gi=59782666 /ug=Ssc.52148 /len=820"	-	-	-	-
gnl|UG|Ssc#S58306474	3	0.86	5	1.43	3	0.9	"PREDICTED: Sus scrofa vacuolar protein sorting 11 homolog (S. cerevisiae) (VPS11), mRNA /cds=p(1,2826) /gb=XM_003129923 /gi=311264043 /ug=Ssc.4353 /len=3180"	GO:0005770//late endosome;GO:0005764//lysosome;GO:0005774//vacuolar membrane;GO:0031410//cytoplasmic vesicle;GO:0015629//actin cytoskeleton	GO:0046914//transition metal ion binding	GO:0006810//transport	gi|311264044|ref|XP_003129971.1|/0/PREDICTED: vacuolar protein sorting-associated protein 11 homolog [Sus scrofa]
gnl|UG|Ssc#S18359295	2	0.58	0	0	0	0	"915243 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK454736 /gi=40801950 /ug=Ssc.27280 /len=888"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043566//structure-specific DNA binding	"GO:0006355//regulation of transcription, DNA-dependent"	gi|301772092|ref|XP_002921461.1|/2.23916e-122/PREDICTED: msx2-interacting protein-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58308030	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa peptidyl-prolyl cis-trans isomerase-like 1-like (LOC100524445), mRNA /cds=p(768,1268) /gb=XM_003128368 /gi=311260326 /ug=Ssc.24228 /len=2245"	GO:0005681//spliceosomal complex	GO:0016859//cis-trans isomerase activity	GO:0000377;GO:0044267//cellular protein metabolic process	"gi|258588180|pdb|2K7N|A/5.31968e-86/Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip"
gnl|UG|Ssc#S35167358	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10187F10, expressed in ovary /gb=AK236386 /gi=115552381 /ug=Ssc.4491 /len=1945"	-	GO:0032561	-	gi|75057688|sp|Q58DD9.1|GPN2_PIG/1.85715e-132/RecName: Full=GPN-loop GTPase 2; AltName: Full=ATP-binding domain 1 family member B 
gnl|UG|Ssc#S14959900	4	1.15	0	0	0	0	"Sus scrofa transcription factor GATA-2 mRNA, complete cds /cds=p(256,1698) /gb=AY251012 /gi=29470192 /ug=Ssc.4743 /len=2586"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0021536//diencephalon development;GO:0007599//hemostasis;GO:0045165//cell fate commitment;GO:0021700//developmental maturation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0045765//regulation of angiogenesis;GO:0045807//positive regulation of endocytosis;GO:0001701//in utero embryonic development	gi|47523100|ref|NP_999044.1|/0/endothelial transcription factor GATA-2 [Sus scrofa]
gnl|UG|Ssc#S58306543	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa dixin-like (LOC100520320), mRNA /cds=p(1,2457) /gb=XM_003129869 /gi=311263903 /ug=Ssc.89042 /len=2978"	GO:0032991//macromolecular complex;GO:0044297//cell body;GO:0033267//axon part;GO:0005924//cell-substrate adherens junction;GO:0044424//intracellular part	GO:0008092//cytoskeletal protein binding;GO:0060089;GO:0019901//protein kinase binding	GO:0043410//positive regulation of MAPKKK cascade;GO:0031346//positive regulation of cell projection organization;GO:0021549//cerebellum development;GO:0007166//cell surface receptor linked signaling pathway	gi|311263904|ref|XP_003129917.1|/0/PREDICTED: dixin-like [Sus scrofa]
gnl|UG|Ssc#S55324808	25	7.2	33	9.43	27	8.11	"Sus scrofa mRNA, clone:SKNB10057E07, expressed in skin /gb=AK349799 /gi=288780064 /ug=Ssc.49294 /len=1447"	-	-	-	gi|90079493|dbj|BAE89426.1|/3.42687e-08/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S40193329	45	12.96	16	4.57	50	15.03	"rjej09b_p20.y1 jej Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW288236 /gi=182477811 /ug=Ssc.6672 /len=661"	GO:0005740//mitochondrial envelope;GO:0019866//organelle inner membrane;GO:0031224//intrinsic to membrane	-	-	"gi|149040331|gb|EDL94369.1|/5.02105e-26/upregulated during skeletal muscle growth 5, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S41350327	115	33.11	156	44.59	70	21.04	"Sus scrofa pre-B-cell colony-enhancing factor variant 6 (PBEF1) mRNA sequence, alternatively spliced /gb=EU127843 /gi=157838806 /ug=Ssc.22083 /len=2997"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0016763//transferase activity, transferring pentosyl groups;GO:0042802//identical protein binding;GO:0005102//receptor binding"	GO:0009888//tissue development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0019359;GO:0008284//positive regulation of cell proliferation;GO:0007154//cell communication;GO:0022414//reproductive process;GO:0010557;GO:0010033//response to organic substance;GO:0009820//alkaloid metabolic process	gi|72535204|ref|NP_001026963.1|/0/nicotinamide phosphoribosyltransferase [Sus scrofa]
gnl|UG|Ssc#S58310278	0	0	3	0.86	8	2.4	"PREDICTED: Sus scrofa PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae), transcript variant 1 (PRPF40B), mRNA /cds=p(1,2619) /gb=XM_003126117 /gi=311255295 /ug=Ssc.25228 /len=2633"	GO:0005634//nucleus	-	GO:0006396//RNA processing	gi|311255296|ref|XP_003126165.1|/0/PREDICTED: pre-mRNA-processing factor 40 homolog B-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46880678	11	3.17	16	4.57	4	1.2	"PREDICTED: Sus scrofa pygopus homolog 1-like (LOC100156479), mRNA /cds=p(1,1887) /gb=XM_001925717 /gi=311244688 /ug=Ssc.94154 /len=1887"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0048513//organ development	gi|311244689|ref|XP_001925752.2|/0/PREDICTED: pygopus homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S19541462	7	2.02	2	0.57	2	0.6	"946273 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN157558 /gi=46171988 /ug=Ssc.26846 /len=911"	GO:0044459//plasma membrane part;GO:0031252//cell leading edge;GO:0005624//membrane fraction;GO:0044444//cytoplasmic part;GO:0034518	GO:0003779//actin binding;GO:0017048//Rho GTPase binding	GO:0048731;GO:0048588//developmental cell growth;GO:0030031//cell projection assembly	gi|559703|dbj|BAA07552.1|/2.64403e-150/KIAA0068 [Homo sapiens]
gnl|UG|Ssc#S35166974	0	0	0	0	4	1.2	"Sus scrofa mRNA, clone:THY010096C12, expressed in thymus /gb=AK239358 /gi=115552765 /ug=Ssc.46514 /len=1782"	GO:0005815//microtubule organizing center	-	GO:0022402//cell cycle process	"gi|301765603|ref|XP_002918223.1|/5.06798e-97/PREDICTED: serologically defined colon cancer antigen 8-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S35170532	29	8.35	20	5.72	21	6.31	"Sus scrofa mRNA, clone:OVRM10059G02, expressed in ovary /gb=AK235228 /gi=115549307 /ug=Ssc.1490 /len=1624"	GO:0043234//protein complex;GO:0005768//endosome	"GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;GO:0016757//transferase activity, transferring glycosyl groups;GO:0016209//antioxidant activity;GO:0004869//cysteine-type endopeptidase inhibitor activity;GO:0016668//oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor;GO:0019900//kinase binding"	"GO:0030097//hemopoiesis;GO:0043549//regulation of kinase activity;GO:0055086//nucleobase, nucleoside and nucleotide metabolic process;GO:0042743//hydrogen peroxide metabolic process;GO:0008283//cell proliferation;GO:0051091//positive regulation of transcription factor activity;GO:0001890//placenta development;GO:0000302//response to reactive oxygen species;GO:0006996//organelle organization;GO:0002237//response to molecule of bacterial origin;GO:0042391//regulation of membrane potential;GO:0043066//negative regulation of apoptosis;GO:0010466//negative regulation of peptidase activity"	"gi|194042132|ref|XP_001928549.1|/2.89656e-136/PREDICTED: thioredoxin-dependent peroxide reductase, mitochondrial isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S29971699	161	46.35	31	8.86	208	62.51	"PDUts1054A08 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1054A08 5' similar to homologue to ref|NM_080746.2| Homo sapiens ribosomal protein L10-like (RPL10L), mRNA, mRNA sequence /clone=PDUts1054A08 /clone_end=5' /gb=CV868357 /gi=84122317 /ug=Ssc.95165 /len=659"	GO:0043231//intracellular membrane-bounded organelle;GO:0015934//large ribosomal subunit	GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0048232//male gamete generation	gi|311245451|ref|XP_003121835.1|/5.58715e-118/PREDICTED: 60S ribosomal protein L10-like [Sus scrofa]
gnl|UG|Ssc#S58301118	8	2.3	0	0	0	0	"PREDICTED: Sus scrofa glycine receptor subunit alpha-4-like (LOC100525376), mRNA /cds=p(353,1726) /gb=XM_003135271 /gi=311276711 /ug=Ssc.93565 /len=1726"	GO:0044459//plasma membrane part;GO:0034702	GO:0005253//anion channel activity;GO:0004871//signal transducer activity;GO:0016597//amino acid binding;GO:0005237//inhibitory extracellular ligand-gated ion channel activity	GO:0001101//response to acid;GO:0023052//signaling;GO:0015698//inorganic anion transport;GO:0050767//regulation of neurogenesis	gi|311276712|ref|XP_003135319.1|/0/PREDICTED: glycine receptor subunit alpha-4-like [Sus scrofa]
gnl|UG|Ssc#S46878664	5	1.44	0	0	7	2.1	"PREDICTED: Sus scrofa solute carrier family 22 member 17-like (LOC100152841), mRNA /cds=p(337,2040) /gb=XM_001928918 /gi=311260990 /ug=Ssc.2181 /len=2387"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane	GO:0004872//receptor activity;GO:0005215//transporter activity	GO:0015688//iron chelate transport;GO:0023052//signaling	gi|297694749|ref|XP_002824631.1|/0/PREDICTED: solute carrier family 22 member 17-like isoform 2 [Pongo abelii]
gnl|UG|Ssc#S58301121	313	90.11	199	56.88	420	126.22	"PREDICTED: Sus scrofa mortality factor 4-like protein 2-like, transcript variant 1 (LOC100524842), mRNA /cds=p(486,1352) /gb=XM_003135267 /gi=311276705 /ug=Ssc.15714 /len=2015"	-	-	-	-
gnl|UG|Ssc#S17514024	234	67.37	157	44.88	314	94.37	"BX668593 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0031.k.10 5prim, mRNA sequence /clone=scac0031.k.10 /clone_end=5' /gb=BX668593 /gi=90243712 /ug=Ssc.12229 /len=822"	-	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0019887//protein kinase regulator activity"	GO:0007126//meiosis;GO:0051726//regulation of cell cycle;GO:0019222//regulation of metabolic process;GO:0048017//inositol lipid-mediated signaling;GO:0000226//microtubule cytoskeleton organization;GO:0016310//phosphorylation	"gi|148709157|gb|EDL41103.1|/4.45334e-42/mCG1274, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S39841789	81	23.32	101	28.87	67	20.14	"rcje01_h20.y1 cje Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV936871 /gi=178553503 /ug=Ssc.25000 /len=590"	-	-	-	-
gnl|UG|Ssc#S58310847	189	54.41	150	42.88	101	30.35	"PREDICTED: Sus scrofa protein LYRIC-like (LOC100523550), mRNA /cds=p(1,1722) /gb=XM_003125550 /gi=311253581 /ug=Ssc.5731 /len=4778"	GO:0043296//apical junction complex;GO:0031224//intrinsic to membrane;GO:0005635//nuclear envelope;GO:0031090//organelle membrane;GO:0044451//nucleoplasm part;GO:0044444//cytoplasmic part	GO:0003712//transcription cofactor activity;GO:0008134//transcription factor binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0007043//cell-cell junction assembly;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0051091//positive regulation of transcription factor activity;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0006915//apoptosis;GO:0006914//autophagy;GO:0045765//regulation of angiogenesis	gi|311253582|ref|XP_003125598.1|/0/PREDICTED: protein LYRIC-like [Sus scrofa]
gnl|UG|Ssc#S42528756	5	1.44	0	0	0	0	"Sus scrofa steroid receptor coactivator 3 (SRC3) mRNA, complete cds /cds=p(128,4300) /gb=EU346674 /gi=164523397 /ug=Ssc.69931 /len=5005"	GO:0031981//nuclear lumen	GO:0003712//transcription cofactor activity;GO:0004468//lysine N-acetyltransferase activity;GO:0004871//signal transducer activity;GO:0035258//steroid hormone receptor binding;GO:0008134//transcription factor binding	GO:0006629//lipid metabolic process;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0030518//steroid hormone receptor signaling pathway	gi|166796045|ref|NP_001107748.1|/0/nuclear receptor coactivator 3 [Sus scrofa]
gnl|UG|Ssc#S35174154	143	41.17	101	28.87	49	14.73	"Sus scrofa mRNA, clone:AMP010044G02, expressed in alveolar macrophage /gb=AK230796 /gi=115545681 /ug=Ssc.79224 /len=1695"	-	-	-	-
gnl|UG|Ssc#S23695688	0	0	0	0	2	0.6	"1104193 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN106791 /gi=59782054 /ug=Ssc.84626 /len=869"	-	-	-	-
gnl|UG|Ssc#S40106980	0	0	3	0.86	0	0	"rfhi4031b_c20.y1 fhi Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW201887 /gi=182525041 /ug=Ssc.67960 /len=346"	-	-	-	-
gnl|UG|Ssc#S58311188	175	50.38	127	36.3	196	58.9	"PREDICTED: Sus scrofa son of sevenless homolog 1-like (LOC100520187), mRNA /cds=p(1,3933) /gb=XM_003125220 /gi=311252774 /ug=Ssc.25188 /len=5041"	GO:0044444//cytoplasmic part	GO:0005099//Ras GTPase activator activity;GO:0003676//nucleic acid binding;GO:0005088//Ras guanyl-nucleotide exchange factor activity	GO:0006917//induction of apoptosis;GO:0006935//chemotaxis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0002376//immune system process;GO:0009966//regulation of signal transduction;GO:0007599//hemostasis;GO:0007266//Rho protein signal transduction	gi|311252775|ref|XP_003125268.1|/0/PREDICTED: LOW QUALITY PROTEIN: son of sevenless homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S34515781	16	4.61	3	0.86	12	3.61	"DB786073 full-length enriched swine cDNA library, adult adrenal gland Sus scrofa cDNA clone ADR010051H01 5', mRNA sequence /clone=ADR010051H01 /clone_end=5' /gb=DB786073 /gi=112767005 /ug=Ssc.26856 /len=747"	GO:0000139//Golgi membrane;GO:0031224//intrinsic to membrane	GO:0015020//glucuronosyltransferase activity;GO:0043169//cation binding;GO:0008376//acetylgalactosaminyltransferase activity	-	gi|297669531|ref|XP_002812948.1|/5.09241e-124/PREDICTED: LOW QUALITY PROTEIN: chondroitin sulfate synthase 2-like [Pongo abelii]
gnl|UG|Ssc#S58309458	0	0	0	0	0	0	"PREDICTED: Sus scrofa FH1/FH2 domain-containing protein 1-like (LOC100524867), mRNA /cds=p(1,2829) /gb=XM_003126945 /gi=311257167 /ug=Ssc.2320 /len=3046"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0008092//cytoskeletal protein binding	GO:0007010//cytoskeleton organization	gi|311257168|ref|XP_003126993.1|/0/PREDICTED: FH1/FH2 domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S18379745	33	9.5	16	4.57	13	3.91	"930127 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK459898 /gi=40831179 /ug=Ssc.10853 /len=854"	-	-	-	-
gnl|UG|Ssc#S38481680	145	41.75	158	45.16	68	20.44	"EST-AO222B010 Porcine Testis from PRRSV-infected pig Sus scrofa cDNA clone AO222B010, mRNA sequence /clone=AO222B010 /gb=ES446832 /gi=146288422 /ug=Ssc.90175 /len=798"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0030286//dynein complex;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0042802//identical protein binding;GO:0030234//enzyme regulator activity	"GO:0051234//establishment of localization;GO:0007010//cytoskeleton organization;GO:0006351//transcription, DNA-dependent;GO:0007017//microtubule-based process;GO:0031327;GO:0016310//phosphorylation;GO:0044271//cellular nitrogen compound biosynthetic process;GO:0006917//induction of apoptosis;GO:0022402//cell cycle process;GO:0001505//regulation of neurotransmitter levels;GO:0007276//gamete generation;GO:0032502//developmental process"	gi|183637075|gb|ACC64544.1|/7.99596e-41/dynein light chain 1 (predicted) [Rhinolophus ferrumequinum]
gnl|UG|Ssc#S58305148	6	1.73	0	0	0	0	"PREDICTED: Sus scrofa component of oligomeric golgi complex 1 (COG1), mRNA /cds=p(28,2973) /gb=XM_003131245 /gi=311266881 /ug=Ssc.3387 /len=3333"	-	-	-	-
gnl|UG|Ssc#S55327760	18	5.18	4	1.14	28	8.41	"Sus scrofa cyclin B1 (CCNB1), mRNA /cds=p(133,1440) /gb=NM_001170768 /gi=282721139 /ug=Ssc.14243 /len=2060"	GO:0005626//insoluble fraction;GO:0005819//spindle;GO:0000778//condensed nuclear chromosome kinetochore;GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0019900//kinase binding	GO:0008284//positive regulation of cell proliferation;GO:0055013//cardiac muscle cell development;GO:0000070//mitotic sister chromatid segregation;GO:0003006//developmental process involved in reproduction;GO:0051495//positive regulation of cytoskeleton organization;GO:0043009//chordate embryonic development;GO:0010041//response to iron(III) ion;GO:0048232//male gamete generation;GO:0014070//response to organic cyclic compound;GO:0033044//regulation of chromosome organization;GO:0001666//response to hypoxia;GO:0001934//positive regulation of protein phosphorylation;GO:0051789//response to protein stimulus;GO:0009605//response to external stimulus;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0065003;GO:0070542//response to fatty acid;GO:0007093//mitotic cell cycle checkpoint;GO:0017085//response to insecticide;GO:0031124//mRNA 3'-end processing	gi|282721140|ref|NP_001164239.1|/0/G2/mitotic-specific cyclin-B1 [Sus scrofa]
gnl|UG|Ssc#S58309394	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa cyclin E1 (CCNE1), mRNA /cds=p(1,1233) /gb=XM_003127005 /gi=311257299 /ug=Ssc.18187 /len=2639"	GO:0031981//nuclear lumen;GO:0005815//microtubule organizing center;GO:0043234//protein complex	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0003712//transcription cofactor activity;GO:0035258//steroid hormone receptor binding;GO:0019887//protein kinase regulator activity;GO:0019900//kinase binding"	"GO:0007166//cell surface receptor linked signaling pathway;GO:0001541//ovarian follicle development;GO:0030518//steroid hormone receptor signaling pathway;GO:0006355//regulation of transcription, DNA-dependent;GO:0043627//response to estrogen stimulus;GO:0006259//DNA metabolic process;GO:0051384//response to glucocorticoid stimulus;GO:0014070//response to organic cyclic compound;GO:0033273//response to vitamin;GO:0045595//regulation of cell differentiation;GO:0009887//organ morphogenesis;GO:0006464//protein modification process;GO:0000082//G1/S transition of mitotic cell cycle"	gi|311257300|ref|XP_003127053.1|/0/PREDICTED: g1/S-specific cyclin-E1-like [Sus scrofa]
gnl|UG|Ssc#S58311825	0	0	0	0	0	0	"PREDICTED: Sus scrofa ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (ABCC1), mRNA /cds=p(1,3312) /gb=XM_003124577 /gi=311251462 /ug=Ssc.42683 /len=3312"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0031981//nuclear lumen	GO:0017111//nucleoside-triphosphatase activity;GO:0015405;GO:0032559	GO:0006810//transport;GO:0009058//biosynthetic process;GO:0009207;GO:0042221//response to chemical stimulus;GO:0006691//leukotriene metabolic process	gi|311251463|ref|XP_003124625.1|/0/PREDICTED: multidrug resistance-associated protein 1 [Sus scrofa]
gnl|UG|Ssc#S39837822	10	2.88	26	7.43	9	2.7	"rche21_e2.y1 che Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV933100 /gi=178516269 /ug=Ssc.62563 /len=418"	-	-	-	-
gnl|UG|Ssc#S58310799	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein-like (LOC100520557), mRNA /cds=p(1,4818) /gb=XM_003125601 /gi=311253751 /ug=Ssc.89325 /len=4917"	GO:0044464//cell part	GO:0005089//Rho guanyl-nucleotide exchange factor activity;GO:0005100//Rho GTPase activator activity;GO:0005488//binding	GO:0032321//positive regulation of Rho GTPase activity;GO:0007166//cell surface receptor linked signaling pathway	"gi|311253752|ref|XP_003125649.1|/0/PREDICTED: phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein-like [Sus scrofa]"
gnl|UG|Ssc#S48803426	7	2.02	0	0	5	1.5	"Sus scrofa CWF19-like 2 (CWF19L2) mRNA, complete cds /cds=p(12,2684) /gb=FJ236709 /gi=213688846 /ug=Ssc.24520 /len=3287"	-	-	-	gi|218664469|ref|NP_001136303.1|/0/CWF19-like protein 2 [Sus scrofa]
gnl|UG|Ssc#S55326720	7	2.02	11	3.14	12	3.61	"Sus scrofa mRNA, clone:OVRM10020C03, expressed in ovary /gb=AK347931 /gi=288778106 /ug=Ssc.82325 /len=1422"	GO:0031224//intrinsic to membrane	-	-	gi|297692833|ref|XP_002823735.1|/9.79839e-45/PREDICTED: hypothetical protein LOC100431555 [Pongo abelii]
gnl|UG|Ssc#S50163125	0	0	2	0.57	6	1.8	"susfleck_PG_N_71_F10 SUSFLECK Pituitary Gland Normalized Sus scrofa cDNA clone 71_F10, mRNA sequence /clone=71_F10 /gb=FD594961 /gi=221038096 /ug=Ssc.71525 /len=675"	GO:0005740//mitochondrial envelope	GO:0030234//enzyme regulator activity;GO:0019899//enzyme binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0006915//apoptosis;GO:0009913//epidermal cell differentiation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006605//protein targeting;GO:0008283//cell proliferation;GO:0006950//response to stress	gi|113205906|ref|NP_001038079.1|/2.00569e-17/thioredoxin-interacting protein [Sus scrofa]
gnl|UG|Ssc#S46877020	0	0	0	0	0	0	"PREDICTED: Sus scrofa cell division cycle and apoptosis regulator 1 (CCAR1), mRNA /cds=p(229,3681) /gb=XM_001928522 /gi=311271284 /ug=Ssc.52764 /len=4616"	GO:0005737//cytoplasm;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0000377	gi|194042296|ref|XP_001928557.1|/0/PREDICTED: cell division cycle and apoptosis regulator protein 1 [Sus scrofa]
gnl|UG|Ssc#S24317996	42	12.09	27	7.72	12	3.61	"Sus scrofa COL5A2 mRNA for procollagen alpha 2(V), complete cds /cds=p(110,4609) /gb=AB191304 /gi=62086217 /ug=Ssc.16328 /len=5207"	-	-	-	-
gnl|UG|Ssc#S46877434	3	0.86	0	0	4	1.2	"PREDICTED: Sus scrofa polymerase (RNA) III (DNA directed) polypeptide D, 44kDa (POLR3D), mRNA /cds=p(1,1434) /gb=XM_001927933 /gi=311270315 /ug=Ssc.54961 /len=2076"	GO:0005654//nucleoplasm	-	"GO:0031349//positive regulation of defense response;GO:0032481//positive regulation of type I interferon production;GO:0006353//transcription termination, DNA-dependent;GO:0006354//transcription elongation, DNA-dependent"	gi|311270316|ref|XP_001927968.2|/0/PREDICTED: DNA-directed RNA polymerase III subunit RPC4 [Sus scrofa]
gnl|UG|Ssc#S40060780	0	0	0	0	2	0.6	"reye1639b_j2.y1 eye Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW155687 /gi=182475777 /ug=Ssc.60817 /len=471"	-	-	-	-
gnl|UG|Ssc#S58310839	2	0.58	0	0	4	1.2	"PREDICTED: Sus scrofa epithelial splicing regulatory protein 1-like (LOC100512961), mRNA /cds=p(100,2079) /gb=XM_003125564 /gi=311253608 /ug=Ssc.8846 /len=3611"	GO:0016020//membrane;GO:0031981//nuclear lumen	GO:0003723//RNA binding	GO:0010468//regulation of gene expression;GO:0006396//RNA processing	gi|311253609|ref|XP_003125612.1|/0/PREDICTED: epithelial splicing regulatory protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55319195	7	2.02	2	0.57	5	1.5	"Sus scrofa mRNA, clone:LVRM10204D05, expressed in liver /gb=AK346497 /gi=288785689 /ug=Ssc.37664 /len=3719"	GO:0016604//nuclear body	GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|301771702|ref|XP_002921271.1|/0/PREDICTED: LOW QUALITY PROTEIN: squamous cell carcinoma antigen recognized by T-cells 3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55322650	179	51.53	110	31.44	320	96.17	"Sus scrofa mRNA, clone:DCI010046E08, expressed in dendritic cells (immature) /gb=AK344433 /gi=288782222 /ug=Ssc.2392 /len=1468"	GO:0016604//nuclear body	GO:0005488//binding	GO:0010467//gene expression	gi|73990486|ref|XP_866577.1|/2.66742e-77/PREDICTED: similar to cyclin L1 isoform 8 [Canis familiaris]
gnl|UG|Ssc#S55325370	4	1.15	2	0.57	0	0	"Sus scrofa mRNA, clone:PTG010037F10, expressed in pituitary gland /gb=AK349281 /gi=288779456 /ug=Ssc.4741 /len=2871"	GO:0000267//cell fraction;GO:0043234//protein complex;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0032559;GO:0008443//phosphofructokinase activity;GO:0043169//cation binding;GO:0070061//fructose binding;GO:0019899//enzyme binding	GO:0006007//glucose catabolic process;GO:0006000//fructose metabolic process;GO:0016310//phosphorylation;GO:0050796//regulation of insulin secretion;GO:0019725//cellular homeostasis;GO:0051260//protein homooligomerization;GO:0042593//glucose homeostasis	"gi|113205650|ref|NP_001038015.1|/0/6-phosphofructokinase, muscle type [Sus scrofa]"
gnl|UG|Ssc#S58308236	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100524941 (LOC100524941), mRNA /cds=p(25,525) /gb=XM_003128162 /gi=311259667 /ug=Ssc.94441 /len=888"	GO:0015630//microtubule cytoskeleton	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0016477//cell migration;GO:0000087//M phase of mitotic cell cycle;GO:0043623//cellular protein complex assembly;GO:0030154//cell differentiation;GO:0007017//microtubule-based process;GO:0006458//'de novo' protein folding	gi|301779015|ref|XP_002924923.1|/3.55359e-120/PREDICTED: tubulin beta-2B chain-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S20936661	2	0.58	0	0	2	0.6	"AJ648384 CSEQRAN19 Sus scrofa cDNA clone C0003264_I04, mRNA sequence /clone=C0003264_I04 /gb=AJ648384 /gi=49325229 /ug=Ssc.85561 /len=534"	GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0005515//protein binding	GO:0035556//intracellular signal transduction;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009207	"gi|149048111|gb|EDM00687.1|/8.27792e-85/Ras-like without CAAX 1 (predicted), isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S55324619	0	0	0	0	0	0	"Sus scrofa mRNA, clone:ADR010066D01, expressed in adrenal gland /gb=AK343437 /gi=288780253 /ug=Ssc.20367 /len=1133"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0004869//cysteine-type endopeptidase inhibitor activity	"GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0010466//negative regulation of peptidase activity;GO:0001822//kidney development;GO:0043066//negative regulation of apoptosis"	gi|148687916|gb|EDL19863.1|/9.35106e-37/TP53 regulated inhibitor of apoptosis 1 [Mus musculus]
gnl|UG|Ssc#S40298562	6	1.73	3	0.86	2	0.6	"rmga35_l1.y1 mga Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW393169 /gi=182807575 /ug=Ssc.56683 /len=557"	-	-	-	-
gnl|UG|Ssc#S55319257	2	0.58	3	0.86	8	2.4	"Sus scrofa mRNA, clone:LVRM10178G05, expressed in liver /gb=AK346435 /gi=288785627 /ug=Ssc.8163 /len=941"	GO:0043231//intracellular membrane-bounded organelle	GO:0042578//phosphoric ester hydrolase activity;GO:0043169//cation binding	-	gi|311243995|ref|XP_003121268.1|/2.9063e-99/PREDICTED: HD domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S39960775	3	0.86	2	0.57	6	1.8	"rpigcb_1615.y1 cty Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW055840 /gi=181328526 /ug=Ssc.90537 /len=315"	GO:0030286//dynein complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0003774//motor activity;GO:0016887//ATPase activity;GO:0032559	GO:0000278//mitotic cell cycle;GO:0022402//cell cycle process;GO:0007017//microtubule-based process;GO:0051234//establishment of localization;GO:0022618//ribonucleoprotein complex assembly	"gi|297695908|ref|XP_002825166.1|/4.01214e-53/PREDICTED: cytoplasmic dynein 1 heavy chain 1-like, partial [Pongo abelii]"
gnl|UG|Ssc#S50210731	0	0	3	0.86	3	0.9	"susfleck_AF_N_06_H11 SUSFLECK Abdominal Fat Normalized Sus scrofa cDNA clone 06_H11, mRNA sequence /clone=06_H11 /gb=FD642567 /gi=220992898 /ug=Ssc.54139 /len=841"	GO:0005865//striated muscle thin filament	GO:0046872//metal ion binding;GO:0008092//cytoskeletal protein binding	GO:0006941//striated muscle contraction	gi|152968478|gb|ABS50254.1|/4.59354e-74/fast skeletal muscle troponin C [Sus scrofa]
gnl|UG|Ssc#S58311979	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa CAP-GLY domain containing linker protein 2 (CLIP2), mRNA /cds=p(1,2871) /gb=XM_003124424 /gi=311251148 /ug=Ssc.95806 /len=2871"	GO:0043005//neuron projection;GO:0005874//microtubule;GO:0030141//stored secretory granule	GO:0008017//microtubule binding	GO:0007019//microtubule depolymerization	gi|311251149|ref|XP_003124472.1|/0/PREDICTED: CAP-Gly domain-containing linker protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58306129	4	1.15	0	0	11	3.31	"PREDICTED: Sus scrofa laminin, beta 1 (LAMB1), mRNA /cds=p(109,5364) /gb=XM_003130269 /gi=311264747 /ug=Ssc.24580 /len=5536"	GO:0043256//laminin complex;GO:0044444//cytoplasmic part	GO:0005198//structural molecule activity	GO:0016477//cell migration;GO:0030030//cell projection organization;GO:0006935//chemotaxis;GO:0009887//organ morphogenesis;GO:0008284//positive regulation of cell proliferation;GO:0000904//cell morphogenesis involved in differentiation	gi|311264748|ref|XP_003130317.1|/0/PREDICTED: laminin subunit beta-1 [Sus scrofa]
gnl|UG|Ssc#S46878845	21	6.05	24	6.86	26	7.81	"PREDICTED: Sus scrofa pecanex-like protein 1 (LOC100154536), mRNA /cds=p(1,6939) /gb=XM_001925672 /gi=311261293 /ug=Ssc.5780 /len=8023"	GO:0031224//intrinsic to membrane	-	-	gi|311261294|ref|XP_001925707.2|/0/PREDICTED: pecanex-like protein 1 [Sus scrofa]
gnl|UG|Ssc#S31115115	0	0	5	1.43	0	0	"1534110 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY418953 /gi=87220256 /ug=Ssc.41549 /len=647"	-	-	-	-
gnl|UG|Ssc#S58306280	8	2.3	5	1.43	0	0	"PREDICTED: Sus scrofa retinoblastoma binding protein 5 (RBBP5), mRNA /cds=p(119,1738) /gb=XM_003130118 /gi=311264435 /ug=Ssc.31696 /len=1818"	GO:0035097//histone methyltransferase complex;GO:0016585//chromatin remodeling complex	GO:0018024//histone-lysine N-methyltransferase activity;GO:0043565//sequence-specific DNA binding	"GO:0034968//histone lysine methylation;GO:0048545//response to steroid hormone stimulus;GO:0033554//cellular response to stress;GO:0006351//transcription, DNA-dependent"	gi|311264436|ref|XP_003130166.1|/0/PREDICTED: retinoblastoma-binding protein 5-like [Sus scrofa]
gnl|UG|Ssc#S58312751	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa A disintegrin and metalloproteinase with thrombospondin motifs 2-like (LOC100521434), mRNA /cds=p(1,2508) /gb=XM_003123651 /gi=311249567 /ug=Ssc.80508 /len=2508"	GO:0031012//extracellular matrix	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding	GO:0008544//epidermis development;GO:0032963//collagen metabolic process;GO:0006508//proteolysis;GO:0048232//male gamete generation;GO:0030198//extracellular matrix organization;GO:0030323//respiratory tube development	gi|311249568|ref|XP_003123699.1|/0/PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 2-like [Sus scrofa]
gnl|UG|Ssc#S35164461	0	0	0	0	0	0	"Sus scrofa mRNA, clone:MLN010059D10, expressed in mesenteric lymph node /gb=AK233880 /gi=115555265 /ug=Ssc.1388 /len=861"	GO:0043231//intracellular membrane-bounded organelle	GO:0008796//bis(5'-nucleosyl)-tetraphosphatase activity;GO:0032561	GO:0012502//induction of programmed cell death;GO:0034641//cellular nitrogen compound metabolic process	gi|47523684|ref|NP_999474.1|/6.85337e-81/bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] [Sus scrofa]
gnl|UG|Ssc#S22280853	4	1.15	0	0	0	0	"CJ023583 full-length enriched swine cDNA library, adult trachea Sus scrofa cDNA clone TCH01H060015 5', mRNA sequence /clone=TCH01H060015 /clone_end=5' /gb=CJ023583 /gi=54530207 /ug=Ssc.76522 /len=788"	-	-	-	-
gnl|UG|Ssc#S40006727	3	0.86	0	0	8	2.4	"reep23c_f7.y1 eep Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW101636 /gi=181298147 /ug=Ssc.95566 /len=528"	GO:0016020//membrane	-	-	"gi|194041990|ref|XP_001927347.1|/6.13281e-96/PREDICTED: inositol 1,4,5-triphosphate receptor-interacting protein-like [Sus scrofa]"
gnl|UG|Ssc#S23213560	547	157.48	132	37.73	430	129.23	"Sus scrofa clone Clu_1080.scr.msk.p1.Contig5, mRNA sequence /gb=AY609417 /gi=52350702 /ug=Ssc.856 /len=3968"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0042598//vesicular fraction;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0043130//ubiquitin binding;GO:0032559;GO:0019902//phosphatase binding	GO:0006984//ER-nucleus signaling pathway;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0006886//intracellular protein transport;GO:0009207;GO:0051259//protein oligomerization;GO:0070841;GO:0048193//Golgi vesicle transport;GO:0006915//apoptosis;GO:0031331;GO:0032446//protein modification by small protein conjugation;GO:0006281//DNA repair	gi|73971230|ref|XP_866191.1|/0/PREDICTED: similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) isoform 12 [Canis familiaris]
gnl|UG|Ssc#S35171947	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10024E01, expressed in ovary /gb=AK234864 /gi=115547888 /ug=Ssc.196 /len=2506"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0044421//extracellular region part	GO:0005488//binding;GO:0004175//endopeptidase activity	GO:0050804//regulation of synaptic transmission;GO:0007270//nerve-nerve synaptic transmission;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0030195//negative regulation of blood coagulation;GO:0031960//response to corticosteroid stimulus;GO:0030162//regulation of proteolysis;GO:0009653//anatomical structure morphogenesis;GO:0043412;GO:0014812//muscle cell migration	gi|47522924|ref|NP_999219.1|/0/tissue-type plasminogen activator precursor [Sus scrofa]
gnl|UG|Ssc#S18335231	2	0.58	0	0	0	0	"BP462297 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRM10220H12 5', mRNA sequence /clone=OVRM10220H12 /clone_end=5' /gb=BP462297 /gi=40480230 /ug=Ssc.31948 /len=616"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005216//ion channel activity	GO:0006810//transport	gi|301779836|ref|XP_002925336.1|/8.07141e-81/PREDICTED: LOW QUALITY PROTEIN: two pore calcium channel protein 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58314454	19	5.47	6	1.72	16	4.81	"PREDICTED: Sus scrofa Krueppel-like factor 9-like (LOC100515184), mRNA /cds=p(566,1300) /gb=XM_003121948 /gi=311245889 /ug=Ssc.16104 /len=4495"	-	-	-	-
gnl|UG|Ssc#S58306708	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa integrator complex subunit 4-like (LOC100512005), mRNA /cds=p(97,2226) /gb=XM_003129692 /gi=311263565 /ug=Ssc.7869 /len=2500"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme"	GO:0005488//binding	GO:0016073	gi|311263566|ref|XP_003129740.1|/0/PREDICTED: integrator complex subunit 4-like [Sus scrofa]
gnl|UG|Ssc#S55305103	0	0	2	0.57	0	0	"FS698515 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010020A03 5', mRNA sequence /clone=PST010020A03 /clone_end=5' /gb=FS698515 /gi=288307406 /ug=Ssc.29113 /len=838"	GO:0044421//extracellular region part;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0016462//pyrophosphatase activity	GO:0010038//response to metal ion	gi|73989854|ref|XP_542683.2|/5.51396e-112/PREDICTED: similar to Ectonucleoside triphosphate diphosphohydrolase 6 (NTPDase6) (CD39 antigen-like 2) [Canis familiaris]
gnl|UG|Ssc#S58314625	15	4.32	11	3.14	17	5.11	"PREDICTED: Sus scrofa trafficking protein particle complex subunit 6B-like, transcript variant 1 (LOC100525849), mRNA /cds=p(270,746) /gb=XM_003121778 /gi=311245422 /ug=Ssc.10607 /len=1868"	GO:0043231//intracellular membrane-bounded organelle	GO:0009975//cyclase activity;GO:0005506//iron ion binding	GO:0006164//purine nucleotide biosynthetic process;GO:0006810//transport	gi|148704737|gb|EDL36684.1|/9.47836e-86/trafficking protein particle complex 6B [Mus musculus]
gnl|UG|Ssc#S35173216	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVR010066A11, expressed in ovary /gb=AK234457 /gi=115546619 /ug=Ssc.22824 /len=1453"	-	GO:0016301//kinase activity;GO:0032561;GO:0032559	GO:0043412;GO:0006796//phosphate metabolic process	"gi|148676002|gb|EDL07949.1|/0/selenophosphate synthetase 1, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S35173575	39	11.23	16	4.57	47	14.12	"Sus scrofa mRNA, clone:UTR010084A05, expressed in uterus /gb=AK240498 /gi=115546260 /ug=Ssc.27573 /len=1134"	GO:0044425//membrane part;GO:0044444//cytoplasmic part;GO:0012505//endomembrane system;GO:0005886//plasma membrane	GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0006917//induction of apoptosis;GO:0007264//small GTPase mediated signal transduction;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009966//regulation of signal transduction;GO:0006897//endocytosis;GO:0007154//cell communication	gi|296491695|gb|DAA33728.1|/1.60904e-121/Intersectin 1 (SH3 domain protein)-like [Bos taurus]
gnl|UG|Ssc#S35169388	8	2.3	0	0	0	0	"Sus scrofa mRNA, clone:THY010020G04, expressed in thymus /gb=AK238716 /gi=115550451 /ug=Ssc.54425 /len=2585"	GO:0031519//PcG protein complex	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0016279//protein-lysine N-methyltransferase activity	GO:0051148//negative regulation of muscle cell differentiation;GO:0016571//histone methylation;GO:0009968//negative regulation of signal transduction;GO:0008283//cell proliferation;GO:0051320;GO:0007050//cell cycle arrest;GO:0006468//protein phosphorylation;GO:0032582//negative regulation of gene-specific transcription	gi|73978421|ref|XP_855935.1|/0/PREDICTED: similar to Enhancer of zeste homolog 2 (ENX-1) isoform 8 [Canis familiaris]
gnl|UG|Ssc#S35169112	29	8.35	6	1.72	33	9.92	"Sus scrofa mRNA, clone:OVRM10116E04, expressed in ovary /gb=AK235801 /gi=115550727 /ug=Ssc.12417 /len=2158"	GO:0031981//nuclear lumen;GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part	GO:0016615//malate dehydrogenase activity;GO:0005515//protein binding	GO:0043648//dicarboxylic acid metabolic process;GO:0009060//aerobic respiration;GO:0019674//NAD metabolic process;GO:0006006//glucose metabolic process	"gi|2506849|sp|P00346.2|MDHM_PIG/1.58792e-180/RecName: Full=Malate dehydrogenase, mitochondrial; Flags: Precursor"
gnl|UG|Ssc#S58306516	14	4.03	7	2	11	3.31	"PREDICTED: Sus scrofa zinc finger protein ZPR1-like (LOC100522090), mRNA /cds=p(1,1368) /gb=XM_003129875 /gi=311263957 /ug=Ssc.56154 /len=1842"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding	GO:0023052//signaling	gi|311263958|ref|XP_003129923.1|/0/PREDICTED: zinc finger protein ZPR1-like [Sus scrofa]
gnl|UG|Ssc#S35169670	168	48.37	46	13.15	142	42.67	"Sus scrofa mRNA, clone:OVRM10101B09, expressed in ovary /gb=AK235648 /gi=115550169 /ug=Ssc.17325 /len=1835"	-	-	-	-
gnl|UG|Ssc#S58303480	4	1.15	0	0	9	2.7	"PREDICTED: Sus scrofa aldehyde dehydrogenase, mitochondrial-like (LOC100513381), mRNA /cds=p(1,1908) /gb=XM_003132915 /gi=311270736 /ug=Ssc.85823 /len=2312"	GO:0044429//mitochondrial part	GO:0004030//aldehyde dehydrogenase [NAD(P)+] activity;GO:0005515//protein binding	GO:0044238//primary metabolic process;GO:0048545//response to steroid hormone stimulus;GO:0070542//response to fatty acid;GO:0042133//neurotransmitter metabolic process;GO:0006067//ethanol metabolic process;GO:0014070//response to organic cyclic compound;GO:0048513//organ development;GO:0002237//response to molecule of bacterial origin;GO:0006950//response to stress	"gi|311270737|ref|XP_003132963.1|/0/PREDICTED: aldehyde dehydrogenase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S46878362	68	19.58	97	27.73	91	27.35	"PREDICTED: Sus scrofa mortality factor 4 like 1, transcript variant 1 (MORF4L1), mRNA /cds=p(212,1183) /gb=XM_001927741 /gi=311260613 /ug=Ssc.80288 /len=1876"	GO:0070822//Sin3-type complex;GO:0043189//H4/H2A histone acetyltransferase complex	GO:0005515//protein binding	GO:0006476//protein deacetylation;GO:0050789//regulation of biological process;GO:0000725//recombinational repair;GO:0016573//histone acetylation	gi|194039507|ref|XP_001927776.1|/0/PREDICTED: mortality factor 4 like 1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S23213061	168	48.37	330	94.33	392	117.81	"Sus scrofa clone Clu_4682.scr.msk.p1.Contig1, mRNA sequence /gb=AY609947 /gi=52351517 /ug=Ssc.951 /len=1030"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0044431//Golgi apparatus part;GO:0032155;GO:0010008//endosome membrane	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0000149//SNARE binding	GO:0051049//regulation of transport;GO:0048168//regulation of neuronal synaptic plasticity;GO:0006886//intracellular protein transport;GO:0009207;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0035556//intracellular signal transduction	gi|194387154|dbj|BAG59943.1|/2.99639e-124/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S20116728	12	3.45	7	2	2	0.6	"Sus scrofa CD47 molecule (CD47), mRNA /cds=p(122,1033) /gb=NM_213982 /gi=47522789 /ug=Ssc.5438 /len=2759"	GO:0031988//membrane-bounded vesicle;GO:0016021//integral to membrane	GO:0005488//binding;GO:0004872//receptor activity	GO:0051707//response to other organism;GO:0016337//cell-cell adhesion;GO:0050863//regulation of T cell activation;GO:0045807//positive regulation of endocytosis;GO:0048870//cell motility;GO:0034330;GO:0031349//positive regulation of defense response;GO:0007599//hemostasis;GO:0002252;GO:0008283//cell proliferation;GO:0007166//cell surface receptor linked signaling pathway	gi|47522790|ref|NP_999147.1|/1.52747e-146/leukocyte surface antigen CD47 precursor [Sus scrofa]
gnl|UG|Ssc#S58315061	58	16.7	10	2.86	50	15.03	"PREDICTED: Sus scrofa s-adenosylmethionine decarboxylase proenzyme-like, transcript variant 1 (LOC100155925), mRNA /cds=p(622,1626) /gb=XM_003121343 /gi=311244287 /ug=Ssc.6733 /len=3690"	GO:0044444//cytoplasmic part	GO:0016831//carboxy-lyase activity	GO:0006596//polyamine biosynthetic process;GO:0043009//chordate embryonic development	gi|311244288|ref|XP_003121391.1|/0/PREDICTED: s-adenosylmethionine decarboxylase proenzyme-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55326613	114	32.82	37	10.58	113	33.96	"Sus scrofa mRNA, clone:OVRM10049C03, expressed in ovary /gb=AK348038 /gi=288778213 /ug=Ssc.32351 /len=2373"	GO:0044421//extracellular region part	GO:0019838//growth factor binding	GO:0006952//defense response;GO:0048731;GO:0016049//cell growth;GO:0044260;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0006006//glucose metabolic process;GO:0008283//cell proliferation	gi|73965971|ref|XP_850184.1|/3.70292e-161/PREDICTED: similar to Insulin-like growth factor binding protein 4 precursor (IGFBP-4) (IBP-4) (IGF-binding protein 4) [Canis familiaris]
gnl|UG|Ssc#S58312174	210	60.46	193	55.17	147	44.18	"PREDICTED: Sus scrofa 26S proteasome non-ATPase regulatory subunit 13-like (LOC100517815), mRNA /cds=p(549,1679) /gb=XM_003124227 /gi=311250749 /ug=Ssc.55246 /len=2031"	GO:0022624	GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0007126//meiosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|311250750|ref|XP_003124275.1|/0/PREDICTED: 26S proteasome non-ATPase regulatory subunit 13-like [Sus scrofa]
gnl|UG|Ssc#S58312595	27	7.77	28	8	20	6.01	"PREDICTED: Sus scrofa chromodomain helicase DNA binding protein 1 (CHD1), mRNA /cds=p(184,5304) /gb=XM_003123803 /gi=311249888 /ug=Ssc.8460 /len=6674"	GO:0043231//intracellular membrane-bounded organelle;GO:0044427	GO:0003678//DNA helicase activity;GO:0042393//histone binding;GO:0003676//nucleic acid binding;GO:0032559	"GO:0016568//chromatin modification;GO:0006355//regulation of transcription, DNA-dependent"	gi|311249889|ref|XP_003123851.1|/0/PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35165537	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:UTR010018E09, expressed in uterus /gb=AK239984 /gi=115554189 /ug=Ssc.52242 /len=1675"	GO:0044424//intracellular part	GO:0030695//GTPase regulator activity;GO:0004672//protein kinase activity;GO:0032559	GO:0000187//activation of MAPK activity	"gi|148704648|gb|EDL36595.1|/9.96027e-140/mitogen-activated protein kinase kinase kinase kinase 5, isoform CRA_c [Mus musculus]"
gnl|UG|Ssc#S23758932	0	0	2	0.57	0	0	"1116129 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN116551 /gi=59810811 /ug=Ssc.87143 /len=702"	GO:0015630//microtubule cytoskeleton	-	-	"gi|148707602|gb|EDL39549.1|/1.47586e-106/mCG130966, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S58302555	47	13.53	35	10	70	21.04	"PREDICTED: Sus scrofa triple functional domain protein-like (LOC100518698), mRNA /cds=p(315,1328) /gb=XM_003133839 /gi=311273484 /ug=Ssc.21871 /len=3221"	GO:0044444//cytoplasmic part	GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0004672//protein kinase activity;GO:0032559	GO:0006917//induction of apoptosis;GO:0006935//chemotaxis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009966//regulation of signal transduction;GO:0007266//Rho protein signal transduction;GO:0006464//protein modification process	gi|156121071|ref|NP_001095682.1|/0/triple functional domain (PTPRF interacting) [Bos taurus]
gnl|UG|Ssc#S35167444	41	11.8	15	4.29	18	5.41	"Sus scrofa mRNA, clone:AMP010015D09, expressed in alveolar macrophage /gb=AK230605 /gi=115552295 /ug=Ssc.3429 /len=2204"	GO:0031981//nuclear lumen	GO:0005488//binding	GO:0010467//gene expression;GO:0009987//cellular process	gi|301788664|ref|XP_002929751.1|/4.45639e-162/PREDICTED: cyclin-C-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58310443	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase (TRMU), mRNA /cds=p(1,1248) /gb=XM_003125965 /gi=311254916 /ug=Ssc.24651 /len=1560"	GO:0043231//intracellular membrane-bounded organelle	"GO:0008175//tRNA methyltransferase activity;GO:0046914//transition metal ion binding;GO:0016782//transferase activity, transferring sulfur-containing groups;GO:0003723//RNA binding;GO:0032559"	GO:0008033//tRNA processing	gi|311254917|ref|XP_003126013.1|/0/PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Sus scrofa]
gnl|UG|Ssc#S34497849	4	1.15	6	1.72	4	1.2	"DB814850 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10187G03 /clone_end=3' /gb=DB814850 /gi=112746755 /ug=Ssc.82692 /len=716"	-	-	-	-
gnl|UG|Ssc#S20116417	0	0	4	1.14	5	1.5	"Sus scrofa insulin-like growth factor 1 receptor (IGF1R), mRNA /cds=p(29,4132) /gb=NM_214172 /gi=47523429 /ug=Ssc.54172 /len=4236"	GO:0016021//integral to membrane;GO:0042995//cell projection;GO:0042598//vesicular fraction;GO:0044459//plasma membrane part	GO:0017046//peptide hormone binding;GO:0005102//receptor binding;GO:0005520//insulin-like growth factor binding;GO:0032559;GO:0043169//cation binding;GO:0004714//transmembrane receptor protein tyrosine kinase activity;GO:0019900//kinase binding	GO:0031016//pancreas development;GO:0006275//regulation of DNA replication;GO:0007163//establishment or maintenance of cell polarity;GO:0007417//central nervous system development;GO:0010741;GO:0048017//inositol lipid-mediated signaling;GO:0008283//cell proliferation;GO:0048732//gland development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0030030//cell projection organization;GO:0051259//protein oligomerization;GO:0002009//morphogenesis of an epithelium;GO:0006468//protein phosphorylation;GO:0033273//response to vitamin;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0002376//immune system process;GO:0045767//regulation of anti-apoptosis;GO:0016477//cell migration;GO:0000910//cytokinesis	gi|47523430|ref|NP_999337.1|/0/insulin-like growth factor 1 receptor [Sus scrofa]
gnl|UG|Ssc#S58313597	11	3.17	29	8.29	9	2.7	"PREDICTED: Sus scrofa protein-tyrosine phosphatase mitochondrial 1-like (LOC100514336), mRNA /cds=p(1,822) /gb=XM_003122819 /gi=311247854 /ug=Ssc.9174 /len=1004"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0004721//phosphoprotein phosphatase activity;GO:0034593	GO:0046838//phosphorylated carbohydrate dephosphorylation;GO:0006470//protein dephosphorylation;GO:0006650//glycerophospholipid metabolic process	gi|311247855|ref|XP_003122867.1|/2.29375e-137/PREDICTED: protein-tyrosine phosphatase mitochondrial 1-like [Sus scrofa]
gnl|UG|Ssc#S58302992	19	5.47	12	3.43	37	11.12	"PREDICTED: Sus scrofa WD repeat-containing protein 33-like (LOC100517785), mRNA /cds=p(24,3773) /gb=XM_003133405 /gi=311272451 /ug=Ssc.8172 /len=4193"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0048232//male gamete generation;GO:0006281//DNA repair	gi|311272452|ref|XP_003133453.1|/0/PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 33-like [Sus scrofa]
gnl|UG|Ssc#S23213168	23	6.62	18	5.15	18	5.41	"Sus scrofa clone Clu_34393.scr.msk.p1.Contig1, mRNA sequence /gb=AY609840 /gi=52351410 /ug=Ssc.12900 /len=1149"	GO:0044421//extracellular region part	GO:0005515//protein binding	GO:0045923//positive regulation of fatty acid metabolic process;GO:0005979//regulation of glycogen biosynthetic process;GO:0010828//positive regulation of glucose transport;GO:0000165//MAPKKK cascade	gi|73954106|ref|XP_546267.2|/5.88969e-103/PREDICTED: similar to C1q and tumor necrosis factor related protein 2 [Canis familiaris]
gnl|UG|Ssc#S58302592	25	7.2	7	2	18	5.41	"PREDICTED: Sus scrofa septin-2-like (LOC100510936), mRNA /cds=p(194,1159) /gb=XM_003133804 /gi=311273408 /ug=Ssc.9547 /len=3045"	GO:0031981//nuclear lumen;GO:0032156;GO:0016020//membrane;GO:0005624//membrane fraction;GO:0015629//actin cytoskeleton;GO:0032155;GO:0000776//kinetochore;GO:0005819//spindle;GO:0044444//cytoplasmic part	GO:0032561;GO:0005515//protein binding;GO:0017111//nucleoside-triphosphatase activity	GO:0015813//L-glutamate transport;GO:0009207;GO:0030030//cell projection organization;GO:0008104//protein localization;GO:0043623//cellular protein complex assembly;GO:0019222//regulation of metabolic process;GO:0000087//M phase of mitotic cell cycle	gi|296488739|gb|DAA30852.1|/9.26869e-177/septin-2 [Bos taurus]
gnl|UG|Ssc#S58305062	164	47.22	60	17.15	116	34.86	"PREDICTED: Sus scrofa N-myristoyltransferase 1 (NMT1), mRNA /cds=p(72,1523) /gb=XM_003131345 /gi=311267057 /ug=Ssc.20379 /len=1938"	GO:0005856//cytoskeleton;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0016410//N-acyltransferase activity	GO:0006498//N-terminal protein lipidation;GO:0006917//induction of apoptosis;GO:0043009//chordate embryonic development;GO:0018065//protein-cofactor linkage	gi|311267058|ref|XP_003131393.1|/0/PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S26722121	3	0.86	6	1.72	3	0.9	"AJ958205 KN404_2 Sus scrofa cDNA clone C0007759j21 5', mRNA sequence /clone=C0007759j21 /clone_end=5' /gb=AJ958205 /gi=74375021 /ug=Ssc.46166 /len=822"	-	-	-	-
gnl|UG|Ssc#S38753734	1229	353.84	1582	452.21	1395	419.23	"Sus scrofa B-cell translocation protein 1 mRNA, complete cds /cds=p(319,834) /gb=EF581839 /gi=148361484 /ug=Ssc.6833 /len=1806"	GO:0043231//intracellular membrane-bounded organelle	GO:0000989//transcription factor binding transcription factor activity;GO:0019899//enzyme binding	GO:0045661//regulation of myoblast differentiation;GO:0008283//cell proliferation;GO:0008213;GO:0030858//positive regulation of epithelial cell differentiation;GO:0048870//cell motility;GO:0006915//apoptosis;GO:0044093;GO:0007281//germ cell development;GO:0048232//male gamete generation;GO:0045765//regulation of angiogenesis;GO:0006950//response to stress;GO:0016049//cell growth;GO:0009725//response to hormone stimulus	gi|296212508|ref|XP_002752860.1|/7.09941e-101/PREDICTED: protein BTG1-like [Callithrix jacchus]
gnl|UG|Ssc#S55320194	83	23.9	19	5.43	21	6.31	"Sus scrofa mRNA, clone:THY010081H09, expressed in thymus /gb=AK351769 /gi=288784678 /ug=Ssc.83448 /len=2850"	-	-	-	-
gnl|UG|Ssc#S40451332	1216	350.09	905	258.69	1156	347.41	"rsag025_b19.y1 sag Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW545938 /gi=183015915 /ug=Ssc.86615 /len=391"	-	-	-	-
gnl|UG|Ssc#S46879730	12	3.45	2	0.57	32	9.62	"PREDICTED: Sus scrofa tripartite motif-containing 55, transcript variant 1 (TRIM55), mRNA /cds=p(194,1813) /gb=XM_001928826 /gi=311253772 /ug=Ssc.22520 /len=2699"	GO:0015630//microtubule cytoskeleton	GO:0060089;GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0023052//signaling	gi|194036671|ref|XP_001928861.1|/0/PREDICTED: tripartite motif-containing protein 55 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S39845209	0	0	3	0.86	0	0	"rcje33_b8.y1 cje Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV940291 /gi=178508952 /ug=Ssc.90428 /len=270"	GO:0044464//cell part	GO:0005488//binding	-	gi|149636309|ref|XP_001515657.1|/1.7747e-08/PREDICTED: similar to Ral GEF with PH domain and SH3 binding motif 2 [Ornithorhynchus anatinus]
gnl|UG|Ssc#S58301910	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa TP53-regulating kinase-like (LOC100519282), mRNA /cds=p(16,783) /gb=XM_003134484 /gi=311274996 /ug=Ssc.9314 /len=1601"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding;GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process;GO:0008610//lipid biosynthetic process;GO:0006796//phosphate metabolic process	gi|311274997|ref|XP_003134532.1|/1.23747e-123/PREDICTED: TP53-regulating kinase-like [Sus scrofa]
gnl|UG|Ssc#S50165497	0	0	0	0	2	0.6	"susfleck_PG_N_66_D09 SUSFLECK Pituitary Gland Normalized Sus scrofa cDNA clone 66_D09, mRNA sequence /clone=66_D09 /gb=FD597333 /gi=221021866 /ug=Ssc.18173 /len=690"	-	GO:0003824//catalytic activity;GO:0046914//transition metal ion binding	-	gi|311252229|ref|XP_003124989.1|/4.46972e-36/PREDICTED: e3 ubiquitin-protein ligase RNF181-like [Sus scrofa]
gnl|UG|Ssc#S18387945	3	0.86	2	0.57	4	1.2	"939423 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK468058 /gi=40839335 /ug=Ssc.62395 /len=851"	-	-	-	-
gnl|UG|Ssc#S46881154	5	1.44	0	0	8	2.4	"PREDICTED: Sus scrofa nucleoporin 188kDa (NUP188), mRNA /cds=p(14,5269) /gb=XM_001928828 /gi=311246589 /ug=Ssc.33531 /len=5684"	GO:0005635//nuclear envelope	GO:0005488//binding	GO:0050658//RNA transport;GO:0015758//glucose transport;GO:0044238//primary metabolic process	gi|194033678|ref|XP_001928863.1|/0/PREDICTED: nucleoporin NUP188 homolog [Sus scrofa]
gnl|UG|Ssc#S35168094	6	1.73	15	4.29	6	1.8	"Sus scrofa mRNA, clone:THY010060A09, expressed in thymus /gb=AK239060 /gi=115551596 /ug=Ssc.79343 /len=2944"	-	-	-	-
gnl|UG|Ssc#S35165005	563	162.09	631	180.37	371	111.5	"Sus scrofa mRNA, clone:SPL010002H07, expressed in spleen /gb=AK237132 /gi=115554721 /ug=Ssc.54867 /len=1150"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|109113007|ref|XP_001117778.1|/6.54209e-86/PREDICTED: sperm-associated antigen 7-like [Macaca mulatta]
gnl|UG|Ssc#S26726227	0	0	0	0	0	0	"AJ962311 KN404_2 Sus scrofa cDNA clone C0007759a11 3', mRNA sequence /clone=C0007759a11 /clone_end=3' /gb=AJ962311 /gi=74379127 /ug=Ssc.35523 /len=891"	-	-	-	-
gnl|UG|Ssc#S6072379	5	1.44	3	0.86	0	0	"UNL-P-FN-av-a-04-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-av-a-04-0-UNL 3', mRNA sequence /clone=UNL-P-FN-av-a-04-0-UNL /clone_end=3' /gb=BI181622 /gi=14656031 /ug=Ssc.11306 /len=758"	GO:0016020//membrane;GO:0031981//nuclear lumen	"GO:0008135//translation factor activity, nucleic acid binding"	-	gi|224066137|ref|XP_002198420.1|/3.08527e-60/PREDICTED: ankyrin repeat and BTB (POZ) domain containing 1 [Taeniopygia guttata]
gnl|UG|Ssc#S55325058	31	8.93	85	24.3	22	6.61	"Sus scrofa mRNA, clone:PTG010101G01, expressed in pituitary gland /gb=AK349550 /gi=288779814 /ug=Ssc.54666 /len=1892"	GO:0031228//intrinsic to Golgi membrane	GO:0060089;GO:0019904//protein domain specific binding	GO:0031348//negative regulation of defense response;GO:0010467//gene expression;GO:0002573//myeloid leukocyte differentiation;GO:0001818//negative regulation of cytokine production;GO:0051051//negative regulation of transport;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0016567//protein ubiquitination;GO:0045595//regulation of cell differentiation;GO:0032409;GO:0045829;GO:0009896;GO:0002828;GO:0006875//cellular metal ion homeostasis;GO:0042098//T cell proliferation	gi|114602454|ref|XP_001153016.1|/2.62866e-92/PREDICTED: similar to Nedd4 family interacting protein 1 isoform 1 [Pan troglodytes]
gnl|UG|Ssc#S20116194	26	7.49	3	0.86	43	12.92	"Sus scrofa succinate-CoA ligase, alpha subunit (SUCLG1), nuclear gene encoding mitochondrial protein, mRNA /cds=p(37,1089) /gb=NM_214409 /gi=47523875 /ug=Ssc.14502 /len=1319"	GO:0044429//mitochondrial part	"GO:0004774//succinate-CoA ligase activity;GO:0046912//transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;GO:0032561"	GO:0009060//aerobic respiration	"gi|47523876|ref|NP_999574.1|/3.17164e-143/succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S35172967	21	6.05	2	0.57	3	0.9	"Sus scrofa mRNA, clone:SPL010083H05, expressed in spleen /gb=AK237714 /gi=115546868 /ug=Ssc.24376 /len=2657"	GO:0005769//early endosome	GO:0046914//transition metal ion binding;GO:0022892	GO:0006897//endocytosis	gi|311249566|ref|XP_003123690.1|/0/PREDICTED: RUN and FYVE domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S40084728	5	1.44	2	0.57	0	0	"rfcc11b_n11.y1 fcc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW179635 /gi=182514427 /ug=Ssc.9728 /len=431"	-	-	-	gi|300872546|gb|ADK39026.1|/1.90039e-18/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S58303191	0	0	3	0.86	2	0.6	"PREDICTED: Sus scrofa leucine-rich repeat and fibronectin type III domain-containing protein 1-like (LOC100515802), mRNA /cds=p(126,2432) /gb=XM_003133209 /gi=311271946 /ug=Ssc.79547 /len=2432"	-	-	-	-
gnl|UG|Ssc#S58313543	7	2.02	10	2.86	8	2.4	"PREDICTED: Sus scrofa apoptosis inhibitor 5-like (LOC100522006), mRNA /cds=p(145,1719) /gb=XM_003122856 /gi=311247962 /ug=Ssc.4383 /len=3766"	GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0019838//growth factor binding	GO:0043066//negative regulation of apoptosis	gi|311247963|ref|XP_003122904.1|/0/PREDICTED: apoptosis inhibitor 5-like [Sus scrofa]
gnl|UG|Ssc#S26392746	8	2.3	7	2	2	0.6	"BW958096 full-length enriched swine cDNA library, adult alveolar macrophage Sus scrofa cDNA clone AMP010044C10 5', mRNA sequence /clone=AMP010044C10 /clone_end=5' /gb=BW958096 /gi=71971972 /ug=Ssc.78803 /len=698"	-	-	-	-
gnl|UG|Ssc#S58312394	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa transmembrane and coiled-coil domains 6 (TMCO6), mRNA /cds=p(57,1538) /gb=XM_003124040 /gi=311250302 /ug=Ssc.24318 /len=1844"	GO:0031224//intrinsic to membrane;GO:0005634//nucleus	-	GO:0006886//intracellular protein transport	gi|311250303|ref|XP_003124088.1|/0/PREDICTED: transmembrane and coiled-coil domain-containing protein 6-like [Sus scrofa]
gnl|UG|Ssc#S55320146	0	0	7	2	2	0.6	"Sus scrofa mRNA, clone:LVR010066E09, expressed in liver /gb=AK345944 /gi=288784726 /ug=Ssc.28006 /len=1964"	GO:0000228//nuclear chromosome	GO:0005488//binding	GO:0000086//G2/M transition of mitotic cell cycle;GO:0000080//G1 phase of mitotic cell cycle;GO:0043193//positive regulation of gene-specific transcription	gi|3184498|gb|AAC27978.1|/0/R31546_1 [Homo sapiens]
gnl|UG|Ssc#S55325756	2	0.58	2	0.57	7	2.1	"Sus scrofa mRNA, clone:PBL010056D05, expressed in peripheral blood mononuclear cells /gb=AK348895 /gi=288779070 /ug=Ssc.71802 /len=3623"	-	"GO:0008135//translation factor activity, nucleic acid binding;GO:0032561;GO:0017111//nucleoside-triphosphatase activity"	GO:0009207	gi|296475500|gb|DAA17615.1|/0/elongation factor Tu GTP binding domain containing 1 isoform 2 [Bos taurus]
gnl|UG|Ssc#S17510489	0	0	0	0	2	0.6	"BX665515 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0009.b.10 5prim, mRNA sequence /clone=scag0009.b.10 /clone_end=5' /gb=BX665515 /gi=90233926 /ug=Ssc.80606 /len=708"	-	-	-	-
gnl|UG|Ssc#S58313762	12	3.45	4	1.14	14	4.21	"PREDICTED: Sus scrofa succinate dehydrogenase assembly factor 2, mitochondrial-like (LOC100519294), mRNA /cds=p(370,870) /gb=XM_003122636 /gi=311247521 /ug=Ssc.12450 /len=1695"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0018065//protein-cofactor linkage;GO:0022904//respiratory electron transport chain	"gi|311247522|ref|XP_003122684.1|/6.65486e-91/PREDICTED: LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 2, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58306003	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa centromere protein F, 350/400kDa (mitosin) (CENPF), mRNA /cds=p(160,9372) /gb=XM_003130395 /gi=311265007 /ug=Ssc.2224 /len=10169"	GO:0034399//nuclear periphery;GO:0000777//condensed chromosome kinetochore;GO:0005819//spindle;GO:0012505//endomembrane system;GO:0044444//cytoplasmic part	GO:0042802//identical protein binding	GO:0006810//transport;GO:0042221//response to chemical stimulus;GO:0014706//striated muscle tissue development;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0051303//establishment of chromosome localization;GO:0048513//organ development;GO:0051319;GO:0043623//cellular protein complex assembly;GO:0000086//G2/M transition of mitotic cell cycle	gi|311265008|ref|XP_003130443.1|/0/PREDICTED: centromere protein F-like [Sus scrofa]
gnl|UG|Ssc#S58314925	10	2.88	2	0.57	2	0.6	"PREDICTED: Sus scrofa myosin-Ie-like (LOC100525142), mRNA /cds=p(1,1434) /gb=XM_003121480 /gi=311244652 /ug=Ssc.21780 /len=2461"	GO:0032991//macromolecular complex;GO:0015629//actin cytoskeleton	GO:0008092//cytoskeletal protein binding;GO:0003774//motor activity;GO:0016887//ATPase activity;GO:0032559	GO:0043009//chordate embryonic development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0048534;GO:0030154//cell differentiation;GO:0009791//post-embryonic development;GO:0008152//metabolic process;GO:0030029//actin filament-based process	gi|311244653|ref|XP_003121528.1|/0/PREDICTED: myosin-Ie-like [Sus scrofa]
gnl|UG|Ssc#S35173661	10	2.88	0	0	22	6.61	"Sus scrofa mRNA, clone:UTR010066A01, expressed in uterus /gb=AK240412 /gi=115546174 /ug=Ssc.2207 /len=3313"	GO:0005856//cytoskeleton	GO:0008092//cytoskeletal protein binding;GO:0005198//structural molecule activity	GO:0048513//organ development;GO:0006936//muscle contraction	gi|311270950|ref|XP_003133017.1|/0/PREDICTED: smoothelin [Sus scrofa]
gnl|UG|Ssc#S55325944	87	25.05	27	7.72	63	18.93	"Sus scrofa mRNA, clone:PBL010003B04, expressed in peripheral blood mononuclear cells /gb=AK348707 /gi=288778882 /ug=Ssc.6328 /len=1756"	GO:0030137//COPI-coated vesicle;GO:0030119//AP-type membrane coat adaptor complex;GO:0030120//vesicle coat	GO:0005488//binding	GO:0048200;GO:0015031//protein transport	gi|73954685|ref|XP_536552.2|/0/PREDICTED: similar to archain isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58314125	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa calmodulin-regulated spectrin-associated protein 1-like (LOC100518948), mRNA /cds=p(1,5841) /gb=XM_003122282 /gi=311246744 /ug=Ssc.54629 /len=5841"	-	-	-	gi|311246745|ref|XP_003122330.1|/0/PREDICTED: calmodulin-regulated spectrin-associated protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55320693	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:THY010014H01, expressed in thymus /gb=AK351469 /gi=288784179 /ug=Ssc.80416 /len=1933"	GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	"GO:0008392//arachidonic acid epoxygenase activity;GO:0016712//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen;GO:0005506//iron ion binding"	GO:0019369//arachidonic acid metabolic process;GO:0001676//long-chain fatty acid metabolic process;GO:0044057	gi|311259253|ref|XP_003128009.1|/0/PREDICTED: cytochrome P450 2J2-like [Sus scrofa]
gnl|UG|Ssc#S27602767	5	1.44	0	0	20	6.01	"EST-AR176E06 Infected Porcine Peripheral Blood Cell cDNA library Sus scrofa cDNA clone AR176E06, mRNA sequence /clone=AR176E06 /gb=DV228094 /gi=77596953 /ug=Ssc.2013 /len=743"	-	-	-	-
gnl|UG|Ssc#S20936446	8	2.3	3	0.86	11	3.31	"AJ648169 CSEQRAN19 Sus scrofa cDNA clone C0003263_N13, mRNA sequence /clone=C0003263_N13 /gb=AJ648169 /gi=49325014 /ug=Ssc.85546 /len=510"	GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0046872//metal ion binding;GO:0046983//protein dimerization activity;GO:0004197//cysteine-type endopeptidase activity	GO:0019538//protein metabolic process;GO:0008283//cell proliferation	gi|1794205|gb|AAC53002.1|/6.80317e-38/calpain small subunit [Rattus norvegicus]
gnl|UG|Ssc#S58306523	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa RNA-binding protein 7-like (LOC100522453), mRNA /cds=p(86,883) /gb=XM_003129877 /gi=311263943 /ug=Ssc.24335 /len=2041"	-	GO:0003676//nucleic acid binding	GO:0022403	gi|311263944|ref|XP_003129925.1|/8.83687e-141/PREDICTED: RNA-binding protein 7-like [Sus scrofa]
gnl|UG|Ssc#S55257784	3	0.86	0	0	2	0.6	"FS650019 full-length enriched swine cDNA library, adult back fat Sus scrofa cDNA clone BKFL10031E09 5', mRNA sequence /clone=BKFL10031E09 /clone_end=5' /gb=FS650019 /gi=288257317 /ug=Ssc.78610 /len=637"	GO:0032991//macromolecular complex;GO:0005789//endoplasmic reticulum membrane;GO:0031224//intrinsic to membrane;GO:0042598//vesicular fraction	GO:0001664//G-protein-coupled receptor binding;GO:0019829//cation-transporting ATPase activity;GO:0046872//metal ion binding;GO:0032559	GO:0008016//regulation of heart contraction;GO:0006816//calcium ion transport;GO:0006936//muscle contraction;GO:0009207;GO:0007165//signal transduction;GO:0009206;GO:0009725//response to hormone stimulus;GO:0006875//cellular metal ion homeostasis	gi|1921|emb|CAA33169.1|/5.17546e-118/unnamed protein product [Sus scrofa]
gnl|UG|Ssc#S58313708	41	11.8	10	2.86	31	9.32	"PREDICTED: Sus scrofa protein PAT1 homolog 1-like (LOC100514819), mRNA /cds=p(201,1028) /gb=XM_003122685 /gi=311247630 /ug=Ssc.19185 /len=1716"	GO:0005667//transcription factor complex;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding	"GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;GO:0022618//ribonucleoprotein complex assembly"	gi|197102902|ref|NP_001126075.1|/7.56091e-159/protein PAT1 homolog 1 [Pongo abelii]
gnl|UG|Ssc#S39766343	4	1.15	12	3.43	7	2.1	"raor037_f20.y1 aor Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV861621 /gi=178513653 /ug=Ssc.56687 /len=520"	-	-	-	-
gnl|UG|Ssc#S20935453	48	13.82	47	13.43	50	15.03	"AJ647176 CSEQRAN19 Sus scrofa cDNA clone C0003104_P04, mRNA sequence /clone=C0003104_P04 /gb=AJ647176 /gi=49324021 /ug=Ssc.74049 /len=511"	GO:0048770;GO:0043234//protein complex;GO:0031227//intrinsic to endoplasmic reticulum membrane;GO:0042598//vesicular fraction	GO:0017111//nucleoside-triphosphatase activity;GO:0043021//ribonucleoprotein binding;GO:0032559;GO:0004869//cysteine-type endopeptidase inhibitor activity;GO:0019899//enzyme binding	GO:0021577;GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0009207;GO:0016567//protein ubiquitination;GO:0009790//embryo development;GO:0021695//cerebellar cortex development;GO:0006508//proteolysis;GO:0030968//endoplasmic reticulum unfolded protein response;GO:0009267//cellular response to starvation;GO:0043066//negative regulation of apoptosis;GO:0010466//negative regulation of peptidase activity	"gi|149038951|gb|EDL93171.1|/1.45441e-64/heat shock 70kDa protein 5 (glucose-regulated protein), isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S46879064	3	0.86	0	0	6	1.8	"PREDICTED: Sus scrofa thiopurine S-methyltransferase-like (LOC100157630), mRNA /cds=p(244,981) /gb=XM_001925253 /gi=311259780 /ug=Ssc.43810 /len=1860"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0008172//S-methyltransferase activity	GO:0006790//sulfur compound metabolic process;GO:0048545//response to steroid hormone stimulus;GO:0006730//one-carbon metabolic process;GO:0006575//cellular modified amino acid metabolic process	gi|311259781|ref|XP_001925288.2|/9.98138e-144/PREDICTED: thiopurine S-methyltransferase-like [Sus scrofa]
gnl|UG|Ssc#S58312744	0	0	0	0	0	0	"PREDICTED: Sus scrofa nedd4 binding protein 3-like (LOC100511119), mRNA /cds=p(45,1676) /gb=XM_003123673 /gi=311249582 /ug=Ssc.65608 /len=1676"	GO:0044424//intracellular part	-	-	gi|311249583|ref|XP_003123721.1|/0/PREDICTED: nedd4 binding protein 3-like [Sus scrofa]
gnl|UG|Ssc#S55239133	0	0	0	0	2	0.6	"FS654123 full-length enriched swine cDNA library, adult back fat Sus scrofa cDNA clone BKFL10087E09 5', mRNA sequence /clone=BKFL10087E09 /clone_end=5' /gb=FS654123 /gi=288228564 /ug=Ssc.77537 /len=198"	-	-	-	-
gnl|UG|Ssc#S6063498	8	2.3	3	0.86	9	2.7	"MI-P-AY1-nqo-h-10-0-UI.s1 MI-P-AY1 Sus scrofa cDNA clone MI-P-AY1-nqo-h-10-0-UI 3', mRNA sequence /clone=MI-P-AY1-nqo-h-10-0-UI /clone_end=3' /gb=BI400301 /gi=15179362 /ug=Ssc.81659 /len=600"	-	-	-	-
gnl|UG|Ssc#S58302473	55	15.83	69	19.72	47	14.12	"PREDICTED: Sus scrofa polyadenylate-binding protein-interacting protein 1-like, transcript variant 1 (LOC100524591), mRNA /cds=p(22,1464) /gb=XM_003133921 /gi=311273653 /ug=Ssc.19904 /len=2727"	GO:0044444//cytoplasmic part	GO:0090079	"GO:0006412//translation;GO:0043488//regulation of mRNA stability;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|311273654|ref|XP_003133969.1|/0/PREDICTED: polyadenylate-binding protein-interacting protein 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58305295	0	0	0	0	7	2.1	"PREDICTED: Sus scrofa cullin-4A-like (LOC100517912), mRNA /cds=p(1,2286) /gb=XM_003131101 /gi=311266578 /ug=Ssc.3315 /len=3640"	-	-	-	-
gnl|UG|Ssc#S21580929	3	0.86	2	0.57	0	0	"UMC-pd0fol-008-c05 D0 ovarian follicle gilt standing estrus pd0fol Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO993902 /gi=51353176 /ug=Ssc.86683 /len=227"	-	-	-	-
gnl|UG|Ssc#S55322541	21	6.05	18	5.15	19	5.71	"Sus scrofa mRNA, clone:TCH010033E11, expressed in trachea /gb=AK350803 /gi=288782331 /ug=Ssc.4029 /len=2052"	GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	GO:0009987//cellular process	gi|194033680|ref|XP_001928957.1|/3.58249e-166/PREDICTED: endophilin-B2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S19544828	0	0	3	0.86	0	0	"950160 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN160924 /gi=46175354 /ug=Ssc.73989 /len=742"	GO:0000153//cytoplasmic ubiquitin ligase complex	GO:0016790//thiolester hydrolase activity;GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005102//receptor binding;GO:0019783//small conjugating protein-specific protease activity;GO:0032182//small conjugating protein binding	GO:0016192//vesicle-mediated transport;GO:0048870//cell motility;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0019941//modification-dependent protein catabolic process;GO:0006935//chemotaxis;GO:0016579//protein deubiquitination	gi|301773886|ref|XP_002922367.1|/9.20449e-126/PREDICTED: ubiquitin carboxyl-terminal hydrolase 33-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55255077	9	2.59	0	0	5	1.5	"FS642466 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10030F08 5', mRNA sequence /clone=BFLT10030F08 /clone_end=5' /gb=FS642466 /gi=288250280 /ug=Ssc.86959 /len=756"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0035556//intracellular signal transduction;GO:0006464//protein modification process;GO:0032501//multicellular organismal process;GO:0006796//phosphate metabolic process	gi|73973366|ref|XP_538964.2|/1.37063e-15/PREDICTED: similar to intestinal cell kinase [Canis familiaris]
gnl|UG|Ssc#S58301519	12	3.45	15	4.29	2	0.6	"PREDICTED: Sus scrofa myosin IG (MYO1G), mRNA /cds=p(1,2547) /gb=XM_003134877 /gi=311275814 /ug=Ssc.9597 /len=2547"	GO:0016020//membrane;GO:0015629//actin cytoskeleton	GO:0008092//cytoskeletal protein binding;GO:0017111//nucleoside-triphosphatase activity;GO:0032559	-	gi|311275815|ref|XP_003134925.1|/0/PREDICTED: myosin-Ig-like [Sus scrofa]
gnl|UG|Ssc#S58301510	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa synaptobrevin homolog YKT6-like (LOC100513964), mRNA /cds=p(494,1090) /gb=XM_003134882 /gi=311275832 /ug=Ssc.1537 /len=2703"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0016021//integral to membrane;GO:0044444//cytoplasmic part;GO:0012506//vesicle membrane	GO:0016409//palmitoyltransferase activity;GO:0005515//protein binding	GO:0006887//exocytosis;GO:0048193//Golgi vesicle transport;GO:0016197//endosome transport	gi|311275833|ref|XP_003134930.1|/1.19735e-95/PREDICTED: synaptobrevin homolog YKT6-like [Sus scrofa]
gnl|UG|Ssc#S35171505	211	60.75	67	19.15	151	45.38	"Sus scrofa mRNA, clone:LNG010014D07, expressed in lung /gb=AK231707 /gi=115548334 /ug=Ssc.15656 /len=1188"	-	-	-	-
gnl|UG|Ssc#S40149328	81	23.32	89	25.44	82	24.64	"rhlv08b_n16.y1 hlv Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW244235 /gi=182513424 /ug=Ssc.67728 /len=626"	-	-	-	-
gnl|UG|Ssc#S18546466	0	0	0	0	0	0	"BX915117 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0028.a.08 5prim, mRNA sequence /clone=scan0028.a.08 /clone_end=5' /gb=BX915117 /gi=90242305 /ug=Ssc.49974 /len=833"	GO:0044424//intracellular part	GO:0005488//binding	-	gi|118403832|ref|NP_001072144.1|/1.1874e-90/C1q-related factor [Sus scrofa]
gnl|UG|Ssc#S58305821	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa serine/threonine-protein phosphatase 6 catalytic subunit-like (LOC100518271), mRNA /cds=p(1,534) /gb=XM_003130577 /gi=311265376 /ug=Ssc.95489 /len=1644"	GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0004721//phosphoprotein phosphatase activity	GO:0006464//protein modification process;GO:0006796//phosphate metabolic process;GO:0022402//cell cycle process	gi|4506029|ref|NP_002712.1|/2.81436e-179/serine/threonine-protein phosphatase 6 catalytic subunit isoform b [Homo sapiens]
gnl|UG|Ssc#S58306803	189	54.41	68	19.44	75	22.54	"PREDICTED: Sus scrofa ribonucleotide reductase M1, transcript variant 2 (RRM1), mRNA /cds=p(221,2602) /gb=XM_003129614 /gi=311263374 /ug=Ssc.6710 /len=3041"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0016728;GO:0032559	GO:0006259//DNA metabolic process;GO:0009165//nucleotide biosynthetic process;GO:0051262//protein tetramerization	gi|311263375|ref|XP_003129662.1|/0/PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35172223	117	33.68	122	34.87	160	48.08	"Sus scrofa mRNA, clone:ITT010027D06, expressed in intestine /gb=AK231270 /gi=115547612 /ug=Ssc.54041 /len=1299"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	GO:0016787//hydrolase activity	GO:0051605//protein maturation by peptide bond cleavage;GO:0030073//insulin secretion;GO:0015980//energy derivation by oxidation of organic compounds	gi|11345462|ref|NP_068747.1|/4.70097e-99/signal peptidase complex subunit 3 [Homo sapiens]
gnl|UG|Ssc#S6076296	252	72.55	60	17.15	155	46.58	"UNL-P-FN-ci-f-12-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-ci-f-12-0-UNL 3', mRNA sequence /clone=UNL-P-FN-ci-f-12-0-UNL /clone_end=3' /gb=BI184148 /gi=14658557 /ug=Ssc.369 /len=733"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0004672//protein kinase activity;GO:0019888//protein phosphatase regulator activity;GO:0032559;GO:0019212//phosphatase inhibitor activity	GO:0019222//regulation of metabolic process;GO:0006464//protein modification process;GO:0016310//phosphorylation	"gi|301762658|ref|XP_002916761.1|/1.23877e-50/PREDICTED: protein phosphatase 1 regulatory subunit 14B-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S35174118	3	0.86	3	0.86	0	0	"Sus scrofa mRNA, clone:AMP010050C04, expressed in alveolar macrophage /gb=AK230832 /gi=115545717 /ug=Ssc.10333 /len=2575"	GO:0031981//nuclear lumen;GO:0012505//endomembrane system;GO:0044431//Golgi apparatus part	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006996//organelle organization;GO:0016049//cell growth;GO:0006355//regulation of transcription, DNA-dependent;GO:0006886//intracellular protein transport"	gi|296479231|gb|DAA21346.1|/0/basic leucine zipper nuclear factor 1 [Bos taurus]
gnl|UG|Ssc#S35168326	4	1.15	0	0	4	1.2	"Sus scrofa mRNA, clone:OVRM10147F11, expressed in ovary /gb=AK236042 /gi=115551364 /ug=Ssc.31457 /len=2780"	GO:0043231//intracellular membrane-bounded organelle	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0006310//DNA recombination;GO:0033554//cellular response to stress;GO:0009207	gi|73966986|ref|XP_548263.2|/2.82174e-132/PREDICTED: similar to DNA repair protein RAD51 homolog 4 (R51H3) (TRAD) [Canis familiaris]
gnl|UG|Ssc#S55320015	39	11.23	70	20.01	36	10.82	"Sus scrofa mRNA, clone:LVRM10035B06, expressed in liver /gb=AK346075 /gi=288784861 /ug=Ssc.39027 /len=1333"	-	-	-	-
gnl|UG|Ssc#S46876641	0	0	4	1.14	4	1.2	"PREDICTED: Sus scrofa signal peptide peptidase-like 3-like (LOC100154995), mRNA /cds=p(178,1332) /gb=XM_001928829 /gi=311270756 /ug=Ssc.21432 /len=2487"	GO:0031224//intrinsic to membrane	GO:0004175//endopeptidase activity	GO:0042981//regulation of apoptosis	gi|311270757|ref|XP_001928864.2|/0/PREDICTED: signal peptide peptidase-like 3-like [Sus scrofa]
gnl|UG|Ssc#S58310067	25	7.2	25	7.15	22	6.61	"PREDICTED: Sus scrofa protein OS-9-like (LOC100521897), mRNA /cds=p(1,1497) /gb=XM_003126334 /gi=311255815 /ug=Ssc.857 /len=1929"	GO:0000835	GO:0005515//protein binding;GO:0030246//carbohydrate binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0035437//maintenance of protein localization in endoplasmic reticulum;GO:0033554//cellular response to stress;GO:0016567//protein ubiquitination	gi|311255816|ref|XP_003126382.1|/0/PREDICTED: protein OS-9-like [Sus scrofa]
gnl|UG|Ssc#S43134849	6	1.73	0	0	6	1.8	"Sus scrofa pigBLM mRNA for Bloom syndrome protein, complete cds /cds=p(8,4288) /gb=AB355635 /gi=168084099 /ug=Ssc.71006 /len=4316"	GO:0034399//nuclear periphery;GO:0043073//germ cell nucleus;GO:0016604//nuclear body;GO:0000795//synaptonemal complex	GO:0004003//ATP-dependent DNA helicase activity;GO:0003690//double-stranded DNA binding;GO:0032559;GO:0005515//protein binding;GO:0000217//DNA secondary structure binding	GO:0006461//protein complex assembly;GO:0000019//regulation of mitotic recombination;GO:0006996//organelle organization;GO:0009207;GO:0030217//T cell differentiation;GO:0051319;GO:0065009;GO:0010212//response to ionizing radiation;GO:0045005//maintenance of fidelity involved in DNA-dependent DNA replication;GO:0000077//DNA damage checkpoint;GO:0000725//recombinational repair;GO:0042102//positive regulation of T cell proliferation	gi|178056740|ref|NP_001116556.1|/0/Bloom syndrome protein [Sus scrofa]
gnl|UG|Ssc#S58304590	5	1.44	4	1.14	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100522275 (LOC100522275), mRNA /cds=p(1,1806) /gb=XM_003131808 /gi=311268030 /ug=Ssc.82944 /len=1806"	GO:0016020//membrane;GO:0044444//cytoplasmic part	GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0005100//Rho GTPase activator activity;GO:0005488//binding	GO:0031348//negative regulation of defense response;GO:0007010//cytoskeleton organization;GO:0007417//central nervous system development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0002695;GO:0006917//induction of apoptosis;GO:0042471//ear morphogenesis;GO:0045807//positive regulation of endocytosis;GO:0002237//response to molecule of bacterial origin;GO:0032321//positive regulation of Rho GTPase activity;GO:0016477//cell migration;GO:0050905//neuromuscular process	gi|311268031|ref|XP_003131856.1|/0/PREDICTED: hypothetical protein LOC100522275 [Sus scrofa]
gnl|UG|Ssc#S58309637	2	0.58	4	1.14	3	0.9	"PREDICTED: Sus scrofa dual specificity tyrosine-phosphorylation-regulated kinase 2-like (LOC100515779), mRNA /cds=p(374,2179) /gb=XM_003126761 /gi=311256793 /ug=Ssc.9505 /len=2718"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0004672//protein kinase activity;GO:0032559	"GO:0008630//DNA damage response, signal transduction resulting in induction of apoptosis;GO:0006468//protein phosphorylation;GO:0005979//regulation of glycogen biosynthetic process"	gi|311256794|ref|XP_003126809.1|/0/PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 2-like [Sus scrofa]
gnl|UG|Ssc#S35166302	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10210F01, expressed in ovary /gb=AK236639 /gi=115553436 /ug=Ssc.22801 /len=3613"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|297462308|ref|XP_599680.5|/0/PREDICTED: breast carcinoma amplified sequence 3 [Bos taurus]
gnl|UG|Ssc#S6055104	153	44.05	120	34.3	94	28.25	"MI-P-E4-ahd-h-04-1-UM.s1 MI-P-E4 Sus scrofa cDNA clone MI-P-E4-ahd-h-04-1-UM 3', mRNA sequence /clone=MI-P-E4-ahd-h-04-1-UM /clone_end=3' /gb=BQ598826 /gi=21545552 /ug=Ssc.60330 /len=628"	"GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0033177//proton-transporting two-sector ATPase complex, proton-transporting domain;GO:0019866//organelle inner membrane"	GO:0015078//hydrogen ion transmembrane transporter activity	"GO:0006754//ATP biosynthetic process;GO:0015988//energy coupled proton transport, against electrochemical gradient"	gi|114688233|ref|XP_001139215.1|/4.73196e-15/PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
gnl|UG|Ssc#S40100658	0	0	2	0.57	0	0	"rpfco0139_l2.y1 fco Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW195565 /gi=182477635 /ug=Ssc.64867 /len=451"	-	-	-	-
gnl|UG|Ssc#S21581516	44	12.67	34	9.72	19	5.71	"UMC-pd12_14end-002-h01 Endometrium pregnant gilt day 12 & 14 pd12_14end Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO994394 /gi=51353668 /ug=Ssc.86694 /len=327"	"GO:0043231//intracellular membrane-bounded organelle;GO:0033177//proton-transporting two-sector ATPase complex, proton-transporting domain"	GO:0015078//hydrogen ion transmembrane transporter activity	GO:0034220//ion transmembrane transport;GO:0015992//proton transport	gi|114688233|ref|XP_001139215.1|/1.68308e-22/PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
gnl|UG|Ssc#S58310682	20	5.76	4	1.14	30	9.02	"PREDICTED: Sus scrofa protein FAM189B-like (LOC100511014), mRNA /cds=p(1,1998) /gb=XM_003125717 /gi=311254172 /ug=Ssc.49156 /len=2560"	GO:0031224//intrinsic to membrane	GO:0019904//protein domain specific binding	-	gi|311254173|ref|XP_003125765.1|/0/PREDICTED: LOW QUALITY PROTEIN: protein FAM189B-like [Sus scrofa]
gnl|UG|Ssc#S23698069	8	2.3	66	18.87	59	17.73	"1106739 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN109172 /gi=59785924 /ug=Ssc.26237 /len=831"	GO:0016020//membrane;GO:0031012//extracellular matrix	GO:0005102//receptor binding;GO:0060089	GO:0032583//regulation of gene-specific transcription;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0007267//cell-cell signaling;GO:0043010//camera-type eye development;GO:0014706//striated muscle tissue development;GO:0032526//response to retinoic acid;GO:0042476//odontogenesis;GO:0043392//negative regulation of DNA binding;GO:0003002//regionalization;GO:0070169;GO:0003143//embryonic heart tube morphogenesis;GO:0035567//non-canonical Wnt receptor signaling pathway;GO:0048754//branching morphogenesis of a tube;GO:0030154//cell differentiation;GO:0048565//digestive tract development;GO:0061326;GO:0001838//embryonic epithelial tube formation	"gi|291392251|ref|XP_002712638.1|/2.18859e-145/PREDICTED: wingless-type MMTV integration site family, member 6 [Oryctolagus cuniculus]"
gnl|UG|Ssc#S58304277	3	0.86	2	0.57	7	2.1	"PREDICTED: Sus scrofa golgi reassembly stacking protein 1, 65kDa (GORASP1), mRNA /cds=p(73,1419) /gb=XM_003132121 /gi=311268694 /ug=Ssc.1261 /len=1446"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	-	GO:0007067//mitosis;GO:0006810//transport	gi|311268695|ref|XP_003132169.1|/0/PREDICTED: Golgi reassembly-stacking protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55323745	26	7.49	19	5.43	53	15.93	"Sus scrofa mRNA, clone:SPL010023H04, expressed in spleen /gb=AK350266 /gi=288781127 /ug=Ssc.9766 /len=2025"	GO:0019866//organelle inner membrane;GO:0005740//mitochondrial envelope	"GO:0019205//nucleobase, nucleoside, nucleotide kinase activity;GO:0016776//phosphotransferase activity, phosphate group as acceptor;GO:0032559"	GO:0006144//purine base metabolic process;GO:0009117//nucleotide metabolic process;GO:0006796//phosphate metabolic process	"gi|125154|sp|P08166.2|KAD2_BOVIN/4.9833e-128/RecName: Full=Adenylate kinase 2, mitochondrial; Short=AK 2; AltName: Full=ATP-AMP transphosphorylase 2"
gnl|UG|Ssc#S58302803	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa bone morphogenetic protein receptor, type II (serine/threonine kinase) (BMPR2), mRNA /cds=p(1,3147) /gb=XM_003133596 /gi=311272911 /ug=Ssc.33016 /len=3753"	GO:0016021//integral to membrane;GO:0044459//plasma membrane part	GO:0005515//protein binding;GO:0004675//transmembrane receptor protein serine/threonine kinase activity;GO:0032559;GO:0043169//cation binding	"GO:0001934//positive regulation of protein phosphorylation;GO:0006351//transcription, DNA-dependent;GO:0010594//regulation of endothelial cell migration;GO:0010631//epithelial cell migration;GO:0045597//positive regulation of cell differentiation;GO:0001935//endothelial cell proliferation;GO:0003073;GO:0019229//regulation of vasoconstriction;GO:0031669//cellular response to nutrient levels;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0003002//regionalization;GO:0030282//bone mineralization;GO:0016049//cell growth;GO:0030509//BMP signaling pathway;GO:0001704//formation of primary germ layer"	gi|311272912|ref|XP_003133644.1|/0/PREDICTED: bone morphogenetic protein receptor type-2 [Sus scrofa]
gnl|UG|Ssc#S35169623	0	0	5	1.43	2	0.6	"Sus scrofa mRNA, clone:OVRM10105F04, expressed in ovary /gb=AK235695 /gi=115550216 /ug=Ssc.44196 /len=1983"	-	-	-	gi|297262059|ref|XP_001083350.2|/3.60118e-115/PREDICTED: protein FAM60A isoform 3 [Macaca mulatta]
gnl|UG|Ssc#S40313895	3	0.86	7	2	9	2.7	"rmgp029_m5.y1 mgp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW408502 /gi=182768000 /ug=Ssc.67793 /len=584"	-	-	-	-
gnl|UG|Ssc#S55319342	3	0.86	4	1.14	0	0	"Sus scrofa mRNA, clone:LVRM10149A02, expressed in liver /gb=AK346350 /gi=288785542 /ug=Ssc.13120 /len=1663"	-	-	-	gi|296476004|gb|DAA18119.1|/4.54747e-177/threonine aldolase 1-like [Bos taurus]
gnl|UG|Ssc#S58304013	46	13.24	60	17.15	23	6.91	"PREDICTED: Sus scrofa intraflagellar transport 122 homolog (Chlamydomonas) (IFT122), mRNA /cds=p(1,3396) /gb=XM_003132384 /gi=311269309 /ug=Ssc.1905 /len=3760"	GO:0005815//microtubule organizing center;GO:0031513//nonmotile primary cilium	-	GO:0014020;GO:0048858//cell projection morphogenesis;GO:0048736;GO:0048592//eye morphogenesis;GO:0010171//body morphogenesis	gi|311269310|ref|XP_003132432.1|/0/PREDICTED: intraflagellar transport protein 122 homolog [Sus scrofa]
gnl|UG|Ssc#S58301878	0	0	3	0.86	4	1.2	"PREDICTED: Sus scrofa ubiquitin protein ligase E3C (UBE3C), mRNA /cds=p(1,1317) /gb=XM_003134518 /gi=311275080 /ug=Ssc.28152 /len=1317"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination	gi|311275081|ref|XP_003134566.1|/0/PREDICTED: ubiquitin-protein ligase E3C-like [Sus scrofa]
gnl|UG|Ssc#S35166630	23	6.62	12	3.43	10	3.01	"Sus scrofa mRNA, clone:THY010124D05, expressed in thymus /gb=AK239695 /gi=115553109 /ug=Ssc.11790 /len=1479"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0008289//lipid binding;GO:0005548//phospholipid transporter activity	GO:0044238//primary metabolic process;GO:0050953//sensory perception of light stimulus;GO:0006935//chemotaxis;GO:0006869//lipid transport	gi|74219964|dbj|BAE40562.1|/4.81442e-151/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S58308397	19	5.47	7	2	8	2.4	"PREDICTED: Sus scrofa oxysterol binding protein-like 9 (OSBPL9), mRNA /cds=p(1,2430) /gb=XM_003127992 /gi=311259335 /ug=Ssc.39050 /len=3142"	-	GO:0005488//binding	GO:0051234//establishment of localization;GO:0010876	gi|311259336|ref|XP_003128040.1|/0/PREDICTED: oxysterol-binding protein-related protein 9-like [Sus scrofa]
gnl|UG|Ssc#S55321626	124	35.7	475	135.78	96	28.85	"Sus scrofa mRNA, clone:ITT010049B01, expressed in small intestine /gb=AK345061 /gi=288783246 /ug=Ssc.16650 /len=2115"	-	-	-	-
gnl|UG|Ssc#S58312928	13	3.74	4	1.14	7	2.1	"PREDICTED: Sus scrofa AP-1 complex subunit mu-1-like, transcript variant 1 (LOC100511918), mRNA /cds=p(179,1450) /gb=XM_003123471 /gi=311249206 /ug=Ssc.54677 /len=2293"	GO:0005764//lysosome;GO:0030136//clathrin-coated vesicle;GO:0030119//AP-type membrane coat adaptor complex;GO:0012506//vesicle membrane;GO:0044431//Golgi apparatus part	GO:0005488//binding	GO:0048753//pigment granule organization;GO:0048193//Golgi vesicle transport;GO:0050688//regulation of defense response to virus;GO:0015031//protein transport	gi|14210504|ref|NP_115882.1|/0/AP-1 complex subunit mu-1 isoform 2 [Homo sapiens]
gnl|UG|Ssc#S35173713	61	17.56	23	6.57	17	5.11	"Sus scrofa mRNA, clone:UTR010059D03, expressed in uterus /gb=AK240364 /gi=115546122 /ug=Ssc.55452 /len=3081"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0017048//Rho GTPase binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0034613//cellular protein localization;GO:0048519;GO:0065008;GO:0051223//regulation of protein transport;GO:0010468//regulation of gene expression;GO:0030036//actin cytoskeleton organization;GO:0044092//negative regulation of molecular function;GO:0048522;GO:0046907//intracellular transport;GO:0071844;GO:0019219;GO:0035556//intracellular signal transduction;GO:0031326	"gi|301792641|ref|XP_002931287.1|/0/PREDICTED: filamin-A-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58309997	45	12.96	21	6	64	19.23	"PREDICTED: Sus scrofa endoplasmic reticulum-Golgi intermediate compartment protein 2-like (LOC100512051), mRNA /cds=p(128,1261) /gb=XM_003126402 /gi=311255981 /ug=Ssc.7447 /len=2136"	GO:0031224//intrinsic to membrane;GO:0005793//ER-Golgi intermediate compartment;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0006810//transport	gi|311255982|ref|XP_003126450.1|/0/PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 2-like [Sus scrofa]
gnl|UG|Ssc#S43509695	29	8.35	114	32.59	37	11.12	"Sus scrofa ring finger protein 5 (RNF5), mRNA /cds=p(221,763) /gb=NM_001123224 /gi=178056545 /ug=Ssc.1246 /len=1252"	GO:0031224//intrinsic to membrane;GO:0031090//organelle membrane;GO:0005740//mitochondrial envelope	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0000209//protein polyubiquitination;GO:0006515//misfolded or incompletely synthesized protein catabolic process	gi|149732078|ref|XP_001493502.1|/2.00729e-83/PREDICTED: similar to ring finger protein 5 [Equus caballus]
gnl|UG|Ssc#S58309307	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa zinc finger protein 568 (ZNF568), mRNA /cds=p(694,3222) /gb=XM_003127092 /gi=311257474 /ug=Ssc.10654 /len=3222"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|311257475|ref|XP_003127140.1|/0/PREDICTED: zinc finger protein 568-like [Sus scrofa]
gnl|UG|Ssc#S46876552	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa LIM domain kinase 2, transcript variant 1 (LIMK2), mRNA /cds=p(332,2185) /gb=XM_001926065 /gi=311270967 /ug=Ssc.54350 /len=3771"	GO:0000267//cell fraction;GO:0044431//Golgi apparatus part	GO:0004672//protein kinase activity;GO:0046914//transition metal ion binding;GO:0046983//protein dimerization activity;GO:0032559	GO:0006796//phosphate metabolic process;GO:0048232//male gamete generation;GO:0007281//germ cell development;GO:0006464//protein modification process	gi|194043266|ref|XP_001926100.1|/0/PREDICTED: LIM domain kinase 2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S20116585	2	0.58	5	1.43	3	0.9	"Sus scrofa protein kinase A anchoring protein (D-AKAP2), mRNA /cds=p(32,1954) /gb=NM_214138 /gi=47523075 /ug=Ssc.57557 /len=1954"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	"GO:0060089;GO:0005515//protein binding;GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0007599//hemostasis;GO:0033036;GO:0023052//signaling	"gi|13626099|sp|P57770.2|AKA10_PIG/0/RecName: Full=A-kinase anchor protein 10, mitochondrial; Short=AKAP-10; AltName: Full=Dual specificity A kinase-anchoring protein 2; Short=D-AKAP-2; AltName: Full=Protein kinase A-anchoring protein 10; Short=PRKA10; Flags: Precursor"
gnl|UG|Ssc#S23213132	44	12.67	82	23.44	37	11.12	"Sus scrofa clone Clu_37366.scr.msk.p1.Contig1, mRNA sequence /gb=AY609876 /gi=52351446 /ug=Ssc.21182 /len=729"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0005515//protein binding	GO:0051084//'de novo' posttranslational protein folding;GO:0043623//cellular protein complex assembly	gi|297661291|ref|XP_002809199.1|/5.29458e-46/PREDICTED: prefoldin subunit 6-like [Pongo abelii]
gnl|UG|Ssc#S21560615	220	63.34	94	26.87	223	67.02	"UMC-p8mm4-018-e08 8mm ovarian follicle p8mm Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO949518 /gi=51326464 /ug=Ssc.86499 /len=374"	-	-	-	-
gnl|UG|Ssc#S46877642	37	10.65	11	3.14	18	5.41	"PREDICTED: Sus scrofa DnaJ (Hsp40) homolog, subfamily B, member 11 (DNAJB11), mRNA /cds=p(197,1273) /gb=XM_001926441 /gi=311269751 /ug=Ssc.22038 /len=1665"	GO:0044432//endoplasmic reticulum part	GO:0005515//protein binding	GO:0044267//cellular protein metabolic process;GO:0009451//RNA modification	gi|194041008|ref|XP_001926476.1|/0/PREDICTED: dnaJ homolog subfamily B member 11 [Sus scrofa]
gnl|UG|Ssc#S26719574	0	0	0	0	2	0.6	"AJ955658 KN404_1 Sus scrofa cDNA clone C0007738a07 5', mRNA sequence /clone=C0007738a07 /clone_end=5' /gb=AJ955658 /gi=74372474 /ug=Ssc.87702 /len=674"	GO:0044464//cell part	GO:0005099//Ras GTPase activator activity;GO:0005488//binding	GO:0032318//regulation of Ras GTPase activity	"gi|291399683|ref|XP_002716242.1|/7.98564e-99/PREDICTED: TBC1 domain family, member 5 isoform 2 [Oryctolagus cuniculus]"
gnl|UG|Ssc#S46878760	0	0	0	0	0	0	"PREDICTED: Sus scrofa stimulated by retinoic acid gene 6 protein homolog, transcript variant 1 (LOC100153335), mRNA /cds=p(257,2257) /gb=XM_001928148 /gi=311260810 /ug=Ssc.28836 /len=2954"	GO:0016020//membrane;GO:0032991//macromolecular complex	-	-	gi|194038686|ref|XP_001928183.1|/0/PREDICTED: stimulated by retinoic acid gene 6 protein homolog isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58311219	5	1.44	4	1.14	5	1.5	"PREDICTED: Sus scrofa leucine-rich PPR motif-containing protein, mitochondrial-like (LOC100512047), partial mRNA /cds=p(43,2341) /gb=XM_003125182 /gi=311252710 /ug=Ssc.41224 /len=2341"	GO:0000228//nuclear chromosome;GO:0031965//nuclear membrane;GO:0019866//organelle inner membrane;GO:0005759//mitochondrial matrix	GO:0003779//actin binding;GO:0015631//tubulin binding;GO:0043566//structure-specific DNA binding	"GO:0050658//RNA transport;GO:0034643//establishment of mitochondrion localization, microtubule-mediated;GO:0006351//transcription, DNA-dependent"	"gi|311252711|ref|XP_003125230.1|/0/PREDICTED: leucine-rich PPR motif-containing protein, mitochondrial-like, partial [Sus scrofa]"
gnl|UG|Ssc#S46877987	268	77.16	298	85.18	273	82.04	"PREDICTED: Sus scrofa dystonin, transcript variant 1 (DST), mRNA /cds=p(1,16482) /gb=XM_001927053 /gi=311260222 /ug=Ssc.21895 /len=17535"	GO:0043231//intracellular membrane-bounded organelle;GO:0009925//basal plasma membrane;GO:0005874//microtubule;GO:0031410//cytoplasmic vesicle;GO:0005578//proteinaceous extracellular matrix	GO:0008017//microtubule binding;GO:0046872//metal ion binding;GO:0005102//receptor binding	GO:0022402//cell cycle process;GO:0007010//cytoskeleton organization;GO:0007166//cell surface receptor linked signaling pathway	gi|311260223|ref|XP_001927088.2|/0/PREDICTED: bullous pemphigoid antigen 1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35173422	0	0	16	4.57	0	0	"Sus scrofa mRNA, clone:AMP010066C10, expressed in alveolar macrophage /gb=AK230932 /gi=115546413 /ug=Ssc.44934 /len=1986"	GO:0044464//cell part	GO:0005099//Ras GTPase activator activity	GO:0032318//regulation of Ras GTPase activity	"gi|296491544|gb|DAA33587.1|/0/TBC1 domain family, member 23 [Bos taurus]"
gnl|UG|Ssc#S58301976	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa transcription factor TZP (TZP), mRNA /cds=p(1,2091) /gb=XM_003134421 /gi=311274786 /ug=Ssc.27893 /len=2091"	GO:0035097//histone methyltransferase complex	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311274787|ref|XP_003134469.1|/0/PREDICTED: PHD finger protein 20 [Sus scrofa]
gnl|UG|Ssc#S58311085	0	0	2	0.57	3	0.9	"PREDICTED: Sus scrofa histone H3-like centromeric protein A-like (LOC100513079), mRNA /cds=p(1,417) /gb=XM_003125324 /gi=311252981 /ug=Ssc.45115 /len=2023"	GO:0000794//condensed nuclear chromosome;GO:0044444//cytoplasmic part;GO:0000777//condensed chromosome kinetochore	GO:0005488//binding	GO:0040001//establishment of mitotic spindle localization;GO:0034502//protein localization to chromosome;GO:0043623//cellular protein complex assembly;GO:0007067//mitosis;GO:0043486//histone exchange	gi|311252982|ref|XP_003125372.1|/2.99142e-40/PREDICTED: histone H3-like centromeric protein A-like [Sus scrofa]
gnl|UG|Ssc#S58306079	0	0	0	0	0	0	"PREDICTED: Sus scrofa rab GTPase-activating protein 1-like (LOC100519968), mRNA /cds=p(171,2003) /gb=XM_003130324 /gi=311264850 /ug=Ssc.79341 /len=2003"	-	-	-	-
gnl|UG|Ssc#S58313642	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa protein yippee-like 4-like (LOC100520717), mRNA /cds=p(415,798) /gb=XM_003122717 /gi=311247763 /ug=Ssc.49739 /len=1983"	GO:0031981//nuclear lumen	-	-	gi|21450727|ref|NP_659445.1|/5.82754e-73/protein yippee-like 4 [Homo sapiens]
gnl|UG|Ssc#S35171510	12	3.45	9	2.57	12	3.61	"Sus scrofa mRNA, clone:LNG010014B06, expressed in lung /gb=AK231702 /gi=115548329 /ug=Ssc.30790 /len=1938"	-	-	-	-
gnl|UG|Ssc#S55325197	11	3.17	26	7.43	14	4.21	"Sus scrofa mRNA, clone:ADR010014D06, expressed in adrenal gland /gb=AK343260 /gi=288779675 /ug=Ssc.15587 /len=2085"	-	-	-	-
gnl|UG|Ssc#S19549000	9	2.59	17	4.86	15	4.51	"995512 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN165112 /gi=46179542 /ug=Ssc.12650 /len=864"	-	-	-	-
gnl|UG|Ssc#S55324666	17	4.89	2	0.57	21	6.31	"Sus scrofa mRNA, clone:ADR010055E09, expressed in adrenal gland /gb=AK343390 /gi=288780206 /ug=Ssc.3356 /len=1906"	-	-	-	-
gnl|UG|Ssc#S35168753	64	18.43	23	6.57	44	13.22	"Sus scrofa mRNA, clone:THY010031F02, expressed in thymus /gb=AK238798 /gi=115550937 /ug=Ssc.19134 /len=2169"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0030528//transcription regulator activity;GO:0016879//ligase activity, forming carbon-nitrogen bonds;GO:0005488//binding"	GO:0050851//antigen receptor-mediated signaling pathway;GO:0051091//positive regulation of transcription factor activity;GO:0002224//toll-like receptor signaling pathway;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0016567//protein ubiquitination;GO:0048869;GO:0006301//postreplication repair	gi|296200693|ref|XP_002806823.1|/1.30036e-81/PREDICTED: LOW QUALITY PROTEIN: transmembrane protein 189-like [Callithrix jacchus]
gnl|UG|Ssc#S58302824	80	23.03	35	10	89	26.75	"PREDICTED: Sus scrofa uncharacterized protein C2orf47 homolog, mitochondrial-like (LOC100522576), mRNA /cds=p(313,1179) /gb=XM_003133571 /gi=311272863 /ug=Ssc.52438 /len=1504"	GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|311272864|ref|XP_003133619.1|/9.22525e-158/PREDICTED: uncharacterized protein C2orf47 homolog, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35165687	91	26.2	255	72.89	55	16.53	"Sus scrofa mRNA, clone:LVRM10110A04, expressed in liver /gb=AK233248 /gi=115554039 /ug=Ssc.79118 /len=1426"	-	-	-	-
gnl|UG|Ssc#S46879785	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa WD repeat domain 47, transcript variant 1 (WDR47), mRNA /cds=p(239,3001) /gb=XM_001926649 /gi=311254668 /ug=Ssc.6913 /len=3001"	-	-	-	gi|40788977|dbj|BAA74916.2|/0/KIAA0893 protein [Homo sapiens]
gnl|UG|Ssc#S55326318	0	0	2	0.57	3	0.9	"Sus scrofa mRNA, clone:OVRM10130H01, expressed in ovary /gb=AK348333 /gi=288778508 /ug=Ssc.8726 /len=3984"	GO:0044444//cytoplasmic part;GO:0000267//cell fraction	"GO:0043169//cation binding;GO:0051536//iron-sulfur cluster binding;GO:0016763//transferase activity, transferring pentosyl groups"	GO:0006144//purine base metabolic process;GO:0048609//multicellular organismal reproductive process;GO:0051260//protein homooligomerization;GO:0009064//glutamine family amino acid metabolic process;GO:0009127//purine nucleoside monophosphate biosynthetic process;GO:0009887//organ morphogenesis;GO:0007589//body fluid secretion;GO:0032868//response to insulin stimulus	gi|311262220|ref|XP_003129071.1|/0/PREDICTED: amidophosphoribosyltransferase-like [Sus scrofa]
gnl|UG|Ssc#S35174072	3	0.86	0	0	12	3.61	"Sus scrofa mRNA, clone:OVR010026A07, expressed in ovary /gb=AK234196 /gi=115545763 /ug=Ssc.25191 /len=1020"	-	-	-	gi|311251713|ref|XP_003124749.1|/1.18063e-64/PREDICTED: protein FAM195A-like [Sus scrofa]
gnl|UG|Ssc#S58313938	11	3.17	0	0	0	0	"PREDICTED: Sus scrofa ribosomal protein S6 kinase, 70kDa, polypeptide 2 (RPS6KB2), mRNA /cds=p(75,1532) /gb=XM_003122462 /gi=311247152 /ug=Ssc.22112 /len=1780"	GO:0031981//nuclear lumen;GO:0000267//cell fraction;GO:0030529//ribonucleoprotein complex	GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0007243//intracellular protein kinase cascade;GO:0006796//phosphate metabolic process;GO:0048017//inositol lipid-mediated signaling;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006446//regulation of translational initiation;GO:0006464//protein modification process	gi|311247153|ref|XP_003122510.1|/0/PREDICTED: ribosomal protein S6 kinase beta-2-like [Sus scrofa]
gnl|UG|Ssc#S58306252	0	0	0	0	0	0	"PREDICTED: Sus scrofa coiled-coil domain-containing protein 132-like (LOC100519966), mRNA /cds=p(1,540) /gb=XM_003130147 /gi=311264492 /ug=Ssc.29090 /len=1794"	-	-	-	gi|311264493|ref|XP_003130195.1|/1.44047e-99/PREDICTED: coiled-coil domain-containing protein 132-like [Sus scrofa]
gnl|UG|Ssc#S46879628	18	5.18	15	4.29	16	4.81	"PREDICTED: Sus scrofa UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3, transcript variant 2 (LOC100154856), mRNA /cds=p(320,1510) /gb=XM_001927348 /gi=194036883 /ug=Ssc.54321 /len=2045"	GO:0000139//Golgi membrane;GO:0031224//intrinsic to membrane	GO:0043169//cation binding;GO:0035250//UDP-galactosyltransferase activity	GO:0006487//protein N-linked glycosylation	"gi|311253964|ref|XP_001927370.2|/0/PREDICTED: beta-1,4-galactosyltransferase 3 isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S58307268	26	7.49	16	4.57	19	5.71	"PREDICTED: Sus scrofa pleiotropic regulator 1-like (LOC100514171), mRNA /cds=p(87,1628) /gb=XM_003129127 /gi=311262425 /ug=Ssc.18155 /len=2355"	GO:0005681//spliceosomal complex;GO:0016604//nuclear body	GO:0060089;GO:0005488//binding;GO:0003712//transcription cofactor activity	GO:0000377;GO:0023052//signaling	gi|311262426|ref|XP_003129175.1|/0/PREDICTED: pleiotropic regulator 1-like [Sus scrofa]
gnl|UG|Ssc#S21551295	81	23.32	43	12.29	76	22.84	"UMC-p2mm4-019-c05 2mm ovarian follicle p2mm Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO943843 /gi=51310602 /ug=Ssc.4160 /len=165"	-	-	-	-
gnl|UG|Ssc#S35325791	3	0.86	0	0	2	0.6	"SusFleck_BF_0033_0036_5_pCNS_D01 SusFleck Backfat Sus scrofa cDNA clone 0033_0036_D01 5', mRNA sequence /clone=0033_0036_D01 /clone_end=5' /gb=DT324183 /gi=116337731 /ug=Ssc.10398 /len=863"	GO:0043256//laminin complex	GO:0005198//structural molecule activity	GO:0009888//tissue development;GO:0030030//cell projection organization;GO:0048870//cell motility;GO:0007044//cell-substrate junction assembly;GO:0006935//chemotaxis;GO:0008284//positive regulation of cell proliferation;GO:0065003;GO:0030198//extracellular matrix organization;GO:0000904//cell morphogenesis involved in differentiation	gi|296478938|gb|DAA21053.1|/1.02581e-92/laminin B2-like [Bos taurus]
gnl|UG|Ssc#S58301134	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa G-protein coupled receptor-associated sorting protein 1-like (LOC100523039), mRNA /cds=p(1,4155) /gb=XM_003135259 /gi=311276679 /ug=Ssc.2494 /len=4482"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|311276680|ref|XP_003135307.1|/0/PREDICTED: G-protein coupled receptor-associated sorting protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55285364	0	0	0	0	2	0.6	"FS677951 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010094H01 5', mRNA sequence /clone=KDN010094H01 /clone_end=5' /gb=FS677951 /gi=288280405 /ug=Ssc.50228 /len=923"	GO:0043231//intracellular membrane-bounded organelle	GO:0003723//RNA binding;GO:0016740//transferase activity;GO:0048037//cofactor binding	GO:0006451//translational readthrough	gi|297292397|ref|XP_001082141.2|/3.59611e-171/PREDICTED: o-phosphoseryl-tRNA(Sec) selenium transferase-like [Macaca mulatta]
gnl|UG|Ssc#S58313809	2	0.58	6	1.72	6	1.8	"PREDICTED: Sus scrofa MACRO domain-containing protein 1-like (LOC100522538), mRNA /cds=p(236,1246) /gb=XM_003122582 /gi=311247418 /ug=Ssc.26469 /len=1349"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311247419|ref|XP_003122630.1|/5.52186e-159/PREDICTED: MACRO domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46878790	24	6.91	16	4.57	18	5.41	"PREDICTED: Sus scrofa serine palmitoyltransferase, long chain base subunit 2 (SPTLC2), mRNA /cds=p(1,2313) /gb=XM_001926590 /gi=311261388 /ug=Ssc.37680 /len=2573"	GO:0031224//intrinsic to membrane;GO:0031211//endoplasmic reticulum palmitoyltransferase complex	GO:0016454;GO:0048037//cofactor binding	GO:0006684//sphingomyelin metabolic process;GO:0006667//sphinganine metabolic process;GO:0006670//sphingosine metabolic process;GO:0006672//ceramide metabolic process	gi|311261389|ref|XP_001926625.2|/0/PREDICTED: LOW QUALITY PROTEIN: serine palmitoyltransferase 2 [Sus scrofa]
gnl|UG|Ssc#S58303949	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa solute carrier family 25 member 36-like, transcript variant 2 (LOC100513238), mRNA /cds=p(201,986) /gb=XM_003132448 /gi=311269460 /ug=Ssc.30525 /len=2269"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	-	GO:0043627//response to estrogen stimulus;GO:0006810//transport	gi|311269459|ref|XP_003132495.1|/2.20219e-168/PREDICTED: solute carrier family 25 member 36-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58310418	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa ADP-ribosylation factor GTPase-activating protein 3-like, transcript variant 1 (LOC100523962), mRNA /cds=p(96,1649) /gb=XM_003125980 /gi=311254968 /ug=Ssc.6560 /len=2712"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0012505//endomembrane system	GO:0005083//small GTPase regulator activity;GO:0008047//enzyme activator activity;GO:0022892;GO:0046914//transition metal ion binding	GO:0032012//regulation of ARF protein signal transduction;GO:0015031//protein transport	gi|311254969|ref|XP_003126028.1|/0/PREDICTED: ADP-ribosylation factor GTPase-activating protein 3-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S23213282	285	82.05	382	109.19	267	80.24	"Sus scrofa clone Clu_27891.scr.msk.p1.Contig1, mRNA sequence /gb=AY609726 /gi=52351294 /ug=Ssc.29482 /len=1774"	GO:0005626//insoluble fraction;GO:0031252//cell leading edge;GO:0031090//organelle membrane;GO:0005768//endosome	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0019899//enzyme binding	GO:0034613//cellular protein localization;GO:0012501//programmed cell death;GO:0045806//negative regulation of endocytosis;GO:0030041//actin filament polymerization;GO:0048513//organ development;GO:0009207;GO:0016601//Rac protein signal transduction;GO:0048522;GO:0050773//regulation of dendrite development	gi|291403824|ref|XP_002718343.1|/3.72476e-108/PREDICTED: mCG3164-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S55318239	40	11.52	17	4.86	63	18.93	"Sus scrofa annexin A1 (ANXA1), mRNA /cds=p(180,1220) /gb=NM_001163998 /gi=255683367 /ug=Ssc.14559 /len=1536"	GO:0043231//intracellular membrane-bounded organelle;GO:0005856//cytoskeleton;GO:0042995//cell projection;GO:0044459//plasma membrane part	GO:0005515//protein binding;GO:0005543//phospholipid binding;GO:0046872//metal ion binding;GO:0004859//phospholipase inhibitor activity	GO:0030217//T cell differentiation;GO:0015909//long-chain fatty acid transport;GO:0008283//cell proliferation;GO:0006906//vesicle fusion;GO:0009913//epidermal cell differentiation;GO:0007165//signal transduction;GO:0006464//protein modification process;GO:0006952//defense response;GO:0043066//negative regulation of apoptosis	gi|255683368|ref|NP_001157470.1|/0/annexin A1 [Sus scrofa]
gnl|UG|Ssc#S58310090	5	1.44	10	2.86	4	1.2	"PREDICTED: Sus scrofa hypothetical protein LOC100516079 (LOC100516079), mRNA /cds=p(235,3255) /gb=XM_003126306 /gi=311255769 /ug=Ssc.63702 /len=4152"	GO:0043229//intracellular organelle	GO:0003676//nucleic acid binding	-	gi|311255770|ref|XP_003126354.1|/2.42625e-114/PREDICTED: hypothetical protein LOC100516079 [Sus scrofa]
gnl|UG|Ssc#S20116410	2	0.58	0	0	0	0	"Sus scrofa inhibitor of apoptosis-like (PIAP), mRNA /cds=p(48,1124) /gb=NM_214181 /gi=47523443 /ug=Ssc.16110 /len=1550"	-	-	-	-
gnl|UG|Ssc#S58305739	28	8.06	13	3.72	18	5.41	"PREDICTED: Sus scrofa dynactin subunit 3-like, transcript variant 1 (LOC100521815), mRNA /cds=p(97,657) /gb=XM_003130656 /gi=311265548 /ug=Ssc.1441 /len=1210"	GO:0005875//microtubule associated complex;GO:0000776//kinetochore;GO:0032155;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0000087//M phase of mitotic cell cycle	gi|311265549|ref|XP_003130704.1|/3.37867e-96/PREDICTED: dynactin subunit 3-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46876325	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa nebulin-like (LOC100153001), mRNA /cds=p(58,7005) /gb=XM_001926974 /gi=311273462 /ug=Ssc.22191 /len=7005"	-	-	-	gi|311273463|ref|XP_001927009.2|/0/PREDICTED: nebulin-like [Sus scrofa]
gnl|UG|Ssc#S18308318	2	0.58	2	0.57	0	0	"BP445980 full-length enriched swine cDNA library, adult liver Sus scrofa cDNA clone LVR010056F08 5', mRNA sequence /clone=LVR010056F08 /clone_end=5' /gb=BP445980 /gi=40436047 /ug=Ssc.84338 /len=831"	"GO:0016591//DNA-directed RNA polymerase II, holoenzyme;GO:0031224//intrinsic to membrane"	GO:0005488//binding	GO:0016073	gi|148231314|ref|NP_001091495.1|/1.39006e-99/integrator complex subunit 5 [Bos taurus]
gnl|UG|Ssc#S58312737	172	49.52	289	82.61	95	28.55	"PREDICTED: Sus scrofa PRELI domain-containing protein 1, mitochondrial-like (LOC100512335), mRNA /cds=p(207,866) /gb=XM_003123680 /gi=311249596 /ug=Ssc.4589 /len=1292"	GO:0031981//nuclear lumen	-	GO:0032501//multicellular organismal process;GO:0002376//immune system process	"gi|311249597|ref|XP_003123728.1|/8.77728e-98/PREDICTED: PRELI domain-containing protein 1, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35167305	16	4.61	25	7.15	23	6.91	"Sus scrofa mRNA, clone:OVRM10193A12, expressed in ovary /gb=AK236439 /gi=115552434 /ug=Ssc.5967 /len=1747"	GO:0035097//histone methyltransferase complex;GO:0016604//nuclear body;GO:0000803	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0003002//regionalization;GO:0048592//eye morphogenesis;GO:0016567//protein ubiquitination;GO:0006325//chromatin organization	gi|301757099|ref|XP_002914380.1|/1.1403e-93/PREDICTED: e3 ubiquitin-protein ligase RING1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35167523	4	1.15	2	0.57	7	2.1	"Sus scrofa mRNA, clone:AMP010006B09, expressed in alveolar macrophage /gb=AK230525 /gi=115552216 /ug=Ssc.20060 /len=2743"	GO:0043234//protein complex;GO:0044464//cell part	GO:0008134//transcription factor binding;GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination	"gi|297669631|ref|XP_002812996.1|/0/PREDICTED: probable E3 ubiquitin-protein ligase TRIP12-like, partial [Pongo abelii]"
gnl|UG|Ssc#S58314961	6	1.73	0	0	5	1.5	"PREDICTED: Sus scrofa malic enzyme 2, NAD(+)-dependent, mitochondrial (ME2), mRNA /cds=p(244,1962) /gb=XM_003121443 /gi=311244538 /ug=Ssc.904 /len=2648"	GO:0044429//mitochondrial part	GO:0043169//cation binding;GO:0004470//malic enzyme activity;GO:0000166//nucleotide binding	GO:0043648//dicarboxylic acid metabolic process	"gi|311244539|ref|XP_003121491.1|/0/PREDICTED: NAD-dependent malic enzyme, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S6091501	305	87.81	161	46.02	312	93.76	"Pig mRNA for endoplasmic-reticulum Ca(2+)-transport ATPase (class 3 non-muscle transcript) /cds=p(1,166) /gb=X16951 /gi=1924 /ug=Ssc.22641 /len=4211"	GO:0032991//macromolecular complex;GO:0016021//integral to membrane;GO:0005789//endoplasmic reticulum membrane;GO:0042598//vesicular fraction	GO:0001664//G-protein-coupled receptor binding;GO:0019829//cation-transporting ATPase activity;GO:0046872//metal ion binding;GO:0032559	GO:0009888//tissue development;GO:0007599//hemostasis;GO:0008016//regulation of heart contraction;GO:0006816//calcium ion transport;GO:0006936//muscle contraction;GO:0007165//signal transduction;GO:0001775//cell activation;GO:0009206;GO:0009725//response to hormone stimulus;GO:0006875//cellular metal ion homeostasis	gi|297692926|ref|XP_002823792.1|/2.79394e-25/PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2-like [Pongo abelii]
gnl|UG|Ssc#S39928690	13	3.74	5	1.43	11	3.31	"rcst37_b24.y1 cst Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW023755 /gi=181340603 /ug=Ssc.61379 /len=692"	-	GO:0005488//binding	GO:0019725//cellular homeostasis;GO:0006451//translational readthrough	gi|256773246|ref|NP_001157959.1|/2.7062e-73/selenoprotein T [Canis lupus familiaris]
gnl|UG|Ssc#S58313287	83	23.9	138	39.45	113	33.96	"PREDICTED: Sus scrofa putative ATP-dependent Clp protease proteolytic subunit, mitochondrial-like (LOC100517328), mRNA /cds=p(41,820) /gb=XM_003123113 /gi=311248479 /ug=Ssc.19154 /len=923"	GO:0044429//mitochondrial part	GO:0004175//endopeptidase activity;GO:0005515//protein binding;GO:0032559	GO:0019538//protein metabolic process;GO:0051259//protein oligomerization	"gi|311248480|ref|XP_003123161.1|/2.87593e-136/PREDICTED: putative ATP-dependent Clp protease proteolytic subunit, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35167370	27	7.77	22	6.29	16	4.81	"Sus scrofa mRNA, clone:OVRM10186D01, expressed in ovary /gb=AK236374 /gi=115552369 /ug=Ssc.5852 /len=2745"	GO:0005635//nuclear envelope	GO:0005488//binding	GO:0050658//RNA transport;GO:0015758//glucose transport;GO:0044238//primary metabolic process	gi|114662650|ref|XP_510982.2|/0/PREDICTED: nucleoporin 93kDa [Pan troglodytes]
gnl|UG|Ssc#S58302641	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100514803 (LOC100514803), mRNA /cds=p(1,1218) /gb=XM_003133756 /gi=311273301 /ug=Ssc.88250 /len=1218"	GO:0044424//intracellular part	GO:0005083//small GTPase regulator activity;GO:0008047//enzyme activator activity;GO:0046914//transition metal ion binding;GO:0032561	GO:0006810//transport;GO:0043087//regulation of GTPase activity;GO:0032012//regulation of ARF protein signal transduction	gi|311273302|ref|XP_003133804.1|/0/PREDICTED: hypothetical protein LOC100514803 [Sus scrofa]
gnl|UG|Ssc#S26731491	129	37.14	70	20.01	56	16.83	"AJ942217 CSEQRAN17 Sus scrofa cDNA clone C0007320b12 3', mRNA sequence /clone=C0007320b12 /clone_end=3' /gb=AJ942217 /gi=74359215 /ug=Ssc.10198 /len=877"	-	-	-	-
gnl|UG|Ssc#S55323982	6	1.73	6	1.72	12	3.61	"Sus scrofa mRNA, clone:AMP010014F11, expressed in alveolar macrophages /gb=AK343679 /gi=288780890 /ug=Ssc.23043 /len=2077"	GO:0019866//organelle inner membrane;GO:0005759//mitochondrial matrix	"GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0000166//nucleotide binding;GO:0005504//fatty acid binding;GO:0016836//hydro-lyase activity;GO:0016408"	GO:0009062//fatty acid catabolic process	"gi|73979871|ref|XP_849696.1|/0/PREDICTED: similar to Trifunctional enzyme beta subunit, mitochondrial precursor (TP-beta) isoform 1 [Canis familiaris]"
gnl|UG|Ssc#S55327685	8	2.3	7	2	13	3.91	"Sus scrofa suppressor of cytokine signaling 1 (SOCS1) mRNA, partial cds /cds=p(1,465) /gb=GQ421919 /gi=257782210 /ug=Ssc.26216 /len=871"	GO:0044444//cytoplasmic part	GO:0005102//receptor binding;GO:0019887//protein kinase regulator activity;GO:0004857//enzyme inhibitor activity;GO:0019900//kinase binding	GO:0010741;GO:0001959//regulation of cytokine-mediated signaling pathway;GO:0043627//response to estrogen stimulus;GO:0042503//tyrosine phosphorylation of Stat3 protein;GO:0009887//organ morphogenesis;GO:0030154//cell differentiation;GO:0002237//response to molecule of bacterial origin	gi|297698103|ref|XP_002826169.1|/1.3682e-84/PREDICTED: suppressor of cytokine signaling 1-like [Pongo abelii]
gnl|UG|Ssc#S35165853	183	52.69	69	19.72	186	55.9	"Sus scrofa mRNA, clone:PBL010031B03, expressed in periphral blood mononuclear cell /gb=AK236878 /gi=115553873 /ug=Ssc.9889 /len=2745"	GO:0044432//endoplasmic reticulum part;GO:0048770;GO:0044425//membrane part;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0070325//lipoprotein particle receptor binding;GO:0032559;GO:0019902//phosphatase binding	GO:0006810//transport;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0006874//cellular calcium ion homeostasis;GO:0033198//response to ATP;GO:0010921;GO:0007015//actin filament organization;GO:0006950//response to stress;GO:0043066//negative regulation of apoptosis	gi|47523016|ref|NP_999268.1|/0/endoplasmin precursor [Sus scrofa]
gnl|UG|Ssc#S40305330	17	4.89	31	8.86	10	3.01	"rmgm025_a17.y1 mgm Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW399937 /gi=182852772 /ug=Ssc.68853 /len=266"	-	-	-	-
gnl|UG|Ssc#S58309869	6	1.73	3	0.86	8	2.4	"PREDICTED: Sus scrofa condensin complex subunit 1-like (LOC100518610), mRNA /cds=p(1,3171) /gb=XM_003126542 /gi=311256276 /ug=Ssc.14113 /len=3420"	GO:0000796//condensin complex;GO:0005634//nucleus	GO:0005515//protein binding	GO:0000070//mitotic sister chromatid segregation;GO:0015031//protein transport	gi|311256277|ref|XP_003126590.1|/0/PREDICTED: condensin complex subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S18283568	10	2.88	6	1.72	6	1.8	"BP439465 full-length enriched swine cDNA library, adult lung Sus scrofa cDNA clone LNG010016G07 5', mRNA sequence /clone=LNG010016G07 /clone_end=5' /gb=BP439465 /gi=40429532 /ug=Ssc.23634 /len=657"	-	-	-	-
gnl|UG|Ssc#S58313771	47	13.53	16	4.57	56	16.83	"PREDICTED: Sus scrofa fatty acid desaturase 3-like (LOC100518057), mRNA /cds=p(174,1505) /gb=XM_003122629 /gi=311247502 /ug=Ssc.28485 /len=1781"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	"GO:0005506//iron ion binding;GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"	GO:0051234//establishment of localization;GO:0006633//fatty acid biosynthetic process;GO:0006091//generation of precursor metabolites and energy	gi|222090426|gb|ACM42421.1|/0/fatty acid desaturase 3 [Sus scrofa]
gnl|UG|Ssc#S52128950	6	1.73	0	0	2	0.6	"Sus scrofa jumonji AT-rich interactive domain 1A transcript variant 1 (JARID1A) mRNA, partial cds /cds=p(1,3385) /gb=EU661935 /gi=197692937 /ug=Ssc.13085 /len=4246"	GO:0043234//protein complex;GO:0031981//nuclear lumen	"GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0001071//nucleic acid binding transcription factor activity"	"GO:0032501//multicellular organismal process;GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|197692940|gb|ACH71258.1|/0/jumonji AT-rich interactive domain 1A transcript variant 2 [Sus scrofa]
gnl|UG|Ssc#S50158862	2	0.58	0	0	4	1.2	"susfleck_PG_71_G10 SUSFLECK Pituitary Gland Sus scrofa cDNA clone 71_G10, mRNA sequence /clone=71_G10 /gb=FD590698 /gi=221012526 /ug=Ssc.56190 /len=745"	GO:0044424//intracellular part	GO:0008138//protein tyrosine/serine/threonine phosphatase activity;GO:0019901//protein kinase binding;GO:0019887//protein kinase regulator activity;GO:0032947//protein complex scaffold	GO:0043410//positive regulation of MAPKKK cascade;GO:0043409//negative regulation of MAPKKK cascade;GO:0043407//negative regulation of MAP kinase activity;GO:0043406//positive regulation of MAP kinase activity;GO:0006470//protein dephosphorylation	gi|149642899|ref|NP_001092348.1|/2.2192e-111/dual specificity protein phosphatase 19 [Bos taurus]
gnl|UG|Ssc#S46878459	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa cullin 7 (CUL7), mRNA /cds=p(1,5154) /gb=XM_001929214 /gi=194039308 /ug=Ssc.9773 /len=5223"	GO:0000152//nuclear ubiquitin ligase complex	GO:0019899//enzyme binding	GO:0006915//apoptosis;GO:0007088//regulation of mitosis;GO:0019941//modification-dependent protein catabolic process;GO:0030856//regulation of epithelial cell differentiation	gi|194039309|ref|XP_001929249.1|/0/PREDICTED: cullin-7 [Sus scrofa]
gnl|UG|Ssc#S46875786	3	0.86	0	0	4	1.2	"PREDICTED: Sus scrofa centrin 2 (LOC606742), mRNA /cds=p(1,822) /gb=XM_001927209 /gi=194044859 /ug=Ssc.43409 /len=1344"	GO:0031513//nonmotile primary cilium;GO:0005813//centrosome;GO:0000109//nucleotide-excision repair complex	"GO:0046872//metal ion binding;GO:0032559;GO:0032403//protein complex binding;GO:0042623//ATPase activity, coupled"	GO:0007017//microtubule-based process;GO:0009207;GO:0048232//male gamete generation;GO:0000087//M phase of mitotic cell cycle;GO:0000910//cytokinesis;GO:0006281//DNA repair	gi|194044860|ref|XP_001927244.1|/3.72655e-123/PREDICTED: centrin-2 [Sus scrofa]
gnl|UG|Ssc#S58309782	5	1.44	13	3.72	2	0.6	"PREDICTED: Sus scrofa NEL-like 2 (chicken) (NELL2), mRNA /cds=p(1,1476) /gb=XM_003126617 /gi=311256461 /ug=Ssc.28674 /len=2957"	GO:0044444//cytoplasmic part;GO:0005635//nuclear envelope	GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0006605//protein targeting;GO:0016567//protein ubiquitination;GO:0031331	gi|311256462|ref|XP_003126665.1|/0/PREDICTED: prickle-like protein 1 [Sus scrofa]
gnl|UG|Ssc#S6091485	0	0	3	0.86	2	0.6	"Sus scrofa mRNA for glucose transporte protein /cds=p(1,1356) /gb=X17058 /gi=1955 /ug=Ssc.6391 /len=2230"	GO:0005626//insoluble fraction;GO:0030054//cell junction;GO:0016021//integral to membrane;GO:0045120//pronucleus;GO:0048770	GO:0005402;GO:0005355//glucose transmembrane transporter activity;GO:0051183//vitamin transporter activity;GO:0019899//enzyme binding	GO:0044238//primary metabolic process;GO:0009267//cellular response to starvation;GO:0006766//vitamin metabolic process;GO:0015758//glucose transport;GO:0030073//insulin secretion;GO:0015980//energy derivation by oxidation of organic compounds;GO:0051180//vitamin transport	"gi|121753|sp|P20303.1|GTR1_PIG/0/RecName: Full=Solute carrier family 2, facilitated glucose transporter member 1; AltName: Full=Glucose transporter type 1, erythrocyte/brain; Short=GLUT-1"
gnl|UG|Ssc#S46879684	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa paired mesoderm homeobox protein 1-like (LOC100157992), mRNA /cds=p(491,1228) /gb=XM_001927459 /gi=311253857 /ug=Ssc.26617 /len=1346"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0048704//embryonic skeletal system morphogenesis;GO:0048514//blood vessel morphogenesis;GO:0009888//tissue development;GO:0042471//ear morphogenesis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0008589//regulation of smoothened signaling pathway;GO:0035108//limb morphogenesis;GO:0008284//positive regulation of cell proliferation	gi|6755116|ref|NP_035257.1|/1.72704e-128/paired mesoderm homeobox protein 1 isoform a [Mus musculus]
gnl|UG|Ssc#S35169211	2	0.58	2	0.57	8	2.4	"Sus scrofa mRNA, clone:LVR010049H09, expressed in liver /gb=AK232458 /gi=115550628 /ug=Ssc.27516 /len=1265"	GO:0043296//apical junction complex;GO:0019898//extrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031410//cytoplasmic vesicle;GO:0012506//vesicle membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0035556//intracellular signal transduction;GO:0009207;GO:0015031//protein transport	gi|114559803|ref|XP_522433.2|/3.84706e-120/PREDICTED: similar to RAB13 protein [Pan troglodytes]
gnl|UG|Ssc#S35172519	29	8.35	5	1.43	9	2.7	"Sus scrofa mRNA, clone:OVRM10006G03, expressed in ovary /gb=AK234689 /gi=115547316 /ug=Ssc.56468 /len=1876"	GO:0044444//cytoplasmic part	"GO:0017111//nucleoside-triphosphatase activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561"	GO:0006413//translational initiation;GO:0009207	gi|149737689|ref|XP_001490455.1|/0/PREDICTED: eukaryotic translation initiation factor 5 [Equus caballus]
gnl|UG|Ssc#S55326361	18	5.18	4	1.14	14	4.21	"Sus scrofa mRNA, clone:OVRM10118H02, expressed in ovary /gb=AK348290 /gi=288778465 /ug=Ssc.27634 /len=2149"	GO:0005643//nuclear pore;GO:0000776//kinetochore;GO:0044444//cytoplasmic part;GO:0005819//spindle	GO:0005488//binding	GO:0044238//primary metabolic process;GO:0050658//RNA transport;GO:0015758//glucose transport;GO:0007067//mitosis;GO:0030595//leukocyte chemotaxis;GO:0030031//cell projection assembly	gi|311266801|ref|XP_003131259.1|/0/PREDICTED: nuclear pore complex protein Nup85-like [Sus scrofa]
gnl|UG|Ssc#S55326400	307	88.39	513	146.64	282	84.75	"Sus scrofa mRNA, clone:OVRM10108B08, expressed in ovary /gb=AK348251 /gi=288778426 /ug=Ssc.62136 /len=1679"	GO:0031224//intrinsic to membrane;GO:0031966//mitochondrial membrane	-	-	gi|73993886|ref|XP_860587.1|/4.83273e-110/PREDICTED: hypothetical protein XP_855494 isoform 12 [Canis familiaris]
gnl|UG|Ssc#S17511288	10	2.88	20	5.72	7	2.1	"BX667362 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0002.f.12 3prim, mRNA sequence /clone=scag0002.f.12 /clone_end=3' /gb=BX667362 /gi=90241709 /ug=Ssc.40045 /len=879"	-	-	-	gi|90080215|dbj|BAE89589.1|/4.09596e-28/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S58302208	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100516118 (LOC100516118), mRNA /cds=p(1,2367) /gb=XM_003134195 /gi=311274199 /ug=Ssc.42691 /len=3071"	GO:0031224//intrinsic to membrane	GO:0008415//acyltransferase activity;GO:0046914//transition metal ion binding	GO:0006497//protein lipidation	gi|311274200|ref|XP_003134243.1|/0/PREDICTED: hypothetical protein LOC100516118 [Sus scrofa]
gnl|UG|Ssc#S6091506	0	0	3	0.86	0	0	"Porcine mRNA for cAMP-dependent protein kinase catalytic (C)-beta subunit (CAT3) /cds=p(1,1017) /gb=X05998 /gi=1910 /ug=Ssc.57600 /len=1799"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0045202//synapse	GO:0051018//protein kinase A binding;GO:0004690//cyclic nucleotide-dependent protein kinase activity;GO:0046872//metal ion binding;GO:0032559;GO:0019900//kinase binding	"GO:0046824//positive regulation of nucleocytoplasmic transport;GO:0033762//response to glucagon stimulus;GO:0045786//negative regulation of cell cycle;GO:0032147//activation of protein kinase activity;GO:0051969;GO:0007187//G-protein signaling, coupled to cyclic nucleotide second messenger;GO:0032870//cellular response to hormone stimulus;GO:0001704//formation of primary germ layer"	gi|1911|emb|CAA29415.1|/0/C-beta subunit (338 AA) [Sus scrofa]
gnl|UG|Ssc#S58310828	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa anion exchange transporter-like (LOC100516262), mRNA /cds=p(1,3084) /gb=XM_003125573 /gi=311253635 /ug=Ssc.39104 /len=3084"	GO:0031224//intrinsic to membrane;GO:0044459//plasma membrane part;GO:0010008//endosome membrane	GO:0015103//inorganic anion transmembrane transporter activity;GO:0005253//anion channel activity;GO:0005310//dicarboxylic acid transmembrane transporter activity	GO:0015698//inorganic anion transport;GO:0006835//dicarboxylic acid transport;GO:0022600//digestive system process	gi|311253636|ref|XP_003125621.1|/0/PREDICTED: anion exchange transporter-like [Sus scrofa]
gnl|UG|Ssc#S58310732	51	14.68	32	9.15	37	11.12	"PREDICTED: Sus scrofa transgelin-2-like (LOC100515893), mRNA /cds=p(1,882) /gb=XM_003125672 /gi=311254017 /ug=Ssc.18388 /len=1556"	GO:0005635//nuclear envelope;GO:0016020//membrane	GO:0005488//binding	GO:0048513//organ development	gi|311254018|ref|XP_003125720.1|/2.89286e-170/PREDICTED: transgelin-2-like [Sus scrofa]
gnl|UG|Ssc#S31130933	27	7.77	15	4.29	20	6.01	"1569870 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY434771 /gi=87236074 /ug=Ssc.89441 /len=535"	-	-	-	-
gnl|UG|Ssc#S58304379	10	2.88	2	0.57	7	2.1	"PREDICTED: Sus scrofa protein FAM18B-like, transcript variant 1 (LOC100522572), mRNA /cds=p(117,734) /gb=XM_003132018 /gi=311268462 /ug=Ssc.81526 /len=1867"	GO:0031224//intrinsic to membrane	-	-	gi|311268463|ref|XP_003132066.1|/9.4488e-110/PREDICTED: protein FAM18B-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35169370	8	2.3	0	0	0	0	"Sus scrofa mRNA, clone:THY010022E10, expressed in thymus /gb=AK238734 /gi=115550469 /ug=Ssc.18662 /len=1877"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0051732;GO:0051733//polydeoxyribonucleotide kinase activity;GO:0032559	"GO:0006796//phosphate metabolic process;GO:0000377;GO:0006399//tRNA metabolic process;GO:0000394//RNA splicing, via endonucleolytic cleavage and ligation;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent;GO:0016246//RNA interference"	gi|126165292|ref|NP_001075182.1|/0/polyribonucleotide 5'-hydroxyl-kinase Clp1 [Bos taurus]
gnl|UG|Ssc#S6091050	0	0	0	0	118	35.46	"Sus scrofa porcine endogenous retrovirus ERV-PK15 mRNA, complete sequence /cds=p(598,2172) /gb=AF038601 /gi=3133304 /ug=Ssc.82466 /len=7333"	GO:0044423	"GO:0003676//nucleic acid binding;GO:0004175//endopeptidase activity;GO:0016891//endoribonuclease activity, producing 5'-phosphomonoesters;GO:0046914//transition metal ion binding;GO:0034061"	"GO:0019067//viral assembly, maturation, egress, and release;GO:0006260//DNA replication;GO:0019538//protein metabolic process"	gi|115418812|emb|CAJ76246.1|/0/polyprotein [Sus scrofa]
gnl|UG|Ssc#S55322187	114	32.82	96	27.44	83	24.94	"Sus scrofa mRNA, clone:DCI010110G10, expressed in dendritic cells (immature) /gb=AK344696 /gi=288782685 /ug=Ssc.2281 /len=2557"	-	-	-	gi|114684128|ref|XP_001170353.1|/1.49009e-55/PREDICTED: hypothetical protein [Pan troglodytes]
gnl|UG|Ssc#S23691140	3	0.86	3	0.86	2	0.6	"1097130 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN102239 /gi=59775015 /ug=Ssc.86998 /len=259"	GO:0031981//nuclear lumen;GO:0015630//microtubule cytoskeleton	GO:0003723//RNA binding	GO:0051234//establishment of localization	gi|68533083|dbj|BAE06096.1|/3.7273e-22/STAU2 variant protein [Homo sapiens]
gnl|UG|Ssc#S35170349	3	0.86	2	0.57	2	0.6	"Sus scrofa mRNA, clone:OVRM10089B01, expressed in ovary /gb=AK235512 /gi=115549490 /ug=Ssc.26053 /len=2532"	GO:0044444//cytoplasmic part	GO:0042802//identical protein binding;GO:0046914//transition metal ion binding;GO:0004177//aminopeptidase activity	GO:0019538//protein metabolic process;GO:0043171//peptide catabolic process	gi|311271819|ref|XP_003133228.1|/0/PREDICTED: xaa-Pro aminopeptidase 1 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S46876736	13	3.74	6	1.72	15	4.51	"PREDICTED: Sus scrofa huntingtin interacting protein 1 related (HIP1R), mRNA /cds=p(1,3243) /gb=XM_001925823 /gi=311270582 /ug=Ssc.6647 /len=4312"	GO:0012505//endomembrane system;GO:0043232;GO:0030136//clathrin-coated vesicle;GO:0005626//insoluble fraction	GO:0005543//phospholipid binding;GO:0008092//cytoskeletal protein binding	GO:0006897//endocytosis	gi|311270583|ref|XP_001925858.2|/0/PREDICTED: huntingtin-interacting protein 1-related protein-like [Sus scrofa]
gnl|UG|Ssc#S58301740	3	0.86	2	0.57	8	2.4	"PREDICTED: Sus scrofa caldesmon-like (LOC100524227), mRNA /cds=p(558,3173) /gb=XM_003134653 /gi=311275364 /ug=Ssc.17313 /len=5577"	-	-	-	-
gnl|UG|Ssc#S58314751	0	0	0	0	0	0	"PREDICTED: Sus scrofa chondroitin sulfate synthase 1-like (LOC100520288), mRNA /cds=p(1,2412) /gb=XM_003121647 /gi=311245115 /ug=Ssc.10053 /len=3842"	GO:0031224//intrinsic to membrane;GO:0000139//Golgi membrane	GO:0015020//glucuronosyltransferase activity;GO:0043169//cation binding;GO:0008376//acetylgalactosaminyltransferase activity	GO:0006024//glycosaminoglycan biosynthetic process;GO:0009887//organ morphogenesis	gi|311245116|ref|XP_003121695.1|/0/PREDICTED: chondroitin sulfate synthase 1-like [Sus scrofa]
gnl|UG|Ssc#S55324120	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:SMG010071A04, expressed in submaxillary gland /gb=AK350088 /gi=288780752 /ug=Ssc.55256 /len=1703"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0004879//ligand-dependent nuclear receptor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0009888//tissue development;GO:0030278//regulation of ossification;GO:0009755//hormone-mediated signaling pathway;GO:0008283//cell proliferation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0002761//regulation of myeloid leukocyte differentiation	gi|55636313|ref|XP_522050.1|/2.47796e-61/PREDICTED: estrogen-related receptor alpha [Pan troglodytes]
gnl|UG|Ssc#S58308759	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa UPF0485 protein C1orf144 homolog (LOC100523067), mRNA /cds=p(1,459) /gb=XM_003127640 /gi=311258586 /ug=Ssc.9053 /len=1497"	-	-	-	"gi|291412196|ref|XP_002722379.1|/1.11181e-70/PREDICTED: putative MAPK activating protein PM20,PM21 [Oryctolagus cuniculus]"
gnl|UG|Ssc#S58314787	34	9.79	32	9.15	57	17.13	"PREDICTED: Sus scrofa signal recognition particle 14 kDa protein-like (LOC100522176), mRNA /cds=p(67,399) /gb=XM_003121602 /gi=311245030 /ug=Ssc.56006 /len=3355"	GO:0048500//signal recognition particle	GO:0003723//RNA binding;GO:0005048//signal sequence binding	GO:0006448//regulation of translational elongation;GO:0042221//response to chemical stimulus;GO:0006613//cotranslational protein targeting to membrane	gi|311245031|ref|XP_003121650.1|/3.24086e-45/PREDICTED: signal recognition particle 14 kDa protein-like [Sus scrofa]
gnl|UG|Ssc#S58304720	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa probable ATP-dependent RNA helicase DHX40-like, transcript variant 1 (LOC100519272), mRNA /cds=p(64,2403) /gb=XM_003131664 /gi=311267760 /ug=Ssc.34688 /len=3560"	-	"GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0009207	gi|73966746|ref|XP_537699.2|/0/PREDICTED: similar to DEAH (Asp-Glu-Ala-His) box polypeptide 40 [Canis familiaris]
gnl|UG|Ssc#S35334037	0	0	3	0.86	4	1.2	"SusFleck_BFN_0013_0016_5_pCNS_B18 SusFleck Backfat Normalized Sus scrofa cDNA clone 0013_0016_B18 5', mRNA sequence /clone=0013_0016_B18 /clone_end=5' /gb=DT332434 /gi=116349802 /ug=Ssc.90089 /len=811"	GO:0016021//integral to membrane	-	-	gi|110347572|ref|NP_776599.2|/4.61718e-76/rod outer segment membrane protein 1 [Bos taurus]
gnl|UG|Ssc#S35165321	5	1.44	2	0.57	8	2.4	"Sus scrofa mRNA, clone:LVRM10143D08, expressed in liver /gb=AK233415 /gi=115554405 /ug=Ssc.44112 /len=1840"	GO:0031224//intrinsic to membrane	GO:0004175//endopeptidase activity	-	gi|311251109|ref|XP_003124448.1|/1.15158e-168/PREDICTED: rhomboid domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S23760199	2	0.58	0	0	0	0	"1117521 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN117818 /gi=59812078 /ug=Ssc.38157 /len=799"	-	-	-	gi|148669449|gb|EDL01396.1|/4.73136e-09/mCG1027314 [Mus musculus]
gnl|UG|Ssc#S35167144	24	6.91	84	24.01	37	11.12	"Sus scrofa mRNA, clone:LVRM10029A08, expressed in liver /gb=AK232800 /gi=115552595 /ug=Ssc.10451 /len=1520"	GO:0048770;GO:0044421//extracellular region part	GO:0004866//endopeptidase inhibitor activity	GO:0001525//angiogenesis;GO:0031348//negative regulation of defense response;GO:0007613//memory;GO:0033189//response to vitamin A;GO:0010720//positive regulation of cell development;GO:0048513//organ development;GO:0050680//negative regulation of epithelial cell proliferation;GO:0031960//response to corticosteroid stimulus;GO:0006508//proteolysis;GO:0010466//negative regulation of peptidase activity	gi|118403912|ref|NP_001072130.1|/0/pigment epithelium-derived factor [Sus scrofa]
gnl|UG|Ssc#S58309722	6	1.73	5	1.43	3	0.9	"PREDICTED: Sus scrofa synaptonemal complex protein 3-like (LOC100523378), mRNA /cds=p(74,784) /gb=XM_003126677 /gi=311256598 /ug=Ssc.53960 /len=1081"	GO:0000795//synaptonemal complex;GO:0043073//germ cell nucleus	GO:0003676//nucleic acid binding;GO:0046983//protein dimerization activity	GO:0016321//female meiosis chromosome segregation;GO:0006915//apoptosis;GO:0000087//M phase of mitotic cell cycle;GO:0007129//synapsis;GO:0048232//male gamete generation;GO:0043486//histone exchange	gi|311256599|ref|XP_003126725.1|/7.47697e-129/PREDICTED: synaptonemal complex protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58313389	46	13.24	10	2.86	40	12.02	"PREDICTED: Sus scrofa abhydrolase domain-containing protein FAM108A-like (LOC100524666), mRNA /cds=p(352,1284) /gb=XM_003122999 /gi=311248274 /ug=Ssc.2484 /len=1526"	-	GO:0003824//catalytic activity	-	gi|311248275|ref|XP_003123047.1|/1.89868e-150/PREDICTED: abhydrolase domain-containing protein FAM108A-like [Sus scrofa]
gnl|UG|Ssc#S58313036	16	4.61	2	0.57	11	3.31	"PREDICTED: Sus scrofa latrophilin-1-like (LOC100514215), mRNA /cds=p(1,4206) /gb=XM_003123365 /gi=311248988 /ug=Ssc.94809 /len=4206"	GO:0031224//intrinsic to membrane;GO:0044430//cytoskeletal part	GO:0004888//transmembrane receptor activity;GO:0030246//carbohydrate binding	GO:0007417//central nervous system development;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0006887//exocytosis	gi|311248989|ref|XP_003123413.1|/0/PREDICTED: latrophilin-1-like [Sus scrofa]
gnl|UG|Ssc#S42609559	6	1.73	2	0.57	0	0	"Sus scrofa TGF-beta activated kinase 1b (TAK1b) mRNA, complete cds /cds=p(1,1821) /gb=EU399819 /gi=166079190 /ug=Ssc.10311 /len=1821"	GO:0031090//organelle membrane;GO:0000123//histone acetyltransferase complex;GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0004712//protein serine/threonine/tyrosine kinase activity;GO:0032559;GO:0004702//receptor signaling protein serine/threonine kinase activity	GO:0006915//apoptosis;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0002369//T cell cytokine production;GO:0051091//positive regulation of transcription factor activity;GO:0050851//antigen receptor-mediated signaling pathway;GO:0043406//positive regulation of MAP kinase activity;GO:0050863//regulation of T cell activation;GO:0001819//positive regulation of cytokine production;GO:0001838//embryonic epithelial tube formation;GO:0016573//histone acetylation;GO:0002224//toll-like receptor signaling pathway;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0043410//positive regulation of MAPKKK cascade	gi|166796053|ref|NP_001107752.1|/0/mitogen-activated protein kinase kinase kinase 7 [Sus scrofa]
gnl|UG|Ssc#S55327390	5	1.44	0	0	0	0	"Sus scrofa mRNA, clone:MLTL10091F08, expressed in longissimus /gb=AK347259 /gi=288576664 /ug=Ssc.37588 /len=2718"	GO:0030017//sarcomere	GO:0016740//transferase activity;GO:0008092//cytoskeletal protein binding	GO:0009888//tissue development;GO:0030239//myofibril assembly;GO:0050896//response to stimulus;GO:0048513//organ development;GO:0065007//biological regulation;GO:0008152//metabolic process	gi|297465038|ref|XP_002703630.1|/0/PREDICTED: titin [Bos taurus]
gnl|UG|Ssc#S58314241	75	21.59	31	8.86	39	11.72	"PREDICTED: Sus scrofa serine/threonine-protein kinase Nek6-like (LOC100514624), mRNA /cds=p(1,1473) /gb=XM_003122163 /gi=311246441 /ug=Ssc.5362 /len=2948"	GO:0043231//intracellular membrane-bounded organelle	GO:0008092//cytoskeletal protein binding;GO:0004672//protein kinase activity;GO:0019900//kinase binding;GO:0046872//metal ion binding;GO:0060089;GO:0032559	GO:0012501//programmed cell death;GO:0006468//protein phosphorylation;GO:0007088//regulation of mitosis;GO:0007249//I-kappaB kinase/NF-kappaB cascade	gi|311246442|ref|XP_003122211.1|/0/PREDICTED: serine/threonine-protein kinase Nek6-like [Sus scrofa]
gnl|UG|Ssc#S31117518	42	12.09	24	6.86	78	23.44	"1539566 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY421356 /gi=87222659 /ug=Ssc.89245 /len=614"	GO:0030427//site of polarized growth;GO:0043231//intracellular membrane-bounded organelle;GO:0044297//cell body;GO:0005578//proteinaceous extracellular matrix;GO:0042995//cell projection	GO:0070011;GO:0005102//receptor binding;GO:0043169//cation binding;GO:0004866//endopeptidase inhibitor activity	GO:0032486//Rap protein signal transduction;GO:0045597//positive regulation of cell differentiation;GO:0046578//regulation of Ras protein signal transduction;GO:0030162//regulation of proteolysis;GO:0010033//response to organic substance;GO:0008283//cell proliferation;GO:0046058//cAMP metabolic process;GO:0050767//regulation of neurogenesis;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0048232//male gamete generation;GO:0007346//regulation of mitotic cell cycle;GO:0031281;GO:0010466//negative regulation of peptidase activity	gi|296476071|gb|DAA18186.1|/1.26408e-102/metalloproteinase inhibitor 2 precursor [Bos taurus]
gnl|UG|Ssc#S55320270	0	0	0	0	0	0	"Sus scrofa mRNA, clone:THY010062G06, expressed in thymus /gb=AK351693 /gi=288784602 /ug=Ssc.78900 /len=1437"	GO:0000346//transcription export complex	GO:0003676//nucleic acid binding	GO:0006406//mRNA export from nucleus;GO:0006396//RNA processing	gi|149751113|ref|XP_001499697.1|/6.08854e-171/PREDICTED: similar to WD repeat domain 58 [Equus caballus]
gnl|UG|Ssc#S40410309	6	1.73	7	2	16	4.81	"rplac_13106.y1 pla Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW504916 /gi=182864237 /ug=Ssc.92265 /len=628"	GO:0044424//intracellular part	GO:0005488//binding	GO:0023052//signaling	gi|301755312|ref|XP_002913489.1|/3.11567e-75/PREDICTED: muskelin-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55254268	0	0	2	0.57	0	0	"FS675242 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010060H03 5', mRNA sequence /clone=KDN010060H03 /clone_end=5' /gb=FS675242 /gi=288251242 /ug=Ssc.31005 /len=901"	GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|301775665|ref|XP_002923250.1|/3.62619e-152/PREDICTED: cirhin-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46878867	334	96.16	517	147.78	477	143.35	"PREDICTED: Sus scrofa zinc finger protein 36, C3H1 type-like 1-like (LOC100152130), mRNA /cds=p(122,1138) /gb=XM_001924308 /gi=311261257 /ug=Ssc.20273 /len=3034"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0003723//RNA binding;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0006412//translation;GO:0000956//nuclear-transcribed mRNA catabolic process;GO:0030154//cell differentiation	"gi|194038465|ref|XP_001924343.1|/5.28163e-148/PREDICTED: zinc finger protein 36, C3H1 type-like 1-like [Sus scrofa]"
gnl|UG|Ssc#S58314933	26	7.49	38	10.86	4	1.2	"PREDICTED: Sus scrofa BCL2/adenovirus E1B 19 kDa protein-interacting protein 2-like (LOC100521534), mRNA /cds=p(1,1242) /gb=XM_003121469 /gi=311244633 /ug=Ssc.71097 /len=1299"	GO:0012505//endomembrane system;GO:0043227//membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0008047//enzyme activator activity	GO:0045597//positive regulation of cell differentiation;GO:0043066//negative regulation of apoptosis	gi|311244634|ref|XP_003121517.1|/0/PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein 2-like [Sus scrofa]
gnl|UG|Ssc#S20938676	422	121.5	61	17.44	535	160.78	"AJ650399 CSEQRAN19 Sus scrofa cDNA clone C0003275_E01, mRNA sequence /clone=C0003275_E01 /gb=AJ650399 /gi=49327244 /ug=Ssc.85653 /len=500"	-	GO:0005488//binding	-	gi|73983728|ref|XP_540877.2|/1.88689e-48/PREDICTED: similar to CG1241-PA [Canis familiaris]
gnl|UG|Ssc#S35169876	129	37.14	75	21.44	185	55.6	"Sus scrofa mRNA, clone:LNG010102B02, expressed in lung /gb=AK232198 /gi=115549963 /ug=Ssc.6281 /len=984"	GO:0005770//late endosome	GO:0005515//protein binding	GO:0016192//vesicle-mediated transport	gi|77736047|ref|NP_001029722.1|/4.69505e-79/charged multivesicular body protein 2a [Bos taurus]
gnl|UG|Ssc#S35167028	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:LVRM10050F02, expressed in liver /gb=AK232916 /gi=115552711 /ug=Ssc.44714 /len=1272"	-	-	-	gi|296490016|gb|DAA32129.1|/1.4654e-89/hypothetical protein LOC535402 [Bos taurus]
gnl|UG|Ssc#S17527074	0	0	4	1.14	0	0	"BX676032 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0036.e.07 3prim, mRNA sequence /clone=scac0036.e.07 /clone_end=3' /gb=BX676032 /gi=90236171 /ug=Ssc.94204 /len=879"	GO:0043231//intracellular membrane-bounded organelle	GO:0004871//signal transducer activity;GO:0005488//binding	GO:0023052//signaling	gi|296484052|gb|DAA26167.1|/2.852e-67/proline-rich nuclear receptor coactivator 1 [Bos taurus]
gnl|UG|Ssc#S58301786	33	9.5	119	34.02	56	16.83	"PREDICTED: Sus scrofa DENN domain-containing protein 2A-like (LOC100514997), mRNA /cds=p(1,3456) /gb=XM_003134612 /gi=311275269 /ug=Ssc.79049 /len=3773"	-	-	-	-
gnl|UG|Ssc#S58301871	2	0.58	3	0.86	0	0	"PREDICTED: Sus scrofa limb region 1 protein homolog (LOC100511541), mRNA /cds=p(171,1172) /gb=XM_003134524 /gi=311275094 /ug=Ssc.11370 /len=1212"	GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity	GO:0030326//embryonic limb morphogenesis;GO:0023052//signaling	gi|311275095|ref|XP_003134572.1|/3.90865e-169/PREDICTED: limb region 1 protein homolog [Sus scrofa]
gnl|UG|Ssc#S55882007	2	0.58	4	1.14	0	0	"Sus scrofa PHD finger protein 6 (PHF6), mRNA /cds=p(165,1265) /gb=NM_001185103 /gi=297515462 /ug=Ssc.44573 /len=2531"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding	"GO:0006351//transcription, DNA-dependent"	gi|14017863|dbj|BAB47452.1|/0/KIAA1823 protein [Homo sapiens]
gnl|UG|Ssc#S58311965	6	1.73	0	0	8	2.4	"PREDICTED: Sus scrofa rab5 GDP/GTP exchange factor-like (LOC100516185), mRNA /cds=p(1,1890) /gb=XM_003124435 /gi=311251177 /ug=Ssc.55552 /len=3963"	GO:0005768//endosome	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0016192//vesicle-mediated transport	gi|311251178|ref|XP_003124483.1|/0/PREDICTED: rab5 GDP/GTP exchange factor-like [Sus scrofa]
gnl|UG|Ssc#S58306726	11	3.17	24	6.86	20	6.01	"PREDICTED: Sus scrofa protein EMSY-like (LOC100522264), mRNA /cds=p(18,2540) /gb=XM_003129670 /gi=311263529 /ug=Ssc.39416 /len=2736"	-	-	-	gi|311263530|ref|XP_003129718.1|/0/PREDICTED: protein EMSY-like [Sus scrofa]
gnl|UG|Ssc#S35171404	6	1.73	0	0	6	1.8	"Sus scrofa mRNA, clone:OVRM10045B09, expressed in ovary /gb=AK235052 /gi=115548435 /ug=Ssc.89645 /len=2008"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	"GO:0030528//transcription regulator activity;GO:0030674//protein binding, bridging;GO:0003676//nucleic acid binding;GO:0019904//protein domain specific binding"	"GO:0032239;GO:0022402//cell cycle process;GO:0007165//signal transduction;GO:0006351//transcription, DNA-dependent"	"gi|291408909|ref|XP_002720681.1|/1.09575e-127/PREDICTED: KH domain containing, RNA binding, signal transduction associated 1 [Oryctolagus cuniculus]"
gnl|UG|Ssc#S55322567	9	2.59	18	5.15	10	3.01	"Sus scrofa mRNA, clone:DCI010068A08, expressed in dendritic cells (immature) /gb=AK344516 /gi=288782305 /ug=Ssc.28129 /len=2369"	-	-	-	"gi|73979590|ref|XP_540029.2|/0/PREDICTED: similar to CG17569-PB, isoform B [Canis familiaris]"
gnl|UG|Ssc#S58308386	0	0	0	0	5	1.5	"PREDICTED: Sus scrofa UMP-CMP kinase-like (LOC100521561), mRNA /cds=p(145,795) /gb=XM_003128011 /gi=311259357 /ug=Ssc.24276 /len=1899"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0016776//phosphotransferase activity, phosphate group as acceptor;GO:0019201//nucleotide kinase activity;GO:0032559;GO:0019206//nucleoside kinase activity"	GO:0009123;GO:0006221//pyrimidine nucleotide biosynthetic process;GO:0006796//phosphate metabolic process	gi|311259358|ref|XP_003128059.1|/3.18952e-121/PREDICTED: UMP-CMP kinase-like [Sus scrofa]
gnl|UG|Ssc#S58312765	11	3.17	2	0.57	7	2.1	"PREDICTED: Sus scrofa mitogen-activated protein kinase 9 (MAPK9), mRNA /cds=p(1,1275) /gb=XM_003123628 /gi=311249536 /ug=Ssc.3941 /len=4346"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0016505//apoptotic protease activator activity;GO:0032559;GO:0019901//protein kinase binding;GO:0016909//SAP kinase activity	"GO:0070555//response to interleukin-1;GO:0001932//regulation of protein phosphorylation;GO:0010557;GO:0010243//response to organic nitrogen;GO:0016567//protein ubiquitination;GO:0010742//macrophage derived foam cell differentiation;GO:0008624//induction of apoptosis by extracellular signals;GO:0031328//positive regulation of cellular biosynthetic process;GO:0010952//positive regulation of peptidase activity;GO:0000904//cell morphogenesis involved in differentiation;GO:0009411//response to UV;GO:0032305;GO:0043408//regulation of MAPKKK cascade;GO:0009605//response to external stimulus;GO:0001516//prostaglandin biosynthetic process;GO:0001819//positive regulation of cytokine production;GO:0007399//nervous system development;GO:0006605//protein targeting;GO:0010038//response to metal ion;GO:0008637//apoptotic mitochondrial changes;GO:0007166//cell surface receptor linked signaling pathway;GO:0002224//toll-like receptor signaling pathway;GO:0030030//cell projection organization;GO:0034612//response to tumor necrosis factor;GO:0032496//response to lipopolysaccharide;GO:0006355//regulation of transcription, DNA-dependent"	gi|311249537|ref|XP_003123676.1|/0/PREDICTED: mitogen-activated protein kinase 9 [Sus scrofa]
gnl|UG|Ssc#S35173515	5	1.44	0	0	0	0	"Sus scrofa mRNA, clone:AMP010051F05, expressed in alveolar macrophage /gb=AK230839 /gi=115546320 /ug=Ssc.42913 /len=2981"	GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0005543//phospholipid binding	GO:0044238//primary metabolic process;GO:0006796//phosphate metabolic process;GO:0006810//transport	gi|311253660|ref|XP_001927203.2|/0/PREDICTED: LOW QUALITY PROTEIN: copine-3 [Sus scrofa]
gnl|UG|Ssc#S58311620	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa isoleucyl-tRNA synthetase (IARS), mRNA /cds=p(135,3701) /gb=XM_003124790 /gi=311251893 /ug=Ssc.34451 /len=4594"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0046914//transition metal ion binding;GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|311251894|ref|XP_003124838.1|/0/PREDICTED: isoleucyl-tRNA synthetase, cytoplasmic-like [Sus scrofa]"
gnl|UG|Ssc#S35164882	0	0	6	1.72	0	0	"Sus scrofa mRNA, clone:LVRM10196F12, expressed in liver /gb=AK233656 /gi=115554844 /ug=Ssc.26338 /len=1673"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0004690//cyclic nucleotide-dependent protein kinase activity;GO:0032559;GO:0019887//protein kinase regulator activity;GO:0019900//kinase binding	GO:0033674//positive regulation of kinase activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0051259//protein oligomerization;GO:0006096//glycolysis;GO:0022402//cell cycle process;GO:0048232//male gamete generation;GO:0006464//protein modification process;GO:0019217//regulation of fatty acid metabolic process	gi|48675947|ref|NP_001001642.1|/0/5'-AMP-activated protein kinase subunit gamma-1 [Sus scrofa]
gnl|UG|Ssc#S29981614	21	6.05	5	1.43	7	2.1	"PDUts1175D04 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1175D04 5' similar to homologue to gb|AY550048.1| Sus scrofa Bax inhibitor-1 mRNA, partial cds, mRNA sequence /clone=PDUts1175D04 /clone_end=5' /gb=CV878272 /gi=84132232 /ug=Ssc.95200 /len=384"	GO:0031224//intrinsic to membrane	-	GO:0006915//apoptosis	gi|149714293|ref|XP_001504273.1|/1.86925e-21/PREDICTED: similar to testis enhanced gene transcript (BAX inhibitor 1) [Equus caballus]
gnl|UG|Ssc#S58310504	25	7.2	8	2.29	7	2.1	"PREDICTED: Sus scrofa sorting nexin-7-like (LOC100515025), mRNA /cds=p(1,1515) /gb=XM_003125898 /gi=311254745 /ug=Ssc.10086 /len=1871"	GO:0012506//vesicle membrane	GO:0005543//phospholipid binding	GO:0006810//transport;GO:0009987//cellular process	gi|311254746|ref|XP_003125946.1|/0/PREDICTED: sorting nexin-7-like [Sus scrofa]
gnl|UG|Ssc#S35171654	5	1.44	10	2.86	2	0.6	"Sus scrofa mRNA, clone:OVRM10035F02, expressed in ovary /gb=AK234950 /gi=115548181 /ug=Ssc.4961 /len=994"	GO:0005667//transcription factor complex	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0016741;GO:0004468//lysine N-acetyltransferase activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	"GO:0006629//lipid metabolic process;GO:0051099//positive regulation of binding;GO:0032501//multicellular organismal process;GO:0030855//epithelial cell differentiation;GO:0006351//transcription, DNA-dependent"	gi|73967496|ref|XP_537793.2|/1.7398e-81/PREDICTED: similar to endothelial differentiation-related factor 1 isoform alpha [Canis familiaris]
gnl|UG|Ssc#S23212484	11	3.17	0	0	10	3.01	"Sus scrofa clone Clu_2249.scr.msk.p1.Contig1, mRNA sequence /gb=AY609637 /gi=52352717 /ug=Ssc.82965 /len=1702"	GO:0044421//extracellular region part	-	GO:0002762//negative regulation of myeloid leukocyte differentiation;GO:0008283//cell proliferation;GO:0001503//ossification	gi|118151364|ref|NP_001071618.1|/0/leucine-rich repeat-containing protein 17 [Bos taurus]
gnl|UG|Ssc#S46878974	633	182.24	399	114.05	363	109.09	"PREDICTED: Sus scrofa calmodulin (LOC100154056), mRNA /cds=p(46,495) /gb=XM_001928187 /gi=311261441 /ug=Ssc.11516 /len=4322"	GO:0031981//nuclear lumen;GO:0042598//vesicular fraction;GO:0005815//microtubule organizing center;GO:0005819//spindle;GO:0008287//protein serine/threonine phosphatase complex;GO:0031674//I band;GO:0016020//membrane	"GO:0047485//protein N-terminus binding;GO:0046872//metal ion binding;GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0019900//kinase binding;GO:0008092//cytoskeletal protein binding;GO:0016247//channel regulator activity;GO:0016791//phosphatase activity"	GO:0001775//cell activation;GO:0014808//release of sequestered calcium ion into cytosol by sarcoplasmic reticulum;GO:0003012//muscle system process;GO:0019318//hexose metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0032414//positive regulation of ion transmembrane transporter activity;GO:0051899//membrane depolarization;GO:0006887//exocytosis;GO:0022402//cell cycle process;GO:0010863//positive regulation of phospholipase C activity;GO:0051969;GO:0005977//glycogen metabolic process;GO:0006807//nitrogen compound metabolic process;GO:0006796//phosphate metabolic process;GO:0006605//protein targeting;GO:0007599//hemostasis;GO:0000910//cytokinesis;GO:0010038//response to metal ion;GO:0007267//cell-cell signaling;GO:0048747//muscle fiber development;GO:0032768;GO:0032413//negative regulation of ion transmembrane transporter activity;GO:0051099//positive regulation of binding	gi|109102865|ref|XP_001113485.1|/1.71667e-78/PREDICTED: calmodulin-like isoform 4 [Macaca mulatta]
gnl|UG|Ssc#S20937935	0	0	0	0	0	0	"AJ649658 CSEQRAN19 Sus scrofa cDNA clone C0003273_B13, mRNA sequence /clone=C0003273_B13 /gb=AJ649658 /gi=49326503 /ug=Ssc.85615 /len=449"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016627//oxidoreductase activity, acting on the CH-CH group of donors;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0000166//nucleotide binding"	GO:0006778//porphyrin metabolic process;GO:0055080//cation homeostasis;GO:0009237//siderophore metabolic process;GO:0009062//fatty acid catabolic process	gi|157816997|ref|NP_001099943.1|/2.55615e-71/3-hydroxybutyrate dehydrogenase type 2 [Rattus norvegicus] 
gnl|UG|Ssc#S35171564	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:ITT010079B11, expressed in intestine /gb=AK231485 /gi=115548271 /ug=Ssc.7197 /len=2538"	GO:0043231//intracellular membrane-bounded organelle;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	"GO:0046872//metal ion binding;GO:0005496//steroid binding;GO:0016879//ligase activity, forming carbon-nitrogen bonds;GO:0032559"	GO:0006220//pyrimidine nucleotide metabolic process;GO:0009064//glutamine family amino acid metabolic process	gi|194227700|ref|XP_001916005.1|/0/PREDICTED: similar to CTP synthase II [Equus caballus]
gnl|UG|Ssc#S50198790	0	0	0	0	0	0	"susfleck_FC_N_54_F05 SUSFLECK Fat Cell Normalized Sus scrofa cDNA clone 54_F05, mRNA sequence /clone=54_F05 /gb=FD630626 /gi=220996192 /ug=Ssc.82166 /len=765"	GO:0044424//intracellular part	GO:0030695//GTPase regulator activity;GO:0004672//protein kinase activity;GO:0032559	GO:0000187//activation of MAPK activity	gi|300798430|ref|NP_001178057.1|/3.45512e-131/mitogen-activated protein kinase kinase kinase kinase 5 [Bos taurus]
gnl|UG|Ssc#S55322625	19	5.47	3	0.86	7	2.1	"Sus scrofa mRNA, clone:DCI010057H08, expressed in dendritic cells (immature) /gb=AK344458 /gi=288782247 /ug=Ssc.12259 /len=2030"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0003723//RNA binding;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	gi|149715335|ref|XP_001488941.1|/0/PREDICTED: methionyl-tRNA synthetase [Equus caballus]
gnl|UG|Ssc#S58303188	30	8.64	34	9.72	26	7.81	"PREDICTED: Sus scrofa Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) (PAF1), mRNA /cds=p(215,1813) /gb=XM_003133204 /gi=311271952 /ug=Ssc.24777 /len=2542"	GO:0008023//transcription elongation factor complex	GO:0005488//binding	GO:0006513//protein monoubiquitination;GO:0016574//histone ubiquitination;GO:0010467//gene expression	gi|311271953|ref|XP_003133252.1|/0/PREDICTED: RNA polymerase II-associated factor 1 homolog [Sus scrofa]
gnl|UG|Ssc#S35165626	2	0.58	23	6.57	0	0	"Sus scrofa mRNA, clone:LVRM10119H05, expressed in liver /gb=AK233309 /gi=115554100 /ug=Ssc.49644 /len=2354"	GO:0016323//basolateral plasma membrane;GO:0005768//endosome;GO:0012505//endomembrane system;GO:0016023//cytoplasmic membrane-bounded vesicle	GO:0005506//iron ion binding	GO:0000041//transition metal ion transport;GO:0006875//cellular metal ion homeostasis	gi|189232884|emb|CAQ34904.1|/0/transferrin [Sus scrofa]
gnl|UG|Ssc#S6090863	99	28.5	29	8.29	49	14.73	"Sus scrofa T2C16 olfactory receptor mRNA, partial cds /cds=p(1,528) /gb=AF042024 /gi=3273648 /ug=Ssc.94422 /len=528"	-	-	-	gi|3273649|gb|AAC24800.1|/2.41165e-92/olfactory receptor [Sus scrofa]
gnl|UG|Ssc#S58308694	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100521629 (LOC100521629), mRNA /cds=p(155,2869) /gb=XM_003127703 /gi=311258725 /ug=Ssc.6682 /len=3020"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0005488//binding	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	"gi|148698041|gb|EDL29988.1|/4.40685e-62/serine/arginine repetitive matrix 1, isoform CRA_d [Mus musculus]"
gnl|UG|Ssc#S55326331	6	1.73	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10125G10, expressed in ovary /gb=AK348320 /gi=288778495 /ug=Ssc.5122 /len=2124"	-	GO:0004672//protein kinase activity;GO:0032559	GO:0051707//response to other organism;GO:0007126//meiosis;GO:0006796//phosphate metabolic process;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0043066//negative regulation of apoptosis;GO:0006914//autophagy;GO:0006464//protein modification process	gi|296470770|gb|DAA12885.1|/5.54098e-178/pim-2 oncogene [Bos taurus]
gnl|UG|Ssc#S31110502	6	1.73	0	0	0	0	"1520372 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY414340 /gi=87215643 /ug=Ssc.89149 /len=656"	-	-	-	-
gnl|UG|Ssc#S46877861	6	1.73	3	0.86	6	1.8	"PREDICTED: Sus scrofa spartin-like (LOC100152415), mRNA /cds=p(1,2109) /gb=XM_001926478 /gi=311266138 /ug=Ssc.23990 /len=2109"	GO:0044424//intracellular part	GO:0019899//enzyme binding	GO:0009987//cellular process	gi|311266139|ref|XP_001926513.2|/0/PREDICTED: spartin-like [Sus scrofa]
gnl|UG|Ssc#S58304576	90	25.91	13	3.72	50	15.03	"PREDICTED: Sus scrofa PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) (PRPF8), mRNA /cds=p(1,6564) /gb=XM_003131826 /gi=311268060 /ug=Ssc.38577 /len=6743"	GO:0005681//spliceosomal complex;GO:0030532//small nuclear ribonucleoprotein complex;GO:0016604//nuclear body	GO:0003676//nucleic acid binding	GO:0000377;GO:0050953//sensory perception of light stimulus	gi|311268061|ref|XP_003131874.1|/0/PREDICTED: pre-mRNA-processing-splicing factor 8-like [Sus scrofa]
gnl|UG|Ssc#S58309428	3	0.86	2	0.57	5	1.5	"PREDICTED: Sus scrofa RING finger and SPRY domain-containing protein 1-like (LOC100515835), mRNA /cds=p(156,1886) /gb=XM_003126970 /gi=311257228 /ug=Ssc.46816 /len=2108"	-	GO:0046914//transition metal ion binding	-	gi|311257229|ref|XP_003127018.1|/0/PREDICTED: RING finger and SPRY domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46877595	63	18.14	32	9.15	56	16.83	"PREDICTED: Sus scrofa male-specific lethal 2 homolog (Drosophila) (MSL2), mRNA /cds=p(49,1782) /gb=XM_001927762 /gi=311269431 /ug=Ssc.37267 /len=4078"	GO:0000123//histone acetyltransferase complex	GO:0046914//transition metal ion binding	GO:0043967//histone H4 acetylation	gi|301778887|ref|XP_002924864.1|/0/PREDICTED: male-specific lethal 2 homolog [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58306792	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa nuclear mitotic apparatus protein 1-like (LOC100526064), mRNA /cds=p(121,6447) /gb=XM_003129619 /gi=311263396 /ug=Ssc.28400 /len=7137"	GO:0044444//cytoplasmic part;GO:0005819//spindle;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0007067//mitosis	gi|311263397|ref|XP_003129667.1|/0/PREDICTED: nuclear mitotic apparatus protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58304318	5	1.44	2	0.57	2	0.6	"PREDICTED: Sus scrofa sodium bicarbonate cotransporter 3-like (LOC100524044), mRNA /cds=p(1,3630) /gb=XM_003132080 /gi=311268606 /ug=Ssc.33418 /len=3630"	GO:0044459//plasma membrane part;GO:0031982//vesicle;GO:0005902//microvillus;GO:0031224//intrinsic to membrane;GO:0044424//intracellular part	GO:0015081//sodium ion transmembrane transporter activity;GO:0005488//binding;GO:0015301//anion:anion antiporter activity	GO:0015698//inorganic anion transport;GO:0030001//metal ion transport	gi|311268607|ref|XP_003132128.1|/0/PREDICTED: LOW QUALITY PROTEIN: sodium bicarbonate cotransporter 3-like [Sus scrofa]
gnl|UG|Ssc#S21554882	6	1.73	9	2.57	6	1.8	"UMC-p6mm3-019-h04 6mm ovarian follicle p6mm Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO947461 /gi=51314220 /ug=Ssc.86413 /len=380"	-	-	-	-
gnl|UG|Ssc#S35171882	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10033C09, expressed in ovary /gb=AK234930 /gi=115547953 /ug=Ssc.11458 /len=1662"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0031090//organelle membrane;GO:0031224//intrinsic to membrane	-	GO:0006694//steroid biosynthetic process	gi|73964320|ref|XP_854777.1|/1.01149e-68/PREDICTED: similar to Probable ergosterol biosynthetic protein 28 [Canis familiaris]
gnl|UG|Ssc#S46879302	1214	349.52	2660	760.36	1207	362.74	"PREDICTED: Sus scrofa unactive progesterone receptor, 23 kD (LOC100155956), mRNA /cds=p(1,1119) /gb=XM_001929413 /gi=311255711 /ug=Ssc.19975 /len=2271"	GO:0044427;GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0003964//RNA-directed DNA polymerase activity;GO:0016860//intramolecular oxidoreductase activity;GO:0005515//protein binding	GO:0006693//prostaglandin metabolic process;GO:0042026//protein refolding;GO:0006259//DNA metabolic process;GO:0009058//biosynthetic process;GO:0008544//epidermis development;GO:0005977//glycogen metabolic process;GO:0031958	gi|311255712|ref|XP_001929448.2|/0/PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC100155956 [Sus scrofa]
gnl|UG|Ssc#S58311153	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa cysteine-rich motor neuron 1 protein-like (LOC100525917), mRNA /cds=p(1,2199) /gb=XM_003125248 /gi=311252844 /ug=Ssc.85998 /len=2199"	GO:0044464//cell part	GO:0004866//endopeptidase inhibitor activity;GO:0019838//growth factor binding	GO:0016049//cell growth;GO:0010466//negative regulation of peptidase activity;GO:0050794//regulation of cellular process	gi|311252845|ref|XP_003125296.1|/0/PREDICTED: cysteine-rich motor neuron 1 protein-like [Sus scrofa]
gnl|UG|Ssc#S24610299	5	1.44	13	3.72	3	0.9	"CR940178 Sus scrofa cDNA library (scaj) Sus scrofa cDNA clone scaj0018.n.09 5prim, mRNA sequence /clone=scaj0018.n.09 /clone_end=5' /gb=CR940178 /gi=62936527 /ug=Ssc.54091 /len=870"	-	-	-	-
gnl|UG|Ssc#S52128909	4	1.15	3	0.86	5	1.5	"Sus scrofa lysine (K)-specific demethylase 2A (KDM2A), mRNA /cds=p(51,3539) /gb=NM_001160090 /gi=229892821 /ug=Ssc.24207 /len=6122"	GO:0031981//nuclear lumen	"GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0016706//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	"GO:0070076//histone lysine demethylation;GO:0006351//transcription, DNA-dependent"	gi|229892822|ref|NP_001153562.1|/0/lysine-specific demethylase 2A [Sus scrofa]
gnl|UG|Ssc#S58303013	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa testis-expressed sequence 15 protein-like (LOC100513440), mRNA /cds=p(1,9975) /gb=XM_003133389 /gi=311272406 /ug=Ssc.88038 /len=9975"	-	-	-	gi|311272407|ref|XP_003133437.1|/0/PREDICTED: testis-expressed sequence 15 protein-like [Sus scrofa]
gnl|UG|Ssc#S20936516	10	2.88	8	2.29	5	1.5	"AJ648239 CSEQRAN19 Sus scrofa cDNA clone C0003264_A21, mRNA sequence /clone=C0003264_A21 /gb=AJ648239 /gi=49325084 /ug=Ssc.74057 /len=456"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|213688373|ref|NP_001093974.1|/1.71431e-43/growth arrest and DNA damage-inducible proteins-interacting protein 1 [Rattus norvegicus]
gnl|UG|Ssc#S58307452	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa probable phospholipid-transporting ATPase IA-like (LOC100515393), mRNA /cds=p(104,2431) /gb=XM_003128945 /gi=311262054 /ug=Ssc.39544 /len=2431"	GO:0031224//intrinsic to membrane;GO:0030667//secretory granule membrane	"GO:0042625//ATPase activity, coupled to transmembrane movement of ions;GO:0046872//metal ion binding;GO:0005548//phospholipid transporter activity;GO:0008324//cation transmembrane transporter activity;GO:0032559"	GO:0009206;GO:0006811//ion transport;GO:0006869//lipid transport;GO:0009207	gi|311262055|ref|XP_003128993.1|/0/PREDICTED: probable phospholipid-transporting ATPase IA-like [Sus scrofa]
gnl|UG|Ssc#S58313725	0	0	0	0	0	0	"PREDICTED: Sus scrofa transmembrane protein 132A (TMEM132A), mRNA /cds=p(129,3203) /gb=XM_003122671 /gi=311247596 /ug=Ssc.42578 /len=3450"	GO:0012505//endomembrane system;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0007417//central nervous system development;GO:0012501//programmed cell death	gi|311247597|ref|XP_003122719.1|/0/PREDICTED: transmembrane protein 132A-like [Sus scrofa]
gnl|UG|Ssc#S39771551	54	15.55	136	38.88	56	16.83	"rpbfe0131_f13.y1 bfe Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV866829 /gi=178563709 /ug=Ssc.64591 /len=563"	-	-	-	-
gnl|UG|Ssc#S58303119	80	23.03	36	10.29	97	29.15	"PREDICTED: Sus scrofa activated RNA polymerase II transcriptional coactivator p15-like (LOC100512195), mRNA /cds=p(56,439) /gb=XM_003133276 /gi=311272154 /ug=Ssc.1222 /len=3398"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003712//transcription cofactor activity;GO:0043566//structure-specific DNA binding	"GO:0006355//regulation of transcription, DNA-dependent"	gi|73954359|ref|XP_536425.2|/5.99078e-47/PREDICTED: similar to Activated RNA polymerase II transcriptional coactivator p15 (Positive cofactor 4) (PC4) (p14) [Canis familiaris]
gnl|UG|Ssc#S58309651	6	1.73	4	1.14	0	0	"PREDICTED: Sus scrofa liprin-alpha-2-like (LOC100512281), mRNA /cds=p(1,3963) /gb=XM_003126749 /gi=311256763 /ug=Ssc.80188 /len=3963"	GO:0005624//membrane fraction;GO:0044424//intracellular part	GO:0005488//binding	GO:0031589//cell-substrate adhesion	gi|311256764|ref|XP_003126797.1|/0/PREDICTED: liprin-alpha-2-like [Sus scrofa]
gnl|UG|Ssc#S38982512	4	1.15	0	0	0	0	"Sus scrofa eukaryotic translation initiation factor 4A isoform 1 (EIF4A1) mRNA, complete cds /cds=p(15,1235) /gb=DQ351283 /gi=85792231 /ug=Ssc.22034 /len=1447"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0042623//ATPase activity, coupled;GO:0008135//translation factor activity, nucleic acid binding;GO:0032559"	"GO:0006412//translation;GO:0009887//organ morphogenesis;GO:0009207;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	"gi|224036359|pdb|3EIQ|A/0/Chain A, Crystal Structure Of Pdcd4-Eif4a"
gnl|UG|Ssc#S55320762	3	0.86	0	0	4	1.2	"Sus scrofa mRNA, clone:THY010004A08, expressed in thymus /gb=AK351400 /gi=288784110 /ug=Ssc.45738 /len=1271"	GO:0043231//intracellular membrane-bounded organelle	GO:0030295//protein kinase activator activity;GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0042802//identical protein binding;GO:0032559	GO:0032989;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0006915//apoptosis;GO:0045860//positive regulation of protein kinase activity;GO:0035556//intracellular signal transduction	gi|86826447|gb|AAI12754.1|/0/STK4 protein [Bos taurus]
gnl|UG|Ssc#S58306036	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa ATP-dependent RNA helicase A-like (LOC100514066), mRNA /cds=p(1,1206) /gb=XM_003130363 /gi=311264940 /ug=Ssc.55468 /len=1206"	GO:0005815//microtubule organizing center;GO:0043234//protein complex;GO:0031981//nuclear lumen	"GO:0003678//DNA helicase activity;GO:0003723//RNA binding;GO:0042623//ATPase activity, coupled;GO:0003724//RNA helicase activity;GO:0032559"	GO:0000377;GO:0009408//response to heat;GO:0048255//mRNA stabilization	gi|311264941|ref|XP_003130411.1|/0/PREDICTED: ATP-dependent RNA helicase A-like [Sus scrofa]
gnl|UG|Ssc#S58313068	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa ribonuclease H2 subunit A-like (LOC100523170), mRNA /cds=p(254,1159) /gb=XM_003123332 /gi=311248922 /ug=Ssc.19088 /len=1235"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	"GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0016891//endoribonuclease activity, producing 5'-phosphomonoesters"	GO:0006259//DNA metabolic process;GO:0016070//RNA metabolic process	gi|311248923|ref|XP_003123380.1|/4.1237e-174/PREDICTED: ribonuclease H2 subunit A-like [Sus scrofa]
gnl|UG|Ssc#S46875808	16	4.61	3	0.86	6	1.8	"PREDICTED: Sus scrofa phosphate-regulating neutral endopeptidase-like (LOC100154258), mRNA /cds=p(1,2250) /gb=XM_001926767 /gi=311276034 /ug=Ssc.85161 /len=2250"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016021//integral to membrane	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0008238//exopeptidase activity	GO:0048731;GO:0019538//protein metabolic process;GO:0009888//tissue development;GO:0043412;GO:0007154//cell communication	gi|194044816|ref|XP_001926802.1|/0/PREDICTED: phosphate-regulating neutral endopeptidase-like [Sus scrofa]
gnl|UG|Ssc#S46876728	9	2.59	6	1.72	3	0.9	"PREDICTED: Sus scrofa CAP-GLY domain containing linker protein 1 (CLIP1), mRNA /cds=p(140,4420) /gb=XM_001928981 /gi=311270586 /ug=Ssc.21890 /len=6453"	"GO:0043231//intracellular membrane-bounded organelle;GO:0005874//microtubule;GO:0000775//chromosome, centromeric region;GO:0044444//cytoplasmic part"	GO:0008017//microtubule binding;GO:0046914//transition metal ion binding;GO:0042802//identical protein binding	GO:0031112;GO:0007067//mitosis	gi|311270587|ref|XP_001929016.2|/0/PREDICTED: CAP-Gly domain-containing linker protein 1 [Sus scrofa]
gnl|UG|Ssc#S58305248	5	1.44	6	1.72	4	1.2	"PREDICTED: Sus scrofa n-sulphoglucosamine sulphohydrolase-like (LOC100525606), mRNA /cds=p(12,1550) /gb=XM_003131137 /gi=311266672 /ug=Ssc.5027 /len=2828"	GO:0000323//lytic vacuole	"GO:0043169//cation binding;GO:0016788//hydrolase activity, acting on ester bonds;GO:0016826"	GO:0006029//proteoglycan metabolic process	gi|311266673|ref|XP_003131185.1|/0/PREDICTED: LOW QUALITY PROTEIN: n-sulphoglucosamine sulphohydrolase-like [Sus scrofa]
gnl|UG|Ssc#S58303627	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa Down syndrome critical region protein 3-like (LOC100514324), mRNA /cds=p(82,681) /gb=XM_003132768 /gi=311270222 /ug=Ssc.5989 /len=4735"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle	-	GO:0046907//intracellular transport	gi|311270223|ref|XP_003132816.1|/2.29482e-100/PREDICTED: Down syndrome critical region protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58308225	144	41.46	55	15.72	173	51.99	"PREDICTED: Sus scrofa thioredoxin domain-containing protein 5-like (LOC100515671), mRNA /cds=p(1,462) /gb=XM_003128175 /gi=311259704 /ug=Ssc.51870 /len=2166"	GO:0005764//lysosome;GO:0044446//intracellular organelle part;GO:0005783//endoplasmic reticulum	GO:0003824//catalytic activity	GO:0048193//Golgi vesicle transport;GO:0043066//negative regulation of apoptosis	gi|311259705|ref|XP_003128223.1|/6.66297e-86/PREDICTED: thioredoxin domain-containing protein 5-like [Sus scrofa]
gnl|UG|Ssc#S23691611	5	1.44	3	0.86	0	0	"1097670 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN102710 /gi=59775486 /ug=Ssc.54555 /len=866"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0030016//myofibril;GO:0043234//protein complex	GO:0004175//endopeptidase activity;GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0016836//hydro-lyase activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0051707//response to other organism;GO:0006007//glucose catabolic process;GO:0016049//cell growth	gi|73956732|ref|XP_859473.1|/3.2388e-62/PREDICTED: similar to Alpha enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1) (Phosphopyruvate hydratase) (C-myc promoter-binding protein) (MBP-1) (MPB-1) (Plasminogen-binding protein) isoform 10 [Canis familiaris]
gnl|UG|Ssc#S40553822	32	9.21	36	10.29	55	16.53	"rthg20_a14.y1 thg Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW640535 /gi=183074234 /ug=Ssc.64463 /len=679"	-	-	-	gi|297263619|ref|XP_002798833.1|/1.22898e-14/PREDICTED: hypothetical protein LOC100427687 [Macaca mulatta]
gnl|UG|Ssc#S18357604	0	0	2	0.57	0	0	"908727 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK453045 /gi=40800259 /ug=Ssc.6846 /len=859"	-	-	-	-
gnl|UG|Ssc#S48803428	3	0.86	2	0.57	2	0.6	"Sus scrofa remodeling and spacing factor 1 (Rsf-1) mRNA, complete cds /cds=p(9,4304) /gb=FJ236707 /gi=213688842 /ug=Ssc.10185 /len=4623"	GO:0016585//chromatin remodeling complex	GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0017111//nucleoside-triphosphatase activity	"GO:0006355//regulation of transcription, DNA-dependent;GO:0051100//negative regulation of binding;GO:0043486//histone exchange;GO:0045935"	gi|218664475|ref|NP_001136306.1|/0/remodeling and spacing factor 1 [Sus scrofa]
gnl|UG|Ssc#S19539702	0	0	0	0	3	0.9	"943126 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN155798 /gi=46170228 /ug=Ssc.11443 /len=759"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0030528//transcription regulator activity;GO:0008134//transcription factor binding;GO:0019900//kinase binding;GO:0043565//sequence-specific DNA binding;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0043168	GO:0042108//positive regulation of cytokine biosynthetic process;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0014037//Schwann cell differentiation;GO:0043434//response to peptide hormone stimulus;GO:0051091//positive regulation of transcription factor activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050851//antigen receptor-mediated signaling pathway;GO:0002062//chondrocyte differentiation;GO:0032583//regulation of gene-specific transcription;GO:0009653//anatomical structure morphogenesis;GO:0009895;GO:0014072;GO:0009411//response to UV;GO:0008544//epidermis development;GO:0043066//negative regulation of apoptosis;GO:0000302//response to reactive oxygen species;GO:0070423;GO:0032494//response to peptidoglycan;GO:0001101//response to acid;GO:0002252;GO:0009968//negative regulation of signal transduction;GO:0048545//response to steroid hormone stimulus;GO:0008283//cell proliferation;GO:0033619//membrane protein proteolysis;GO:0002224//toll-like receptor signaling pathway;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0033273//response to vitamin;GO:0034097//response to cytokine stimulus	gi|166796055|ref|NP_001107753.1|/2.78382e-16/transcription factor p65 [Sus scrofa]
gnl|UG|Ssc#S35164839	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10208B04, expressed in liver /gb=AK233699 /gi=115554887 /ug=Ssc.39025 /len=2760"	-	-	-	gi|149705693|ref|XP_001500579.1|/0/PREDICTED: similar to CG14142 CG14142-PA [Equus caballus]
gnl|UG|Ssc#S58311272	31	8.93	80	22.87	34	10.22	"PREDICTED: Sus scrofa coiled-coil domain-containing protein 104-like (LOC100513146), mRNA /cds=p(1,1335) /gb=XM_003125129 /gi=311252600 /ug=Ssc.12256 /len=1475"	-	-	-	gi|311252601|ref|XP_003125177.1|/0/PREDICTED: coiled-coil domain-containing protein 104-like [Sus scrofa]
gnl|UG|Ssc#S58313853	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa cdc42 effector protein 2-like (LOC100513778), mRNA /cds=p(411,1055) /gb=XM_003122538 /gi=311247330 /ug=Ssc.48824 /len=1794"	GO:0016020//membrane;GO:0043232	GO:0005102//receptor binding;GO:0017048//Rho GTPase binding;GO:0005099//Ras GTPase activator activity	GO:0031269//pseudopodium assembly;GO:0065008;GO:0030041//actin filament polymerization;GO:0032319//regulation of Rho GTPase activity	gi|311247331|ref|XP_003122586.1|/2.28947e-105/PREDICTED: cdc42 effector protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58305813	7	2.02	0	0	4	1.2	"PREDICTED: Sus scrofa f-box only protein 28-like (LOC100520046), mRNA /cds=p(16,1122) /gb=XM_003130584 /gi=311265392 /ug=Ssc.45304 /len=1858"	-	-	-	gi|311265393|ref|XP_003130632.1|/1.81528e-145/PREDICTED: f-box only protein 28-like [Sus scrofa]
gnl|UG|Ssc#S6002777	0	0	0	0	2	0.6	"141999 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BE234766 /gi=9019484 /ti=448047469 /ug=Ssc.79295 /len=571"	-	-	-	-
gnl|UG|Ssc#S35171698	153	44.05	42	12.01	264	79.34	"Sus scrofa mRNA, clone:TCH010047E06, expressed in trachea /gb=AK238121 /gi=115548137 /ug=Ssc.44624 /len=1217"	-	-	-	-
gnl|UG|Ssc#S45783732	0	0	0	0	3	0.9	"Sus scrofa non-receptor type protein tyrosine phosphatase SHP2 (PTPN11) mRNA, partial cds /cds=p(1,1723) /gb=EU753190 /gi=190589915 /ug=Ssc.22794 /len=1723"	GO:0032991//macromolecular complex;GO:0005626//insoluble fraction;GO:0032432//actin filament bundle;GO:0043231//intracellular membrane-bounded organelle;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0051427;GO:0004725//protein tyrosine phosphatase activity;GO:0019899//enzyme binding	GO:0006639//acylglycerol metabolic process;GO:0006470//protein dephosphorylation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0035264//multicellular organism growth;GO:0060123//regulation of growth hormone secretion;GO:0046888//negative regulation of hormone secretion;GO:0022414//reproductive process;GO:0006935//chemotaxis;GO:0006974//response to DNA damage stimulus;GO:0007599//hemostasis;GO:0033500//carbohydrate homeostasis;GO:0001959//regulation of cytokine-mediated signaling pathway;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0034330;GO:0033157//regulation of intracellular protein transport;GO:0050796//regulation of insulin secretion;GO:0000165//MAPKKK cascade;GO:0031294	gi|190589916|gb|ACE79217.1|/0/non-receptor type protein tyrosine phosphatase SHP2 [Sus scrofa]
gnl|UG|Ssc#S55319512	97	27.93	108	30.87	64	19.23	"Sus scrofa mRNA, clone:THY010204B05, expressed in thymus /gb=AK352054 /gi=288785372 /ug=Ssc.22206 /len=2636"	GO:0044424//intracellular part	GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|311246053|ref|XP_003122066.1|/0/PREDICTED: maternal embryonic leucine zipper kinase-like [Sus scrofa]
gnl|UG|Ssc#S58314943	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa RNA-binding protein with multiple splicing 2-like (LOC100515517), mRNA /cds=p(1,1155) /gb=XM_003121462 /gi=311244585 /ug=Ssc.87041 /len=1155"	GO:0043231//intracellular membrane-bounded organelle	GO:0003729//mRNA binding;GO:0003712//transcription cofactor activity	GO:0042307//positive regulation of protein import into nucleus;GO:0001934//positive regulation of protein phosphorylation	gi|311244586|ref|XP_003121510.1|/3.20497e-157/PREDICTED: RNA-binding protein with multiple splicing 2-like [Sus scrofa]
gnl|UG|Ssc#S23213237	22	6.33	14	4	19	5.71	"Sus scrofa clone Clu_3050.scr.msk.p1.Contig3, mRNA sequence /gb=AY609771 /gi=52351339 /ug=Ssc.51323 /len=2107"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0005515//protein binding;GO:0017111//nucleoside-triphosphatase activity;GO:0032559	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0009207;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	"gi|213972598|ref|NP_001093979.1|/0/proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Rattus norvegicus]"
gnl|UG|Ssc#S58305662	22	6.33	14	4	26	7.81	"PREDICTED: Sus scrofa protein FAM188A-like (LOC100512304), mRNA /cds=p(1,462) /gb=XM_003130745 /gi=311265708 /ug=Ssc.54924 /len=1294"	GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding	GO:0012501//programmed cell death	gi|311265709|ref|XP_003130793.1|/2.48762e-84/PREDICTED: protein FAM188A-like [Sus scrofa]
gnl|UG|Ssc#S35168740	11	3.17	7	2	13	3.91	"Sus scrofa mRNA, clone:THY010033C06, expressed in thymus /gb=AK238811 /gi=115550950 /ug=Ssc.3832 /len=1741"	GO:0030054//cell junction;GO:0016021//integral to membrane;GO:0044424//intracellular part	GO:0005372//water transmembrane transporter activity;GO:0015168//glycerol transmembrane transporter activity	GO:0010038//response to metal ion;GO:0042886//amide transport;GO:0003097//renal water transport;GO:0009887//organ morphogenesis;GO:0002376//immune system process;GO:0030856//regulation of epithelial cell differentiation;GO:0033189//response to vitamin A;GO:0008643//carbohydrate transport	gi|158819036|ref|NP_001103642.1|/5.31982e-168/aquaporin-3 [Sus scrofa]
gnl|UG|Ssc#S58311654	0	0	0	0	0	0	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase TRAF7-like (LOC100516964), mRNA /cds=p(205,2217) /gb=XM_003124733 /gi=311251817 /ug=Ssc.21218 /len=2598"	GO:0043234//protein complex;GO:0031410//cytoplasmic vesicle	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0019787//small conjugating protein ligase activity	GO:0006915//apoptosis;GO:0000165//MAPKKK cascade;GO:0032446//protein modification by small protein conjugation;GO:0010740//positive regulation of intracellular protein kinase cascade	gi|311251818|ref|XP_003124781.1|/0/PREDICTED: e3 ubiquitin-protein ligase TRAF7-like [Sus scrofa]
gnl|UG|Ssc#S58304605	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa slingshot homolog 2 (Drosophila) (SSH2), mRNA /cds=p(1,4182) /gb=XM_003131798 /gi=311268000 /ug=Ssc.90341 /len=4838"	GO:0044459//plasma membrane part;GO:0043232	GO:0008092//cytoskeletal protein binding;GO:0004721//phosphoprotein phosphatase activity	GO:0006470//protein dephosphorylation;GO:0030032//lamellipodium assembly;GO:0030832//regulation of actin filament length;GO:0010769//regulation of cell morphogenesis involved in differentiation	gi|311268001|ref|XP_003131846.1|/0/PREDICTED: protein phosphatase Slingshot homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S18549559	2	0.58	2	0.57	0	0	"BX918210 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0036.l.09 5prim, mRNA sequence /clone=scan0036.l.09 /clone_end=5' /gb=BX918210 /gi=90228683 /ug=Ssc.54366 /len=824"	GO:0000785//chromatin;GO:0000777//condensed chromosome kinetochore;GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0005102//receptor binding;GO:0003712//transcription cofactor activity;GO:0004468//lysine N-acetyltransferase activity;GO:0043426;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0016570//histone modification;GO:0006474//N-terminal protein amino acid acetylation;GO:0019827//stem cell maintenance;GO:0043388//positive regulation of DNA binding	gi|311251619|ref|XP_003124700.1|/1.40683e-11/PREDICTED: CREB-binding protein-like [Sus scrofa]
gnl|UG|Ssc#S23213319	22	6.33	8	2.29	22	6.61	"Sus scrofa clone Clu_25728.scr.msk.p1.Contig5, mRNA sequence /gb=AY609689 /gi=52351257 /ug=Ssc.17292 /len=1869"	-	-	-	-
gnl|UG|Ssc#S46875918	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa ral GTPase-activating protein subunit beta-like (LOC100152521), mRNA /cds=p(73,1116) /gb=XM_001928940 /gi=311274856 /ug=Ssc.35069 /len=1223"	GO:0044464//cell part	GO:0005099//Ras GTPase activator activity;GO:0046983//protein dimerization activity	GO:0032852	gi|73991976|ref|XP_866063.1|/0/PREDICTED: similar to Protein KIAA1219 isoform 4 [Canis familiaris]
gnl|UG|Ssc#S35173634	107	30.81	370	105.76	118	35.46	"Sus scrofa mRNA, clone:UTR010070B04, expressed in uterus /gb=AK240439 /gi=115546201 /ug=Ssc.3245 /len=985"	-	-	-	-
gnl|UG|Ssc#S58314895	0	0	8	2.29	4	1.2	"PREDICTED: Sus scrofa signal peptide peptidase-like 2A-like (LOC100522175), mRNA /cds=p(1,1725) /gb=XM_003121512 /gi=311244740 /ug=Ssc.18804 /len=3766"	GO:0031224//intrinsic to membrane	GO:0004175//endopeptidase activity	-	gi|311244741|ref|XP_003121560.1|/0/PREDICTED: signal peptide peptidase-like 2A-like [Sus scrofa]
gnl|UG|Ssc#S46878274	0	0	0	0	0	0	"PREDICTED: Sus scrofa reticulocalbin 2, EF-hand calcium binding domain (RCN2), mRNA /cds=p(1,1527) /gb=XM_001928955 /gi=311260743 /ug=Ssc.6216 /len=2205"	GO:0044432//endoplasmic reticulum part	GO:0046872//metal ion binding	-	gi|311260744|ref|XP_001928990.2|/0/PREDICTED: reticulocalbin-2 [Sus scrofa]
gnl|UG|Ssc#S40070978	0	0	0	0	0	0	"rfat0140_d2.y1 fat Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW165885 /gi=182560579 /ug=Ssc.90458 /len=599"	-	-	GO:0016192//vesicle-mediated transport	gi|291401781|ref|XP_002717211.1|/1.03395e-70/PREDICTED: exocyst complex component 1 isoform 3 [Oryctolagus cuniculus]
gnl|UG|Ssc#S58305338	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa dedicator of cytokinesis 9 (DOCK9), mRNA /cds=p(1,4833) /gb=XM_003131062 /gi=311266476 /ug=Ssc.4407 /len=5982"	GO:0044444//cytoplasmic part	GO:0032561;GO:0030695//GTPase regulator activity;GO:0019899//enzyme binding	GO:0007599//hemostasis	gi|311266477|ref|XP_003131110.1|/0/PREDICTED: dedicator of cytokinesis protein 9-like [Sus scrofa]
gnl|UG|Ssc#S58305638	33	9.5	33	9.43	42	12.62	"PREDICTED: Sus scrofa ATP-dependent metalloprotease YME1L1-like (LOC100515849), mRNA /cds=p(1,2220) /gb=XM_003130760 /gi=311265756 /ug=Ssc.6973 /len=3317"	GO:0043231//intracellular membrane-bounded organelle	GO:0004175//endopeptidase activity;GO:0043169//cation binding;GO:0016462//pyrophosphatase activity;GO:0032559	GO:0009057//macromolecule catabolic process;GO:0019538//protein metabolic process	gi|311265757|ref|XP_003130808.1|/0/PREDICTED: ATP-dependent metalloprotease YME1L1-like [Sus scrofa]
gnl|UG|Ssc#S43509644	34	9.79	25	7.15	43	12.92	"Sus scrofa valyl-tRNA synthetase (VARS), nuclear gene encoding mitochondrial protein, mRNA /cds=p(1,3189) /gb=NM_001123214 /gi=178056944 /ug=Ssc.15263 /len=3189"	-	-	-	-
gnl|UG|Ssc#S35168390	428	123.22	195	55.74	353	106.09	"Sus scrofa mRNA, clone:OVRM10131H09, expressed in ovary /gb=AK235978 /gi=115551300 /ug=Ssc.19649 /len=1587"	GO:0043234//protein complex	GO:0070011;GO:0061135;GO:0016790//thiolester hydrolase activity;GO:0043169//cation binding;GO:0032403//protein complex binding	"GO:0010952//positive regulation of peptidase activity;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0016579//protein deubiquitination;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|281342740|gb|EFB18324.1|/4.90389e-165/hypothetical protein PANDA_013895 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58303771	0	0	0	0	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100516697 (LOC100516697), partial mRNA /cds=p(1,2365) /gb=XM_003132626 /gi=311269882 /ug=Ssc.77263 /len=2365"	GO:0044297//cell body;GO:0042995//cell projection;GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0005085//guanyl-nucleotide exchange factor activity;GO:0000166//nucleotide binding	GO:0035556//intracellular signal transduction;GO:0006917//induction of apoptosis;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0019222//regulation of metabolic process;GO:0010975//regulation of neuron projection development	"gi|311269883|ref|XP_003132674.1|/0/PREDICTED: hypothetical protein LOC100516697, partial [Sus scrofa]"
gnl|UG|Ssc#S35173729	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:SPL010059F12, expressed in spleen /gb=AK237548 /gi=115546106 /ug=Ssc.81652 /len=2019"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0006355//regulation of transcription, DNA-dependent;GO:0006935//chemotaxis;GO:0048812//neuron projection morphogenesis"	"gi|148667781|gb|EDL00198.1|/2.5216e-156/Kruppel-like factor 7 (ubiquitous), isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S55322096	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:TCH010084E09, expressed in trachea /gb=AK351048 /gi=288782776 /ug=Ssc.13031 /len=2306"	GO:0031252//cell leading edge;GO:0044444//cytoplasmic part	GO:0004437//inositol or phosphatidylinositol phosphatase activity;GO:0004721//phosphoprotein phosphatase activity	GO:0006470//protein dephosphorylation	gi|311269232|ref|XP_003132404.1|/0/PREDICTED: myotubularin-related protein 14 isoform 3 [Sus scrofa]
gnl|UG|Ssc#S18547830	5	1.44	4	1.14	7	2.1	"BX916481 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0032.k.04 5prim, mRNA sequence /clone=scan0032.k.04 /clone_end=5' /gb=BX916481 /gi=90232201 /ug=Ssc.26065 /len=703"	GO:0031252//cell leading edge;GO:0005924//cell-substrate adherens junction;GO:0044444//cytoplasmic part	GO:0019900//kinase binding;GO:0019902//phosphatase binding;GO:0019904//protein domain specific binding	GO:0016477//cell migration;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0030036//actin cytoskeleton organization;GO:0050851//antigen receptor-mediated signaling pathway	gi|311771530|ref|NP_001185768.1|/2.33035e-27/breast cancer anti-estrogen resistance protein 1 isoform A [Mus musculus]
gnl|UG|Ssc#S19538090	8	2.3	2	0.57	4	1.2	"941381 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN154186 /gi=46168616 /ug=Ssc.19235 /len=867"	GO:0031224//intrinsic to membrane	-	-	gi|291391938|ref|XP_002712399.1|/1.02273e-124/PREDICTED: transmembrane protein with EGF-like and two follistatin-like domains 2 [Oryctolagus cuniculus]
gnl|UG|Ssc#S55323914	1340	385.79	328	93.76	1860	558.98	"Sus scrofa mRNA, clone:AMP010033F06, expressed in alveolar macrophages /gb=AK343747 /gi=288780958 /ug=Ssc.3842 /len=866"	GO:0015934//large ribosomal subunit	GO:0003723//RNA binding;GO:0042802//identical protein binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0042254//ribosome biogenesis	"gi|119607405|gb|EAW86999.1|/4.2969e-123/ribosomal protein L7, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S58301252	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa probable ribonuclease ZC3H12B-like (LOC100513638), mRNA /cds=p(108,2921) /gb=XM_003135144 /gi=311276403 /ug=Ssc.72347 /len=2921"	-	GO:0004518//nuclease activity;GO:0046914//transition metal ion binding	-	gi|311276404|ref|XP_003135192.1|/0/PREDICTED: probable ribonuclease ZC3H12B-like [Sus scrofa]
gnl|UG|Ssc#S20116342	141	40.59	108	30.87	147	44.18	"Sus scrofa platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) (PAFAH1B1), mRNA /cds=p(510,1742) /gb=NM_214250 /gi=47523579 /ug=Ssc.802 /len=2059"	"GO:0005818//aster;GO:0030427//site of polarized growth;GO:0031981//nuclear lumen;GO:0072372//primary cilium;GO:0030424//axon;GO:0005875//microtubule associated complex;GO:0005635//nuclear envelope;GO:0005815//microtubule organizing center;GO:0000775//chromosome, centromeric region;GO:0005624//membrane fraction;GO:0044297//cell body"	GO:0016407//acetyltransferase activity;GO:0005539//glycosaminoglycan binding;GO:0042802//identical protein binding;GO:0015631//tubulin binding;GO:0019899//enzyme binding;GO:0045502//dynein binding	GO:0007346//regulation of mitotic cell cycle;GO:0051301//cell division;GO:0003006//developmental process involved in reproduction;GO:0021952//central nervous system projection neuron axonogenesis;GO:0040001//establishment of mitotic spindle localization;GO:0021543//pallium development;GO:0006998//nuclear envelope organization;GO:0032318//regulation of Ras GTPase activity;GO:0016477//cell migration;GO:0051789//response to protein stimulus;GO:0010975//regulation of neuron projection development;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0007626//locomotory behavior;GO:0040023//establishment of nucleus localization;GO:0006650//glycerophospholipid metabolic process;GO:0030307//positive regulation of cell growth;GO:0051648//vesicle localization;GO:0007267//cell-cell signaling;GO:0050905//neuromuscular process;GO:0007067//mitosis;GO:0009887//organ morphogenesis;GO:0008088//axon cargo transport	gi|47523580|ref|NP_999415.1|/0/platelet-activating factor acetylhydrolase IB subunit alpha [Sus scrofa]
gnl|UG|Ssc#S58301277	11	3.17	25	7.15	10	3.01	"PREDICTED: Sus scrofa FYVE, RhoGEF and PH domain containing 1 (FGD1), mRNA /cds=p(1,2883) /gb=XM_003135106 /gi=311276353 /ug=Ssc.16381 /len=3475"	-	-	-	-
gnl|UG|Ssc#S35172889	19	5.47	22	6.29	39	11.72	"Sus scrofa mRNA, clone:UTR010105E09, expressed in uterus /gb=AK240592 /gi=115546946 /ug=Ssc.50071 /len=968"	-	-	-	-
gnl|UG|Ssc#S35166136	28	8.06	70	20.01	20	6.01	"Sus scrofa mRNA, clone:THY010204E12, expressed in thymus /gb=AK239789 /gi=115553602 /ug=Ssc.19354 /len=1399"	GO:0005740//mitochondrial envelope	-	GO:0006810//transport	gi|311269339|ref|XP_003132443.1|/2.68571e-63/PREDICTED: mitochondrial intermembrane space import and assembly protein 40-like [Sus scrofa]
gnl|UG|Ssc#S58308545	14	4.03	29	8.29	19	5.71	"PREDICTED: Sus scrofa small nuclear ribonucleoprotein Sm D1-like (LOC100524872), mRNA /cds=p(123,482) /gb=XM_003127854 /gi=311259029 /ug=Ssc.2615 /len=902"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding	"GO:0048513//organ development;GO:0000398//nuclear mRNA splicing, via spliceosome"	"gi|148691046|gb|EDL22993.1|/7.04802e-47/mCG14669, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S20458028	12	3.45	20	5.72	8	2.4	"UMC-pgvo2-003-c06 Germinal-Vesicle-Oocyte pgvo Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN031648 /gi=48726184 /ug=Ssc.85434 /len=352"	-	-	-	gi|74006647|ref|XP_860167.1|/5.82167e-23/PREDICTED: similar to SET protein (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A) (Template activating factor I) (TAF-I) (Liver regeneration-related protein LRRGR00002) isoform 3 [Canis familiaris]
gnl|UG|Ssc#S46879483	20	5.76	22	6.29	12	3.61	"PREDICTED: Sus scrofa PPPDE peptidase domain-containing protein 2-like (LOC100152991), mRNA /cds=p(193,699) /gb=XM_001929064 /gi=311255009 /ug=Ssc.4835 /len=3190"	-	-	-	gi|194037184|ref|XP_001929099.1|/2.31489e-85/PREDICTED: PPPDE peptidase domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S47005761	0	0	0	0	0	0	"Sus scrofa protection of telomeres 1 isoform 4 mRNA, complete cds, alternatively spliced /cds=p(67,1590) /gb=FJ167678 /gi=205363462 /ug=Ssc.8508 /len=1708"	GO:0031981//nuclear lumen;GO:0000782	GO:0003697//single-stranded DNA binding;GO:0019899//enzyme binding;GO:0004857//enzyme inhibitor activity	GO:0051095;GO:0051054//positive regulation of DNA metabolic process;GO:0051348//negative regulation of transferase activity;GO:0051347//positive regulation of transferase activity;GO:0007004//telomere maintenance via telomerase;GO:0032392//DNA geometric change	gi|212549655|ref|NP_001131107.1|/0/protection of telomeres protein 1 [Sus scrofa]
gnl|UG|Ssc#S58301200	18	5.18	4	1.14	13	3.91	"PREDICTED: Sus scrofa hypothetical protein LOC100514747 (LOC100514747), mRNA /cds=p(1,1056) /gb=XM_003135197 /gi=311276529 /ug=Ssc.45251 /len=1056"	-	-	-	gi|311276530|ref|XP_003135245.1|/0/PREDICTED: hypothetical protein LOC100514747 [Sus scrofa]
gnl|UG|Ssc#S58304222	5	1.44	2	0.57	7	2.1	"PREDICTED: Sus scrofa microtubule-associated protein 4-like (LOC100519172), mRNA /cds=p(125,3496) /gb=XM_003132175 /gi=311268827 /ug=Ssc.22393 /len=3547"	GO:0015630//microtubule cytoskeleton	GO:0005488//binding	-	gi|311268828|ref|XP_003132223.1|/0/PREDICTED: microtubule-associated protein 4-like [Sus scrofa]
gnl|UG|Ssc#S35167285	5	1.44	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10195D01, expressed in ovary /gb=AK236459 /gi=115552454 /ug=Ssc.23818 /len=2163"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0005488//binding	"GO:0007049//cell cycle;GO:0000463//maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"	gi|311253291|ref|XP_003125513.1|/0/PREDICTED: ribosome biogenesis protein BOP1-like [Sus scrofa]
gnl|UG|Ssc#S58301195	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa alpha thalassemia/mental retardation syndrome X-linked (ATRX), mRNA /cds=p(147,2645) /gb=XM_003135204 /gi=311276540 /ug=Ssc.75262 /len=2645"	GO:0000790//nuclear chromatin	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0004386//helicase activity;GO:0019904//protein domain specific binding;GO:0032559	"GO:0006305;GO:0033554//cellular response to stress;GO:0006351//transcription, DNA-dependent"	gi|311276541|ref|XP_003135252.1|/0/PREDICTED: transcriptional regulator ATRX [Sus scrofa]
gnl|UG|Ssc#S19542887	0	0	2	0.57	0	0	"947995 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158983 /gi=46173413 /ug=Ssc.26855 /len=839"	GO:0044444//cytoplasmic part;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	GO:0016070//RNA metabolic process	gi|194226343|ref|XP_001488421.2|/4.77567e-55/PREDICTED: similar to poly(rC) binding protein 3 [Equus caballus]
gnl|UG|Ssc#S35167670	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:THY010087C12, expressed in thymus /gb=AK239262 /gi=115552069 /ug=Ssc.3914 /len=1164"	-	-	-	gi|297266286|ref|XP_001104183.2|/4.26799e-117/PREDICTED: protease-associated domain-containing protein of 21 kDa [Macaca mulatta]
gnl|UG|Ssc#S46877763	2	0.58	2	0.57	5	1.5	"PREDICTED: Sus scrofa NEDD4 family-interacting protein 2-like (LOC100152028), mRNA /cds=p(1,1011) /gb=XM_001926577 /gi=311266425 /ug=Ssc.9534 /len=2545"	GO:0031224//intrinsic to membrane;GO:0005768//endosome;GO:0031090//organelle membrane	GO:0060089;GO:0019904//protein domain specific binding	GO:0032409;GO:0016567//protein ubiquitination;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0010467//gene expression;GO:0051051//negative regulation of transport	gi|194040754|ref|XP_001926612.1|/2.23878e-128/PREDICTED: NEDD4 family-interacting protein 2-like [Sus scrofa]
gnl|UG|Ssc#S35167815	49	14.11	213	60.89	72	21.64	"Sus scrofa mRNA, clone:OVRM10182E07, expressed in ovary /gb=AK236331 /gi=115551924 /ug=Ssc.24754 /len=1950"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0003723//RNA binding;GO:0005515//protein binding	GO:0000377	gi|77735745|ref|NP_001029567.1|/2.30117e-90/heterogeneous nuclear ribonucleoprotein C [Bos taurus]
gnl|UG|Ssc#S35167520	4	1.15	0	0	2	0.6	"Sus scrofa mRNA, clone:AMP010006D10, expressed in alveolar macrophage /gb=AK230528 /gi=115552219 /ug=Ssc.68 /len=2140"	GO:0044429//mitochondrial part	GO:0004774//succinate-CoA ligase activity;GO:0043169//cation binding;GO:0032559	GO:0043648//dicarboxylic acid metabolic process;GO:0006104//succinyl-CoA metabolic process;GO:0009060//aerobic respiration	"gi|311266259|ref|XP_003131022.1|/0/PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S50838372	6	1.73	0	0	0	0	"Sus scrofa zinc finger protein 64 homolog (mouse) (ZFP64), mRNA /cds=p(144,2186) /gb=NM_001113449 /gi=224593281 /ug=Ssc.74828 /len=2526"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent;GO:0032501//multicellular organismal process"	gi|224593282|ref|NP_001106920.1|/0/zinc finger protein 64 [Sus scrofa]
gnl|UG|Ssc#S58312883	14	4.03	0	0	9	2.7	"PREDICTED: Sus scrofa UPF0459 protein C19orf50 homolog, transcript variant 2 (LOC100522304), mRNA /cds=p(73,603) /gb=XM_003123519 /gi=311249300 /ug=Ssc.2901 /len=1383"	-	-	-	gi|311249299|ref|XP_003123566.1|/1.82351e-80/PREDICTED: UPF0459 protein C19orf50 homolog isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46878725	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa breast cancer metastasis-suppressor 1-like (BRMS1L), mRNA /cds=p(230,1201) /gb=XM_001926256 /gi=311260876 /ug=Ssc.13929 /len=2708"	GO:0043231//intracellular membrane-bounded organelle	-	"GO:0006351//transcription, DNA-dependent;GO:0050789//regulation of biological process"	"gi|148704772|gb|EDL36719.1|/2.00079e-175/mCG22342, isoform CRA_c [Mus musculus]"
gnl|UG|Ssc#S35172631	9	2.59	2	0.57	4	1.2	"Sus scrofa mRNA, clone:OVR010089H06, expressed in ovary /gb=AK234577 /gi=115547204 /ug=Ssc.18370 /len=1224"	GO:0043231//intracellular membrane-bounded organelle	"GO:0008135//translation factor activity, nucleic acid binding;GO:0030528//transcription regulator activity"	"GO:0006354//transcription elongation, DNA-dependent;GO:0006412//translation"	"gi|27806377|ref|NP_776629.1|/1.83299e-158/elongation factor Ts, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S23697114	3	0.86	0	0	0	0	"1105713 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN108217 /gi=59783797 /ug=Ssc.22073 /len=793"	-	-	-	-
gnl|UG|Ssc#S58303706	12	3.45	41	11.72	31	9.32	"PREDICTED: Sus scrofa activated leukocyte cell adhesion molecule (ALCAM), partial mRNA /cds=p(1,1679) /gb=XM_003132691 /gi=311270035 /ug=Ssc.42933 /len=4154"	GO:0009986//cell surface;GO:0043005//neuron projection;GO:0031224//intrinsic to membrane;GO:0044297//cell body	GO:0005515//protein binding	GO:0007411//axon guidance;GO:0023052//signaling	"gi|311270036|ref|XP_003132739.1|/0/PREDICTED: CD166 antigen, partial [Sus scrofa]"
gnl|UG|Ssc#S58303882	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa sucrase-isomaltase, intestinal-like (LOC100515968), mRNA /cds=p(51,1379) /gb=XM_003132515 /gi=311269606 /ug=Ssc.61633 /len=1817"	GO:0005886//plasma membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0044425//membrane part	GO:0004558//alpha-glucosidase activity	GO:0009725//response to hormone stimulus;GO:0007584//response to nutrient;GO:0009743//response to carbohydrate stimulus;GO:0007586//digestion;GO:0044238//primary metabolic process	"gi|311269607|ref|XP_003132563.1|/0/PREDICTED: sucrase-isomaltase, intestinal-like [Sus scrofa]"
gnl|UG|Ssc#S58309773	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa serine/arginine-rich splicing factor 2, interacting protein (SRSF2IP), mRNA /cds=p(1,4368) /gb=XM_003126624 /gi=311256484 /ug=Ssc.7145 /len=4994"	-	GO:0046872//metal ion binding	"GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|311256485|ref|XP_003126672.1|/0/PREDICTED: SRSF2-interacting protein-like [Sus scrofa]
gnl|UG|Ssc#S58312329	16	4.61	4	1.14	20	6.01	"PREDICTED: Sus scrofa transcription elongation regulator 1-like (LOC100511121), mRNA /cds=p(443,1564) /gb=XM_003124072 /gi=311250435 /ug=Ssc.981 /len=2586"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0005488//binding;GO:0003712//transcription cofactor activity	"GO:0006351//transcription, DNA-dependent"	gi|301778641|ref|XP_002924736.1|/0/PREDICTED: transcription elongation regulator 1-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58309652	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa acyl-CoA synthetase short-chain family member 3, mitochondrial-like (LOC100511383), mRNA /cds=p(108,500) /gb=XM_003126746 /gi=311256761 /ug=Ssc.21809 /len=2853"	GO:0043231//intracellular membrane-bounded organelle	GO:0016405//CoA-ligase activity;GO:0032559	-	"gi|311256762|ref|XP_003126794.1|/1.92007e-67/PREDICTED: acyl-CoA synthetase short-chain family member 3, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S46875792	19	5.47	12	3.43	8	2.4	"PREDICTED: Sus scrofa fragile X mental retardation 1, transcript variant 1 (FMR1), mRNA /cds=p(241,2139) /gb=XM_001925732 /gi=311277086 /ug=Ssc.25167 /len=2692"	GO:0005840//ribosome;GO:0030425//dendrite;GO:0031981//nuclear lumen;GO:0005624//membrane fraction;GO:0034518	GO:0003723//RNA binding	GO:0050658//RNA transport;GO:0007399//nervous system development;GO:0006446//regulation of translational initiation	gi|194044848|ref|XP_001925767.1|/0/PREDICTED: fragile X mental retardation 1 protein isoform 1 [Sus scrofa]
gnl|UG|Ssc#S18382513	3	0.86	0	0	0	0	"933094 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK462304 /gi=40833585 /ug=Ssc.84717 /len=810"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	GO:0016787//hydrolase activity	GO:0051605//protein maturation by peptide bond cleavage;GO:0030073//insulin secretion;GO:0015980//energy derivation by oxidation of organic compounds	gi|293342440|ref|XP_002725236.1|/4.9442e-46/PREDICTED: signal peptidase complex subunit 3-like [Rattus norvegicus]
gnl|UG|Ssc#S35172032	809	232.92	1623	463.93	417	125.32	"Sus scrofa mRNA, clone:OVRM10015E04, expressed in ovary /gb=AK234779 /gi=115547803 /ug=Ssc.11024 /len=1482"	GO:0043231//intracellular membrane-bounded organelle;GO:0044297//cell body;GO:0000267//cell fraction;GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0007265//Ras protein signal transduction;GO:0009207;GO:0048193//Golgi vesicle transport;GO:0015031//protein transport	gi|297667485|ref|XP_002812010.1|/7.53514e-112/PREDICTED: ras-related protein Rab-1A-like [Pongo abelii]
gnl|UG|Ssc#S50699635	2	0.58	0	0	2	0.6	"Sus scrofa HLA-B-associated protein 5 (BAT5) mRNA, complete cds /cds=p(41,1717) /gb=EU282343 /gi=162138212 /ug=Ssc.10991 /len=1971"	GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0003824//catalytic activity	-	gi|305855128|ref|NP_001182255.1|/0/protein BAT5 [Sus scrofa]
gnl|UG|Ssc#S58311884	3	0.86	0	0	5	1.5	"PREDICTED: Sus scrofa sarcoplasmic/endoplasmic reticulum calcium ATPase 1-like, transcript variant 2 (LOC100516962), mRNA /cds=p(179,3181) /gb=XM_003124518 /gi=311251340 /ug=Ssc.55270 /len=3450"	GO:0005789//endoplasmic reticulum membrane;GO:0031672//A band;GO:0034703//cation channel complex;GO:0042598//vesicular fraction	GO:0019829//cation-transporting ATPase activity;GO:0046872//metal ion binding;GO:0015144//carbohydrate transmembrane transporter activity;GO:0042802//identical protein binding;GO:0032559	GO:0008643//carbohydrate transport;GO:0051657;GO:0007599//hemostasis;GO:0051560;GO:0090075;GO:0032469//endoplasmic reticulum calcium ion homeostasis;GO:0009207;GO:0031443//fast-twitch skeletal muscle fiber contraction;GO:0006915//apoptosis;GO:0033554//cellular response to stress;GO:0001775//cell activation;GO:0070588//calcium ion transmembrane transport;GO:0009206;GO:0009725//response to hormone stimulus;GO:0006942//regulation of striated muscle contraction	gi|311251341|ref|XP_003124566.1|/0/PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55319192	5	1.44	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10205H03, expressed in liver /gb=AK346500 /gi=288785692 /ug=Ssc.22954 /len=1360"	GO:0044424//intracellular part	GO:0004721//phosphoprotein phosphatase activity	GO:0006464//protein modification process;GO:0022403;GO:0048232//male gamete generation	gi|311271406|ref|XP_001929090.2|/4.00408e-149/PREDICTED: dual specificity protein phosphatase 13-like [Sus scrofa]
gnl|UG|Ssc#S35169963	3	0.86	5	1.43	0	0	"Sus scrofa mRNA, clone:TES010060B11, expressed in testis /gb=AK238536 /gi=115549876 /ug=Ssc.94005 /len=2099"	-	-	-	gi|194215680|ref|XP_001917178.1|/3.09677e-173/PREDICTED: similar to Coiled-coil domain-containing protein 9 [Equus caballus]
gnl|UG|Ssc#S20939129	21	6.05	7	2	21	6.31	"AJ650852 CSEQRAN19 Sus scrofa cDNA clone C0003276_I10, mRNA sequence /clone=C0003276_I10 /gb=AJ650852 /gi=49327697 /ug=Ssc.85673 /len=536"	GO:0031332;GO:0048770	"GO:0005488//binding;GO:0003712//transcription cofactor activity;GO:0016788//hydrolase activity, acting on ester bonds"	"GO:0016458//gene silencing;GO:0051704;GO:0006351//transcription, DNA-dependent"	gi|77404395|ref|NP_073185.2|/2.79191e-96/staphylococcal nuclease domain-containing protein 1 [Rattus norvegicus]
gnl|UG|Ssc#S58307397	357	102.78	528	150.93	146	43.88	"PREDICTED: Sus scrofa platelet-derived growth factor C-like (LOC100515267), partial mRNA /cds=p(1,567) /gb=XM_003129000 /gi=311262166 /ug=Ssc.25067 /len=2076"	GO:0044432//endoplasmic reticulum part;GO:0012505//endomembrane system;GO:0044421//extracellular region part	GO:0042802//identical protein binding;GO:0070851//growth factor receptor binding	GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007399//nervous system development;GO:0008284//positive regulation of cell proliferation;GO:0006275//regulation of DNA replication	"gi|311262167|ref|XP_003129048.1|/2.25056e-99/PREDICTED: platelet-derived growth factor C-like, partial [Sus scrofa]"
gnl|UG|Ssc#S35173445	0	0	11	3.14	0	0	"Sus scrofa mRNA, clone:AMP010062G01, expressed in alveolar macrophage /gb=AK230909 /gi=115546390 /ug=Ssc.53746 /len=2273"	GO:0032991//macromolecular complex;GO:0000267//cell fraction;GO:0048770;GO:0030665//clathrin coated vesicle membrane	GO:0005515//protein binding;GO:0032559;GO:0016887//ATPase activity	GO:0016070//RNA metabolic process;GO:0009207;GO:0048193//Golgi vesicle transport;GO:0001505//regulation of neurotransmitter levels;GO:0006950//response to stress;GO:0051704;GO:0051084//'de novo' posttranslational protein folding;GO:0007049//cell cycle	gi|5729877|ref|NP_006588.1|/0/heat shock cognate 71 kDa protein isoform 1 [Homo sapiens]
gnl|UG|Ssc#S40375059	33	9.5	4	1.14	36	10.82	"rnmm10c_k3.y1 nmm Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW469666 /gi=182775082 /ug=Ssc.91639 /len=604"	GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0044459//plasma membrane part;GO:0043232	GO:0004674//protein serine/threonine kinase activity;GO:0019900//kinase binding;GO:0032559	GO:0050896//response to stimulus;GO:0006796//phosphate metabolic process;GO:0006813//potassium ion transport;GO:0006464//protein modification process	"gi|194222277|ref|XP_001494167.2|/1.92137e-99/PREDICTED: serine threonine kinase 39 (STE20/SPS1 homolog, yeast) [Equus caballus]"
gnl|UG|Ssc#S35164189	7	2.02	6	1.72	0	0	"Sus scrofa mRNA, clone:SPL010006H10, expressed in spleen /gb=AK237169 /gi=115555537 /ug=Ssc.4324 /len=1434"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005515//protein binding	GO:0006950//response to stress;GO:0023051;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|149726349|ref|XP_001504436.1|/2.9833e-158/PREDICTED: similar to Calcium signal-modulating cyclophilin ligand (CAML) [Equus caballus]
gnl|UG|Ssc#S35171706	2	0.58	7	2	3	0.9	"Sus scrofa mRNA, clone:TCH010046B07, expressed in trachea /gb=AK238113 /gi=115548129 /ug=Ssc.30599 /len=1463"	-	-	-	-
gnl|UG|Ssc#S34528388	9	2.59	3	0.86	25	7.51	"DB802459 full-length enriched swine cDNA library, adult skin Sus scrofa cDNA clone SKNB10044B10 5', mRNA sequence /clone=SKNB10044B10 /clone_end=5' /gb=DB802459 /gi=112747562 /ug=Ssc.44062 /len=701"	-	-	-	-
gnl|UG|Ssc#S46880392	11	3.17	0	0	24	7.21	"PREDICTED: Sus scrofa sorting nexin 14, transcript variant 1 (SNX14), mRNA /cds=p(1,2841) /gb=XM_001927319 /gi=311244130 /ug=Ssc.24784 /len=3018"	GO:0031224//intrinsic to membrane	GO:0005543//phospholipid binding;GO:0060089	GO:0023052//signaling;GO:0009987//cellular process;GO:0006810//transport	gi|194035291|ref|XP_001927354.1|/0/PREDICTED: sorting nexin-14 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55325023	3	0.86	2	0.57	3	0.9	"Sus scrofa mRNA, clone:PTG010110E11, expressed in pituitary gland /gb=AK349585 /gi=288779849 /ug=Ssc.90992 /len=3574"	GO:0016020//membrane	GO:0035091//phosphatidylinositol binding;GO:0005515//protein binding	GO:0043009//chordate embryonic development;GO:0048731;GO:0006887//exocytosis;GO:0010467//gene expression;GO:0007267//cell-cell signaling;GO:0040007//growth;GO:0007610//behavior	"gi|194206361|ref|XP_001917083.1|/0/PREDICTED: amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like) [Equus caballus]"
gnl|UG|Ssc#S55327945	16	4.61	10	2.86	8	2.4	"Sus scrofa LIM homeobox 8 (LHX8), mRNA /cds=p(244,1131) /gb=NM_001166315 /gi=261490775 /ug=Ssc.78542 /len=1681"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	"GO:0046914//transition metal ion binding;GO:0016758//transferase activity, transferring hexosyl groups;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding"	"GO:0042476//odontogenesis;GO:0021879//forebrain neuron differentiation;GO:0006351//transcription, DNA-dependent;GO:0007610//behavior;GO:0008406//gonad development;GO:0006464//protein modification process"	gi|281354377|gb|EFB29961.1|/2.71177e-176/hypothetical protein PANDA_005098 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S26720004	3	0.86	0	0	6	1.8	"AJ956088 KN404_2 Sus scrofa cDNA clone C0007759h03 3', mRNA sequence /clone=C0007759h03 /clone_end=3' /gb=AJ956088 /gi=74372904 /ug=Ssc.21117 /len=881"	-	-	-	-
gnl|UG|Ssc#S19537395	12	3.45	6	1.72	8	2.4	"940702 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN153571 /gi=46168001 /ug=Ssc.82286 /len=678"	-	-	-	-
gnl|UG|Ssc#S46877554	441	126.97	151	43.16	379	113.9	"PREDICTED: Sus scrofa ubiquinol--cytochrome c reductase (LOC100156879), mRNA /cds=p(47,1492) /gb=XM_001926629 /gi=311268858 /ug=Ssc.54260 /len=1625"	GO:0005746//mitochondrial respiratory chain	GO:0015078//hydrogen ion transmembrane transporter activity;GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0019538//protein metabolic process;GO:0022904//respiratory electron transport chain;GO:0051234//establishment of localization;GO:0010033//response to organic substance	"gi|311268859|ref|XP_001926664.2|/0/PREDICTED: cytochrome b-c1 complex subunit 1, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S43495969	4	1.15	0	0	5	1.5	"BW999685 full-length enriched pig cDNA library, main and accessory lymphocyte Sus scrofa cDNA clone HY_AlphaBeta_13.2_A10_f 5', mRNA sequence /clone=HY_AlphaBeta_13.2_A10_f /clone_end=5' /gb=BW999685 /gi=179429195 /ug=Ssc.94250 /len=887"	GO:0044431//Golgi apparatus part	GO:0019783//small conjugating protein-specific protease activity	GO:0007030//Golgi organization;GO:0048284//organelle fusion;GO:0032446//protein modification by small protein conjugation;GO:0000087//M phase of mitotic cell cycle	gi|311253763|ref|XP_003125656.1|/1.79985e-164/PREDICTED: deubiquitinating protein VCIP135-like [Sus scrofa]
gnl|UG|Ssc#S55295422	2	0.58	8	2.29	2	0.6	"FS685165 full-length enriched swine cDNA library, adult longissimus Sus scrofa cDNA clone MLTL10087C08 5', mRNA sequence /clone=MLTL10087C08 /clone_end=5' /gb=FS685165 /gi=288293454 /ug=Ssc.78258 /len=619"	-	-	-	-
gnl|UG|Ssc#S55324088	444	127.83	1343	383.89	354	106.39	"Sus scrofa mRNA, clone:SMG010091C12, expressed in submaxillary gland /gb=AK350120 /gi=288780784 /ug=Ssc.17179 /len=2782"	-	-	-	-
gnl|UG|Ssc#S35167703	157	45.2	86	24.58	130	39.07	"Sus scrofa mRNA, clone:THY010080H04, expressed in thymus /gb=AK239229 /gi=115552036 /ug=Ssc.81954 /len=1342"	-	-	-	-
gnl|UG|Ssc#S58313859	135	38.87	150	42.88	169	50.79	"PREDICTED: Sus scrofa Sjoegren syndrome/scleroderma autoantigen 1-like (LOC100518235), mRNA /cds=p(1,948) /gb=XM_003122561 /gi=311247311 /ug=Ssc.27060 /len=1102"	-	GO:0005515//protein binding	GO:0000087//M phase of mitotic cell cycle	gi|311247312|ref|XP_003122609.1|/1.42814e-159/PREDICTED: Sjoegren syndrome/scleroderma autoantigen 1-like [Sus scrofa]
gnl|UG|Ssc#S58310131	2	0.58	2	0.57	4	1.2	"PREDICTED: Sus scrofa extended synaptotagmin-1-like, transcript variant 2 (LOC100519485), mRNA /cds=p(85,3417) /gb=XM_003126263 /gi=311255663 /ug=Ssc.5151 /len=4231"	GO:0031224//intrinsic to membrane	-	-	gi|311255664|ref|XP_003126311.1|/0/PREDICTED: extended synaptotagmin-1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35169117	107	30.81	292	83.47	80	24.04	"Sus scrofa mRNA, clone:OVRM10116B06, expressed in ovary /gb=AK235796 /gi=115550722 /ug=Ssc.6473 /len=1597"	GO:0044421//extracellular region part	GO:0008047//enzyme activator activity;GO:0005515//protein binding;GO:0005539//glycosaminoglycan binding	GO:0019538//protein metabolic process;GO:0032501//multicellular organismal process;GO:0051345//positive regulation of hydrolase activity	gi|194218844|ref|XP_001505108.2|/0/PREDICTED: procollagen C-endopeptidase enhancer [Equus caballus]
gnl|UG|Ssc#S26648597	0	0	0	0	3	0.9	"BW979660 full-length enriched swine cDNA library, adult intestine Sus scrofa cDNA clone ITT010041A11 5', mRNA sequence /clone=ITT010041A11 /clone_end=5' /gb=BW979660 /gi=74256500 /ug=Ssc.2274 /len=846"	GO:0016021//integral to membrane;GO:0031225//anchored to membrane	GO:0005102//receptor binding	GO:0010594//regulation of endothelial cell migration;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0003176;GO:0001837//epithelial to mesenchymal transition;GO:0003188;GO:0010769//regulation of cell morphogenesis involved in differentiation;GO:0007154//cell communication;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007399//nervous system development;GO:0003174;GO:0000165//MAPKKK cascade	gi|178056574|ref|NP_001116582.1|/4.10932e-30/ephrin-A1 precursor [Sus scrofa]
gnl|UG|Ssc#S35172947	2	0.58	2	0.57	2	0.6	"Sus scrofa mRNA, clone:SPL010086E01, expressed in spleen /gb=AK237734 /gi=115546888 /ug=Ssc.9714 /len=1663"	GO:0043234//protein complex	GO:0000989//transcription factor binding transcription factor activity;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	GO:0045596//negative regulation of cell differentiation;GO:0014020;GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|149410634|ref|XP_001506631.1|/6.6164e-43/PREDICTED: similar to breast tumor autoantigen [Ornithorhynchus anatinus]
gnl|UG|Ssc#S18379318	12	3.45	50	14.29	8	2.4	"929612 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK459427 /gi=40830708 /ug=Ssc.51233 /len=211"	-	-	-	-
gnl|UG|Ssc#S35166892	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:THY010104G12, expressed in thymus /gb=AK239441 /gi=115552847 /ug=Ssc.31007 /len=1171"	-	-	-	gi|115497102|ref|NP_001068754.1|/1.9518e-93/coiled-coil domain containing 32 [Bos taurus]
gnl|UG|Ssc#S35164123	437	125.81	95	27.16	466	140.05	"Sus scrofa mRNA, clone:SPL010015D07, expressed in spleen /gb=AK237235 /gi=115555603 /ug=Ssc.53702 /len=2131"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0051707//response to other organism;GO:0006412//translation	gi|311247489|ref|XP_003122665.1|/0/PREDICTED: elongation factor 1-gamma [Sus scrofa]
gnl|UG|Ssc#S55327296	112	32.25	265	75.75	170	51.09	"Sus scrofa mRNA, clone:OVR010015E06, expressed in ovary /gb=AK347353 /gi=288576760 /ug=Ssc.26230 /len=1425"	GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0005515//protein binding	GO:0035556//intracellular signal transduction;GO:0016049//cell growth;GO:0009207	gi|114663054|ref|XP_001143391.1|/4.75434e-132/PREDICTED: similar to Rad [Pan troglodytes]
gnl|UG|Ssc#S58311297	8	2.3	26	7.43	14	4.21	"PREDICTED: Sus scrofa ubiquitin carboxyl-terminal hydrolase 34-like (LOC100524555), mRNA /cds=p(46,2994) /gb=XM_003125113 /gi=311252550 /ug=Ssc.62728 /len=2994"	-	GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0019941//modification-dependent protein catabolic process	"gi|301783585|ref|XP_002927208.1|/0/PREDICTED: ubiquitin carboxyl-terminal hydrolase 34-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S46878799	200	57.58	637	182.09	137	41.17	"PREDICTED: Sus scrofa enhanced at puberty protein 1-like (LOC100152768), mRNA /cds=p(555,2906) /gb=XM_001928316 /gi=311261372 /ug=Ssc.915 /len=3751"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|194038605|ref|XP_001928351.1|/0/PREDICTED: enhanced at puberty protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55323776	5	1.44	5	1.43	3	0.9	"Sus scrofa mRNA, clone:SPL010017H01, expressed in spleen /gb=AK350235 /gi=288781096 /ug=Ssc.54250 /len=1966"	GO:0034399//nuclear periphery;GO:0015630//microtubule cytoskeleton;GO:0031090//organelle membrane;GO:0000228//nuclear chromosome;GO:0005768//endosome	GO:0070011;GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0006810//transport;GO:0045013//carbon catabolite repression of transcription;GO:0007090//regulation of S phase of mitotic cell cycle;GO:0000070//mitotic sister chromatid segregation	gi|73956803|ref|XP_546776.2|/1.28043e-80/PREDICTED: similar to Chromatin modifying protein 1 (Charged multivesicular body protein 1) (CHMP1) isoform 1 [Canis familiaris]
gnl|UG|Ssc#S40347145	2	0.58	0	0	4	1.2	"rnep31c_a11.y1 nep Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW441752 /gi=182823965 /ug=Ssc.63704 /len=596"	-	-	-	-
gnl|UG|Ssc#S46876693	6	1.73	2	0.57	11	3.31	"PREDICTED: Sus scrofa serine/threonine kinase, transcript variant 1 (LOC100154763), mRNA /cds=p(430,3126) /gb=XM_001924400 /gi=311270659 /ug=Ssc.10645 /len=3172"	GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0004672//protein kinase activity;GO:0032559;GO:0019887//protein kinase regulator activity	GO:0043410//positive regulation of MAPKKK cascade;GO:0006468//protein phosphorylation;GO:0043409//negative regulation of MAPKKK cascade	gi|311270658|ref|XP_003132937.1|/0/PREDICTED: serine/threonine-protein kinase TAO3 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S39797959	62	17.85	96	27.44	48	14.43	"rcad06b_p17.y1 cag Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV893237 /gi=178524392 /ug=Ssc.90288 /len=274"	-	-	-	-
gnl|UG|Ssc#S46876712	6	1.73	0	0	0	0	"PREDICTED: Sus scrofa intraflagellar transport protein 81 homolog (LOC100156117), mRNA /cds=p(1,2031) /gb=XM_001929346 /gi=311270617 /ug=Ssc.18864 /len=2577"	GO:0005815//microtubule organizing center;GO:0019861//flagellum;GO:0030990	-	GO:0048232//male gamete generation;GO:0048869	gi|194042938|ref|XP_001929381.1|/0/PREDICTED: intraflagellar transport protein 81 homolog [Sus scrofa]
gnl|UG|Ssc#S50192005	0	0	11	3.14	3	0.9	"susfleck_FC_16_C12 SUSFLECK Fat Cell Sus scrofa cDNA clone 16_C12, mRNA sequence /clone=16_C12 /gb=FD623841 /gi=221021353 /ug=Ssc.94913 /len=774"	GO:0043231//intracellular membrane-bounded organelle	GO:0000989//transcription factor binding transcription factor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	"GO:0006952//defense response;GO:0006779//porphyrin biosynthetic process;GO:0006351//transcription, DNA-dependent;GO:0032502//developmental process"	"gi|73966224|ref|XP_864626.1|/5.10066e-123/PREDICTED: similar to nuclear factor, erythroid derived 2,-like 1 isoform 6 [Canis familiaris]"
gnl|UG|Ssc#S55244169	280	80.61	80	22.87	188	56.5	"FS673688 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010033B01 5', mRNA sequence /clone=KDN010033B01 /clone_end=5' /gb=FS673688 /gi=288236906 /ug=Ssc.9742 /len=891"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0015002//heme-copper terminal oxidase activity	-	"gi|194038646|ref|XP_001926216.1|/3.55201e-27/PREDICTED: cytochrome c oxidase subunit 5A, mitochondrial-like isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S58305116	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa testis expressed 2 (TEX2), mRNA /cds=p(93,3509) /gb=XM_003131281 /gi=311266946 /ug=Ssc.39173 /len=4940"	GO:0031224//intrinsic to membrane	-	GO:0023052//signaling;GO:0006643//membrane lipid metabolic process	gi|311266947|ref|XP_003131329.1|/0/PREDICTED: testis-expressed sequence 2 protein-like [Sus scrofa]
gnl|UG|Ssc#S23764067	0	0	7	2	0	0	"1121823 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN121686 /gi=59815965 /ug=Ssc.87204 /len=819"	-	-	-	-
gnl|UG|Ssc#S6089998	44	12.67	18	5.15	25	7.51	"Sus scrofa glutaminase mRNA, partial cds /cds=p(1,1297) /gb=AF490841 /gi=19919837 /ug=Ssc.40305 /len=3700"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016811//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"	GO:0050877//neurological system process;GO:0050896//response to stimulus;GO:0006541//glutamine metabolic process;GO:0007267//cell-cell signaling	gi|19919838|gb|AAM08402.1|AF490841_1/0/glutaminase [Sus scrofa]
gnl|UG|Ssc#S17510976	2	0.58	0	0	3	0.9	"BX666438 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0008.f.07 3prim, mRNA sequence /clone=scag0008.f.07 /clone_end=3' /gb=BX666438 /gi=90236549 /ug=Ssc.1657 /len=845"	-	-	-	gi|297286278|ref|XP_002802942.1|/2.87635e-07/PREDICTED: hypothetical protein LOC100424801 [Macaca mulatta]
gnl|UG|Ssc#S55243128	3	0.86	0	0	2	0.6	"FS667277 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10044D09 5', mRNA sequence /clone=HTMT10044D09 /clone_end=5' /gb=FS667277 /gi=288232357 /ug=Ssc.64408 /len=862"	GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction	GO:0005488//binding	GO:0065003;GO:0048193//Golgi vesicle transport;GO:0016044//cellular membrane organization;GO:0031647//regulation of protein stability;GO:0015031//protein transport	gi|423252|pir||S32369/8.27572e-143/gamma-SNAP protein - bovine
gnl|UG|Ssc#S58307470	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa WD repeat-containing protein 19-like (LOC100525651), mRNA /cds=p(138,1709) /gb=XM_003128923 /gi=311262016 /ug=Ssc.1314 /len=2228"	GO:0005815//microtubule organizing center;GO:0031513//nonmotile primary cilium	-	GO:0071842	gi|301779605|ref|XP_002925220.1|/0/PREDICTED: WD repeat-containing protein 19-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58312320	0	0	0	0	0	0	"PREDICTED: Sus scrofa F-box protein 38 (FBXO38), mRNA /cds=p(1,3870) /gb=XM_003124081 /gi=311250454 /ug=Ssc.9650 /len=4572"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311250455|ref|XP_003124129.1|/0/PREDICTED: f-box only protein 38-like [Sus scrofa]
gnl|UG|Ssc#S58309502	4	1.15	4	1.14	4	1.2	"PREDICTED: Sus scrofa adaptor-related protein complex 1, gamma 1 subunit (AP1G1), mRNA /cds=p(22,2490) /gb=XM_003126897 /gi=311257076 /ug=Ssc.41138 /len=3700"	GO:0005764//lysosome;GO:0005856//cytoskeleton;GO:0030136//clathrin-coated vesicle;GO:0030119//AP-type membrane coat adaptor complex;GO:0005768//endosome;GO:0012506//vesicle membrane;GO:0044431//Golgi apparatus part	GO:0008092//cytoskeletal protein binding;GO:0022892	GO:0007010//cytoskeleton organization;GO:0048193//Golgi vesicle transport;GO:0050688//regulation of defense response to virus;GO:0015031//protein transport	gi|301771157|ref|XP_002920998.1|/0/PREDICTED: AP-1 complex subunit gamma-1-like isoform 1 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S14901637	3	0.86	0	0	3	0.9	"jns83_H05.f jns Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CB481877 /gi=29288263 /ug=Ssc.82802 /len=633"	GO:0016021//integral to membrane	GO:0004871//signal transducer activity;GO:0004713//protein tyrosine kinase activity;GO:0032559	GO:0016477//cell migration;GO:0001525//angiogenesis;GO:0009888//tissue development;GO:0043009//chordate embryonic development;GO:0023052//signaling;GO:0006944//cellular membrane fusion;GO:0030154//cell differentiation;GO:0033189//response to vitamin A;GO:0006464//protein modification process	gi|296488838|gb|DAA30951.1|/2.0487e-127/tyrosine-protein kinase receptor Tie-1 precursor [Bos taurus]
gnl|UG|Ssc#S55318595	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:MLN010071E09, expressed in mesenteric lymph nodes /gb=AK346897 /gi=288786289 /ug=Ssc.4917 /len=1121"	GO:0031224//intrinsic to membrane	"GO:0046914//transition metal ion binding;GO:0019842//vitamin binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	GO:0008152//metabolic process	gi|76645626|ref|XP_582598.2|/1.0911e-138/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S34506985	8	2.3	6	1.72	8	2.4	"DB807499 full-length enriched swine cDNA library, adult lung Sus scrofa cDNA 3', mRNA sequence /clone=LNG010076A01 /clone_end=3' /gb=DB807499 /gi=112777941 /ug=Ssc.89738 /len=824"	-	-	-	-
gnl|UG|Ssc#S17509928	2	0.58	0	0	0	0	"BX664954 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0008.c.11 5prim, mRNA sequence /clone=scag0008.c.11 /clone_end=5' /gb=BX664954 /gi=113721104 /ug=Ssc.83647 /len=904"	-	-	-	-
gnl|UG|Ssc#S58309975	22	6.33	38	10.86	21	6.31	"PREDICTED: Sus scrofa LYR motif-containing protein 5-like, transcript variant 1 (LOC100517943), mRNA /cds=p(127,399) /gb=XM_003126425 /gi=311256033 /ug=Ssc.43947 /len=1125"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311256034|ref|XP_003126473.1|/1.25065e-41/PREDICTED: LYR motif-containing protein 5-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35169455	478	137.62	894	255.55	413	124.12	"Sus scrofa mRNA, clone:THY010014F03, expressed in thymus /gb=AK238649 /gi=115550384 /ug=Ssc.53779 /len=2196"	GO:0043234//protein complex;GO:0044429//mitochondrial part;GO:0000267//cell fraction;GO:0016020//membrane	GO:0003723//RNA binding;GO:0046872//metal ion binding;GO:0031406//carboxylic acid binding;GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0051704;GO:0006418//tRNA aminoacylation for protein translation;GO:0015960	gi|296478235|gb|DAA20350.1|/0/lysyl-tRNA synthetase [Bos taurus]
gnl|UG|Ssc#S55309729	2	0.58	0	0	4	1.2	"FS686631 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRT10003E11 5', mRNA sequence /clone=OVRT10003E11 /clone_end=5' /gb=FS686631 /gi=288243282 /ug=Ssc.95224 /len=794"	GO:0005667//transcription factor complex	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding	GO:0006383//transcription from RNA polymerase III promoter	gi|301777996|ref|XP_002924416.1|/2.4022e-85/PREDICTED: general transcription factor 3C polypeptide 5-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S5997493	0	0	3	0.86	0	0	"130011 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BE031442 /gi=8326451 /ti=447575940 /ug=Ssc.78770 /len=548"	-	-	-	gi|301760051|ref|XP_002915827.1|/5.63803e-54/PREDICTED: WD repeat-containing protein 31-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46877011	7	2.02	3	0.86	3	0.9	"PREDICTED: Sus scrofa suppressor of var1, 3-like 1 (S. cerevisiae) (SUPV3L1), mRNA /cds=p(33,2402) /gb=XM_001928898 /gi=311271304 /ug=Ssc.16551 /len=2750"	-	-	-	-
gnl|UG|Ssc#S35169910	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:LNG010094B12, expressed in lung /gb=AK232164 /gi=115549929 /ug=Ssc.80100 /len=2062"	-	-	-	gi|194036123|ref|XP_001929540.1|/1.29246e-139/PREDICTED: zinc transporter ZIP1 [Sus scrofa]
gnl|UG|Ssc#S35166782	18	5.18	46	13.15	16	4.81	"Sus scrofa mRNA, clone:THY010112C04, expressed in thymus /gb=AK239551 /gi=115552957 /ug=Ssc.42539 /len=1593"	GO:0005626//insoluble fraction;GO:0030135//coated vesicle;GO:0031234//extrinsic to internal side of plasma membrane;GO:0042995//cell projection	GO:0008047//enzyme activator activity;GO:0060089;GO:0005515//protein binding	GO:0035556//intracellular signal transduction;GO:0043087//regulation of GTPase activity;GO:0007186//G-protein coupled receptor protein signaling pathway	gi|301780658|ref|XP_002925731.1|/6.19633e-75/PREDICTED: regulator of G-protein signaling 19-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40209331	19	5.47	21	6	18	5.41	"ruio07_e17.y1 kid Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW304238 /gi=182454480 /ug=Ssc.68525 /len=689"	-	-	-	-
gnl|UG|Ssc#S50165637	2	0.58	0	0	0	0	"susfleck_PG_N_41_F11 SUSFLECK Pituitary Gland Normalized Sus scrofa cDNA clone 41_F11, mRNA sequence /clone=41_F11 /gb=FD597473 /gi=221034425 /ug=Ssc.39628 /len=405"	GO:0031981//nuclear lumen;GO:0000785//chromatin	GO:0003676//nucleic acid binding	GO:0006259//DNA metabolic process;GO:0048017//inositol lipid-mediated signaling;GO:0045638//negative regulation of myeloid cell differentiation;GO:0043486//histone exchange	"gi|242020946|ref|XP_002430908.1|/1.1422e-39/histone H4, putative [Pediculus humanus corporis]"
gnl|UG|Ssc#S58303954	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa armadillo repeat-containing protein 8-like (LOC100511228), mRNA /cds=p(13,882) /gb=XM_003132442 /gi=311269444 /ug=Ssc.29491 /len=1556"	-	-	-	gi|73990241|ref|XP_865184.1|/1.66935e-166/PREDICTED: similar to armadillo repeat containing 8 isoform 12 [Canis familiaris]
gnl|UG|Ssc#S58306681	3	0.86	31	8.86	0	0	"PREDICTED: Sus scrofa disks large homolog 2-like (LOC100516384), mRNA /cds=p(512,1603) /gb=XM_003129711 /gi=311263622 /ug=Ssc.24437 /len=2359"	GO:0044459//plasma membrane part;GO:0044430//cytoskeletal part	"GO:0005488//binding;GO:0016776//phosphotransferase activity, phosphate group as acceptor"	GO:0007600//sensory perception;GO:0007267//cell-cell signaling	gi|311263623|ref|XP_003129759.1|/0/PREDICTED: disks large homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S55322294	3	0.86	6	1.72	6	1.8	"Sus scrofa mRNA, clone:DCI010080G07, expressed in dendritic cells (immature) /gb=AK344589 /gi=288782578 /ug=Ssc.76730 /len=1627"	GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton;GO:0000777//condensed chromosome kinetochore;GO:0044444//cytoplasmic part	GO:0032559;GO:0003774//motor activity;GO:0019900//kinase binding	GO:0051234//establishment of localization;GO:0033674//positive regulation of kinase activity;GO:0007599//hemostasis;GO:0007017//microtubule-based process;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0000070//mitotic sister chromatid segregation;GO:0043623//cellular protein complex assembly;GO:0051495//positive regulation of cytoskeleton organization	"gi|296486796|gb|DAA28909.1|/0/centromere protein E, 312kDa [Bos taurus]"
gnl|UG|Ssc#S31125106	0	0	0	0	3	0.9	"1553374 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY428944 /gi=87230247 /ug=Ssc.32835 /len=649"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	"gi|149702767|ref|XP_001495540.1|/2.69959e-61/PREDICTED: nuclear transcription factor, X-box binding-like 1 [Equus caballus]"
gnl|UG|Ssc#S58314924	0	0	0	0	0	0	"PREDICTED: Sus scrofa SAFB-like transcription modulator-like (LOC100525497), mRNA /cds=p(1,1221) /gb=XM_003121481 /gi=311244656 /ug=Ssc.6760 /len=2145"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0012501//programmed cell death	gi|311244657|ref|XP_003121529.1|/8.75424e-139/PREDICTED: SAFB-like transcription modulator-like [Sus scrofa]
gnl|UG|Ssc#S35165347	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10136H08, expressed in liver /gb=AK233389 /gi=115554379 /ug=Ssc.32196 /len=1897"	GO:0031224//intrinsic to membrane;GO:0044432//endoplasmic reticulum part;GO:0031090//organelle membrane;GO:0012505//endomembrane system;GO:0042598//vesicular fraction;GO:0005634//nucleus	GO:0008047//enzyme activator activity;GO:0043021//ribonucleoprotein binding;GO:0005515//protein binding	GO:0006412//translation;GO:0051046//regulation of secretion;GO:0030162//regulation of proteolysis	"gi|73948750|ref|XP_849482.1|/0/PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 1 isoform 1 [Canis familiaris]"
gnl|UG|Ssc#S31106842	20	5.76	12	3.43	15	4.51	"1514714 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY410680 /gi=87211983 /ug=Ssc.34938 /len=732"	-	-	-	-
gnl|UG|Ssc#S46879719	9	2.59	16	4.57	11	3.31	"PREDICTED: Sus scrofa RAB2A, member RAS oncogene family (RAB2A), mRNA /cds=p(343,981) /gb=XM_001926704 /gi=311253798 /ug=Ssc.10040 /len=2217"	GO:0005626//insoluble fraction;GO:0044297//cell body;GO:0005793//ER-Golgi intermediate compartment;GO:0031090//organelle membrane;GO:0012505//endomembrane system;GO:0048770	GO:0017111//nucleoside-triphosphatase activity;GO:0004620//phospholipase activity;GO:0032561	GO:0007265//Ras protein signal transduction;GO:0009207;GO:0048193//Golgi vesicle transport;GO:0015031//protein transport	gi|311253799|ref|XP_001926739.2|/3.49703e-106/PREDICTED: ras-related protein Rab-2A [Sus scrofa]
gnl|UG|Ssc#S24663701	0	0	0	0	6	1.8	"Sus scrofa sterol regulatory element binding protein 2 (SREBP-2) mRNA, partial cds /cds=p(1,2678) /gb=DQ020476 /gi=66172461 /ug=Ssc.54221 /len=3106"	GO:0043005//neuron projection;GO:0030176//integral to endoplasmic reticulum membrane;GO:0030134//ER to Golgi transport vesicle;GO:0042598//vesicular fraction	"GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003702//RNA polymerase II transcription factor activity;GO:0003677//DNA binding;GO:0016863//intramolecular oxidoreductase activity, transposing C=C bonds"	GO:0016125//sterol metabolic process;GO:0010033//response to organic substance;GO:0010552//positive regulation of gene-specific transcription from RNA polymerase II promoter;GO:0010038//response to metal ion;GO:0048232//male gamete generation;GO:0009719;GO:0032502//developmental process	gi|66172462|gb|AAY42985.1|/0/sterol regulatory element binding protein 2 [Sus scrofa]
gnl|UG|Ssc#S58310551	3	0.86	0	0	8	2.4	"PREDICTED: Sus scrofa suppressor of tumorigenicity 7 protein-like, transcript variant 1 (LOC100519711), mRNA /cds=p(1,1668) /gb=XM_003125844 /gi=311254580 /ug=Ssc.8557 /len=1791"	GO:0031224//intrinsic to membrane	-	-	gi|311254581|ref|XP_003125892.1|/0/PREDICTED: suppressor of tumorigenicity 7 protein-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55327550	61	17.56	46	13.15	13	3.91	"Sus scrofa HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 (HACE1) mRNA, complete cds /cds=p(29,2758) /gb=GU373710 /gi=285818473 /ug=Ssc.64968 /len=3515"	GO:0043231//intracellular membrane-bounded organelle	GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination	gi|305855196|ref|NP_001182269.1|/0/E3 ubiquitin-protein ligase HACE1 [Sus scrofa]
gnl|UG|Ssc#S18268726	0	0	0	0	0	0	"BP165217 full-length enriched swine cDNA library, adult thymus Sus scrofa cDNA clone THY010074E09 5', mRNA sequence /clone=THY010074E09 /clone_end=5' /gb=BP165217 /gi=40414690 /ug=Ssc.55095 /len=801"	GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton;GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0004712//protein serine/threonine/tyrosine kinase activity;GO:0032559;GO:0004702//receptor signaling protein serine/threonine kinase activity	GO:0016049//cell growth;GO:0000165//MAPKKK cascade;GO:0006796//phosphate metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0048513//organ development;GO:0008284//positive regulation of cell proliferation;GO:0006464//protein modification process	gi|297459415|ref|XP_002700545.1|/4.2671e-135/PREDICTED: mitogen-activated protein kinase kinase 5 [Bos taurus]
gnl|UG|Ssc#S40475876	7	2.02	0	0	2	0.6	"rspc028_f12.y1 spc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW570482 /gi=183034514 /ug=Ssc.69463 /len=660"	-	-	-	-
gnl|UG|Ssc#S58307057	0	0	0	0	0	0	"PREDICTED: Sus scrofa kelch-like protein 8-like (LOC100521566), mRNA /cds=p(1,2022) /gb=XM_003129340 /gi=311262856 /ug=Ssc.43144 /len=2022"	-	-	-	gi|311262857|ref|XP_003129388.1|/0/PREDICTED: kelch-like protein 8-like [Sus scrofa]
gnl|UG|Ssc#S43134846	13	3.74	8	2.29	13	3.91	"Sus scrofa pigRAD54 mRNA for DNA repair protein RAD54, complete cds /cds=p(438,2681) /gb=AB355634 /gi=168084899 /ug=Ssc.1624 /len=2884"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0017111//nucleoside-triphosphatase activity;GO:0032559	GO:0009314//response to radiation;GO:0000725//recombinational repair;GO:0022403;GO:0042221//response to chemical stimulus;GO:0006996//organelle organization	gi|178056748|ref|NP_001116655.1|/0/DNA repair and recombination protein RAD54-like [Sus scrofa]
gnl|UG|Ssc#S21578288	38	10.94	29	8.29	34	10.22	"UMC-pd3ov3-011-c07 Oviduct gilt D3 of estrous cycle pd3ov Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO991043 /gi=51350317 /ug=Ssc.86622 /len=402"	-	-	-	-
gnl|UG|Ssc#S58306145	20	5.76	33	9.43	28	8.41	"PREDICTED: Sus scrofa pseudouridylate synthase 7 homolog (LOC100518209), mRNA /cds=p(1,1728) /gb=XM_003130259 /gi=311264715 /ug=Ssc.7592 /len=2967"	-	GO:0003676//nucleic acid binding;GO:0016866//intramolecular transferase activity	GO:0009451//RNA modification;GO:0006399//tRNA metabolic process	gi|311264716|ref|XP_003130307.1|/0/PREDICTED: pseudouridylate synthase 7 homolog [Sus scrofa]
gnl|UG|Ssc#S46877883	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa microtubule-associated tumor suppressor candidate 2-like (LOC100157816), mRNA /cds=p(339,1385) /gb=XM_001928226 /gi=311266082 /ug=Ssc.26369 /len=2306"	GO:0005815//microtubule organizing center;GO:0005874//microtubule	GO:0015631//tubulin binding;GO:0042802//identical protein binding	-	gi|194040497|ref|XP_001928261.1|/5.4142e-142/PREDICTED: microtubule-associated tumor suppressor candidate 2-like [Sus scrofa]
gnl|UG|Ssc#S18547054	15	4.32	4	1.14	21	6.31	"BX915705 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0027.h.18 5prim, mRNA sequence /clone=scan0027.h.18 /clone_end=5' /gb=BX915705 /gi=90228078 /ug=Ssc.60184 /len=708"	-	-	-	-
gnl|UG|Ssc#S35173398	0	0	0	0	0	0	"Sus scrofa mRNA, clone:AMP010069A02, expressed in alveolar macrophage /gb=AK230956 /gi=115546437 /ug=Ssc.20062 /len=2750"	GO:0044464//cell part	GO:0046914//transition metal ion binding	GO:0031348//negative regulation of defense response;GO:0010033//response to organic substance	gi|194043037|ref|XP_001924593.1|/0/PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Sus scrofa]
gnl|UG|Ssc#S46877733	3	0.86	0	0	3	0.9	"PREDICTED: Sus scrofa golgin A4 (GOLGA4), mRNA /cds=p(322,7173) /gb=XM_001925581 /gi=311268650 /ug=Ssc.8514 /len=7815"	GO:0012505//endomembrane system;GO:0044431//Golgi apparatus part	-	GO:0006810//transport	gi|311268651|ref|XP_001925616.2|/0/PREDICTED: Golgin subfamily A member 4 [Sus scrofa]
gnl|UG|Ssc#S58313585	7	2.02	0	0	0	0	"PREDICTED: Sus scrofa proteasome (prosome, macropain) 26S subunit, ATPase, 3 (PSMC3), mRNA /cds=p(194,1513) /gb=XM_003122809 /gi=311247878 /ug=Ssc.1160 /len=1624"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0016462//pyrophosphatase activity;GO:0003712//transcription cofactor activity;GO:0032559	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0051704;GO:0001701//in utero embryonic development"	gi|114637619|ref|XP_508413.2|/0/PREDICTED: proteasome 26S ATPase subunit 3 [Pan troglodytes]
gnl|UG|Ssc#S46878914	216	62.19	205	58.6	229	68.82	"PREDICTED: Sus scrofa polynucleotide adenylyltransferase, transcript variant 1 (LOC100156323), mRNA /cds=p(213,2432) /gb=XM_001929075 /gi=311261546 /ug=Ssc.5490 /len=3483"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0070566//adenylyltransferase activity;GO:0032559	"GO:0000377;GO:0031124//mRNA 3'-end processing;GO:0006353//transcription termination, DNA-dependent"	gi|297298569|ref|XP_002805247.1|/0/PREDICTED: poly(A) polymerase alpha isoform 4 [Macaca mulatta]
gnl|UG|Ssc#S55254626	77	22.17	57	16.29	37	11.12	"FS675599 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010065B08 5', mRNA sequence /clone=KDN010065B08 /clone_end=5' /gb=FS675599 /gi=288249829 /ug=Ssc.84517 /len=958"	GO:0031224//intrinsic to membrane	-	-	gi|126165222|ref|NP_001075206.1|/2.98718e-115/protein CASC4 [Bos taurus]
gnl|UG|Ssc#S58313414	0	0	0	0	0	0	"PREDICTED: Sus scrofa neutrophil elastase-like (LOC100522182), mRNA /cds=p(12,815) /gb=XM_003122986 /gi=311248221 /ug=Ssc.27066 /len=908"	GO:0016023//cytoplasmic membrane-bounded vesicle	GO:0004175//endopeptidase activity;GO:0005515//protein binding;GO:0043498//cell surface binding;GO:0005539//glycosaminoglycan binding	GO:0031348//negative regulation of defense response;GO:0009620//response to fungus;GO:0070943;GO:0002437//inflammatory response to antigenic stimulus;GO:0009057//macromolecule catabolic process;GO:0032102;GO:0008284//positive regulation of cell proliferation;GO:0006897//endocytosis;GO:0043405//regulation of MAP kinase activity;GO:0009416//response to light stimulus;GO:0002237//response to molecule of bacterial origin;GO:0002684//positive regulation of immune system process;GO:0042108//positive regulation of cytokine biosynthetic process;GO:0044126;GO:0042036//negative regulation of cytokine biosynthetic process;GO:0006875//cellular metal ion homeostasis	gi|311248222|ref|XP_003123034.1|/2.46631e-140/PREDICTED: neutrophil elastase-like [Sus scrofa]
gnl|UG|Ssc#S55266716	13	3.74	8	2.29	12	3.61	"FS669161 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10069G06 5', mRNA sequence /clone=HTMT10069G06 /clone_end=5' /gb=FS669161 /gi=288265013 /ug=Ssc.82163 /len=817"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0008238//exopeptidase activity	-	gi|119916801|ref|XP_001251030.1|/3.31649e-114/PREDICTED: nodal modulator 2 isoform 1 [Bos taurus]
gnl|UG|Ssc#S35169706	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10098A07, expressed in ovary /gb=AK235612 /gi=115550133 /ug=Ssc.11235 /len=2222"	GO:0044432//endoplasmic reticulum part	GO:0004866//endopeptidase inhibitor activity;GO:0005515//protein binding	GO:0006508//proteolysis;GO:0009059//macromolecule biosynthetic process;GO:0010466//negative regulation of peptidase activity;GO:0030198//extracellular matrix organization;GO:0006950//response to stress	gi|114051505|ref|NP_001039528.1|/0/serpin H1 precursor [Bos taurus]
gnl|UG|Ssc#S55321686	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:ITT010032G08, expressed in small intestine /gb=AK345001 /gi=288783186 /ug=Ssc.37503 /len=3076"	GO:0043231//intracellular membrane-bounded organelle	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0051707//response to other organism;GO:0019221//cytokine-mediated signaling pathway;GO:0009207;GO:0006950//response to stress	gi|90903287|gb|ABE02211.1|/0/MX2 [Sus scrofa]
gnl|UG|Ssc#S40029612	2	0.58	0	0	4	1.2	"reli1137b_k16.y1 eli Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW124519 /gi=182492885 /ug=Ssc.81973 /len=484"	GO:0016021//integral to membrane;GO:0044459//plasma membrane part;GO:0012505//endomembrane system;GO:0044424//intracellular part	GO:0008509//anion transmembrane transporter activity;GO:0008493//tetracycline transporter activity;GO:0019899//enzyme binding;GO:0015291//secondary active transmembrane transporter activity	GO:0015893//drug transport;GO:0006818//hydrogen transport;GO:0015850//organic alcohol transport;GO:0003008;GO:0006812//cation transport	"gi|194218603|ref|XP_001492590.2|/2.16709e-69/PREDICTED: similar to solute carrier family 22 (organic cation transporter), member 18 [Equus caballus]"
gnl|UG|Ssc#S50674927	3	0.86	2	0.57	0	0	"Sus scrofa C1q and tumor necrosis factor related protein 3 isoform b (C1QTNF3) mRNA, complete cds, alternatively spliced /cds=p(85,1044) /gb=EU707807 /gi=194719516 /ug=Ssc.4231 /len=3126"	-	-	-	gi|223950629|ref|NP_001138858.1|/3.66031e-152/complement C1q tumor necrosis factor-related protein 3 [Sus scrofa]
gnl|UG|Ssc#S58307197	0	0	0	0	0	0	"PREDICTED: Sus scrofa major facilitator superfamily domain containing 8 (MFSD8), mRNA /cds=p(104,1660) /gb=XM_003129199 /gi=311262571 /ug=Ssc.93983 /len=2577"	GO:0005764//lysosome;GO:0031224//intrinsic to membrane	-	GO:0009987//cellular process;GO:0006810//transport	gi|311262572|ref|XP_003129247.1|/0/PREDICTED: major facilitator superfamily domain-containing protein 8-like [Sus scrofa]
gnl|UG|Ssc#S55319998	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10044G03, expressed in liver /gb=AK346092 /gi=288784884 /ug=Ssc.10298 /len=2285"	GO:0031224//intrinsic to membrane	GO:0004930//G-protein coupled receptor activity	GO:0043009//chordate embryonic development;GO:0001501//skeletal system development	gi|71143116|ref|NP_776125.2|/0/transmembrane anterior posterior transformation protein 1 [Mus musculus]
gnl|UG|Ssc#S58303514	6	1.73	0	0	7	2.1	"PREDICTED: Sus scrofa uncharacterized protein C12orf24 homolog (LOC100513180), mRNA /cds=p(419,1189) /gb=XM_003132881 /gi=311270622 /ug=Ssc.42151 /len=1445"	-	-	-	gi|311270623|ref|XP_003132929.1|/1.40843e-139/PREDICTED: uncharacterized protein C12orf24 homolog [Sus scrofa]
gnl|UG|Ssc#S35169822	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LVR010002F10, expressed in liver /gb=AK232252 /gi=115550017 /ug=Ssc.4299 /len=2061"	GO:0044424//intracellular part	GO:0043169//cation binding;GO:0051536//iron-sulfur cluster binding;GO:0019207//kinase regulator activity;GO:0019901//protein kinase binding;GO:0003824//catalytic activity	GO:0007417//central nervous system development;GO:0008033//tRNA processing;GO:0000079//regulation of cyclin-dependent protein kinase activity;GO:0050767//regulation of neurogenesis	gi|194044464|ref|XP_001928891.1|/0/PREDICTED: CDK5 regulatory subunit-associated protein 1 [Sus scrofa]
gnl|UG|Ssc#S58303475	0	0	0	0	0	0	"PREDICTED: Sus scrofa ankyrin repeat domain-containing protein 13A-like (LOC100517784), mRNA /cds=p(1,672) /gb=XM_003132917 /gi=311270762 /ug=Ssc.92026 /len=751"	-	-	-	gi|311270763|ref|XP_003132965.1|/9.17879e-105/PREDICTED: ankyrin repeat domain-containing protein 13A-like [Sus scrofa]
gnl|UG|Ssc#S35166205	16	4.61	11	3.14	49	14.73	"Sus scrofa mRNA, clone:OVRM10223D03, expressed in ovary /gb=AK236736 /gi=115553533 /ug=Ssc.5638 /len=2109"	GO:0031981//nuclear lumen;GO:0030426//growth cone;GO:0015630//microtubule cytoskeleton;GO:0044444//cytoplasmic part	GO:0032561;GO:0005527//macrolide binding;GO:0008092//cytoskeletal protein binding;GO:0032559;GO:0035258//steroid hormone receptor binding;GO:0016859//cis-trans isomerase activity	GO:0007548//sex differentiation;GO:0018193//peptidyl-amino acid modification;GO:0030518//steroid hormone receptor signaling pathway;GO:0010975//regulation of neuron projection development;GO:0001655//urogenital system development;GO:0031109//microtubule polymerization or depolymerization;GO:0008104//protein localization;GO:0043623//cellular protein complex assembly;GO:0000041//transition metal ion transport	gi|305855148|ref|NP_001182266.1|/0/peptidyl-prolyl cis-trans isomerase FKBP4 [Sus scrofa]
gnl|UG|Ssc#S58309642	0	0	0	0	0	0	"PREDICTED: Sus scrofa zinc finger, DHHC-type containing 17 (ZDHHC17), mRNA /cds=p(1,1827) /gb=XM_003126757 /gi=311256782 /ug=Ssc.26697 /len=2152"	GO:0031224//intrinsic to membrane;GO:0000139//Golgi membrane;GO:0031982//vesicle	GO:0046914//transition metal ion binding;GO:0060089;GO:0016409//palmitoyltransferase activity;GO:0046873//metal ion transmembrane transporter activity	GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0006497//protein lipidation;GO:0070838//divalent metal ion transport;GO:0015031//protein transport	gi|311256783|ref|XP_003126805.1|/0/PREDICTED: palmitoyltransferase ZDHHC17-like [Sus scrofa]
gnl|UG|Ssc#S35165908	3250	935.69	1505	430.2	3095	930.13	"Sus scrofa mRNA, clone:PBL010013E11, expressed in periphral blood mononuclear cell /gb=AK236823 /gi=115553818 /ug=Ssc.28640 /len=1808"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044297//cell body;GO:0044444//cytoplasmic part	"GO:0017111//nucleoside-triphosphatase activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561"	GO:0006412//translation;GO:0009207;GO:0043066//negative regulation of apoptosis	gi|4503471|ref|NP_001393.1|/0/elongation factor 1-alpha 1 [Homo sapiens]
gnl|UG|Ssc#S55326546	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10065G02, expressed in ovary /gb=AK348105 /gi=288778280 /ug=Ssc.22685 /len=2529"	GO:0044424//intracellular part	GO:0005488//binding	GO:0006950//response to stress;GO:0042593//glucose homeostasis;GO:0007243//intracellular protein kinase cascade	gi|281427384|ref|NP_001163989.1|/0/suppressor of cytokine signaling 6 [Sus scrofa]
gnl|UG|Ssc#S43945732	0	0	0	0	5	1.5	"Sus scrofa small calcium-binding mitochondrial carrier 3 (SCAMC-3) mRNA, complete cds; nuclear gene for mitochondrial product /cds=p(1,1389) /gb=EU617321 /gi=186886353 /ug=Ssc.37867 /len=1389"	GO:0019866//organelle inner membrane;GO:0031012//extracellular matrix;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0046872//metal ion binding	GO:0006810//transport;GO:0023052//signaling	gi|186886354|gb|ACC93576.1|/0/small calcium-binding mitochondrial carrier 3 [Sus scrofa]
gnl|UG|Ssc#S58305708	17	4.89	3	0.86	9	2.7	"PREDICTED: Sus scrofa topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase (TOPORS), mRNA /cds=p(1,3249) /gb=XM_003130690 /gi=311265611 /ug=Ssc.43548 /len=3890"	GO:0016604//nuclear body	GO:0003676//nucleic acid binding;GO:0046872//metal ion binding;GO:0019899//enzyme binding;GO:0019787//small conjugating protein ligase activity	GO:0006511//ubiquitin-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation;GO:0033554//cellular response to stress;GO:0008629//induction of apoptosis by intracellular signals	gi|311265612|ref|XP_003130738.1|/0/PREDICTED: e3 ubiquitin-protein ligase Topors-like [Sus scrofa]
gnl|UG|Ssc#S58302338	4538	1306.51	1125	321.58	5055	1519.16	"PREDICTED: Sus scrofa nucleophosmin-like, transcript variant 1 (LOC100525313), mRNA /cds=p(127,1011) /gb=XM_003134057 /gi=311273929 /ug=Ssc.16735 /len=1360"	-	-	-	-
gnl|UG|Ssc#S58312871	19	5.47	25	7.15	12	3.61	"PREDICTED: Sus scrofa regulator of nonsense transcripts 1-like (LOC100524306), mRNA /cds=p(1,3351) /gb=XM_003123528 /gi=311249324 /ug=Ssc.33078 /len=3351"	GO:0044427;GO:0030529//ribonucleoprotein complex	GO:0003724//RNA helicase activity;GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0032559	GO:0006415//translational termination;GO:0000956//nuclear-transcribed mRNA catabolic process;GO:0006259//DNA metabolic process;GO:0009207;GO:0006405//RNA export from nucleus	gi|311249325|ref|XP_003123576.1|/0/PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts 1-like [Sus scrofa]
gnl|UG|Ssc#S58306179	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa semaphorin-3A-like (LOC100523915), mRNA /cds=p(1,2121) /gb=XM_003130219 /gi=311264645 /ug=Ssc.27381 /len=2121"	GO:0043005//neuron projection;GO:0044421//extracellular region part	GO:0004871//signal transducer activity	GO:0010631//epithelial cell migration;GO:0008016//regulation of heart contraction;GO:0012501//programmed cell death;GO:0060600;GO:0023052//signaling;GO:0006935//chemotaxis;GO:0030517//negative regulation of axon extension	gi|311264646|ref|XP_003130267.1|/0/PREDICTED: semaphorin-3A-like [Sus scrofa]
gnl|UG|Ssc#S39834117	5	1.44	7	2	6	1.8	"rche23_c22.y1 che Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV929395 /gi=178509423 /ug=Ssc.71162 /len=464"	-	-	-	-
gnl|UG|Ssc#S58315222	0	0	0	0	0	0	"PREDICTED: Sus scrofa Abelson helper integration site 1 (AHI1), mRNA /cds=p(382,3891) /gb=XM_003121183 /gi=311243885 /ug=Ssc.47699 /len=4154"	GO:0042995//cell projection;GO:0005815//microtubule organizing center;GO:0070161	-	-	gi|311243886|ref|XP_003121231.1|/0/PREDICTED: jouberin-like [Sus scrofa]
gnl|UG|Ssc#S35168589	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:LVR010063F03, expressed in liver /gb=AK232534 /gi=115551101 /ug=Ssc.17030 /len=2443"	-	-	-	-
gnl|UG|Ssc#S19546517	6	1.73	4	1.14	5	1.5	"952063 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN162657 /gi=46177087 /ug=Ssc.18619 /len=840"	-	-	-	gi|297711039|ref|XP_002832170.1|/3.34583e-16/PREDICTED: hypothetical protein LOC100443863 [Pongo abelii]
gnl|UG|Ssc#S26434628	0	0	0	0	3	0.9	"AJ938757 CSEQRAN17 Sus scrofa cDNA clone C0007318c02 3', mRNA sequence /clone=C0007318c02 /clone_end=3' /gb=AJ938757 /gi=72285384 /ug=Ssc.34335 /len=696"	-	GO:0005488//binding;GO:0016874//ligase activity	GO:0008152//metabolic process	gi|149702726|ref|XP_001492560.1|/4.03532e-109/PREDICTED: similar to putative non-ribosomal peptide synthetase NRPS1098; hNRPS1098 [Equus caballus]
gnl|UG|Ssc#S46877081	12	3.45	0	0	8	2.4	"PREDICTED: Sus scrofa DNA-directed RNA polymerase III subunit RPC1-like (LOC100156229), mRNA /cds=p(1,4173) /gb=XM_001929360 /gi=311271417 /ug=Ssc.27945 /len=4719"	GO:0044451//nucleoplasm part	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0034062//RNA polymerase activity;GO:0001882//nucleoside binding	"GO:0006952//defense response;GO:0051707//response to other organism;GO:0032481//positive regulation of type I interferon production;GO:0006353//transcription termination, DNA-dependent;GO:0006354//transcription elongation, DNA-dependent"	gi|194042171|ref|XP_001929395.1|/0/PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Sus scrofa]
gnl|UG|Ssc#S58302542	4	1.15	5	1.43	6	1.8	"PREDICTED: Sus scrofa myosin (LOC396902), mRNA /cds=p(444,6611) /gb=XM_003133852 /gi=311273511 /ug=Ssc.16318 /len=7027"	-	-	-	-
gnl|UG|Ssc#S35167897	55	15.83	18	5.15	24	7.21	"Sus scrofa mRNA, clone:OVRM10168C03, expressed in ovary /gb=AK236249 /gi=115551842 /ug=Ssc.16660 /len=2700"	-	-	-	-
gnl|UG|Ssc#S6060347	12	3.45	41	11.72	23	6.91	"MI-P-AY0-neu-g-11-0-UI.s1 MI-P-AY0 Sus scrofa cDNA clone MI-P-AY0-neu-g-11-0-UI 3', mRNA sequence /clone=MI-P-AY0-neu-g-11-0-UI /clone_end=3' /gb=BF709710 /gi=12009187 /ug=Ssc.81564 /len=395"	-	-	-	-
gnl|UG|Ssc#S39986851	51	14.68	75	21.44	34	10.22	"rebs21c_d20.y1 ebs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW081916 /gi=181217897 /ug=Ssc.66932 /len=615"	-	-	-	-
gnl|UG|Ssc#S40164048	76	21.88	133	38.02	53	15.93	"rill320b_c4.y1 ill Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW258955 /gi=182533059 /ug=Ssc.91590 /len=628"	-	-	-	-
gnl|UG|Ssc#S35170270	18	5.18	4	1.14	11	3.31	"Sus scrofa mRNA, clone:TCH010094A12, expressed in trachea /gb=AK238377 /gi=115549569 /ug=Ssc.57257 /len=1109"	GO:0030427//site of polarized growth;GO:0043231//intracellular membrane-bounded organelle;GO:0044297//cell body;GO:0005578//proteinaceous extracellular matrix;GO:0042995//cell projection	GO:0070011;GO:0005102//receptor binding;GO:0043169//cation binding;GO:0004866//endopeptidase inhibitor activity	GO:0032486//Rap protein signal transduction;GO:0045597//positive regulation of cell differentiation;GO:0046578//regulation of Ras protein signal transduction;GO:0030162//regulation of proteolysis;GO:0010033//response to organic substance;GO:0008283//cell proliferation;GO:0046058//cAMP metabolic process;GO:0050767//regulation of neurogenesis;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0048232//male gamete generation;GO:0007346//regulation of mitotic cell cycle;GO:0031281;GO:0010466//negative regulation of peptidase activity	gi|225543674|ref|NP_001139457.1|/2.85019e-107/metalloproteinase inhibitor 2 [Sus scrofa]
gnl|UG|Ssc#S46878674	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa DDB1- and CUL4-associated factor 11-like, transcript variant 1 (LOC100157270), mRNA /cds=p(721,2361) /gb=XM_001928359 /gi=311260970 /ug=Ssc.26086 /len=3201"	GO:0031461//cullin-RING ubiquitin ligase complex	GO:0005488//binding	GO:0032446//protein modification by small protein conjugation	gi|194038868|ref|XP_001928394.1|/0/PREDICTED: DDB1- and CUL4-associated factor 11-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S50199521	8	2.3	4	1.14	8	2.4	"susfleck_FC_N_19_E10 SUSFLECK Fat Cell Normalized Sus scrofa cDNA clone 19_E10, mRNA sequence /clone=19_E10 /gb=FD631357 /gi=221002141 /ug=Ssc.75213 /len=769"	GO:0043234//protein complex;GO:0043232;GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	-	"GO:0006351//transcription, DNA-dependent;GO:0051707//response to other organism;GO:0006396//RNA processing"	gi|297662497|ref|XP_002809738.1|/1.41229e-47/PREDICTED: influenza virus NS1A-binding protein-like isoform 1 [Pongo abelii]
gnl|UG|Ssc#S31126985	5	1.44	6	1.72	4	1.2	"1555462 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY430823 /gi=87232126 /ug=Ssc.87938 /len=623"	GO:0044464//cell part	GO:0005099//Ras GTPase activator activity	GO:0032318//regulation of Ras GTPase activity	gi|301777856|ref|XP_002924345.1|/2.24645e-86/PREDICTED: TBC1 domain family member 19-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58307910	17	4.89	4	1.14	27	8.11	"PREDICTED: Sus scrofa S-phase cyclin A-associated protein in the ER (SCAPER), mRNA /cds=p(1,3825) /gb=XM_003128482 /gi=311260765 /ug=Ssc.47600 /len=4826"	"GO:0000775//chromosome, centromeric region;GO:0070822//Sin3-type complex"	GO:0005515//protein binding;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding	GO:0007599//hemostasis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0051325//interphase;GO:0006259//DNA metabolic process;GO:0043009//chordate embryonic development;GO:0006629//lipid metabolic process;GO:0008104//protein localization;GO:0006915//apoptosis;GO:0034599//cellular response to oxidative stress	gi|311260766|ref|XP_003128530.1|/0/PREDICTED: paired amphipathic helix protein Sin3a [Sus scrofa]
gnl|UG|Ssc#S58311294	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100522608 (LOC100522608), mRNA /cds=p(69,149) /gb=XM_003125104 /gi=311252556 /ug=Ssc.84613 /len=1145"	-	-	-	gi|297266075|ref|XP_002799305.1|/3.51397e-15/PREDICTED: uncharacterized protein KIAA1841-like [Macaca mulatta]
gnl|UG|Ssc#S36126910	117	33.68	130	37.16	97	29.15	"Sus scrofa jumonji AT-rich interactive domain 1C (JARID1C) mRNA, complete cds /cds=p(523,5073) /gb=EF139241 /gi=119394690 /ug=Ssc.25162 /len=5908"	GO:0043231//intracellular membrane-bounded organelle	"GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen"	"GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|147903481|ref|NP_001090902.1|/0/lysine-specific demethylase 5C [Sus scrofa]
gnl|UG|Ssc#S58305378	13	3.74	0	0	5	1.5	"PREDICTED: Sus scrofa DIS3 mitotic control homolog (S. cerevisiae) (DIS3), mRNA /cds=p(4,1266) /gb=XM_003131019 /gi=311266371 /ug=Ssc.14206 /len=1426"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0030695//GTPase regulator activity;GO:0003676//nucleic acid binding;GO:0008408//3'-5' exonuclease activity	"GO:0000291//nuclear-transcribed mRNA catabolic process, exonucleolytic;GO:0042254//ribosome biogenesis;GO:0034661;GO:0016072//rRNA metabolic process"	gi|311266372|ref|XP_003131067.1|/0/PREDICTED: exosome complex exonuclease RRP44-like [Sus scrofa]
gnl|UG|Ssc#S23016575	13	3.74	12	3.43	16	4.81	"Sus scrofa cAMP responsive element binding protein 1 (CREB1) mRNA, complete cds /cds=p(10,993) /gb=AY862387 /gi=57546151 /ug=Ssc.80814 /len=1000"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0000785//chromatin	GO:0000989//transcription factor binding transcription factor activity;GO:0043566//structure-specific DNA binding;GO:0005515//protein binding;GO:0003702//RNA polymerase II transcription factor activity;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity	GO:0051704;GO:0006915//apoptosis;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0048017//inositol lipid-mediated signaling;GO:0048732//gland development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0010863//positive regulation of phospholipase C activity;GO:0006464//protein modification process;GO:0035264//multicellular organism growth;GO:0007589//body fluid secretion;GO:0021536//diencephalon development;GO:0006935//chemotaxis;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0070848//response to growth factor stimulus;GO:0046879//hormone secretion;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0007623//circadian rhythm;GO:0002224//toll-like receptor signaling pathway;GO:0032907;GO:0000165//MAPKKK cascade;GO:0032535	gi|153792683|ref|NP_001093399.1|/8.09954e-143/cyclic AMP-responsive element-binding protein 1 [Sus scrofa]
gnl|UG|Ssc#S29970977	168	48.37	190	54.31	247	74.23	"PDUts1045C11 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1045C11 5' similar to homologue to ref|NM_006334.2| Homo sapiens olfactomedin 1 (OLFM1), transcript variant 2, mRNA, mRNA sequence /clone=PDUts1045C11 /clone_end=5' /gb=CV867635 /gi=84121595 /ug=Ssc.75049 /len=665"	GO:0044421//extracellular region part;GO:0044432//endoplasmic reticulum part	GO:0005488//binding	GO:0006461//protein complex assembly;GO:0048731	gi|90075030|dbj|BAE87195.1|/5.25638e-55/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S20938613	372	107.1	857	244.97	379	113.9	"AJ650336 CSEQRAN19 Sus scrofa cDNA clone C0003275_B08, mRNA sequence /clone=C0003275_B08 /gb=AJ650336 /gi=49327181 /ug=Ssc.74047 /len=499"	GO:0015934//large ribosomal subunit	GO:0042802//identical protein binding;GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0042254//ribosome biogenesis;GO:0006412//translation	gi|206736|gb|AAA42075.1|/5.62898e-71/ribosomal protein L7 [Rattus norvegicus]
gnl|UG|Ssc#S18379654	3	0.86	0	0	3	0.9	"929993 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK459775 /gi=40831056 /ug=Ssc.84661 /len=886"	GO:0012505//endomembrane system;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0044444//cytoplasmic part;GO:0005626//insoluble fraction	GO:0046872//metal ion binding;GO:0015924	GO:0006487//protein N-linked glycosylation	"gi|47522710|ref|NP_999050.1|/2.40583e-84/mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [Sus scrofa]"
gnl|UG|Ssc#S58315169	27	7.77	16	4.57	34	10.22	"PREDICTED: Sus scrofa gap junction alpha-1 protein-like (LOC100518636), mRNA /cds=p(179,1327) /gb=XM_003121236 /gi=311244026 /ug=Ssc.1357 /len=3077"	GO:0000323//lytic vacuole;GO:0005921//gap junction;GO:0005626//insoluble fraction;GO:0031966//mitochondrial membrane;GO:0000139//Golgi membrane;GO:0016021//integral to membrane;GO:0005913//cell-cell adherens junction;GO:0005770//late endosome	GO:0060089;GO:0019904//protein domain specific binding;GO:0022829//wide pore channel activity	GO:0006461//protein complex assembly;GO:0010467//gene expression;GO:0016202//regulation of striated muscle tissue development;GO:0002064//epithelial cell development;GO:0010959//regulation of metal ion transport;GO:0044057;GO:0048858//cell projection morphogenesis;GO:0009628//response to abiotic stimulus;GO:0043009//chordate embryonic development;GO:0015868//purine ribonucleotide transport;GO:0016477//cell migration;GO:0009896;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0042246//tissue regeneration;GO:0008283//cell proliferation;GO:0003143//embryonic heart tube morphogenesis;GO:0007043//cell-cell junction assembly;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0007154//cell communication;GO:0009725//response to hormone stimulus;GO:0012501//programmed cell death	gi|33286888|gb|AAH55375.1|/0/Gja1 protein [Mus musculus]
gnl|UG|Ssc#S46876330	2	0.58	0	0	5	1.5	"PREDICTED: Sus scrofa TRAF3-interacting protein 1-like (LOC100152982), mRNA /cds=p(400,1341) /gb=XM_001928310 /gi=311273348 /ug=Ssc.39032 /len=1439"	GO:0005856//cytoskeleton;GO:0044444//cytoplasmic part	GO:0015631//tubulin binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0042505;GO:0051098//regulation of binding	gi|311273349|ref|XP_001928345.2|/1.10186e-160/PREDICTED: TRAF3-interacting protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58307917	39	11.23	197	56.31	74	22.24	"PREDICTED: Sus scrofa electron-transfer-flavoprotein, alpha polypeptide, transcript variant 2 (ETFA), mRNA /cds=p(117,1154) /gb=XM_003128487 /gi=311260738 /ug=Ssc.9992 /len=1427"	GO:0005759//mitochondrial matrix	GO:0050662//coenzyme binding;GO:0003824//catalytic activity	GO:0051234//establishment of localization;GO:0022900//electron transport chain	"gi|311260739|ref|XP_003128535.1|/0/PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial isoform 2 [Sus scrofa]"
gnl|UG|Ssc#S14888347	85	24.47	21	6	49	14.73	"sn13_C11.f sn Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CB469892 /gi=29276277 /ug=Ssc.11278 /len=616"	-	-	-	-
gnl|UG|Ssc#S46876463	10	2.88	3	0.86	4	1.2	"PREDICTED: Sus scrofa ubiquitin fusion degradation 1 like (yeast) (UFD1L), mRNA /cds=p(126,1049) /gb=XM_001929622 /gi=311271093 /ug=Ssc.1973 /len=1924"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0019783//small conjugating protein-specific protease activity;GO:0005515//protein binding	GO:0048731;GO:0019941//modification-dependent protein catabolic process	gi|194043450|ref|XP_001929657.1|/1.05939e-172/PREDICTED: ubiquitin fusion degradation protein 1 homolog [Sus scrofa]
gnl|UG|Ssc#S58315247	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa syntaxin binding protein 5 (tomosyn), transcript variant 2 (STXBP5), mRNA /cds=p(1,3456) /gb=XM_003121150 /gi=311243816 /ug=Ssc.59433 /len=3456"	GO:0005887//integral to plasma membrane;GO:0030136//clathrin-coated vesicle;GO:0012506//vesicle membrane	GO:0019905//syntaxin binding	GO:0016192//vesicle-mediated transport	gi|311243817|ref|XP_003121198.1|/0/PREDICTED: syntaxin-binding protein 5 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58313864	28	8.06	42	12.01	33	9.92	"PREDICTED: Sus scrofa pecanex-like 3 (Drosophila) (PCNXL3), mRNA /cds=p(1,5718) /gb=XM_003122557 /gi=311247301 /ug=Ssc.28684 /len=6155"	GO:0031224//intrinsic to membrane	-	-	gi|311247302|ref|XP_003122605.1|/0/PREDICTED: pecanex-like protein 3-like [Sus scrofa]
gnl|UG|Ssc#S22415851	9	2.59	40	11.43	0	0	"Sus scrofa Wilms tumor 1 (WT1), mRNA /cds=p(254,1603) /gb=NM_001001264 /gi=55741850 /ug=Ssc.20977 /len=2083"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0019904//protein domain specific binding;GO:0043565//sequence-specific DNA binding;GO:0043566//structure-specific DNA binding;GO:0016564//transcription repressor activity	GO:0061318;GO:0032583//regulation of gene-specific transcription;GO:0072050;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0030198//extracellular matrix organization;GO:0006412//translation;GO:0003382//epithelial cell morphogenesis;GO:0008585//female gonad development;GO:0008584//male gonad development;GO:0072164//mesonephric tubule development;GO:0006396//RNA processing;GO:0001654//eye development;GO:0006915//apoptosis;GO:0012502//induction of programmed cell death;GO:0048754//branching morphogenesis of a tube;GO:0016049//cell growth;GO:0035270//endocrine system development;GO:0072125//negative regulation of glomerular mesangial cell proliferation	gi|37978|emb|CAA35956.1|/0/Krueppel-like zinc-finger protein [Homo sapiens]
gnl|UG|Ssc#S6049157	2	0.58	0	0	0	0	"389117 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BI467498 /gi=15280376 /ti=470954469 /ug=Ssc.81207 /len=562"	GO:0043231//intracellular membrane-bounded organelle	GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|5305333|gb|AAD41593.1|AF071071_1/3.09088e-83/protein kinase Myak-S [Mus musculus] 
gnl|UG|Ssc#S35172212	0	0	7	2	0	0	"Sus scrofa mRNA, clone:ITT010029C08, expressed in intestine /gb=AK231281 /gi=115547623 /ug=Ssc.37206 /len=992"	GO:0043231//intracellular membrane-bounded organelle	"GO:0008047//enzyme activator activity;GO:0043169//cation binding;GO:0019899//enzyme binding;GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0019222//regulation of metabolic process;GO:0035556//intracellular signal transduction;GO:0006468//protein phosphorylation	gi|27735029|ref|NP_775739.1|/1.67176e-124/mps one binder kinase activator-like 1A [Homo sapiens]
gnl|UG|Ssc#S35170472	4	1.15	2	0.57	3	0.9	"Sus scrofa mRNA, clone:OVRM10075G01, expressed in ovary /gb=AK235389 /gi=115549367 /ug=Ssc.52696 /len=2492"	-	-	-	"gi|119584365|gb|EAW63961.1|/1.85578e-111/hCG1759124, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S35165922	3	0.86	0	0	3	0.9	"Sus scrofa mRNA, clone:PBL010010E06, expressed in periphral blood mononuclear cell /gb=AK236809 /gi=115553804 /ug=Ssc.4737 /len=1064"	GO:0012506//vesicle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0044444//cytoplasmic part	GO:0001595//angiotensin receptor activity	GO:0008015//blood circulation;GO:0006950//response to stress	gi|311258466|ref|XP_003127621.1|/1.44107e-76/PREDICTED: type-1 angiotensin II receptor-associated protein-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58308844	139	40.02	96	27.44	178	53.49	"PREDICTED: Sus scrofa ubiquitin conjugation factor E4 B-like (LOC100520964), mRNA /cds=p(31,372) /gb=XM_003127554 /gi=311258414 /ug=Ssc.5222 /len=1698"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0004842//ubiquitin-protein ligase activity;GO:0005515//protein binding	GO:0012501//programmed cell death;GO:0055010//ventricular cardiac muscle tissue morphogenesis;GO:0030030//cell projection organization;GO:0009416//response to light stimulus;GO:0033554//cellular response to stress;GO:0019941//modification-dependent protein catabolic process;GO:0016567//protein ubiquitination	"gi|194208071|ref|XP_001915350.1|/5.8843e-63/PREDICTED: ubiquitination factor E4B (UFD2 homolog, yeast) isoform 1 [Equus caballus]"
gnl|UG|Ssc#S18356090	2	0.58	6	1.72	2	0.6	"904721 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK451535 /gi=40798749 /ug=Ssc.19274 /len=855"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0003677//DNA binding;GO:0046983//protein dimerization activity	"GO:0045596//negative regulation of cell differentiation;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0030097//hemopoiesis;GO:0006355//regulation of transcription, DNA-dependent;GO:0002088//lens development in camera-type eye"	"gi|119620299|gb|EAW99893.1|/2.59983e-64/Meis1, myeloid ecotropic viral integration site 1 homolog (mouse), isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S55319630	134	38.58	34	9.72	93	27.95	"Sus scrofa mRNA, clone:LVRM10123B01, expressed in liver /gb=AK346261 /gi=288785254 /ug=Ssc.32215 /len=961"	GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0004672//protein kinase activity;GO:0019207//kinase regulator activity;GO:0005515//protein binding	GO:0016055//Wnt receptor signaling pathway;GO:0007243//intracellular protein kinase cascade;GO:0019222//regulation of metabolic process;GO:0006935//chemotaxis;GO:0019221//cytokine-mediated signaling pathway;GO:0006461//protein complex assembly;GO:0016310//phosphorylation;GO:0051098//regulation of binding;GO:0008283//cell proliferation	"gi|73972260|ref|XP_532075.2|/8.42341e-126/PREDICTED: similar to casein kinase 2, beta subunit [Canis familiaris]"
gnl|UG|Ssc#S35164008	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:UTR010057E05, expressed in uterus /gb=AK240348 /gi=115555718 /ug=Ssc.53896 /len=1580"	GO:0005884//actin filament;GO:0032432//actin filament bundle;GO:0000267//cell fraction;GO:0030017//sarcomere	GO:0005198//structural molecule activity;GO:0017111//nucleoside-triphosphatase activity;GO:0008092//cytoskeletal protein binding;GO:0032559	GO:0006941//striated muscle contraction;GO:0060415;GO:0030048//actin filament-based movement;GO:0012501//programmed cell death;GO:0051707//response to other organism;GO:0010033//response to organic substance;GO:0008015//blood circulation;GO:0048747//muscle fiber development;GO:0030239//myofibril assembly;GO:0009207;GO:0007015//actin filament organization;GO:0006939//smooth muscle contraction;GO:0003015//heart process	"gi|297301436|ref|XP_002805788.1|/0/PREDICTED: actin, aortic smooth muscle-like isoform 1 [Macaca mulatta]"
gnl|UG|Ssc#S58313516	8	2.3	6	1.72	2	0.6	"PREDICTED: Sus scrofa homeodomain interacting protein kinase 3 (HIPK3), mRNA /cds=p(1,3564) /gb=XM_003122898 /gi=311248016 /ug=Ssc.47027 /len=3663"	GO:0016604//nuclear body	GO:0004672//protein kinase activity;GO:0032559	GO:0043407//negative regulation of MAP kinase activity;GO:0043066//negative regulation of apoptosis	gi|311248017|ref|XP_003122946.1|/0/PREDICTED: homeodomain-interacting protein kinase 3-like [Sus scrofa]
gnl|UG|Ssc#S58309157	2	0.58	0	0	8	2.4	"PREDICTED: Sus scrofa solute carrier family 1 (neutral amino acid transporter), member 5, transcript variant 1 (SLC1A5), mRNA /cds=p(655,2280) /gb=XM_003127237 /gi=311257778 /ug=Ssc.43023 /len=2863"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane	GO:0005488//binding;GO:0015171//amino acid transmembrane transporter activity;GO:0015291//secondary active transmembrane transporter activity	GO:0055085//transmembrane transport;GO:0006811//ion transport;GO:0006807//nitrogen compound metabolic process;GO:0006865//amino acid transport	gi|311257779|ref|XP_003127285.1|/0/PREDICTED: neutral amino acid transporter B(0) isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46879854	3	0.86	4	1.14	6	1.8	"PREDICTED: Sus scrofa vang-like 1 (van gogh, Drosophila) (VANGL1), mRNA /cds=p(1,1575) /gb=XM_001929540 /gi=194036410 /ug=Ssc.43802 /len=1612"	GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0032501//multicellular organismal process	gi|194036411|ref|XP_001929575.1|/0/PREDICTED: vang-like protein 1 [Sus scrofa]
gnl|UG|Ssc#S46880176	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa protein Dr1-like (LOC100152776), mRNA /cds=p(217,747) /gb=XM_001928479 /gi=311254773 /ug=Ssc.5433 /len=2990"	GO:0000123//histone acetyltransferase complex	GO:0003712//transcription cofactor activity;GO:0003677//DNA binding;GO:0008134//transcription factor binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0016573//histone acetylation	gi|194035744|ref|XP_001928514.1|/1.61139e-56/PREDICTED: protein Dr1-like [Sus scrofa]
gnl|UG|Ssc#S46880975	0	0	0	0	0	0	"PREDICTED: Sus scrofa tudor domain containing 7 (TDRD7), mRNA /cds=p(1,3297) /gb=XM_001924680 /gi=311246079 /ug=Ssc.17902 /len=3544"	GO:0043232;GO:0030529//ribonucleoprotein complex;GO:0044429//mitochondrial part	GO:0005515//protein binding	GO:0003006//developmental process involved in reproduction	gi|194034061|ref|XP_001924715.1|/0/PREDICTED: tudor domain-containing protein 7-like [Sus scrofa]
gnl|UG|Ssc#S34517161	0	0	0	0	0	0	"DB787255 full-length enriched swine cDNA library, adult adrenal gland Sus scrofa cDNA clone ADR010065A10 5', mRNA sequence /clone=ADR010065A10 /clone_end=5' /gb=DB787255 /gi=112776045 /ug=Ssc.62201 /len=826"	-	-	-	-
gnl|UG|Ssc#S55324077	5	1.44	9	2.57	12	3.61	"Sus scrofa mRNA, clone:SMG010097B05, expressed in submaxillary gland /gb=AK350131 /gi=288780795 /ug=Ssc.3255 /len=1306"	-	-	-	-
gnl|UG|Ssc#S50196091	0	0	0	0	0	0	"susfleck_FC_N_10_D10 SUSFLECK Fat Cell Normalized Sus scrofa cDNA clone 10_D10, mRNA sequence /clone=10_D10 /gb=FD627927 /gi=221013695 /ug=Ssc.88786 /len=786"	GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding;GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0070646;GO:0019941//modification-dependent protein catabolic process	gi|301776002|ref|XP_002923425.1|/6.79952e-154/PREDICTED: ubiquitin carboxyl-terminal hydrolase 32-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46880065	99	28.5	136	38.88	61	18.33	"PREDICTED: Sus scrofa proline-rich protein PRCC-like, transcript variant 1 (LOC100154743), mRNA /cds=p(219,1694) /gb=XM_001924343 /gi=311254094 /ug=Ssc.12110 /len=2070"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0000075//cell cycle checkpoint	gi|194035971|ref|XP_001924378.1|/1.57832e-153/PREDICTED: proline-rich protein PRCC-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58304520	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa MYB binding protein (P160) 1a (MYBBP1A), mRNA /cds=p(1,4041) /gb=XM_003131871 /gi=311268172 /ug=Ssc.32497 /len=4041"	GO:0031074//nucleocytoplasmic shuttling complex;GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0005515//protein binding	"GO:0022900//electron transport chain;GO:0006355//regulation of transcription, DNA-dependent;GO:0051169//nuclear transport"	gi|311268173|ref|XP_003131919.1|/0/PREDICTED: myb-binding protein 1A-like [Sus scrofa]
gnl|UG|Ssc#S29986135	2	0.58	0	0	0	0	"PDUts2048A03 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2048A03 5' similar to homologue to ref|NM_003291.1| Homo sapiens tripeptidyl peptidase II (TPP2), mRNA, mRNA sequence /clone=PDUts2048A03 /clone_end=5' /gb=CX060611 /gi=84136753 /ug=Ssc.88832 /len=532"	GO:0043231//intracellular membrane-bounded organelle	GO:0004175//endopeptidase activity;GO:0008238//exopeptidase activity;GO:0008236//serine-type peptidase activity	GO:0019538//protein metabolic process	gi|297274770|ref|XP_002800874.1|/3.13105e-100/PREDICTED: tripeptidyl-peptidase 2-like [Macaca mulatta]
gnl|UG|Ssc#S58313331	0	0	0	0	0	0	"PREDICTED: Sus scrofa signal-transducing adaptor protein 2-like (LOC100523772), mRNA /cds=p(75,1385) /gb=XM_003123065 /gi=311248391 /ug=Ssc.19148 /len=1398"	GO:0016020//membrane;GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|311248392|ref|XP_003123113.1|/0/PREDICTED: signal-transducing adaptor protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58313359	9	2.59	5	1.43	30	9.02	"PREDICTED: Sus scrofa uncharacterized MFS-type transporter C19orf28-like (LOC100519240), mRNA /cds=p(44,1633) /gb=XM_003123041 /gi=311248335 /ug=Ssc.43940 /len=1825"	GO:0031224//intrinsic to membrane	-	GO:0006810//transport	gi|311248336|ref|XP_003123089.1|/0/PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Sus scrofa]
gnl|UG|Ssc#S17525079	44	12.67	34	9.72	42	12.62	"BX674220 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0042.d.12 5prim, mRNA sequence /clone=scac0042.d.12 /clone_end=5' /gb=BX674220 /gi=90246085 /ug=Ssc.2655 /len=842"	GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0016021//integral to membrane;GO:0043234//protein complex	GO:0061135;GO:0032403//protein complex binding;GO:0019899//enzyme binding	"GO:0010952//positive regulation of peptidase activity;GO:0009888//tissue development;GO:0001541//ovarian follicle development;GO:0009967//positive regulation of signal transduction;GO:0033077//T cell differentiation in thymus;GO:0006354//transcription elongation, DNA-dependent;GO:0007281//germ cell development;GO:0043623//cellular protein complex assembly;GO:0007292//female gamete generation"	gi|301780750|ref|XP_002925780.1|/1.38895e-78/PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58304344	21	6.05	8	2.29	8	2.4	"PREDICTED: Sus scrofa calcium-transporting ATPase type 2C member 1-like (LOC100515626), mRNA /cds=p(1,2766) /gb=XM_003132054 /gi=311268538 /ug=Ssc.6541 /len=3714"	GO:0044431//Golgi apparatus part;GO:0031224//intrinsic to membrane;GO:0012505//endomembrane system	GO:0046914//transition metal ion binding;GO:0060089;GO:0019829//cation-transporting ATPase activity;GO:0032559	GO:0009888//tissue development;GO:0006874//cellular calcium ion homeostasis;GO:0006816//calcium ion transport;GO:0016337//cell-cell adhesion;GO:0030036//actin cytoskeleton organization;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0000041//transition metal ion transport;GO:0009206	gi|311268539|ref|XP_003132102.1|/0/PREDICTED: calcium-transporting ATPase type 2C member 1-like [Sus scrofa]
gnl|UG|Ssc#S55318457	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVR010044G10, expressed in ovary /gb=AK347506 /gi=288786427 /ug=Ssc.4253 /len=4043"	GO:0009986//cell surface;GO:0043234//protein complex;GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane;GO:0031012//extracellular matrix	GO:0017134//fibroblast growth factor binding;GO:0005539//glycosaminoglycan binding;GO:0005160//transforming growth factor beta receptor binding;GO:0032403//protein complex binding;GO:0019904//protein domain specific binding;GO:0005024//transforming growth factor beta receptor activity	GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0001701//in utero embryonic development;GO:0051091//positive regulation of transcription factor activity;GO:0055008//cardiac muscle tissue morphogenesis;GO:0034698//response to gonadotropin stimulus;GO:0001837//epithelial to mesenchymal transition;GO:0034694//response to prostaglandin stimulus;GO:0040007//growth;GO:0008285//negative regulation of cell proliferation;GO:0010631//epithelial cell migration;GO:0035556//intracellular signal transduction;GO:0065003;GO:0006950//response to stress;GO:0030218//erythrocyte differentiation;GO:0014855;GO:0060343;GO:0006468//protein phosphorylation;GO:0001944//vasculature development	gi|47523610|ref|NP_999437.1|/0/transforming growth factor beta receptor type 3 precursor [Sus scrofa]
gnl|UG|Ssc#S58301679	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa GRIP and coiled-coil domain containing 1 (GCC1), mRNA /cds=p(387,2714) /gb=XM_003134715 /gi=311275488 /ug=Ssc.5349 /len=3590"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|311275489|ref|XP_003134763.1|/0/PREDICTED: GRIP and coiled-coil domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S19546988	11	3.17	2	0.57	4	1.2	"952647 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN163172 /gi=46177602 /ug=Ssc.85329 /len=850"	-	-	-	gi|119587815|gb|EAW67411.1|/3.56327e-21/hCG2033193 [Homo sapiens]
gnl|UG|Ssc#S58304444	59	16.99	13	3.72	16	4.81	"PREDICTED: Sus scrofa chromodomain helicase DNA binding protein 3, transcript variant 2 (CHD3), mRNA /cds=p(1,6009) /gb=XM_003131952 /gi=311268328 /ug=Ssc.1663 /len=7310"	GO:0015630//microtubule cytoskeleton;GO:0044427;GO:0000118//histone deacetylase complex	"GO:0003678//DNA helicase activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0042623//ATPase activity, coupled;GO:0032559"	"GO:0006355//regulation of transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|311268329|ref|XP_003132000.1|/0/PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58312466	39	11.23	40	11.43	40	12.02	"PREDICTED: Sus scrofa heat shock 70kDa protein 4 (HSPA4), mRNA /cds=p(221,2743) /gb=XM_003123931 /gi=311250150 /ug=Ssc.3313 /len=4713"	-	-	-	-
gnl|UG|Ssc#S23770911	15	4.32	37	10.58	9	2.7	"1142605 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN128530 /gi=59822809 /ug=Ssc.82137 /len=818"	-	-	-	-
gnl|UG|Ssc#S46877158	4	1.15	0	0	3	0.9	"PREDICTED: Sus scrofa MAX interactor 1, transcript variant 1 (MXI1), mRNA /cds=p(256,1131) /gb=XM_001925277 /gi=311271824 /ug=Ssc.19163 /len=3525"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0005488//binding;GO:0003712//transcription cofactor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0042992//negative regulation of transcription factor import into nucleus;GO:0008283//cell proliferation	gi|194042014|ref|XP_001925312.1|/4.5176e-114/PREDICTED: max-interacting protein 1 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S20937824	5	1.44	3	0.86	2	0.6	"AJ649547 CSEQRAN19 Sus scrofa cDNA clone C0003272_M17, mRNA sequence /clone=C0003272_M17 /gb=AJ649547 /gi=49326392 /ug=Ssc.85609 /len=536"	GO:0043231//intracellular membrane-bounded organelle	GO:0003824//catalytic activity	-	"gi|157823711|ref|NP_001101354.1|/3.18696e-100/cat eye syndrome chromosome region, candidate 5 homolog [Rattus norvegicus] "
gnl|UG|Ssc#S18377732	2	0.58	0	0	0	0	"922180 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK457845 /gi=40829126 /ug=Ssc.16617 /len=713"	-	-	-	-
gnl|UG|Ssc#S58306660	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa frizzled homolog 4 (Drosophila) (FZD4), mRNA /cds=p(1,1614) /gb=XM_003129729 /gi=311263665 /ug=Ssc.93759 /len=2286"	GO:0016021//integral to membrane;GO:0044424//intracellular part	GO:0046983//protein dimerization activity;GO:0019904//protein domain specific binding;GO:0042802//identical protein binding;GO:0004888//transmembrane receptor activity	GO:0007626//locomotory behavior;GO:0007417//central nervous system development;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0032526//response to retinoic acid;GO:0007162//negative regulation of cell adhesion;GO:0007154//cell communication;GO:0050954//sensory perception of mechanical stimulus;GO:0035567//non-canonical Wnt receptor signaling pathway;GO:0000904//cell morphogenesis involved in differentiation;GO:0009966//regulation of signal transduction;GO:0001553//luteinization;GO:0048514//blood vessel morphogenesis;GO:0043388//positive regulation of DNA binding	gi|311263666|ref|XP_003129777.1|/0/PREDICTED: frizzled-4-like [Sus scrofa]
gnl|UG|Ssc#S22839340	6	1.73	25	7.15	8	2.4	"Sus scrofa mRNA for lysosome-associated membrane glycoprotein 1 (LAMP=1 gene) /cds=p(1,1242) /gb=AJ620414 /gi=57282793 /ug=Ssc.16549 /len=1945"	-	-	-	-
gnl|UG|Ssc#S20116287	27	7.77	29	8.29	51	15.33	"Sus scrofa cyclin-dependent kinase inhibitor 1B (p27, Kip1) (CDKN1B), mRNA /cds=p(43,639) /gb=NM_214316 /gi=47523689 /ug=Ssc.6966 /len=1958"	GO:0031981//nuclear lumen;GO:0032991//macromolecular complex;GO:0044444//cytoplasmic part	GO:0016538//cyclin-dependent protein kinase regulator activity;GO:0019902//phosphatase binding;GO:0005057//receptor signaling protein activity;GO:0031072//heat shock protein binding	"GO:0006915//apoptosis;GO:0048017//inositol lipid-mediated signaling;GO:0050680//negative regulation of epithelial cell proliferation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050954//sensory perception of mechanical stimulus;GO:0014070//response to organic cyclic compound;GO:0016049//cell growth;GO:0030001//metal ion transport;GO:0032583//regulation of gene-specific transcription;GO:0012502//induction of programmed cell death;GO:0046677//response to antibiotic;GO:0009896;GO:0006469//negative regulation of protein kinase activity;GO:0010226//response to lithium ion;GO:0051320;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0031112;GO:0007050//cell cycle arrest;GO:0001101//response to acid;GO:0043627//response to estrogen stimulus;GO:0009746;GO:0000079//regulation of cyclin-dependent protein kinase activity;GO:0051318//G1 phase;GO:0048856//anatomical structure development"	gi|47523690|ref|NP_999481.1|/1.4899e-113/cyclin-dependent kinase inhibitor 1B [Sus scrofa]
gnl|UG|Ssc#S46876583	0	0	0	0	0	0	"PREDICTED: Sus scrofa myotubularin related protein 3 (MTMR3), mRNA /cds=p(316,3903) /gb=XM_001926519 /gi=311270918 /ug=Ssc.32010 /len=3989"	GO:0005626//insoluble fraction;GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0004721//phosphoprotein phosphatase activity	GO:0006464//protein modification process	gi|311270919|ref|XP_001926554.2|/0/PREDICTED: myotubularin-related protein 3-like [Sus scrofa]
gnl|UG|Ssc#S55320903	16	4.61	3	0.86	9	2.7	"Sus scrofa mRNA, clone:LNG010065H05, expressed in lung /gb=AK345584 /gi=288783969 /ug=Ssc.1619 /len=2059"	GO:0005626//insoluble fraction;GO:0044424//intracellular part;GO:0016020//membrane	GO:0005083//small GTPase regulator activity;GO:0005488//binding	GO:0016192//vesicle-mediated transport;GO:0019222//regulation of metabolic process;GO:0031175//neuron projection development;GO:0007010//cytoskeleton organization;GO:0032011//ARF protein signal transduction;GO:0007155//cell adhesion	"gi|114678146|ref|XP_001154812.1|/3.6002e-40/PREDICTED: pleckstrin homology, Sec7 and coiled/coil domains 2 [Pan troglodytes]"
gnl|UG|Ssc#S35164235	12	3.45	4	1.14	7	2.1	"Sus scrofa mRNA, clone:OVR010008A06, expressed in ovary /gb=AK234104 /gi=115555491 /ug=Ssc.1418 /len=1896"	GO:0031981//nuclear lumen	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0005515//protein binding;GO:0003724//RNA helicase activity;GO:0032559"	GO:0009207;GO:0042254//ribosome biogenesis	gi|311275823|ref|XP_003134927.1|/0/PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX56-like [Sus scrofa]
gnl|UG|Ssc#S20939530	16	4.61	19	5.43	9	2.7	"AJ651253 CSEQRAN19 Sus scrofa cDNA clone C0003277_M14, mRNA sequence /clone=C0003277_M14 /gb=AJ651253 /gi=49333698 /ug=Ssc.74162 /len=506"	GO:0005856//cytoskeleton	GO:0046872//metal ion binding	GO:0048731;GO:0007010//cytoskeleton organization	gi|8393206|ref|NP_058844.1|/8.67843e-62/cysteine and glycine-rich protein 1 [Rattus norvegicus]
gnl|UG|Ssc#S17510699	2	0.58	2	0.57	0	0	"BX665725 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0011.e.10 5prim, mRNA sequence /clone=scag0011.e.10 /clone_end=5' /gb=BX665725 /gi=90235211 /ug=Ssc.21959 /len=904"	GO:0044444//cytoplasmic part	GO:0042802//identical protein binding;GO:0004812//aminoacyl-tRNA ligase activity;GO:0043169//cation binding;GO:0003723//RNA binding;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|157074020|ref|NP_001096719.1|/6.27928e-120/cysteinyl-tRNA synthetase, cytoplasmic [Bos taurus]"
gnl|UG|Ssc#S55324427	8	2.3	2	0.57	12	3.61	"Sus scrofa mRNA, clone:SMG010014F01, expressed in submaxillary gland /gb=AK349979 /gi=288780445 /ug=Ssc.18816 /len=1209"	-	GO:0016787//hydrolase activity	GO:0044238//primary metabolic process	gi|194043387|ref|XP_001929562.1|/1.09238e-179/PREDICTED: UPF0249 protein ydjC homolog [Sus scrofa]
gnl|UG|Ssc#S58303916	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa WW domain-containing transcription regulator protein 1-like (LOC100522573), mRNA /cds=p(284,1438) /gb=XM_003132481 /gi=311269530 /ug=Ssc.44830 /len=2230"	GO:0031981//nuclear lumen;GO:0043234//protein complex	GO:0003712//transcription cofactor activity;GO:0042802//identical protein binding	GO:0045596//negative regulation of cell differentiation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0001837//epithelial to mesenchymal transition;GO:0033673//negative regulation of kinase activity;GO:0008283//cell proliferation;GO:0051301//cell division;GO:0001503//ossification;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0001932//regulation of protein phosphorylation;GO:0035411//catenin import into nucleus;GO:0048858//cell projection morphogenesis;GO:0042306//regulation of protein import into nucleus;GO:0035556//intracellular signal transduction	gi|311269531|ref|XP_003132529.1|/0/PREDICTED: WW domain-containing transcription regulator protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46881061	3	0.86	2	0.57	0	0	"PREDICTED: Sus scrofa inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein (IKBKAP), mRNA /cds=p(1,4251) /gb=XM_001924394 /gi=311246187 /ug=Ssc.12636 /len=4619"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0060089;GO:0016301//kinase activity;GO:0003711//transcription elongation regulator activity;GO:0032559;GO:0019887//protein kinase regulator activity	"GO:0006468//protein phosphorylation;GO:0006355//regulation of transcription, DNA-dependent;GO:0023052//signaling;GO:0002376//immune system process;GO:0065003"	gi|311246188|ref|XP_001924429.2|/0/PREDICTED: elongator complex protein 1 [Sus scrofa]
gnl|UG|Ssc#S58305364	6	1.73	3	0.86	11	3.31	"PREDICTED: Sus scrofa MYC binding protein 2 (MYCBP2), miscRNA /gb=XR_045480 /gi=311266403 /ug=Ssc.8395 /len=14432"	GO:0000152//nuclear ubiquitin ligase complex	GO:0046914//transition metal ion binding;GO:0003824//catalytic activity	GO:0007088//regulation of mitosis	gi|300796565|ref|NP_001179746.1|/0/probable E3 ubiquitin-protein ligase MYCBP2 [Bos taurus]
gnl|UG|Ssc#S58302572	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa nebulin-like (LOC100516160), mRNA /cds=p(19,1347) /gb=XM_003133827 /gi=311273448 /ug=Ssc.20198 /len=1893"	-	-	-	gi|311273449|ref|XP_003133875.1|/0/PREDICTED: nebulin-like [Sus scrofa]
gnl|UG|Ssc#S58307709	10	2.88	7	2	13	3.91	"PREDICTED: Sus scrofa tyrosyl-DNA phosphodiesterase 1 (TDP1), mRNA /cds=p(20,1840) /gb=XM_003128683 /gi=311261436 /ug=Ssc.29061 /len=2145"	GO:0043231//intracellular membrane-bounded organelle	GO:0043566//structure-specific DNA binding;GO:0004518//nuclease activity;GO:0070259	GO:0006281//DNA repair	gi|311261437|ref|XP_003128731.1|/0/PREDICTED: tyrosyl-DNA phosphodiesterase 1-like [Sus scrofa]
gnl|UG|Ssc#S58311890	104	29.94	154	44.02	99	29.75	"PREDICTED: Sus scrofa ataxin 2-like, transcript variant 1 (ATXN2L), mRNA /cds=p(1,3138) /gb=XM_003124511 /gi=311251327 /ug=Ssc.10008 /len=3560"	-	-	-	gi|311251328|ref|XP_003124559.1|/0/PREDICTED: ataxin-2-like protein-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58313876	13	3.74	20	5.72	45	13.52	"PREDICTED: Sus scrofa EGF-containing fibulin-like extracellular matrix protein 2 (EFEMP2), mRNA /cds=p(139,1470) /gb=XM_003122524 /gi=311247277 /ug=Ssc.4267 /len=2127"	GO:0044464//cell part;GO:0005578//proteinaceous extracellular matrix	GO:0004872//receptor activity;GO:0046872//metal ion binding;GO:0005198//structural molecule activity	GO:0007599//hemostasis	gi|311247278|ref|XP_003122572.1|/0/PREDICTED: EGF-containing fibulin-like extracellular matrix protein 2-like [Sus scrofa]
gnl|UG|Ssc#S23212901	39	11.23	5	1.43	26	7.81	"Sus scrofa clone Clu_71340.scr.msk.p1.Contig1, mRNA sequence /gb=AY610107 /gi=52351677 /ug=Ssc.43306 /len=836"	"GO:0016604//nuclear body;GO:0034708;GO:0016585//chromatin remodeling complex;GO:0045120//pronucleus;GO:0000775//chromosome, centromeric region;GO:0005720//nuclear heterochromatin;GO:0012505//endomembrane system"	GO:0042393//histone binding;GO:0016564//transcription repressor activity;GO:0019899//enzyme binding;GO:0008134//transcription factor binding	"GO:0051704;GO:0006355//regulation of transcription, DNA-dependent;GO:0007599//hemostasis;GO:0006325//chromatin organization"	gi|6912292|ref|NP_036249.1|/1.27413e-100/chromobox protein homolog 5 [Homo sapiens]
gnl|UG|Ssc#S39548007	0	0	0	0	0	0	"Sus scrofa sirtuin 1 (SIRT1) mRNA, complete cds /cds=p(16,2244) /gb=EU030283 /gi=156123600 /ug=Ssc.89851 /len=4024"	GO:0000790//nuclear chromatin;GO:0016585//chromatin remodeling complex;GO:0000792//heterochromatin;GO:0012505//endomembrane system;GO:0019866//organelle inner membrane;GO:0016604//nuclear body	"GO:0030528//transcription regulator activity;GO:0051287//NAD binding;GO:0003712//transcription cofactor activity;GO:0008134//transcription factor binding;GO:0019904//protein domain specific binding;GO:0017136//NAD-dependent histone deacetylase activity;GO:0046914//transition metal ion binding;GO:0016763//transferase activity, transferring pentosyl groups"	"GO:0006641//triglyceride metabolic process;GO:0051704;GO:0045767//regulation of anti-apoptosis;GO:0051095;GO:0042254//ribosome biogenesis;GO:0043392//negative regulation of DNA binding;GO:0048232//male gamete generation;GO:0032070;GO:0045596//negative regulation of cell differentiation;GO:0006342//chromatin silencing;GO:0048513//organ development;GO:0045444//fat cell differentiation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0000060//protein import into nucleus, translocation;GO:0007568//aging;GO:0016575//histone deacetylation;GO:0009968//negative regulation of signal transduction;GO:0006282//regulation of DNA repair;GO:0022602//ovulation cycle process;GO:0008283//cell proliferation;GO:0006338//chromatin remodeling;GO:0006473//protein acetylation;GO:0031669//cellular response to nutrient levels"	gi|224809547|ref|NP_001139222.1|/0/NAD-dependent deacetylase sirtuin-1 [Sus scrofa]
gnl|UG|Ssc#S58314556	25	7.2	109	31.16	12	3.61	"PREDICTED: Sus scrofa tRNA (guanine-N(1)-)-methyltransferase-like (LOC100519406), mRNA /cds=p(28,1527) /gb=XM_003121846 /gi=311245613 /ug=Ssc.35807 /len=1582"	GO:0044424//intracellular part	GO:0016423//tRNA (guanine) methyltransferase activity	GO:0006399//tRNA metabolic process;GO:0001510//RNA methylation	gi|311245614|ref|XP_003121894.1|/0/PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Sus scrofa]
gnl|UG|Ssc#S55266943	16	4.61	0	0	13	3.91	"FS669388 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10073D01 5', mRNA sequence /clone=HTMT10073D01 /clone_end=5' /gb=FS669388 /gi=288265240 /ug=Ssc.7374 /len=834"	GO:0043231//intracellular membrane-bounded organelle	GO:0032559;GO:0019206//nucleoside kinase activity	GO:0051704;GO:0006796//phosphate metabolic process	gi|296200940|ref|XP_002747811.1|/1.09094e-152/PREDICTED: uridine-cytidine kinase-like 1 isoform 2 [Callithrix jacchus]
gnl|UG|Ssc#S26650757	7	2.02	0	0	5	1.5	"BW981820 full-length enriched swine cDNA library, adult intestine Sus scrofa cDNA clone ITT010065H02 5', mRNA sequence /clone=ITT010065H02 /clone_end=5' /gb=BW981820 /gi=74258660 /ug=Ssc.81899 /len=844"	-	-	-	gi|297459636|ref|XP_001251892.2|/5.78163e-109/PREDICTED: vacuolar protein sorting 13C protein isoform 2 [Bos taurus]
gnl|UG|Ssc#S23766668	34	9.79	47	13.43	42	12.62	"1125163 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN124287 /gi=59818566 /ug=Ssc.25098 /len=802"	GO:0031224//intrinsic to membrane	"GO:0016776//phosphotransferase activity, phosphate group as acceptor;GO:0019904//protein domain specific binding"	GO:0065003	"gi|73976046|ref|XP_539479.2|/1.4909e-103/PREDICTED: similar to membrane protein, palmitoylated 6 isoform 1 [Canis familiaris]"
gnl|UG|Ssc#S58308217	34	9.79	35	10	36	10.82	"PREDICTED: Sus scrofa human immunodeficiency virus type I enhancer binding protein 1 (HIVEP1), mRNA /cds=p(1,8145) /gb=XM_003128181 /gi=311259731 /ug=Ssc.87499 /len=9383"	GO:0044424//intracellular part	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0046872//metal ion binding	GO:0006357//regulation of transcription from RNA polymerase II promoter	gi|311259732|ref|XP_003128229.1|/0/PREDICTED: zinc finger protein 40-like [Sus scrofa]
gnl|UG|Ssc#S58312005	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa 14-3-3 protein gamma-like (LOC100523057), mRNA /cds=p(208,951) /gb=XM_003124396 /gi=311251094 /ug=Ssc.41233 /len=2243"	GO:0044444//cytoplasmic part	GO:0030291//protein serine/threonine kinase inhibitor activity;GO:0016491//oxidoreductase activity;GO:0005102//receptor binding;GO:0019901//protein kinase binding	GO:0022402//cell cycle process;GO:0050804//regulation of synaptic transmission;GO:0033673//negative regulation of kinase activity;GO:0007165//signal transduction;GO:0006886//intracellular protein transport;GO:0050767//regulation of neurogenesis	gi|114614147|ref|XP_519163.2|/3.36185e-135/PREDICTED: similar to 14-3-3 protein gamma subtype; 14-3-3 gamma [Pan troglodytes]
gnl|UG|Ssc#S58310101	31	8.93	36	10.29	18	5.41	"PREDICTED: Sus scrofa prolow-density lipoprotein receptor-related protein 1-like (LOC100514839), mRNA /cds=p(2,2722) /gb=XM_003126299 /gi=311255746 /ug=Ssc.6785 /len=3577"	GO:0043231//intracellular membrane-bounded organelle;GO:0016021//integral to membrane;GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0034185//apolipoprotein binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0044260;GO:0051336;GO:0051050//positive regulation of transport;GO:0006897//endocytosis;GO:0032374//regulation of cholesterol transport;GO:0048523//negative regulation of cellular process;GO:0032502//developmental process	gi|311255747|ref|XP_003126347.1|/0/PREDICTED: prolow-density lipoprotein receptor-related protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55258216	3	0.86	9	2.57	0	0	"FS650252 full-length enriched swine cDNA library, adult back fat Sus scrofa cDNA clone BKFL10034B09 5', mRNA sequence /clone=BKFL10034B09 /clone_end=5' /gb=FS650252 /gi=288252454 /ug=Ssc.77802 /len=448"	-	-	-	-
gnl|UG|Ssc#S23770850	2	0.58	4	1.14	3	0.9	"1142542 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN128469 /gi=59822748 /ug=Ssc.19141 /len=893"	-	-	-	"gi|297662346|ref|XP_002809670.1|/1.47362e-89/PREDICTED: troponin T, cardiac muscle-like isoform 5 [Pongo abelii]"
gnl|UG|Ssc#S55325758	48	13.82	22	6.29	35	10.52	"Sus scrofa mRNA, clone:PBL010056A10, expressed in peripheral blood mononuclear cells /gb=AK348893 /gi=288779068 /ug=Ssc.3720 /len=1296"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0005635//nuclear envelope	GO:0022829//wide pore channel activity	GO:0044238//primary metabolic process;GO:0050658//RNA transport;GO:0015758//glucose transport	gi|73955339|ref|XP_848977.1|/2.57094e-97/PREDICTED: similar to nucleoporin 88kDa [Canis familiaris]
gnl|UG|Ssc#S46878480	2	0.58	0	0	6	1.8	"PREDICTED: Sus scrofa transcription factor EB-like (LOC100157940), mRNA /cds=p(1,1431) /gb=XM_001927148 /gi=311260406 /ug=Ssc.26103 /len=2054"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0046983//protein dimerization activity	GO:0006955//immune response;GO:0001701//in utero embryonic development;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|194039265|ref|XP_001927183.1|/1.50092e-180/PREDICTED: transcription factor EB-like [Sus scrofa]
gnl|UG|Ssc#S58311924	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa branched chain ketoacid dehydrogenase kinase (BCKDK), mRNA /cds=p(284,1522) /gb=XM_003124471 /gi=311251259 /ug=Ssc.3173 /len=1836"	-	-	-	-
gnl|UG|Ssc#S46888477	4	1.15	6	1.72	8	2.4	"Sus scrofa vascular endothelial growth factor mRNA, partial cds /cds=p(1,1202) /gb=EU714324 /gi=194271210 /ug=Ssc.57541 /len=1875"	GO:0031091//platelet alpha granule;GO:0005578//proteinaceous extracellular matrix	GO:0005539//glycosaminoglycan binding;GO:0005172//vascular endothelial growth factor receptor binding;GO:0042802//identical protein binding;GO:0046983//protein dimerization activity	GO:0001775//cell activation;GO:0021700//developmental maturation;GO:0001935//endothelial cell proliferation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0008284//positive regulation of cell proliferation;GO:0010595//positive regulation of endothelial cell migration;GO:0045765//regulation of angiogenesis;GO:0043009//chordate embryonic development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0001754//eye photoreceptor cell differentiation;GO:0006887//exocytosis;GO:0009967//positive regulation of signal transduction;GO:0009791//post-embryonic development;GO:0007589//body fluid secretion;GO:0001666//response to hypoxia;GO:0001934//positive regulation of protein phosphorylation;GO:0032845;GO:0048771//tissue remodeling;GO:0002690//positive regulation of leukocyte chemotaxis;GO:0007599//hemostasis;GO:0048875;GO:0043066//negative regulation of apoptosis;GO:0043488//regulation of mRNA stability;GO:0043114//regulation of vascular permeability;GO:0022602//ovulation cycle process;GO:0001658//branching involved in ureteric bud morphogenesis;GO:0048747//muscle fiber development;GO:0030323//respiratory tube development;GO:0030218//erythrocyte differentiation;GO:0002460//adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;GO:0050927//positive regulation of positive chemotaxis	gi|194271211|gb|ACF37105.1|/3.08849e-169/vascular endothelial growth factor [Sus scrofa]
gnl|UG|Ssc#S40180317	3	0.86	0	0	0	0	"rjca10c_k24.y1 jca Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW275224 /gi=182491053 /ug=Ssc.68341 /len=595"	-	-	-	-
gnl|UG|Ssc#S35172740	6	1.73	0	0	29	8.72	"Sus scrofa mRNA, clone:AMP010101E10, expressed in alveolar macrophage /gb=AK231150 /gi=115547095 /ug=Ssc.45527 /len=2536"	GO:0031981//nuclear lumen	GO:0004386//helicase activity;GO:0003676//nucleic acid binding;GO:0032559	GO:0010467//gene expression;GO:0006281//DNA repair	gi|194225958|ref|XP_001498724.2|/0/PREDICTED: senataxin [Equus caballus]
gnl|UG|Ssc#S46880126	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa phosphoprotein enriched in astrocytes 15 (PEA15), mRNA /cds=p(125,517) /gb=XM_001928960 /gi=311254011 /ug=Ssc.20522 /len=2499"	GO:0005626//insoluble fraction;GO:0015630//microtubule cytoskeleton	GO:0019901//protein kinase binding	GO:0014072;GO:0010829//negative regulation of glucose transport;GO:0043066//negative regulation of apoptosis	gi|301786152|ref|XP_002928491.1|/6.48629e-64/PREDICTED: astrocytic phosphoprotein PEA-15-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55327158	1294	372.55	1315	375.89	1254	376.86	"Sus scrofa mRNA, clone:OVR010042C03, expressed in ovary /gb=AK347491 /gi=288576898 /ug=Ssc.17275 /len=1849"	-	-	-	-
gnl|UG|Ssc#S6000968	4	1.15	0	0	2	0.6	"143288 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BE235710 /gi=9020428 /ti=448048417 /ug=Ssc.79273 /len=564"	-	-	-	-
gnl|UG|Ssc#S58306619	3	0.86	4	1.14	3	0.9	"PREDICTED: Sus scrofa angiomotin like 1 (AMOTL1), mRNA /cds=p(1,2844) /gb=XM_003129771 /gi=311263747 /ug=Ssc.62452 /len=3092"	GO:0044424//intracellular part;GO:0043296//apical junction complex	GO:0005515//protein binding	-	gi|311263748|ref|XP_003129819.1|/0/PREDICTED: angiomotin-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58307891	24	6.91	77	22.01	15	4.51	"PREDICTED: Sus scrofa neogenin-like (LOC100510914), partial mRNA /cds=p(1,3371) /gb=XM_003128505 /gi=311260834 /ug=Ssc.4048 /len=4109"	GO:0016021//integral to membrane;GO:0031981//nuclear lumen	-	GO:0006935//chemotaxis;GO:0045597//positive regulation of cell differentiation;GO:0009653//anatomical structure morphogenesis	"gi|311260835|ref|XP_003128553.1|/0/PREDICTED: neogenin-like, partial [Sus scrofa]"
gnl|UG|Ssc#S35165267	3	0.86	0	0	11	3.31	"Sus scrofa mRNA, clone:LVRM10154H04, expressed in liver /gb=AK233469 /gi=115554459 /ug=Ssc.5998 /len=1421"	GO:0044424//intracellular part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0043169//cation binding;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	gi|77627733|ref|NP_001029281.1|/0/alanyl-tRNA editing protein Aarsd1 [Rattus norvegicus]
gnl|UG|Ssc#S35167930	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10164F04, expressed in ovary /gb=AK236215 /gi=115551809 /ug=Ssc.31415 /len=1848"	-	-	-	gi|258676922|gb|ACV87314.1|/2.45089e-09/IL-23 [Sus scrofa]
gnl|UG|Ssc#S46880445	5	1.44	0	0	3	0.9	"PREDICTED: Sus scrofa NEDD9-interacting protein with calponin homology and LIM domains-like, transcript variant 1 (LOC100153346), mRNA /cds=p(1,3213) /gb=XM_001925137 /gi=311244323 /ug=Ssc.80180 /len=3338"	-	-	-	gi|311244324|ref|XP_001925172.2|/0/PREDICTED: NEDD9-interacting protein with calponin homology and LIM domains-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46876324	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 (STAM2), mRNA /cds=p(1,1719) /gb=XM_001927009 /gi=311277294 /ug=Ssc.41465 /len=2258"	GO:0005769//early endosome	GO:0005488//binding	GO:0016192//vesicle-mediated transport;GO:0007173//epidermal growth factor receptor signaling pathway;GO:0015031//protein transport	gi|311277295|ref|XP_001927044.2|/0/PREDICTED: signal transducing adapter molecule 2 [Sus scrofa]
gnl|UG|Ssc#S55322715	134	38.58	193	55.17	96	28.85	"Sus scrofa mRNA, clone:DCI010025C11, expressed in dendritic cells (immature) /gb=AK344368 /gi=288782157 /ug=Ssc.1970 /len=1997"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0033176;GO:0031090//organelle membrane	GO:0015077//monovalent inorganic cation transmembrane transporter activity	"GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006875//cellular metal ion homeostasis;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0015031//protein transport"	"gi|119627474|gb|EAX07069.1|/3.98462e-29/ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b, isoform CRA_c [Homo sapiens]"
gnl|UG|Ssc#S35170376	70	20.15	21	6	32	9.62	"Sus scrofa mRNA, clone:OVRM10086D09, expressed in ovary /gb=AK235485 /gi=115549463 /ug=Ssc.50661 /len=1562"	GO:0032991//macromolecular complex;GO:0031966//mitochondrial membrane;GO:0012505//endomembrane system;GO:0042598//vesicular fraction	"GO:0030674//protein binding, bridging;GO:0019904//protein domain specific binding;GO:0042802//identical protein binding;GO:0008289//lipid binding;GO:0071617"	GO:0006458//'de novo' protein folding;GO:0046394;GO:0030035//microspike assembly;GO:0023052//signaling;GO:0006917//induction of apoptosis;GO:0006644//phospholipid metabolic process;GO:0043066//negative regulation of apoptosis	gi|270289756|ref|NP_001161893.1|/4.63183e-176/endophilin-B1 [Sus scrofa]
gnl|UG|Ssc#S58307922	4	1.15	0	0	8	2.4	"PREDICTED: Sus scrofa kinesin-like protein KIF7-like (LOC100523384), mRNA /cds=p(1,939) /gb=XM_003128474 /gi=311260713 /ug=Ssc.45331 /len=1364"	GO:0042995//cell projection	GO:0003774//motor activity;GO:0032559	GO:0008589//regulation of smoothened signaling pathway;GO:0007017//microtubule-based process	gi|311260714|ref|XP_003128522.1|/2.27732e-160/PREDICTED: kinesin-like protein KIF7-like [Sus scrofa]
gnl|UG|Ssc#S58313032	162	46.64	104	29.73	165	49.59	"PREDICTED: Sus scrofa serine/threonine-protein kinase N1-like (LOC100515528), mRNA /cds=p(9,2123) /gb=XM_003123371 /gi=311248996 /ug=Ssc.26100 /len=2123"	GO:0043231//intracellular membrane-bounded organelle;GO:0031410//cytoplasmic vesicle	GO:0000166//nucleotide binding;GO:0019901//protein kinase binding;GO:0035184//histone threonine kinase activity;GO:0003713//transcription coactivator activity;GO:0035258//steroid hormone receptor binding;GO:0017048//Rho GTPase binding	GO:0006970//response to osmotic stress;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0000187//activation of MAPK activity;GO:0035405	gi|311248997|ref|XP_003123419.1|/0/PREDICTED: serine/threonine-protein kinase N1-like [Sus scrofa]
gnl|UG|Ssc#S35722122	2	0.58	0	0	11	3.31	"YU-IC-0195 Sus Scrofa Testis Zap Express Library Sus scrofa cDNA clone SS-T-1-3a-T3_F01, mRNA sequence /clone=SS-T-1-3a-T3_F01 /gb=DV936774 /gi=118537835 /ug=Ssc.51701 /len=636"	-	-	-	-
gnl|UG|Ssc#S57704942	4	1.15	3	0.86	7	2.1	"Sus scrofa cardiomyopathy associated 5 (CMYA5), mRNA /cds=p(73,12306) /gb=NM_001197307 /gi=308912512 /ug=Ssc.33280 /len=12496"	-	GO:0005488//binding	-	gi|308912513|ref|NP_001184236.1|/0/cardiomyopathy-associated protein 5 [Sus scrofa]
gnl|UG|Ssc#S52535111	0	0	3	0.86	3	0.9	"Sus scrofa creatine transporter mRNA, complete cds /cds=p(234,2141) /gb=GQ180109 /gi=291167828 /ug=Ssc.95800 /len=2374"	GO:0016021//integral to membrane	GO:0005308//creatine transporter activity;GO:0005326//neurotransmitter transporter activity;GO:0015291//secondary active transmembrane transporter activity	GO:0015697//quaternary ammonium group transport;GO:0003012//muscle system process;GO:0072337;GO:0006599	gi|293597639|ref|NP_001170798.1|/0/sodium- and chloride-dependent creatine transporter 1 [Sus scrofa]
gnl|UG|Ssc#S23773706	6	1.73	7	2	3	0.9	"1147960 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN131325 /gi=59825606 /ug=Ssc.87331 /len=458"	-	-	-	-
gnl|UG|Ssc#S23212879	7	2.02	24	6.86	4	1.2	"Sus scrofa clone Clu_7711.scr.msk.p1.Contig2, mRNA sequence /gb=AY610129 /gi=52351699 /ug=Ssc.16708 /len=1606"	-	-	-	-
gnl|UG|Ssc#S26396713	41	11.8	17	4.86	14	4.21	"BW975440 full-length enriched swine cDNA library, adult periphral blood mononuclear cell Sus scrofa cDNA clone PBL010105F03 5', mRNA sequence /clone=PBL010105F03 /clone_end=5' /gb=BW975440 /gi=71955379 /ug=Ssc.3197 /len=859"	-	-	-	-
gnl|UG|Ssc#S18359685	11	3.17	5	1.43	8	2.4	"915670 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK455126 /gi=40802340 /ug=Ssc.56972 /len=862"	-	-	-	"gi|149413887|ref|XP_001517673.1|/4.20419e-08/PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]"
gnl|UG|Ssc#S46878703	20	5.76	7	2	5	1.5	"PREDICTED: Sus scrofa HECT domain containing 1 (HECTD1), mRNA /cds=p(1,7833) /gb=XM_001924672 /gi=311260922 /ug=Ssc.38601 /len=9085"	GO:0044464//cell part	GO:0043169//cation binding;GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination;GO:0014020	gi|311260923|ref|XP_001924707.2|/0/PREDICTED: e3 ubiquitin-protein ligase HECTD1 [Sus scrofa]
gnl|UG|Ssc#S55324377	3	0.86	0	0	5	1.5	"Sus scrofa mRNA, clone:ADR010077A03, expressed in adrenal gland /gb=AK343481 /gi=288780495 /ug=Ssc.57146 /len=1643"	GO:0044439;GO:0016020//membrane	"GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups;GO:0050662//coenzyme binding"	GO:0050896//response to stimulus;GO:0045017//glycerolipid biosynthetic process	"gi|301782744|ref|XP_002926790.1|/3.5044e-105/PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58300874	10	2.88	11	3.14	14	4.21	"PREDICTED: Sus scrofa 55 kDa erythrocyte membrane protein-like, transcript variant 1 (LOC100517992), mRNA /cds=p(147,1547) /gb=XM_003135524 /gi=311277260 /ug=Ssc.19356 /len=1944"	GO:0005626//insoluble fraction;GO:0005856//cytoskeleton;GO:0016021//integral to membrane;GO:0005902//microvillus	"GO:0005488//binding;GO:0016776//phosphotransferase activity, phosphate group as acceptor"	GO:0002688;GO:0023052//signaling	gi|311277261|ref|XP_003135572.1|/0/PREDICTED: 55 kDa erythrocyte membrane protein-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58301784	19	5.47	4	1.14	13	3.91	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase makorin-1-like (LOC100514261), mRNA /cds=p(204,1652) /gb=XM_003134608 /gi=311275273 /ug=Ssc.10393 /len=3110"	-	GO:0003824//catalytic activity;GO:0046914//transition metal ion binding	-	gi|311275274|ref|XP_003134656.1|/0/PREDICTED: e3 ubiquitin-protein ligase makorin-1-like [Sus scrofa]
gnl|UG|Ssc#S18548974	0	0	0	0	2	0.6	"BX917625 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0033d.p.20 5prim, mRNA sequence /clone=scan0033.p.20 /clone_end=5' /gb=BX917625 /gi=41134438 /ug=Ssc.84930 /len=634"	GO:0044464//cell part	GO:0032561	GO:0035556//intracellular signal transduction	gi|311270357|ref|XP_001929054.2|/1.59431e-71/PREDICTED: rho-related BTB domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S46876005	77	22.17	28	8	90	27.05	"PREDICTED: Sus scrofa protein tyrosine phosphatase, receptor type, A, transcript variant 1 (PTPRA), mRNA /cds=p(309,2738) /gb=XM_001927010 /gi=311274553 /ug=Ssc.11155 /len=3620"	GO:0016021//integral to membrane	GO:0004725//protein tyrosine phosphatase activity	GO:0006935//chemotaxis;GO:0006464//protein modification process	gi|311274554|ref|XP_001927045.2|/0/PREDICTED: receptor-type tyrosine-protein phosphatase alpha isoform 1 [Sus scrofa]
gnl|UG|Ssc#S29966080	258	74.28	200	57.17	353	106.09	"RPL21c10 Pig pBluescript and pTrueBlue library Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DR120954 /gi=84096493 /ug=Ssc.53726 /len=951"	GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|18104948|ref|NP_000973.2|/2.12167e-89/60S ribosomal protein L21 [Homo sapiens]
gnl|UG|Ssc#S35172260	5	1.44	0	0	0	0	"Sus scrofa mRNA, clone:ITT010021A02, expressed in intestine /gb=AK231233 /gi=115547575 /ug=Ssc.24235 /len=2211"	-	GO:0016790//thiolester hydrolase activity;GO:0070011	GO:0019941//modification-dependent protein catabolic process	gi|260064009|ref|NP_056121.2|/0/ubiquitin carboxyl-terminal hydrolase 24 [Homo sapiens]
gnl|UG|Ssc#S55324646	5	1.44	3	0.86	6	1.8	"Sus scrofa mRNA, clone:ADR010061B08, expressed in adrenal gland /gb=AK343410 /gi=288780226 /ug=Ssc.40739 /len=1607"	-	-	-	gi|260909098|gb|ACX54186.1|/3.68815e-06/APOBEC3 splice variant [Sus scrofa]
gnl|UG|Ssc#S40494112	45	12.96	138	39.45	35	10.52	"rssp18_k5.y1 ssp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW588718 /gi=183070618 /ug=Ssc.71751 /len=475"	GO:0043231//intracellular membrane-bounded organelle;GO:0044459//plasma membrane part;GO:0045202//synapse;GO:0043232	GO:0004871//signal transducer activity;GO:0046914//transition metal ion binding;GO:0035254//glutamate receptor binding	GO:0043065//positive regulation of apoptosis;GO:0007268//synaptic transmission	gi|311247881|ref|XP_003122858.1|/7.39297e-71/PREDICTED: 43 kDa receptor-associated protein of the synapse-like [Sus scrofa]
gnl|UG|Ssc#S58314604	7	2.02	0	0	7	2.1	"PREDICTED: Sus scrofa guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2-like, transcript variant 1 (LOC100524008), mRNA /cds=p(295,510) /gb=XM_003121810 /gi=311245493 /ug=Ssc.26312 /len=1945"	GO:0043231//intracellular membrane-bounded organelle;GO:0031234//extrinsic to internal side of plasma membrane;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0005488//binding;GO:0060089	GO:0001525//angiogenesis;GO:0001775//cell activation;GO:0007267//cell-cell signaling;GO:0033762//response to glucagon stimulus;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009207;GO:0015980//energy derivation by oxidation of organic compounds;GO:0007599//hemostasis	gi|73963784|ref|XP_853464.1|/1.90956e-36/PREDICTED: similar to Guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2 subunit (G gamma-I) [Canis familiaris]
gnl|UG|Ssc#S46879331	14	4.03	6	1.72	11	3.31	"PREDICTED: Sus scrofa growth differentiation factor 11 (GDF11), mRNA /cds=p(1,1341) /gb=XM_001927555 /gi=311255627 /ug=Ssc.15905 /len=1536"	-	-	-	-
gnl|UG|Ssc#S55320240	459	132.15	160	45.74	526	158.08	"Sus scrofa mRNA, clone:THY010068D08, expressed in thymus /gb=AK351723 /gi=288784632 /ug=Ssc.7610 /len=1911"	GO:0043234//protein complex	GO:0019904//protein domain specific binding	-	gi|211904140|ref|NP_001129738.1|/2.43494e-93/DAZ-associated protein 2 isoform c [Homo sapiens]
gnl|UG|Ssc#S58304133	0	0	0	0	0	0	"PREDICTED: Sus scrofa polybromo 1 (PBRM1), mRNA /cds=p(1,1455) /gb=XM_003132264 /gi=311269031 /ug=Ssc.22799 /len=1455"	GO:0034704//calcium channel complex	GO:0005262//calcium channel activity;GO:0043169//cation binding;GO:0016247//channel regulator activity	GO:0006816//calcium ion transport;GO:0032412	gi|311269032|ref|XP_003132312.1|/0/PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3 [Sus scrofa]
gnl|UG|Ssc#S29987614	0	0	0	0	3	0.9	"PDUts2064B07 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2064B07 5', mRNA sequence /clone=PDUts2064B07 /clone_end=5' /gb=CX062088 /gi=84138230 /ug=Ssc.88460 /len=638"	-	-	-	-
gnl|UG|Ssc#S35167954	10	2.88	19	5.43	10	3.01	"Sus scrofa mRNA, clone:OVRM10162C03, expressed in ovary /gb=AK236191 /gi=115551785 /ug=Ssc.78696 /len=1615"	-	-	-	gi|73954515|ref|XP_857807.1|/0/PREDICTED: hypothetical protein XP_852714 isoform 3 [Canis familiaris]
gnl|UG|Ssc#S34502344	6	1.73	4	1.14	3	0.9	"DB816541 full-length enriched swine cDNA library, adult spleen Sus scrofa cDNA 3', mRNA sequence /clone=SPL010006B08 /clone_end=3' /gb=DB816541 /gi=112759062 /ug=Ssc.95277 /len=808"	-	-	-	-
gnl|UG|Ssc#S23213495	12	3.45	4	1.14	12	3.61	"Sus scrofa clone Clu_1309.scr.msk.p1.Contig1, mRNA sequence /gb=AY609482 /gi=52351077 /ug=Ssc.94207 /len=1979"	GO:0031224//intrinsic to membrane	-	-	gi|311264807|ref|XP_003130343.1|/0/PREDICTED: transmembrane protein 183-like [Sus scrofa]
gnl|UG|Ssc#S58311091	5	1.44	2	0.57	0	0	"PREDICTED: Sus scrofa transmembrane protein 214-like, transcript variant 1 (LOC100524558), mRNA /cds=p(41,2104) /gb=XM_003125309 /gi=311252969 /ug=Ssc.51970 /len=3130"	GO:0031224//intrinsic to membrane	GO:0005488//binding	-	gi|311252970|ref|XP_003125357.1|/0/PREDICTED: transmembrane protein 214-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S39991201	2	0.58	0	0	2	0.6	"recc2804c_a15.y1 ecc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW086110 /gi=181369384 /ug=Ssc.66850 /len=603"	-	-	-	gi|73996207|ref|XP_857309.1|/2.03661e-09/PREDICTED: similar to poly(rC) binding protein 2 isoform 3 [Canis familiaris]
gnl|UG|Ssc#S58310946	32	9.21	0	0	13	3.91	"PREDICTED: Sus scrofa repressor of RNA polymerase III transcription MAF1 homolog (LOC100526048), mRNA /cds=p(420,1199) /gb=XM_003125444 /gi=311253278 /ug=Ssc.3111 /len=1690"	-	-	-	-
gnl|UG|Ssc#S58302383	2	0.58	0	0	5	1.5	"PREDICTED: Sus scrofa protein LAP2-like (LOC100511602), mRNA /cds=p(1,2379) /gb=XM_003134002 /gi=311273834 /ug=Ssc.9165 /len=2761"	GO:0043231//intracellular membrane-bounded organelle;GO:0009925//basal plasma membrane;GO:0005578//proteinaceous extracellular matrix	GO:0005102//receptor binding;GO:0005198//structural molecule activity	GO:0008105//asymmetric protein localization;GO:0035088//establishment or maintenance of apical/basal cell polarity;GO:0040007//growth;GO:0007010//cytoskeleton organization;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|311273835|ref|XP_003134050.1|/0/PREDICTED: protein LAP2-like [Sus scrofa]
gnl|UG|Ssc#S58308815	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa chloride transport protein 6-like (LOC100511997), mRNA /cds=p(1,2874) /gb=XM_003127587 /gi=311258473 /ug=Ssc.50333 /len=2874"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	GO:0015291//secondary active transmembrane transporter activity;GO:0005254//chloride channel activity;GO:0032559	GO:0019725//cellular homeostasis;GO:0023052//signaling;GO:0015698//inorganic anion transport;GO:0034220//ion transmembrane transport;GO:0043269//regulation of ion transport;GO:0009605//response to external stimulus	gi|311258474|ref|XP_003127635.1|/0/PREDICTED: chloride transport protein 6-like [Sus scrofa]
gnl|UG|Ssc#S35167731	5	1.44	7	2	4	1.2	"Sus scrofa mRNA, clone:THY010074D05, expressed in thymus /gb=AK239201 /gi=115552008 /ug=Ssc.33338 /len=1791"	-	-	-	"gi|114640094|ref|XP_508726.2|/2.49092e-152/PREDICTED: similar to DCN1, defective in cullin neddylation 1, domain containing 5 [Pan troglodytes]"
gnl|UG|Ssc#S58304208	0	0	0	0	10	3.01	"PREDICTED: Sus scrofa ATR interacting protein (ATRIP), mRNA /cds=p(1,1716) /gb=XM_003132190 /gi=311268862 /ug=Ssc.19644 /len=1811"	GO:0031981//nuclear lumen	GO:0005488//binding;GO:0004672//protein kinase activity	GO:0006259//DNA metabolic process;GO:0007050//cell cycle arrest;GO:0006974//response to DNA damage stimulus	gi|311268863|ref|XP_003132238.1|/0/PREDICTED: ATR-interacting protein-like [Sus scrofa]
gnl|UG|Ssc#S23212960	293	84.36	453	129.49	249	74.83	"Sus scrofa clone Clu_6013.scr.msk.p1.Contig7, mRNA sequence /gb=AY610048 /gi=52351618 /ug=Ssc.93902 /len=1719"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|62460596|ref|NP_001014948.1|/0/kelch domain-containing protein 2 [Bos taurus]
gnl|UG|Ssc#S23689591	0	0	0	0	0	0	"1000071 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN100694 /gi=59772977 /ug=Ssc.6462 /len=906"	-	-	-	-
gnl|UG|Ssc#S35166877	9	2.59	15	4.29	17	5.11	"Sus scrofa mRNA, clone:THY010105C07, expressed in thymus /gb=AK239456 /gi=115552862 /ug=Ssc.8313 /len=1686"	-	-	-	gi|296485333|gb|DAA27448.1|/1.55478e-132/thioredoxin domain containing 15-like [Bos taurus]
gnl|UG|Ssc#S58305482	5	1.44	36	10.29	10	3.01	"PREDICTED: Sus scrofa ubiquitin-like protein 3-like (LOC100517418), mRNA /cds=p(1023,1376) /gb=XM_003130919 /gi=311266085 /ug=Ssc.47606 /len=4207"	GO:0016020//membrane	-	-	gi|296203639|ref|XP_002748966.1|/5.20014e-64/PREDICTED: ubiquitin-like protein 3-like [Callithrix jacchus]
gnl|UG|Ssc#S48853664	99	28.5	116	33.16	80	24.04	"WJ317 wujin pig muscle full-length cDNA library Sus scrofa cDNA, mRNA sequence /gb=GH228991 /gi=217062782 /ug=Ssc.1202 /len=1028"	GO:0015935//small ribosomal subunit;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0012502//induction of programmed cell death;GO:0006412//translation;GO:0019080;GO:0048869;GO:0031016//pancreas development	gi|296201954|ref|XP_002748370.1|/7.76455e-135/PREDICTED: 40S ribosomal protein S3a-like [Callithrix jacchus]
gnl|UG|Ssc#S50167269	19	5.47	7	2	18	5.41	"susfleck_PG_N_37_B07 SUSFLECK Pituitary Gland Normalized Sus scrofa cDNA clone 37_B07, mRNA sequence /clone=37_B07 /gb=FD599105 /gi=221022608 /ug=Ssc.85982 /len=498"	-	GO:0005488//binding	-	gi|296482696|gb|DAA24811.1|/4.89703e-91/tetratricopeptide repeat protein 27 [Bos taurus]
gnl|UG|Ssc#S46879669	48	13.82	89	25.44	43	12.92	"PREDICTED: Sus scrofa brain protein 44, transcript variant 1 (BRP44), mRNA /cds=p(1,894) /gb=XM_001928647 /gi=311253889 /ug=Ssc.4836 /len=1397"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311253890|ref|XP_001928682.2|/4.05508e-128/PREDICTED: hypothetical protein LOC100154777 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55263292	0	0	0	0	2	0.6	"FS644265 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10054C09 5', mRNA sequence /clone=BFLT10054C09 /clone_end=5' /gb=FS644265 /gi=288260553 /ug=Ssc.86914 /len=483"	-	-	-	-
gnl|UG|Ssc#S58307047	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa helicase, POLQ-like (HELQ), mRNA /cds=p(1,3360) /gb=XM_003129349 /gi=311262876 /ug=Ssc.12669 /len=3466"	-	"GO:0032559;GO:0042623//ATPase activity, coupled"	-	gi|311262877|ref|XP_003129397.1|/0/PREDICTED: helicase POLQ-like [Sus scrofa]
gnl|UG|Ssc#S58313781	12	3.45	0	0	5	1.5	"PREDICTED: Sus scrofa echinoderm microtubule-associated protein-like 3-like (LOC100515768), mRNA /cds=p(1,876) /gb=XM_003122621 /gi=311247482 /ug=Ssc.79625 /len=1114"	-	-	-	-
gnl|UG|Ssc#S26720080	39	11.23	81	23.15	76	22.84	"AJ956164 KN404_2 Sus scrofa cDNA clone C0007755n04 3', mRNA sequence /clone=C0007755n04 /clone_end=3' /gb=AJ956164 /gi=74372980 /ug=Ssc.53363 /len=800"	-	-	-	-
gnl|UG|Ssc#S46877264	5	1.44	2	0.57	6	1.8	"PREDICTED: Sus scrofa exosomal core protein CSL4 (LOC100153550), mRNA /cds=p(39,626) /gb=XM_001928803 /gi=194041796 /ug=Ssc.10542 /len=2540"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding;GO:0004527//exonuclease activity	"GO:0000291//nuclear-transcribed mRNA catabolic process, exonucleolytic;GO:0042254//ribosome biogenesis;GO:0010467//gene expression"	gi|194041797|ref|XP_001928838.1|/1.66333e-107/PREDICTED: 3'-5' exoribonuclease CSL4 homolog [Sus scrofa]
gnl|UG|Ssc#S58307466	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) (PDS5A), mRNA /cds=p(1,1005) /gb=XM_003128934 /gi=311262026 /ug=Ssc.79942 /len=1005"	-	-	-	gi|311262027|ref|XP_003128982.1|/0/PREDICTED: sister chromatid cohesion protein PDS5 homolog A-like [Sus scrofa]
gnl|UG|Ssc#S58306584	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa cytoplasmic dynein 2 heavy chain 1-like (LOC100523628), mRNA /cds=p(1,10509) /gb=XM_003129815 /gi=311263818 /ug=Ssc.18961 /len=10598"	GO:0016020//membrane;GO:0005875//microtubule associated complex;GO:0005930//axoneme	GO:0032559;GO:0003774//motor activity	GO:0007017//microtubule-based process;GO:0051604//protein maturation;GO:0035108//limb morphogenesis;GO:0009855//determination of bilateral symmetry;GO:0009207;GO:0003002//regionalization;GO:0006996//organelle organization;GO:0007420//brain development;GO:0008104//protein localization;GO:0010927	gi|311263819|ref|XP_003129863.1|/0/PREDICTED: cytoplasmic dynein 2 heavy chain 1-like [Sus scrofa]
gnl|UG|Ssc#S39773919	10	2.88	3	0.86	23	6.91	"rpbfe0132_p15.y1 bfe Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV869197 /gi=178489923 /ug=Ssc.18877 /len=727"	-	-	-	-
gnl|UG|Ssc#S58304262	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa kelch repeat and BTB domain-containing protein 5-like (LOC100523695), mRNA /cds=p(1,1875) /gb=XM_003132136 /gi=311268728 /ug=Ssc.68535 /len=2276"	-	GO:0004175//endopeptidase activity	GO:0019538//protein metabolic process	gi|311268729|ref|XP_003132184.1|/0/PREDICTED: kelch repeat and BTB domain-containing protein 5-like [Sus scrofa]
gnl|UG|Ssc#S58303283	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa poly(ADP-ribose) glycohydrolase-like (LOC100522038), mRNA /cds=p(1,2931) /gb=XM_003133110 /gi=311271514 /ug=Ssc.7886 /len=3841"	GO:0044427;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0042598//vesicular fraction	"GO:0005488//binding;GO:0004553//hydrolase activity, hydrolyzing O-glycosyl compounds"	GO:0006282//regulation of DNA repair;GO:0009581	gi|311271515|ref|XP_003133158.1|/0/PREDICTED: poly(ADP-ribose) glycohydrolase-like [Sus scrofa]
gnl|UG|Ssc#S16762439	25	7.2	24	6.86	33	9.92	"821358 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF360057 /gi=34157394 /ug=Ssc.81878 /len=716"	-	-	-	gi|311259795|ref|XP_003128249.1|/1.98089e-21/PREDICTED: hypothetical protein LOC100512721 [Sus scrofa]
gnl|UG|Ssc#S46880207	18	5.18	6	1.72	16	4.81	"PREDICTED: Sus scrofa tetratricopeptide repeat protein 35-like (LOC100155040), mRNA /cds=p(1,846) /gb=XM_001925281 /gi=311253488 /ug=Ssc.8372 /len=2177"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311253489|ref|XP_001925316.2|/8.0362e-148/PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 35-like [Sus scrofa]
gnl|UG|Ssc#S58314819	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa RNA polymerase II-associated protein 1-like (LOC100152008), mRNA /cds=p(142,4323) /gb=XM_003121581 /gi=311244941 /ug=Ssc.50537 /len=4691"	GO:0043234//protein complex;GO:0044424//intracellular part	GO:0016779//nucleotidyltransferase activity	GO:0008152//metabolic process	gi|311244942|ref|XP_003121629.1|/0/PREDICTED: RNA polymerase II-associated protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58314197	849	244.43	446	127.49	650	195.34	"PREDICTED: Sus scrofa protein SET-like, transcript variant 1 (LOC100514028), mRNA /cds=p(121,990) /gb=XM_003122203 /gi=311246560 /ug=Ssc.56407 /len=2768"	GO:0031981//nuclear lumen;GO:0032991//macromolecular complex;GO:0044444//cytoplasmic part	GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0019888//protein phosphatase regulator activity;GO:0019212//phosphatase inhibitor activity	GO:0034728;GO:0006259//DNA metabolic process;GO:0016070//RNA metabolic process;GO:0051169//nuclear transport;GO:0043066//negative regulation of apoptosis;GO:0016573//histone acetylation	gi|311246561|ref|XP_003122251.1|/5.46628e-136/PREDICTED: protein SET-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S31106976	10	2.88	31	8.86	6	1.8	"1515496 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY410814 /gi=87212117 /ug=Ssc.26294 /len=696"	GO:0000323//lytic vacuole;GO:0005819//spindle	GO:0003774//motor activity;GO:0032559	GO:0048869;GO:0048731;GO:0007017//microtubule-based process;GO:0007067//mitosis;GO:0007599//hemostasis	gi|301761820|ref|XP_002916332.1|/3.41835e-23/PREDICTED: kinesin-like protein KIF2A-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46876157	0	0	3	0.86	11	3.31	"PREDICTED: Sus scrofa fibroblast growth factor receptor 1, transcript variant 1 (FGFR1), mRNA /cds=p(222,2678) /gb=XM_001928678 /gi=311272355 /ug=Ssc.17773 /len=3974"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane	GO:0004714//transmembrane receptor protein tyrosine kinase activity;GO:0005539//glycosaminoglycan binding;GO:0032559;GO:0042802//identical protein binding;GO:0019838//growth factor binding	GO:0061138;GO:0021700//developmental maturation;GO:0006915//apoptosis;GO:0008284//positive regulation of cell proliferation;GO:0043009//chordate embryonic development;GO:0050954//sensory perception of mechanical stimulus;GO:0007243//intracellular protein kinase cascade;GO:0021761//limbic system development;GO:0051726//regulation of cell cycle;GO:0042471//ear morphogenesis;GO:0006464//protein modification process;GO:0045596//negative regulation of cell differentiation;GO:0040007//growth;GO:0006935//chemotaxis;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0010975//regulation of neuron projection development;GO:0003156//regulation of organ formation;GO:0060119//inner ear receptor cell development;GO:0021953//central nervous system neuron differentiation;GO:0035108//limb morphogenesis;GO:0021869//forebrain ventricular zone progenitor cell division;GO:0030323//respiratory tube development;GO:0007431//salivary gland development;GO:0008543//fibroblast growth factor receptor signaling pathway;GO:0060485//mesenchyme development;GO:0051931;GO:0042661//regulation of mesodermal cell fate specification;GO:0060638//mesenchymal-epithelial cell signaling	gi|291327497|ref|NP_001167538.1|/0/basic fibroblast growth factor receptor 1 isoform 14 precursor [Homo sapiens]
gnl|UG|Ssc#S58305108	26	7.49	10	2.86	28	8.41	"PREDICTED: Sus scrofa ATP-dependent RNA helicase DDX42-like (LOC100512557), mRNA /cds=p(108,2933) /gb=XM_003131289 /gi=311266964 /ug=Ssc.47396 /len=3812"	GO:0016604//nuclear body	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0050789//regulation of biological process;GO:0009207;GO:0033036	gi|311266965|ref|XP_003131337.1|/0/PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX42-like [Sus scrofa]
gnl|UG|Ssc#S55322592	0	0	6	1.72	0	0	"Sus scrofa mRNA, clone:DCI010062F01, expressed in dendritic cells (immature) /gb=AK344491 /gi=288782280 /ug=Ssc.7063 /len=3221"	GO:0005769//early endosome;GO:0012505//endomembrane system;GO:0031090//organelle membrane;GO:0031224//intrinsic to membrane	GO:0005381//iron ion transmembrane transporter activity	GO:0070838//divalent metal ion transport;GO:0006826//iron ion transport	gi|297304861|ref|XP_001101253.2|/3.76191e-59/PREDICTED: hypothetical protein LOC710338 [Macaca mulatta]
gnl|UG|Ssc#S35172228	11	3.17	3	0.86	7	2.1	"Sus scrofa mRNA, clone:ITT010026C07, expressed in intestine /gb=AK231265 /gi=115547607 /ug=Ssc.21576 /len=2794"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0005769//early endosome	GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0016192//vesicle-mediated transport;GO:0007041//lysosomal transport;GO:0009894;GO:0008283//cell proliferation;GO:0007173//epidermal growth factor receptor signaling pathway;GO:0010741	gi|296476129|gb|DAA18244.1|/0/hepatocyte growth factor-regulated tyrosine kinase substrate [Bos taurus]
gnl|UG|Ssc#S35172543	548	157.77	1001	286.13	503	151.16	"Sus scrofa mRNA, clone:OVRM10004A11, expressed in ovary /gb=AK234665 /gi=115547292 /ug=Ssc.25839 /len=3652"	GO:0043231//intracellular membrane-bounded organelle;GO:0005902//microvillus;GO:0005626//insoluble fraction;GO:0005815//microtubule organizing center;GO:0005913//cell-cell adherens junction;GO:0019897//extrinsic to plasma membrane;GO:0031252//cell leading edge;GO:0071664//catenin-TCF7L2 complex;GO:0031674//I band;GO:0030425//dendrite	GO:0046332//SMAD binding;GO:0019902//phosphatase binding;GO:0008134//transcription factor binding;GO:0019900//kinase binding;GO:0043566//structure-specific DNA binding;GO:0035258//steroid hormone receptor binding;GO:0050839//cell adhesion molecule binding;GO:0003702//RNA polymerase II transcription factor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003713//transcription coactivator activity;GO:0035254//glutamate receptor binding;GO:0060089;GO:0000975;GO:0043565//sequence-specific DNA binding	GO:0014070//response to organic cyclic compound;GO:0001894//tissue homeostasis;GO:0010560//positive regulation of glycoprotein biosynthetic process;GO:0060070//canonical Wnt receptor signaling pathway;GO:0034765//regulation of ion transmembrane transport;GO:0001837//epithelial to mesenchymal transition;GO:0002088//lens development in camera-type eye;GO:0030217//T cell differentiation;GO:0002762//negative regulation of myeloid leukocyte differentiation;GO:0003159;GO:0031589//cell-substrate adhesion;GO:0007043//cell-cell junction assembly;GO:0048754//branching morphogenesis of a tube;GO:0032880//regulation of protein localization;GO:0021700//developmental maturation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0030858//positive regulation of epithelial cell differentiation;GO:0014009//glial cell proliferation;GO:0051259//protein oligomerization;GO:0001942//hair follicle development;GO:0030278//regulation of ossification;GO:0001525//angiogenesis;GO:0007063//regulation of sister chromatid cohesion;GO:0007281//germ cell development;GO:0042692//muscle cell differentiation;GO:0042552//myelination;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0071310//cellular response to organic substance;GO:0035115//embryonic forelimb morphogenesis;GO:0022408//negative regulation of cell-cell adhesion;GO:0001709//cell fate determination;GO:0046546//development of primary male sexual characteristics;GO:0042098//T cell proliferation;GO:0043009//chordate embryonic development;GO:0001838//embryonic epithelial tube formation;GO:0009880//embryonic pattern specification;GO:0001706//endoderm formation;GO:0014706//striated muscle tissue development;GO:0002062//chondrocyte differentiation;GO:0043062//extracellular structure organization;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0030518//steroid hormone receptor signaling pathway;GO:0010463//mesenchymal cell proliferation;GO:0048565//digestive tract development;GO:0007420//brain development;GO:0034613//cellular protein localization;GO:0001656//metanephros development;GO:0009798//axis specification;GO:0045686//negative regulation of glial cell differentiation;GO:0043627//response to estrogen stimulus;GO:0016477//cell migration;GO:0042476//odontogenesis;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0043392//negative regulation of DNA binding;GO:0030323//respiratory tube development;GO:0016192//vesicle-mediated transport;GO:0048263//determination of dorsal identity;GO:0048608//reproductive structure development;GO:0010038//response to metal ion;GO:0060788;GO:0003129;GO:0070848//response to growth factor stimulus;GO:0001570//vasculogenesis;GO:0050679//positive regulation of epithelial cell proliferation;GO:0045767//regulation of anti-apoptosis;GO:0007098//centrosome cycle;GO:0060231//mesenchymal to epithelial transition	gi|47523792|ref|NP_999532.1|/0/catenin beta-1 [Sus scrofa]
gnl|UG|Ssc#S46877795	34	9.79	8	2.29	28	8.41	"PREDICTED: Sus scrofa importin 5 (IPO5), mRNA /cds=p(1,3246) /gb=XM_001926783 /gi=311266473 /ug=Ssc.59130 /len=4483"	GO:0031981//nuclear lumen;GO:0005635//nuclear envelope	GO:0022892;GO:0017016//Ras GTPase binding;GO:0004857//enzyme inhibitor activity	GO:0051704;GO:0006606//protein import into nucleus	gi|194040685|ref|XP_001926818.1|/0/PREDICTED: importin-5 [Sus scrofa]
gnl|UG|Ssc#S58314668	13	3.74	4	1.14	6	1.8	"PREDICTED: Sus scrofa DIS3-like exonuclease 1-like (LOC100515640), mRNA /cds=p(84,3134) /gb=XM_003121735 /gi=311245323 /ug=Ssc.18386 /len=3384"	GO:0043234//protein complex;GO:0044424//intracellular part	GO:0003676//nucleic acid binding;GO:0004518//nuclease activity	GO:0016072//rRNA metabolic process	gi|311245324|ref|XP_003121783.1|/0/PREDICTED: DIS3-like exonuclease 1-like [Sus scrofa]
gnl|UG|Ssc#S35164443	7	2.02	9	2.57	4	1.2	"Sus scrofa mRNA, clone:MLN010063C05, expressed in mesenteric lymph node /gb=AK233898 /gi=115555283 /ug=Ssc.47618 /len=902"	-	-	-	-
gnl|UG|Ssc#S20939425	232	66.79	146	41.73	232	69.72	"AJ651148 CSEQRAN19 Sus scrofa cDNA clone C0003277_H06, mRNA sequence /clone=C0003277_H06 /gb=AJ651148 /gi=49327993 /ug=Ssc.85506 /len=518"	GO:0044444//cytoplasmic part	"GO:0016209//antioxidant activity;GO:0005488//binding;GO:0016668//oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor"	GO:0019221//cytokine-mediated signaling pathway	gi|157786640|ref|NP_001099275.1|/5.02368e-68/thioredoxin domain-containing protein 17 [Rattus norvegicus]
gnl|UG|Ssc#S55323185	197	56.72	114	32.59	342	102.78	"Sus scrofa mRNA, clone:SPL010093B07, expressed in spleen /gb=AK350557 /gi=288781687 /ug=Ssc.20160 /len=1660"	-	GO:0003824//catalytic activity	-	gi|296219742|ref|XP_002756033.1|/2.04127e-177/PREDICTED: methyltransferase-like protein 9-like [Callithrix jacchus]
gnl|UG|Ssc#S55322623	19	5.47	2	0.57	6	1.8	"Sus scrofa mRNA, clone:DCI010058C09, expressed in dendritic cells (immature) /gb=AK344460 /gi=288782249 /ug=Ssc.15548 /len=2125"	-	-	-	-
gnl|UG|Ssc#S55324735	34	9.79	11	3.14	12	3.61	"Sus scrofa mRNA, clone:ADR010034H05, expressed in adrenal gland /gb=AK343321 /gi=288780137 /ug=Ssc.11214 /len=1727"	GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|7705720|ref|NP_057039.1|/8.39721e-174/protein MEMO1 isoform 1 [Homo sapiens]
gnl|UG|Ssc#S58304620	0	0	0	0	0	0	"PREDICTED: Sus scrofa GTP-binding protein era homolog (LOC100518578), mRNA /cds=p(1,1767) /gb=XM_003131792 /gi=311267970 /ug=Ssc.20565 /len=2370"	GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part	GO:0043021//ribonucleoprotein binding;GO:0032561;GO:0003723//RNA binding	GO:0022618//ribonucleoprotein complex assembly	gi|311267971|ref|XP_003131840.1|/0/PREDICTED: GTP-binding protein era homolog [Sus scrofa]
gnl|UG|Ssc#S33259476	11	3.17	2	0.57	3	0.9	"Sus scrofa signal transducer and activator of transcription 3 (Stat3) mRNA, complete cds /cds=p(137,2449) /gb=DQ470570 /gi=94471895 /ug=Ssc.3409 /len=2476"	GO:0031981//nuclear lumen;GO:0016020//membrane;GO:0044444//cytoplasmic part	GO:0030528//transcription regulator activity;GO:0060089;GO:0001071//nucleic acid binding transcription factor activity;GO:0046872//metal ion binding;GO:0035258//steroid hormone receptor binding;GO:0003677//DNA binding;GO:0019900//kinase binding;GO:0048020	GO:0000003//reproduction;GO:0002526//acute inflammatory response;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0033500//carbohydrate homeostasis;GO:0006605//protein targeting;GO:0043627//response to estrogen stimulus;GO:0007259//JAK-STAT cascade;GO:0019221//cytokine-mediated signaling pathway;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0046530//photoreceptor cell differentiation;GO:0051704;GO:0007631//feeding behavior;GO:0035264//multicellular organism growth;GO:0048871//multicellular organismal homeostasis	gi|113205774|ref|NP_001038045.1|/0/signal transducer and activator of transcription 3 [Sus scrofa]
gnl|UG|Ssc#S46877535	14	4.03	8	2.29	13	3.91	"PREDICTED: Sus scrofa nischarin (NISCH), mRNA /cds=p(1,4563) /gb=XM_001925354 /gi=194041230 /ug=Ssc.2696 /len=5158"	GO:0005768//endosome;GO:0016020//membrane	GO:0004871//signal transducer activity;GO:0005543//phospholipid binding;GO:0005102//receptor binding	GO:0016477//cell migration;GO:0012501//programmed cell death;GO:0007265//Ras protein signal transduction;GO:0007010//cytoskeleton organization	gi|194041231|ref|XP_001925389.1|/0/PREDICTED: nischarin [Sus scrofa]
gnl|UG|Ssc#S58311461	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa polymerase (RNA) I polypeptide A, 194kDa (POLR1A), mRNA /cds=p(104,5263) /gb=XM_003124938 /gi=311252216 /ug=Ssc.27554 /len=6148"	GO:0044452	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0034062//RNA polymerase activity	"GO:0006352//transcription initiation, DNA-dependent;GO:0006353//transcription termination, DNA-dependent;GO:0006354//transcription elongation, DNA-dependent"	gi|311252217|ref|XP_003124986.1|/0/PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Sus scrofa]
gnl|UG|Ssc#S58303966	24	6.91	4	1.14	25	7.51	"PREDICTED: Sus scrofa tyrosine-protein kinase RYK-like (LOC100523513), mRNA /cds=p(1,2601) /gb=XM_003132431 /gi=311269415 /ug=Ssc.7194 /len=3781"	GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane	GO:0001664//G-protein-coupled receptor binding;GO:0004713//protein tyrosine kinase activity;GO:0032559;GO:0004888//transmembrane receptor activity	GO:0007411//axon guidance;GO:0007166//cell surface receptor linked signaling pathway;GO:0010740//positive regulation of intracellular protein kinase cascade;GO:0009887//organ morphogenesis;GO:0006464//protein modification process;GO:0030517//negative regulation of axon extension;GO:0021537//telencephalon development	gi|311269416|ref|XP_003132479.1|/0/PREDICTED: tyrosine-protein kinase RYK-like [Sus scrofa]
gnl|UG|Ssc#S19550417	2	0.58	0	0	2	0.6	"998179 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN166513 /gi=46180943 /ug=Ssc.82235 /len=881"	GO:0030684//preribosome;GO:0031981//nuclear lumen	GO:0004871//signal transducer activity	"GO:0007187//G-protein signaling, coupled to cyclic nucleotide second messenger;GO:0042254//ribosome biogenesis"	gi|296473511|gb|DAA15626.1|/1.91765e-134/transducin beta-like protein 3 [Bos taurus]
gnl|UG|Ssc#S27603323	2	0.58	3	0.86	2	0.6	"EST-AR121G03 Porcine Lymph node cDNA library Sus scrofa cDNA clone AR121G03, mRNA sequence /clone=AR121G03 /gb=DV228650 /gi=77597983 /ug=Ssc.27199 /len=768"	-	-	-	-
gnl|UG|Ssc#S46876384	0	0	2	0.57	3	0.9	"PREDICTED: Sus scrofa acetoacetyl-CoA synthetase-like (LOC100156545), mRNA /cds=p(1,1653) /gb=XM_001924242 /gi=194043612 /ug=Ssc.48095 /len=2755"	GO:0044444//cytoplasmic part	GO:0016878//acid-thiol ligase activity;GO:0032559	GO:0050796//regulation of insulin secretion;GO:0009888//tissue development;GO:0044238//primary metabolic process;GO:0033574//response to testosterone stimulus;GO:0031667//response to nutrient levels;GO:0032787//monocarboxylic acid metabolic process;GO:0070542//response to fatty acid;GO:0001678//cellular glucose homeostasis;GO:0014070//response to organic cyclic compound;GO:0048513//organ development;GO:0070723//response to cholesterol;GO:0006950//response to stress;GO:0045444//fat cell differentiation	gi|194043613|ref|XP_001924277.1|/0/PREDICTED: acetoacetyl-CoA synthetase-like [Sus scrofa]
gnl|UG|Ssc#S20937540	625	179.94	218	62.32	621	186.63	"AJ649263 CSEQRAN19 Sus scrofa cDNA clone C0003272_A02, mRNA sequence /clone=C0003272_A02 /gb=AJ649263 /gi=49326108 /ug=Ssc.85596 /len=510"	GO:0032991//macromolecular complex;GO:0015630//microtubule cytoskeleton	GO:0032561;GO:0017111//nucleoside-triphosphatase activity	GO:0043623//cellular protein complex assembly;GO:0007017//microtubule-based process	gi|281348541|gb|EFB24125.1|/6.35363e-89/hypothetical protein PANDA_011376 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S16770884	3	0.86	0	0	0	0	"853161 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF368506 /gi=34174089 /ug=Ssc.19583 /len=638"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044459//plasma membrane part	GO:0017111//nucleoside-triphosphatase activity;GO:0000166//nucleotide binding;GO:0005319//lipid transporter activity	GO:0009987//cellular process;GO:0015914//phospholipid transport;GO:0008152//metabolic process	"gi|296485397|gb|DAA27512.1|/3.88297e-73/ATP-binding cassette, sub-family A (ABC1), member 7 [Bos taurus]"
gnl|UG|Ssc#S58312474	4	1.15	3	0.86	7	2.1	"PREDICTED: Sus scrofa kinesin-like protein KIF3A-like (LOC100525739), mRNA /cds=p(157,2265) /gb=XM_003123936 /gi=311250134 /ug=Ssc.10679 /len=4006"	GO:0005815//microtubule organizing center;GO:0005819//spindle;GO:0005930//axoneme;GO:0030136//clathrin-coated vesicle;GO:0005871//kinesin complex	GO:0005515//protein binding;GO:0003777//microtubule motor activity;GO:0032559	GO:0007166//cell surface receptor linked signaling pathway;GO:0007599//hemostasis;GO:0009855//determination of bilateral symmetry;GO:0048513//organ development;GO:0043009//chordate embryonic development;GO:0047496//vesicle transport along microtubule;GO:0048858//cell projection morphogenesis;GO:0045807//positive regulation of endocytosis;GO:0009953//dorsal/ventral pattern formation;GO:0010927	gi|62089146|dbj|BAD93017.1|/0/Kinesin-like protein KIF3A variant [Homo sapiens]
gnl|UG|Ssc#S46877823	2	0.58	0	0	11	3.31	"PREDICTED: Sus scrofa lymphocyte cytosolic protein 1 (L-plastin), transcript variant 1 (LCP1), mRNA /cds=p(447,2330) /gb=XM_001929138 /gi=311266268 /ug=Ssc.49599 /len=2818"	GO:0001726//ruffle;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part;GO:0015629//actin cytoskeleton	GO:0046872//metal ion binding;GO:0003779//actin binding	GO:0007015//actin filament organization;GO:0009887//organ morphogenesis;GO:0002285;GO:0006886//intracellular protein transport;GO:0006950//response to stress	gi|194040624|ref|XP_001929173.1|/0/PREDICTED: plastin-2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55934059	14	4.03	9	2.57	9	2.7	"Sus scrofa spermine oxidase (SMOX), mRNA /cds=p(29,1693) /gb=NM_001185170 /gi=297632441 /ug=Ssc.18578 /len=2034"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0016647//oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor"	GO:0006598//polyamine catabolic process	gi|297632442|ref|NP_001172099.1|/0/spermine oxidase [Sus scrofa]
gnl|UG|Ssc#S35174203	6	1.73	0	0	8	2.4	"Sus scrofa mRNA, clone:AMP010036A04, expressed in alveolar macrophage /gb=AK230747 /gi=115545632 /ug=Ssc.14165 /len=1858"	GO:0031981//nuclear lumen	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0009207	gi|114052016|ref|NP_001039850.1|/0/probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gnl|UG|Ssc#S35172818	50	14.4	21	6	30	9.02	"Sus scrofa mRNA, clone:AMP010089F02, expressed in alveolar macrophage /gb=AK231072 /gi=115547017 /ug=Ssc.17288 /len=2141"	-	-	-	-
gnl|UG|Ssc#S20936470	3	0.86	2	0.57	3	0.9	"AJ648193 CSEQRAN19 Sus scrofa cDNA clone C0003263_O17, mRNA sequence /clone=C0003263_O17 /gb=AJ648193 /gi=49325038 /ug=Ssc.85549 /len=507"	GO:0043231//intracellular membrane-bounded organelle;GO:0030425//dendrite;GO:0044297//cell body;GO:0016020//membrane	GO:0008047//enzyme activator activity;GO:0005488//binding;GO:0060089	GO:0043087//regulation of GTPase activity;GO:0007165//signal transduction	gi|158749571|ref|NP_062210.1|/5.07599e-70/regulator of G-protein signaling 10 [Rattus norvegicus]
gnl|UG|Ssc#S46876243	0	0	5	1.43	0	0	"PREDICTED: Sus scrofa Golgi reassembly-stacking protein 2-like (LOC100154960), mRNA /cds=p(1,1737) /gb=XM_001925459 /gi=311272613 /ug=Ssc.2907 /len=2681"	-	-	-	gi|194043907|ref|XP_001925494.1|/0/PREDICTED: Golgi reassembly-stacking protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58307408	35	10.08	75	21.44	9	2.7	"PREDICTED: Sus scrofa putative zinc finger protein 724-like (LOC100511941), mRNA /cds=p(1,1155) /gb=XM_003128990 /gi=311262144 /ug=Ssc.94184 /len=1155"	-	-	-	gi|311262145|ref|XP_003129038.1|/0/PREDICTED: putative zinc finger protein 724-like [Sus scrofa]
gnl|UG|Ssc#S58314704	3	0.86	0	0	4	1.2	"PREDICTED: Sus scrofa vacuolar protein sorting-associated protein 4B-like (LOC100520820), mRNA /cds=p(243,1820) /gb=XM_003121699 /gi=311245225 /ug=Ssc.76645 /len=1820"	GO:0000323//lytic vacuole;GO:0005770//late endosome;GO:0031090//organelle membrane	GO:0016887//ATPase activity;GO:0005515//protein binding;GO:0032559	GO:0006996//organelle organization;GO:0030301//cholesterol transport;GO:0009207;GO:0030001//metal ion transport;GO:0010033//response to organic substance;GO:0032509//endosome transport via multivesicular body sorting pathway	gi|311245226|ref|XP_003121747.1|/0/PREDICTED: vacuolar protein sorting-associated protein 4B-like [Sus scrofa]
gnl|UG|Ssc#S35169984	2	0.58	2	0.57	2	0.6	"Sus scrofa mRNA, clone:TES010049B05, expressed in testis /gb=AK238515 /gi=115549855 /ug=Ssc.89974 /len=1212"	GO:0044429//mitochondrial part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|311250315|ref|XP_003124096.1|/6.21877e-31/PREDICTED: probable histidyl-tRNA synthetase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S55320215	8	2.3	2	0.57	5	1.5	"Sus scrofa mRNA, clone:THY010074C09, expressed in thymus /gb=AK351748 /gi=288784657 /ug=Ssc.44702 /len=1533"	GO:0031228//intrinsic to Golgi membrane	"GO:0016757//transferase activity, transferring glycosyl groups"	GO:0006643//membrane lipid metabolic process;GO:0005996//monosaccharide metabolic process;GO:0018065//protein-cofactor linkage	"gi|301780272|ref|XP_002925552.1|/1.20717e-128/PREDICTED: type 2 lactosamine alpha-2,3-sialyltransferase-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S58314246	18	5.18	16	4.57	21	6.31	"PREDICTED: Sus scrofa spermatid perinuclear RNA-binding protein-like (LOC100511979), mRNA /cds=p(167,2026) /gb=XM_003122157 /gi=311246430 /ug=Ssc.7727 /len=2910"	GO:0005856//cytoskeleton;GO:0043231//intracellular membrane-bounded organelle	GO:0003723//RNA binding	GO:0009612//response to mechanical stimulus;GO:0007281//germ cell development;GO:0048232//male gamete generation	gi|311246431|ref|XP_003122205.1|/0/PREDICTED: spermatid perinuclear RNA-binding protein-like [Sus scrofa]
gnl|UG|Ssc#S35173056	0	0	0	0	0	0	"Sus scrofa mRNA, clone:SPL010071B01, expressed in spleen /gb=AK237625 /gi=115546779 /ug=Ssc.53007 /len=2407"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0005515//protein binding	GO:0019216//regulation of lipid metabolic process;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007049//cell cycle;GO:0051704;GO:0006325//chromatin organization	gi|311274827|ref|XP_001925314.2|/0/PREDICTED: retinoblastoma-like protein 1 [Sus scrofa]
gnl|UG|Ssc#S55327737	3	0.86	2	0.57	11	3.31	"Sus scrofa solute carrier family 25 member 19 (SLC25A19) mRNA, complete cds /cds=p(169,1125) /gb=GQ368240 /gi=255964667 /ug=Ssc.49080 /len=1597"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0015215//nucleotide transmembrane transporter activity	GO:0006862//nucleotide transport	gi|256838113|ref|NP_001157986.1|/0/mitochondrial thiamine pyrophosphate carrier [Sus scrofa]
gnl|UG|Ssc#S58305909	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa potassium channel tetramerisation domain containing 3 (KCTD3), mRNA /cds=p(1,2451) /gb=XM_003130489 /gi=311265197 /ug=Ssc.41315 /len=4235"	GO:0005887//integral to plasma membrane	GO:0005488//binding;GO:0005267//potassium channel activity	GO:0034220//ion transmembrane transport;GO:0030001//metal ion transport	gi|311265198|ref|XP_003130537.1|/0/PREDICTED: BTB/POZ domain-containing protein KCTD3-like [Sus scrofa]
gnl|UG|Ssc#S58300882	9	2.59	7	2	3	0.9	"PREDICTED: Sus scrofa prefoldin subunit 3-like (LOC100514622), mRNA /cds=p(1,708) /gb=XM_003135506 /gi=311277244 /ug=Ssc.38134 /len=1916"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005515//protein binding	GO:0051084//'de novo' posttranslational protein folding	gi|311277245|ref|XP_003135554.1|/9.99147e-131/PREDICTED: LOW QUALITY PROTEIN: prefoldin subunit 3-like [Sus scrofa]
gnl|UG|Ssc#S18260201	36	10.36	16	4.57	11	3.31	"BP156692 full-length enriched swine cDNA library, adult spleen Sus scrofa cDNA clone SPL010019A01 5', mRNA sequence /clone=SPL010019A01 /clone_end=5' /gb=BP156692 /gi=40406165 /ug=Ssc.49515 /len=915"	-	-	-	-
gnl|UG|Ssc#S46877444	43	12.38	21	6	33	9.92	"PREDICTED: Sus scrofa exportin 7 (XPO7), mRNA /cds=p(1,3255) /gb=XM_001926755 /gi=311270304 /ug=Ssc.2144 /len=4777"	GO:0005635//nuclear envelope	GO:0017016//Ras GTPase binding;GO:0022892	GO:0050658//RNA transport;GO:0051169//nuclear transport;GO:0006605//protein targeting	gi|197100979|ref|NP_001125942.1|/0/exportin-7 [Pongo abelii] 
gnl|UG|Ssc#S46877661	5	1.44	8	2.29	14	4.21	"PREDICTED: Sus scrofa fibronectin type III domain containing 3B (FNDC3B), mRNA /cds=p(1,3531) /gb=XM_001924529 /gi=311269648 /ug=Ssc.4103 /len=6761"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0045597//positive regulation of cell differentiation	gi|311269649|ref|XP_001924564.2|/0/PREDICTED: fibronectin type III domain-containing protein 3B-like [Sus scrofa]
gnl|UG|Ssc#S19538987	3	0.86	5	1.43	2	0.6	"942457 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN155179 /gi=46169609 /ug=Ssc.94805 /len=758"	-	-	-	-
gnl|UG|Ssc#S35165498	56	16.12	139	39.73	39	11.72	"Sus scrofa mRNA, clone:UTR010022B09, expressed in uterus /gb=AK240023 /gi=115554228 /ug=Ssc.70673 /len=1876"	-	-	-	"gi|311274870|ref|XP_003134490.1|/2.15495e-29/PREDICTED: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-1-like [Sus scrofa]"
gnl|UG|Ssc#S58308761	3	0.86	6	1.72	10	3.01	"PREDICTED: Sus scrofa f-box only protein 42-like (LOC100521974), mRNA /cds=p(231,2384) /gb=XM_003127635 /gi=311258582 /ug=Ssc.62591 /len=2631"	-	-	-	gi|311258583|ref|XP_003127683.1|/0/PREDICTED: f-box only protein 42-like [Sus scrofa]
gnl|UG|Ssc#S39928548	5	1.44	3	0.86	3	0.9	"rcst04_l13.y1 cst Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW023613 /gi=181269253 /ug=Ssc.65913 /len=568"	-	-	-	-
gnl|UG|Ssc#S55319239	11	3.17	8	2.29	13	3.91	"Sus scrofa mRNA, clone:LVRM10186F11, expressed in liver /gb=AK346453 /gi=288785645 /ug=Ssc.47463 /len=1867"	GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle	GO:0048029//monosaccharide binding	GO:0006950//response to stress;GO:0016337//cell-cell adhesion	gi|149721753|ref|XP_001496442.1|/7.40637e-131/PREDICTED: similar to Collectin-10 precursor (Collectin liver protein 1) (CL-L1) (Collectin-34) [Equus caballus]
gnl|UG|Ssc#S35170667	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LNG010031F09, expressed in lung /gb=AK231848 /gi=115549172 /ug=Ssc.859 /len=1295"	GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|297689674|ref|XP_002822268.1|/3.2414e-92/PREDICTED: 39S ribosomal protein L48, mitochondrial-like [Pongo abelii]"
gnl|UG|Ssc#S58315213	19	5.47	10	2.86	12	3.61	"PREDICTED: Sus scrofa TATA box-binding protein-like protein 1-like, transcript variant 1 (LOC100517563), mRNA /cds=p(304,864) /gb=XM_003121192 /gi=311243910 /ug=Ssc.58875 /len=1655"	GO:0005667//transcription factor complex	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding	"GO:0006352//transcription initiation, DNA-dependent;GO:0048232//male gamete generation;GO:0009212//pyrimidine deoxyribonucleoside triphosphate biosynthetic process;GO:0006997//nucleus organization;GO:0007275//multicellular organismal development;GO:0003006//developmental process involved in reproduction"	gi|149640187|ref|XP_001506923.1|/4.79477e-107/PREDICTED: similar to 21-kDa TBP-like protein [Ornithorhynchus anatinus]
gnl|UG|Ssc#S55318617	15	4.32	3	0.86	10	3.01	"Sus scrofa mRNA, clone:MLN010068D11, expressed in mesenteric lymph nodes /gb=AK346875 /gi=288786267 /ug=Ssc.23888 /len=1947"	GO:0043005//neuron projection;GO:0044424//intracellular part	GO:0005488//binding	GO:0006412//translation;GO:0042692//muscle cell differentiation;GO:0006576//cellular biogenic amine metabolic process;GO:0021533//cell differentiation in hindbrain;GO:0014706//striated muscle tissue development;GO:0042246//tissue regeneration	"gi|302148690|pdb|3AAA|C/2.6461e-62/Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1"
gnl|UG|Ssc#S58304263	4	1.15	0	0	4	1.2	"PREDICTED: Sus scrofa hypothetical protein LOC100523512 (LOC100523512), mRNA /cds=p(206,2521) /gb=XM_003132135 /gi=311268726 /ug=Ssc.93320 /len=2521"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311268727|ref|XP_003132183.1|/0/PREDICTED: hypothetical protein LOC100523512 [Sus scrofa]
gnl|UG|Ssc#S58310094	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa prolow-density lipoprotein receptor-related protein 1-like (LOC100519774), mRNA /cds=p(1,1782) /gb=XM_003126326 /gi=311255761 /ug=Ssc.41019 /len=1944"	GO:0043005//neuron projection;GO:0005626//insoluble fraction;GO:0030135//coated vesicle;GO:0044297//cell body;GO:0016021//integral to membrane	GO:0046872//metal ion binding;GO:0034185//apolipoprotein binding	GO:0006909//phagocytosis;GO:0044260;GO:0016055//Wnt receptor signaling pathway;GO:0051050//positive regulation of transport;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0010874//regulation of cholesterol efflux;GO:0045767//regulation of anti-apoptosis;GO:0010517//regulation of phospholipase activity;GO:0032502//developmental process	gi|311255762|ref|XP_003126374.1|/0/PREDICTED: prolow-density lipoprotein receptor-related protein 1-like [Sus scrofa]
gnl|UG|Ssc#S55325282	16	4.61	45	12.86	16	4.81	"Sus scrofa mRNA, clone:PTG010057B10, expressed in pituitary gland /gb=AK349369 /gi=288779544 /ug=Ssc.51958 /len=1479"	GO:0044464//cell part	-	-	gi|311267991|ref|XP_003131829.1|/2.75415e-130/PREDICTED: tumor protein p53-inducible protein 13-like [Sus scrofa]
gnl|UG|Ssc#S35168716	0	0	0	0	4	1.2	"Sus scrofa mRNA, clone:THY010035G01, expressed in thymus /gb=AK238835 /gi=115550974 /ug=Ssc.36456 /len=1823"	-	-	-	gi|258676922|gb|ACV87314.1|/7.24136e-06/IL-23 [Sus scrofa]
gnl|UG|Ssc#S35171889	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10032B11, expressed in ovary /gb=AK234923 /gi=115547946 /ug=Ssc.84224 /len=1931"	GO:0080008//CUL4 RING ubiquitin ligase complex;GO:0043231//intracellular membrane-bounded organelle	"GO:0005488//binding;GO:0042623//ATPase activity, coupled"	GO:0006511//ubiquitin-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation;GO:0032460;GO:0009207;GO:0032092//positive regulation of protein binding;GO:0034220//ion transmembrane transport	gi|115495923|ref|NP_001068995.1|/0/protein cereblon [Bos taurus]
gnl|UG|Ssc#S55325271	5	1.44	0	0	2	0.6	"Sus scrofa mRNA, clone:PTG010059C11, expressed in pituitary gland /gb=AK349380 /gi=288779555 /ug=Ssc.7939 /len=1314"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0005488//binding	"GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|195539474|ref|NP_001124207.1|/7.8774e-102/survival motor neuron protein [Sus scrofa]
gnl|UG|Ssc#S35166580	0	0	2	0.57	3	0.9	"Sus scrofa mRNA, clone:THY010201B06, expressed in thymus /gb=AK239745 /gi=115553159 /ug=Ssc.5322 /len=1294"	-	-	-	gi|311258344|ref|XP_003127567.1|/2.40387e-87/PREDICTED: UPF0688 protein C1orf174-like [Sus scrofa]
gnl|UG|Ssc#S20935472	0	0	4	1.14	3	0.9	"AJ647195 CSEQRAN19 Sus scrofa cDNA clone C0003105_A03, mRNA sequence /clone=C0003105_A03 /gb=AJ647195 /gi=49324040 /ug=Ssc.85496 /len=440"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005506//iron ion binding	GO:0006778//porphyrin metabolic process;GO:0048511//rhythmic process	gi|195540095|gb|AAI68221.1|/4.11242e-82/Hebp1 protein [Rattus norvegicus]
gnl|UG|Ssc#S58303752	9	2.59	3	0.86	5	1.5	"PREDICTED: Sus scrofa IQ calmodulin-binding motif-containing protein 1-like (LOC100521475), mRNA /cds=p(1,1797) /gb=XM_003132645 /gi=311269928 /ug=Ssc.6908 /len=2143"	GO:0031513//nonmotile primary cilium	GO:0005515//protein binding	GO:0045596//negative regulation of cell differentiation;GO:0043954//cellular component maintenance	gi|311269929|ref|XP_003132693.1|/0/PREDICTED: IQ calmodulin-binding motif-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58309046	7	2.02	6	1.72	6	1.8	"PREDICTED: Sus scrofa cyclic AMP-dependent transcription factor ATF-5-like (LOC100523675), mRNA /cds=p(120,1172) /gb=XM_003127356 /gi=311258007 /ug=Ssc.51934 /len=1172"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0005488//binding	"GO:0045686//negative regulation of glial cell differentiation;GO:0007049//cell cycle;GO:0006355//regulation of transcription, DNA-dependent;GO:0008283//cell proliferation;GO:0043066//negative regulation of apoptosis"	gi|311258008|ref|XP_003127404.1|/2.51974e-133/PREDICTED: cyclic AMP-dependent transcription factor ATF-5-like [Sus scrofa]
gnl|UG|Ssc#S35166417	32	9.21	39	11.15	31	9.32	"Sus scrofa mRNA, clone:LVRM10083C02, expressed in liver /gb=AK233119 /gi=115553321 /ug=Ssc.44741 /len=1544"	-	-	-	gi|258676922|gb|ACV87314.1|/1.59002e-11/IL-23 [Sus scrofa]
gnl|UG|Ssc#S20935303	65	18.71	44	12.58	144	43.28	"AJ647026 CSEQRAN19 Sus scrofa cDNA clone C0003104_G21, mRNA sequence /clone=C0003104_G21 /gb=AJ647026 /gi=49323871 /ug=Ssc.85485 /len=480"	GO:0031228//intrinsic to Golgi membrane	-	GO:0048193//Golgi vesicle transport	gi|13385882|ref|NP_080671.1|/1.8585e-30/protein RER1 [Mus musculus]
gnl|UG|Ssc#S18354212	7	2.02	7	2	8	2.4	"893240 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK449653 /gi=40796867 /ug=Ssc.61964 /len=616"	-	-	-	-
gnl|UG|Ssc#S58308229	24	6.91	9	2.57	16	4.81	"PREDICTED: Sus scrofa serine/threonine-protein kinase RIO1-like (LOC100157926), mRNA /cds=p(145,1842) /gb=XM_003128167 /gi=311259693 /ug=Ssc.33403 /len=2278"	-	GO:0004672//protein kinase activity;GO:0032559	GO:0006796//phosphate metabolic process	gi|311259694|ref|XP_003128215.1|/0/PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase RIO1-like [Sus scrofa]
gnl|UG|Ssc#S6077334	0	0	0	0	0	0	"UNL-P-FN-df-a-12-0-UNL.s1 UNL-P-FN Sus scrofa cDNA clone UNL-P-FN-df-a-12-0-UNL 3', mRNA sequence /clone=UNL-P-FN-df-a-12-0-UNL /clone_end=3' /gb=BI185892 /gi=14660301 /ug=Ssc.5579 /len=767"	GO:0016020//membrane	-	-	gi|311246898|ref|XP_003122381.1|/2.08931e-51/PREDICTED: transmembrane protein 141-like [Sus scrofa]
gnl|UG|Ssc#S55247483	0	0	0	0	2	0.6	"FS699230 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010028H09 5', mRNA sequence /clone=PST010028H09 /clone_end=5' /gb=FS699230 /gi=288241585 /ug=Ssc.83909 /len=886"	-	-	-	-
gnl|UG|Ssc#S46876866	7	2.02	0	0	0	0	"PREDICTED: Sus scrofa UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) (GALNT2), mRNA /cds=p(25,1740) /gb=XM_001927774 /gi=194042622 /ug=Ssc.72072 /len=1740"	GO:0031228//intrinsic to Golgi membrane	GO:0046914//transition metal ion binding;GO:0008376//acetylgalactosaminyltransferase activity;GO:0030246//carbohydrate binding	GO:0006493//protein O-linked glycosylation;GO:0002377//immunoglobulin production	gi|194042623|ref|XP_001927809.1|/0/PREDICTED: polypeptide N-acetylgalactosaminyltransferase 2 [Sus scrofa]
gnl|UG|Ssc#S19543384	26	7.49	25	7.15	31	9.32	"948065 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN159042 /gi=46173472 /ug=Ssc.82349 /len=905"	-	-	-	-
gnl|UG|Ssc#S58304525	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa ankyrin repeat and FYVE domain containing 1 (ANKFY1), mRNA /cds=p(1,3408) /gb=XM_003131883 /gi=311268162 /ug=Ssc.25633 /len=4000"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	GO:0016192//vesicle-mediated transport	gi|311268163|ref|XP_003131931.1|/0/PREDICTED: ankyrin repeat and FYVE domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58313256	3	0.86	2	0.57	3	0.9	"PREDICTED: Sus scrofa insulin receptor (INSR), mRNA /cds=p(1,1329) /gb=XM_003123154 /gi=311248541 /ug=Ssc.15986 /len=1329"	-	-	-	-
gnl|UG|Ssc#S58307846	380	109.4	1323	378.18	334	100.38	"PREDICTED: Sus scrofa large neutral amino acids transporter small subunit 2-like (LOC100522330), mRNA /cds=p(758,2347) /gb=XM_003128550 /gi=311261001 /ug=Ssc.25032 /len=4806"	GO:0016021//integral to membrane;GO:0044459//plasma membrane part;GO:0044424//intracellular part	GO:0015171//amino acid transmembrane transporter activity;GO:0008324//cation transmembrane transporter activity;GO:0003823//antigen binding	GO:0019752//carboxylic acid metabolic process;GO:0055080//cation homeostasis;GO:0002376//immune system process;GO:0042221//response to chemical stimulus;GO:0006807//nitrogen compound metabolic process;GO:0007599//hemostasis;GO:0006812//cation transport;GO:0006865//amino acid transport	gi|311261002|ref|XP_003128598.1|/0/PREDICTED: large neutral amino acids transporter small subunit 2-like [Sus scrofa]
gnl|UG|Ssc#S58311033	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa mesogenin-1-like (LOC100520488), mRNA /cds=p(1,855) /gb=XM_003125358 /gi=311253087 /ug=Ssc.93880 /len=855"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0009952//anterior/posterior pattern formation;GO:0048869	gi|311253088|ref|XP_003125406.1|/3.57763e-114/PREDICTED: mesogenin-1-like [Sus scrofa]
gnl|UG|Ssc#S35166468	4	1.15	0	0	2	0.6	"Sus scrofa mRNA, clone:LVRM10077E04, expressed in liver /gb=AK233068 /gi=115553270 /ug=Ssc.1209 /len=1557"	GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0016823	GO:0006525//arginine metabolic process;GO:0006558//L-phenylalanine metabolic process;GO:0006570//tyrosine metabolic process	gi|194039533|ref|XP_001928445.1|/0/PREDICTED: fumarylacetoacetase-like [Sus scrofa]
gnl|UG|Ssc#S35164867	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10201C03, expressed in liver /gb=AK233671 /gi=115554859 /ug=Ssc.19360 /len=1688"	GO:0031228//intrinsic to Golgi membrane	GO:0046872//metal ion binding;GO:0015924	GO:0006029//proteoglycan metabolic process;GO:0019318//hexose metabolic process;GO:0006487//protein N-linked glycosylation	"gi|296490064|gb|DAA32177.1|/0/mannosidase, alpha, class 1C, member 1 [Bos taurus]"
gnl|UG|Ssc#S35169129	4	1.15	13	3.72	5	1.5	"Sus scrofa mRNA, clone:OVRM10115B09, expressed in ovary /gb=AK235784 /gi=115550710 /ug=Ssc.29150 /len=2448"	GO:0000323//lytic vacuole	GO:0008484//sulfuric ester hydrolase activity;GO:0043169//cation binding	-	gi|4557659|ref|NP_000193.1|/0/iduronate 2-sulfatase isoform a precursor [Homo sapiens]
gnl|UG|Ssc#S58310902	9	2.59	0	0	13	3.91	"PREDICTED: Sus scrofa transmembrane protein 65-like (LOC100515827), mRNA /cds=p(1,708) /gb=XM_003125500 /gi=311253408 /ug=Ssc.68537 /len=1240"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311253409|ref|XP_003125548.1|/6.33714e-98/PREDICTED: transmembrane protein 65-like [Sus scrofa]
gnl|UG|Ssc#S46877207	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa golgi brefeldin A resistant guanine nucleotide exchange factor 1 (GBF1), mRNA /cds=p(274,5859) /gb=XM_001928393 /gi=311271761 /ug=Ssc.26284 /len=6419"	GO:0044432//endoplasmic reticulum part;GO:0042579//microbody;GO:0012505//endomembrane system;GO:0044431//Golgi apparatus part	GO:0005083//small GTPase regulator activity;GO:0005488//binding	GO:0019222//regulation of metabolic process;GO:0032011//ARF protein signal transduction;GO:0048200	gi|194041915|ref|XP_001928428.1|/0/PREDICTED: Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 [Sus scrofa]
gnl|UG|Ssc#S55517415	2	0.58	0	0	0	0	"Sus scrofa peroxisome proliferator-activated receptor delta (PPARD) mRNA, complete cds /cds=p(102,1427) /gb=GU565977 /gi=294494648 /ug=Ssc.15972 /len=2717"	-	-	-	-
gnl|UG|Ssc#S35165759	5	1.44	2	0.57	8	2.4	"Sus scrofa mRNA, clone:LVRM10095C04, expressed in liver /gb=AK233176 /gi=115553967 /ug=Ssc.959 /len=2962"	GO:0031224//intrinsic to membrane;GO:0030867//rough endoplasmic reticulum membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0043021//ribonucleoprotein binding;GO:0004871//signal transducer activity;GO:0032561	GO:0023052//signaling;GO:0009207;GO:0006613//cotranslational protein targeting to membrane	gi|311264316|ref|XP_003130104.1|/0/PREDICTED: signal recognition particle receptor subunit alpha-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S23696826	19	5.47	20	5.72	34	10.22	"1105408 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN107929 /gi=59783361 /ug=Ssc.55464 /len=841"	GO:0043234//protein complex;GO:0044451//nucleoplasm part;GO:0000803	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding;GO:0019787//small conjugating protein ligase activity	GO:0001501//skeletal system development;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0016570//histone modification;GO:0048562//embryonic organ morphogenesis;GO:0031398//positive regulation of protein ubiquitination;GO:0043009//chordate embryonic development;GO:0003002//regionalization;GO:0006915//apoptosis	gi|149723900|ref|XP_001501632.1|/2.47898e-152/PREDICTED: similar to Polycomb group RING finger protein 2 (DNA-binding protein Mel-18) (RING finger protein 110) (Zinc finger protein 144) [Equus caballus]
gnl|UG|Ssc#S46879308	190	54.7	63	18.01	254	76.33	"PREDICTED: Sus scrofa PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) (PAN2), mRNA /cds=p(253,3849) /gb=XM_001929293 /gi=194037543 /ug=Ssc.6592 /len=4864"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0000175//3'-5'-exoribonuclease activity;GO:0005488//binding;GO:0016790//thiolester hydrolase activity	"GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;GO:0019941//modification-dependent protein catabolic process"	gi|194037544|ref|XP_001929328.1|/0/PREDICTED: PAB-dependent poly(A)-specific ribonuclease subunit 2 [Sus scrofa]
gnl|UG|Ssc#S26387436	5	1.44	0	0	3	0.9	"BW977128 full-length enriched swine cDNA library, adult intestine Sus scrofa cDNA clone ITT010012H02 5', mRNA sequence /clone=ITT010012H02 /clone_end=5' /gb=BW977128 /gi=71954917 /ug=Ssc.26871 /len=906"	GO:0043231//intracellular membrane-bounded organelle	GO:0003712//transcription cofactor activity;GO:0016790//thiolester hydrolase activity;GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0019783//small conjugating protein-specific protease activity;GO:0032182//small conjugating protein binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0051260//protein homooligomerization;GO:0019941//modification-dependent protein catabolic process;GO:0000087//M phase of mitotic cell cycle;GO:0016570//histone modification"	gi|74001074|ref|XP_848330.1|/9.73259e-105/PREDICTED: similar to ubiquitin specific protease 16 isoform a isoform 2 [Canis familiaris]
gnl|UG|Ssc#S22415864	3	0.86	0	0	2	0.6	"Sus scrofa solute carrier family 9 (sodium/hydrogen exchanger), member 1 (SLC9A1), mRNA /cds=p(229,2685) /gb=NM_001007103 /gi=55741757 /ug=Ssc.16192 /len=2890"	-	-	-	-
gnl|UG|Ssc#S55248141	6	1.73	0	0	8	2.4	"FS699882 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010039D04 5', mRNA sequence /clone=PST010039D04 /clone_end=5' /gb=FS699882 /gi=288238967 /ug=Ssc.64250 /len=896"	GO:0044425//membrane part;GO:0005783//endoplasmic reticulum	GO:0046872//metal ion binding;GO:0016491//oxidoreductase activity;GO:0005198//structural molecule activity	GO:0009987//cellular process;GO:0003012//muscle system process;GO:0008152//metabolic process;GO:0032502//developmental process	gi|27807467|ref|NP_777182.1|/2.71403e-75/aspartyl/asparaginyl beta-hydroxylase [Bos taurus]
gnl|UG|Ssc#S46612114	3	0.86	0	0	6	1.8	"Sus scrofa transient receptor potential cation channel subfamily V member 4 (TRPV4) mRNA, complete cds /cds=p(1,2616) /gb=EU784669 /gi=192764515 /ug=Ssc.50368 /len=2616"	GO:0030427//site of polarized growth;GO:0015629//actin cytoskeleton;GO:0005874//microtubule;GO:0001726//ruffle;GO:0005924//cell-substrate adherens junction;GO:0031224//intrinsic to membrane	GO:0019901//protein kinase binding;GO:0005261//cation channel activity;GO:0003779//actin binding;GO:0015631//tubulin binding;GO:0004888//transmembrane receptor activity	GO:0009605//response to external stimulus;GO:0010975//regulation of neuron projection development;GO:0006972//hyperosmotic response;GO:0030036//actin cytoskeleton organization;GO:0051480//cytosolic calcium ion homeostasis;GO:0080134//regulation of response to stress;GO:0034329//cell junction assembly;GO:0007165//signal transduction;GO:0030865//cortical cytoskeleton organization;GO:0030072//peptide hormone secretion;GO:0007019//microtubule depolymerization;GO:0070588//calcium ion transmembrane transport	gi|195539478|ref|NP_001124201.1|/0/transient receptor potential cation channel subfamily V member 4 [Sus scrofa]
gnl|UG|Ssc#S23213246	34	9.79	14	4	19	5.71	"Sus scrofa clone Clu_2997.scr.msk.p1.Contig2, mRNA sequence /gb=AY609762 /gi=52351330 /ug=Ssc.17285 /len=1319"	-	-	-	-
gnl|UG|Ssc#S46878418	499	143.66	206	58.88	325	97.67	"PREDICTED: Sus scrofa heat shock 90kD protein 1, beta, transcript variant 1 (HSPCB), mRNA /cds=p(392,2566) /gb=XM_001929570 /gi=311260514 /ug=Ssc.6728 /len=2835"	GO:0000267//cell fraction;GO:0048770;GO:0005903//brush border;GO:0044459//plasma membrane part	GO:0032561;GO:0032557//pyrimidine ribonucleotide binding;GO:0032558//adenyl deoxyribonucleotide binding;GO:0019904//protein domain specific binding;GO:0032559;GO:0030234//enzyme regulator activity	GO:0001959//regulation of cytokine-mediated signaling pathway;GO:0031328//positive regulation of cellular biosynthetic process;GO:0044267//cellular protein metabolic process;GO:0031330;GO:0048513//organ development;GO:0006970//response to osmotic stress;GO:0014070//response to organic cyclic compound;GO:0006935//chemotaxis	gi|194039391|ref|XP_001929605.1|/0/PREDICTED: heat shock cognate protein HSP 90-beta isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55325137	10	2.88	2	0.57	13	3.91	"Sus scrofa mRNA, clone:PTG010080C06, expressed in pituitary gland /gb=AK349471 /gi=288779735 /ug=Ssc.73739 /len=1672"	GO:0031234//extrinsic to internal side of plasma membrane;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0060089	GO:0007267//cell-cell signaling;GO:0033762//response to glucagon stimulus;GO:0009207;GO:0015980//energy derivation by oxidation of organic compounds;GO:0007166//cell surface receptor linked signaling pathway;GO:0008015//blood circulation	gi|300797420|ref|NP_001179276.1|/0/guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 [Bos taurus]
gnl|UG|Ssc#S58303888	16	4.61	53	15.15	13	3.91	"PREDICTED: Sus scrofa schwannomin-interacting protein 1-like (LOC100514494), mRNA /cds=p(1,2163) /gb=XM_003132510 /gi=311269590 /ug=Ssc.6666 /len=2753"	GO:0044424//intracellular part	GO:0005515//protein binding	-	gi|311269591|ref|XP_003132558.1|/0/PREDICTED: schwannomin-interacting protein 1-like [Sus scrofa]
gnl|UG|Ssc#S23213245	0	0	23	6.57	6	1.8	"Sus scrofa clone Clu_29974.scr.msk.p1.Contig1, mRNA sequence /gb=AY609763 /gi=52351331 /ug=Ssc.24223 /len=2000"	GO:0015934//large ribosomal subunit;GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|301777191|ref|XP_002924018.1|/1.06009e-94/PREDICTED: nucleolar protein of 40 kDa-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35173481	21	6.05	6	1.72	10	3.01	"Sus scrofa mRNA, clone:AMP010057H06, expressed in alveolar macrophage /gb=AK230873 /gi=115546354 /ug=Ssc.19509 /len=3480"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	GO:0032934//sterol binding;GO:0004772//sterol O-acyltransferase activity;GO:0005504//fatty acid binding	GO:0055092//sterol homeostasis;GO:0090077;GO:0034434//sterol esterification;GO:0030301//cholesterol transport;GO:0016125//sterol metabolic process;GO:0019915//lipid storage;GO:0034377;GO:0010560//positive regulation of glycoprotein biosynthetic process	gi|73961286|ref|XP_547445.2|/0/PREDICTED: similar to Sterol O-acyltransferase 1 (Cholesterol acyltransferase 1) (Acyl coenzyme A:cholesterol acyltransferase 1) (ACAT-1) [Canis familiaris]
gnl|UG|Ssc#S38794848	7	2.02	0	0	3	0.9	"Sus scrofa fatty acid synthase (FASN) mRNA, complete cds /cds=p(14,7552) /gb=EF589048 /gi=148733528 /ug=Ssc.18175 /len=8044"	GO:0016020//membrane;GO:0000267//cell fraction;GO:0048770	GO:0046914//transition metal ion binding;GO:0050661//NADP binding;GO:0022892;GO:0042802//identical protein binding;GO:0016297//acyl-[acyl-carrier-protein] hydrolase activity;GO:0019842//vitamin binding	GO:0051234//establishment of localization;GO:0015980//energy derivation by oxidation of organic compounds;GO:0006575//cellular modified amino acid metabolic process;GO:0009893//positive regulation of metabolic process;GO:0035336//long-chain fatty-acyl-CoA metabolic process;GO:0006766//vitamin metabolic process;GO:0006631//fatty acid metabolic process;GO:0006641//triglyceride metabolic process	"gi|198443141|pdb|2VZ8|A/0/Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase"
gnl|UG|Ssc#S17511884	36	10.36	74	21.15	15	4.51	"BX666727 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0025.e.19 3prim, mRNA sequence /clone=scac0025.e.19 /clone_end=3' /gb=BX666727 /gi=116666501 /ug=Ssc.22750 /len=820"	-	-	-	-
gnl|UG|Ssc#S58301881	364	104.8	153	43.73	401	120.51	"PREDICTED: Sus scrofa extended synaptotagmin-2-like (LOC100525317), mRNA /cds=p(1,2280) /gb=XM_003134515 /gi=311275074 /ug=Ssc.1817 /len=4862"	GO:0031224//intrinsic to membrane	-	-	gi|311275075|ref|XP_003134563.1|/0/PREDICTED: extended synaptotagmin-2-like [Sus scrofa]
gnl|UG|Ssc#S35167905	17	4.89	9	2.57	13	3.91	"Sus scrofa mRNA, clone:OVRM10167D09, expressed in ovary /gb=AK236241 /gi=115551834 /ug=Ssc.19675 /len=3087"	GO:0015630//microtubule cytoskeleton;GO:0030141//stored secretory granule	GO:0043169//cation binding;GO:0008047//enzyme activator activity;GO:0015631//tubulin binding	GO:0035556//intracellular signal transduction;GO:0000912//assembly of actomyosin apparatus involved in cell cycle cytokinesis;GO:0000920//cytokinetic cell separation;GO:0015698//inorganic anion transport;GO:0048232//male gamete generation;GO:0009966//regulation of signal transduction;GO:0007017//microtubule-based process;GO:0007599//hemostasis;GO:0048699//generation of neurons	gi|149714527|ref|XP_001504284.1|/0/PREDICTED: Rac GTPase activating protein 1 [Equus caballus]
gnl|UG|Ssc#S35167266	9	2.59	5	1.43	13	3.91	"Sus scrofa mRNA, clone:OVRM10196F03, expressed in ovary /gb=AK236478 /gi=115552473 /ug=Ssc.1422 /len=2329"	GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0016274//protein-arginine N-methyltransferase activity	"GO:0035247//peptidyl-arginine omega-N-methylation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0034969//histone arginine methylation;GO:0000398//nuclear mRNA splicing, via spliceosome;GO:0007067//mitosis"	gi|229892828|ref|NP_001153565.1|/0/protein arginine N-methyltransferase 5 [Sus scrofa]
gnl|UG|Ssc#S58304466	809	232.92	751	214.67	442	132.83	"PREDICTED: Sus scrofa serine/threonine-protein phosphatase dullard-like (LOC100519213), mRNA /cds=p(1,798) /gb=XM_003131937 /gi=311268283 /ug=Ssc.3301 /len=1381"	-	-	-	-
gnl|UG|Ssc#S40368514	64	18.43	50	14.29	29	8.72	"rnmm17c_a20.y1 nmm Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW463121 /gi=182724958 /ug=Ssc.92116 /len=199"	-	-	-	-
gnl|UG|Ssc#S23771331	4	1.15	0	0	2	0.6	"1143053 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN128950 /gi=59823229 /ug=Ssc.15600 /len=852"	-	-	-	-
gnl|UG|Ssc#S58306728	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) (PRKRIR), mRNA /cds=p(1,2214) /gb=XM_003129675 /gi=311263525 /ug=Ssc.19828 /len=3196"	GO:0043231//intracellular membrane-bounded organelle	"GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0005515//protein binding;GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0050896//response to stimulus;GO:0008283//cell proliferation;GO:0006796//phosphate metabolic process;GO:0023052//signaling	gi|311263526|ref|XP_003129723.1|/0/PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase-like [Sus scrofa]
gnl|UG|Ssc#S26712694	77	22.17	95	27.16	50	15.03	"AJ948778 KN404_1 Sus scrofa cDNA clone C0007736n15 3', mRNA sequence /clone=C0007736n15 /clone_end=3' /gb=AJ948778 /gi=74365594 /ug=Ssc.36892 /len=547"	-	-	-	-
gnl|UG|Ssc#S20946388	16	4.61	2	0.57	17	5.11	"AJ658111 KN277 Sus scrofa cDNA clone C0005211_J19, mRNA sequence /clone=C0005211_J19 /gb=AJ658111 /gi=49342180 /ug=Ssc.62757 /len=729"	GO:0044464//cell part	GO:0046872//metal ion binding	-	gi|301788202|ref|XP_002929518.1|/3.3978e-109/PREDICTED: zinc finger protein 596-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S23212487	0	0	2	0.57	2	0.6	"Sus scrofa clone Clu_22329.scr.msk.p1.Contig2, mRNA sequence /gb=AY609634 /gi=52352714 /ug=Ssc.1647 /len=1704"	GO:0005815//microtubule organizing center;GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle;GO:0072372//primary cilium;GO:0031090//organelle membrane;GO:0019861//flagellum	GO:0005515//protein binding	GO:0031647//regulation of protein stability;GO:0009296//flagellum assembly;GO:0010970//microtubule-based transport	gi|126326940|ref|XP_001380694.1|/1.72308e-163/PREDICTED: similar to RGD1307682 protein [Monodelphis domestica]
gnl|UG|Ssc#S46876820	198	57.01	221	63.17	188	56.5	"PREDICTED: Sus scrofa jumonji domain containing 1C, transcript variant 1 (JMJD1C), partial mRNA /cds=p(1,7437) /gb=XM_001927826 /gi=311271258 /ug=Ssc.4677 /len=8259"	GO:0031981//nuclear lumen	"GO:0043169//cation binding;GO:0032452//histone demethylase activity;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0008134//transcription factor binding"	"GO:0070076//histone lysine demethylation;GO:0007599//hemostasis;GO:0006351//transcription, DNA-dependent"	"gi|311271259|ref|XP_001927861.2|/0/PREDICTED: LOW QUALITY PROTEIN: probable JmjC domain-containing histone demethylation protein 2C isoform 1, partial [Sus scrofa]"
gnl|UG|Ssc#S58306488	16	4.61	25	7.15	8	2.4	"PREDICTED: Sus scrofa ubiquitin conjugation factor E4 A-like (LOC100513674), mRNA /cds=p(134,3358) /gb=XM_003129907 /gi=311264013 /ug=Ssc.30196 /len=3420"	GO:0043234//protein complex	GO:0005488//binding;GO:0004842//ubiquitin-protein ligase activity	GO:0019941//modification-dependent protein catabolic process	gi|311264014|ref|XP_003129955.1|/0/PREDICTED: ubiquitin conjugation factor E4 A-like [Sus scrofa]
gnl|UG|Ssc#S35164182	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:SPL010008H05, expressed in spleen /gb=AK237176 /gi=115555544 /ug=Ssc.38817 /len=2331"	-	-	-	gi|292630325|ref|XP_002667834.1|/5.25001e-07/PREDICTED: superkiller viralicidic activity 2-like [Danio rerio]
gnl|UG|Ssc#S58312723	13	3.74	13	3.72	10	3.01	"PREDICTED: Sus scrofa Fas associated factor family member 2 (FAF2), mRNA /cds=p(49,1386) /gb=XM_003123660 /gi=311249624 /ug=Ssc.25192 /len=1886"	GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0006950//response to stress	gi|114603543|ref|XP_518117.2|/0/PREDICTED: UBX domain containing 8 [Pan troglodytes]
gnl|UG|Ssc#S35170566	157	45.2	135	38.59	328	98.57	"Sus scrofa mRNA, clone:OVRM10056G02, expressed in ovary /gb=AK235193 /gi=115549273 /ug=Ssc.35993 /len=1742"	-	-	-	gi|55959790|emb|CAI13166.1|/1.3884e-14/novel protein [Homo sapiens]
gnl|UG|Ssc#S55318363	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:MLN010089D03, expressed in mesenteric lymph nodes /gb=AK347003 /gi=288786521 /ug=Ssc.75766 /len=1115"	GO:0044424//intracellular part	GO:0005488//binding;GO:0019787//small conjugating protein ligase activity	GO:0070647//protein modification by small protein conjugation or removal;GO:0006810//transport;GO:0006914//autophagy	gi|298231119|ref|NP_001177210.1|/6.64137e-96/autophagy-related protein 10 [Sus scrofa]
gnl|UG|Ssc#S58303088	0	0	6	1.72	3	0.9	"PREDICTED: Sus scrofa transmembrane protein 177-like (LOC100523095), mRNA /cds=p(42,977) /gb=XM_003133310 /gi=311272229 /ug=Ssc.93768 /len=1420"	GO:0016020//membrane	-	-	gi|311272230|ref|XP_003133358.1|/5.01477e-158/PREDICTED: transmembrane protein 177-like [Sus scrofa]
gnl|UG|Ssc#S35172528	13	3.74	3	0.86	6	1.8	"Sus scrofa mRNA, clone:OVRM10005H01, expressed in ovary /gb=AK234680 /gi=115547307 /ug=Ssc.5441 /len=1946"	GO:0031224//intrinsic to membrane	-	-	gi|115496598|ref|NP_001068801.1|/0/protein GPR108 precursor [Bos taurus]
gnl|UG|Ssc#S58309413	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa TOX high mobility group box family member 3-like (LOC100519713), mRNA /cds=p(1,1809) /gb=XM_003126986 /gi=311257260 /ug=Ssc.60040 /len=1895"	-	GO:0042802//identical protein binding;GO:0030528//transcription regulator activity;GO:0010843//promoter binding	GO:0045767//regulation of anti-apoptosis	gi|311257261|ref|XP_003127034.1|/0/PREDICTED: TOX high mobility group box family member 3-like [Sus scrofa]
gnl|UG|Ssc#S46878421	19	5.47	10	2.86	22	6.61	"PREDICTED: Sus scrofa transmembrane protein 63B (TMEM63B), mRNA /cds=p(1,2811) /gb=XM_001929553 /gi=311260510 /ug=Ssc.29679 /len=2872"	GO:0031224//intrinsic to membrane	GO:0005488//binding	-	gi|311260511|ref|XP_001929588.2|/0/PREDICTED: transmembrane protein 63B [Sus scrofa]
gnl|UG|Ssc#S58307169	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa methyltransferase-like protein 14-like (LOC100525761), mRNA /cds=p(1,1851) /gb=XM_003129231 /gi=311262628 /ug=Ssc.56509 /len=3045"	GO:0043231//intracellular membrane-bounded organelle	GO:0008174//mRNA methyltransferase activity	GO:0006730//one-carbon metabolic process;GO:0009451//RNA modification	gi|311262629|ref|XP_003129279.1|/0/PREDICTED: methyltransferase-like protein 14-like [Sus scrofa]
gnl|UG|Ssc#S38676051	2	0.58	0	0	0	0	"Sus scrofa progesterone receptor membrane component 2 (PGRMC2), mRNA /cds=p(26,697) /gb=NM_001097521 /gi=163310772 /ug=Ssc.10404 /len=1858"	GO:0031224//intrinsic to membrane	GO:0004879//ligand-dependent nuclear receptor activity;GO:0008289//lipid binding;GO:0005506//iron ion binding	GO:0009755//hormone-mediated signaling pathway	gi|291621647|ref|NP_006311.2|/1.98037e-75/membrane-associated progesterone receptor component 2 [Homo sapiens]
gnl|UG|Ssc#S55323806	88	25.34	12	3.43	132	39.67	"Sus scrofa mRNA, clone:AMP010066D04, expressed in alveolar macrophages /gb=AK343855 /gi=288781066 /ug=Ssc.20915 /len=910"	GO:0043231//intracellular membrane-bounded organelle;GO:0005839//proteasome core complex	GO:0004175//endopeptidase activity;GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051707//response to other organism;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|4506181|ref|NP_002778.1|/8.79225e-130/proteasome subunit alpha type-2 [Homo sapiens]
gnl|UG|Ssc#S56448571	6	1.73	0	0	9	2.7	"Sus scrofa unknown protein mRNA, complete cds /cds=p(40,1230) /gb=HM627269 /gi=300827490 /ug=Ssc.24332 /len=3366"	-	-	GO:0048232//male gamete generation	gi|304365442|ref|NP_001182049.1|/0/protein Njmu-R1 [Sus scrofa] 
gnl|UG|Ssc#S58309534	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa WD repeat-containing protein 59-like (LOC100521092), mRNA /cds=p(1,1755) /gb=XM_003126854 /gi=311257011 /ug=Ssc.21904 /len=2329"	-	-	-	gi|311257012|ref|XP_003126902.1|/0/PREDICTED: WD repeat-containing protein 59-like [Sus scrofa]
gnl|UG|Ssc#S35170611	0	0	2	0.57	3	0.9	"Sus scrofa mRNA, clone:LNG010044C11, expressed in lung /gb=AK231904 /gi=115549228 /ug=Ssc.3615 /len=2156"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0044431//Golgi apparatus part	GO:0016859//cis-trans isomerase activity;GO:0004842//ubiquitin-protein ligase activity	GO:0002376//immune system process;GO:0016567//protein ubiquitination;GO:0007599//hemostasis	gi|194043379|ref|XP_001929574.1|/0/PREDICTED: peptidylprolyl isomerase (cyclophilin)-like 2 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S31833144	187	53.84	221	63.17	315	94.67	"Sus scrofa O-linked N-acetylglucosamine transferase (OGT) mRNA, complete cds /cds=p(182,3322) /gb=DQ400859 /gi=89114275 /ug=Ssc.27417 /len=5391"	GO:0035097//histone methyltransferase complex;GO:0044444//cytoplasmic part	GO:0016407//acetyltransferase activity;GO:0008375//acetylglucosaminyltransferase activity;GO:0005529//sugar binding;GO:0030234//enzyme regulator activity	GO:0030162//regulation of proteolysis;GO:0032526//response to retinoic acid;GO:0002763//positive regulation of myeloid leukocyte differentiation;GO:0031062//positive regulation of histone methylation;GO:0023052//signaling;GO:0006486//protein glycosylation;GO:0051260//protein homooligomerization	gi|89886173|ref|NP_001034837.1|/0/UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit [Sus scrofa]
gnl|UG|Ssc#S58304134	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa leucine-rich repeat and transmembrane domain-containing protein 1-like (LOC100155215), mRNA /cds=p(289,1326) /gb=XM_003132263 /gi=311269029 /ug=Ssc.93940 /len=1326"	GO:0031224//intrinsic to membrane	-	-	gi|311269030|ref|XP_003132311.1|/0/PREDICTED: leucine-rich repeat and transmembrane domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S46879924	2	0.58	6	1.72	2	0.6	"PREDICTED: Sus scrofa SET domain, bifurcated 1 (SETDB1), mRNA /cds=p(1,3876) /gb=XM_001929668 /gi=311254364 /ug=Ssc.74960 /len=4579"	GO:0031981//nuclear lumen;GO:0043232;GO:0016020//membrane	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0016279//protein-lysine N-methyltransferase activity	"GO:0001832//blastocyst growth;GO:0006479//protein methylation;GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|311254365|ref|XP_001929703.2|/0/PREDICTED: histone-lysine N-methyltransferase SETDB1 [Sus scrofa]
gnl|UG|Ssc#S55322084	9	2.59	23	6.57	4	1.2	"Sus scrofa mRNA, clone:TCH010086G09, expressed in trachea /gb=AK351060 /gi=288782788 /ug=Ssc.3430 /len=1112"	"GO:0044444//cytoplasmic part;GO:0000784//nuclear chromosome, telomeric region"	GO:0008092//cytoskeletal protein binding	"GO:0006278//RNA-dependent DNA replication;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|194218089|ref|XP_001915009.1|/4.60142e-81/PREDICTED: similar to 182 kDa tankyrase 1-binding protein [Equus caballus]
gnl|UG|Ssc#S58314648	2	0.58	6	1.72	0	0	"PREDICTED: Sus scrofa protein fem-1 homolog B-like (LOC100158096), mRNA /cds=p(1,1884) /gb=XM_003121751 /gi=311245365 /ug=Ssc.34719 /len=2291"	GO:0043231//intracellular membrane-bounded organelle	GO:0032813//tumor necrosis factor receptor superfamily binding;GO:0019787//small conjugating protein ligase activity	GO:0012502//induction of programmed cell death;GO:0006915//apoptosis;GO:0060740//prostate gland epithelium morphogenesis;GO:0002070//epithelial cell maturation;GO:0000077//DNA damage checkpoint;GO:0031396//regulation of protein ubiquitination	gi|149691826|ref|XP_001496275.1|/0/PREDICTED: fem-1 homolog b (C. elegans) [Equus caballus]
gnl|UG|Ssc#S55318761	6	1.73	5	1.43	7	2.1	"Sus scrofa mRNA, clone:MLN010045C01, expressed in mesenteric lymph nodes /gb=AK346731 /gi=288786123 /ug=Ssc.16605 /len=907"	-	-	-	-
gnl|UG|Ssc#S58303175	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa erythroid differentiation-related factor 1-like (LOC100522106), mRNA /cds=p(89,3697) /gb=XM_003133222 /gi=311271998 /ug=Ssc.14348 /len=4371"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0010467//gene expression	gi|311271999|ref|XP_003133270.1|/0/PREDICTED: erythroid differentiation-related factor 1-like [Sus scrofa]
gnl|UG|Ssc#S18548966	2	0.58	7	2	0	0	"BX917617 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0033.p.11 5prim, mRNA sequence /clone=scan0033.p.11 /clone_end=5' /gb=BX917617 /gi=90242419 /ug=Ssc.5048 /len=885"	GO:0043231//intracellular membrane-bounded organelle	GO:0042393//histone binding;GO:0003712//transcription cofactor activity;GO:0043565//sequence-specific DNA binding	"GO:0007166//cell surface receptor linked signaling pathway;GO:0006355//regulation of transcription, DNA-dependent;GO:0008283//cell proliferation;GO:0000082//G1/S transition of mitotic cell cycle;GO:0016573//histone acetylation"	gi|73950404|ref|XP_535306.2|/1.1098e-105/PREDICTED: similar to bromodomain containing 7 [Canis familiaris]
gnl|UG|Ssc#S55326432	37	10.65	25	7.15	39	11.72	"Sus scrofa mRNA, clone:OVRM10097C05, expressed in ovary /gb=AK348219 /gi=288778394 /ug=Ssc.31552 /len=1498"	GO:0031224//intrinsic to membrane	-	GO:0006643//membrane lipid metabolic process	gi|194042606|ref|XP_001926519.1|/1.46419e-147/PREDICTED: protein ARV1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35167456	0	0	0	0	0	0	"Sus scrofa mRNA, clone:AMP010013H01, expressed in alveolar macrophage /gb=AK230592 /gi=115552283 /ug=Ssc.37249 /len=2137"	GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0019904//protein domain specific binding	"GO:0007260//tyrosine phosphorylation of STAT protein;GO:0009719;GO:0030099//myeloid cell differentiation;GO:0006351//transcription, DNA-dependent;GO:0008283//cell proliferation"	gi|311269935|ref|XP_003132696.1|/0/PREDICTED: hematopoietic lineage cell-specific protein-like [Sus scrofa]
gnl|UG|Ssc#S58309365	4	1.15	4	1.14	5	1.5	"PREDICTED: Sus scrofa hypothetical protein LOC100514650 (LOC100514650), mRNA /cds=p(346,1209) /gb=XM_003127037 /gi=311257357 /ug=Ssc.49617 /len=1209"	GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0016247//channel regulator activity;GO:0005272//sodium channel activity	GO:0006814//sodium ion transport;GO:0007267//cell-cell signaling;GO:0006935//chemotaxis;GO:0017085//response to insecticide;GO:0034220//ion transmembrane transport	gi|311257358|ref|XP_003127085.1|/8.15004e-167/PREDICTED: hypothetical protein LOC100514650 [Sus scrofa]
gnl|UG|Ssc#S58309397	182	52.4	368	105.19	104	31.25	"PREDICTED: Sus scrofa cytochrome b-c1 complex subunit Rieske, mitochondrial-like (LOC100522678), mRNA /cds=p(25,849) /gb=XM_003127002 /gi=311257293 /ug=Ssc.1854 /len=1124"	GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0005746//mitochondrial respiratory chain	GO:0043169//cation binding;GO:0015078//hydrogen ion transmembrane transporter activity;GO:0051536//iron-sulfur cluster binding;GO:0016491//oxidoreductase activity;GO:0005515//protein binding	GO:0022900//electron transport chain;GO:0006818//hydrogen transport;GO:0009719;GO:0006811//ion transport;GO:0042221//response to chemical stimulus	"gi|311257294|ref|XP_003127050.1|/5.9979e-145/PREDICTED: cytochrome b-c1 complex subunit Rieske, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58304805	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) (ITGA3), mRNA /cds=p(1,2253) /gb=XM_003131594 /gi=311267584 /ug=Ssc.78753 /len=2253"	GO:0030427//site of polarized growth;GO:0005624//membrane fraction;GO:0008305//integrin complex;GO:0044444//cytoplasmic part	GO:0004871//signal transducer activity;GO:0046983//protein dimerization activity	GO:0007338//single fertilization;GO:0007166//cell surface receptor linked signaling pathway;GO:0007599//hemostasis;GO:0010631//epithelial cell migration;GO:0007611//learning or memory;GO:0010467//gene expression;GO:0010975//regulation of neuron projection development;GO:0010810;GO:0002376//immune system process	gi|311267585|ref|XP_003131642.1|/0/PREDICTED: integrin alpha-3-like [Sus scrofa]
gnl|UG|Ssc#S18382244	5	1.44	17	4.86	7	2.1	"933193 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK462397 /gi=40833678 /ug=Ssc.4207 /len=842"	-	-	-	-
gnl|UG|Ssc#S35169664	58	16.7	28	8	40	12.02	"Sus scrofa mRNA, clone:OVRM10101E07, expressed in ovary /gb=AK235654 /gi=115550175 /ug=Ssc.26094 /len=2260"	-	-	GO:0006955//immune response	gi|115495775|ref|NP_001069721.1|/0/YTH domain family protein 2 [Bos taurus]
gnl|UG|Ssc#S58302699	230	66.22	99	28.3	259	77.84	"PREDICTED: Sus scrofa arf-GAP domain and FG repeats-containing protein 1-like (LOC100514990), mRNA /cds=p(1,1572) /gb=XM_003133701 /gi=311273165 /ug=Ssc.9918 /len=3785"	GO:0005634//nucleus	GO:0003676//nucleic acid binding	GO:0006810//transport;GO:0009987//cellular process;GO:0032502//developmental process;GO:0032501//multicellular organismal process	gi|311273166|ref|XP_003133749.1|/0/PREDICTED: arf-GAP domain and FG repeats-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58311329	17	4.89	41	11.72	4	1.2	"PREDICTED: Sus scrofa aprataxin and PNK-like factor-like (LOC100516073), mRNA /cds=p(1,2160) /gb=XM_003125078 /gi=311252484 /ug=Ssc.10815 /len=2466"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0004527//exonuclease activity;GO:0004519//endonuclease activity;GO:0043169//cation binding;GO:0016835//carbon-oxygen lyase activity	GO:0006281//DNA repair	gi|311252485|ref|XP_003125126.1|/0/PREDICTED: aprataxin and PNK-like factor-like [Sus scrofa]
gnl|UG|Ssc#S48803430	6	1.73	0	0	6	1.8	"Sus scrofa RAD18-like protein (RAD18) mRNA, complete cds /cds=p(80,1588) /gb=FJ236699 /gi=213688826 /ug=Ssc.18120 /len=2267"	GO:0001739//sex chromatin	GO:0000217//DNA secondary structure binding;GO:0046914//transition metal ion binding;GO:0019899//enzyme binding	GO:0009416//response to light stimulus;GO:0033554//cellular response to stress;GO:0000018//regulation of DNA recombination;GO:0048232//male gamete generation	gi|218664473|ref|NP_001136305.1|/0/E3 ubiquitin-protein ligase RAD18 [Sus scrofa]
gnl|UG|Ssc#S55324991	14	4.03	10	2.86	23	6.91	"Sus scrofa mRNA, clone:SKNB10008A04, expressed in skin /gb=AK349617 /gi=288779881 /ug=Ssc.9669 /len=1139"	GO:0030427//site of polarized growth;GO:0000307//cyclin-dependent protein kinase holoenzyme complex;GO:0031981//nuclear lumen;GO:0043005//neuron projection;GO:0031252//cell leading edge;GO:0043232;GO:0044459//plasma membrane part;GO:0045202//synapse;GO:0044444//cytoplasmic part;GO:0044297//cell body	GO:0004674//protein serine/threonine kinase activity;GO:0005102//receptor binding;GO:0032559;GO:0030546//receptor activator activity	GO:0007172//signal complex assembly;GO:0007270//nerve-nerve synaptic transmission;GO:0009057//macromolecule catabolic process;GO:0014037//Schwann cell differentiation;GO:0048167//regulation of synaptic plasticity;GO:0007411//axon guidance;GO:0030534//adult behavior;GO:0051899//membrane depolarization;GO:0043065//positive regulation of apoptosis;GO:0021543//pallium development;GO:0014706//striated muscle tissue development;GO:0016567//protein ubiquitination;GO:0015031//protein transport;GO:0051726//regulation of cell cycle;GO:0021603;GO:0033674//positive regulation of kinase activity;GO:0010469//regulation of receptor activity;GO:0016477//cell migration;GO:0017158//regulation of calcium ion-dependent exocytosis;GO:0007600//sensory perception;GO:0007612//learning;GO:0007599//hemostasis;GO:0042501//serine phosphorylation of STAT protein;GO:0043066//negative regulation of apoptosis;GO:0006897//endocytosis;GO:0031589//cell-substrate adhesion;GO:0021953//central nervous system neuron differentiation;GO:0046823;GO:0007632//visual behavior;GO:0030036//actin cytoskeleton organization;GO:0006950//response to stress;GO:0021549//cerebellum development;GO:0048598//embryonic morphogenesis;GO:0014073;GO:0003407//neural retina development;GO:0048588//developmental cell growth	gi|6680908|ref|NP_031694.1|/4.20975e-170/cyclin-dependent kinase 5 [Mus musculus]
gnl|UG|Ssc#S58304667	60	17.27	19	5.43	59	17.73	"PREDICTED: Sus scrofa 26S proteasome non-ATPase regulatory subunit 11-like (LOC100523278), mRNA /cds=p(1,1302) /gb=XM_003131741 /gi=311267870 /ug=Ssc.908 /len=1644"	GO:0043234//protein complex	GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|311267871|ref|XP_003131789.1|/0/PREDICTED: 26S proteasome non-ATPase regulatory subunit 11-like [Sus scrofa]
gnl|UG|Ssc#S35321847	2	0.58	0	0	6	1.8	"SusFleck_BF_0049_0052_5_pCNS_P06 SusFleck Backfat Sus scrofa cDNA clone 0049_0052_P06 5', mRNA sequence /clone=0049_0052_P06 /clone_end=5' /gb=DT320239 /gi=116335432 /ug=Ssc.32545 /len=831"	-	-	-	gi|301754763|ref|XP_002913286.1|/9.85232e-21/PREDICTED: hypothetical protein LOC100467971 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35171316	31	8.93	22	6.29	15	4.51	"Sus scrofa mRNA, clone:OVRM10053A01, expressed in ovary /gb=AK235140 /gi=115548523 /ug=Ssc.55526 /len=2032"	-	-	-	gi|297272896|ref|XP_002800506.1|/1.95978e-15/PREDICTED: protein CASC3 isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S58302829	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa DNA-binding protein SATB2-like (LOC100521691), mRNA /cds=p(1,537) /gb=XM_003133567 /gi=311272853 /ug=Ssc.79662 /len=603"	-	-	-	-
gnl|UG|Ssc#S43509643	117	33.68	179	51.17	102	30.65	"Sus scrofa general transcription factor IIH, polypeptide 4, 52kDa (GTF2H4), mRNA /cds=p(1,1392) /gb=NM_001123120 /gi=178056953 /ug=Ssc.7512 /len=1392"	GO:0005667//transcription factor complex	"GO:0030528//transcription regulator activity;GO:0005488//binding;GO:0004674//protein serine/threonine kinase activity;GO:0042623//ATPase activity, coupled;GO:0001071//nucleic acid binding transcription factor activity"	"GO:0006289//nucleotide-excision repair;GO:0006352//transcription initiation, DNA-dependent;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|178056954|ref|NP_001116592.1|/0/general transcription factor IIH subunit 4 [Sus scrofa]
gnl|UG|Ssc#S22427324	0	0	6	1.72	0	0	"Sus scrofa glucocorticoid receptor alpha mRNA, complete cds /cds=p(384,2732) /gb=AY779185 /gi=55824363 /ug=Ssc.15952 /len=3269"	-	-	-	-
gnl|UG|Ssc#S58302134	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa MACRO domain-containing protein 2-like (LOC100520869), mRNA /cds=p(229,855) /gb=XM_003134262 /gi=311274395 /ug=Ssc.93159 /len=855"	-	-	-	gi|311274396|ref|XP_003134310.1|/4.38351e-104/PREDICTED: MACRO domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S46881256	8	2.3	2	0.57	0	0	"PREDICTED: Sus scrofa nucleoporin 43kDa (NUP43), mRNA /cds=p(242,1384) /gb=XM_001928969 /gi=311243798 /ug=Ssc.52499 /len=2657"	GO:0005643//nuclear pore;GO:0000776//kinetochore;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0044238//primary metabolic process;GO:0050658//RNA transport;GO:0015758//glucose transport;GO:0007067//mitosis	gi|194033461|ref|XP_001929004.1|/0/PREDICTED: nucleoporin Nup43 [Sus scrofa]
gnl|UG|Ssc#S46876017	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa attractin (ATRN), mRNA /cds=p(1,4251) /gb=XM_001927289 /gi=311274539 /ug=Ssc.57572 /len=4959"	GO:0044421//extracellular region part;GO:0016021//integral to membrane;GO:0044424//intracellular part	GO:0004871//signal transducer activity;GO:0030246//carbohydrate binding	GO:0035264//multicellular organism growth;GO:0006952//defense response	gi|311274540|ref|XP_001927324.2|/0/PREDICTED: attractin [Sus scrofa]
gnl|UG|Ssc#S20938872	3769	1085.11	2420	691.75	5471	1644.18	"AJ650595 CSEQRAN19 Sus scrofa cDNA clone C0003275_M17, mRNA sequence /clone=C0003275_M17 /gb=AJ650595 /gi=49327440 /ug=Ssc.85660 /len=423"	GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0042254//ribosome biogenesis	gi|118097327|ref|XP_001231438.1|/4.66435e-65/PREDICTED: similar to ribosomal protein L26 isoform 1 [Gallus gallus]
gnl|UG|Ssc#S58315255	127	36.56	127	36.3	231	69.42	"PREDICTED: Sus scrofa protein-L-isoaspartate(D-aspartate) O-methyltransferase-like (LOC100518280), mRNA /cds=p(58,741) /gb=XM_003121146 /gi=311243796 /ug=Ssc.50288 /len=1581"	GO:0043231//intracellular membrane-bounded organelle	GO:0008757//S-adenosylmethionine-dependent methyltransferase activity;GO:0005515//protein binding	GO:0006790//sulfur compound metabolic process;GO:0008213;GO:0006730//one-carbon metabolic process;GO:0006575//cellular modified amino acid metabolic process	gi|73945676|ref|XP_850565.1|/1.53472e-134/PREDICTED: similar to Protein-L-isoaspartate(D-aspartate) O-methyltransferase (Protein-beta-aspartate methyltransferase) (PIMT) (Protein L-isoaspartyl/D-aspartyl methyltransferase) (L-isoaspartyl protein carboxyl methyltransferase) isoform 6 [Canis familiaris]
gnl|UG|Ssc#S58312503	15	4.32	5	1.43	2	0.6	"PREDICTED: Sus scrofa fibrillin 2 (FBN2), mRNA /cds=p(1,8406) /gb=XM_003123897 /gi=311250074 /ug=Ssc.27703 /len=9956"	GO:0043205//fibril	GO:0046872//metal ion binding;GO:0005198//structural molecule activity	GO:0030512//negative regulation of transforming growth factor beta receptor signaling pathway;GO:0045597//positive regulation of cell differentiation;GO:0060343;GO:0030282//bone mineralization;GO:0035108//limb morphogenesis	gi|311250075|ref|XP_003123945.1|/0/PREDICTED: fibrillin-1 [Sus scrofa]
gnl|UG|Ssc#S58313845	0	0	0	0	0	0	"PREDICTED: Sus scrofa protein fat-free homolog (LOC100518951), mRNA /cds=p(1,2445) /gb=XM_003122565 /gi=311247346 /ug=Ssc.19838 /len=2569"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0006810//transport;GO:0010876	gi|311247347|ref|XP_003122613.1|/0/PREDICTED: protein fat-free homolog [Sus scrofa]
gnl|UG|Ssc#S29469952	65	18.71	9	2.57	41	12.32	"Sus scrofa transcription enhancer factor 5 mRNA, complete cds /cds=p(1,1308) /gb=DQ132880 /gi=73745271 /ug=Ssc.29240 /len=1308"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0035556//intracellular signal transduction;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0022414//reproductive process	gi|83816985|ref|NP_001033055.1|/0/transcription enhancer factor 5 [Sus scrofa]
gnl|UG|Ssc#S58306065	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa ras GTPase-activating protein nGAP-like (LOC100522392), mRNA /cds=p(154,3996) /gb=XM_003130333 /gi=311264879 /ug=Ssc.12938 /len=4779"	GO:0044464//cell part	-	GO:0009966//regulation of signal transduction	gi|311264880|ref|XP_003130381.1|/0/PREDICTED: ras GTPase-activating protein nGAP-like [Sus scrofa]
gnl|UG|Ssc#S35164033	21	6.05	10	2.86	10	3.01	"Sus scrofa mRNA, clone:SPL010024D05, expressed in spleen /gb=AK237326 /gi=115555693 /ug=Ssc.16580 /len=1239"	-	-	-	-
gnl|UG|Ssc#S35173193	18	5.18	5	1.43	9	2.7	"Sus scrofa mRNA, clone:OVR010069D05, expressed in ovary /gb=AK234480 /gi=115546642 /ug=Ssc.50055 /len=1690"	-	-	-	gi|292630325|ref|XP_002667834.1|/1.57957e-14/PREDICTED: superkiller viralicidic activity 2-like [Danio rerio]
gnl|UG|Ssc#S55320006	4	1.15	0	0	2	0.6	"Sus scrofa mRNA, clone:LVRM10039E02, expressed in liver /gb=AK346084 /gi=288784874 /ug=Ssc.5949 /len=2248"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|126335210|ref|XP_001363798.1|/6.78381e-174/PREDICTED: similar to Clusterin associated protein 1 [Monodelphis domestica]
gnl|UG|Ssc#S58303118	0	0	0	0	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100512563 (LOC100512563), mRNA /cds=p(1,2211) /gb=XM_003133278 /gi=311272156 /ug=Ssc.78721 /len=2211"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0008375//acetylglucosaminyltransferase activity	GO:0006487//protein N-linked glycosylation	gi|311272157|ref|XP_003133326.1|/0/PREDICTED: hypothetical protein LOC100512563 [Sus scrofa]
gnl|UG|Ssc#S46879156	367	105.66	237	67.75	426	128.02	"PREDICTED: Sus scrofa COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis), transcript variant 1 (COPS7A), mRNA /cds=p(185,1012) /gb=XM_001925621 /gi=311256274 /ug=Ssc.21875 /len=1838"	GO:0043234//protein complex;GO:0031981//nuclear lumen	-	-	gi|7705330|ref|NP_057403.1|/7.05148e-134/COP9 signalosome complex subunit 7a [Homo sapiens]
gnl|UG|Ssc#S58303441	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa activating signal cointegrator 1 complex subunit 2-like (LOC100514543), partial mRNA /cds=p(1,2151) /gb=XM_003132979 /gi=311270887 /ug=Ssc.72315 /len=2230"	-	-	-	"gi|311270888|ref|XP_003133027.1|/0/PREDICTED: activating signal cointegrator 1 complex subunit 2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58311268	7	2.02	0	0	2	0.6	"PREDICTED: Sus scrofa translation initiation factor IF-2, mitochondrial-like (LOC100513534), mRNA /cds=p(261,2444) /gb=XM_003125130 /gi=311252608 /ug=Ssc.22842 /len=2709"	GO:0043231//intracellular membrane-bounded organelle	"GO:0017111//nucleoside-triphosphatase activity;GO:0043021//ribonucleoprotein binding;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561"	GO:0006413//translational initiation;GO:0009207	"gi|311252609|ref|XP_003125178.1|/0/PREDICTED: translation initiation factor IF-2, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35168274	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10151H07, expressed in ovary /gb=AK236094 /gi=115551416 /ug=Ssc.17653 /len=999"	GO:0030529//ribonucleoprotein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0003824//catalytic activity	-	"gi|311245647|ref|XP_003121908.1|/1.91393e-152/PREDICTED: 39S ribosomal protein L46, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35166648	27	7.77	8	2.29	17	5.11	"Sus scrofa mRNA, clone:THY010123D04, expressed in thymus /gb=AK239677 /gi=115553091 /ug=Ssc.9374 /len=2003"	GO:0043234//protein complex;GO:0000407//pre-autophagosomal structure;GO:0005773//vacuole	GO:0035091//phosphatidylinositol binding	GO:0016236//macroautophagy;GO:0007033//vacuole organization	gi|298231147|ref|NP_001177224.1|/0/WD repeat domain phosphoinositide-interacting protein 2 [Sus scrofa]
gnl|UG|Ssc#S23213113	12	3.45	0	0	16	4.81	"Sus scrofa clone Clu_3876.scr.msk.p1.Contig1, mRNA sequence /gb=AY609895 /gi=52351465 /ug=Ssc.8693 /len=1628"	GO:0031224//intrinsic to membrane	GO:0048037//cofactor binding;GO:0003824//catalytic activity	-	gi|301774264|ref|XP_002922535.1|/2.38087e-130/PREDICTED: uncharacterized protein C1orf43 homolog [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46877596	2	0.58	0	0	5	1.5	"PREDICTED: Sus scrofa centrosomal protein 63 (LOC100157714), mRNA /cds=p(1,1614) /gb=XM_001925188 /gi=311269423 /ug=Ssc.30518 /len=1953"	GO:0005815//microtubule organizing center;GO:0005819//spindle	GO:0005488//binding	GO:0035556//intracellular signal transduction;GO:0000087//M phase of mitotic cell cycle;GO:0007051//spindle organization;GO:0006974//response to DNA damage stimulus	gi|311269424|ref|XP_001925223.2|/0/PREDICTED: centrosomal protein of 63 kDa [Sus scrofa]
gnl|UG|Ssc#S58300844	4	1.15	0	0	4	1.2	"Sus scrofa extracellular signal-regulated kinase-2 (ERK2), mRNA /cds=p(175,1254) /gb=NM_001198922 /gi=312062794 /ug=Ssc.72142 /len=1888"	GO:0005856//cytoskeleton;GO:0031981//nuclear lumen;GO:0032991//macromolecular complex;GO:0030424//axon;GO:0000267//cell fraction;GO:0030425//dendrite;GO:0044444//cytoplasmic part;GO:0043025//neuronal cell body	GO:0032559;GO:0045309//protein phosphorylated amino acid binding;GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0003676//nucleic acid binding;GO:0019901//protein kinase binding	"GO:0001775//cell activation;GO:0006206//pyrimidine base metabolic process;GO:0050673//epithelial cell proliferation;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0050851//antigen receptor-mediated signaling pathway;GO:0043331//response to dsRNA;GO:0009653//anatomical structure morphogenesis;GO:0016477//cell migration;GO:0007600//sensory perception;GO:0012502//induction of programmed cell death;GO:0006935//chemotaxis;GO:0007599//hemostasis;GO:0045595//regulation of cell differentiation;GO:0007264//small GTPase mediated signal transduction;GO:0002237//response to molecule of bacterial origin;GO:0048545//response to steroid hormone stimulus;GO:0007267//cell-cell signaling;GO:0033554//cellular response to stress;GO:0002224//toll-like receptor signaling pathway;GO:0000187//activation of MAPK activity;GO:0006412//translation;GO:0048568//embryonic organ development;GO:0006355//regulation of transcription, DNA-dependent"	gi|312062795|ref|NP_001185851.1|/0/extracellular signal-regulated kinase-2 [Sus scrofa]
gnl|UG|Ssc#S58308356	8	2.3	2	0.57	3	0.9	"PREDICTED: Sus scrofa methylmalonic aciduria and homocystinuria type C protein homolog (LOC100513159), mRNA /cds=p(9,851) /gb=XM_003128043 /gi=311259417 /ug=Ssc.29045 /len=1462"	GO:0043231//intracellular membrane-bounded organelle	GO:0019842//vitamin binding	-	gi|311259418|ref|XP_003128091.1|/2.19391e-156/PREDICTED: methylmalonic aciduria and homocystinuria type C protein homolog [Sus scrofa]
gnl|UG|Ssc#S58303189	16	4.61	2	0.57	15	4.51	"PREDICTED: Sus scrofa sterile alpha motif domain containing 4B (SAMD4B), mRNA /cds=p(199,2286) /gb=XM_003133211 /gi=311271950 /ug=Ssc.37688 /len=3498"	-	GO:0005488//binding	-	gi|311271951|ref|XP_003133259.1|/0/PREDICTED: protein Smaug homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S58304867	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa oxysterol-binding protein-related protein 7-like (LOC100520586), mRNA /cds=p(1,639) /gb=XM_003131539 /gi=311267453 /ug=Ssc.28214 /len=1040"	-	GO:0005488//binding	GO:0051234//establishment of localization;GO:0010876	gi|311267454|ref|XP_003131587.1|/7.55459e-107/PREDICTED: oxysterol-binding protein-related protein 7-like [Sus scrofa]
gnl|UG|Ssc#S58312888	4	1.15	8	2.29	2	0.6	"PREDICTED: Sus scrofa phosphatidylinositol 3-kinase regulatory subunit beta-like (LOC100519762), mRNA /cds=p(431,2599) /gb=XM_003123506 /gi=311249287 /ug=Ssc.21795 /len=3560"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0005488//binding;GO:0019207//kinase regulator activity;GO:0035004//phosphatidylinositol 3-kinase activity	GO:0019222//regulation of metabolic process;GO:0048017//inositol lipid-mediated signaling;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006916//anti-apoptosis;GO:0050851//antigen receptor-mediated signaling pathway;GO:0009966//regulation of signal transduction;GO:0007599//hemostasis;GO:0016310//phosphorylation;GO:0031294	gi|311249288|ref|XP_003123554.1|/0/PREDICTED: phosphatidylinositol 3-kinase regulatory subunit beta-like [Sus scrofa]
gnl|UG|Ssc#S58311717	7	2.02	12	3.43	21	6.31	"PREDICTED: Sus scrofa putative RNA-binding protein Luc7-like 1-like, transcript variant 2 (LOC100521784), mRNA /cds=p(1,1122) /gb=XM_003124681 /gi=311251686 /ug=Ssc.21151 /len=1321"	GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0019904//protein domain specific binding	GO:0016202//regulation of striated muscle tissue development	gi|311251687|ref|XP_003124729.1|/2.52708e-132/PREDICTED: putative RNA-binding protein Luc7-like 1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S14902333	0	0	0	0	2	0.6	"Sus scrofa unknown mRNA /cds=p(410,1582) /gb=AY246700 /gi=29165461 /ug=Ssc.909 /len=3516"	GO:0044459//plasma membrane part	GO:0008092//cytoskeletal protein binding	GO:0007010//cytoskeleton organization	gi|149730687|ref|XP_001497061.1|/0/PREDICTED: xin actin-binding repeat containing 2 isoform 1 [Equus caballus]
gnl|UG|Ssc#S58309983	0	0	0	0	0	0	"PREDICTED: Sus scrofa serine/threonine kinase 38 like (STK38L), mRNA /cds=p(155,1627) /gb=XM_003126421 /gi=311256010 /ug=Ssc.90435 /len=1627"	GO:0005856//cytoskeleton	GO:0046872//metal ion binding;GO:0008092//cytoskeletal protein binding;GO:0004672//protein kinase activity;GO:0032559	GO:0035556//intracellular signal transduction;GO:0006464//protein modification process;GO:0006796//phosphate metabolic process	gi|311256011|ref|XP_003126469.1|/0/PREDICTED: serine/threonine-protein kinase 38-like [Sus scrofa]
gnl|UG|Ssc#S58309256	23	6.62	8	2.29	11	3.31	"PREDICTED: Sus scrofa egl nine homolog 2 (C. elegans) (EGLN2), mRNA /cds=p(540,1748) /gb=XM_003127145 /gi=311257577 /ug=Ssc.31705 /len=2337"	GO:0043231//intracellular membrane-bounded organelle	"GO:0019842//vitamin binding;GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0019825//oxygen binding;GO:0005506//iron ion binding"	GO:0016049//cell growth;GO:0009896;GO:0030518//steroid hormone receptor signaling pathway;GO:0019725//cellular homeostasis;GO:0006950//response to stress	gi|311257578|ref|XP_003127193.1|/0/PREDICTED: egl nine homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S58302888	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa RNA binding motif protein 45 (RBM45), mRNA /cds=p(124,1548) /gb=XM_003133507 /gi=311272710 /ug=Ssc.42455 /len=1840"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0048731;GO:0048869	gi|311272711|ref|XP_003133555.1|/0/PREDICTED: RNA-binding protein 45-like [Sus scrofa]
gnl|UG|Ssc#S23213558	5	1.44	0	0	5	1.5	"Sus scrofa clone Clu_10913.scr.msk.p1.Contig2, mRNA sequence /gb=AY609419 /gi=52350704 /ug=Ssc.4858 /len=2497"	GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part	GO:0051536//iron-sulfur cluster binding;GO:0005506//iron ion binding;GO:0016829//lyase activity;GO:0003729//mRNA binding	GO:0016125//sterol metabolic process;GO:0034377;GO:0055080//cation homeostasis;GO:0009411//response to UV;GO:0001932//regulation of protein phosphorylation;GO:0030099//myeloid cell differentiation;GO:0006725//cellular aromatic compound metabolic process;GO:0006779//porphyrin biosynthetic process	"gi|281427372|ref|NP_001163994.1|/0/ferrochelatase, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S31120805	0	0	5	1.43	0	0	"1543475 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY424643 /gi=87225946 /ug=Ssc.40646 /len=656"	GO:0031012//extracellular matrix	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding	GO:0008544//epidermis development;GO:0032963//collagen metabolic process;GO:0006508//proteolysis;GO:0048232//male gamete generation;GO:0030198//extracellular matrix organization;GO:0030323//respiratory tube development	"gi|119574200|gb|EAW53815.1|/8.85115e-30/ADAM metallopeptidase with thrombospondin type 1 motif, 2, isoform CRA_a [Homo sapiens]"
gnl|UG|Ssc#S46879154	124	35.7	195	55.74	87	26.15	"PREDICTED: Sus scrofa hypothetical protein LOC100152888 (LOC100152888), mRNA /cds=p(1,1305) /gb=XM_001928067 /gi=311256265 /ug=Ssc.17520 /len=1797"	-	-	-	gi|311256266|ref|XP_001928102.2|/7.70798e-77/PREDICTED: hypothetical protein LOC100152888 [Sus scrofa]
gnl|UG|Ssc#S58310046	33	9.5	55	15.72	30	9.02	"PREDICTED: Sus scrofa inner nuclear membrane protein Man1-like (LOC100511508), mRNA /cds=p(1,2736) /gb=XM_003126352 /gi=311255864 /ug=Ssc.14687 /len=4776"	-	-	-	gi|311255865|ref|XP_003126400.1|/0/PREDICTED: inner nuclear membrane protein Man1-like [Sus scrofa]
gnl|UG|Ssc#S58310141	14	4.03	10	2.86	3	0.9	"PREDICTED: Sus scrofa transmembrane protein 198-like (LOC100523964), mRNA /cds=p(221,1270) /gb=XM_003126280 /gi=311255634 /ug=Ssc.63880 /len=1270"	-	-	-	gi|311255635|ref|XP_003126328.1|/5.89452e-123/PREDICTED: transmembrane protein 198-like [Sus scrofa]
gnl|UG|Ssc#S35169102	104	29.94	100	28.58	67	20.14	"Sus scrofa mRNA, clone:OVRM10117G08, expressed in ovary /gb=AK235811 /gi=115550737 /ug=Ssc.4402 /len=1976"	-	-	-	-
gnl|UG|Ssc#S58309050	33	9.5	8	2.29	28	8.41	"PREDICTED: Sus scrofa adaptor-related protein complex 2, alpha 1 subunit, transcript variant 1 (AP2A1), mRNA /cds=p(1,2937) /gb=XM_003127338 /gi=311257999 /ug=Ssc.45388 /len=3191"	GO:0030119//AP-type membrane coat adaptor complex;GO:0012510//trans-Golgi network transport vesicle membrane;GO:0030128//clathrin coat of endocytic vesicle;GO:0044459//plasma membrane part	GO:0005515//protein binding;GO:0022892	GO:0007267//cell-cell signaling;GO:0015031//protein transport;GO:0007173//epidermal growth factor receptor signaling pathway;GO:0050688//regulation of defense response to virus;GO:0006935//chemotaxis;GO:0006892//post-Golgi vesicle-mediated transport	gi|311258000|ref|XP_003127386.1|/0/PREDICTED: AP-2 complex subunit alpha-1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55326054	18	5.18	3	0.86	12	3.61	"Sus scrofa mRNA, clone:OVRM10211E07, expressed in ovary /gb=AK348597 /gi=288778772 /ug=Ssc.1616 /len=1795"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0032501//multicellular organismal process	gi|74007620|ref|XP_857691.1|/0/PREDICTED: similar to Zinc finger protein 261 (DXS6673E protein) isoform 7 [Canis familiaris]
gnl|UG|Ssc#S46876087	0	0	2	0.57	7	2.1	"PREDICTED: Sus scrofa tRNA methyltransferase 6 homolog (S. cerevisiae) (TRMT6), mRNA /cds=p(167,1660) /gb=XM_001927396 /gi=311274336 /ug=Ssc.17276 /len=2641"	-	-	-	-
gnl|UG|Ssc#S35171616	28	8.06	5	1.43	26	7.81	"Sus scrofa mRNA, clone:ITT010086H04, expressed in intestine /gb=AK231529 /gi=115548219 /ug=Ssc.5924 /len=1692"	GO:0031981//nuclear lumen;GO:0032991//macromolecular complex;GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0032559;GO:0045309//protein phosphorylated amino acid binding;GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0019899//enzyme binding	"GO:0001775//cell activation;GO:0009888//tissue development;GO:0009612//response to mechanical stimulus;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006464//protein modification process;GO:0043331//response to dsRNA;GO:0009653//anatomical structure morphogenesis;GO:0007600//sensory perception;GO:0006935//chemotaxis;GO:0006796//phosphate metabolic process;GO:0007599//hemostasis;GO:0007264//small GTPase mediated signal transduction;GO:0002237//response to molecule of bacterial origin;GO:0033554//cellular response to stress;GO:0002224//toll-like receptor signaling pathway;GO:0065003;GO:0006412//translation;GO:0000165//MAPKKK cascade;GO:0000038//very long-chain fatty acid metabolic process;GO:0006352//transcription initiation, DNA-dependent;GO:0006355//regulation of transcription, DNA-dependent"	gi|74199274|dbj|BAE33167.1|/0/unnamed protein product [Mus musculus]
gnl|UG|Ssc#S35170447	1049	302.01	617	176.37	313	94.06	"Sus scrofa mRNA, clone:OVRM10078F11, expressed in ovary /gb=AK235414 /gi=115549392 /ug=Ssc.43064 /len=1686"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0030528//transcription regulator activity;GO:0003723//RNA binding;GO:0043565//sequence-specific DNA binding	"GO:0000377;GO:0000956//nuclear-transcribed mRNA catabolic process;GO:0043488//regulation of mRNA stability;GO:0051169//nuclear transport;GO:0006351//transcription, DNA-dependent"	gi|116256516|ref|NP_001070735.1|/2.26602e-99/heterogeneous nuclear ribonucleoprotein D0 isoform d [Mus musculus]
gnl|UG|Ssc#S35165726	43	12.38	22	6.29	55	16.53	"Sus scrofa mRNA, clone:LVRM10102F08, expressed in liver /gb=AK233209 /gi=115554000 /ug=Ssc.55159 /len=1450"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0016411//acylglycerol O-acyltransferase activity	GO:0006644//phospholipid metabolic process	gi|219521968|ref|NP_001137172.1|/0/1-acyl-sn-glycerol-3-phosphate acyltransferase gamma [Sus scrofa]
gnl|UG|Ssc#S55325529	2	0.58	8	2.29	2	0.6	"Sus scrofa mRNA, clone:PTG010002F11, expressed in pituitary gland /gb=AK349122 /gi=288779297 /ug=Ssc.7258 /len=2848"	GO:0044432//endoplasmic reticulum part	"GO:0019842//vitamin binding;GO:0046914//transition metal ion binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0019798"	GO:0019471;GO:0030198//extracellular matrix organization	gi|151556370|gb|AAI47868.1|/0/P4HA1 protein [Bos taurus]
gnl|UG|Ssc#S42609558	3	0.86	0	0	5	1.5	"Sus scrofa IkB kinase-a (IKK-alpha) mRNA, complete cds /cds=p(1,2235) /gb=EU399820 /gi=166079192 /ug=Ssc.21683 /len=2235"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0042598//vesicular fraction;GO:0005887//integral to plasma membrane;GO:0044444//cytoplasmic part	GO:0046983//protein dimerization activity;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0007265//Ras protein signal transduction;GO:0048017//inositol lipid-mediated signaling;GO:0007589//body fluid secretion;GO:0002573//myeloid leukocyte differentiation;GO:0050673//epithelial cell proliferation;GO:0042476//odontogenesis;GO:0050851//antigen receptor-mediated signaling pathway;GO:0051091//positive regulation of transcription factor activity;GO:0002224//toll-like receptor signaling pathway;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0002009//morphogenesis of an epithelium;GO:0006468//protein phosphorylation;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0042692//muscle cell differentiation;GO:0002237//response to molecule of bacterial origin	gi|166796051|ref|NP_001107751.1|/0/inhibitor of nuclear factor kappa-B kinase subunit alpha [Sus scrofa]
gnl|UG|Ssc#S58313443	12	3.45	21	6	4	1.2	"PREDICTED: Sus scrofa pleckstrin homology domain-containing family A member 7-like (LOC100514820), mRNA /cds=p(1,4350) /gb=XM_003122959 /gi=311248162 /ug=Ssc.35155 /len=5715"	GO:0005815//microtubule organizing center;GO:0005913//cell-cell adherens junction	GO:0005515//protein binding	GO:0016337//cell-cell adhesion;GO:0045217//cell-cell junction maintenance	gi|311248163|ref|XP_003123007.1|/0/PREDICTED: pleckstrin homology domain-containing family A member 7-like [Sus scrofa]
gnl|UG|Ssc#S58311114	7	2.02	0	0	3	0.9	"PREDICTED: Sus scrofa GPN-loop GTPase 1-like (LOC100521316), partial mRNA /cds=p(1,1170) /gb=XM_003125289 /gi=311252923 /ug=Ssc.11628 /len=2424"	GO:0044424//intracellular part	GO:0032561;GO:0016462//pyrophosphatase activity;GO:0032559	-	"gi|311252924|ref|XP_003125337.1|/0/PREDICTED: GPN-loop GTPase 1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S26727913	12	3.45	2	0.57	2	0.6	"AJ963997 KN404_2 Sus scrofa cDNA clone C0007751j11 3', mRNA sequence /clone=C0007751j11 /clone_end=3' /gb=AJ963997 /gi=74380813 /ug=Ssc.46586 /len=731"	-	-	-	-
gnl|UG|Ssc#S55322809	52	14.97	18	5.15	27	8.11	"Sus scrofa mRNA, clone:TCH010020A05, expressed in trachea /gb=AK350734 /gi=288782063 /ug=Ssc.55793 /len=1996"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0005515//protein binding	"GO:0006351//transcription, DNA-dependent"	gi|311255630|ref|XP_003126304.1|/1.07306e-58/PREDICTED: SAP domain-containing ribonucleoprotein-like [Sus scrofa]
gnl|UG|Ssc#S55320207	0	0	0	0	0	0	"Sus scrofa mRNA, clone:THY010075E12, expressed in thymus /gb=AK351756 /gi=288784665 /ug=Ssc.16682 /len=2345"	-	-	-	-
gnl|UG|Ssc#S58310565	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa tripartite motif-containing 33, transcript variant 1 (TRIM33), mRNA /cds=p(112,3495) /gb=XM_003125835 /gi=311254542 /ug=Ssc.37319 /len=3654"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0046332//SMAD binding;GO:0003824//catalytic activity	"GO:0032446//protein modification by small protein conjugation;GO:0030509//BMP signaling pathway;GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0006351//transcription, DNA-dependent"	gi|311254543|ref|XP_003125883.1|/0/PREDICTED: e3 ubiquitin-protein ligase TRIM33-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S26732741	20	5.76	5	1.43	5	1.5	"AJ943723 CSEQRAN17 Sus scrofa cDNA clone C0007316f07 5', mRNA sequence /clone=C0007316f07 /clone_end=5' /gb=AJ943723 /gi=74360465 /ug=Ssc.8607 /len=841"	GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0031461//cullin-RING ubiquitin ligase complex;GO:0044444//cytoplasmic part	"GO:0008528//peptide receptor activity, G-protein coupled;GO:0019899//enzyme binding;GO:0005261//cation channel activity;GO:0019787//small conjugating protein ligase activity"	GO:0006917//induction of apoptosis;GO:0022402//cell cycle process;GO:0051704;GO:0019941//modification-dependent protein catabolic process;GO:0006874//cellular calcium ion homeostasis;GO:0006816//calcium ion transport;GO:0008283//cell proliferation;GO:0006950//response to stress	gi|301787581|ref|XP_002929206.1|/4.15302e-99/PREDICTED: LOW QUALITY PROTEIN: cullin-5-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S19537267	82	23.61	245	70.03	41	12.32	"940548 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN153435 /gi=46167865 /ug=Ssc.56822 /len=742"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0030528//transcription regulator activity;GO:0042802//identical protein binding;GO:0016614//oxidoreductase activity, acting on CH-OH group of donors;GO:0001071//nucleic acid binding transcription factor activity;GO:0000166//nucleotide binding"	GO:0006996//organelle organization;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0045444//fat cell differentiation	gi|149640608|ref|XP_001510652.1|/2.63898e-32/PREDICTED: similar to C-terminal binding protein 1 [Ornithorhynchus anatinus]
gnl|UG|Ssc#S35166173	0	0	0	0	7	2.1	"Sus scrofa mRNA, clone:THY010202D11, expressed in thymus /gb=AK239752 /gi=115553565 /ug=Ssc.31026 /len=3552"	-	-	-	gi|311274710|ref|XP_003134442.1|/2.16436e-31/PREDICTED: transmembrane 9 superfamily member 4-like [Sus scrofa]
gnl|UG|Ssc#S55326119	3	0.86	3	0.86	0	0	"Sus scrofa mRNA, clone:OVRM10193G01, expressed in ovary /gb=AK348532 /gi=288778707 /ug=Ssc.84446 /len=1700"	-	GO:0046872//metal ion binding	-	gi|73987604|ref|XP_542219.2|/7.29336e-123/PREDICTED: similar to ring finger protein 126 isoform 2 [Canis familiaris]
gnl|UG|Ssc#S58305594	10	2.88	12	3.43	4	1.2	"PREDICTED: Sus scrofa cyclin-Y-like (LOC100525480), mRNA /cds=p(1,1302) /gb=XM_003130801 /gi=311265845 /ug=Ssc.2665 /len=4379"	GO:0043231//intracellular membrane-bounded organelle;GO:0000307//cyclin-dependent protein kinase holoenzyme complex;GO:0016020//membrane	GO:0005488//binding;GO:0019887//protein kinase regulator activity	GO:0022402//cell cycle process;GO:0030111//regulation of Wnt receptor signaling pathway;GO:0000079//regulation of cyclin-dependent protein kinase activity	gi|311265846|ref|XP_003130849.1|/0/PREDICTED: cyclin-Y-like [Sus scrofa]
gnl|UG|Ssc#S34535468	28	8.06	11	3.14	13	3.91	"Sus scrofa mRNA for N-acetylglucosaminyltransferase I, complete cds /cds=p(51,1394) /gb=AB251342 /gi=112821181 /ug=Ssc.20755 /len=2486"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0008375//acetylglucosaminyltransferase activity	GO:0006486//protein glycosylation	gi|118403868|ref|NP_001072136.1|/0/N-acetylglucosaminyltransferase I [Sus scrofa]
gnl|UG|Ssc#S35172388	4	1.15	0	0	5	1.5	"Sus scrofa mRNA, clone:SPL010103D01, expressed in spleen /gb=AK237829 /gi=115547447 /ug=Ssc.79672 /len=2406"	-	-	-	-
gnl|UG|Ssc#S35167199	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10201E04, expressed in ovary /gb=AK236545 /gi=115552540 /ug=Ssc.80830 /len=1808"	GO:0044424//intracellular part	GO:0003824//catalytic activity	-	gi|297291231|ref|XP_002808438.1|/0/PREDICTED: LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2C-binding protein-like [Macaca mulatta]
gnl|UG|Ssc#S50210886	4	1.15	4	1.14	7	2.1	"susfleck_AF_N_8_F09 SUSFLECK Abdominal Fat Normalized Sus scrofa cDNA clone 8_F09, mRNA sequence /clone=8_F09 /gb=FD642722 /gi=221007295 /ug=Ssc.79981 /len=800"	-	-	-	gi|296489122|gb|DAA31235.1|/2.85558e-139/transmembrane protein 48 [Bos taurus]
gnl|UG|Ssc#S20116352	55	15.83	6	1.72	20	6.01	"Sus scrofa matrix metallopeptidase 14 (membrane-inserted) (MMP14), mRNA /cds=p(1,1743) /gb=NM_214239 /gi=47523559 /ug=Ssc.734 /len=3284"	GO:0016021//integral to membrane;GO:0048770;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005102//receptor binding;GO:0008047//enzyme activator activity;GO:0001071//nucleic acid binding transcription factor activity	GO:0009605//response to external stimulus;GO:0051605//protein maturation by peptide bond cleavage;GO:0050673//epithelial cell proliferation;GO:0022602//ovulation cycle process;GO:0048545//response to steroid hormone stimulus;GO:0001763//morphogenesis of a branching structure;GO:0001953//negative regulation of cell-matrix adhesion;GO:0008347//glial cell migration;GO:0051345//positive regulation of hydrolase activity;GO:0030323//respiratory tube development;GO:0006950//response to stress;GO:0048646//anatomical structure formation involved in morphogenesis	gi|47523560|ref|NP_999404.1|/0/matrix metalloproteinase-14 precursor [Sus scrofa]
gnl|UG|Ssc#S31134478	2	0.58	7	2	4	1.2	"858071 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY438316 /gi=87239619 /ug=Ssc.57790 /len=316"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|114626854|ref|XP_528436.2|/3.95439e-39/PREDICTED: similar to 60S ribosomal protein L12 [Pan troglodytes]
gnl|UG|Ssc#S58307650	5	1.44	0	0	12	3.61	"PREDICTED: Sus scrofa kinesin light chain 1-like (LOC100523621), mRNA /cds=p(259,1941) /gb=XM_003128755 /gi=311261634 /ug=Ssc.2936 /len=2408"	-	-	-	gi|311261635|ref|XP_003128803.1|/0/PREDICTED: kinesin light chain 1-like [Sus scrofa]
gnl|UG|Ssc#S58311344	0	0	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein C2orf42 homolog (LOC100511319), mRNA /cds=p(295,2019) /gb=XM_003125056 /gi=311252454 /ug=Ssc.48178 /len=2834"	-	-	-	gi|311252455|ref|XP_003125104.1|/0/PREDICTED: uncharacterized protein C2orf42 homolog [Sus scrofa]
gnl|UG|Ssc#S17510471	0	0	0	0	0	0	"BX665497 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0009.a.03 5prim, mRNA sequence /clone=scag0009.a.03 /clone_end=5' /gb=BX665497 /gi=90233951 /ug=Ssc.12273 /len=876"	GO:0000267//cell fraction;GO:0044424//intracellular part	"GO:0005515//protein binding;GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups"	GO:0006790//sulfur compound metabolic process;GO:0001885//endothelial cell development;GO:0048545//response to steroid hormone stimulus	gi|311254647|ref|XP_003125913.1|/2.56631e-123/PREDICTED: glutathione S-transferase Mu 5-like [Sus scrofa]
gnl|UG|Ssc#S46876787	15	4.32	6	1.72	0	0	"PREDICTED: Sus scrofa DnaJ (Hsp40) homolog, subfamily B, member 12 (DNAJB12), mRNA /cds=p(315,1445) /gb=XM_001924319 /gi=194042783 /ug=Ssc.17322 /len=3331"	-	-	-	-
gnl|UG|Ssc#S55327284	13	3.74	6	1.72	11	3.31	"Sus scrofa mRNA, clone:OVR010017G05, expressed in ovary /gb=AK347365 /gi=288576772 /ug=Ssc.35024 /len=3251"	GO:0043189//H4/H2A histone acetyltransferase complex	GO:0001071//nucleic acid binding transcription factor activity;GO:0004879//ligand-dependent nuclear receptor activity	"GO:0006355//regulation of transcription, DNA-dependent;GO:0007165//signal transduction;GO:0016573//histone acetylation"	gi|311250209|ref|XP_003124010.1|/0/PREDICTED: bromodomain-containing protein 8-like [Sus scrofa]
gnl|UG|Ssc#S46877978	0	0	0	0	0	0	"PREDICTED: Sus scrofa zinc finger and BTB domain containing 22 (ZBTB22), mRNA /cds=p(1,1920) /gb=XM_001927786 /gi=194040294 /ug=Ssc.19419 /len=2521"	-	GO:0005488//binding	-	gi|194040295|ref|XP_001927821.1|/0/PREDICTED: zinc finger and BTB domain-containing protein 22 [Sus scrofa]
gnl|UG|Ssc#S58314372	40	11.52	22	6.29	46	13.82	"PREDICTED: Sus scrofa DNA repair protein complementing XP-A cells-like (LOC100522779), mRNA /cds=p(23,844) /gb=XM_003122025 /gi=311246088 /ug=Ssc.25793 /len=2125"	GO:0031981//nuclear lumen	GO:0043169//cation binding;GO:0042802//identical protein binding;GO:0003677//DNA binding	GO:0006289//nucleotide-excision repair;GO:0009416//response to light stimulus;GO:0042221//response to chemical stimulus;GO:0008629//induction of apoptosis by intracellular signals	gi|311246089|ref|XP_003122073.1|/2.0776e-108/PREDICTED: DNA repair protein complementing XP-A cells-like [Sus scrofa]
gnl|UG|Ssc#S58311618	2	0.58	0	0	7	2.1	"PREDICTED: Sus scrofa osteomodulin-like (LOC100511925), mRNA /cds=p(168,1436) /gb=XM_003124781 /gi=311251897 /ug=Ssc.95437 /len=1873"	GO:0031012//extracellular matrix	-	GO:0030278//regulation of ossification;GO:0009987//cellular process	gi|311251898|ref|XP_003124829.1|/0/PREDICTED: osteomodulin-like [Sus scrofa]
gnl|UG|Ssc#S58311392	3	0.86	2	0.57	0	0	"PREDICTED: Sus scrofa dynactin 1 (DCTN1), mRNA /cds=p(259,4200) /gb=XM_003125021 /gi=311252356 /ug=Ssc.81823 /len=4544"	"GO:0005875//microtubule associated complex;GO:0044444//cytoplasmic part;GO:0005819//spindle;GO:0000775//chromosome, centromeric region"	GO:0005488//binding;GO:0017111//nucleoside-triphosphatase activity	GO:0048731;GO:0000087//M phase of mitotic cell cycle	gi|311252357|ref|XP_003125069.1|/0/PREDICTED: dynactin subunit 1-like [Sus scrofa]
gnl|UG|Ssc#S46875935	14	4.03	8	2.29	6	1.8	"PREDICTED: Sus scrofa RAB5-interacting protein (LOC100155351), mRNA /cds=p(207,596) /gb=XM_001927682 /gi=311274808 /ug=Ssc.81349 /len=1089"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|10047116|ref|NP_061328.1|/2.82134e-67/RAB5-interacting protein isoform a [Homo sapiens]
gnl|UG|Ssc#S35166269	3	0.86	3	0.86	2	0.6	"Sus scrofa mRNA, clone:OVRM10213G08, expressed in ovary /gb=AK236672 /gi=115553469 /ug=Ssc.27044 /len=1531"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0017111//nucleoside-triphosphatase activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0032559	"GO:0006355//regulation of transcription, DNA-dependent;GO:0009207;GO:0006325//chromatin organization"	gi|73990698|ref|XP_534300.2|/0/PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a3 [Canis familiaris]
gnl|UG|Ssc#S26714890	8	2.3	3	0.86	7	2.1	"AJ950974 KN404_1 Sus scrofa cDNA clone C0007739l11 5', mRNA sequence /clone=C0007739l11 /clone_end=5' /gb=AJ950974 /gi=74367790 /ug=Ssc.87675 /len=506"	GO:0005746//mitochondrial respiratory chain	GO:0050136//NADH dehydrogenase (quinone) activity	GO:0007417//central nervous system development;GO:0006468//protein phosphorylation;GO:0010257;GO:0022904//respiratory electron transport chain;GO:0051234//establishment of localization;GO:0019935//cyclic-nucleotide-mediated signaling;GO:0008284//positive regulation of cell proliferation;GO:0010033//response to organic substance	"gi|311273704|ref|XP_003134000.1|/4.97384e-25/PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35172402	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:SPL010101A08, expressed in spleen /gb=AK237815 /gi=115547433 /ug=Ssc.18587 /len=2621"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0008168//methyltransferase activity	GO:0006305;GO:0006730//one-carbon metabolic process	gi|296474810|gb|DAA16925.1|/6.36201e-56/HemK methyltransferase family member 1 [Bos taurus]
gnl|UG|Ssc#S58313544	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa tetratricopeptide repeat domain 17 (TTC17), mRNA /cds=p(1,3426) /gb=XM_003122855 /gi=311247960 /ug=Ssc.18899 /len=4407"	-	-	-	gi|311247961|ref|XP_003122903.1|/0/PREDICTED: tetratricopeptide repeat protein 17-like [Sus scrofa]
gnl|UG|Ssc#S55934062	30	8.64	21	6	40	12.02	"Sus scrofa signal sequence receptor, alpha (SSR1), mRNA /cds=p(102,962) /gb=NM_001185167 /gi=297632425 /ug=Ssc.23018 /len=3366"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity;GO:0042277//peptide binding	GO:0008283//cell proliferation;GO:0006612//protein targeting to membrane	"gi|297632426|ref|NP_001172096.1|/3.07647e-120/signal sequence receptor, alpha [Sus scrofa]"
gnl|UG|Ssc#S55322964	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:DCI010007B02, expressed in dendritic cells (immature) /gb=AK344318 /gi=288781908 /ug=Ssc.11572 /len=1941"	GO:0031981//nuclear lumen;GO:0016585//chromatin remodeling complex;GO:0044427;GO:0005819//spindle	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0017136//NAD-dependent histone deacetylase activity;GO:0019899//enzyme binding	GO:0000278//mitotic cell cycle;GO:0032583//regulation of gene-specific transcription;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0042221//response to chemical stimulus;GO:0006476//protein deacetylation;GO:0043409//negative regulation of MAPKKK cascade;GO:0007051//spindle organization;GO:0010830;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0051726//regulation of cell cycle;GO:0006629//lipid metabolic process;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0035264//multicellular organism growth;GO:0043066//negative regulation of apoptosis;GO:0006325//chromatin organization;GO:0007623//circadian rhythm	gi|13128862|ref|NP_003874.2|/0/histone deacetylase 3 [Homo sapiens]
gnl|UG|Ssc#S58310762	3	0.86	2	0.57	4	1.2	"PREDICTED: Sus scrofa DDB1- and CUL4-associated factor 6-like (LOC100514228), mRNA /cds=p(327,2921) /gb=XM_003125644 /gi=311253887 /ug=Ssc.9202 /len=2921"	GO:0043231//intracellular membrane-bounded organelle;GO:0031461//cullin-RING ubiquitin ligase complex	GO:0003713//transcription coactivator activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0032446//protein modification by small protein conjugation	gi|311253888|ref|XP_003125692.1|/0/PREDICTED: DDB1- and CUL4-associated factor 6-like [Sus scrofa]
gnl|UG|Ssc#S20938701	121	34.84	58	16.58	135	40.57	"AJ650424 CSEQRAN19 Sus scrofa cDNA clone C0003275_F02, mRNA sequence /clone=C0003275_F02 /gb=AJ650424 /gi=49327269 /ug=Ssc.85491 /len=472"	"GO:0033178//proton-transporting two-sector ATPase complex, catalytic domain;GO:0005753//mitochondrial proton-transporting ATP synthase complex"	GO:0042287//MHC protein binding;GO:0019829//cation-transporting ATPase activity;GO:0015078//hydrogen ion transmembrane transporter activity;GO:0032559;GO:0043498//cell surface binding	"GO:0009180;GO:0007275//multicellular organismal development;GO:0001935//endothelial cell proliferation;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0009207;GO:0006754//ATP biosynthetic process"	"gi|291394323|ref|XP_002713558.1|/5.64468e-80/PREDICTED: ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit-like [Oryctolagus cuniculus]"
gnl|UG|Ssc#S46875948	2	0.58	3	0.86	0	0	"PREDICTED: Sus scrofa RNA-binding protein 12-like, transcript variant 1 (LOC100157350), mRNA /cds=p(373,3090) /gb=XM_001924279 /gi=311274783 /ug=Ssc.3976 /len=3845"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	-	gi|311274784|ref|XP_001924314.2|/0/PREDICTED: RNA-binding protein 12-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55322951	4	1.15	2	0.57	0	0	"Sus scrofa mRNA, clone:DCI010012C06, expressed in dendritic cells (immature) /gb=AK344331 /gi=288781921 /ug=Ssc.48866 /len=1343"	GO:0031224//intrinsic to membrane	GO:0015149//hexose transmembrane transporter activity	GO:0008645//hexose transport;GO:0044238//primary metabolic process	"gi|296480402|gb|DAA22517.1|/7.9459e-57/solute carrier family 2, facilitated glucose transporter member 5 [Bos taurus]"
gnl|UG|Ssc#S55325065	4	1.15	4	1.14	2	0.6	"Sus scrofa mRNA, clone:PTG010100F12, expressed in pituitary gland /gb=AK349543 /gi=288779807 /ug=Ssc.24585 /len=1777"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	-	gi|256818748|ref|NP_001129696.2|/0/REST corepressor 3 isoform b [Homo sapiens]
gnl|UG|Ssc#S36162702	314	90.4	494	141.21	108	32.46	"Sus scrofa PSMB7 (PSMB7) mRNA, complete cds /cds=p(16,849) /gb=DQ629163 /gi=117660968 /ug=Ssc.16968 /len=997"	-	-	-	-
gnl|UG|Ssc#S20936794	8	2.3	10	2.86	8	2.4	"AJ648517 CSEQRAN19 Sus scrofa cDNA clone C0003264_O01, mRNA sequence /clone=C0003264_O01 /gb=AJ648517 /gi=49325362 /ug=Ssc.74065 /len=568"	GO:0043231//intracellular membrane-bounded organelle	"GO:0008135//translation factor activity, nucleic acid binding"	"GO:0006351//transcription, DNA-dependent;GO:0006412//translation"	gi|62079285|ref|NP_001014297.1|/1.65269e-48/transcription elongation factor A protein-like 8 [Rattus norvegicus]
gnl|UG|Ssc#S46880831	16	4.61	13	3.72	16	4.81	"PREDICTED: Sus scrofa ras-related GTP-binding protein A-like (LOC100153321), mRNA /cds=p(1,1551) /gb=XM_001927037 /gi=311245739 /ug=Ssc.17161 /len=1989"	-	-	-	-
gnl|UG|Ssc#S18547854	13	3.74	12	3.43	11	3.31	"BX916505 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0032.l.09 5prim, mRNA sequence /clone=scan0032.l.09 /clone_end=5' /gb=BX916505 /gi=90232183 /ug=Ssc.84891 /len=839"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0005515//protein binding	GO:0006915//apoptosis;GO:0030261//chromosome condensation;GO:0002763//positive regulation of myeloid leukocyte differentiation;GO:0009207	gi|157279013|gb|AAI53285.1|/5.55048e-112/ACIN1 protein [Bos taurus]
gnl|UG|Ssc#S46879233	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa centrosomal protein of 290 kDa-like (LOC100155832), mRNA /cds=p(1,7446) /gb=XM_001928207 /gi=311256733 /ug=Ssc.78881 /len=8002"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0031513//nonmotile primary cilium	GO:0030528//transcription regulator activity;GO:0008017//microtubule binding	GO:0006810//transport;GO:0022402//cell cycle process;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0007420//brain development;GO:0001822//kidney development;GO:0001754//eye photoreceptor cell differentiation;GO:0071842	gi|194037700|ref|XP_001928242.1|/0/PREDICTED: centrosomal protein of 290 kDa-like [Sus scrofa]
gnl|UG|Ssc#S46876928	13	3.74	21	6	9	2.7	"PREDICTED: Sus scrofa insulin-degrading enzyme (IDE), mRNA /cds=p(1,2994) /gb=XM_001925381 /gi=311271634 /ug=Ssc.9109 /len=5222"	GO:0000267//cell fraction;GO:0000502//proteasome complex;GO:0044439;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0017046//peptide hormone binding;GO:0017111//nucleoside-triphosphatase activity;GO:0060089;GO:0042165//neurotransmitter binding;GO:0042802//identical protein binding;GO:0032559	GO:0043171//peptide catabolic process;GO:0030162//regulation of proteolysis;GO:0003006//developmental process involved in reproduction;GO:0009100//glycoprotein metabolic process;GO:0023052//signaling;GO:0009207;GO:0030163//protein catabolic process;GO:0051704;GO:0051260//protein homooligomerization	gi|311271635|ref|XP_001925416.2|/0/PREDICTED: insulin-degrading enzyme [Sus scrofa]
gnl|UG|Ssc#S20939030	2	0.58	0	0	4	1.2	"AJ650753 CSEQRAN19 Sus scrofa cDNA clone C0003276_D19, mRNA sequence /clone=C0003276_D19 /gb=AJ650753 /gi=49327598 /ug=Ssc.85667 /len=450"	-	-	-	gi|157822527|ref|NP_001099492.1|/2.38694e-77/prdX-deacylase domain-containing protein 1 [Rattus norvegicus]
gnl|UG|Ssc#S58302730	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa serine/threonine-protein kinase 36-like (LOC100519396), mRNA /cds=p(94,1188) /gb=XM_003133666 /gi=311273076 /ug=Ssc.15158 /len=1875"	-	-	-	-
gnl|UG|Ssc#S17503823	2	0.58	2	0.57	3	0.9	"879455 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF791279 /gi=37795840 /ug=Ssc.83489 /len=531"	-	-	-	-
gnl|UG|Ssc#S18943248	14	4.03	4	1.14	16	4.81	"Sus scrofa adipocyte determination and differentiation-dependent factor 1 (ADD1) mRNA, complete cds /cds=p(11,3466) /gb=AY496867 /gi=42521301 /ug=Ssc.15992 /len=3830"	-	-	-	-
gnl|UG|Ssc#S58312858	0	0	0	0	0	0	"PREDICTED: Sus scrofa SURP and G patch domain containing 2 (SUGP2), mRNA /cds=p(1,3255) /gb=XM_003123545 /gi=311249350 /ug=Ssc.19345 /len=3520"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0006396//RNA processing	"gi|311249351|ref|XP_003123593.1|/0/PREDICTED: putative splicing factor, arginine/serine-rich 14-like [Sus scrofa]"
gnl|UG|Ssc#S58308523	32	9.21	54	15.44	35	10.52	"PREDICTED: Sus scrofa TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa (TAF4B), mRNA /cds=p(313,2907) /gb=XM_003127875 /gi=311259073 /ug=Ssc.37551 /len=3165"	GO:0005667//transcription factor complex	GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0008134//transcription factor binding;GO:0003702//RNA polymerase II transcription factor activity	"GO:0006352//transcription initiation, DNA-dependent;GO:0006354//transcription elongation, DNA-dependent"	gi|311259074|ref|XP_003127923.1|/0/PREDICTED: transcription initiation factor TFIID subunit 4B [Sus scrofa]
gnl|UG|Ssc#S38675458	6	1.73	0	0	0	0	"Sus scrofa BRCA1 mRNA for breast cancer type 1 susceptibility protein homolog, partial cds /cds=p(1,5592) /gb=AB271921 /gi=146741281 /ug=Ssc.24110 /len=5777"	GO:0031981//nuclear lumen;GO:0000931//gamma-tubulin large complex;GO:0044429//mitochondrial part;GO:0005694//chromosome;GO:0000152//nuclear ubiquitin ligase complex	GO:0019787//small conjugating protein ligase activity;GO:0030528//transcription regulator activity;GO:0035258//steroid hormone receptor binding;GO:0003712//transcription cofactor activity;GO:0008092//cytoskeletal protein binding;GO:0003677//DNA binding;GO:0046914//transition metal ion binding;GO:0019899//enzyme binding	"GO:0031327;GO:0031667//response to nutrient levels;GO:0009314//response to radiation;GO:0046599//regulation of centriole replication;GO:0007549//dosage compensation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0000077//DNA damage checkpoint;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0009792//embryo development ending in birth or egg hatching;GO:0008629//induction of apoptosis by intracellular signals;GO:0000725//recombinational repair;GO:0006282//regulation of DNA repair;GO:0048545//response to steroid hormone stimulus;GO:0007417//central nervous system development;GO:0008283//cell proliferation;GO:0071310//cellular response to organic substance;GO:0030518//steroid hormone receptor signaling pathway;GO:0000209//protein polyubiquitination;GO:0006631//fatty acid metabolic process"	gi|146741282|dbj|BAF62296.1|/0/breast cancer type 1 susceptibility protein homolog [Sus scrofa]
gnl|UG|Ssc#S58306374	2	0.58	2	0.57	2	0.6	"PREDICTED: Sus scrofa transforming growth factor beta regulator 1-like (LOC100521637), mRNA /cds=p(239,1474) /gb=XM_003130020 /gi=311264245 /ug=Ssc.3839 /len=2551"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0006259//DNA metabolic process;GO:0008283//cell proliferation;GO:0051169//nuclear transport;GO:0022402//cell cycle process;GO:0031647//regulation of protein stability	gi|311264246|ref|XP_003130068.1|/0/PREDICTED: transforming growth factor beta regulator 1-like [Sus scrofa]
gnl|UG|Ssc#S35170959	4	1.15	3	0.86	2	0.6	"Sus scrofa mRNA, clone:OVRM10064H06, expressed in ovary /gb=AK235283 /gi=115548880 /ug=Ssc.8175 /len=1600"	GO:0031981//nuclear lumen;GO:0070603//SWI/SNF-type complex;GO:0000267//cell fraction;GO:0005694//chromosome	GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0016407//acetyltransferase activity;GO:0005515//protein binding	"GO:0048731;GO:0006355//regulation of transcription, DNA-dependent;GO:0034728"	gi|301779135|ref|XP_002925003.1|/9.67256e-176/PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35167514	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:AMP010007D08, expressed in alveolar macrophage /gb=AK230534 /gi=115552225 /ug=Ssc.45490 /len=2693"	GO:0005622//intracellular	GO:0005488//binding	-	gi|194039872|ref|XP_001928434.1|/0/PREDICTED: zinc finger protein 322A [Sus scrofa]
gnl|UG|Ssc#S46879687	32	9.21	25	7.15	4	1.2	"PREDICTED: Sus scrofa CCAAT/enhancer-binding protein delta-like (LOC100153946), mRNA /cds=p(188,958) /gb=XM_001925928 /gi=311253854 /ug=Ssc.10025 /len=2333"	GO:0043231//intracellular membrane-bounded organelle	GO:0042802//identical protein binding;GO:0043565//sequence-specific DNA binding;GO:0003702//RNA polymerase II transcription factor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0030154//cell differentiation	gi|194036763|ref|XP_001925963.1|/3.26449e-94/PREDICTED: CCAAT/enhancer-binding protein delta-like [Sus scrofa]
gnl|UG|Ssc#S35168055	65	18.71	17	4.86	37	11.12	"Sus scrofa mRNA, clone:THY010063C12, expressed in thymus /gb=AK239099 /gi=115551635 /ug=Ssc.12592 /len=1323"	-	-	GO:0032501//multicellular organismal process;GO:0043066//negative regulation of apoptosis;GO:0065008;GO:0008283//cell proliferation	gi|311257004|ref|XP_003126900.1|/3.77623e-128/PREDICTED: craniofacial development protein 1 [Sus scrofa]
gnl|UG|Ssc#S58308773	13	3.74	10	2.86	5	1.5	"PREDICTED: Sus scrofa DNA-damage inducible 1 homolog 2 (S. cerevisiae) (DDI2), mRNA /cds=p(1,1200) /gb=XM_003127620 /gi=311258557 /ug=Ssc.87891 /len=1445"	-	GO:0004175//endopeptidase activity	GO:0019538//protein metabolic process	gi|296479099|gb|DAA21214.1|/0/Beta-subunit of Na/D-glucose cotransporter-like [Bos taurus]
gnl|UG|Ssc#S23776792	0	0	0	0	0	0	"999620 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN134411 /gi=59828728 /ug=Ssc.72571 /len=872"	GO:0035097//histone methyltransferase complex	GO:0005488//binding	-	gi|164420729|ref|NP_001070283.2|/2.23441e-119/protein LAS1 homolog [Bos taurus]
gnl|UG|Ssc#S58305398	5	1.44	7	2	3	0.9	"PREDICTED: Sus scrofa WW domain-binding protein 4-like (LOC100512188), mRNA /cds=p(157,1278) /gb=XM_003130997 /gi=311266325 /ug=Ssc.11213 /len=1681"	GO:0016604//nuclear body;GO:0030529//ribonucleoprotein complex	GO:0005515//protein binding	"GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|311266326|ref|XP_003131045.1|/1.21483e-161/PREDICTED: WW domain-binding protein 4-like [Sus scrofa]
gnl|UG|Ssc#S58310336	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa myosin-9-like (LOC100152053), mRNA /cds=p(178,5604) /gb=XM_003126065 /gi=311255166 /ug=Ssc.49491 /len=6208"	GO:0005911//cell-cell junction;GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle;GO:0032432//actin filament bundle;GO:0015630//microtubule cytoskeleton;GO:0032155;GO:0031252//cell leading edge;GO:0031254//trailing edge;GO:0005887//integral to plasma membrane;GO:0044444//cytoplasmic part;GO:0045202//synapse	"GO:0003779//actin binding;GO:0042802//identical protein binding;GO:0032559;GO:0003774//motor activity;GO:0042623//ATPase activity, coupled"	GO:0007166//cell surface receptor linked signaling pathway;GO:0006810//transport;GO:0043542//endothelial cell migration;GO:0007127//meiosis I;GO:0007155//cell adhesion;GO:0001767;GO:0007051//spindle organization;GO:0065008;GO:0002573//myeloid leukocyte differentiation;GO:0000902//cell morphogenesis;GO:0043009//chordate embryonic development;GO:0009207;GO:0000768//syncytium formation by plasma membrane fusion;GO:0030036//actin cytoskeleton organization;GO:0030030//cell projection organization;GO:0006935//chemotaxis;GO:0033619//membrane protein proteolysis	gi|311255167|ref|XP_003126113.1|/0/PREDICTED: myosin-9-like [Sus scrofa]
gnl|UG|Ssc#S58305509	52	14.97	77	22.01	67	20.14	"PREDICTED: Sus scrofa cyclin-dependent kinase 8 (CDK8), mRNA /cds=p(48,1259) /gb=XM_003130889 /gi=311266020 /ug=Ssc.7933 /len=2425"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0004674//protein serine/threonine kinase activity;GO:0032559	"GO:0006351//transcription, DNA-dependent;GO:0006464//protein modification process"	gi|73993398|ref|XP_849851.1|/0/PREDICTED: similar to Cell division protein kinase 8 (Protein kinase K35) isoform 2 [Canis familiaris]
gnl|UG|Ssc#S43509620	0	0	2	0.57	3	0.9	"Sus scrofa activity-dependent neuroprotector homeobox (ADNP), mRNA /cds=p(647,3958) /gb=NM_001123071 /gi=178057228 /ug=Ssc.42083 /len=5032"	GO:0031981//nuclear lumen;GO:0043005//neuron projection;GO:0044297//cell body;GO:0044421//extracellular region part	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0015631//tubulin binding;GO:0046914//transition metal ion binding	"GO:0033483;GO:0050804//regulation of synaptic transmission;GO:0006471//protein ADP-ribosylation;GO:0043523//regulation of neuron apoptosis;GO:0007613//memory;GO:0006351//transcription, DNA-dependent;GO:0001934//positive regulation of protein phosphorylation;GO:0044089//positive regulation of cellular component biogenesis;GO:0010033//response to organic substance;GO:0010975//regulation of neuron projection development;GO:0043066//negative regulation of apoptosis;GO:0030307//positive regulation of cell growth;GO:0043393//regulation of protein binding;GO:0006182//cGMP biosynthetic process;GO:0022602//ovulation cycle process;GO:0045860//positive regulation of protein kinase activity"	gi|178057229|ref|NP_001116543.1|/0/activity-dependent neuroprotector homeobox protein [Sus scrofa]
gnl|UG|Ssc#S58306475	30	8.64	16	4.57	31	9.32	"PREDICTED: Sus scrofa hypoxia up-regulated 1 (HYOU1), mRNA /cds=p(130,3129) /gb=XM_003129922 /gi=311264041 /ug=Ssc.2087 /len=3129"	GO:0044432//endoplasmic reticulum part	GO:0032559	GO:0006950//response to stress	gi|311264042|ref|XP_003129970.1|/0/PREDICTED: hypoxia up-regulated protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58311907	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase BRE1B-like (LOC100512462), mRNA /cds=p(124,2754) /gb=XM_003124500 /gi=311251293 /ug=Ssc.5317 /len=3818"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0005624//membrane fraction	GO:0046872//metal ion binding;GO:0042802//identical protein binding;GO:0019899//enzyme binding;GO:0019787//small conjugating protein ligase activity	GO:0016574//histone ubiquitination;GO:0019941//modification-dependent protein catabolic process;GO:0006513//protein monoubiquitination	gi|311251294|ref|XP_003124548.1|/0/PREDICTED: e3 ubiquitin-protein ligase BRE1B-like [Sus scrofa]
gnl|UG|Ssc#S39796258	5	1.44	2	0.57	2	0.6	"rcad25b_c6.y1 cag Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV891536 /gi=178542097 /ug=Ssc.87998 /len=579"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0016020//membrane	-	"GO:0006351//transcription, DNA-dependent"	gi|300872546|gb|ADK39026.1|/6.57859e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S46876914	5	1.44	0	0	2	0.6	"PREDICTED: Sus scrofa transmembrane protein 20 (TMEM20), mRNA /cds=p(88,1188) /gb=XM_001928762 /gi=311271651 /ug=Ssc.61626 /len=1395"	GO:0016020//membrane	-	-	gi|311271652|ref|XP_001928797.2|/0/PREDICTED: transmembrane protein 20 [Sus scrofa]
gnl|UG|Ssc#S58306262	73	21.02	61	17.44	41	12.32	"PREDICTED: Sus scrofa myocyte A kinase anchor protein (AKAP), mRNA /cds=p(235,11931) /gb=XM_003130133 /gi=311264472 /ug=Ssc.1384 /len=12442"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	GO:0051234//establishment of localization;GO:0007267//cell-cell signaling;GO:0022402//cell cycle process	gi|311264473|ref|XP_003130181.1|/0/PREDICTED: LOW QUALITY PROTEIN: a-kinase anchor protein 9 [Sus scrofa]
gnl|UG|Ssc#S46877984	104	29.94	65	18.58	97	29.15	"PREDICTED: Sus scrofa vacuolar protein sorting 52 homolog (S. cerevisiae) (VPS52), mRNA /cds=p(247,2418) /gb=XM_001925393 /gi=311260228 /ug=Ssc.54672 /len=2984"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	-	GO:0006810//transport	gi|311260229|ref|XP_001925428.2|/0/PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Sus scrofa]
gnl|UG|Ssc#S26711016	0	0	0	0	3	0.9	"AJ947100 KN404_1 Sus scrofa cDNA clone C0007735i21 3', mRNA sequence /clone=C0007735i21 /clone_end=3' /gb=AJ947100 /gi=74363842 /ug=Ssc.37005 /len=694"	-	-	-	-
gnl|UG|Ssc#S58312486	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa folliculin-interacting protein 1-like (LOC100521611), mRNA /cds=p(1,3483) /gb=XM_003123919 /gi=311250110 /ug=Ssc.13512 /len=6163"	GO:0044424//intracellular part	GO:0005488//binding	GO:0006468//protein phosphorylation	gi|311250111|ref|XP_003123967.1|/0/PREDICTED: LOW QUALITY PROTEIN: folliculin-interacting protein 1-like [Sus scrofa]
gnl|UG|Ssc#S19548973	0	0	0	0	2	0.6	"995485 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN165085 /gi=46179515 /ug=Ssc.58937 /len=825"	-	-	-	-
gnl|UG|Ssc#S46878368	3	0.86	0	0	9	2.7	"PREDICTED: Sus scrofa calcium and integrin binding family member 2, transcript variant 1 (CIB2), mRNA /cds=p(57,620) /gb=XM_001927247 /gi=311260603 /ug=Ssc.21853 /len=1274"	-	"GO:0046872//metal ion binding;GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0006796//phosphate metabolic process	gi|62543507|ref|NP_001015010.1|/3.60506e-104/calcium and integrin-binding family member 2 [Rattus norvegicus]
gnl|UG|Ssc#S58303946	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa RAS p21 protein activator 2 (RASA2), mRNA /cds=p(1,2682) /gb=XM_003132454 /gi=311269466 /ug=Ssc.10534 /len=3930"	GO:0009898//internal side of plasma membrane;GO:0043227//membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0005083//small GTPase regulator activity;GO:0008047//enzyme activator activity	GO:0032318//regulation of Ras GTPase activity	gi|311269467|ref|XP_003132502.1|/0/PREDICTED: ras GTPase-activating protein 2-like [Sus scrofa]
gnl|UG|Ssc#S46877280	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa Tectonic-3, transcript variant 2 (LOC100157208), mRNA /cds=p(88,1911) /gb=XM_001927634 /gi=311271674 /ug=Ssc.5488 /len=2605"	GO:0031224//intrinsic to membrane	-	GO:0012501//programmed cell death	gi|194041765|ref|XP_001927669.1|/0/PREDICTED: tectonic-3 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S55322663	6	1.73	0	0	0	0	"Sus scrofa mRNA, clone:DCI010042H09, expressed in dendritic cells (immature) /gb=AK344420 /gi=288782209 /ug=Ssc.54552 /len=1652"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0030695//GTPase regulator activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0005515//protein binding"	GO:0008366//axon ensheathment;GO:0022602//ovulation cycle process;GO:0009725//response to hormone stimulus;GO:0009746;GO:0032055//negative regulation of translation in response to stress;GO:0021782//glial cell development;GO:0006446//regulation of translational initiation	gi|296482289|gb|DAA24404.1|/0/translation initiation factor eIF-2B subunit delta [Bos taurus]
gnl|UG|Ssc#S55834194	4	1.15	0	0	0	0	"Sus scrofa phosphomannomutase 1 (PMM1), mRNA /cds=p(333,1121) /gb=NM_001184895 /gi=296434324 /ug=Ssc.20303 /len=1533"	GO:0044444//cytoplasmic part;GO:0044297//cell body	"GO:0043169//cation binding;GO:0016868//intramolecular transferase activity, phosphotransferases"	GO:0009226//nucleotide-sugar biosynthetic process;GO:0006013//mannose metabolic process;GO:0006487//protein N-linked glycosylation	gi|296434325|ref|NP_001171824.1|/6.78912e-148/phosphomannomutase 1 [Sus scrofa]
gnl|UG|Ssc#S35171326	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10052C05, expressed in ovary /gb=AK235130 /gi=115548513 /ug=Ssc.3121 /len=1758"	-	-	-	-
gnl|UG|Ssc#S23765666	0	0	2	0.57	0	0	"1123567 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN123285 /gi=59817564 /ug=Ssc.41472 /len=827"	-	-	-	-
gnl|UG|Ssc#S35170528	15	4.32	6	1.72	14	4.21	"Sus scrofa mRNA, clone:OVRM10060C04, expressed in ovary /gb=AK235232 /gi=115549311 /ug=Ssc.20441 /len=1714"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0000981//sequence-specific DNA binding RNA polymerase II transcription factor activity;GO:0042802//identical protein binding;GO:0046983//protein dimerization activity;GO:0008134//transcription factor binding;GO:0043566//structure-specific DNA binding	GO:0009299//mRNA transcription;GO:0000430//regulation of transcription from RNA polymerase II promoter by glucose;GO:0048878//chemical homeostasis;GO:0007589//body fluid secretion;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|311257380|ref|XP_003127089.1|/1.1864e-154/PREDICTED: upstream stimulatory factor 2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S35169731	3	0.86	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10095A10, expressed in ovary /gb=AK235587 /gi=115550108 /ug=Ssc.7106 /len=1593"	GO:0044444//cytoplasmic part;GO:0016020//membrane	"GO:0016702//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen;GO:0005506//iron ion binding"	GO:0006952//defense response;GO:0019448//L-cysteine catabolic process;GO:0009309//amine biosynthetic process;GO:0001101//response to acid;GO:0043434//response to peptide hormone stimulus;GO:0007589//body fluid secretion;GO:0031960//response to corticosteroid stimulus	gi|264681440|ref|NP_001161115.1|/6.12489e-115/cysteine dioxygenase type 1 [Sus scrofa]
gnl|UG|Ssc#S18554195	61	17.56	117	33.44	63	18.93	"BX922846 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0021.j.10 5prim, mRNA sequence /clone=scan0021.j.10 /clone_end=5' /gb=BX922846 /gi=90240988 /ug=Ssc.55448 /len=837"	-	-	-	gi|90083234|dbj|BAE90699.1|/1.44512e-11/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S50200416	0	0	3	0.86	0	0	"susfleck_FC_N_49_C06 SUSFLECK Fat Cell Normalized Sus scrofa cDNA clone 49_C06, mRNA sequence /clone=49_C06 /gb=FD632252 /gi=221015421 /ug=Ssc.87629 /len=615"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0034061	GO:0006289//nucleotide-excision repair;GO:0000723//telomere maintenance;GO:0006261//DNA-dependent DNA replication;GO:0051320	gi|296213310|ref|XP_002807211.1|/4.39501e-105/PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like [Callithrix jacchus]
gnl|UG|Ssc#S50824710	0	0	8	2.29	5	1.5	"Sus scrofa mRNA for clathrin heavy chain (CLTC gene) /cds=p(1,5028) /gb=FM210346 /gi=224492555 /ug=Ssc.3596 /len=5028"	GO:0030117//membrane coat;GO:0005626//insoluble fraction;GO:0015630//microtubule cytoskeleton;GO:0012510//trans-Golgi network transport vesicle membrane;GO:0005905//coated pit;GO:0048770;GO:0042383//sarcolemma	GO:0008092//cytoskeletal protein binding	GO:0006898//receptor-mediated endocytosis;GO:0015031//protein transport;GO:0007173//epidermal growth factor receptor signaling pathway;GO:0006996//organelle organization;GO:0048193//Golgi vesicle transport;GO:0006935//chemotaxis;GO:0000087//M phase of mitotic cell cycle	gi|40788952|dbj|BAA04801.2|/0/KIAA0034 [Homo sapiens]
gnl|UG|Ssc#S46877572	55	15.83	51	14.58	79	23.74	"PREDICTED: Sus scrofa TSC22 domain family protein 2-like (LOC100155608), partial mRNA /cds=p(1,2493) /gb=XM_001925630 /gi=311269540 /ug=Ssc.21290 /len=4374"	-	-	-	"gi|311269541|ref|XP_001925665.2|/0/PREDICTED: LOW QUALITY PROTEIN: TSC22 domain family protein 2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S34518285	0	0	0	0	2	0.6	"DB788429 full-length enriched swine cDNA library, adult adrenal gland Sus scrofa cDNA clone ADR010078C11 5', mRNA sequence /clone=ADR010078C11 /clone_end=5' /gb=DB788429 /gi=112780998 /ug=Ssc.57350 /len=861"	GO:0044424//intracellular part	GO:0005515//protein binding	-	gi|194217787|ref|XP_001488576.2|/1.08765e-110/PREDICTED: similar to myosin phosphatase-Rho interacting protein [Equus caballus]
gnl|UG|Ssc#S58302032	67	19.29	35	10	66	19.83	"PREDICTED: Sus scrofa casein kinase II subunit alpha-like, transcript variant 2 (LOC100517435), mRNA /cds=p(424,1599) /gb=XM_003134360 /gi=311274645 /ug=Ssc.15634 /len=4389"	-	-	-	-
gnl|UG|Ssc#S35165306	5	1.44	8	2.29	6	1.8	"Sus scrofa mRNA, clone:LVRM10147D08, expressed in liver /gb=AK233430 /gi=115554420 /ug=Ssc.19830 /len=1187"	GO:0043231//intracellular membrane-bounded organelle	GO:0016791//phosphatase activity;GO:0005488//binding	GO:0006796//phosphate metabolic process	gi|149738632|ref|XP_001488533.1|/2.63756e-126/PREDICTED: similar to haloacid dehalogenase-like hydrolase domain containing 3 [Equus caballus]
gnl|UG|Ssc#S46877054	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa RPE-retinal G protein-coupled receptor-like (LOC100152832), mRNA /cds=p(37,912) /gb=XM_001927690 /gi=311271450 /ug=Ssc.32401 /len=1103"	GO:0016021//integral to membrane	GO:0005488//binding;GO:0004888//transmembrane receptor activity	GO:0006464//protein modification process;GO:0050953//sensory perception of light stimulus;GO:0007166//cell surface receptor linked signaling pathway	gi|194042226|ref|XP_001927725.1|/6.42551e-152/PREDICTED: RPE-retinal G protein-coupled receptor-like [Sus scrofa]
gnl|UG|Ssc#S17518895	5	1.44	2	0.57	2	0.6	"BX673465 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0041.f.14 5prim, mRNA sequence /clone=scac0041.f.14 /clone_end=5' /gb=BX673465 /gi=90241884 /ug=Ssc.83816 /len=816"	-	-	-	-
gnl|UG|Ssc#S55327202	5	1.44	2	0.57	3	0.9	"Sus scrofa mRNA, clone:OVR010033D08, expressed in ovary /gb=AK347447 /gi=288576854 /ug=Ssc.21523 /len=1457"	GO:0044464//cell part	-	GO:0048534;GO:0008283//cell proliferation	gi|311251581|ref|XP_003124674.1|/3.86165e-153/PREDICTED: protein rogdi homolog [Sus scrofa]
gnl|UG|Ssc#S58310306	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa calcium channel, voltage-dependent, beta 3 subunit (CACNB3), mRNA /cds=p(1,1476) /gb=XM_003126095 /gi=311255232 /ug=Ssc.3818 /len=2528"	GO:0034704//calcium channel complex;GO:0044459//plasma membrane part;GO:0044444//cytoplasmic part	GO:0005245//voltage-gated calcium channel activity;GO:0005488//binding	GO:0007267//cell-cell signaling;GO:0006816//calcium ion transport;GO:0050851//antigen receptor-mediated signaling pathway;GO:0032412;GO:0006935//chemotaxis;GO:0042391//regulation of membrane potential	gi|311255233|ref|XP_003126143.1|/0/PREDICTED: voltage-dependent L-type calcium channel subunit beta-3-like [Sus scrofa]
gnl|UG|Ssc#S58306800	185	53.26	145	41.45	100	30.05	"PREDICTED: Sus scrofa nucleoporin 98kDa (NUP98), mRNA /cds=p(1,5394) /gb=XM_003129602 /gi=311263380 /ug=Ssc.5533 /len=6534"	"GO:0005643//nuclear pore;GO:0000775//chromosome, centromeric region;GO:0031981//nuclear lumen"	GO:0005488//binding	GO:0006259//DNA metabolic process	gi|311263381|ref|XP_003129650.1|/0/PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Sus scrofa]
gnl|UG|Ssc#S20937762	377	108.54	80	22.87	549	164.99	"AJ649485 CSEQRAN19 Sus scrofa cDNA clone C0003272_J23, mRNA sequence /clone=C0003272_J23 /gb=AJ649485 /gi=49326330 /ug=Ssc.85603 /len=483"	GO:0015935//small ribosomal subunit	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|281350307|gb|EFB25891.1|/2.30997e-79/hypothetical protein PANDA_004337 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58312851	52	14.97	82	23.44	34	10.22	"PREDICTED: Sus scrofa ATPase type 13A1 (ATP13A1), mRNA /cds=p(1,3861) /gb=XM_003123554 /gi=311249364 /ug=Ssc.26408 /len=4100"	GO:0031224//intrinsic to membrane	"GO:0043169//cation binding;GO:0042625//ATPase activity, coupled to transmembrane movement of ions;GO:0032559"	GO:0009206;GO:0006811//ion transport;GO:0009207	gi|311249365|ref|XP_003123602.1|/0/PREDICTED: probable cation-transporting ATPase 13A1-like [Sus scrofa]
gnl|UG|Ssc#S55322622	29	8.35	37	10.58	56	16.83	"Sus scrofa mRNA, clone:DCI010058D07, expressed in dendritic cells (immature) /gb=AK344461 /gi=288782250 /ug=Ssc.27131 /len=1442"	GO:0043231//intracellular membrane-bounded organelle	GO:0016289//CoA hydrolase activity	GO:0051260//protein homooligomerization	gi|311259809|ref|XP_003128250.1|/1.02529e-73/PREDICTED: acyl-coenzyme A thioesterase 13-like [Sus scrofa]
gnl|UG|Ssc#S20939169	7	2.02	18	5.15	5	1.5	"AJ650892 CSEQRAN19 Sus scrofa cDNA clone C0003276_K05, mRNA sequence /clone=C0003276_K05 /gb=AJ650892 /gi=49327737 /ug=Ssc.74165 /len=564"	GO:0031224//intrinsic to membrane	-	-	gi|60359970|dbj|BAD90204.1|/1.31201e-33/mKIAA4036 protein [Mus musculus]
gnl|UG|Ssc#S20936754	24	6.91	4	1.14	9	2.7	"AJ648477 CSEQRAN19 Sus scrofa cDNA clone C0003264_M07, mRNA sequence /clone=C0003264_M07 /gb=AJ648477 /gi=49325322 /ug=Ssc.74119 /len=513"	"GO:0033178//proton-transporting two-sector ATPase complex, catalytic domain;GO:0005753//mitochondrial proton-transporting ATP synthase complex"	GO:0042287//MHC protein binding;GO:0019829//cation-transporting ATPase activity;GO:0015078//hydrogen ion transmembrane transporter activity;GO:0032559;GO:0043498//cell surface binding	"GO:0009180;GO:0007275//multicellular organismal development;GO:0001935//endothelial cell proliferation;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0009207;GO:0015986//ATP synthesis coupled proton transport"	gi|203055|gb|AAA40784.1|/5.09872e-65/ATP synthase alpha subunit precursor (EC 3.6.1.3) [Rattus norvegicus]
gnl|UG|Ssc#S46877589	2	0.58	5	1.43	5	1.5	"PREDICTED: Sus scrofa coatomer protein complex, subunit beta 2 (beta prime) (COPB2), mRNA /cds=p(1,2814) /gb=XM_001926104 /gi=311269454 /ug=Ssc.51974 /len=3135"	GO:0030137//COPI-coated vesicle;GO:0030120//vesicle coat	GO:0019901//protein kinase binding	GO:0048200;GO:0015031//protein transport	gi|311269455|ref|XP_001926139.2|/0/PREDICTED: coatomer subunit beta' [Sus scrofa]
gnl|UG|Ssc#S46878830	12	3.45	27	7.72	7	2.1	"PREDICTED: Sus scrofa ectonucleoside triphosphate diphosphohydrolase 5 (ENTPD5), mRNA /cds=p(148,1434) /gb=XM_001929140 /gi=194038539 /ug=Ssc.814 /len=1504"	GO:0044432//endoplasmic reticulum part	GO:0017110//nucleoside-diphosphatase activity	GO:0006007//glucose catabolic process;GO:0040007//growth;GO:0009205;GO:0009966//regulation of signal transduction;GO:0006486//protein glycosylation;GO:0006458//'de novo' protein folding	gi|194038540|ref|XP_001929175.1|/0/PREDICTED: ectonucleoside triphosphate diphosphohydrolase 5 [Sus scrofa]
gnl|UG|Ssc#S58302790	13	3.74	9	2.57	24	7.21	"PREDICTED: Sus scrofa ADAM metallopeptidase domain 23 (ADAM23), mRNA /cds=p(1,2199) /gb=XM_003133609 /gi=311272940 /ug=Ssc.11776 /len=2199"	GO:0016021//integral to membrane	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005102//receptor binding	GO:0019538//protein metabolic process;GO:0007166//cell surface receptor linked signaling pathway;GO:0007399//nervous system development	gi|311272941|ref|XP_003133657.1|/0/PREDICTED: disintegrin and metalloproteinase domain-containing protein 23-like [Sus scrofa]
gnl|UG|Ssc#S58306600	0	0	3	0.86	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100518322 (LOC100518322), mRNA /cds=p(1,2427) /gb=XM_003129798 /gi=311263786 /ug=Ssc.8270 /len=2427"	GO:0005815//microtubule organizing center;GO:0031981//nuclear lumen	GO:0042802//identical protein binding;GO:0019838//growth factor binding;GO:0015631//tubulin binding	GO:0022402//cell cycle process;GO:0051259//protein oligomerization;GO:0006606//protein import into nucleus;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007281//germ cell development	gi|311263787|ref|XP_003129846.1|/0/PREDICTED: hypothetical protein LOC100518322 [Sus scrofa]
gnl|UG|Ssc#S35172802	20	5.76	7	2	13	3.91	"Sus scrofa mRNA, clone:AMP010091E09, expressed in alveolar macrophage /gb=AK231088 /gi=115547033 /ug=Ssc.13548 /len=2940"	GO:0031981//nuclear lumen	GO:0043021//ribonucleoprotein binding	GO:0000054//ribosomal subunit export from nucleus	gi|115495387|ref|NP_001068888.1|/0/60S ribosomal export protein NMD3 [Bos taurus]
gnl|UG|Ssc#S58303231	22	6.33	6	1.72	31	9.32	"PREDICTED: Sus scrofa mitoferrin-2-like (LOC100526017), mRNA /cds=p(136,1215) /gb=XM_003133165 /gi=311271726 /ug=Ssc.5119 /len=1558"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	-	GO:0000041//transition metal ion transport	"gi|73998609|ref|XP_851341.1|/0/PREDICTED: similar to solute carrier family 25, member 28 [Canis familiaris]"
gnl|UG|Ssc#S58312734	0	0	0	0	0	0	"PREDICTED: Sus scrofa nuclear receptor binding SET domain protein 1 (NSD1), mRNA /cds=p(1,7248) /gb=XM_003123667 /gi=311249602 /ug=Ssc.25244 /len=7548"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0046914//transition metal ion binding;GO:0018024//histone-lysine N-methyltransferase activity;GO:0003712//transcription cofactor activity;GO:0042974//retinoic acid receptor binding;GO:0035258//steroid hormone receptor binding	GO:0007369//gastrulation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0034968//histone lysine methylation	"gi|311249603|ref|XP_003123715.1|/0/PREDICTED: histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific-like [Sus scrofa]"
gnl|UG|Ssc#S46877072	93	26.78	25	7.15	160	48.08	"PREDICTED: Sus scrofa ANXA11 protein (LOC100156481), mRNA /cds=p(280,1788) /gb=XM_001924178 /gi=194042188 /ug=Ssc.2918 /len=2531"	-	-	-	gi|194042189|ref|XP_001924213.1|/0/PREDICTED: annexin A11 [Sus scrofa]
gnl|UG|Ssc#S35172143	34	9.79	11	3.14	16	4.81	"Sus scrofa mRNA, clone:ITT010042E12, expressed in intestine /gb=AK231350 /gi=115547692 /ug=Ssc.16649 /len=2752"	-	-	-	-
gnl|UG|Ssc#S35168759	98	28.21	268	76.61	124	37.27	"Sus scrofa mRNA, clone:THY010031B03, expressed in thymus /gb=AK238792 /gi=115550931 /ug=Ssc.2284 /len=2364"	GO:0016585//chromatin remodeling complex	GO:0017136//NAD-dependent histone deacetylase activity;GO:0019901//protein kinase binding;GO:0008134//transcription factor binding	GO:0045596//negative regulation of cell differentiation;GO:0002042//cell migration involved in sprouting angiogenesis;GO:0001818//negative regulation of cytokine production;GO:0006325//chromatin organization	gi|300797967|ref|NP_001180070.1|/0/histone deacetylase 7 [Bos taurus]
gnl|UG|Ssc#S58302384	4	1.15	5	1.43	0	0	"PREDICTED: Sus scrofa protein LAP2-like (LOC100511418), mRNA /cds=p(164,1681) /gb=XM_003134001 /gi=311273832 /ug=Ssc.7309 /len=1945"	GO:0043231//intracellular membrane-bounded organelle;GO:0009925//basal plasma membrane;GO:0005578//proteinaceous extracellular matrix	GO:0005102//receptor binding;GO:0005198//structural molecule activity	GO:0008105//asymmetric protein localization;GO:0035088//establishment or maintenance of apical/basal cell polarity;GO:0040007//growth;GO:0007010//cytoskeleton organization;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|194223835|ref|XP_001915867.1|/0/PREDICTED: erbb2 interacting protein [Equus caballus]
gnl|UG|Ssc#S58312578	5	1.44	4	1.14	4	1.2	"PREDICTED: Sus scrofa mannosidase, alpha, class 2A, member 1 (MAN2A1), mRNA /cds=p(1,3435) /gb=XM_003123823 /gi=311249924 /ug=Ssc.48160 /len=3435"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0012505//endomembrane system	GO:0046914//transition metal ion binding;GO:0015924	GO:0006996//organelle organization;GO:0019318//hexose metabolic process;GO:0043009//chordate embryonic development;GO:0048513//organ development;GO:0006487//protein N-linked glycosylation	gi|311249925|ref|XP_003123871.1|/0/PREDICTED: alpha-mannosidase 2-like [Sus scrofa]
gnl|UG|Ssc#S58307731	2	0.58	2	0.57	2	0.6	"PREDICTED: Sus scrofa serine/threonine-protein kinase Nek9-like (LOC100515673), mRNA /cds=p(155,3112) /gb=XM_003128669 /gi=311261353 /ug=Ssc.72125 /len=3112"	GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0004672//protein kinase activity;GO:0032559;GO:0019900//kinase binding	GO:0006464//protein modification process;GO:0000087//M phase of mitotic cell cycle	gi|311261354|ref|XP_003128717.1|/0/PREDICTED: serine/threonine-protein kinase Nek9-like [Sus scrofa]
gnl|UG|Ssc#S35167840	41	11.8	10	2.86	24	7.21	"Sus scrofa mRNA, clone:OVRM10175E06, expressed in ovary /gb=AK236306 /gi=115551899 /ug=Ssc.15824 /len=2069"	-	-	-	-
gnl|UG|Ssc#S39980570	0	0	0	0	2	0.6	"rebs05c_g6.y1 ebs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW075635 /gi=181346640 /ug=Ssc.86448 /len=592"	-	GO:0005488//binding;GO:0008081//phosphoric diester hydrolase activity	GO:0019400	gi|194224172|ref|XP_001915521.1|/7.66752e-78/PREDICTED: similar to Putative glycerophosphodiester phosphodiesterase 5 [Equus caballus]
gnl|UG|Ssc#S46879871	45	12.96	36	10.29	31	9.32	"PREDICTED: Sus scrofa Ganglioside induced differentiation associated protein 2 (LOC100153342), mRNA /cds=p(244,1737) /gb=XM_001929181 /gi=311254498 /ug=Ssc.22261 /len=2363"	-	-	GO:0033189//response to vitamin A	gi|311254499|ref|XP_001929216.2|/0/PREDICTED: ganglioside-induced differentiation-associated protein 2 [Sus scrofa]
gnl|UG|Ssc#S55320319	6	1.73	3	0.86	6	1.8	"Sus scrofa mRNA, clone:THY010053G02, expressed in thymus /gb=AK351644 /gi=288784553 /ug=Ssc.94670 /len=1886"	GO:0033256//I-kappaB/NF-kappaB complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding	GO:0002460//adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;GO:0007166//cell surface receptor linked signaling pathway;GO:0048534;GO:0051091//positive regulation of transcription factor activity;GO:0002224//toll-like receptor signaling pathway;GO:0002266;GO:0043062//extracellular structure organization;GO:0002237//response to molecule of bacterial origin	gi|73998367|ref|XP_850995.1|/1.14606e-163/PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits (DNA-binding factor KBF2) (H2TF1) (Lymphocyte translocation chromosome 10) (Oncogene Lyt-10) (Lyt10) isoform 3 [Canis familiaris]
gnl|UG|Ssc#S35164571	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:MLN010023C06, expressed in mesenteric lymph node /gb=AK233770 /gi=115555155 /ug=Ssc.21569 /len=1059"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0006915//apoptosis;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0043623//cellular protein complex assembly	gi|114052206|ref|NP_001039830.1|/1.45732e-137/proteasome assembly chaperone 2 [Bos taurus]
gnl|UG|Ssc#S23213019	91	26.2	116	33.16	168	50.49	"Sus scrofa clone Clu_5266.scr.msk.p1.Contig1, mRNA sequence /gb=AY609989 /gi=52351559 /ug=Ssc.59344 /len=1506"	GO:0031224//intrinsic to membrane	-	-	gi|12383051|ref|NP_057276.2|/0/tomoregulin-2 precursor [Homo sapiens]
gnl|UG|Ssc#S58302638	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1-like (LOC100515175), mRNA /cds=p(1,597) /gb=XM_003133758 /gi=311273307 /ug=Ssc.50427 /len=623"	GO:0044424//intracellular part	GO:0005083//small GTPase regulator activity;GO:0046914//transition metal ion binding;GO:0032561	GO:0006810//transport;GO:0032012//regulation of ARF protein signal transduction	"gi|311273308|ref|XP_003133806.1|/2.09288e-100/PREDICTED: arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1-like [Sus scrofa]"
gnl|UG|Ssc#S55247182	13	3.74	38	10.86	25	7.51	"FS704720 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010100G03 5', mRNA sequence /clone=PST010100G03 /clone_end=5' /gb=FS704720 /gi=288241284 /ug=Ssc.19502 /len=859"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0005515//protein binding	GO:0006950//response to stress;GO:0044267//cellular protein metabolic process	gi|311247405|ref|XP_003122627.1|/3.04793e-113/PREDICTED: dnaJ homolog subfamily C member 4-like [Sus scrofa]
gnl|UG|Ssc#S20938455	0	0	0	0	2	0.6	"AJ650178 CSEQRAN19 Sus scrofa cDNA clone C0003274_K02, mRNA sequence /clone=C0003274_K02 /gb=AJ650178 /gi=49327023 /ug=Ssc.74128 /len=529"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0032589//neuron projection membrane	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding;GO:0003702//RNA polymerase II transcription factor activity	GO:0019752//carboxylic acid metabolic process;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0033554//cellular response to stress;GO:0006006//glucose metabolic process	gi|13242322|ref|NP_077379.1|/1.00373e-94/cyclic AMP-dependent transcription factor ATF-4 [Rattus norvegicus]
gnl|UG|Ssc#S24529493	37	10.65	27	7.72	35	10.52	"Sus scrofa cyclin G1 (CCNG1) mRNA, complete cds /cds=p(213,1100) /gb=AY974246 /gi=62526590 /ug=Ssc.5070 /len=2359"	GO:0043231//intracellular membrane-bounded organelle;GO:0043005//neuron projection;GO:0044297//cell body;GO:0044444//cytoplasmic part	GO:0005515//protein binding	GO:0007417//central nervous system development;GO:0006915//apoptosis;GO:0009719;GO:0040007//growth;GO:0000087//M phase of mitotic cell cycle;GO:0031572//G2/M transition DNA damage checkpoint	gi|72535178|ref|NP_001026951.1|/2.40619e-153/cyclin-G1 [Sus scrofa]
gnl|UG|Ssc#S58307702	2	0.58	2	0.57	8	2.4	"PREDICTED: Sus scrofa Golgin subfamily A member 5-like (LOC100151911), mRNA /cds=p(160,2352) /gb=XM_003128694 /gi=311261482 /ug=Ssc.24709 /len=2740"	GO:0031224//intrinsic to membrane;GO:0030137//COPI-coated vesicle;GO:0031985//Golgi cisterna;GO:0012505//endomembrane system	GO:0005083//small GTPase regulator activity;GO:0004672//protein kinase activity;GO:0042802//identical protein binding;GO:0032559	GO:0006996//organelle organization;GO:0019222//regulation of metabolic process;GO:0006891//intra-Golgi vesicle-mediated transport;GO:0006464//protein modification process	gi|311261483|ref|XP_003128742.1|/0/PREDICTED: LOW QUALITY PROTEIN: Golgin subfamily A member 5-like [Sus scrofa]
gnl|UG|Ssc#S58303793	4	1.15	0	0	4	1.2	"PREDICTED: Sus scrofa disks large homolog 1-like, transcript variant 1 (LOC100524400), mRNA /cds=p(1,2784) /gb=XM_003132603 /gi=311269827 /ug=Ssc.21392 /len=3728"	GO:0043296//apical junction complex;GO:0031090//organelle membrane;GO:0016323//basolateral plasma membrane;GO:0044430//cytoskeletal part;GO:0043231//intracellular membrane-bounded organelle;GO:0042383//sarcolemma;GO:0045202//synapse;GO:0044444//cytoplasmic part;GO:0005624//membrane fraction	"GO:0019900//kinase binding;GO:0016776//phosphotransferase activity, phosphate group as acceptor;GO:0019904//protein domain specific binding;GO:0035254//glutamate receptor binding;GO:0016247//channel regulator activity;GO:0016791//phosphatase activity"	GO:0051704;GO:0007346//regulation of mitotic cell cycle;GO:0000082//G1/S transition of mitotic cell cycle;GO:0048562//embryonic organ morphogenesis;GO:0050673//epithelial cell proliferation;GO:0003006//developmental process involved in reproduction;GO:0007009//plasma membrane organization;GO:0008104//protein localization;GO:0035264//multicellular organism growth;GO:0014821;GO:0045927//positive regulation of growth;GO:0060537//muscle tissue development;GO:0006935//chemotaxis;GO:0006873//cellular ion homeostasis;GO:0002367//cytokine production involved in immune response;GO:0043010//camera-type eye development;GO:0008285//negative regulation of cell proliferation;GO:0007267//cell-cell signaling;GO:0006813//potassium ion transport;GO:0007155//cell adhesion;GO:0007043//cell-cell junction assembly;GO:0048754//branching morphogenesis of a tube;GO:0030041//actin filament polymerization;GO:0042098//T cell proliferation;GO:0045860//positive regulation of protein kinase activity;GO:0009100//glycoprotein metabolic process;GO:0009988//cell-cell recognition	gi|311269828|ref|XP_003132651.1|/0/PREDICTED: disks large homolog 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58306020	0	0	0	0	0	0	"PREDICTED: Sus scrofa protein Niban-like (LOC100516994), mRNA /cds=p(166,2970) /gb=XM_003130377 /gi=311264973 /ug=Ssc.5524 /len=5056"	GO:0031981//nuclear lumen;GO:0016020//membrane	-	GO:0006412//translation;GO:0001932//regulation of protein phosphorylation;GO:0033554//cellular response to stress	gi|311264974|ref|XP_003130425.1|/0/PREDICTED: protein Niban-like [Sus scrofa]
gnl|UG|Ssc#S19542447	0	0	0	0	0	0	"947343 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158543 /gi=46172973 /ug=Ssc.61679 /len=910"	-	-	-	gi|119618671|gb|EAW98265.1|/2.68597e-14/hCG2016453 [Homo sapiens]
gnl|UG|Ssc#S35167156	3	0.86	14	4	4	1.2	"Sus scrofa mRNA, clone:LVRM10026G12, expressed in liver /gb=AK232788 /gi=115552583 /ug=Ssc.12546 /len=2850"	GO:0043232;GO:0044439	"GO:0004175//endopeptidase activity;GO:0042623//ATPase activity, coupled;GO:0003677//DNA binding;GO:0005515//protein binding;GO:0032559"	GO:0006996//organelle organization;GO:0051605//protein maturation by peptide bond cleavage;GO:0051603//proteolysis involved in cellular protein catabolic process;GO:0006605//protein targeting;GO:0009207;GO:0010033//response to organic substance	gi|73949875|ref|XP_535313.2|/0/PREDICTED: similar to peroxisomal lon protease isoform 2 [Canis familiaris]
gnl|UG|Ssc#S18290609	19	5.47	9	2.57	15	4.51	"BP142334 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVR010018C06 5', mRNA sequence /clone=OVR010018C06 /clone_end=5' /gb=BP142334 /gi=40391805 /ug=Ssc.20120 /len=900"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation	"gi|73958588|ref|XP_536923.2|/2.69227e-123/PREDICTED: similar to eukaryotic translation initiation factor 3, subunit 8, 110kDa [Canis familiaris]"
gnl|UG|Ssc#S55324709	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:ADR010044F08, expressed in adrenal gland /gb=AK343347 /gi=288780163 /ug=Ssc.4516 /len=2414"	GO:0031981//nuclear lumen	GO:0003729//mRNA binding;GO:0005515//protein binding	GO:0048255//mRNA stabilization;GO:0032501//multicellular organismal process	"gi|119589356|gb|EAW68950.1|/0/ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R), isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S35168585	20	5.76	11	3.14	12	3.61	"Sus scrofa mRNA, clone:LVR010065A04, expressed in liver /gb=AK232538 /gi=115551105 /ug=Ssc.23772 /len=3084"	GO:0005759//mitochondrial matrix	"GO:0003723//RNA binding;GO:0004175//endopeptidase activity;GO:0010843//promoter binding;GO:0042623//ATPase activity, coupled;GO:0019899//enzyme binding;GO:0032559;GO:0043566//structure-specific DNA binding"	GO:0006979//response to oxidative stress;GO:0051259//protein oligomerization;GO:0019941//modification-dependent protein catabolic process;GO:0000002//mitochondrial genome maintenance;GO:0051131//chaperone-mediated protein complex assembly	"gi|311248444|ref|XP_003123131.1|/0/PREDICTED: lon protease homolog, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58301225	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa neuroligin 3, transcript variant 3 (NLGN3), mRNA /cds=p(41,2587) /gb=XM_003135170 /gi=311276464 /ug=Ssc.33202 /len=2587"	GO:0016021//integral to membrane;GO:0016023//cytoplasmic membrane-bounded vesicle	GO:0005488//binding;GO:0004871//signal transducer activity	GO:0043062//extracellular structure organization;GO:0016337//cell-cell adhesion;GO:0044089//positive regulation of cellular component biogenesis;GO:0051969;GO:0007632//visual behavior;GO:0007399//nervous system development;GO:0051705;GO:0060078//regulation of postsynaptic membrane potential;GO:0006897//endocytosis	gi|50510949|dbj|BAD32460.1|/0/mKIAA1480 protein [Mus musculus]
gnl|UG|Ssc#S46879041	13	3.74	11	3.14	28	8.41	"PREDICTED: Sus scrofa TNF receptor-associated factor 3-like (LOC100156979), mRNA /cds=p(157,1875) /gb=XM_001927400 /gi=311261587 /ug=Ssc.63896 /len=1875"	GO:0043231//intracellular membrane-bounded organelle;GO:0005887//integral to plasma membrane;GO:0044444//cytoplasmic part	GO:0004871//signal transducer activity;GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity;GO:0019900//kinase binding	GO:0001818//negative regulation of cytokine production;GO:0002697;GO:0043433//negative regulation of transcription factor activity;GO:0019221//cytokine-mediated signaling pathway;GO:0032479;GO:0006915//apoptosis;GO:0012502//induction of programmed cell death;GO:0032446//protein modification by small protein conjugation;GO:0002221//pattern recognition receptor signaling pathway;GO:0006508//proteolysis	gi|311261588|ref|XP_001927435.2|/0/PREDICTED: TNF receptor-associated factor 3-like [Sus scrofa]
gnl|UG|Ssc#S35166610	5	1.44	2	0.57	11	3.31	"Sus scrofa mRNA, clone:THY010125D03, expressed in thymus /gb=AK239715 /gi=115553129 /ug=Ssc.8359 /len=1353"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0051704	gi|194379756|dbj|BAG58230.1|/2.86872e-22/unnamed protein product [Homo sapiens]
gnl|UG|Ssc#S35174157	6	1.73	0	0	3	0.9	"Sus scrofa mRNA, clone:AMP010044E06, expressed in alveolar macrophage /gb=AK230793 /gi=115545678 /ug=Ssc.30520 /len=1702"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|296488500|gb|DAA30613.1|/0/zinc finger protein (C2H2 type) 277 [Bos taurus]
gnl|UG|Ssc#S55327501	692	199.23	1093	312.43	395	118.71	"Sus scrofa mRNA, clone:MLTL10029H10, expressed in longissimus /gb=AK347148 /gi=288576553 /ug=Ssc.19546 /len=785"	GO:0016020//membrane;GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0042598//vesicular fraction	"GO:0032561;GO:0046872//metal ion binding;GO:0032559;GO:0015631//tubulin binding;GO:0004518//nuclease activity;GO:0016776//phosphotransferase activity, phosphate group as acceptor"	GO:0009209//pyrimidine ribonucleoside triphosphate biosynthetic process;GO:0051099//positive regulation of binding;GO:0007589//body fluid secretion;GO:0002573//myeloid leukocyte differentiation;GO:0010033//response to organic substance;GO:0048732//gland development;GO:0006796//phosphate metabolic process;GO:0016192//vesicle-mediated transport;GO:0008284//positive regulation of cell proliferation;GO:0006915//apoptosis;GO:0009206;GO:0009132//nucleoside diphosphate metabolic process	gi|296202443|ref|XP_002748462.1|/1.69744e-80/PREDICTED: nucleoside diphosphate kinase A-like [Callithrix jacchus]
gnl|UG|Ssc#S55324732	2	0.58	0	0	8	2.4	"Sus scrofa mRNA, clone:ADR010036E08, expressed in adrenal gland /gb=AK343324 /gi=288780140 /ug=Ssc.28846 /len=1931"	GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity	"GO:0006351//transcription, DNA-dependent"	gi|296490022|gb|DAA32135.1|/0/glucocorticoid modulatory element-binding protein 1 [Bos taurus]
gnl|UG|Ssc#S35173985	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:OVR010039A08, expressed in ovary /gb=AK234283 /gi=115545850 /ug=Ssc.2985 /len=1213"	-	-	-	-
gnl|UG|Ssc#S46880593	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa MGC142736 protein (LOC100154984), mRNA /cds=p(41,1723) /gb=XM_001929220 /gi=311244912 /ug=Ssc.30235 /len=2944"	GO:0031224//intrinsic to membrane	-	-	gi|311244913|ref|XP_001929255.2|/0/PREDICTED: transmembrane protein 87A [Sus scrofa]
gnl|UG|Ssc#S52128921	10	2.88	4	1.14	6	1.8	"Sus scrofa v-akt murine thymoma viral oncogene homolog 1 (AKT1), mRNA /cds=p(39,1481) /gb=NM_001159776 /gi=229576868 /ug=Ssc.75056 /len=1518"	GO:0031981//nuclear lumen;GO:0016020//membrane;GO:0015630//microtubule cytoskeleton;GO:0000267//cell fraction;GO:0031252//cell leading edge;GO:0044444//cytoplasmic part	GO:0019901//protein kinase binding;GO:0032559;GO:0030234//enzyme regulator activity;GO:0004672//protein kinase activity;GO:0035091//phosphatidylinositol binding	GO:0001934//positive regulation of protein phosphorylation;GO:0032868//response to insulin stimulus;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0031667//response to nutrient levels;GO:0031175//neuron projection development;GO:0048017//inositol lipid-mediated signaling;GO:0006916//anti-apoptosis;GO:0001503//ossification;GO:0060706//cell differentiation involved in embryonic placenta development;GO:0043029//T cell homeostasis;GO:0042692//muscle cell differentiation;GO:0043409//negative regulation of MAPKKK cascade;GO:0006917//induction of apoptosis;GO:0033673//negative regulation of kinase activity;GO:0045597//positive regulation of cell differentiation;GO:0006952//defense response;GO:0031331;GO:0003006//developmental process involved in reproduction;GO:0031016//pancreas development;GO:0033500//carbohydrate homeostasis;GO:0010595//positive regulation of endothelial cell migration;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0008610//lipid biosynthetic process;GO:0031657;GO:0002028//regulation of sodium ion transport;GO:0032446//protein modification by small protein conjugation;GO:0010828//positive regulation of glucose transport;GO:0006635//fatty acid beta-oxidation;GO:0007155//cell adhesion;GO:0032770//positive regulation of monooxygenase activity;GO:0022405//hair cycle process;GO:0010746;GO:0006412//translation;GO:0009411//response to UV;GO:0016049//cell growth;GO:0043388//positive regulation of DNA binding;GO:0006606//protein import into nucleus;GO:0070848//response to growth factor stimulus;GO:0031328//positive regulation of cellular biosynthetic process;GO:0005979//regulation of glycogen biosynthetic process;GO:0031294;GO:0009057//macromolecule catabolic process;GO:0007599//hemostasis;GO:0044271//cellular nitrogen compound biosynthetic process	gi|229576869|ref|NP_001153248.1|/0/RAC-alpha serine/threonine-protein kinase [Sus scrofa]
gnl|UG|Ssc#S58304618	12	3.45	3	0.86	12	3.61	"PREDICTED: Sus scrofa flotillin-2-like (LOC100518752), mRNA /cds=p(1,1620) /gb=XM_003131793 /gi=311267974 /ug=Ssc.21920 /len=2855"	GO:0005901//caveola;GO:0043231//intracellular membrane-bounded organelle;GO:0005626//insoluble fraction	GO:0035254//glutamate receptor binding	GO:0009888//tissue development;GO:0009987//cellular process	gi|311267975|ref|XP_003131841.1|/0/PREDICTED: flotillin-2-like [Sus scrofa]
gnl|UG|Ssc#S46877768	6	1.73	4	1.14	5	1.5	"PREDICTED: Sus scrofa CLN5 (LOC100152208), mRNA /cds=p(1,1914) /gb=XM_001926132 /gi=311266399 /ug=Ssc.2893 /len=3647"	-	-	-	gi|311266400|ref|XP_001926167.2|/0/PREDICTED: ceroid-lipofuscinosis neuronal protein 5 [Sus scrofa]
gnl|UG|Ssc#S35174217	8	2.3	0	0	4	1.2	"Sus scrofa mRNA, clone:AMP010033E09, expressed in alveolar macrophage /gb=AK230733 /gi=115545618 /ug=Ssc.78626 /len=3419"	GO:0044464//cell part	-	-	gi|74006213|ref|XP_536151.2|/0/PREDICTED: similar to B0507.2 [Canis familiaris]
gnl|UG|Ssc#S46876768	15	4.32	0	0	8	2.4	"PREDICTED: Sus scrofa N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 (NDST2), mRNA /cds=p(1,2652) /gb=XM_001928374 /gi=311271396 /ug=Ssc.35055 /len=3168"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0034483//heparan sulfate sulfotransferase activity	GO:0030166//proteoglycan biosynthetic process;GO:0006023	gi|194042822|ref|XP_001928409.1|/0/PREDICTED: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like [Sus scrofa]
gnl|UG|Ssc#S46878973	0	0	0	0	0	0	"PREDICTED: Sus scrofa tetratricopeptide repeat domain 7B (TTC7B), mRNA /cds=p(1,1206) /gb=XM_001925933 /gi=311261445 /ug=Ssc.24557 /len=1273"	-	-	-	gi|311261446|ref|XP_001925968.2|/0/PREDICTED: tetratricopeptide repeat protein 7B [Sus scrofa]
gnl|UG|Ssc#S40834168	53	15.26	18	5.15	51	15.33	"Sus scrofa RAE1 RNA export 1 homolog (S. pombe) (RAE1), mRNA /cds=p(379,1485) /gb=NM_001105296 /gi=157427747 /ug=Ssc.2778 /len=1844"	GO:0031965//nuclear membrane;GO:0043232	GO:0003676//nucleic acid binding;GO:0015631//tubulin binding	GO:0044238//primary metabolic process;GO:0015758//glucose transport;GO:0006405//RNA export from nucleus;GO:0014070//response to organic cyclic compound	gi|157427748|ref|NP_001098766.1|/0/mRNA export factor [Sus scrofa]
gnl|UG|Ssc#S21696052	6	1.73	5	1.43	0	0	"Sus scrofa testicular activin receptor IIB mRNA, complete cds /cds=p(13,1551) /gb=AY705387 /gi=51573920 /ug=Ssc.42773 /len=1563"	GO:0016021//integral to membrane;GO:0044424//intracellular part	GO:0019838//growth factor binding;GO:0034711;GO:0032559;GO:0043169//cation binding;GO:0017002//activin receptor activity;GO:0032403//protein complex binding	GO:0000003//reproduction;GO:0007369//gastrulation;GO:0040007//growth;GO:0045597//positive regulation of cell differentiation;GO:0042476//odontogenesis;GO:0009855//determination of bilateral symmetry;GO:0003002//regionalization;GO:0030282//bone mineralization;GO:0030323//respiratory tube development;GO:0045860//positive regulation of protein kinase activity;GO:0030072//peptide hormone secretion;GO:0009746;GO:0032924//activin receptor signaling pathway	gi|52694691|ref|NP_001005350.1|/0/activin receptor type-2B precursor [Sus scrofa]
gnl|UG|Ssc#S18261737	0	0	0	0	5	1.5	"BP158228 full-length enriched swine cDNA library, adult spleen Sus scrofa cDNA clone SPL010014E08 5', mRNA sequence /clone=SPL010014E08 /clone_end=5' /gb=BP158228 /gi=40407701 /ug=Ssc.75866 /len=816"	-	-	-	"gi|148700105|gb|EDL32052.1|/3.56824e-68/hect domain and RLD 4, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S14900840	0	0	3	0.86	0	0	"jns53_G02.f jns Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CB479688 /gi=29286074 /ug=Ssc.75753 /len=651"	-	-	-	gi|149726551|ref|XP_001504743.1|/3.52343e-101/PREDICTED: similar to FCH domain only protein 2 [Equus caballus]
gnl|UG|Ssc#S40475930	28	8.06	40	11.43	21	6.31	"rspc006_k23.y1 spc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW570536 /gi=183035807 /ug=Ssc.3330 /len=599"	-	-	-	-
gnl|UG|Ssc#S35171352	4	1.15	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10050C09, expressed in ovary /gb=AK235104 /gi=115548487 /ug=Ssc.32857 /len=1951"	-	-	-	-
gnl|UG|Ssc#S20936204	2125	611.8	3111	889.28	1076	323.37	"AJ647927 CSEQRAN19 Sus scrofa cDNA clone C0003263_B12, mRNA sequence /clone=C0003263_B12 /gb=AJ647927 /gi=49324772 /ug=Ssc.85508 /len=452"	"GO:0033178//proton-transporting two-sector ATPase complex, catalytic domain;GO:0005759//mitochondrial matrix;GO:0005743//mitochondrial inner membrane"	"GO:0042287//MHC protein binding;GO:0019829//cation-transporting ATPase activity;GO:0015078//hydrogen ion transmembrane transporter activity;GO:0032559;GO:0043498//cell surface binding;GO:0015662//ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"	"GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0006929//substrate-dependent cell migration;GO:0009207;GO:0006754//ATP biosynthetic process;GO:0030641//regulation of cellular pH;GO:0048646//anatomical structure formation involved in morphogenesis"	"gi|306991567|pdb|2XND|D/2.5412e-79/Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase"
gnl|UG|Ssc#S46878798	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa uncharacterized protein KIAA1737 homolog (LOC100157174), mRNA /cds=p(247,1446) /gb=XM_001926009 /gi=311261373 /ug=Ssc.72891 /len=1446"	-	-	-	gi|194038607|ref|XP_001926044.1|/0/PREDICTED: uncharacterized protein KIAA1737 homolog [Sus scrofa]
gnl|UG|Ssc#S55323145	5	1.44	3	0.86	16	4.81	"Sus scrofa mRNA, clone:BKFL10059A12, expressed in back fat /gb=AK344137 /gi=288781727 /ug=Ssc.60506 /len=2017"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0046527//glucosyltransferase activity	GO:0006487//protein N-linked glycosylation	"gi|311259223|ref|XP_003127995.1|/0/PREDICTED: dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase-like [Sus scrofa]"
gnl|UG|Ssc#S46880618	3	0.86	3	0.86	9	2.7	"PREDICTED: Sus scrofa SH2 domain-containing adapter protein F-like (LOC100157418), mRNA /cds=p(10,1335) /gb=XM_001925071 /gi=311244812 /ug=Ssc.29408 /len=2065"	-	-	-	gi|311244813|ref|XP_001925106.2|/2.77452e-158/PREDICTED: SH2 domain-containing adapter protein F-like [Sus scrofa]
gnl|UG|Ssc#S55323570	4	1.15	0	0	2	0.6	"Sus scrofa mRNA, clone:AMP010080D05, expressed in alveolar macrophages /gb=AK343911 /gi=288781302 /ug=Ssc.26609 /len=3306"	GO:0005856//cytoskeleton	GO:0003676//nucleic acid binding;GO:0043169//cation binding	-	gi|311262358|ref|XP_003129132.1|/6.69838e-128/PREDICTED: THAP domain-containing protein 6-like [Sus scrofa]
gnl|UG|Ssc#S35164752	11	3.17	19	5.43	10	3.01	"Sus scrofa mRNA, clone:UTR010038A02, expressed in uterus /gb=AK240173 /gi=115554974 /ug=Ssc.30985 /len=2310"	-	-	-	-
gnl|UG|Ssc#S46875805	63	18.14	91	26.01	55	16.53	"PREDICTED: Sus scrofa peroxiredoxin 4 (PRDX4), mRNA /cds=p(163,981) /gb=XM_001927369 /gi=194044821 /ug=Ssc.29335 /len=1049"	GO:0044421//extracellular region part;GO:0043231//intracellular membrane-bounded organelle	"GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;GO:0004601//peroxidase activity"	GO:0006468//protein phosphorylation;GO:0019725//cellular homeostasis	gi|194044822|ref|XP_001927404.1|/1.86918e-137/PREDICTED: peroxiredoxin-4 [Sus scrofa]
gnl|UG|Ssc#S26722459	120	34.55	66	18.87	159	47.78	"AJ958543 KN404_2 Sus scrofa cDNA clone C0007760e19 5', mRNA sequence /clone=C0007760e19 /clone_end=5' /gb=AJ958543 /gi=74375359 /ug=Ssc.1151 /len=694"	-	-	-	-
gnl|UG|Ssc#S18551681	44	12.67	6	1.72	52	15.63	"BX920332 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0005d.l.18 5prim, mRNA sequence /clone=scan0005.l.18 /clone_end=5' /gb=BX920332 /gi=41137180 /ug=Ssc.3988 /len=808"	-	-	-	gi|297296277|ref|XP_002804789.1|/1.3793e-09/PREDICTED: hypothetical protein LOC100430187 [Macaca mulatta]
gnl|UG|Ssc#S55323474	4	1.15	0	0	0	0	"Sus scrofa mRNA, clone:BFLT10030B01, expressed in brain (frontal lobe) /gb=AK344007 /gi=288781398 /ug=Ssc.19095 /len=1066"	GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity	GO:0023052//signaling	gi|24041026|ref|NP_060562.3|/0/neuropilin and tolloid-like protein 2 isoform 1 precursor [Homo sapiens]
gnl|UG|Ssc#S18378831	0	0	2	0.57	0	0	"923377 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK458940 /gi=40830221 /ug=Ssc.84644 /len=850"	GO:0009986//cell surface;GO:0043235//receptor complex;GO:0005887//integral to plasma membrane;GO:0044421//extracellular region part	GO:0004897//ciliary neurotrophic factor receptor activity;GO:0005126//cytokine receptor binding;GO:0042802//identical protein binding;GO:0019838//growth factor binding	GO:0045767//regulation of anti-apoptosis;GO:0042508//tyrosine phosphorylation of Stat1 protein;GO:0045687//positive regulation of glial cell differentiation;GO:0002250//adaptive immune response;GO:0009605//response to external stimulus;GO:0003300//cardiac muscle hypertrophy;GO:0007219//Notch signaling pathway;GO:0001819//positive regulation of cytokine production;GO:0002526//acute inflammatory response;GO:0006073//cellular glucan metabolic process;GO:0001960//negative regulation of cytokine-mediated signaling pathway;GO:0007167//enzyme linked receptor protein signaling pathway;GO:0042098//T cell proliferation;GO:0042503//tyrosine phosphorylation of Stat3 protein	gi|148232174|ref|NP_001090901.1|/6.24913e-103/interleukin-6 receptor subunit beta [Sus scrofa]
gnl|UG|Ssc#S58311875	6	1.73	2	0.57	7	2.1	"PREDICTED: Sus scrofa exportin 6 (XPO6), mRNA /cds=p(201,3578) /gb=XM_003124525 /gi=311251358 /ug=Ssc.13610 /len=3865"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0022892	GO:0006605//protein targeting	gi|311251359|ref|XP_003124573.1|/0/PREDICTED: exportin-6-like [Sus scrofa]
gnl|UG|Ssc#S35170146	6	1.73	5	1.43	0	0	"Sus scrofa mRNA, clone:LNG010059B06, expressed in lung /gb=AK231972 /gi=115549693 /ug=Ssc.13173 /len=1526"	-	GO:0008047//enzyme activator activity	-	gi|88319933|ref|NP_777091.2|/4.5087e-160/rap1 GTPase-GDP dissociation stimulator 1 [Bos taurus]
gnl|UG|Ssc#S58309814	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa ELKS/RAB6-interacting/CAST family member 1, transcript variant 2 (ERC1), mRNA /cds=p(1,3351) /gb=XM_003126581 /gi=311256394 /ug=Ssc.26683 /len=3494"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0012505//endomembrane system;GO:0016020//membrane	GO:0005083//small GTPase regulator activity;GO:0030275//LRR domain binding	GO:0045767//regulation of anti-apoptosis;GO:0006468//protein phosphorylation;GO:0051091//positive regulation of transcription factor activity;GO:0032501//multicellular organismal process;GO:0016197//endosome transport	gi|311256395|ref|XP_003126629.1|/0/PREDICTED: ELKS/Rab6-interacting/CAST family member 1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58302575	8	2.3	11	3.14	9	2.7	"PREDICTED: Sus scrofa pleckstrin homology domain-containing family B member 2-like (LOC100514609), mRNA /cds=p(56,370) /gb=XM_003133821 /gi=311273442 /ug=Ssc.57057 /len=2939"	-	-	-	"gi|149046403|gb|EDL99296.1|/1.06434e-36/pleckstrin homology domain containing, family B (evectins) member 2 (predicted), isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S58306686	60	17.27	48	13.72	79	23.74	"PREDICTED: Sus scrofa PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) (PCF11), mRNA /cds=p(309,4778) /gb=XM_003129708 /gi=311263612 /ug=Ssc.10194 /len=5675"	GO:0043234//protein complex;GO:0031981//nuclear lumen	-	"GO:0000377;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	gi|311263613|ref|XP_003129756.1|/0/PREDICTED: pre-mRNA cleavage complex 2 protein Pcf11-like [Sus scrofa]
gnl|UG|Ssc#S35171913	26	7.49	26	7.43	20	6.01	"Sus scrofa mRNA, clone:OVRM10028C07, expressed in ovary /gb=AK234899 /gi=115547922 /ug=Ssc.26701 /len=2765"	GO:0005681//spliceosomal complex	GO:0046914//transition metal ion binding	GO:0000377	"gi|297747306|ref|NP_001177083.1|/0/zinc finger, CCHC domain containing 8 [Sus scrofa]"
gnl|UG|Ssc#S55266901	2	0.58	10	2.86	4	1.2	"FS669346 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10072F08 5', mRNA sequence /clone=HTMT10072F08 /clone_end=5' /gb=FS669346 /gi=288265198 /ug=Ssc.15231 /len=712"	-	-	-	-
gnl|UG|Ssc#S58311220	4	1.15	0	0	5	1.5	"PREDICTED: Sus scrofa protein phosphatase 1B-like (LOC100511191), mRNA /cds=p(1,1440) /gb=XM_003125179 /gi=311252707 /ug=Ssc.13719 /len=2189"	GO:0043234//protein complex	GO:0046914//transition metal ion binding;GO:0004721//phosphoprotein phosphatase activity	GO:0006464//protein modification process	gi|311252708|ref|XP_003125227.1|/0/PREDICTED: LOW QUALITY PROTEIN: protein phosphatase 1B-like [Sus scrofa]
gnl|UG|Ssc#S18381720	2	0.58	0	0	0	0	"932590 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK461836 /gi=40833117 /ug=Ssc.24654 /len=878"	-	-	-	-
gnl|UG|Ssc#S58304129	221	63.63	226	64.6	258	77.54	"PREDICTED: Sus scrofa sarcolemma associated protein (SLMAP), mRNA /cds=p(477,2804) /gb=XM_003132268 /gi=311269044 /ug=Ssc.1655 /len=4592"	GO:0044421//extracellular region part;GO:0043234//protein complex;GO:0005886//plasma membrane;GO:0016021//integral to membrane;GO:0005783//endoplasmic reticulum;GO:0015630//microtubule cytoskeleton	GO:0005515//protein binding	GO:0003012//muscle system process;GO:0044267//cellular protein metabolic process	gi|311269045|ref|XP_003132316.1|/0/PREDICTED: sarcolemmal membrane-associated protein-like [Sus scrofa]
gnl|UG|Ssc#S20939560	0	0	0	0	0	0	"AJ651283 CSEQRAN19 Sus scrofa cDNA clone C0003277_O03, mRNA sequence /clone=C0003277_O03 /gb=AJ651283 /gi=49333728 /ug=Ssc.85697 /len=527"	GO:0022624	GO:0061135	"GO:0019882//antigen processing and presentation;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	"gi|149063974|gb|EDM14244.1|/5.28892e-84/proteasome (prosome, macropain) 28 subunit, beta, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S17525668	3	0.86	2	0.57	2	0.6	"BX674809 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0041.m.20 5prim, mRNA sequence /clone=scac0041.m.20 /clone_end=5' /gb=BX674809 /gi=90226799 /ug=Ssc.94305 /len=807"	GO:0005583//fibrillar collagen	GO:0001948//glycoprotein binding;GO:0005102//receptor binding;GO:0005539//glycosaminoglycan binding;GO:0019838//growth factor binding;GO:0005198//structural molecule activity	GO:0050789//regulation of biological process;GO:0006935//chemotaxis;GO:0008544//epidermis development;GO:0009887//organ morphogenesis;GO:0009059//macromolecule biosynthetic process;GO:0001944//vasculature development;GO:0044319;GO:0030198//extracellular matrix organization	gi|62461592|ref|NP_001014971.1|/1.37409e-88/collagen alpha-1(V) chain [Sus scrofa]
gnl|UG|Ssc#S58305800	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa receptor-type tyrosine-protein phosphatase C-like (LOC100522631), mRNA /cds=p(30,2096) /gb=XM_003130596 /gi=311265420 /ug=Ssc.18617 /len=3260"	GO:0016021//integral to membrane;GO:0005924//cell-substrate adherens junction	GO:0019900//kinase binding;GO:0004725//protein tyrosine phosphatase activity	GO:0030098//lymphocyte differentiation;GO:0033673//negative regulation of kinase activity;GO:0050851//antigen receptor-mediated signaling pathway;GO:0006464//protein modification process;GO:0033674//positive regulation of kinase activity;GO:0006935//chemotaxis;GO:0010212//response to ionizing radiation;GO:0002377//immunoglobulin production;GO:0001911;GO:0030888//regulation of B cell proliferation;GO:0001959//regulation of cytokine-mediated signaling pathway;GO:0051283;GO:0010564//regulation of cell cycle process;GO:0042098//T cell proliferation	gi|311265421|ref|XP_003130644.1|/0/PREDICTED: receptor-type tyrosine-protein phosphatase C-like [Sus scrofa]
gnl|UG|Ssc#S58308396	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa epidermal growth factor receptor substrate 15-like (LOC100518076), mRNA /cds=p(1,3051) /gb=XM_003127993 /gi=311259337 /ug=Ssc.4310 /len=5537"	GO:0005769//early endosome;GO:0030128//clathrin coat of endocytic vesicle	GO:0004871//signal transducer activity;GO:0046872//metal ion binding;GO:0019904//protein domain specific binding	GO:0006901//vesicle coating;GO:0016197//endosome transport;GO:0007173//epidermal growth factor receptor signaling pathway	gi|311259338|ref|XP_003128041.1|/0/PREDICTED: epidermal growth factor receptor substrate 15-like [Sus scrofa]
gnl|UG|Ssc#S20936156	1000	287.9	671	191.8	755	226.9	"AJ647879 CSEQRAN19 Sus scrofa cDNA clone C0003260_P04, mRNA sequence /clone=C0003260_P04 /gb=AJ647879 /gi=49324724 /ug=Ssc.85535 /len=557"	GO:0015629//actin cytoskeleton	GO:0008092//cytoskeletal protein binding;GO:0005198//structural molecule activity	GO:0008064//regulation of actin polymerization or depolymerization	gi|9506405|ref|NP_062162.1|/1.47315e-53/actin-related protein 2/3 complex subunit 1B [Rattus norvegicus]
gnl|UG|Ssc#S20939182	3	0.86	12	3.43	0	0	"AJ650905 CSEQRAN19 Sus scrofa cDNA clone C0003276_K18, mRNA sequence /clone=C0003276_K18 /gb=AJ650905 /gi=49327750 /ug=Ssc.85675 /len=528"	GO:0043234//protein complex;GO:0005768//endosome	"GO:0016705//oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;GO:0016757//transferase activity, transferring glycosyl groups;GO:0016209//antioxidant activity;GO:0004869//cysteine-type endopeptidase inhibitor activity;GO:0016668//oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor;GO:0019900//kinase binding"	"GO:0030097//hemopoiesis;GO:0043549//regulation of kinase activity;GO:0055086//nucleobase, nucleoside and nucleotide metabolic process;GO:0042743//hydrogen peroxide metabolic process;GO:0008283//cell proliferation;GO:0051091//positive regulation of transcription factor activity;GO:0001890//placenta development;GO:0000302//response to reactive oxygen species;GO:0006996//organelle organization;GO:0002237//response to molecule of bacterial origin;GO:0042391//regulation of membrane potential;GO:0043066//negative regulation of apoptosis;GO:0010466//negative regulation of peptidase activity"	gi|149040547|gb|EDL94585.1|/3.2519e-97/peroxiredoxin 3 [Rattus norvegicus]
gnl|UG|Ssc#S46878853	148	42.61	502	143.5	168	50.49	"PREDICTED: Sus scrofa serine/arginine-rich splicing factor 5, transcript variant 1 (SRSF5), mRNA /cds=p(269,1084) /gb=XM_001927419 /gi=311261269 /ug=Ssc.8738 /len=1637"	GO:0016604//nuclear body	GO:0003676//nucleic acid binding;GO:0019904//protein domain specific binding	"GO:0007049//cell cycle;GO:0000245//spliceosome assembly;GO:0006405//RNA export from nucleus;GO:0006353//transcription termination, DNA-dependent;GO:0006950//response to stress"	"gi|291410875|ref|XP_002721708.1|/2.43764e-74/PREDICTED: splicing factor, arginine/serine-rich 5 [Oryctolagus cuniculus]"
gnl|UG|Ssc#S58307766	0	0	7	2	9	2.7	"PREDICTED: Sus scrofa DNA repair protein RAD51 homolog 2-like (LOC100519785), mRNA /cds=p(55,1251) /gb=XM_003128647 /gi=311261251 /ug=Ssc.18751 /len=1430"	GO:0031981//nuclear lumen	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0006310//DNA recombination;GO:0033554//cellular response to stress;GO:0009207;GO:0007599//hemostasis	gi|311261252|ref|XP_003128695.1|/0/PREDICTED: DNA repair protein RAD51 homolog 2-like [Sus scrofa]
gnl|UG|Ssc#S17513940	36	10.36	17	4.86	29	8.72	"BX668509 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0029.h.05 5prim, mRNA sequence /clone=scac0029.h.05 /clone_end=5' /gb=BX668509 /gi=90246503 /ug=Ssc.44165 /len=993"	GO:0031981//nuclear lumen	GO:0008649//rRNA methyltransferase activity;GO:0003723//RNA binding	GO:0000154//rRNA modification	gi|274315725|ref|NP_001039662.2|/6.82102e-126/ribosome biogenesis protein NEP1 [Bos taurus]
gnl|UG|Ssc#S34503665	2	0.58	3	0.86	0	0	"DB818634 full-length enriched swine cDNA library, adult thymus Sus scrofa cDNA 3', mRNA sequence /clone=THY010052F09 /clone_end=3' /gb=DB818634 /gi=112771560 /ug=Ssc.89696 /len=722"	-	-	-	-
gnl|UG|Ssc#S18549468	208	59.88	178	50.88	74	22.24	"BX918119 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0036.d.14 5prim, mRNA sequence /clone=scan0036.d.14 /clone_end=5' /gb=BX918119 /gi=90228810 /ug=Ssc.55255 /len=873"	-	GO:0046914//transition metal ion binding	-	gi|194209673|ref|XP_001495621.2|/1.07011e-122/PREDICTED: similar to PHD finger protein 14 [Equus caballus]
gnl|UG|Ssc#S58311255	38	10.94	8	2.29	20	6.01	"PREDICTED: Sus scrofa proteasome activator complex subunit 4-like (LOC100517820), partial mRNA /cds=p(1,5962) /gb=XM_003125150 /gi=311252636 /ug=Ssc.16455 /len=6692"	-	-	-	-
gnl|UG|Ssc#S46878370	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa isocitrate dehydrogenase 3 (NAD+) alpha (IDH3A), mRNA /cds=p(1,1314) /gb=XM_001927338 /gi=311260601 /ug=Ssc.5389 /len=2776"	GO:0030062//mitochondrial tricarboxylic acid cycle enzyme complex	GO:0046872//metal ion binding;GO:0004448//isocitrate dehydrogenase activity;GO:0000166//nucleotide binding	GO:0043648//dicarboxylic acid metabolic process;GO:0019674//NAD metabolic process;GO:0009060//aerobic respiration	"gi|311260602|ref|XP_001927373.2|/0/PREDICTED: isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S55322813	2	0.58	3	0.86	0	0	"Sus scrofa mRNA, clone:TCH010018F05, expressed in trachea /gb=AK350730 /gi=288782059 /ug=Ssc.78419 /len=1271"	-	-	-	gi|66734174|gb|AAY53484.1|/1.68971e-24/endonuclease reverse transcriptase [Bos taurus]
gnl|UG|Ssc#S58304563	9	2.59	3	0.86	9	2.7	"PREDICTED: Sus scrofa small G protein signaling modulator 2, transcript variant 1 (SGSM2), mRNA /cds=p(69,3224) /gb=XM_003131834 /gi=311268086 /ug=Ssc.29574 /len=3427"	GO:0044464//cell part	GO:0005099//Ras GTPase activator activity	GO:0032313//regulation of Rab GTPase activity	gi|311268087|ref|XP_003131882.1|/0/PREDICTED: small G protein signaling modulator 2-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S6666220	3	0.86	0	0	0	0	"MPL384_1_K21 MPL Sus scrofa cDNA clone pSPORT1 5', mRNA sequence /clone=pSPORT1 /clone_end=5' /gb=CA779721 /gi=26017689 /ug=Ssc.29374 /len=411"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0012505//endomembrane system	"GO:0003676//nucleic acid binding;GO:0016763//transferase activity, transferring pentosyl groups;GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0000166//nucleotide binding"	"GO:0040008//regulation of growth;GO:0006281//DNA repair;GO:0032868//response to insulin stimulus;GO:0006351//transcription, DNA-dependent;GO:0016485//protein processing;GO:0006464//protein modification process"	gi|296479253|gb|DAA21368.1|/1.63437e-46/poly [ADP-ribose] polymerase 1 [Bos taurus]
gnl|UG|Ssc#S23692129	22	6.33	20	5.72	41	12.32	"1098341 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN103228 /gi=59776004 /ug=Ssc.84609 /len=872"	-	-	-	-
gnl|UG|Ssc#S35167340	229	65.93	139	39.73	147	44.18	"Sus scrofa mRNA, clone:OVRM10189A09, expressed in ovary /gb=AK236404 /gi=115552399 /ug=Ssc.44825 /len=1790"	-	-	-	gi|301776627|ref|XP_002923730.1|/1.97475e-32/PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58302476	301	86.66	173	49.45	134	40.27	"PREDICTED: Sus scrofa hydroxymethylglutaryl-CoA synthase, cytoplasmic-like (LOC100524223), mRNA /cds=p(124,1686) /gb=XM_003133919 /gi=311273647 /ug=Ssc.11126 /len=5271"	GO:0044444//cytoplasmic part;GO:0000267//cell fraction	"GO:0046912//transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;GO:0042802//identical protein binding"	GO:0009642//response to light intensity;GO:0007417//central nervous system development;GO:0010038//response to metal ion;GO:0051789//response to protein stimulus;GO:0033273//response to vitamin;GO:0032354//response to follicle-stimulating hormone stimulus;GO:0014070//response to organic cyclic compound;GO:0006720//isoprenoid metabolic process;GO:0006694//steroid biosynthetic process;GO:0070723//response to cholesterol;GO:0008406//gonad development;GO:0008203//cholesterol metabolic process	gi|73587185|gb|AAI02851.1|/0/HMGCS1 protein [Bos taurus]
gnl|UG|Ssc#S46875775	10	2.88	4	1.14	13	3.91	"PREDICTED: Sus scrofa proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 (PSMD10), mRNA /cds=p(32,712) /gb=XM_001926907 /gi=311276776 /ug=Ssc.8276 /len=1622"	GO:0005856//cytoskeleton;GO:0005838//proteasome regulatory particle;GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	"GO:0006520//cellular amino acid metabolic process;GO:0016049//cell growth;GO:0043248//proteasome assembly;GO:0042994//cytoplasmic sequestering of transcription factor;GO:0043433//negative regulation of transcription factor activity;GO:0051320;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0007050//cell cycle arrest;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0010741;GO:0001836//release of cytochrome c from mitochondria;GO:0031331;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0000079//regulation of cyclin-dependent protein kinase activity"	gi|194044882|ref|XP_001926942.1|/1.75704e-125/PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Sus scrofa]
gnl|UG|Ssc#S46880108	12	3.45	7	2	0	0	"PREDICTED: Sus scrofa interferon activated gene 203, transcript variant 2 (IFI16), mRNA /cds=p(258,1901) /gb=XM_001929217 /gi=194035882 /ug=Ssc.56942 /len=2528"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0043566//structure-specific DNA binding	"GO:0002573//myeloid leukocyte differentiation;GO:0008630//DNA damage response, signal transduction resulting in induction of apoptosis"	gi|194035883|ref|XP_001929252.1|/0/PREDICTED: gamma-interferon-inducible protein 16 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58303628	56	16.12	16	4.57	33	9.92	"PREDICTED: Sus scrofa phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like (LOC100154885), mRNA /cds=p(1,696) /gb=XM_003132772 /gi=311270220 /ug=Ssc.51076 /len=789"	GO:0031090//organelle membrane;GO:0031224//intrinsic to membrane	GO:0008375//acetylglucosaminyltransferase activity	GO:0006506//GPI anchor biosynthetic process	gi|311270221|ref|XP_003132820.1|/2.73772e-94/PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Sus scrofa]
gnl|UG|Ssc#S56660264	31	8.93	9	2.57	3	0.9	"Sus scrofa homeobox A5 (HOXA5), mRNA /cds=p(626,1438) /gb=NM_001195232 /gi=305377065 /ug=Ssc.47987 /len=2020"	GO:0043231//intracellular membrane-bounded organelle	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0001525//angiogenesis;GO:0002069;GO:0033598//mammary gland epithelial cell proliferation;GO:0045638//negative regulation of myeloid cell differentiation;GO:0007267//cell-cell signaling;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0045597//positive regulation of cell differentiation;GO:0010557;GO:0048562//embryonic organ morphogenesis;GO:0060485//mesenchyme development;GO:0060487//lung epithelial cell differentiation;GO:0048870//cell motility;GO:0003002//regionalization;GO:0006915//apoptosis;GO:0048754//branching morphogenesis of a tube;GO:0060536//cartilage morphogenesis;GO:0035270//endocrine system development;GO:0003008	gi|297288644|ref|XP_001092687.2|/2.44126e-159/PREDICTED: homeobox protein Hox-A5-like isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S19540541	2	0.58	2	0.57	0	0	"944046 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN156637 /gi=46171067 /ug=Ssc.22436 /len=848"	-	-	-	-
gnl|UG|Ssc#S58303923	8	2.3	5	1.43	10	3.01	"PREDICTED: Sus scrofa helicase-like transcription factor-like (LOC100152386), mRNA /cds=p(1,1380) /gb=XM_003132477 /gi=311269516 /ug=Ssc.34736 /len=1380"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0017111//nucleoside-triphosphatase activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0032559	"GO:0006355//regulation of transcription, DNA-dependent;GO:0009207;GO:0006325//chromatin organization"	gi|311269517|ref|XP_003132525.1|/0/PREDICTED: helicase-like transcription factor-like [Sus scrofa]
gnl|UG|Ssc#S55325557	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:PCT010030D03, expressed in placenta /gb=AK349094 /gi=288779269 /ug=Ssc.24669 /len=1405"	-	-	-	-
gnl|UG|Ssc#S35167963	12	3.45	0	0	13	3.91	"Sus scrofa mRNA, clone:OVRM10161E01, expressed in ovary /gb=AK236182 /gi=115551776 /ug=Ssc.10953 /len=2649"	GO:0005746//mitochondrial respiratory chain	GO:0043169//cation binding;GO:0051536//iron-sulfur cluster binding;GO:0050136//NADH dehydrogenase (quinone) activity	GO:0012501//programmed cell death;GO:0009205;GO:0022904//respiratory electron transport chain;GO:0051234//establishment of localization;GO:0042391//regulation of membrane potential	"gi|311272935|ref|XP_003133651.1|/0/PREDICTED: NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35173095	10	2.88	9	2.57	6	1.8	"Sus scrofa mRNA, clone:SPL010065D01, expressed in spleen /gb=AK237586 /gi=115546740 /ug=Ssc.18070 /len=1944"	GO:0043231//intracellular membrane-bounded organelle	"GO:0043169//cation binding;GO:0016891//endoribonuclease activity, producing 5'-phosphomonoesters"	GO:0000377	gi|148743860|gb|AAI42221.1|/0/DBR1 protein [Bos taurus]
gnl|UG|Ssc#S39877045	0	0	0	0	0	0	"rcly20b_a2.y1 cly Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV972120 /gi=178546108 /ug=Ssc.90529 /len=309"	GO:0043231//intracellular membrane-bounded organelle	GO:0017136//NAD-dependent histone deacetylase activity	GO:0007166//cell surface receptor linked signaling pathway;GO:0031016//pancreas development;GO:0006476//protein deacetylation;GO:0060026//convergent extension;GO:0009952//anterior/posterior pattern formation;GO:0008283//cell proliferation;GO:0010720//positive regulation of cell development;GO:0021548;GO:0050931//pigment cell differentiation;GO:0010001//glial cell differentiation;GO:0048863//stem cell differentiation;GO:0009953//dorsal/ventral pattern formation;GO:0016477//cell migration;GO:0006325//chromatin organization	gi|311258850|ref|XP_003127820.1|/1.53407e-52/PREDICTED: histone deacetylase 1-like [Sus scrofa]
gnl|UG|Ssc#S46879864	16	4.61	19	5.43	14	4.21	"PREDICTED: Sus scrofa tripartite motif-containing protein 45-like, transcript variant 1 (LOC100157373), mRNA /cds=p(325,2067) /gb=XM_001929343 /gi=311254505 /ug=Ssc.14424 /len=2701"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	-	gi|194036391|ref|XP_001929378.1|/0/PREDICTED: tripartite motif-containing protein 45-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S40470381	24	6.91	116	33.16	8	2.4	"rsme023_k10.y1 sme Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW564987 /gi=183061077 /ug=Ssc.92413 /len=234"	GO:0005865//striated muscle thin filament	GO:0046872//metal ion binding;GO:0008092//cytoskeletal protein binding	GO:0006941//striated muscle contraction	gi|152968478|gb|ABS50254.1|/1.49206e-31/fast skeletal muscle troponin C [Sus scrofa]
gnl|UG|Ssc#S46880666	239	68.81	161	46.02	246	73.93	"PREDICTED: Sus scrofa extracellular related kinase 3 (SUSERK3), mRNA /cds=p(802,2970) /gb=XM_001925291 /gi=311244723 /ug=Ssc.3426 /len=4233"	GO:0044424//intracellular part	GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0032559	GO:0006464//protein modification process;GO:0023052//signaling	gi|194034714|ref|XP_001925326.1|/0/PREDICTED: mitogen-activated protein kinase 6 [Sus scrofa]
gnl|UG|Ssc#S58309852	0	0	7	2	0	0	"PREDICTED: Sus scrofa tumor necrosis factor receptor superfamily member 3-like (LOC100520196), mRNA /cds=p(169,1434) /gb=XM_003126547 /gi=311256310 /ug=Ssc.27574 /len=2092"	-	GO:0005488//binding	GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0009612//response to mechanical stimulus;GO:0048534	gi|311256311|ref|XP_003126595.1|/0/PREDICTED: tumor necrosis factor receptor superfamily member 3-like [Sus scrofa]
gnl|UG|Ssc#S17516435	1537	442.51	1373	392.47	1637	491.96	"BX671004 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0035.h.23 5prim, mRNA sequence /clone=scac0035.h.23 /clone_end=5' /gb=BX671004 /gi=90245315 /ug=Ssc.1154 /len=1009"	GO:0031981//nuclear lumen;GO:0015934//large ribosomal subunit	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0007417//central nervous system development;GO:0007049//cell cycle;GO:0031016//pancreas development	gi|296232623|ref|XP_002761703.1|/3.95285e-38/PREDICTED: 60S ribosomal protein L36-like [Callithrix jacchus]
gnl|UG|Ssc#S35168235	15	4.32	3	0.86	12	3.61	"Sus scrofa mRNA, clone:OVRM10155E04, expressed in ovary /gb=AK236133 /gi=115551455 /ug=Ssc.1784 /len=1356"	GO:0031224//intrinsic to membrane	-	-	gi|118601796|ref|NP_001073068.1|/2.49434e-159/transmembrane protein 120A [Bos taurus]
gnl|UG|Ssc#S23213549	24	6.91	8	2.29	12	3.61	"Sus scrofa clone Clu_11288.scr.msk.p1.Contig1, mRNA sequence /gb=AY609428 /gi=52350713 /ug=Ssc.60051 /len=1852"	-	GO:0005488//binding	GO:0019725//cellular homeostasis;GO:0006451//translational readthrough	gi|254292361|ref|NP_001156880.1|/1.18819e-96/selenoprotein T [Sus scrofa]
gnl|UG|Ssc#S58309737	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa host cell factor C2 (HCFC2), mRNA /cds=p(30,2408) /gb=XM_003126644 /gi=311256566 /ug=Ssc.22272 /len=2592"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity	"GO:0006355//regulation of transcription, DNA-dependent"	gi|311256567|ref|XP_003126692.1|/0/PREDICTED: host cell factor 2-like [Sus scrofa]
gnl|UG|Ssc#S35166889	47	13.53	250	71.46	25	7.51	"Sus scrofa mRNA, clone:THY010104C04, expressed in thymus /gb=AK239444 /gi=115552850 /ug=Ssc.15660 /len=1449"	-	-	-	-
gnl|UG|Ssc#S46877931	3	0.86	6	1.72	2	0.6	"PREDICTED: Sus scrofa bromodomain and PHD finger containing, 3 (BRPF3), mRNA /cds=p(1,3633) /gb=XM_001927462 /gi=311260308 /ug=Ssc.11621 /len=3783"	GO:0070775;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding	GO:0001775//cell activation;GO:0006887//exocytosis;GO:0007599//hemostasis;GO:0016573//histone acetylation	gi|311260309|ref|XP_001927497.2|/0/PREDICTED: bromodomain and PHD finger-containing protein 3 [Sus scrofa]
gnl|UG|Ssc#S58311602	16	4.61	4	1.14	8	2.4	"PREDICTED: Sus scrofa sodium-dependent phosphate transporter 1-like (LOC100518065), mRNA /cds=p(41,2086) /gb=XM_003124805 /gi=311251932 /ug=Ssc.45288 /len=2086"	GO:0016021//integral to membrane	GO:0004871//signal transducer activity;GO:0005436//sodium:phosphate symporter activity	GO:0006793//phosphorus metabolic process;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0030001//metal ion transport;GO:0006817//phosphate transport	gi|311251933|ref|XP_003124853.1|/0/PREDICTED: sodium-dependent phosphate transporter 1-like [Sus scrofa]
gnl|UG|Ssc#S26728785	4	1.15	0	0	0	0	"AJ964869 KN404_2 Sus scrofa cDNA clone C0007752h24 5', mRNA sequence /clone=C0007752h24 /clone_end=5' /gb=AJ964869 /gi=74381685 /ug=Ssc.27562 /len=839"	-	-	-	-
gnl|UG|Ssc#S58305648	5	1.44	2	0.57	7	2.1	"PREDICTED: Sus scrofa pre-mRNA-splicing factor 18-like (LOC100511773), mRNA /cds=p(128,1156) /gb=XM_003130743 /gi=311265736 /ug=Ssc.13735 /len=2294"	GO:0016604//nuclear body;GO:0030529//ribonucleoprotein complex	GO:0008200//ion channel inhibitor activity	GO:0006396//RNA processing	gi|73949024|ref|XP_535182.2|/0/PREDICTED: similar to Pre-mRNA splicing factor 18 (PRP18 homolog) (hPRP18) isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58313360	12	3.45	6	1.72	35	10.52	"PREDICTED: Sus scrofa fizzy-related protein homolog (LOC100519076), mRNA /cds=p(249,1730) /gb=XM_003123040 /gi=311248333 /ug=Ssc.15894 /len=3869"	-	-	-	-
gnl|UG|Ssc#S58304184	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa ring finger protein 123 (RNF123), mRNA /cds=p(59,4003) /gb=XM_003132216 /gi=311268910 /ug=Ssc.27512 /len=4105"	GO:0044424//intracellular part	GO:0046914//transition metal ion binding;GO:0003824//catalytic activity	-	gi|311268911|ref|XP_003132264.1|/0/PREDICTED: e3 ubiquitin-protein ligase RNF123-like [Sus scrofa]
gnl|UG|Ssc#S55324204	0	0	0	0	0	0	"Sus scrofa mRNA, clone:AMP010008H07, expressed in alveolar macrophages /gb=AK343654 /gi=288780668 /ug=Ssc.75745 /len=2432"	GO:0005768//endosome	GO:0005102//receptor binding	"GO:0007041//lysosomal transport;GO:0006355//regulation of transcription, DNA-dependent;GO:0006486//protein glycosylation;GO:0006886//intracellular protein transport"	gi|301776867|ref|XP_002923855.1|/0/PREDICTED: LOW QUALITY PROTEIN: trafficking kinesin-binding protein 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S21656159	0	0	2	0.57	0	0	"Sus scrofa ST3 beta-galactoside alpha-2,3-sialyltransferase 1 (ST3GAL1), mRNA /cds=p(91,1122) /gb=NM_001004047 /gi=51592140 /ug=Ssc.55798 /len=1217"	GO:0031228//intrinsic to Golgi membrane	GO:0008373//sialyltransferase activity	GO:0006464//protein modification process	"gi|51592141|ref|NP_001004047.1|/0/CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 [Sus scrofa]"
gnl|UG|Ssc#S19547811	7	2.02	15	4.29	7	2.1	"994089 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN163978 /gi=46178408 /ug=Ssc.4295 /len=714"	-	-	-	-
gnl|UG|Ssc#S46876116	4	1.15	4	1.14	4	1.2	"PREDICTED: Sus scrofa mitochondrial tumor suppressor 1 (LOC100153650), mRNA /cds=p(1,3663) /gb=XM_001926372 /gi=311274210 /ug=Ssc.25402 /len=4080"	GO:0015630//microtubule cytoskeleton;GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311274211|ref|XP_001926407.2|/0/PREDICTED: microtubule-associated tumor suppressor 1 homolog [Sus scrofa]
gnl|UG|Ssc#S58314146	2	0.58	7	2	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100512086 (LOC100512086), mRNA /cds=p(61,4725) /gb=XM_003122259 /gi=311246683 /ug=Ssc.47273 /len=4725"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0030674//protein binding, bridging;GO:0030695//GTPase regulator activity"	GO:0000165//MAPKKK cascade;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007155//cell adhesion;GO:0001944//vasculature development	gi|311246684|ref|XP_003122307.1|/0/PREDICTED: hypothetical protein LOC100512086 [Sus scrofa]
gnl|UG|Ssc#S41577006	2	0.58	0	0	0	0	"PIC-B-1262 Sus Scrofa Adipocyte Zap Express Library Before differentiation Sus scrofa cDNA clone SS-AB-4-3a-T3_P11, mRNA sequence /clone=SS-AB-4-3a-T3_P11 /gb=EH007891 /gi=161463147 /ug=Ssc.61430 /len=610"	GO:0043231//intracellular membrane-bounded organelle	GO:0003729//mRNA binding	GO:0012502//induction of programmed cell death;GO:0006412//translation;GO:0043484//regulation of RNA splicing;GO:0010558	gi|62088002|dbj|BAD92448.1|/4.19486e-66/TIA1 protein variant [Homo sapiens]
gnl|UG|Ssc#S26716627	25	7.2	11	3.14	11	3.31	"AJ952711 KN404_1 Sus scrofa cDNA clone C0007742i01 3', mRNA sequence /clone=C0007742i01 /clone_end=3' /gb=AJ952711 /gi=74369527 /ug=Ssc.36693 /len=859"	GO:0031224//intrinsic to membrane;GO:0034385	-	GO:0051234//establishment of localization;GO:0010876	gi|291407229|ref|XP_002720011.1|/8.46091e-23/PREDICTED: apolipoprotein O-like [Oryctolagus cuniculus]
gnl|UG|Ssc#S6056680	124	35.7	238	68.03	98	29.45	"MI-P-E6-ahq-c-03-1-UM.s1 MI-P-E6 Sus scrofa cDNA clone MI-P-E6-ahq-c-03-1-UM 3', mRNA sequence /clone=MI-P-E6-ahq-c-03-1-UM /clone_end=3' /gb=BQ599965 /gi=21546691 /ug=Ssc.81448 /len=373"	-	-	-	-
gnl|UG|Ssc#S43509601	16	4.61	9	2.57	22	6.61	"Sus scrofa bromodomain containing 2 (BRD2), mRNA /cds=p(1681,4092) /gb=NM_001123085 /gi=178057338 /ug=Ssc.20953 /len=4708"	GO:0043231//intracellular membrane-bounded organelle	GO:0004672//protein kinase activity	GO:0048232//male gamete generation	gi|178057339|ref|NP_001116557.1|/0/bromodomain-containing protein 2 [Sus scrofa]
gnl|UG|Ssc#S58304875	638	183.68	394	112.62	619	186.03	"PREDICTED: Sus scrofa ribosomal protein L19 (RPL19), mRNA /cds=p(48,638) /gb=XM_003131509 /gi=311267437 /ug=Ssc.41624 /len=794"	GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|296237041|ref|XP_002763584.1|/9.87731e-68/PREDICTED: 60S ribosomal protein L19-like [Callithrix jacchus]
gnl|UG|Ssc#S46879246	2	0.58	18	5.15	0	0	"PREDICTED: Sus scrofa histidine ammonia-lyase-like (LOC100154617), mRNA /cds=p(1,1974) /gb=XM_001925061 /gi=194037672 /ug=Ssc.32439 /len=2194"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0016841//ammonia-lyase activity	GO:0006547//histidine metabolic process	gi|194037673|ref|XP_001925096.1|/0/PREDICTED: histidine ammonia-lyase-like [Sus scrofa]
gnl|UG|Ssc#S58304608	0	0	0	0	0	0	"PREDICTED: Sus scrofa serine/threonine-protein kinase TAO1-like (LOC100516577), mRNA /cds=p(101,3106) /gb=XM_003131782 /gi=311267994 /ug=Ssc.52048 /len=3547"	GO:0043227//membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0019900//kinase binding;GO:0032559;GO:0019887//protein kinase regulator activity	GO:0001932//regulation of protein phosphorylation;GO:0007067//mitosis	gi|296476882|gb|DAA18997.1|/0/KIAA1361 protein-like [Bos taurus]
gnl|UG|Ssc#S17504803	2	0.58	0	0	0	0	"885214 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF792303 /gi=37796864 /ug=Ssc.22355 /len=647"	-	-	-	-
gnl|UG|Ssc#S55248525	2	0.58	0	0	0	0	"FS700266 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010044A07 5', mRNA sequence /clone=PST010044A07 /clone_end=5' /gb=FS700266 /gi=288239777 /ug=Ssc.77236 /len=901"	GO:0031252//cell leading edge;GO:0005626//insoluble fraction;GO:0016020//membrane;GO:0044424//intracellular part	GO:0004872//receptor activity;GO:0005083//small GTPase regulator activity;GO:0035091//phosphatidylinositol binding	GO:0019222//regulation of metabolic process;GO:0030155//regulation of cell adhesion;GO:0006810//transport;GO:0032011//ARF protein signal transduction	gi|60360638|dbj|BAD90330.1|/1.25501e-128/mKIAA4241 protein [Mus musculus]
gnl|UG|Ssc#S46876772	22	6.33	24	6.86	30	9.02	"PREDICTED: Sus scrofa SEC24 family, member C (S. cerevisiae) (SEC24C), mRNA /cds=p(1,3288) /gb=XM_001928193 /gi=311271393 /ug=Ssc.23230 /len=4386"	GO:0012507//ER to Golgi transport vesicle membrane	GO:0046914//transition metal ion binding	GO:0006901//vesicle coating;GO:0048193//Golgi vesicle transport;GO:0015031//protein transport;GO:0006487//protein N-linked glycosylation	gi|194042814|ref|XP_001928228.1|/0/PREDICTED: protein transport protein Sec24C [Sus scrofa]
gnl|UG|Ssc#S58304300	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa cAMP-regulated phosphoprotein, 21kDa (ARPP21), mRNA /cds=p(286,2718) /gb=XM_003132098 /gi=311268643 /ug=Ssc.23571 /len=3448"	-	-	-	gi|311268644|ref|XP_003132146.1|/0/PREDICTED: cAMP-regulated phosphoprotein 21-like [Sus scrofa]
gnl|UG|Ssc#S46879397	169	48.66	65	18.58	73	21.94	"PREDICTED: Sus scrofa major facilitator superfamily domain-containing protein 5-like (LOC100157167), mRNA /cds=p(1,1398) /gb=XM_001926510 /gi=311255433 /ug=Ssc.3603 /len=1640"	GO:0031224//intrinsic to membrane	-	GO:0051234//establishment of localization	gi|311255434|ref|XP_001926545.2|/0/PREDICTED: major facilitator superfamily domain-containing protein 5-like [Sus scrofa]
gnl|UG|Ssc#S58314640	90	25.91	32	9.15	113	33.96	"PREDICTED: Sus scrofa kinesin-like protein KIF23-like (LOC100522116), mRNA /cds=p(1,3237) /gb=XM_003121763 /gi=311245384 /ug=Ssc.2099 /len=3848"	GO:0005875//microtubule associated complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0003774//motor activity;GO:0032559	GO:0000087//M phase of mitotic cell cycle;GO:0007052//mitotic spindle organization;GO:0007599//hemostasis	gi|311245385|ref|XP_003121811.1|/0/PREDICTED: kinesin-like protein KIF23-like [Sus scrofa]
gnl|UG|Ssc#S58305585	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa regulator of nonsense transcripts 2-like (LOC100512918), mRNA /cds=p(59,220) /gb=XM_003130812 /gi=311265863 /ug=Ssc.44383 /len=1497"	-	-	GO:0044260	gi|126340410|ref|XP_001367767.1|/7.80144e-24/PREDICTED: similar to regulator of nonsense transcripts 2 [Monodelphis domestica]
gnl|UG|Ssc#S40145867	295	84.93	403	115.2	214	64.31	"rhlv21b_k7.y1 hlv Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW240774 /gi=182617622 /ug=Ssc.79055 /len=544"	-	-	-	-
gnl|UG|Ssc#S23213131	18	5.18	16	4.57	8	2.4	"Sus scrofa clone Clu_37429.scr.msk.p1.Contig1, mRNA sequence /gb=AY609877 /gi=52351447 /ug=Ssc.43063 /len=1978"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0031967	GO:0017111//nucleoside-triphosphatase activity;GO:0000166//nucleotide binding	GO:0051234//establishment of localization;GO:0008152//metabolic process	"gi|194210154|ref|XP_001504712.2|/0/PREDICTED: similar to ATP-binding cassette, sub-family F (GCN20), member 2 [Equus caballus]"
gnl|UG|Ssc#S58302293	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa transcription factor COE1-like (LOC100520467), mRNA /cds=p(1,1830) /gb=XM_003134103 /gi=311274020 /ug=Ssc.74301 /len=1830"	GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0019904//protein domain specific binding	"GO:0006355//regulation of transcription, DNA-dependent;GO:0032501//multicellular organismal process"	gi|311274021|ref|XP_003134151.1|/0/PREDICTED: transcription factor COE1-like [Sus scrofa]
gnl|UG|Ssc#S58310313	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa t-complex protein 11-like protein 2-like (LOC100523311), mRNA /cds=p(1,1560) /gb=XM_003126092 /gi=311255216 /ug=Ssc.31228 /len=1560"	-	-	-	gi|311255217|ref|XP_003126140.1|/0/PREDICTED: t-complex protein 11-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S40082349	34	9.79	30	8.58	39	11.72	"rfcc13b_c4.y1 fcc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW177256 /gi=182613439 /ug=Ssc.67635 /len=372"	-	-	-	-
gnl|UG|Ssc#S58310662	2	0.58	7	2	0	0	"PREDICTED: Sus scrofa CREB-regulated transcription coactivator 2-like (LOC100519835), mRNA /cds=p(1,2082) /gb=XM_003125736 /gi=311254232 /ug=Ssc.82544 /len=2553"	GO:0031981//nuclear lumen	GO:0005488//binding	"GO:0006351//transcription, DNA-dependent"	gi|194036125|ref|XP_001929541.1|/0/PREDICTED: CREB-regulated transcription coactivator 2 [Sus scrofa]
gnl|UG|Ssc#S17516224	3	0.86	6	1.72	4	1.2	"BX670793 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0033.o.12 5prim, mRNA sequence /clone=scac0033.o.12 /clone_end=5' /gb=BX670793 /gi=90244510 /ug=Ssc.20244 /len=868"	-	-	-	gi|73984931|ref|XP_541735.2|/8.36495e-34/PREDICTED: similar to G protein-coupled receptor 175 [Canis familiaris]
gnl|UG|Ssc#S58312355	0	0	2	0.57	5	1.5	"PREDICTED: Sus scrofa protein diaphanous homolog 1-like (LOC100511072), mRNA /cds=p(1,3738) /gb=XM_003123999 /gi=311250381 /ug=Ssc.34514 /len=3738"	GO:0043232;GO:0001726//ruffle;GO:0016020//membrane	GO:0017016//Ras GTPase binding;GO:0008092//cytoskeletal protein binding	GO:0050954//sensory perception of mechanical stimulus;GO:0008154//actin polymerization or depolymerization	gi|311250382|ref|XP_003124047.1|/0/PREDICTED: LOW QUALITY PROTEIN: protein diaphanous homolog 1-like [Sus scrofa]
gnl|UG|Ssc#S35173812	7	2.02	14	4	5	1.5	"Sus scrofa mRNA, clone:SPL010049C08, expressed in spleen /gb=AK237465 /gi=115546023 /ug=Ssc.59756 /len=1408"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0030117//membrane coat;GO:0012506//vesicle membrane;GO:0044431//Golgi apparatus part	GO:0005488//binding;GO:0022892	GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0015031//protein transport	gi|89267912|emb|CAJ82414.1|/1.79556e-91/adaptor-related protein complex [Xenopus (Silurana) tropicalis]
gnl|UG|Ssc#S58310326	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa bactericidal/permeability-increasing protein-like 2 (BPIL2), mRNA /cds=p(169,1692) /gb=XM_003126074 /gi=311255188 /ug=Ssc.30161 /len=2168"	-	GO:0008289//lipid binding	-	gi|311255189|ref|XP_003126122.1|/0/PREDICTED: bactericidal/permeability-increasing protein-like 2-like [Sus scrofa]
gnl|UG|Ssc#S46876954	16	4.61	6	1.72	8	2.4	"PREDICTED: Sus scrofa multiple inositol-polyphosphate phosphatase 1 (MINPP1), mRNA /cds=p(1,1458) /gb=XM_001927672 /gi=194042434 /ug=Ssc.75841 /len=1458"	GO:0044432//endoplasmic reticulum part;GO:0016020//membrane	GO:0034416//bisphosphoglycerate phosphatase activity;GO:0004437//inositol or phosphatidylinositol phosphatase activity	GO:0048017//inositol lipid-mediated signaling;GO:0001503//ossification;GO:0006796//phosphate metabolic process	gi|194042435|ref|XP_001927707.1|/0/PREDICTED: multiple inositol polyphosphate phosphatase 1-like [Sus scrofa]
gnl|UG|Ssc#S46880832	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa HAUS augmin-like complex, subunit 6 (HAUS6), mRNA /cds=p(1,2871) /gb=XM_001928749 /gi=311245738 /ug=Ssc.71655 /len=2883"	GO:0005815//microtubule organizing center;GO:0005875//microtubule associated complex;GO:0031981//nuclear lumen	-	GO:0031023//microtubule organizing center organization;GO:0007051//spindle organization;GO:0000087//M phase of mitotic cell cycle	gi|194034357|ref|XP_001928784.1|/0/PREDICTED: HAUS augmin-like complex subunit 6-like [Sus scrofa]
gnl|UG|Ssc#S35165702	49	14.11	29	8.29	64	19.23	"Sus scrofa mRNA, clone:LVRM10108B10, expressed in liver /gb=AK233233 /gi=115554024 /ug=Ssc.9571 /len=1692"	-	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	-	gi|194039525|ref|XP_001928215.1|/4.43278e-95/PREDICTED: AN1-type zinc finger protein 6 [Sus scrofa]
gnl|UG|Ssc#S35167296	5	1.44	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10193E06, expressed in ovary /gb=AK236448 /gi=115552443 /ug=Ssc.16910 /len=2032"	-	-	-	-
gnl|UG|Ssc#S55313287	0	0	0	0	0	0	"FS688599 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVRT10027B08 5', mRNA sequence /clone=OVRT10027B08 /clone_end=5' /gb=FS688599 /gi=288258463 /ug=Ssc.88883 /len=806"	GO:0031981//nuclear lumen;GO:0044425//membrane part	GO:0046914//transition metal ion binding;GO:0060089;GO:0003824//catalytic activity;GO:0019900//kinase binding	GO:0050856//regulation of T cell receptor signaling pathway;GO:0002666//positive regulation of T cell tolerance induction;GO:0010033//response to organic substance;GO:0042130//negative regulation of T cell proliferation;GO:0009628//response to abiotic stimulus;GO:0009719;GO:0009896;GO:0006606//protein import into nucleus	gi|114588318|ref|XP_516635.2|/1.03069e-118/PREDICTED: Cas-Br-M (murine) ecotropic retroviral transforming sequence b [Pan troglodytes]
gnl|UG|Ssc#S40097501	5	1.44	8	2.29	11	3.31	"rpfco0113_m13.y1 fco Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW192408 /gi=182477616 /ug=Ssc.67856 /len=524"	-	-	-	-
gnl|UG|Ssc#S58311886	184	52.97	143	40.88	121	36.36	"PREDICTED: Sus scrofa elongation factor Tu, mitochondrial-like (LOC100516488), mRNA /cds=p(75,1433) /gb=XM_003124515 /gi=311251335 /ug=Ssc.50077 /len=1631"	GO:0019866//organelle inner membrane;GO:0005759//mitochondrial matrix	"GO:0017111//nucleoside-triphosphatase activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561"	GO:0006412//translation;GO:0009207	"gi|311251336|ref|XP_003124563.1|/0/PREDICTED: elongation factor Tu, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S35172166	2	0.58	0	0	3	0.9	"Sus scrofa mRNA, clone:ITT010038B11, expressed in intestine /gb=AK231327 /gi=115547669 /ug=Ssc.94295 /len=1462"	GO:0005768//endosome	GO:0035091//phosphatidylinositol binding;GO:0046914//transition metal ion binding	-	gi|7243268|dbj|BAA92673.1|/0/KIAA1435 protein [Homo sapiens]
gnl|UG|Ssc#S58301287	5	1.44	11	3.14	0	0	"PREDICTED: Sus scrofa RIB43A-like with coiled-coils protein 1-like (LOC100524122), mRNA /cds=p(161,1300) /gb=XM_003135125 /gi=311276329 /ug=Ssc.74330 /len=1445"	-	-	-	gi|311276330|ref|XP_003135173.1|/4.2015e-168/PREDICTED: RIB43A-like with coiled-coils protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58315309	0	0	0	0	0	0	"PREDICTED: Sus scrofa brain protein 44-like protein-like (LOC100513634), mRNA /cds=p(137,466) /gb=XM_003121089 /gi=311243653 /ug=Ssc.8972 /len=943"	GO:0019866//organelle inner membrane;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|116004303|ref|NP_001070510.1|/4.26871e-58/brain protein 44-like protein [Bos taurus]
gnl|UG|Ssc#S35174092	0	0	4	1.14	2	0.6	"Sus scrofa mRNA, clone:OVR010019F10, expressed in ovary /gb=AK234176 /gi=115545743 /ug=Ssc.55120 /len=875"	GO:0015630//microtubule cytoskeleton;GO:0044444//cytoplasmic part;GO:0043231//intracellular membrane-bounded organelle	GO:0005515//protein binding	GO:0022402//cell cycle process	gi|12963687|ref|NP_075953.1|/1.69459e-58/Sjoegren syndrome nuclear autoantigen 1 homolog [Mus musculus]
gnl|UG|Ssc#S35166046	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:UTR010007B08, expressed in uterus /gb=AK239879 /gi=115553692 /ug=Ssc.55821 /len=1660"	GO:0043235//receptor complex;GO:0044444//cytoplasmic part	GO:0060089;GO:0005102//receptor binding;GO:0019899//enzyme binding	GO:0001775//cell activation;GO:0006952//defense response;GO:0007165//signal transduction;GO:0006796//phosphate metabolic process;GO:0007154//cell communication	gi|122136310|sp|Q2LGB5.1|TOLIP_BOVIN/3.54683e-105/RecName: Full=Toll-interacting protein
gnl|UG|Ssc#S58302404	16	4.61	2	0.57	23	6.91	"PREDICTED: Sus scrofa mimitin, mitochondrial-like (LOC100524772), mRNA /cds=p(29,286) /gb=XM_003133991 /gi=311273792 /ug=Ssc.21621 /len=1046"	GO:0043231//intracellular membrane-bounded organelle	GO:0050136//NADH dehydrogenase (quinone) activity	-	"gi|311273793|ref|XP_003134039.1|/1.01444e-42/PREDICTED: mimitin, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58306510	19	5.47	2	0.57	13	3.91	"PREDICTED: Sus scrofa platelet-activating factor acetylhydrolase IB subunit beta-like (LOC100523683), mRNA /cds=p(2,691) /gb=XM_003129883 /gi=311263969 /ug=Ssc.2783 /len=3723"	GO:0044444//cytoplasmic part	GO:0042802//identical protein binding;GO:0004091//carboxylesterase activity;GO:0046983//protein dimerization activity;GO:0016407//acetyltransferase activity	GO:0006629//lipid metabolic process;GO:0007417//central nervous system development;GO:0009987//cellular process;GO:0048232//male gamete generation	gi|4505585|ref|NP_002563.1|/2.14536e-130/platelet-activating factor acetylhydrolase IB subunit beta isoform a [Homo sapiens]
gnl|UG|Ssc#S58302030	5	1.44	4	1.14	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100519985 (LOC100519985), mRNA /cds=p(1,1767) /gb=XM_003134369 /gi=311274649 /ug=Ssc.4869 /len=2369"	GO:0000151//ubiquitin ligase complex	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0019901//protein kinase binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding;GO:0019787//small conjugating protein ligase activity	GO:0050851//antigen receptor-mediated signaling pathway;GO:0051091//positive regulation of transcription factor activity;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0043433//negative regulation of transcription factor activity;GO:0042345//regulation of NF-kappaB import into nucleus;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0016567//protein ubiquitination;GO:0006915//apoptosis;GO:0051704	gi|311274650|ref|XP_003134417.1|/0/PREDICTED: hypothetical protein LOC100519985 [Sus scrofa]
gnl|UG|Ssc#S58304910	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa WAS/WASL-interacting protein family member 2-like (LOC100525252), mRNA /cds=p(176,1498) /gb=XM_003131488 /gi=311267367 /ug=Ssc.24454 /len=2593"	-	-	-	gi|311267368|ref|XP_003131536.1|/7.83155e-145/PREDICTED: WAS/WASL-interacting protein family member 2-like [Sus scrofa]
gnl|UG|Ssc#S46876986	16	4.61	39	11.15	12	3.61	"PREDICTED: Sus scrofa translocase of inner mitochondrial membrane 23 homolog (yeast) (TIMM23), mRNA /cds=p(1,909) /gb=XM_001926555 /gi=311271516 /ug=Ssc.7629 /len=1414"	GO:0031224//intrinsic to membrane;GO:0005743//mitochondrial inner membrane	GO:0008320//protein transmembrane transporter activity;GO:0005515//protein binding	GO:0006605//protein targeting	gi|311271517|ref|XP_001926590.2|/2.10069e-156/PREDICTED: putative mitochondrial import inner membrane translocase subunit Tim23B [Sus scrofa]
gnl|UG|Ssc#S46880129	18	5.18	9	2.57	16	4.81	"PREDICTED: Sus scrofa DDB1 and CUL4 associated factor 8, transcript variant 2 (DCAF8), mRNA /cds=p(491,2281) /gb=XM_001928867 /gi=311254009 /ug=Ssc.19228 /len=2427"	GO:0031461//cullin-RING ubiquitin ligase complex	GO:0005488//binding	GO:0032446//protein modification by small protein conjugation	gi|194035839|ref|XP_001928921.1|/0/PREDICTED: DDB1- and CUL4-associated factor 8 isoform 3 [Sus scrofa]
gnl|UG|Ssc#S55325371	34	9.79	27	7.72	45	13.52	"Sus scrofa mRNA, clone:PTG010037E10, expressed in pituitary gland /gb=AK349280 /gi=288779455 /ug=Ssc.7116 /len=1721"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0008252//nucleotidase activity;GO:0046872//metal ion binding;GO:0016740//transferase activity	GO:0006213//pyrimidine nucleoside metabolic process;GO:0006753;GO:0009112;GO:0046128;GO:0006796//phosphate metabolic process	gi|119893966|ref|XP_613852.3|/3.18381e-165/PREDICTED: cytosolic 5'-nucleotidase III [Bos taurus]
gnl|UG|Ssc#S20936628	0	0	2	0.57	0	0	"AJ648351 CSEQRAN19 Sus scrofa cDNA clone C0003264_G13, mRNA sequence /clone=C0003264_G13 /gb=AJ648351 /gi=49325196 /ug=Ssc.85538 /len=439"	GO:0043234//protein complex	-	-	"gi|149035026|gb|EDL89746.1|/2.28288e-40/rCG42703, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S35168607	51	14.68	22	6.29	24	7.21	"Sus scrofa mRNA, clone:THY010050B04, expressed in thymus /gb=AK238944 /gi=115551083 /ug=Ssc.48409 /len=2704"	GO:0044444//cytoplasmic part	GO:0005488//binding	"GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|139948917|ref|NP_001077224.1|/0/CCR4-NOT transcription complex subunit 10 [Bos taurus]
gnl|UG|Ssc#S20937572	0	0	2	0.57	5	1.5	"AJ649295 CSEQRAN19 Sus scrofa cDNA clone C0003272_B12, mRNA sequence /clone=C0003272_B12 /gb=AJ649295 /gi=49326140 /ug=Ssc.85577 /len=524"	GO:0044424//intracellular part;GO:0000267//cell fraction	GO:0005488//binding;GO:0004175//endopeptidase activity;GO:0008238//exopeptidase activity;GO:0008236//serine-type peptidase activity	GO:0019538//protein metabolic process	"gi|149046248|gb|EDL99141.1|/1.52494e-51/tripeptidyl peptidase II, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S6033620	0	0	0	0	0	0	"246654 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BF194534 /gi=11077840 /ti=470938842 /ug=Ssc.49337 /len=528"	GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding	GO:0006412//translation;GO:0031669//cellular response to nutrient levels;GO:0035195//gene silencing by miRNA	gi|297283685|ref|XP_001098013.2|/5.3012e-76/PREDICTED: trinucleotide repeat-containing gene 6A protein isoform 1 [Macaca mulatta]
gnl|UG|Ssc#S18547904	8	2.3	8	2.29	3	0.9	"BX916555 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0036.o.22 5prim, mRNA sequence /clone=scan0036.o.22 /clone_end=5' /gb=BX916555 /gi=90232139 /ug=Ssc.21670 /len=835"	-	-	-	-
gnl|UG|Ssc#S40293115	16	4.61	7	2	2	0.6	"rmed34c_i10.y1 med Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW387722 /gi=182880389 /ug=Ssc.24673 /len=630"	GO:0000785//chromatin;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0005515//protein binding	GO:0034728	gi|309262863|ref|XP_003085904.1|/2.32137e-54/PREDICTED: src substrate cortactin [Mus musculus]
gnl|UG|Ssc#S58309485	0	0	0	0	0	0	"PREDICTED: Sus scrofa telomeric repeat-binding factor 2-like (LOC100517762), mRNA /cds=p(16,1518) /gb=XM_003126908 /gi=311257113 /ug=Ssc.24272 /len=2513"	GO:0031981//nuclear lumen;GO:0000782;GO:0043234//protein complex;GO:0043073//germ cell nucleus	GO:0042802//identical protein binding;GO:0043565//sequence-specific DNA binding;GO:0003690//double-stranded DNA binding	GO:0001304;GO:0034502//protein localization to chromosome;GO:0043009//chordate embryonic development;GO:0016233//telomere capping;GO:0006278//RNA-dependent DNA replication;GO:0032201//telomere maintenance via semi-conservative replication	gi|311257114|ref|XP_003126956.1|/0/PREDICTED: telomeric repeat-binding factor 2-like [Sus scrofa]
gnl|UG|Ssc#S58305784	2	0.58	2	0.57	7	2.1	"PREDICTED: Sus scrofa lysine-specific demethylase 5B-like (LOC100511772), partial mRNA /cds=p(1,4614) /gb=XM_003130616 /gi=311265454 /ug=Ssc.41848 /len=6177"	GO:0031981//nuclear lumen	"GO:0003712//transcription cofactor activity;GO:0032453//histone demethylase activity (H3-K4 specific);GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0001071//nucleic acid binding transcription factor activity"	"GO:0034720//histone H3-K4 demethylation;GO:0006355//regulation of transcription, DNA-dependent"	"gi|311265455|ref|XP_003130664.1|/0/PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 5B-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58302073	9	2.59	2	0.57	0	0	"PREDICTED: Sus scrofa vacuolar protein sorting-associated protein 16 homolog, transcript variant 1 (LOC100511290), mRNA /cds=p(43,2562) /gb=XM_003134328 /gi=311274557 /ug=Ssc.6553 /len=2704"	GO:0005770//late endosome;GO:0043005//neuron projection;GO:0005764//lysosome;GO:0005774//vacuolar membrane;GO:0044297//cell body;GO:0015629//actin cytoskeleton	GO:0003779//actin binding	GO:0015031//protein transport	gi|311274558|ref|XP_003134376.1|/0/PREDICTED: vacuolar protein sorting-associated protein 16 homolog isoform 1 [Sus scrofa]
gnl|UG|Ssc#S20116281	0	0	0	0	2	0.6	"Sus scrofa Niemann-Pick disease, type C1 (NPC1), mRNA /cds=p(81,3914) /gb=NM_214322 /gi=47523701 /ug=Ssc.1533 /len=4400"	GO:0005764//lysosome;GO:0016021//integral to membrane;GO:0005770//late endosome;GO:0012505//endomembrane system	GO:0005319//lipid transporter activity;GO:0005488//binding;GO:0004888//transmembrane receptor activity	GO:0010507//negative regulation of autophagy;GO:0008202//steroid metabolic process;GO:0007034//vacuolar transport;GO:0016192//vesicle-mediated transport;GO:0010038//response to metal ion;GO:0030301//cholesterol transport;GO:0055092//sterol homeostasis	gi|47523702|ref|NP_999487.1|/0/Niemann-Pick C1 protein precursor [Sus scrofa]
gnl|UG|Ssc#S20935295	45	12.96	100	28.58	29	8.72	"AJ647018 CSEQRAN19 Sus scrofa cDNA clone C0003104_G08, mRNA sequence /clone=C0003104_G08 /gb=AJ647018 /gi=49323863 /ug=Ssc.94869 /len=472"	GO:0031252//cell leading edge;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0060089;GO:0005488//binding	GO:0007599//hemostasis;GO:0007165//signal transduction;GO:0030031//cell projection assembly	"gi|149067917|gb|EDM17469.1|/1.42152e-27/SH2-B PH domain containing signaling mediator 1, isoform CRA_i [Rattus norvegicus]"
gnl|UG|Ssc#S35166629	4	1.15	0	0	3	0.9	"Sus scrofa mRNA, clone:THY010124D10, expressed in thymus /gb=AK239696 /gi=115553110 /ug=Ssc.4283 /len=2015"	-	GO:0005488//binding	-	gi|311255334|ref|XP_003126186.1|/0/PREDICTED: bridging integrator 2-like [Sus scrofa]
gnl|UG|Ssc#S58304714	13	3.74	10	2.86	0	0	"PREDICTED: Sus scrofa transmembrane protein 49-like (LOC100524644), mRNA /cds=p(1,1659) /gb=XM_003131688 /gi=311267772 /ug=Ssc.53755 /len=2828"	GO:0031224//intrinsic to membrane;GO:0005793//ER-Golgi intermediate compartment;GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311267773|ref|XP_003131736.1|/0/PREDICTED: transmembrane protein 49-like [Sus scrofa]
gnl|UG|Ssc#S58311225	0	0	0	0	0	0	"PREDICTED: Sus scrofa uncharacterized protein C2orf34-like (LOC100511503), mRNA /cds=p(64,834) /gb=XM_003125180 /gi=311252697 /ug=Ssc.49592 /len=834"	GO:0044424//intracellular part	GO:0016279//protein-lysine N-methyltransferase activity	GO:0006479//protein methylation	gi|311252698|ref|XP_003125228.1|/6.89476e-147/PREDICTED: uncharacterized protein C2orf34-like [Sus scrofa]
gnl|UG|Ssc#S49954378	9	2.59	5	1.43	8	2.4	"Sus scrofa PEG3 (PEG3) mRNA, partial cds /cds=p(1,627) /gb=EF619475 /gi=157613827 /ug=Ssc.22623 /len=2052"	-	-	-	gi|157613828|gb|ABV58971.1|/3.24792e-50/PEG3 [Sus scrofa]
gnl|UG|Ssc#S58305117	7	2.02	3	0.86	0	0	"PREDICTED: Sus scrofa nucleosome-remodeling factor subunit BPTF-like (LOC100525424), mRNA /cds=p(1,4164) /gb=XM_003131280 /gi=311266944 /ug=Ssc.25505 /len=4164"	-	-	-	gi|311266945|ref|XP_003131328.1|/0/PREDICTED: nucleosome-remodeling factor subunit BPTF-like [Sus scrofa]
gnl|UG|Ssc#S55322669	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:DCI010041H08, expressed in dendritic cells (immature) /gb=AK344414 /gi=288782203 /ug=Ssc.33660 /len=3439"	-	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|21361493|ref|NP_057506.2|/2.24466e-126/RING finger protein 141 [Homo sapiens]
gnl|UG|Ssc#S58313815	32	9.21	17	4.86	21	6.31	"PREDICTED: Sus scrofa nucleoside diphosphate-linked moiety X motif 22-like (LOC100521244), mRNA /cds=p(29,901) /gb=XM_003122574 /gi=311247406 /ug=Ssc.5442 /len=965"	-	GO:0003824//catalytic activity	-	gi|311247407|ref|XP_003122622.1|/8.96322e-160/PREDICTED: nucleoside diphosphate-linked moiety X motif 22-like [Sus scrofa]
gnl|UG|Ssc#S35165561	37	10.65	8	2.29	34	10.22	"Sus scrofa mRNA, clone:UTR010015F10, expressed in uterus /gb=AK239960 /gi=115554165 /ug=Ssc.24287 /len=2151"	GO:0034399//nuclear periphery;GO:0043234//protein complex;GO:0005856//cytoskeleton;GO:0005657//replication fork	GO:0032404;GO:0032135//DNA insertion or deletion binding;GO:0000700;GO:0030234//enzyme regulator activity	GO:0006261//DNA-dependent DNA replication;GO:0048017//inositol lipid-mediated signaling;GO:0010033//response to organic substance;GO:0015031//protein transport;GO:0051320;GO:0048513//organ development;GO:0006289//nucleotide-excision repair;GO:0010038//response to metal ion;GO:0000723//telomere maintenance;GO:0000082//G1/S transition of mitotic cell cycle;GO:0032070;GO:0006301//postreplication repair	gi|73991708|ref|XP_534355.2|/1.65e-145/PREDICTED: similar to proliferating cell nuclear antigen [Canis familiaris]
gnl|UG|Ssc#S46878039	30	8.64	32	9.15	31	9.32	"PREDICTED: Sus scrofa putative I kappa B protein, transcript variant 1 (LOC100154350), mRNA /cds=p(152,1294) /gb=XM_001928795 /gi=194040167 /ug=Ssc.44690 /len=1505"	-	GO:0005488//binding	GO:0042992//negative regulation of transcription factor import into nucleus	gi|194040168|ref|XP_001928830.1|/0/PREDICTED: putative I kappa B protein isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58302200	205	59.02	237	67.75	129	38.77	"PREDICTED: Sus scrofa pericentriolar material 1 (PCM1), mRNA /cds=p(42,1562) /gb=XM_003134192 /gi=311274220 /ug=Ssc.24677 /len=1879"	-	-	-	gi|311274221|ref|XP_003134240.1|/0/PREDICTED: pericentriolar material 1 protein-like [Sus scrofa]
gnl|UG|Ssc#S58313436	8	2.3	2	0.57	4	1.2	"PREDICTED: Sus scrofa proteasome subunit alpha type-1-like (LOC100516779), mRNA /cds=p(118,909) /gb=XM_003122965 /gi=311248176 /ug=Ssc.6830 /len=1221"	GO:0043231//intracellular membrane-bounded organelle;GO:0005839//proteasome core complex;GO:0030529//ribonucleoprotein complex	GO:0004175//endopeptidase activity;GO:0003676//nucleic acid binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0002437//inflammatory response to antigenic stimulus;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|114636649|ref|XP_508298.2|/1.19363e-141/PREDICTED: similar to Proteasome subunit alpha type 1 (Proteasome component C2) (Macropain subunit C2) (Multicatalytic endopeptidase complex subunit C2) (Proteasome nu chain) (30 kDa prosomal protein) (PROS-30) [Pan troglodytes]
gnl|UG|Ssc#S58301748	7	2.02	0	0	0	0	"PREDICTED: Sus scrofa nucleoporin 205kDa (NUP205), mRNA /cds=p(1,2001) /gb=XM_003134649 /gi=311275348 /ug=Ssc.37520 /len=2001"	GO:0005635//nuclear envelope	GO:0005488//binding	GO:0044238//primary metabolic process;GO:0050658//RNA transport;GO:0006606//protein import into nucleus;GO:0015758//glucose transport	gi|311275349|ref|XP_003134697.1|/0/PREDICTED: nuclear pore complex protein Nup205-like [Sus scrofa]
gnl|UG|Ssc#S18553466	2	0.58	0	0	0	0	"BX922117 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0024.c.09 5prim, mRNA sequence /clone=scan0024.c.09 /clone_end=5' /gb=BX922117 /gi=90233285 /ug=Ssc.85042 /len=838"	-	GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0006464//protein modification process	gi|296198998|ref|XP_002747058.1|/5.71726e-125/PREDICTED: cell division protein kinase 19-like isoform 2 [Callithrix jacchus]
gnl|UG|Ssc#S58306318	10	2.88	0	0	4	1.2	"PREDICTED: Sus scrofa zinc finger and BTB domain containing 44, transcript variant 2 (ZBTB44), mRNA /cds=p(58,1908) /gb=XM_003130080 /gi=311264358 /ug=Ssc.87203 /len=2201"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311264359|ref|XP_003130128.1|/0/PREDICTED: zinc finger and BTB domain-containing protein 44-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35173436	7	2.02	3	0.86	8	2.4	"Sus scrofa mRNA, clone:AMP010064D06, expressed in alveolar macrophage /gb=AK230918 /gi=115546399 /ug=Ssc.53401 /len=2411"	GO:0005769//early endosome;GO:0012506//vesicle membrane	GO:0005543//phospholipid binding;GO:0042802//identical protein binding	GO:0007176//regulation of epidermal growth factor receptor activity;GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0016197//endosome transport;GO:0015031//protein transport	gi|114652578|ref|XP_001134726.1|/4.60681e-176/PREDICTED: sorting nexin 6 isoform 1 [Pan troglodytes]
gnl|UG|Ssc#S58306150	14	4.03	11	3.14	5	1.5	"PREDICTED: Sus scrofa 26S protease regulatory subunit 7-like (LOC100514865), mRNA /cds=p(92,1393) /gb=XM_003130244 /gi=311264704 /ug=Ssc.4123 /len=2180"	GO:0031981//nuclear lumen;GO:0043234//protein complex	GO:0017111//nucleoside-triphosphatase activity;GO:0032559	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0009207;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0051704"	gi|291391275|ref|XP_002712149.1|/0/PREDICTED: proteasome 26S ATPase subunit 2 [Oryctolagus cuniculus]
gnl|UG|Ssc#S55323338	0	0	4	1.14	7	2.1	"Sus scrofa mRNA, clone:SPL010056B09, expressed in spleen /gb=AK350404 /gi=288781534 /ug=Ssc.84176 /len=2822"	-	GO:0046872//metal ion binding;GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|311249280|ref|XP_003123561.1|/0/PREDICTED: microtubule-associated serine/threonine-protein kinase 3-like [Sus scrofa]
gnl|UG|Ssc#S58314923	195	56.14	55	15.72	89	26.75	"PREDICTED: Sus scrofa disintegrin and metalloproteinase domain-containing protein 10-like (LOC100511358), mRNA /cds=p(1,1269) /gb=XM_003121482 /gi=311244660 /ug=Ssc.1114 /len=3521"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0044430//cytoskeletal part;GO:0005626//insoluble fraction;GO:0044431//Golgi apparatus part;GO:0031224//intrinsic to membrane;GO:0012505//endomembrane system	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005102//receptor binding;GO:0019904//protein domain specific binding;GO:0042802//identical protein binding;GO:0019900//kinase binding	GO:0002274;GO:0007155//cell adhesion;GO:0002690//positive regulation of leukocyte chemotaxis;GO:0008283//cell proliferation;GO:0043523//regulation of neuron apoptosis;GO:0043009//chordate embryonic development;GO:0006509//membrane protein ectodomain proteolysis;GO:0007154//cell communication;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0034097//response to cytokine stimulus;GO:0006464//protein modification process;GO:0002761//regulation of myeloid leukocyte differentiation;GO:0016049//cell growth;GO:0051169//nuclear transport	gi|311244661|ref|XP_003121530.1|/0/PREDICTED: disintegrin and metalloproteinase domain-containing protein 10-like [Sus scrofa]
gnl|UG|Ssc#S35169791	25	7.2	6	1.72	17	5.11	"Sus scrofa mRNA, clone:LVR010012A06, expressed in liver /gb=AK232283 /gi=115550048 /ug=Ssc.27329 /len=1698"	GO:0016020//membrane	GO:0004518//nuclease activity;GO:0043169//cation binding	-	gi|2852640|gb|AAC19158.1|/0/unknown [Homo sapiens]
gnl|UG|Ssc#S58311495	0	0	0	0	0	0	"PREDICTED: Sus scrofa testis specific, 10 (TSGA10), mRNA /cds=p(1,2094) /gb=XM_003124906 /gi=311252147 /ug=Ssc.34641 /len=2745"	GO:0019861//flagellum;GO:0005635//nuclear envelope	-	GO:0030030//cell projection organization;GO:0048232//male gamete generation	gi|311252148|ref|XP_003124954.1|/0/PREDICTED: testis-specific gene 10 protein-like [Sus scrofa]
gnl|UG|Ssc#S58301237	20	5.76	9	2.57	26	7.81	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase Praja-1-like (LOC100518230), mRNA /cds=p(165,1340) /gb=XM_003135159 /gi=311276439 /ug=Ssc.29803 /len=3282"	GO:0044424//intracellular part	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0009057//macromolecule catabolic process	gi|311276440|ref|XP_003135207.1|/0/PREDICTED: e3 ubiquitin-protein ligase Praja-1-like [Sus scrofa]
gnl|UG|Ssc#S48830441	2	0.58	0	0	0	0	"Sus scrofa transcriptional enhancer factor 1 isoform 1 (TEF1) mRNA, complete cds, alternatively spliced /cds=p(247,1557) /gb=EU286536 /gi=167030835 /ug=Ssc.82523 /len=1657"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0035556//intracellular signal transduction;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0048513//organ development;GO:0008283//cell proliferation	gi|183985567|gb|AAI66119.1|/0/tead1 protein [Xenopus (Silurana) tropicalis]
gnl|UG|Ssc#S46878378	52	14.97	5	1.43	14	4.21	"PREDICTED: Sus scrofa minichromosome maintenance complex component 3 (MCM3), mRNA /cds=p(9,2435) /gb=XM_001924813 /gi=311260585 /ug=Ssc.44027 /len=2941"	GO:0005815//microtubule organizing center;GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0016462//pyrophosphatase activity;GO:0032559	GO:0007050//cell cycle arrest;GO:0006261//DNA-dependent DNA replication;GO:0051320;GO:0010467//gene expression	gi|194039474|ref|XP_001924848.1|/0/PREDICTED: DNA replication licensing factor MCM3 [Sus scrofa]
gnl|UG|Ssc#S55326975	38	10.94	129	36.87	60	18.03	"Sus scrofa mRNA, clone:OVR010074F12, expressed in ovary /gb=AK347676 /gi=288777851 /ug=Ssc.4519 /len=1491"	GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0005198//structural molecule activity	GO:0042254//ribosome biogenesis;GO:0006412//translation	gi|114586294|ref|XP_001135032.1|/8.25413e-66/PREDICTED: similar to Ribosomal protein L14 [Pan troglodytes]
gnl|UG|Ssc#S55322056	14	4.03	12	3.43	9	2.7	"Sus scrofa mRNA, clone:TCH010093D09, expressed in trachea /gb=AK351088 /gi=288782816 /ug=Ssc.58139 /len=2152"	GO:0031982//vesicle;GO:0044421//extracellular region part	GO:0070696;GO:0005539//glycosaminoglycan binding	GO:0048048//embryonic eye morphogenesis;GO:0048704//embryonic skeletal system morphogenesis;GO:0061138;GO:0001704//formation of primary germ layer;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0048858//cell projection morphogenesis;GO:0043405//regulation of MAP kinase activity;GO:0060688//regulation of morphogenesis of a branching structure;GO:0035295//tube development;GO:0030282//bone mineralization;GO:0033365//protein localization to organelle;GO:0072075;GO:0032583//regulation of gene-specific transcription;GO:0042476//odontogenesis;GO:0000904//cell morphogenesis involved in differentiation;GO:0001934//positive regulation of protein phosphorylation;GO:0045597//positive regulation of cell differentiation;GO:0006935//chemotaxis;GO:0043066//negative regulation of apoptosis;GO:0043627//response to estrogen stimulus;GO:0072076//nephrogenic mesenchyme development;GO:0007088//regulation of mitosis;GO:0008285//negative regulation of cell proliferation;GO:0009755//hormone-mediated signaling pathway;GO:0035108//limb morphogenesis;GO:0033273//response to vitamin;GO:0007431//salivary gland development;GO:0008593//regulation of Notch signaling pathway;GO:0010721//negative regulation of cell development	gi|147223334|emb|CAN13248.1|/0/bone morphogenetic protein 7 (osteogenic protein 1) [Sus scrofa]
gnl|UG|Ssc#S58308598	46	13.24	24	6.86	22	6.61	"PREDICTED: Sus scrofa Ras-related GTP binding C (RRAGC), mRNA /cds=p(114,1313) /gb=XM_003127801 /gi=311258921 /ug=Ssc.26059 /len=2688"	GO:0000323//lytic vacuole	GO:0017111//nucleoside-triphosphatase activity;GO:0046872//metal ion binding;GO:0032561;GO:0046983//protein dimerization activity	GO:0009967//positive regulation of signal transduction;GO:0012501//programmed cell death;GO:0006396//RNA processing;GO:0035556//intracellular signal transduction;GO:0040007//growth;GO:0009207;GO:0043200//response to amino acid stimulus;GO:0008104//protein localization	gi|311258922|ref|XP_003127849.1|/0/PREDICTED: ras-related GTP-binding protein C-like [Sus scrofa]
gnl|UG|Ssc#S55326352	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10121E04, expressed in ovary /gb=AK348299 /gi=288778474 /ug=Ssc.1400 /len=1502"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0009311//oligosaccharide metabolic process;GO:0006487//protein N-linked glycosylation	gi|113205916|ref|NP_001038084.1|/2.80239e-114/mannose-P-dolichol utilization defect 1 [Sus scrofa]
gnl|UG|Ssc#S58311311	96	27.64	160	45.74	101	30.35	"PREDICTED: Sus scrofa aftiphilin (AFTPH), mRNA /cds=p(207,3014) /gb=XM_003125090 /gi=311252521 /ug=Ssc.54601 /len=4008"	GO:0030130//clathrin coat of trans-Golgi network vesicle;GO:0031981//nuclear lumen	GO:0005515//protein binding	GO:0006810//transport	gi|311252522|ref|XP_003125138.1|/0/PREDICTED: aftiphilin-like [Sus scrofa]
gnl|UG|Ssc#S35168455	10	2.88	5	1.43	5	1.5	"Sus scrofa mRNA, clone:LVRM10002D10, expressed in liver /gb=AK232668 /gi=115551235 /ug=Ssc.48844 /len=1468"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0000785//chromatin	GO:0003723//RNA binding;GO:0042393//histone binding;GO:0019787//small conjugating protein ligase activity	"GO:0016458//gene silencing;GO:0016567//protein ubiquitination;GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|311266697|ref|XP_003131208.1|/6.62772e-161/PREDICTED: chromobox protein homolog 8-like [Sus scrofa]
gnl|UG|Ssc#S35165328	6	1.73	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10141E08, expressed in liver /gb=AK233408 /gi=115554398 /ug=Ssc.81599 /len=2966"	GO:0042598//vesicular fraction;GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0004497//monooxygenase activity;GO:0050662//coenzyme binding	GO:0006694//steroid biosynthetic process;GO:0044237//cellular metabolic process;GO:0008203//cholesterol metabolic process;GO:0042221//response to chemical stimulus	gi|155369756|ref|NP_001094496.1|/0/squalene monooxygenase [Sus scrofa]
gnl|UG|Ssc#S58303644	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa uncharacterized protein C21orf59-like (LOC100524957), mRNA /cds=p(589,1461) /gb=XM_003132752 /gi=311270182 /ug=Ssc.12177 /len=1880"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	-	-	gi|311270183|ref|XP_003132800.1|/1.70561e-159/PREDICTED: uncharacterized protein C21orf59-like [Sus scrofa]
gnl|UG|Ssc#S35173397	0	0	0	0	0	0	"Sus scrofa mRNA, clone:AMP010069A12, expressed in alveolar macrophage /gb=AK230957 /gi=115546438 /ug=Ssc.6910 /len=2154"	GO:0043234//protein complex;GO:0044424//intracellular part	"GO:0043021//ribonucleoprotein binding;GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation;GO:0042254//ribosome biogenesis;GO:0006984//ER-nucleus signaling pathway;GO:0006464//protein modification process	gi|73990399|ref|XP_534306.2|/0/PREDICTED: similar to CDA02 protein isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58311475	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa eukaryotic translation initiation factor 2-alpha kinase 3 (EIF2AK3), mRNA /cds=p(1,3351) /gb=XM_003124925 /gi=311252188 /ug=Ssc.30321 /len=4356"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0031090//organelle membrane	GO:0005515//protein binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559	GO:0006984//ER-nucleus signaling pathway;GO:0002062//chondrocyte differentiation;GO:0031016//pancreas development;GO:0031641//regulation of myelination;GO:0001503//ossification;GO:0032055//negative regulation of translation in response to stress;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006996//organelle organization;GO:0051259//protein oligomerization;GO:0006468//protein phosphorylation;GO:0006915//apoptosis;GO:0030072//peptide hormone secretion;GO:0019932//second-messenger-mediated signaling	gi|311252189|ref|XP_003124973.1|/0/PREDICTED: eukaryotic translation initiation factor 2-alpha kinase 3-like [Sus scrofa]
gnl|UG|Ssc#S55323497	13	3.74	13	3.72	14	4.21	"Sus scrofa mRNA, clone:AMP010098E11, expressed in alveolar macrophages /gb=AK343984 /gi=288781375 /ug=Ssc.55475 /len=1645"	-	GO:0005488//binding	-	gi|311264483|ref|XP_003130189.1|/0/PREDICTED: LOW QUALITY PROTEIN: UPF0712 protein C7orf64-like [Sus scrofa]
gnl|UG|Ssc#S55319784	362	104.22	470	134.35	449	134.94	"Sus scrofa mRNA, clone:THY010119C05, expressed in thymus /gb=AK351981 /gi=288785100 /ug=Ssc.54093 /len=1232"	GO:0043234//protein complex;GO:0042598//vesicular fraction;GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding;GO:0005515//protein binding"	GO:0006413//translational initiation	gi|297683508|ref|XP_002819420.1|/3.38478e-152/PREDICTED: eukaryotic translation initiation factor 3 subunit H-like isoform 2 [Pongo abelii]
gnl|UG|Ssc#S35168707	5	1.44	2	0.57	7	2.1	"Sus scrofa mRNA, clone:THY010036C08, expressed in thymus /gb=AK238844 /gi=115550983 /ug=Ssc.25238 /len=1728"	GO:0044427;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0005515//protein binding;GO:0032559	GO:0008283//cell proliferation;GO:0000070//mitotic sister chromatid segregation	gi|73993417|ref|XP_543139.2|/0/PREDICTED: similar to androgen-induced prostate proliferative shutoff associated protein isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58309304	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa zinc finger protein 845-like (LOC100511881), mRNA /cds=p(153,2831) /gb=XM_003127095 /gi=311257480 /ug=Ssc.5517 /len=3455"	-	-	-	gi|311257481|ref|XP_003127143.1|/0/PREDICTED: zinc finger protein 845-like [Sus scrofa]
gnl|UG|Ssc#S26733695	7	2.02	0	0	0	0	"AJ944677 CSEQRAN17 Sus scrofa cDNA clone C0007308f01 5', mRNA sequence /clone=C0007308f01 /clone_end=5' /gb=AJ944677 /gi=74361419 /ug=Ssc.46630 /len=805"	-	-	-	gi|55732018|emb|CAH92716.1|/3.61904e-14/hypothetical protein [Pongo abelii]
gnl|UG|Ssc#S58308831	31	8.93	3	0.86	21	6.31	"PREDICTED: Sus scrofa exosome component 10-like (LOC100511264), mRNA /cds=p(32,2311) /gb=XM_003127583 /gi=311258441 /ug=Ssc.23524 /len=2420"	GO:0000178//exosome (RNase complex);GO:0031981//nuclear lumen;GO:0000785//chromatin	GO:0003676//nucleic acid binding;GO:0004672//protein kinase activity;GO:0005515//protein binding;GO:0004527//exonuclease activity	GO:0016075//rRNA catabolic process;GO:0006364//rRNA processing;GO:0071030//nuclear mRNA surveillance of spliceosomal pre-mRNA splicing	gi|311258442|ref|XP_003127631.1|/0/PREDICTED: exosome component 10-like [Sus scrofa]
gnl|UG|Ssc#S58313821	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa integral membrane protein GPR137-like (LOC100524971), partial mRNA /cds=p(1,1320) /gb=XM_003122592 /gi=311247394 /ug=Ssc.50376 /len=1629"	GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity	-	"gi|311247395|ref|XP_003122640.1|/2.78037e-179/PREDICTED: integral membrane protein GPR137-like, partial [Sus scrofa]"
gnl|UG|Ssc#S46881210	8	2.3	11	3.14	6	1.8	"PREDICTED: Sus scrofa ring finger and CCCH-type domains 2 (RC3H2), mRNA /cds=p(199,3789) /gb=XM_001927838 /gi=311246414 /ug=Ssc.37405 /len=3789"	GO:0044444//cytoplasmic part;GO:0005626//insoluble fraction	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311246415|ref|XP_001927873.2|/0/PREDICTED: LOW QUALITY PROTEIN: RING finger and CCCH-type zinc finger domain-containing protein 2 [Sus scrofa]
gnl|UG|Ssc#S6090481	2	0.58	2	0.57	2	0.6	"Sus scrofa keratinocyte growth factor mRNA, partial cds /cds=p(107,690) /gb=AF217463 /gi=6716757 /ug=Ssc.15923 /len=690"	-	-	-	-
gnl|UG|Ssc#S18357511	15	4.32	7	2	12	3.61	"908627 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK452952 /gi=40800166 /ug=Ssc.23933 /len=828"	-	-	-	-
gnl|UG|Ssc#S23763041	34	9.79	4	1.14	28	8.41	"1120695 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN120660 /gi=59814939 /ug=Ssc.78700 /len=680"	"GO:0033177//proton-transporting two-sector ATPase complex, proton-transporting domain;GO:0005743//mitochondrial inner membrane"	GO:0015077//monovalent inorganic cation transmembrane transporter activity	GO:0034220//ion transmembrane transport;GO:0015992//proton transport;GO:0010033//response to organic substance	gi|117660743|gb|ABK55635.1|/8.14849e-51/mitochondrial ATP5G2 [Sus scrofa]
gnl|UG|Ssc#S46876462	45	12.96	46	13.15	13	3.91	"PREDICTED: Sus scrofa cell division cycle 45 homolog (S. cerevisiae) (CDC45), mRNA /cds=p(121,1824) /gb=XM_001929624 /gi=311271094 /ug=Ssc.30533 /len=1960"	GO:0005815//microtubule organizing center;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0007050//cell cycle arrest;GO:0006261//DNA-dependent DNA replication;GO:0051320;GO:0007165//signal transduction;GO:0000082//G1/S transition of mitotic cell cycle	gi|194043452|ref|XP_001929659.1|/0/PREDICTED: cell division control protein 45 homolog [Sus scrofa]
gnl|UG|Ssc#S40119209	13	3.74	10	2.86	4	1.2	"rfty520b_i10.y1 fty Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW214116 /gi=182615007 /ug=Ssc.78651 /len=653"	-	-	-	-
gnl|UG|Ssc#S34507594	80	23.03	59	16.87	99	29.75	"DB815791 full-length enriched swine cDNA library, adult periphral blood mononuclear cell Sus scrofa cDNA 3', mRNA sequence /clone=PBL010025F10 /clone_end=3' /gb=DB815791 /gi=112753951 /ug=Ssc.72023 /len=779"	-	-	-	gi|149054774|gb|EDM06591.1|/9.84652e-27/rCG35060 [Rattus norvegicus]
gnl|UG|Ssc#S55266963	5	1.44	2	0.57	11	3.31	"FS669408 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10073E11 5', mRNA sequence /clone=HTMT10073E11 /clone_end=5' /gb=FS669408 /gi=288265260 /ug=Ssc.91524 /len=803"	GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0005515//protein binding	GO:0007264//small GTPase mediated signal transduction;GO:0007010//cytoskeleton organization;GO:0009207;GO:0048513//organ development	gi|148236813|ref|NP_001091587.1|/7.39926e-103/ras-related protein M-Ras [Bos taurus]
gnl|UG|Ssc#S35167713	0	0	0	0	0	0	"Sus scrofa mRNA, clone:THY010078F02, expressed in thymus /gb=AK239219 /gi=115552026 /ug=Ssc.44297 /len=2462"	GO:0043231//intracellular membrane-bounded organelle	GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation	gi|311248011|ref|XP_003122924.1|/0/PREDICTED: f-box only protein 3-like [Sus scrofa]
gnl|UG|Ssc#S46878288	8	2.3	13	3.72	3	0.9	"PREDICTED: Sus scrofa zinc finger protein 710 (ZNF710), mRNA /cds=p(1,2346) /gb=XM_001928181 /gi=311260723 /ug=Ssc.71936 /len=2346"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|311260724|ref|XP_001928216.2|/0/PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 710 [Sus scrofa]
gnl|UG|Ssc#S29968677	152	43.76	90	25.73	87	26.15	"PDUts1016F12 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1016F12 5', mRNA sequence /clone=PDUts1016F12 /clone_end=5' /gb=CV865335 /gi=84119295 /ug=Ssc.94926 /len=549"	-	-	-	-
gnl|UG|Ssc#S55321733	5	1.44	0	0	3	0.9	"Sus scrofa mRNA, clone:ITT010020G02, expressed in small intestine /gb=AK344952 /gi=288783139 /ug=Ssc.11673 /len=1561"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0019787//small conjugating protein ligase activity;GO:0032559	GO:0000209//protein polyubiquitination;GO:0016574//histone ubiquitination;GO:0006513//protein monoubiquitination	gi|109692276|gb|ABG37966.1|/3.46275e-101/unknown [Rattus norvegicus]
gnl|UG|Ssc#S32933969	11	3.17	2	0.57	12	3.61	"Sus scrofa mitochondrial NAD+isocitrate dehydrogenase 3 beta variant 2 (IDH3B) mRNA, complete cds, alternatively spliced; nuclear gene for mitochondrial product /cds=p(18,1175) /gb=DQ507860 /gi=145411342 /ug=Ssc.3464 /len=1540"	GO:0030062//mitochondrial tricarboxylic acid cycle enzyme complex	GO:0046872//metal ion binding;GO:0004448//isocitrate dehydrogenase activity;GO:0000166//nucleotide binding	GO:0043648//dicarboxylic acid metabolic process;GO:0050953//sensory perception of light stimulus;GO:0019674//NAD metabolic process;GO:0009060//aerobic respiration	"gi|113205754|ref|NP_001038040.1|/0/isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S58303844	211	60.75	135	38.59	190	57.1	"PREDICTED: Sus scrofa fragile X mental retardation syndrome-related protein 1-like, transcript variant 1 (LOC100525539), mRNA /cds=p(19,1884) /gb=XM_003132553 /gi=311269690 /ug=Ssc.24570 /len=3193"	GO:0030016//myofibril;GO:0031981//nuclear lumen;GO:0030529//ribonucleoprotein complex	GO:0003729//mRNA binding	GO:0006412//translation;GO:0012501//programmed cell death;GO:0048869;GO:0048513//organ development	gi|311269691|ref|XP_003132601.1|/0/PREDICTED: fragile X mental retardation syndrome-related protein 1-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58313248	51	14.68	64	18.29	44	13.22	"PREDICTED: Sus scrofa trafficking protein particle complex subunit 5-like, transcript variant 1 (LOC100524729), mRNA /cds=p(66,632) /gb=XM_003123147 /gi=311248557 /ug=Ssc.19477 /len=671"	GO:0005801//cis-Golgi network	GO:0009975//cyclase activity;GO:0005506//iron ion binding	GO:0006164//purine nucleotide biosynthetic process;GO:0006810//transport	gi|297703343|ref|XP_002828602.1|/5.48764e-92/PREDICTED: trafficking protein particle complex subunit 5-like isoform 1 [Pongo abelii]
gnl|UG|Ssc#S35168946	15	4.32	2	0.57	7	2.1	"Sus scrofa mRNA, clone:OVRM10125E03, expressed in ovary /gb=AK235919 /gi=115550844 /ug=Ssc.27889 /len=1819"	-	GO:0003676//nucleic acid binding	-	gi|311268897|ref|XP_003132253.1|/6.94665e-142/PREDICTED: coiled-coil domain-containing protein 71-like [Sus scrofa]
gnl|UG|Ssc#S58306144	35	10.08	21	6	38	11.42	"PREDICTED: Sus scrofa RAD50 interactor 1 (RINT1), mRNA /cds=p(55,2433) /gb=XM_003130254 /gi=311264717 /ug=Ssc.13573 /len=2732"	GO:0031090//organelle membrane;GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0000077//DNA damage checkpoint;GO:0006810//transport	gi|311264718|ref|XP_003130302.1|/0/PREDICTED: RAD50-interacting protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58309688	5	1.44	18	5.15	3	0.9	"PREDICTED: Sus scrofa vezatin-like (LOC100517281), mRNA /cds=p(1,813) /gb=XM_003126712 /gi=311256677 /ug=Ssc.10204 /len=1385"	-	-	-	gi|311256678|ref|XP_003126760.1|/1.28279e-142/PREDICTED: vezatin-like [Sus scrofa]
gnl|UG|Ssc#S18546762	53	15.26	23	6.57	67	20.14	"BX915413 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0032.o.14 5prim, mRNA sequence /clone=scan0032.o.14 /clone_end=5' /gb=BX915413 /gi=90242967 /ug=Ssc.42138 /len=891"	-	"GO:0016763//transferase activity, transferring pentosyl groups;GO:0046914//transition metal ion binding"	GO:0009887//organ morphogenesis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0048534;GO:0030154//cell differentiation;GO:0060537//muscle tissue development;GO:0008202//steroid metabolic process;GO:0008406//gonad development;GO:0006464//protein modification process	gi|297672342|ref|XP_002814262.1|/4.73435e-72/PREDICTED: TCDD-inducible poly [ADP-ribose] polymerase-like isoform 1 [Pongo abelii]
gnl|UG|Ssc#S58304037	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa TatD DNase domain containing 2 (TATDN2), mRNA /cds=p(1,2226) /gb=XM_003132363 /gi=311269261 /ug=Ssc.3145 /len=2576"	-	-	-	-
gnl|UG|Ssc#S55325441	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:PTG010024D04, expressed in pituitary gland /gb=AK349210 /gi=288779385 /ug=Ssc.39134 /len=2093"	GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|194212435|ref|XP_001492518.2|/0/PREDICTED: similar to zinc finger protein 77 (pT1) [Equus caballus]
gnl|UG|Ssc#S35166002	27	7.77	42	12.01	5	1.5	"Sus scrofa mRNA, clone:UTR010010D03, expressed in uterus /gb=AK239911 /gi=115553724 /ug=Ssc.4546 /len=1071"	-	GO:0005488//binding;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation	"gi|158431502|pdb|2Z6O|A/1.65929e-96/Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1"
gnl|UG|Ssc#S58304676	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa peroxisome assembly protein 12-like (LOC100517306), mRNA /cds=p(511,1590) /gb=XM_003131719 /gi=311267850 /ug=Ssc.5736 /len=2481"	GO:0031231	GO:0046914//transition metal ion binding;GO:0005515//protein binding	GO:0006625//protein targeting to peroxisome	gi|90076322|dbj|BAE87841.1|/0/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S58306010	12	3.45	2	0.57	5	1.5	"PREDICTED: Sus scrofa hemicentin-1-like (LOC100520323), mRNA /cds=p(1,2532) /gb=XM_003130391 /gi=311264993 /ug=Ssc.87012 /len=2532"	-	-	-	gi|311264994|ref|XP_003130439.1|/0/PREDICTED: hemicentin-1-like [Sus scrofa]
gnl|UG|Ssc#S58308562	4	1.15	4	1.14	0	0	"PREDICTED: Sus scrofa ankyrin repeat domain-containing protein 12-like (LOC100519490), mRNA /cds=p(52,6219) /gb=XM_003127832 /gi=311258993 /ug=Ssc.24121 /len=7377"	-	-	-	gi|311258994|ref|XP_003127880.1|/0/PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 12-like [Sus scrofa]
gnl|UG|Ssc#S58315052	9	2.59	0	0	2	0.6	"PREDICTED: Sus scrofa cell division cycle 40 homolog (S. cerevisiae) (CDC40), mRNA /cds=p(50,1789) /gb=XM_003121352 /gi=311244305 /ug=Ssc.13310 /len=3662"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	-	"GO:0000377;GO:0006405//RNA export from nucleus;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	gi|311244306|ref|XP_003121400.1|/0/PREDICTED: pre-mRNA-processing factor 17-like [Sus scrofa]
gnl|UG|Ssc#S58308248	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa GDP-mannose 4,6-dehydratase (GMDS), mRNA /cds=p(1,1053) /gb=XM_003128147 /gi=311259636 /ug=Ssc.28123 /len=1608"	GO:0044424//intracellular part	GO:0048037//cofactor binding;GO:0016836//hydro-lyase activity	GO:0016337//cell-cell adhesion;GO:0006013//mannose metabolic process;GO:0042350//GDP-L-fucose biosynthetic process	"gi|311259637|ref|XP_003128195.1|/0/PREDICTED: GDP-mannose 4,6 dehydratase-like [Sus scrofa]"
gnl|UG|Ssc#S16833765	0	0	3	0.86	2	0.6	"Sus scrofa spastin (SPG4) mRNA, complete cds /cds=p(252,1844) /gb=AF540879 /gi=33332016 /ug=Ssc.19685 /len=2231"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0015630//microtubule cytoskeleton;GO:0044444//cytoplasmic part	"GO:0042623//ATPase activity, coupled;GO:0015631//tubulin binding;GO:0032559"	GO:0048869;GO:0048731;GO:0051259//protein oligomerization;GO:0000920//cytokinetic cell separation;GO:0000226//microtubule cytoskeleton organization;GO:0009207;GO:0048193//Golgi vesicle transport	gi|226694318|sp|Q719N1.2|SPAST_PIG/0/RecName: Full=Spastin
gnl|UG|Ssc#S58315158	17	4.89	9	2.57	9	2.7	"PREDICTED: Sus scrofa transcription cofactor vestigial-like protein 2-like (LOC100520814), mRNA /cds=p(199,1158) /gb=XM_003121243 /gi=311244053 /ug=Ssc.60524 /len=1158"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding;GO:0003712//transcription cofactor activity	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0014706//striated muscle tissue development	gi|311244054|ref|XP_003121291.1|/6.16743e-100/PREDICTED: transcription cofactor vestigial-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S46878436	117	33.68	24	6.86	151	45.38	"PREDICTED: Sus scrofa Yip1 domain family, member 3 (YIPF3), mRNA /cds=p(167,1210) /gb=XM_001929443 /gi=311260487 /ug=Ssc.20600 /len=1544"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0031224//intrinsic to membrane	-	GO:0048869	"gi|148691538|gb|EDL23485.1|/1.97791e-179/Yip1 domain family, member 3, isoform CRA_a [Mus musculus]"
gnl|UG|Ssc#S35170363	17	4.89	3	0.86	6	1.8	"Sus scrofa mRNA, clone:OVRM10087F07, expressed in ovary /gb=AK235498 /gi=115549476 /ug=Ssc.11661 /len=1602"	GO:0005626//insoluble fraction;GO:0008287//protein serine/threonine phosphatase complex;GO:0031966//mitochondrial membrane;GO:0032155;GO:0000776//kinetochore;GO:0030425//dendrite;GO:0035097//histone methyltransferase complex;GO:0016604//nuclear body	GO:0004721//phosphoprotein phosphatase activity;GO:0043169//cation binding;GO:0019900//kinase binding	GO:0006073//cellular glucan metabolic process;GO:0006796//phosphate metabolic process;GO:0007067//mitosis;GO:0006464//protein modification process;GO:0032386//regulation of intracellular transport;GO:0006641//triglyceride metabolic process	"gi|119618344|gb|EAW97938.1|/0/protein phosphatase 1, catalytic subunit, gamma isoform, isoform CRA_a [Homo sapiens] "
gnl|UG|Ssc#S35166447	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:LVRM10079G08, expressed in liver /gb=AK233089 /gi=115553291 /ug=Ssc.32266 /len=3198"	GO:0016020//membrane	GO:0004871//signal transducer activity	GO:0023052//signaling;GO:0016192//vesicle-mediated transport	gi|311255257|ref|XP_003126151.1|/1.28782e-43/PREDICTED: protein LMBR1L-like [Sus scrofa]
gnl|UG|Ssc#S58308572	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa palmitoyl-protein thioesterase 1-like (LOC100517533), mRNA /cds=p(47,967) /gb=XM_003127823 /gi=311258973 /ug=Ssc.55119 /len=2235"	GO:0043005//neuron projection;GO:0005626//insoluble fraction;GO:0044297//cell body;GO:0000323//lytic vacuole;GO:0044425//membrane part;GO:0044421//extracellular region part;GO:0030136//clathrin-coated vesicle	GO:0016291//acyl-CoA thioesterase activity	"GO:0000737//DNA catabolic process, endonucleolytic;GO:0007626//locomotory behavior;GO:0007417//central nervous system development;GO:0007612//learning;GO:0006665//sphingolipid metabolic process;GO:0050953//sensory perception of light stimulus;GO:0048468//cell development;GO:0035601//protein deacylation;GO:0030163//protein catabolic process;GO:0001505//regulation of neurotransmitter levels;GO:0045807//positive regulation of endocytosis;GO:0016049//cell growth;GO:0010517//regulation of phospholipase activity;GO:0043066//negative regulation of apoptosis"	gi|311258974|ref|XP_003127871.1|/3.13057e-171/PREDICTED: palmitoyl-protein thioesterase 1-like [Sus scrofa]
gnl|UG|Ssc#S46876346	15	4.32	6	1.72	9	2.7	"PREDICTED: Sus scrofa PERQ amino acid-rich with GYF domain-containing protein 2-like (LOC100155005), partial mRNA /cds=p(1,1122) /gb=XM_001925487 /gi=311273255 /ug=Ssc.47903 /len=3131"	-	GO:0005488//binding	-	gi|73993985|ref|XP_850616.1|/5.49925e-128/PREDICTED: similar to trinucleotide repeat containing 15 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S40474943	0	0	0	0	6	1.8	"rspc014_o19.y1 spc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW569549 /gi=183149625 /ug=Ssc.68689 /len=557"	-	-	-	-
gnl|UG|Ssc#S16763384	15	4.32	3	0.86	11	3.31	"827281 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CF360979 /gi=34159219 /ug=Ssc.61828 /len=678"	-	-	-	-
gnl|UG|Ssc#S58307708	2	0.58	5	1.43	10	3.01	"PREDICTED: Sus scrofa potassium channel, subfamily K, member 13 (KCNK13), mRNA /cds=p(1,1233) /gb=XM_003128684 /gi=311261438 /ug=Ssc.94061 /len=1411"	GO:0031224//intrinsic to membrane	GO:0005261//cation channel activity	GO:0034220//ion transmembrane transport;GO:0030001//metal ion transport	gi|311261439|ref|XP_003128732.1|/0/PREDICTED: potassium channel subfamily K member 13-like [Sus scrofa]
gnl|UG|Ssc#S35172179	18	5.18	15	4.29	35	10.52	"Sus scrofa mRNA, clone:ITT010035F07, expressed in intestine /gb=AK231314 /gi=115547656 /ug=Ssc.50003 /len=2178"	GO:0043231//intracellular membrane-bounded organelle;GO:0031461//cullin-RING ubiquitin ligase complex;GO:0044444//cytoplasmic part	GO:0051219//phosphoprotein binding;GO:0019787//small conjugating protein ligase activity;GO:0016564//transcription repressor activity	GO:0007166//cell surface receptor linked signaling pathway;GO:0032583//regulation of gene-specific transcription;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0031647//regulation of protein stability;GO:0030162//regulation of proteolysis;GO:0050673//epithelial cell proliferation;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0014070//response to organic cyclic compound;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0048754//branching morphogenesis of a tube;GO:0051704;GO:0007623//circadian rhythm	gi|311271745|ref|XP_001924863.2|/0/PREDICTED: f-box/WD repeat-containing protein 1A [Sus scrofa]
gnl|UG|Ssc#S52535117	0	0	4	1.14	0	0	"Sus scrofa v-ets erythroblastosis virus E26 oncogene homolog 1 (avian) (ETS1), mRNA /cds=p(90,1547) /gb=NM_001162886 /gi=242253857 /ug=Ssc.14042 /len=2135"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0021536//diencephalon development;GO:0009605//response to external stimulus;GO:0022617//extracellular matrix disassembly;GO:0034614//cellular response to reactive oxygen species;GO:0008283//cell proliferation;GO:0043627//response to estrogen stimulus;GO:0022602//ovulation cycle process;GO:0034405//response to fluid shear stress;GO:0045639//positive regulation of myeloid cell differentiation;GO:0034097//response to cytokine stimulus;GO:0051726//regulation of cell cycle;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0012502//induction of programmed cell death;GO:0030575;GO:0045765//regulation of angiogenesis;GO:0016477//cell migration;GO:0043066//negative regulation of apoptosis	gi|242253858|ref|NP_001156358.1|/0/protein C-ets-1 [Sus scrofa]
gnl|UG|Ssc#S58310675	21	6.05	5	1.43	32	9.62	"PREDICTED: Sus scrofa ATPase, class I, type 8B, member 2 (ATP8B2), mRNA /cds=p(1,3678) /gb=XM_003125724 /gi=311254203 /ug=Ssc.29414 /len=4809"	GO:0031224//intrinsic to membrane	"GO:0042625//ATPase activity, coupled to transmembrane movement of ions;GO:0046872//metal ion binding;GO:0005548//phospholipid transporter activity;GO:0032559"	GO:0009206;GO:0006811//ion transport;GO:0006869//lipid transport;GO:0009207	gi|311254204|ref|XP_003125772.1|/0/PREDICTED: probable phospholipid-transporting ATPase ID-like [Sus scrofa]
gnl|UG|Ssc#S35431243	10	2.88	16	4.57	16	4.81	"Sus scrofa mRNA for phosphatidylcholine:ceramide cholinephosphotransferase 1 (SMS1 gene) /cds=p(307,1548) /gb=AM233751 /gi=116874722 /ug=Ssc.91630 /len=2141"	GO:0031228//intrinsic to Golgi membrane	"GO:0016780//phosphotransferase activity, for other substituted phosphate groups"	GO:0006952//defense response;GO:0006684//sphingomyelin metabolic process;GO:0006915//apoptosis;GO:0006796//phosphate metabolic process;GO:0040007//growth;GO:0034612//response to tumor necrosis factor;GO:0010467//gene expression;GO:0032496//response to lipopolysaccharide	gi|158514861|sp|A0AAS4.2|SMS1_PIG/0/RecName: Full=Phosphatidylcholine:ceramide cholinephosphotransferase 1; AltName: Full=Sphingomyelin synthase 1
gnl|UG|Ssc#S35166842	210	60.46	60	17.15	380	114.2	"Sus scrofa mRNA, clone:THY010107F05, expressed in thymus /gb=AK239491 /gi=115552897 /ug=Ssc.53698 /len=1009"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0000502//proteasome complex	GO:0004175//endopeptidase activity;GO:0005488//binding	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0002437//inflammatory response to antigenic stimulus;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator;GO:0051704"	gi|194036225|ref|XP_001929676.1|/1.1682e-149/PREDICTED: proteasome subunit beta type-4 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S6023851	3	0.86	0	0	3	0.9	"223665 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BF074958 /gi=10868469 /ti=470929096 /ug=Ssc.80170 /len=551"	-	-	-	gi|301762870|ref|XP_002916853.1|/2.7165e-20/PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55324049	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:SPL010003F03, expressed in spleen /gb=AK350159 /gi=288780823 /ug=Ssc.22450 /len=1263"	-	-	-	-
gnl|UG|Ssc#S46876596	9	2.59	14	4	8	2.4	"PREDICTED: Sus scrofa RNA-binding protein EWS-like (LOC100156911), mRNA /cds=p(671,1735) /gb=XM_001928608 /gi=311270855 /ug=Ssc.42181 /len=3479"	GO:0016604//nuclear body	GO:0005488//binding	-	"gi|148708571|gb|EDL40518.1|/4.54151e-42/mCG14699, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S35166460	5	1.44	5	1.43	4	1.2	"Sus scrofa mRNA, clone:LVRM10078B03, expressed in liver /gb=AK233076 /gi=115553278 /ug=Ssc.39033 /len=1893"	GO:0031224//intrinsic to membrane;GO:0005770//late endosome;GO:0031090//organelle membrane	"GO:0016723//oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor;GO:0046914//transition metal ion binding;GO:0050662//coenzyme binding"	GO:0012502//induction of programmed cell death;GO:0000041//transition metal ion transport;GO:0006875//cellular metal ion homeostasis;GO:0008152//metabolic process;GO:0015031//protein transport	gi|296490495|gb|DAA32608.1|/0/metalloreductase STEAP3-like [Bos taurus]
gnl|UG|Ssc#S19537034	11	3.17	0	0	13	3.91	"940245 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN153154 /gi=46167584 /ug=Ssc.43188 /len=822"	-	-	-	-
gnl|UG|Ssc#S55323477	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:BFLT10026H12, expressed in brain (frontal lobe) /gb=AK344004 /gi=288781395 /ug=Ssc.8205 /len=1580"	GO:0005801//cis-Golgi network	GO:0005515//protein binding	"GO:0048731;GO:0048193//Golgi vesicle transport;GO:0006351//transcription, DNA-dependent"	gi|301784158|ref|XP_002927490.1|/3.95657e-82/PREDICTED: trafficking protein particle complex subunit 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35173543	106	30.52	84	24.01	73	21.94	"Sus scrofa mRNA, clone:UTR010090E09, expressed in uterus /gb=AK240530 /gi=115546292 /ug=Ssc.40365 /len=1521"	-	-	-	-
gnl|UG|Ssc#S35166605	56	16.12	66	18.87	70	21.04	"Sus scrofa mRNA, clone:THY010125G12, expressed in thymus /gb=AK239720 /gi=115553134 /ug=Ssc.4801 /len=1532"	GO:0005856//cytoskeleton;GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0008092//cytoskeletal protein binding	GO:0006952//defense response;GO:0042221//response to chemical stimulus;GO:0012501//programmed cell death;GO:0006996//organelle organization	gi|73983516|ref|XP_854329.1|/4.1572e-113/PREDICTED: similar to lymphocyte-specific protein 1 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S55325666	2	0.58	0	0	9	2.7	"Sus scrofa mRNA, clone:PBL010085E04, expressed in peripheral blood mononuclear cells /gb=AK348985 /gi=288779160 /ug=Ssc.37400 /len=1741"	GO:0005740//mitochondrial envelope	-	GO:0006094//gluconeogenesis	gi|281345787|gb|EFB21371.1|/2.94769e-25/hypothetical protein PANDA_018071 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40070912	0	0	0	0	0	0	"rfat0137_i18.y1 fat Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW165819 /gi=182555043 /ug=Ssc.62670 /len=579"	-	-	-	-
gnl|UG|Ssc#S58307981	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa exportin-5-like (LOC100521098), mRNA /cds=p(185,4630) /gb=XM_003128424 /gi=311260491 /ug=Ssc.4377 /len=5307"	GO:0044444//cytoplasmic part;GO:0031981//nuclear lumen	GO:0003723//RNA binding;GO:0022892	GO:0006605//protein targeting;GO:0016458//gene silencing	gi|311260492|ref|XP_003128472.1|/0/PREDICTED: exportin-5-like [Sus scrofa]
gnl|UG|Ssc#S40473732	3	0.86	0	0	2	0.6	"rsme21_l20.y1 sme Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW568338 /gi=183114371 /ug=Ssc.92421 /len=200"	GO:0000267//cell fraction;GO:0005783//endoplasmic reticulum	GO:0004645//phosphorylase activity;GO:0030246//carbohydrate binding;GO:0048037//cofactor binding;GO:0032559	GO:0019318//hexose metabolic process;GO:0006875//cellular metal ion homeostasis;GO:0005977//glycogen metabolic process;GO:0006950//response to stress;GO:0010033//response to organic substance	gi|106073338|gb|ABF81978.1|/6.69258e-27/muscle glycogen phosphorylase [Sus scrofa]
gnl|UG|Ssc#S35170378	39	11.23	3	0.86	10	3.01	"Sus scrofa mRNA, clone:OVRM10086C09, expressed in ovary /gb=AK235483 /gi=115549461 /ug=Ssc.83655 /len=3389"	-	-	-	-
gnl|UG|Ssc#S55321819	35	10.08	10	2.86	53	15.93	"Sus scrofa mRNA, clone:ITT010002A07, expressed in small intestine /gb=AK344866 /gi=288783053 /ug=Ssc.11316 /len=2043"	-	-	-	-
gnl|UG|Ssc#S58313429	21	6.05	3	0.86	7	2.1	"PREDICTED: Sus scrofa alpha-parvin-like (LOC100518536), mRNA /cds=p(1,858) /gb=XM_003122972 /gi=311248190 /ug=Ssc.43877 /len=1035"	GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle;GO:0005856//cytoskeleton;GO:0031252//cell leading edge;GO:0005924//cell-substrate adherens junction;GO:0044444//cytoplasmic part	GO:0008092//cytoskeletal protein binding	GO:0048858//cell projection morphogenesis;GO:0051259//protein oligomerization;GO:0007010//cytoskeleton organization;GO:0034330	gi|311248191|ref|XP_003123020.1|/3.1084e-161/PREDICTED: alpha-parvin-like [Sus scrofa]
gnl|UG|Ssc#S55304360	27	7.77	4	1.14	12	3.61	"FS697758 full-length enriched swine cDNA library, adult prostate Sus scrofa cDNA clone PST010010B09 5', mRNA sequence /clone=PST010010B09 /clone_end=5' /gb=FS697758 /gi=288310515 /ug=Ssc.84209 /len=919"	GO:0030120//vesicle coat	GO:0005488//binding;GO:0016740//transferase activity	GO:0048200;GO:0015031//protein transport	gi|301764543|ref|XP_002917686.1|/5.94917e-142/PREDICTED: coatomer subunit gamma-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58313056	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, transcript variant 1 (CACNA1A), mRNA /cds=p(1,5547) /gb=XM_003123343 /gi=311248947 /ug=Ssc.79069 /len=5547"	-	-	-	-
gnl|UG|Ssc#S35172676	2637	759.21	982	280.7	2821	847.79	"Sus scrofa mRNA, clone:ITT010018D11, expressed in intestine /gb=AK231214 /gi=115547159 /ug=Ssc.53823 /len=1065"	GO:0015934//large ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|311258211|ref|XP_003127492.1|/2.65023e-62/PREDICTED: 60S ribosomal protein L28-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S40060004	5	1.44	9	2.57	2	0.6	"reye1614b_k4.y1 eye Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW154911 /gi=182609856 /ug=Ssc.71289 /len=418"	-	-	-	-
gnl|UG|Ssc#S46880325	11	3.17	17	4.86	15	4.51	"PREDICTED: Sus scrofa tRNA methyltransferase 11 homolog (S. cerevisiae) (TRMT11), mRNA /cds=p(1,1383) /gb=XM_001928661 /gi=311243988 /ug=Ssc.20837 /len=1823"	-	GO:0016741;GO:0005488//binding	GO:0006730//one-carbon metabolic process;GO:0006399//tRNA metabolic process	gi|194035431|ref|XP_001928696.1|/0/PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Sus scrofa]
gnl|UG|Ssc#S58312645	11	3.17	24	6.86	3	0.9	"PREDICTED: Sus scrofa ras-specific guanine nucleotide-releasing factor 2-like (LOC100515363), partial mRNA /cds=p(1,3525) /gb=XM_003123763 /gi=311249784 /ug=Ssc.74725 /len=3525"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0031090//organelle membrane	GO:0005488//binding;GO:0005088//Ras guanyl-nucleotide exchange factor activity	GO:0006917//induction of apoptosis;GO:0007267//cell-cell signaling;GO:0019222//regulation of metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009966//regulation of signal transduction;GO:0007266//Rho protein signal transduction	"gi|311249785|ref|XP_003123811.1|/0/PREDICTED: LOW QUALITY PROTEIN: ras-specific guanine nucleotide-releasing factor 2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S39890352	22	6.33	21	6	130	39.07	"rcmu40_j3.y1 cmu Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV985427 /gi=178638019 /ug=Ssc.90539 /len=439"	-	GO:0016881//acid-amino acid ligase activity	GO:0016567//protein ubiquitination	gi|301755284|ref|XP_002913501.1|/6.27482e-06/PREDICTED: ubiquitin-conjugating enzyme E2 H-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35166860	9	2.59	3	0.86	0	0	"Sus scrofa mRNA, clone:THY010106E02, expressed in thymus /gb=AK239473 /gi=115552879 /ug=Ssc.7111 /len=1700"	GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0016728	GO:0006259//DNA metabolic process;GO:0009165//nucleotide biosynthetic process;GO:0051262//protein tetramerization;GO:0009132//nucleoside diphosphate metabolic process;GO:0000082//G1/S transition of mitotic cell cycle;GO:0008283//cell proliferation	gi|296482361|gb|DAA24476.1|/0/ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus]
gnl|UG|Ssc#S18269437	3	0.86	2	0.57	3	0.9	"BP165928 full-length enriched swine cDNA library, adult thymus Sus scrofa cDNA clone THY010032F04 5', mRNA sequence /clone=THY010032F04 /clone_end=5' /gb=BP165928 /gi=40415401 /ug=Ssc.19483 /len=873"	GO:0019866//organelle inner membrane;GO:0031231	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding	GO:0065008;GO:0048856//anatomical structure development;GO:0050954//sensory perception of mechanical stimulus;GO:0000302//response to reactive oxygen species;GO:0007005//mitochondrion organization;GO:0010467//gene expression;GO:0044237//cellular metabolic process;GO:0030198//extracellular matrix organization	"gi|194220876|ref|XP_001502409.2|/2.37112e-72/PREDICTED: general transcription factor IIIC, polypeptide 2, beta 110kDa [Equus caballus]"
gnl|UG|Ssc#S19547609	12	3.45	21	6	17	5.11	"953338 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN163776 /gi=46178206 /ug=Ssc.58075 /len=871"	-	-	-	-
gnl|UG|Ssc#S55319862	10	2.88	13	3.72	3	0.9	"Sus scrofa mRNA, clone:THY010107B05, expressed in thymus /gb=AK351903 /gi=288785022 /ug=Ssc.9100 /len=1218"	GO:0043231//intracellular membrane-bounded organelle	GO:0043566//structure-specific DNA binding;GO:0003723//RNA binding;GO:0005515//protein binding	GO:0006259//DNA metabolic process	gi|73984164|ref|XP_540996.2|/4.84444e-119/PREDICTED: similar to translin [Canis familiaris]
gnl|UG|Ssc#S58310007	3	0.86	31	8.86	7	2.1	"PREDICTED: Sus scrofa oxysterol binding protein-like 8 (OSBPL8), mRNA /cds=p(1,1188) /gb=XM_003126393 /gi=311255960 /ug=Ssc.85813 /len=1188"	-	GO:0005488//binding	GO:0051234//establishment of localization;GO:0010876	gi|311255961|ref|XP_003126441.1|/0/PREDICTED: oxysterol-binding protein-related protein 8-like [Sus scrofa]
gnl|UG|Ssc#S39892368	1186	341.46	1177	336.44	1817	546.06	"rcmu37_l24.y1 cmu Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV987443 /gi=178496955 /ug=Ssc.19487 /len=701"	GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex	GO:0005488//binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development;GO:0033189//response to vitamin A	gi|311273831|ref|XP_003134062.1|/1.13535e-58/PREDICTED: 60S ribosomal protein L36a-like [Sus scrofa]
gnl|UG|Ssc#S58306167	8	2.3	0	0	10	3.01	"PREDICTED: Sus scrofa putative homeodomain transcription factor 2 (PHTF2), mRNA /cds=p(1,2424) /gb=XM_003130246 /gi=311264670 /ug=Ssc.62384 /len=2424"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|311264671|ref|XP_003130294.1|/0/PREDICTED: putative homeodomain transcription factor 2-like [Sus scrofa]
gnl|UG|Ssc#S58311694	69	19.87	89	25.44	70	21.04	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase CHIP-like (LOC100511251), mRNA /cds=p(58,969) /gb=XM_003124708 /gi=311251735 /ug=Ssc.78958 /len=1231"	GO:0016234//inclusion body;GO:0043234//protein complex	GO:0031072//heat shock protein binding;GO:0019904//protein domain specific binding;GO:0004842//ubiquitin-protein ligase activity;GO:0042802//identical protein binding;GO:0019899//enzyme binding	GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0006511//ubiquitin-dependent protein catabolic process;GO:0016567//protein ubiquitination;GO:0031334//positive regulation of protein complex assembly;GO:0031331;GO:0033554//cellular response to stress;GO:0008211//glucocorticoid metabolic process	gi|311251736|ref|XP_003124756.1|/2.84552e-175/PREDICTED: e3 ubiquitin-protein ligase CHIP-like [Sus scrofa]
gnl|UG|Ssc#S55319659	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10108A08, expressed in liver /gb=AK346232 /gi=288785225 /ug=Ssc.32236 /len=1738"	GO:0000267//cell fraction;GO:0043231//intracellular membrane-bounded organelle	GO:0043169//cation binding;GO:0004722//protein serine/threonine phosphatase activity	GO:0006464//protein modification process;GO:0006796//phosphate metabolic process	gi|291409394|ref|XP_002720975.1|/1.23287e-23/PREDICTED: nuclear LIM interactor-interacting factor 2 [Oryctolagus cuniculus]
gnl|UG|Ssc#S38480211	2	0.58	0	0	4	1.2	"EST-AO203G03 Porcine Testis from PRRSV-infected pig Sus scrofa cDNA clone AO203G03, mRNA sequence /clone=AO203G03 /gb=ES445363 /gi=146286953 /ug=Ssc.34058 /len=794"	GO:0030286//dynein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0003774//motor activity	GO:0009566//fertilization;GO:0009987//cellular process	gi|37595560|ref|NP_003453.2|/1.90104e-111/axonemal dynein light intermediate polypeptide 1 [Homo sapiens]
gnl|UG|Ssc#S58304080	7	2.02	7	2	11	3.31	"PREDICTED: Sus scrofa FERM domain containing 4B (FRMD4B), mRNA /cds=p(1,3108) /gb=XM_003132316 /gi=311269151 /ug=Ssc.20113 /len=4714"	GO:0031252//cell leading edge;GO:0043232	GO:0005488//binding	-	gi|311269152|ref|XP_003132364.1|/0/PREDICTED: FERM domain-containing protein 4B-like [Sus scrofa]
gnl|UG|Ssc#S58304199	27	7.77	50	14.29	16	4.81	"PREDICTED: Sus scrofa DALR anticodon binding domain containing 3 (DALRD3), mRNA /cds=p(207,1985) /gb=XM_003132199 /gi=311268880 /ug=Ssc.12434 /len=2136"	GO:0044424//intracellular part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	gi|311268881|ref|XP_003132247.1|/0/PREDICTED: DALR anticodon-binding domain-containing protein 3-like [Sus scrofa]
gnl|UG|Ssc#S58307643	6	1.73	4	1.14	9	2.7	"PREDICTED: Sus scrofa jagged 2 (JAG2), mRNA /cds=p(1,3132) /gb=XM_003128751 /gi=311261648 /ug=Ssc.79498 /len=3132"	-	-	-	-
gnl|UG|Ssc#S58303520	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa histone-lysine N-methyltransferase SETD1B-like (LOC100156137), mRNA /cds=p(1,5802) /gb=XM_003132875 /gi=311270598 /ug=Ssc.33112 /len=6045"	GO:0034708;GO:0016585//chromatin remodeling complex;GO:0044451//nucleoplasm part	GO:0005488//binding;GO:0018024//histone-lysine N-methyltransferase activity	GO:0034968//histone lysine methylation	gi|311270599|ref|XP_003132923.1|/0/PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SETD1B-like [Sus scrofa]
gnl|UG|Ssc#S58311112	14	4.03	29	8.29	8	2.4	"PREDICTED: Sus scrofa suppressor of Ty 7 (S. cerevisiae)-like (SUPT7L), mRNA /cds=p(1,1263) /gb=XM_003125291 /gi=311252927 /ug=Ssc.57418 /len=1333"	GO:0070461//SAGA-type complex	GO:0003712//transcription cofactor activity;GO:0004468//lysine N-acetyltransferase activity	GO:0016573//histone acetylation;GO:0010467//gene expression	gi|311252928|ref|XP_003125339.1|/0/PREDICTED: STAGA complex 65 subunit gamma-like [Sus scrofa]
gnl|UG|Ssc#S55322000	9	2.59	14	4	15	4.51	"Sus scrofa mRNA, clone:TES010004H06, expressed in testis /gb=AK351144 /gi=288782872 /ug=Ssc.48131 /len=2356"	GO:0016323//basolateral plasma membrane;GO:0016021//integral to membrane	GO:0015197//peptide transporter activity;GO:0015291//secondary active transmembrane transporter activity;GO:0008509//anion transmembrane transporter activity	GO:0015833//peptide transport;GO:0015711//organic anion transport;GO:0071715	gi|194206323|ref|XP_001916755.1|/0/PREDICTED: similar to Solute carrier organic anion transporter family member 3A1 (Solute carrier family 21 member 11) (Sodium-independent organic anion transporter D) (Organic anion-transporting polypeptide D) (OATP-D) (Organic anion transporter polypeptide-r [Equus caballus]
gnl|UG|Ssc#S29977755	0	0	0	0	2	0.6	"PDUts1126F07 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1126F07 5' similar to homologue to ref|NM_178516.2| Homo sapiens hypothetical protein LOC283849 (LOC283849), mRNA, mRNA sequence /clone=PDUts1126F07 /clone_end=5' /gb=CV874413 /gi=84128373 /ug=Ssc.80369 /len=687"	-	-	-	gi|301766092|ref|XP_002918456.1|/1.09736e-127/PREDICTED: uncharacterized protein KIAA0895-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58313027	7	2.02	6	1.72	14	4.21	"PREDICTED: Sus scrofa DnaJ (Hsp40) homolog, subfamily B, member 1, transcript variant 2 (DNAJB1), mRNA /cds=p(125,1165) /gb=XM_003123369 /gi=311249006 /ug=Ssc.3502 /len=2331"	GO:0000267//cell fraction;GO:0031981//nuclear lumen	GO:0005515//protein binding	GO:0051084//'de novo' posttranslational protein folding;GO:0006950//response to stress;GO:0042026//protein refolding	gi|311249007|ref|XP_003123417.1|/3.07745e-177/PREDICTED: dnaJ homolog subfamily B member 1 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58314675	3	0.86	3	0.86	4	1.2	"PREDICTED: Sus scrofa poly [ADP-ribose] polymerase 16-like (LOC100512642), partial mRNA /cds=p(1,798) /gb=XM_003121728 /gi=311245300 /ug=Ssc.11420 /len=798"	GO:0031224//intrinsic to membrane	"GO:0016763//transferase activity, transferring pentosyl groups"	-	gi|311245303|ref|XP_003121778.1|/8.02876e-142/PREDICTED: poly [ADP-ribose] polymerase 16-like [Sus scrofa]
gnl|UG|Ssc#S46876366	6	1.73	0	0	0	0	"PREDICTED: Sus scrofa solute carrier family 35 member F5-like (LOC100155601), mRNA /cds=p(302,1432) /gb=XM_001925542 /gi=311272166 /ug=Ssc.57835 /len=1432"	GO:0031224//intrinsic to membrane	-	GO:0051234//establishment of localization	gi|311272167|ref|XP_001925577.2|/1.52155e-178/PREDICTED: solute carrier family 35 member F5-like [Sus scrofa]
gnl|UG|Ssc#S18359974	3	0.86	4	1.14	0	0	"915998 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK455415 /gi=40802629 /ug=Ssc.24062 /len=670"	-	-	-	-
gnl|UG|Ssc#S58307200	0	0	3	0.86	5	1.5	"PREDICTED: Sus scrofa PHD finger protein 17 (PHF17), mRNA /cds=p(130,2658) /gb=XM_003129196 /gi=311262565 /ug=Ssc.13322 /len=4840"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0046914//transition metal ion binding	"GO:0043967//histone H4 acetylation;GO:0050896//response to stimulus;GO:0012501//programmed cell death;GO:0016049//cell growth;GO:0006351//transcription, DNA-dependent"	gi|311262566|ref|XP_003129244.1|/0/PREDICTED: protein Jade-1-like [Sus scrofa]
gnl|UG|Ssc#S55319372	11	3.17	20	5.72	11	3.31	"Sus scrofa mRNA, clone:LVRM10140E02, expressed in liver /gb=AK346320 /gi=288785512 /ug=Ssc.76206 /len=2692"	GO:0042995//cell projection	GO:0032559	GO:0019538//protein metabolic process	gi|149698418|ref|XP_001503041.1|/0/PREDICTED: Bardet-Biedl syndrome 12 [Equus caballus]
gnl|UG|Ssc#S58309774	0	0	0	0	0	0	"PREDICTED: Sus scrofa anoctamin-6-like (LOC100525992), mRNA /cds=p(1,1743) /gb=XM_003126628 /gi=311256481 /ug=Ssc.11028 /len=4792"	GO:0034702	GO:0005253//anion channel activity	GO:0015698//inorganic anion transport	gi|311256482|ref|XP_003126676.1|/0/PREDICTED: anoctamin-6-like [Sus scrofa]
gnl|UG|Ssc#S35169008	83	23.9	22	6.29	74	22.24	"Sus scrofa mRNA, clone:OVRM10123D02, expressed in ovary /gb=AK235892 /gi=115550817 /ug=Ssc.11141 /len=1356"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	GO:0070011;GO:0005488//binding	GO:0051605//protein maturation by peptide bond cleavage;GO:0030073//insulin secretion;GO:0015980//energy derivation by oxidation of organic compounds	gi|114658678|ref|XP_510560.2|/1.06512e-101/PREDICTED: similar to SPC18 protein [Pan troglodytes]
gnl|UG|Ssc#S55323962	298	85.8	231	66.03	255	76.63	"Sus scrofa mRNA, clone:AMP010019H02, expressed in alveolar macrophages /gb=AK343699 /gi=288780910 /ug=Ssc.26948 /len=2086"	GO:0070161;GO:0012505//endomembrane system;GO:0042995//cell projection;GO:0016023//cytoplasmic membrane-bounded vesicle	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0019901//protein kinase binding	GO:0006461//protein complex assembly;GO:0007015//actin filament organization;GO:0010608//posttranscriptional regulation of gene expression;GO:0002064//epithelial cell development;GO:0009894;GO:0016055//Wnt receptor signaling pathway;GO:0008284//positive regulation of cell proliferation;GO:0001709//cell fate determination;GO:0006887//exocytosis;GO:0016337//cell-cell adhesion;GO:0008104//protein localization;GO:0051235;GO:0009207;GO:0001942//hair follicle development;GO:0030035//microspike assembly;GO:0033674//positive regulation of kinase activity;GO:0001934//positive regulation of protein phosphorylation;GO:0045597//positive regulation of cell differentiation;GO:0045216//cell-cell junction organization;GO:0031269//pseudopodium assembly;GO:0040007//growth;GO:0006935//chemotaxis;GO:0007265//Ras protein signal transduction;GO:0061245;GO:0040023//establishment of nucleus localization;GO:0007599//hemostasis;GO:0030216//keratinocyte differentiation;GO:0048729//tissue morphogenesis;GO:0043393//regulation of protein binding;GO:0007173//epidermal growth factor receptor signaling pathway;GO:0006275//regulation of DNA replication;GO:0007267//cell-cell signaling;GO:0043551//regulation of phosphatidylinositol 3-kinase activity;GO:0002573//myeloid leukocyte differentiation;GO:0043410//positive regulation of MAPKKK cascade;GO:0009746;GO:0060788;GO:0007067//mitosis;GO:0031294	"gi|99032068|pdb|2DFK|B/8.57833e-107/Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex"
gnl|UG|Ssc#S35170690	0	0	0	0	6	1.8	"Sus scrofa mRNA, clone:TCH010086C06, expressed in trachea /gb=AK238338 /gi=115549149 /ug=Ssc.2895 /len=1338"	-	-	-	gi|117949325|sp|Q9N0X0.2|AURKB_PIG/0/RecName: Full=Serine/threonine-protein kinase 12; AltName: Full=Aurora kinase B; AltName: Full=Serine/threonine-protein kinase aurora-B
gnl|UG|Ssc#S40477884	79	22.74	263	75.18	141	42.37	"rspc032_f2.y1 spc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW572490 /gi=183082946 /ug=Ssc.39789 /len=597"	-	-	-	-
gnl|UG|Ssc#S58301738	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa UDP-xylose and UDP-N-acetylglucosamine transporter-like (LOC100525844), mRNA /cds=p(1,1080) /gb=XM_003134659 /gi=311275368 /ug=Ssc.84461 /len=1112"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0015165//pyrimidine nucleotide sugar transmembrane transporter activity	GO:0015781//pyrimidine nucleotide-sugar transport	gi|311275369|ref|XP_003134707.1|/0/PREDICTED: UDP-xylose and UDP-N-acetylglucosamine transporter-like [Sus scrofa]
gnl|UG|Ssc#S58308993	12	3.45	13	3.72	11	3.31	"PREDICTED: Sus scrofa myeloid-associated differentiation marker-like, transcript variant 1 (LOC100519316), mRNA /cds=p(141,1109) /gb=XM_003127404 /gi=311258113 /ug=Ssc.27242 /len=2421"	GO:0031224//intrinsic to membrane	-	-	gi|311258112|ref|XP_003127453.1|/3.80321e-162/PREDICTED: myeloid-associated differentiation marker-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58310756	11	3.17	23	6.57	21	6.31	"PREDICTED: Sus scrofa uridine-cytidine kinase 2-like (LOC100512409), mRNA /cds=p(211,996) /gb=XM_003125638 /gi=311253912 /ug=Ssc.24728 /len=1069"	GO:0044444//cytoplasmic part;GO:0042598//vesicular fraction	GO:0019206//nucleoside kinase activity;GO:0032559	GO:0006796//phosphate metabolic process;GO:0009611//response to wounding;GO:0009174;GO:0070482;GO:0009112;GO:0007610//behavior;GO:0070646;GO:0008655//pyrimidine-containing compound salvage	gi|311253913|ref|XP_003125686.1|/1.33583e-138/PREDICTED: uridine-cytidine kinase 2-like [Sus scrofa]
gnl|UG|Ssc#S55327618	5	1.44	0	0	5	1.5	"Sus scrofa F-box and leucine-rich repeat protein 4 (FBXL4), mRNA /cds=p(166,2031) /gb=NM_001171752 /gi=284795273 /ug=Ssc.19070 /len=2384"	GO:0043234//protein complex;GO:0031981//nuclear lumen	-	GO:0019941//modification-dependent protein catabolic process	gi|284795274|ref|NP_001165223.1|/0/F-box/LRR-repeat protein 4 [Sus scrofa]
gnl|UG|Ssc#S58301707	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa adenosylhomocysteinase-like 2 (AHCYL2), mRNA /cds=p(32,1864) /gb=XM_003134679 /gi=311275432 /ug=Ssc.34991 /len=2184"	-	GO:0016802	GO:0044237//cellular metabolic process	gi|311275433|ref|XP_003134727.1|/0/PREDICTED: putative adenosylhomocysteinase 3-like [Sus scrofa]
gnl|UG|Ssc#S58310903	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa hypothetical protein LOC100515542, transcript variant 2 (LOC100515542), mRNA /cds=p(189,437) /gb=XM_003125499 /gi=311253404 /ug=Ssc.49264 /len=843"	-	-	-	gi|311253403|ref|XP_003125546.1|/1.65985e-39/PREDICTED: hypothetical protein LOC100515542 isoform 1 [Sus scrofa]
gnl|UG|Ssc#S34500767	22	6.33	14	4	20	6.01	"DB813266 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10084F03 /clone_end=3' /gb=DB813266 /gi=112774825 /ug=Ssc.93748 /len=829"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen	GO:0043566//structure-specific DNA binding;GO:0090079	GO:0000377	gi|296189557|ref|XP_002742821.1|/3.92646e-86/PREDICTED: poly(rC)-binding protein 1 isoform 1 [Callithrix jacchus]
gnl|UG|Ssc#S58306369	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa neurogranin-like, transcript variant 2 (LOC100522508), mRNA /cds=p(184,420) /gb=XM_003130026 /gi=311264255 /ug=Ssc.18503 /len=1251"	GO:0042995//cell projection	GO:0005515//protein binding	GO:0035556//intracellular signal transduction;GO:0048731	gi|57085897|ref|XP_536537.1|/2.57558e-22/PREDICTED: similar to neurogranin [Canis familiaris]
gnl|UG|Ssc#S55293317	0	0	2	0.57	0	0	"FS665840 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10022E09 5', mRNA sequence /clone=HTMT10022E09 /clone_end=5' /gb=FS665840 /gi=288292091 /ug=Ssc.20 /len=778"	GO:0044421//extracellular region part	GO:0005102//receptor binding	GO:0048646//anatomical structure formation involved in morphogenesis;GO:0001819//positive regulation of cytokine production;GO:0032609//interferon-gamma production;GO:0042102//positive regulation of T cell proliferation;GO:0007155//cell adhesion;GO:0008624//induction of apoptosis by extracellular signals;GO:0002460//adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	gi|47522820|ref|NP_999162.1|/3.26977e-108/interleukin-18 precursor [Sus scrofa]
gnl|UG|Ssc#S46880948	22	6.33	28	8	14	4.21	"PREDICTED: Sus scrofa NF1-B3, transcript variant 1 (LOC100155995), mRNA /cds=p(106,1368) /gb=XM_001928057 /gi=311245768 /ug=Ssc.25271 /len=3368"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043566//structure-specific DNA binding	GO:0007606//sensory perception of chemical stimulus;GO:0030323//respiratory tube development;GO:0006259//DNA metabolic process;GO:0007420//brain development;GO:0008283//cell proliferation;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter	gi|115497972|ref|NP_001069572.1|/0/nuclear factor 1 B-type [Bos taurus]
gnl|UG|Ssc#S40157820	0	0	2	0.57	0	0	"rhyp14c_j5.y1 hyp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW252727 /gi=182581116 /ug=Ssc.68234 /len=496"	-	-	-	gi|300872546|gb|ADK39026.1|/6.40349e-11/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S35166281	25	7.2	4	1.14	24	7.21	"Sus scrofa mRNA, clone:OVRM10213A06, expressed in ovary /gb=AK236660 /gi=115553457 /ug=Ssc.9318 /len=2704"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0032559	GO:0006259//DNA metabolic process;GO:0022402//cell cycle process;GO:0006796//phosphate metabolic process;GO:0030177//positive regulation of Wnt receptor signaling pathway;GO:0007623//circadian rhythm;GO:0031331;GO:0008104//protein localization;GO:0006464//protein modification process	gi|311255082|ref|XP_003126072.1|/0/PREDICTED: casein kinase I isoform epsilon-like [Sus scrofa]
gnl|UG|Ssc#S58310140	0	0	0	0	0	0	"PREDICTED: Sus scrofa matrix metallopeptidase 19 (MMP19), mRNA /cds=p(59,1681) /gb=XM_003126258 /gi=311255636 /ug=Ssc.42838 /len=2194"	GO:0031224//intrinsic to membrane;GO:0031012//extracellular matrix	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding	GO:0048869;GO:0022602//ovulation cycle process;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0009719;GO:0019538//protein metabolic process;GO:0032963//collagen metabolic process;GO:0010033//response to organic substance	gi|311255637|ref|XP_003126306.1|/0/PREDICTED: matrix metalloproteinase-19-like [Sus scrofa]
gnl|UG|Ssc#S35167269	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10196D12, expressed in ovary /gb=AK236475 /gi=115552470 /ug=Ssc.55083 /len=1563"	GO:0044464//cell part	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0043169//cation binding"	GO:0006796//phosphate metabolic process	gi|115311793|sp|Q58D63.2|MOL2A_BOVIN/1.15953e-118/RecName: Full=Mps one binder kinase activator-like 2A; AltName: Full=Mob1 homolog 2A
gnl|UG|Ssc#S58305256	0	0	6	1.72	2	0.6	"PREDICTED: Sus scrofa serine/threonine-protein kinase LMTK1-like (LOC100513039), mRNA /cds=p(1,5211) /gb=XM_003131153 /gi=311266656 /ug=Ssc.80546 /len=5211"	GO:0043231//intracellular membrane-bounded organelle	"GO:0005488//binding;GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0006468//protein phosphorylation	gi|311266657|ref|XP_003131201.1|/0/PREDICTED: serine/threonine-protein kinase LMTK1-like [Sus scrofa]
gnl|UG|Ssc#S19542577	49	14.11	51	14.58	43	12.92	"947483 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN158673 /gi=46173103 /ug=Ssc.22357 /len=882"	-	-	-	-
gnl|UG|Ssc#S55324249	12	3.45	19	5.43	17	5.11	"Sus scrofa mRNA, clone:ADR010102H03, expressed in adrenal gland /gb=AK343609 /gi=288780623 /ug=Ssc.95867 /len=1818"	GO:0015630//microtubule cytoskeleton;GO:0044459//plasma membrane part;GO:0005768//endosome	GO:0005488//binding;GO:0004725//protein tyrosine phosphatase activity	GO:0016477//cell migration;GO:0006470//protein dephosphorylation;GO:0032501//multicellular organismal process	gi|311263657|ref|XP_003129786.1|/2.99456e-44/PREDICTED: protein tyrosine phosphatase type IVA 1-like [Sus scrofa]
gnl|UG|Ssc#S28103973	2	0.58	2	0.57	3	0.9	"Sus scrofa alpha-2,8-polysialyltransferase (St8sia4) mRNA, complete cds /cds=p(290,1369) /gb=DQ133503 /gi=71800664 /ug=Ssc.39780 /len=5287"	GO:0031228//intrinsic to Golgi membrane	GO:0008373//sialyltransferase activity	GO:0048731;GO:0006935//chemotaxis;GO:0006487//protein N-linked glycosylation	"gi|122425617|ref|NP_446366.1|/0/ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 [Rattus norvegicus]"
gnl|UG|Ssc#S58307211	41	11.8	22	6.29	32	9.62	"PREDICTED: Sus scrofa N(alpha)-acetyltransferase 15, NatA auxiliary subunit (NAA15), partial mRNA /cds=p(1,2266) /gb=XM_003129186 /gi=311262542 /ug=Ssc.12421 /len=2266"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0043021//ribonucleoprotein binding;GO:0016407//acetyltransferase activity	"GO:0048869;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0006473//protein acetylation;GO:0006355//regulation of transcription, DNA-dependent;GO:0032501//multicellular organismal process"	"gi|311262543|ref|XP_003129234.1|/0/PREDICTED: n-alpha-acetyltransferase 15, NatA auxiliary subunit-like, partial [Sus scrofa]"
gnl|UG|Ssc#S35172810	120	34.55	226	64.6	109	32.76	"Sus scrofa mRNA, clone:AMP010090H08, expressed in alveolar macrophage /gb=AK231080 /gi=115547025 /ug=Ssc.1250 /len=2151"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	GO:0003723//RNA binding;GO:0004812//aminoacyl-tRNA ligase activity;GO:0016597//amino acid binding;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|311273964|ref|XP_003134121.1|/0/PREDICTED: arginyl-tRNA synthetase, cytoplasmic [Sus scrofa]"
gnl|UG|Ssc#S18551678	2	0.58	0	0	2	0.6	"BX920329 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0005.l.13 5prim, mRNA sequence /clone=scan0005.l.13 /clone_end=5' /gb=BX920329 /gi=90241131 /ug=Ssc.85003 /len=577"	-	-	-	-
gnl|UG|Ssc#S46880795	7	2.02	4	1.14	14	4.21	"PREDICTED: Sus scrofa atlastin GTPase 1 (ATL1), mRNA /cds=p(401,1828) /gb=XM_001925498 /gi=311245479 /ug=Ssc.90973 /len=2549"	GO:0031224//intrinsic to membrane;GO:0043005//neuron projection;GO:0031985//Golgi cisterna;GO:0031090//organelle membrane;GO:0012505//endomembrane system;GO:0042598//vesicular fraction	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0005515//protein binding	GO:0006996//organelle organization;GO:0051259//protein oligomerization;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0009207	"gi|119586113|gb|EAW65709.1|/0/spastic paraplegia 3A (autosomal dominant), isoform CRA_e [Homo sapiens]"
gnl|UG|Ssc#S16517570	0	0	0	0	2	0.6	"816081 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF180914 /gi=33292690 /ug=Ssc.83055 /len=674"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0016211//ammonia ligase activity;GO:0005515//protein binding;GO:0016831//carboxy-lyase activity;GO:0032559	GO:0009746;GO:0006541//glutamine metabolic process;GO:0001505//regulation of neurotransmitter levels	gi|262072802|dbj|BAI47709.1|/1.10915e-116/glutamate-ammonia ligase [Sus scrofa]
gnl|UG|Ssc#S31102453	0	0	0	0	0	0	"1497871 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY406291 /gi=87207594 /ug=Ssc.88998 /len=633"	GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding;GO:0018024//histone-lysine N-methyltransferase activity;GO:0005515//protein binding	GO:0034968//histone lysine methylation;GO:0018022//peptidyl-lysine methylation	gi|296482001|gb|DAA24116.1|/3.66697e-76/euchromatic histone-lysine N-methyltransferase 1 [Bos taurus]
gnl|UG|Ssc#S58308046	7	2.02	0	0	9	2.7	"PREDICTED: Sus scrofa inositol 1,4,5-triphosphate receptor, type 3 (ITPR3), mRNA /cds=p(1,8016) /gb=XM_003128345 /gi=311260253 /ug=Ssc.12677 /len=9041"	GO:0031981//nuclear lumen;GO:0030133//transport vesicle;GO:0031965//nuclear membrane;GO:0044297//cell body;GO:0016021//integral to membrane;GO:0042995//cell projection;GO:0042598//vesicular fraction	GO:0043178//alcohol binding;GO:0005088//Ras guanyl-nucleotide exchange factor activity;GO:0005217//intracellular ligand-gated ion channel activity;GO:0046873//metal ion transmembrane transporter activity;GO:0005543//phospholipid binding;GO:0005261//cation channel activity;GO:0004872//receptor activity	GO:0015980//energy derivation by oxidation of organic compounds;GO:0007599//hemostasis;GO:0007204//elevation of cytosolic calcium ion concentration;GO:0006816//calcium ion transport;GO:0050909//sensory perception of taste;GO:0010863//positive regulation of phospholipase C activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0051259//protein oligomerization;GO:0010038//response to metal ion;GO:0030073//insulin secretion;GO:0001775//cell activation	"gi|311260254|ref|XP_003128393.1|/0/PREDICTED: inositol 1,4,5-trisphosphate receptor type 3-like [Sus scrofa]"
gnl|UG|Ssc#S58309624	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa protein phosphatase 6, regulatory subunit 2 (PPP6R2), mRNA /cds=p(147,2954) /gb=XM_003126768 /gi=311256819 /ug=Ssc.32516 /len=3606"	GO:0043227//membrane-bounded organelle;GO:0044424//intracellular part	GO:0005488//binding	-	gi|311256820|ref|XP_003126816.1|/0/PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2-like [Sus scrofa]
gnl|UG|Ssc#S58303300	220	63.34	534	152.64	265	79.64	"PREDICTED: Sus scrofa wings apart-like homolog (Drosophila) (WAPAL), miscRNA /gb=XR_045335 /gi=311271462 /ug=Ssc.24185 /len=6195"	GO:0044427;GO:0000794//condensed nuclear chromosome	GO:0005488//binding	GO:0051704;GO:0006260//DNA replication;GO:0035561;GO:0000087//M phase of mitotic cell cycle;GO:0007063//regulation of sister chromatid cohesion;GO:0034502//protein localization to chromosome;GO:0042221//response to chemical stimulus	gi|296472069|gb|DAA14184.1|/0/WAPL family member (wapl-1)-like [Bos taurus]
gnl|UG|Ssc#S58311549	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa GRIP and coiled-coil domain containing 2 (GCC2), mRNA /cds=p(1,5193) /gb=XM_003124853 /gi=311252039 /ug=Ssc.21660 /len=6543"	GO:0044431//Golgi apparatus part	GO:0005515//protein binding	"GO:0042147//retrograde transport, endosome to Golgi;GO:0006623//protein targeting to vacuole;GO:0000226//microtubule cytoskeleton organization;GO:0033157//regulation of intracellular protein transport;GO:0007030//Golgi organization"	gi|311252040|ref|XP_003124901.1|/0/PREDICTED: GRIP and coiled-coil domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S55319842	6026	1734.91	6401	1829.72	2839	853.19	"Sus scrofa mRNA, clone:THY010110F11, expressed in thymus /gb=AK351923 /gi=288785042 /ug=Ssc.22696 /len=2361"	GO:0031981//nuclear lumen;GO:0043234//protein complex;GO:0042995//cell projection;GO:0000267//cell fraction;GO:0005694//chromosome;GO:0044421//extracellular region part	GO:0008289//lipid binding;GO:0005102//receptor binding;GO:0008134//transcription factor binding;GO:0019843//rRNA binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0005539//glycosaminoglycan binding;GO:0000400//four-way junction DNA binding;GO:0019887//protein kinase regulator activity	"GO:0006954//inflammatory response;GO:0006284//base-excision repair;GO:0001932//regulation of protein phosphorylation;GO:0070555//response to interleukin-1;GO:0007346//regulation of mitotic cell cycle;GO:0008284//positive regulation of cell proliferation;GO:0043434//response to peptide hormone stimulus;GO:0045661//regulation of myoblast differentiation;GO:0032989;GO:0007423//sensory organ development;GO:0002562;GO:0005981//regulation of glycogen catabolic process;GO:0006266//DNA ligation;GO:0000737//DNA catabolic process, endonucleolytic;GO:0031960//response to corticosteroid stimulus;GO:0042742//defense response to bacterium;GO:0010952//positive regulation of peptidase activity;GO:0030595//leukocyte chemotaxis;GO:0031347//regulation of defense response;GO:0002274;GO:0045597//positive regulation of cell differentiation;GO:0033028//myeloid cell apoptosis;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0010975//regulation of neuron projection development;GO:0071103//DNA conformation change;GO:0002237//response to molecule of bacterial origin;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0006260//DNA replication;GO:0048511//rhythmic process;GO:0051099//positive regulation of binding;GO:0009746;GO:0030036//actin cytoskeleton organization;GO:0030323//respiratory tube development;GO:0014909//smooth muscle cell migration;GO:0016568//chromatin modification;GO:0050927//positive regulation of positive chemotaxis"	gi|148673911|gb|EDL05858.1|/1.29876e-98/mCG144566 [Mus musculus]
gnl|UG|Ssc#S55327199	6	1.73	11	3.14	7	2.1	"Sus scrofa mRNA, clone:OVR010034B01, expressed in ovary /gb=AK347450 /gi=288576857 /ug=Ssc.8998 /len=1772"	-	GO:0005488//binding	-	gi|77735569|ref|NP_001029480.1|/3.4545e-130/proline-rich nuclear receptor coactivator 1 [Bos taurus]
gnl|UG|Ssc#S58314414	362	104.22	211	60.31	355	106.69	"PREDICTED: Sus scrofa talin 1 (TLN1), miscRNA /gb=XR_045662 /gi=311245987 /ug=Ssc.16858 /len=8565"	-	-	-	-
gnl|UG|Ssc#S35169434	18	5.18	0	0	17	5.11	"Sus scrofa mRNA, clone:THY010015F04, expressed in thymus /gb=AK238670 /gi=115550405 /ug=Ssc.21211 /len=1413"	GO:0005681//spliceosomal complex	GO:0016859//cis-trans isomerase activity;GO:0003676//nucleic acid binding;GO:0008144//drug binding	GO:0000377;GO:0044267//cellular protein metabolic process	gi|311258962|ref|XP_003127866.1|/3.92261e-179/PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S6081866	33	9.5	32	9.15	34	10.22	"MI-P-CP1-nzc-d-24-0-UI.s1 MI-P-CP1 Sus scrofa cDNA clone MI-P-CP1-nzc-d-24-0-UI 3', mRNA sequence /clone=MI-P-CP1-nzc-d-24-0-UI /clone_end=3' /gb=BQ604550 /gi=21551276 /ug=Ssc.79329 /len=826"	-	-	-	-
gnl|UG|Ssc#S55285799	10	2.88	4	1.14	6	1.8	"FS678064 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010096B12 5', mRNA sequence /clone=KDN010096B12 /clone_end=5' /gb=FS678064 /gi=288281928 /ug=Ssc.18501 /len=828"	GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding	GO:0006412//translation;GO:0016458//gene silencing	gi|297708946|ref|XP_002831212.1|/6.57587e-126/PREDICTED: trinucleotide repeat-containing gene 6B protein-like [Pongo abelii]
gnl|UG|Ssc#S58303774	21	6.05	31	8.86	7	2.1	"PREDICTED: Sus scrofa integrin, beta 5 (ITGB5), mRNA /cds=p(1,2319) /gb=XM_003132623 /gi=311269876 /ug=Ssc.26290 /len=2798"	GO:0005924//cell-substrate adherens junction;GO:0005887//integral to plasma membrane	GO:0004871//signal transducer activity;GO:0005102//receptor binding	GO:0031589//cell-substrate adhesion;GO:0007166//cell surface receptor linked signaling pathway;GO:0003012//muscle system process	gi|311269877|ref|XP_003132671.1|/0/PREDICTED: LOW QUALITY PROTEIN: integrin beta-5 [Sus scrofa]
gnl|UG|Ssc#S35322968	0	0	0	0	0	0	"SusFleck_BFN_0005_0008_5_pCNS_N19 SusFleck Backfat Normalized Sus scrofa cDNA clone 0005_0008_N19 5', mRNA sequence /clone=0005_0008_N19 /clone_end=5' /gb=DT321360 /gi=116340530 /ug=Ssc.29018 /len=615"	GO:0019866//organelle inner membrane;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0035556//intracellular signal transduction;GO:0006935//chemotaxis;GO:0009966//regulation of signal transduction	gi|74005906|ref|XP_856858.1|/4.60143e-20/PREDICTED: similar to SLIT-ROBO Rho GTPase activating protein 2 (srGAP2) (Formin-binding protein 2) isoform 5 [Canis familiaris]
gnl|UG|Ssc#S46875714	8	2.3	6	1.72	5	1.5	"PREDICTED: Sus scrofa uracil phosphoribosyltransferase homolog (LOC100151798), mRNA /cds=p(140,1054) /gb=XM_001928682 /gi=311276523 /ug=Ssc.10699 /len=2255"	GO:0043231//intracellular membrane-bounded organelle	GO:0016740//transferase activity	"GO:0055086//nucleobase, nucleoside and nucleotide metabolic process"	gi|194045009|ref|XP_001928717.1|/2.5905e-173/PREDICTED: uracil phosphoribosyltransferase homolog [Sus scrofa]
gnl|UG|Ssc#S35170980	70	20.15	60	17.15	52	15.63	"Sus scrofa mRNA, clone:OVRM10063D07, expressed in ovary /gb=AK235262 /gi=115548859 /ug=Ssc.1911 /len=1565"	GO:0031981//nuclear lumen;GO:0043234//protein complex	GO:0017111//nucleoside-triphosphatase activity;GO:0032559	"GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0009207;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|301770835|ref|XP_002920836.1|/0/PREDICTED: 26S protease regulatory subunit 4-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40049562	0	0	2	0.57	0	0	"rese38c_o16.y1 ese Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW144469 /gi=182560207 /ug=Ssc.81098 /len=635"	GO:0031224//intrinsic to membrane	-	-	gi|122937402|ref|NP_001073952.1|/1.40313e-91/transmembrane protein 8C [Homo sapiens]
gnl|UG|Ssc#S46880262	17	4.89	8	2.29	20	6.01	"PREDICTED: Sus scrofa family with sequence similarity 49, member B, transcript variant 1 (FAM49B), mRNA /cds=p(278,1252) /gb=XM_001925085 /gi=311253376 /ug=Ssc.42620 /len=3420"	-	-	-	gi|52782794|sp|Q9NUQ9.1|FA49B_HUMAN/5.81329e-175/RecName: Full=Protein FAM49B; AltName: Full=L1
gnl|UG|Ssc#S55322676	39	11.23	47	13.43	63	18.93	"Sus scrofa mRNA, clone:DCI010038G08, expressed in dendritic cells (immature) /gb=AK344407 /gi=288782196 /ug=Ssc.60435 /len=1555"	GO:0016021//integral to membrane	-	GO:0007154//cell communication;GO:0023052//signaling	gi|311257671|ref|XP_003127251.1|/7.82765e-75/PREDICTED: carcinoembryonic antigen-related cell adhesion molecule 1-like [Sus scrofa]
gnl|UG|Ssc#S46879912	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa OTU domain containing 7B (OTUD7B), mRNA /cds=p(1,3858) /gb=XM_001925669 /gi=311254395 /ug=Ssc.25327 /len=3947"	GO:0043231//intracellular membrane-bounded organelle;GO:0005856//cytoskeleton	GO:0070011;GO:0003676//nucleic acid binding;GO:0016790//thiolester hydrolase activity;GO:0046914//transition metal ion binding	GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0070646	gi|311254396|ref|XP_001925704.2|/0/PREDICTED: OTU domain-containing protein 7B [Sus scrofa]
gnl|UG|Ssc#S17508413	0	0	0	0	2	0.6	"892118 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF795914 /gi=37800487 /ug=Ssc.83628 /len=361"	-	-	-	-
gnl|UG|Ssc#S46880289	0	0	0	0	0	0	"PREDICTED: Sus scrofa cysteine/histidine-rich 1 (CYHR1), mRNA /cds=p(497,1585) /gb=XM_001927620 /gi=311253260 /ug=Ssc.28262 /len=1976"	GO:0012505//endomembrane system;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation	gi|194035510|ref|XP_001927655.1|/0/PREDICTED: cysteine and histidine-rich protein 1 [Sus scrofa]
gnl|UG|Ssc#S46880776	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa WD repeat and HMG-box DNA binding protein 1 (WDHD1), mRNA /cds=p(1,4095) /gb=XM_001924194 /gi=311245545 /ug=Ssc.23999 /len=4701"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding	-	gi|311245546|ref|XP_001924229.2|/0/PREDICTED: WD repeat and HMG-box DNA-binding protein 1 [Sus scrofa]
gnl|UG|Ssc#S58308419	11	3.17	10	2.86	8	2.4	"PREDICTED: Sus scrofa protein mago nashi homolog (LOC100519318), mRNA /cds=p(503,847) /gb=XM_003127999 /gi=311259288 /ug=Ssc.4697 /len=1077"	GO:0043234//protein complex;GO:0005681//spliceosomal complex;GO:0016604//nuclear body;GO:0044444//cytoplasmic part	GO:0003676//nucleic acid binding	"GO:0006412//translation;GO:0007276//gamete generation;GO:0000377;GO:0006405//RNA export from nucleus;GO:0000956//nuclear-transcribed mRNA catabolic process;GO:0006397//mRNA processing;GO:0006353//transcription termination, DNA-dependent"	gi|4505087|ref|NP_002361.1|/9.18746e-79/protein mago nashi homolog [Homo sapiens]
gnl|UG|Ssc#S29976000	3	0.86	2	0.57	3	0.9	"PDUts1105E01 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1105E01 5', mRNA sequence /clone=PDUts1105E01 /clone_end=5' /gb=CV872658 /gi=84126618 /ug=Ssc.22390 /len=657"	-	-	-	-
gnl|UG|Ssc#S58302898	0	0	9	2.57	2	0.6	"PREDICTED: Sus scrofa homeobox protein Hox-D9-like (LOC100517431), mRNA /cds=p(1,1545) /gb=XM_003133504 /gi=311272686 /ug=Ssc.72237 /len=2271"	-	-	GO:0009987//cellular process;GO:0048513//organ development;GO:0035108//limb morphogenesis;GO:0009790//embryo development	gi|311272687|ref|XP_003133552.1|/5.67057e-152/PREDICTED: homeobox protein Hox-D9-like [Sus scrofa]
gnl|UG|Ssc#S18546455	8	2.3	0	0	2	0.6	"BX915106 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0027.p.22 5prim, mRNA sequence /clone=scan0027.p.22 /clone_end=5' /gb=BX915106 /gi=90242316 /ug=Ssc.25324 /len=874"	-	-	-	-
gnl|UG|Ssc#S46877364	3	0.86	0	0	5	1.5	"PREDICTED: Sus scrofa pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 (PLEKHA1), mRNA /cds=p(230,1438) /gb=XM_001927189 /gi=311271943 /ug=Ssc.11133 /len=2044"	GO:0031981//nuclear lumen;GO:0016020//membrane;GO:0001726//ruffle	GO:0035091//phosphatidylinositol binding;GO:0019904//protein domain specific binding	GO:0051234//establishment of localization;GO:0008202//steroid metabolic process;GO:0010741;GO:0040007//growth;GO:0034614//cellular response to reactive oxygen species;GO:0050851//antigen receptor-mediated signaling pathway;GO:0008406//gonad development;GO:0022602//ovulation cycle process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0030030//cell projection organization;GO:0009887//organ morphogenesis;GO:0048232//male gamete generation	gi|194041589|ref|XP_001927224.1|/0/PREDICTED: pleckstrin homology domain-containing family A member 1 [Sus scrofa]
gnl|UG|Ssc#S52535129	13	3.74	6	1.72	9	2.7	"Sus scrofa karyopherin alpha 1 mRNA, complete cds /cds=p(21,1637) /gb=GQ166955 /gi=239923310 /ug=Ssc.57373 /len=1825"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0005635//nuclear envelope	GO:0022892;GO:0005048//signal sequence binding	"GO:0006310//DNA recombination;GO:0006915//apoptosis;GO:0051704;GO:0022415;GO:0006606//protein import into nucleus;GO:0000737//DNA catabolic process, endonucleolytic"	gi|301783727|ref|XP_002927279.1|/0/PREDICTED: importin subunit alpha-1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46876717	28	8.06	10	2.86	22	6.61	"PREDICTED: Sus scrofa anaphase promoting complex subunit 5 (ANAPC5), mRNA /cds=p(104,2371) /gb=XM_001929287 /gi=311270610 /ug=Ssc.21435 /len=2494"	GO:0031981//nuclear lumen;GO:0000152//nuclear ubiquitin ligase complex;GO:0044444//cytoplasmic part	GO:0019787//small conjugating protein ligase activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0007050//cell cycle arrest;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	gi|194042928|ref|XP_001929322.1|/0/PREDICTED: anaphase-promoting complex subunit 5 [Sus scrofa]
gnl|UG|Ssc#S23765150	10	2.88	14	4	10	3.01	"1123019 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN122769 /gi=59817048 /ug=Ssc.42964 /len=800"	-	-	-	-
gnl|UG|Ssc#S55324324	69	19.87	56	16.01	67	20.14	"Sus scrofa mRNA, clone:ADR010086A06, expressed in adrenal gland /gb=AK343534 /gi=288780548 /ug=Ssc.10881 /len=1847"	GO:0031981//nuclear lumen;GO:0044427	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0043566//structure-specific DNA binding	GO:0045897//positive regulation of transcription during mitosis;GO:0009605//response to external stimulus;GO:0048568//embryonic organ development;GO:0003006//developmental process involved in reproduction;GO:0002573//myeloid leukocyte differentiation;GO:0051592//response to calcium ion;GO:0008283//cell proliferation;GO:0001503//ossification;GO:0051384//response to glucocorticoid stimulus;GO:0045595//regulation of cell differentiation;GO:0048609//multicellular organismal reproductive process;GO:0009314//response to radiation;GO:0001825//blastocyst formation;GO:0003015//heart process;GO:0007049//cell cycle	gi|115497082|ref|NP_001069124.1|/9.5903e-131/transcription factor jun-B [Bos taurus]
gnl|UG|Ssc#S46876711	2	0.58	0	0	4	1.2	"PREDICTED: Sus scrofa anaphase promoting complex subunit 7 (ANAPC7), mRNA /cds=p(51,1748) /gb=XM_001929407 /gi=194042939 /ug=Ssc.37758 /len=2418"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part;GO:0000152//nuclear ubiquitin ligase complex	GO:0005488//binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0007050//cell cycle arrest;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	gi|301754557|ref|XP_002913163.1|/0/PREDICTED: anaphase-promoting complex subunit 7-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58310419	82	23.61	44	12.58	58	17.43	"PREDICTED: Sus scrofa protein kinase C and casein kinase substrate in neurons protein 2-like (LOC100523786), mRNA /cds=p(80,1540) /gb=XM_003125979 /gi=311254966 /ug=Ssc.16537 /len=3162"	-	-	-	-
gnl|UG|Ssc#S20938508	13	3.74	3	0.86	11	3.31	"AJ650231 CSEQRAN19 Sus scrofa cDNA clone C0003274_M14, mRNA sequence /clone=C0003274_M14 /gb=AJ650231 /gi=49327076 /ug=Ssc.74161 /len=471"	GO:0000314//organellar small ribosomal subunit;GO:0043231//intracellular membrane-bounded organelle	-	-	"gi|149048476|gb|EDM01017.1|/8.70849e-81/rCG41402, isoform CRA_c [Rattus norvegicus]"
gnl|UG|Ssc#S46880231	18	5.18	46	13.15	12	3.61	"PREDICTED: Sus scrofa Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa (MTBP), mRNA /cds=p(1,2718) /gb=XM_001924836 /gi=194035629 /ug=Ssc.41439 /len=2986"	-	GO:0005488//binding	GO:0000080//G1 phase of mitotic cell cycle;GO:0008283//cell proliferation	gi|194035630|ref|XP_001924871.1|/0/PREDICTED: mdm2-binding protein [Sus scrofa]
gnl|UG|Ssc#S55326340	10	2.88	5	1.43	0	0	"Sus scrofa mRNA, clone:OVRM10123H12, expressed in ovary /gb=AK348311 /gi=288778486 /ug=Ssc.80813 /len=2738"	GO:0016021//integral to membrane;GO:0031228//intrinsic to Golgi membrane	GO:0008373//sialyltransferase activity	GO:0001573//ganglioside metabolic process;GO:0006464//protein modification process	"gi|297667177|ref|XP_002811867.1|/0/PREDICTED: lactosylceramide alpha-2,3-sialyltransferase-like [Pongo abelii]"
gnl|UG|Ssc#S40197676	14	4.03	5	1.43	8	2.4	"rjej09b_n24.y1 jej Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW292583 /gi=182549296 /ug=Ssc.91688 /len=629"	GO:0016020//membrane	GO:0005215//transporter activity	GO:0015833//peptide transport	gi|148717092|dbj|BAF63666.1|/7.51974e-29/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S58306118	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa zinc finger protein 398 (ZNF398), mRNA /cds=p(1,1554) /gb=XM_003130281 /gi=311264770 /ug=Ssc.95508 /len=1554"	GO:0043231//intracellular membrane-bounded organelle	GO:0046872//metal ion binding;GO:0030528//transcription regulator activity	"GO:0006351//transcription, DNA-dependent"	gi|311264771|ref|XP_003130329.1|/0/PREDICTED: zinc finger protein 398-like [Sus scrofa]
gnl|UG|Ssc#S46877102	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa family with sequence similarity 45, member A (FAM45A), mRNA /cds=p(1,1074) /gb=XM_001928421 /gi=311271903 /ug=Ssc.81552 /len=2880"	-	-	-	gi|311271904|ref|XP_001928456.2|/0/PREDICTED: protein FAM45A [Sus scrofa]
gnl|UG|Ssc#S35165125	0	0	4	1.14	4	1.2	"Sus scrofa mRNA, clone:PBL010074B12, expressed in periphral blood mononuclear cell /gb=AK237011 /gi=115554601 /ug=Ssc.54359 /len=2620"	GO:0031981//nuclear lumen;GO:0031461//cullin-RING ubiquitin ligase complex	GO:0005488//binding;GO:0001071//nucleic acid binding transcription factor activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0032446//protein modification by small protein conjugation;GO:0051704;GO:0007059//chromosome segregation;GO:0007166//cell surface receptor linked signaling pathway;GO:0010948	gi|301756082|ref|XP_002913900.1|/0/PREDICTED: f-box/WD repeat-containing protein 7-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58310493	2	0.58	5	1.43	0	0	"PREDICTED: Sus scrofa ecotropic viral integration site 5 (EVI5), mRNA /cds=p(398,2830) /gb=XM_003125910 /gi=311254786 /ug=Ssc.43585 /len=3669"	GO:0015630//microtubule cytoskeleton	GO:0005488//binding	GO:0009987//cellular process;GO:0032501//multicellular organismal process	gi|311254787|ref|XP_003125958.1|/0/PREDICTED: ecotropic viral integration site 5 protein homolog [Sus scrofa]
gnl|UG|Ssc#S55322085	9	2.59	23	6.57	34	10.22	"Sus scrofa mRNA, clone:TCH010086G04, expressed in trachea /gb=AK351059 /gi=288782787 /ug=Ssc.76588 /len=1481"	-	-	-	-
gnl|UG|Ssc#S55285209	0	0	2	0.57	0	0	"FS677794 full-length enriched swine cDNA library, adult kidney Sus scrofa cDNA clone KDN010092H10 5', mRNA sequence /clone=KDN010092H10 /clone_end=5' /gb=FS677794 /gi=288280250 /ug=Ssc.75834 /len=923"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0042393//histone binding	GO:0000070//mitotic sister chromatid segregation	gi|62088668|dbj|BAD92781.1|/9.02341e-106/PHD finger protein 13 variant [Homo sapiens]
gnl|UG|Ssc#S35166925	8	2.3	35	10	12	3.61	"Sus scrofa mRNA, clone:THY010101D07, expressed in thymus /gb=AK239408 /gi=115552814 /ug=Ssc.18652 /len=2430"	GO:0043231//intracellular membrane-bounded organelle;GO:0005576//extracellular region;GO:0016020//membrane	GO:0005102//receptor binding	GO:0050900//leukocyte migration;GO:0050927//positive regulation of positive chemotaxis	gi|45726856|dbj|BAD12838.1|/0/interleukin 16 [Sus scrofa]
gnl|UG|Ssc#S29976900	0	0	6	1.72	0	0	"PDUts1116B05 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1116B05 5' similar to homologue to ref|NM_016447.2| Homo sapiens membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) (MPP6), mRNA, mRNA sequence /clone=PDUts1116B05 /clone_end=5' /gb=CV873558 /gi=84127518 /ug=Ssc.86673 /len=719"	GO:0031224//intrinsic to membrane	"GO:0016776//phosphotransferase activity, phosphate group as acceptor;GO:0019904//protein domain specific binding"	GO:0065003	gi|301754155|ref|XP_002912914.1|/2.00197e-130/PREDICTED: MAGUK p55 subfamily member 6-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55327283	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:OVR010017H07, expressed in ovary /gb=AK347366 /gi=288576773 /ug=Ssc.26591 /len=2786"	GO:0005874//microtubule;GO:0044444//cytoplasmic part;GO:0030529//ribonucleoprotein complex;GO:0009898//internal side of plasma membrane	GO:0046914//transition metal ion binding;GO:0005198//structural molecule activity;GO:0019783//small conjugating protein-specific protease activity;GO:0016790//thiolester hydrolase activity;GO:0019900//kinase binding	GO:0000278//mitotic cell cycle;GO:0016579//protein deubiquitination;GO:0001818//negative regulation of cytokine production;GO:0032886//regulation of microtubule-based process;GO:0043433//negative regulation of transcription factor activity;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0042345//regulation of NF-kappaB import into nucleus;GO:0019941//modification-dependent protein catabolic process	gi|149699064|ref|XP_001489497.1|/0/PREDICTED: cylindromatosis (turban tumor syndrome) [Equus caballus]
gnl|UG|Ssc#S35169846	3	0.86	5	1.43	3	0.9	"Sus scrofa mRNA, clone:LNG010109C11, expressed in lung /gb=AK232228 /gi=115549993 /ug=Ssc.11345 /len=1159"	GO:0044424//intracellular part;GO:0031224//intrinsic to membrane	GO:0000166//nucleotide binding;GO:0008238//exopeptidase activity	-	gi|301779676|ref|XP_002925253.1|/5.77664e-82/PREDICTED: UPF0480 protein C15orf24 homolog [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58310857	247	71.11	453	129.49	295	88.66	"PREDICTED: Sus scrofa zinc finger protein 706-like (LOC100521722), mRNA /cds=p(286,516) /gb=XM_003125545 /gi=311253548 /ug=Ssc.41225 /len=840"	GO:0044464//cell part	GO:0046914//transition metal ion binding	-	gi|297299881|ref|XP_001099076.2|/7.72822e-29/PREDICTED: hypothetical protein LOC710457 [Macaca mulatta]
gnl|UG|Ssc#S38483127	21	6.05	5	1.43	5	1.5	"Sus scrofa LXRA mRNA for liver X receptor alpha, complete cds, tissue_type:thymus and spleen /cds=p(217,1560) /gb=AB254406 /gi=145860189 /ug=Ssc.48215 /len=1698"	GO:0031981//nuclear lumen;GO:0000785//chromatin	GO:0042974//retinoic acid receptor binding;GO:0003712//transcription cofactor activity;GO:0003707//steroid hormone receptor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0032934//sterol binding;GO:0010843//promoter binding;GO:0046914//transition metal ion binding;GO:0046983//protein dimerization activity	GO:0031325//positive regulation of cellular metabolic process;GO:0010557;GO:0032846;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0055092//sterol homeostasis;GO:0030162//regulation of proteolysis;GO:0010742//macrophage derived foam cell differentiation;GO:0045806//negative regulation of endocytosis;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0051004;GO:0010878//cholesterol storage;GO:0048545//response to steroid hormone stimulus;GO:0030157//pancreatic juice secretion;GO:0007623//circadian rhythm;GO:0033299//secretion of lysosomal enzymes;GO:0009755//hormone-mediated signaling pathway;GO:0034123//positive regulation of toll-like receptor signaling pathway;GO:0030518//steroid hormone receptor signaling pathway;GO:0010866//regulation of triglyceride biosynthetic process;GO:0046889//positive regulation of lipid biosynthetic process;GO:0010874//regulation of cholesterol efflux;GO:0032496//response to lipopolysaccharide;GO:0006909//phagocytosis;GO:0006631//fatty acid metabolic process	gi|156120132|ref|NP_001095284.1|/0/oxysterols receptor LXR-alpha [Sus scrofa]
gnl|UG|Ssc#S20116232	137	39.44	32	9.15	169	50.79	"Sus scrofa amyloid beta (A4) precursor protein (APP), mRNA /cds=p(42,2354) /gb=NM_214372 /gi=47523799 /ug=Ssc.14258 /len=3051"	GO:0044430//cytoskeletal part;GO:0012505//endomembrane system;GO:0031091//platelet alpha granule;GO:0016021//integral to membrane;GO:0045202//synapse;GO:0030425//dendrite;GO:0005624//membrane fraction	GO:0005102//receptor binding;GO:0005539//glycosaminoglycan binding;GO:0008047//enzyme activator activity;GO:0019904//protein domain specific binding;GO:0003676//nucleic acid binding;GO:0043169//cation binding;GO:0004866//endopeptidase inhibitor activity	GO:0001775//cell activation;GO:0016198//axon choice point recognition;GO:0006915//apoptosis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007346//regulation of mitotic cell cycle;GO:0007631//feeding behavior;GO:0007416//synapse assembly;GO:0042551//neuron maturation;GO:0007420//brain development;GO:0006887//exocytosis;GO:0006952//defense response;GO:0006464//protein modification process;GO:0035264//multicellular organism growth;GO:0032469//endoplasmic reticulum calcium ion homeostasis;GO:0010469//regulation of receptor activity;GO:0007618//mating;GO:0048668//collateral sprouting;GO:0045596//negative regulation of cell differentiation;GO:0010970//microtubule-based transport;GO:0012502//induction of programmed cell death;GO:0051319;GO:0007626//locomotory behavior;GO:0007599//hemostasis;GO:0051346//negative regulation of hydrolase activity;GO:0007632//visual behavior;GO:0007215//glutamate signaling pathway;GO:0006412//translation;GO:0050905//neuromuscular process;GO:0031124//mRNA 3'-end processing;GO:0051345//positive regulation of hydrolase activity	gi|47523800|ref|NP_999537.1|/0/amyloid beta A4 protein [Sus scrofa]
gnl|UG|Ssc#S20936064	10	2.88	4	1.14	4	1.2	"AJ647787 CSEQRAN19 Sus scrofa cDNA clone C0003260_K23, mRNA sequence /clone=C0003260_K23 /gb=AJ647787 /gi=49324632 /ug=Ssc.85531 /len=462"	GO:0031224//intrinsic to membrane;GO:0005743//mitochondrial inner membrane	GO:0008320//protein transmembrane transporter activity;GO:0005515//protein binding	GO:0006605//protein targeting	gi|25742816|ref|NP_062224.1|/2.21871e-56/mitochondrial import inner membrane translocase subunit Tim17-A [Rattus norvegicus]
gnl|UG|Ssc#S58301370	5	1.44	11	3.14	0	0	"PREDICTED: Sus scrofa mediator complex subunit 14 (MED14), mRNA /cds=p(271,4635) /gb=XM_003135025 /gi=311276159 /ug=Ssc.26550 /len=5188"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0004871//signal transducer activity;GO:0016251//general RNA polymerase II transcription factor activity;GO:0008134//transcription factor binding;GO:0003713//transcription coactivator activity	"GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0030518//steroid hormone receptor signaling pathway;GO:0006352//transcription initiation, DNA-dependent"	gi|311276160|ref|XP_003135073.1|/0/PREDICTED: mediator of RNA polymerase II transcription subunit 14-like [Sus scrofa]
gnl|UG|Ssc#S35724254	0	0	2	0.57	3	0.9	"Sus scrofa mRNA for F-actin capping protein subunit beta 1 (CP beta1 gene) /cds=p(1,834) /gb=AM410996 /gi=118627575 /ug=Ssc.51722 /len=882"	GO:0043234//protein complex;GO:0031252//cell leading edge;GO:0015629//actin cytoskeleton;GO:0044444//cytoplasmic part	GO:0008092//cytoskeletal protein binding	GO:0030835//negative regulation of actin filament depolymerization;GO:0007599//hemostasis;GO:0030031//cell projection assembly	gi|148222609|ref|NP_001090925.1|/1.73286e-159/F-actin-capping protein subunit beta [Sus scrofa]
gnl|UG|Ssc#S35171973	2716	781.95	6882	1967.21	1299	390.38	"Sus scrofa mRNA, clone:OVRM10021E07, expressed in ovary /gb=AK234838 /gi=115547862 /ug=Ssc.79971 /len=1342"	-	-	-	gi|2506441|sp|P00355.4|G3P_PIG/0/RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase; Short=GAPDH; AltName: Full=Peptidyl-cysteine S-nitrosylase GAPDH
gnl|UG|Ssc#S46878410	27	7.77	52	14.86	46	13.82	"PREDICTED: Sus scrofa suppressor of Ty 3 homolog (LOC100154712), mRNA /cds=p(371,1447) /gb=XM_001927614 /gi=311260526 /ug=Ssc.72082 /len=1447"	GO:0070461//SAGA-type complex;GO:0005667//transcription factor complex	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0004468//lysine N-acetyltransferase activity	"GO:0006355//regulation of transcription, DNA-dependent;GO:0016573//histone acetylation"	gi|311260527|ref|XP_001927649.2|/3.11039e-179/PREDICTED: transcription initiation protein SPT3 homolog [Sus scrofa]
gnl|UG|Ssc#S58305122	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa helicase with zinc finger (HELZ), mRNA /cds=p(76,5910) /gb=XM_003131273 /gi=311266933 /ug=Ssc.13421 /len=6959"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding;GO:0003678//DNA helicase activity;GO:0032559	GO:0006259//DNA metabolic process	gi|311266934|ref|XP_003131321.1|/0/PREDICTED: probable helicase with zinc finger domain-like [Sus scrofa]
gnl|UG|Ssc#S46879902	23	6.62	3	0.86	11	3.31	"PREDICTED: Sus scrofa LIX1-like protein-like (LOC100157381), mRNA /cds=p(53,1066) /gb=XM_001927823 /gi=311254421 /ug=Ssc.27444 /len=1186"	-	-	-	gi|73981436|ref|XP_850417.1|/9.0716e-155/PREDICTED: similar to CG13139-PA [Canis familiaris]
gnl|UG|Ssc#S58315025	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa dermatan sulfate epimerase (DSE), mRNA /cds=p(1,2493) /gb=XM_003121381 /gi=311244378 /ug=Ssc.26182 /len=3240"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	"GO:0016857//racemase and epimerase activity, acting on carbohydrates and derivatives"	GO:0030205	gi|311244379|ref|XP_003121429.1|/0/PREDICTED: dermatan-sulfate epimerase-like [Sus scrofa]
gnl|UG|Ssc#S35169098	4	1.15	3	0.86	2	0.6	"Sus scrofa mRNA, clone:OVRM10118A01, expressed in ovary /gb=AK235815 /gi=115550741 /ug=Ssc.51941 /len=1809"	GO:0043232	GO:0008092//cytoskeletal protein binding	GO:0006952//defense response	gi|114051526|ref|NP_001040058.1|/1.6176e-74/coactosin-like protein [Bos taurus]
gnl|UG|Ssc#S43945733	0	0	2	0.57	0	0	"Sus scrofa small calcium-binding mitochondrial carrier 1 (SCAMC-1) mRNA, complete cds; nuclear gene for mitochondrial product /cds=p(1,1434) /gb=EU617320 /gi=186886351 /ug=Ssc.15314 /len=1434"	-	-	-	-
gnl|UG|Ssc#S23768193	0	0	2	0.57	0	0	"1139688 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN125812 /gi=59820091 /ug=Ssc.56007 /len=792"	GO:0044424//intracellular part	GO:0008757//S-adenosylmethionine-dependent methyltransferase activity	GO:0043412;GO:0006730//one-carbon metabolic process	"gi|241593516|ref|XP_002404197.1|/4.03884e-20/protein-L-isoaspartate(D-aspartate) O-methyltransferase, putative [Ixodes scapularis]"
gnl|UG|Ssc#S6008116	5	1.44	0	0	4	1.2	"324597 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BG610112 /gi=13660091 /ti=448054308 /ug=Ssc.75499 /len=464"	-	-	-	gi|301610007|ref|XP_002934552.1|/2.28435e-38/PREDICTED: mitogen-activated protein kinase kinase kinase kinase 4-like [Xenopus (Silurana) tropicalis]
gnl|UG|Ssc#S58313596	5	1.44	0	0	0	0	"PREDICTED: Sus scrofa kelch repeat and BTB domain-containing protein 4-like (LOC100511244), mRNA /cds=p(1,1608) /gb=XM_003122803 /gi=311247856 /ug=Ssc.4712 /len=2339"	-	-	-	gi|311247857|ref|XP_003122851.1|/0/PREDICTED: kelch repeat and BTB domain-containing protein 4-like [Sus scrofa]
gnl|UG|Ssc#S34503516	4	1.15	12	3.43	0	0	"DB818284 full-length enriched swine cDNA library, adult thymus Sus scrofa cDNA 3', mRNA sequence /clone=THY010030F03 /clone_end=3' /gb=DB818284 /gi=112770206 /ug=Ssc.24990 /len=785"	GO:0031224//intrinsic to membrane;GO:0005741//mitochondrial outer membrane	GO:0005488//binding;GO:0008565//protein transporter activity	GO:0006605//protein targeting	gi|301763419|ref|XP_002917136.1|/8.1407e-83/PREDICTED: mitochondrial import receptor subunit TOM70-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35169228	6	1.73	11	3.14	10	3.01	"Sus scrofa mRNA, clone:LVR010047C04, expressed in liver /gb=AK232441 /gi=115550611 /ug=Ssc.89969 /len=1855"	GO:0031981//nuclear lumen	GO:0046872//metal ion binding	-	gi|296477319|gb|DAA19434.1|/2.7536e-177/zinc finger protein 677 [Bos taurus]
gnl|UG|Ssc#S46879754	539	155.18	168	48.02	523	157.18	"PREDICTED: Sus scrofa hypothetical protein LOC100153381 (LOC100153381), mRNA /cds=p(1,735) /gb=XM_001927321 /gi=311253716 /ug=Ssc.3883 /len=2437"	GO:0000153//cytoplasmic ubiquitin ligase complex;GO:0031981//nuclear lumen	"GO:0030528//transcription regulator activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0005515//protein binding;GO:0019787//small conjugating protein ligase activity"	"GO:0006412//translation;GO:0032446//protein modification by small protein conjugation;GO:0051704;GO:0006355//regulation of transcription, DNA-dependent;GO:0019941//modification-dependent protein catabolic process;GO:0045935;GO:0006354//transcription elongation, DNA-dependent"	gi|311253717|ref|XP_001927356.2|/2.96556e-130/PREDICTED: hypothetical protein LOC100153381 [Sus scrofa]
gnl|UG|Ssc#S58307386	0	0	6	1.72	3	0.9	"PREDICTED: Sus scrofa H/ACA ribonucleoprotein complex non-core subunit NAF1-like (LOC100518673), mRNA /cds=p(1,1503) /gb=XM_003129014 /gi=311262188 /ug=Ssc.23975 /len=1958"	GO:0030529//ribonucleoprotein complex;GO:0005634//nucleus	GO:0003723//RNA binding	GO:0042254//ribosome biogenesis;GO:0016070//RNA metabolic process	gi|311262189|ref|XP_003129062.1|/0/PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Sus scrofa]
gnl|UG|Ssc#S40434100	4	1.15	6	1.72	0	0	"rrec07_p14.y1 rec Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW528706 /gi=183110613 /ug=Ssc.92347 /len=483"	-	-	-	-
gnl|UG|Ssc#S58314326	24	6.91	8	2.29	16	4.81	"PREDICTED: Sus scrofa hypothetical protein LOC100515992 (LOC100515992), mRNA /cds=p(1,696) /gb=XM_003122079 /gi=311246213 /ug=Ssc.31694 /len=1599"	GO:0031224//intrinsic to membrane;GO:0031234//extrinsic to internal side of plasma membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0060089;GO:0005515//protein binding	GO:0044267//cellular protein metabolic process;GO:0007267//cell-cell signaling;GO:0033762//response to glucagon stimulus;GO:0009207;GO:0015980//energy derivation by oxidation of organic compounds;GO:0007166//cell surface receptor linked signaling pathway	gi|311246214|ref|XP_003122127.1|/3.29448e-84/PREDICTED: hypothetical protein LOC100515992 [Sus scrofa]
gnl|UG|Ssc#S58312117	0	0	0	0	0	0	"PREDICTED: Sus scrofa UPF0550 protein C7orf28 homolog (LOC100513979), mRNA /cds=p(1,1446) /gb=XM_003124281 /gi=311250868 /ug=Ssc.26368 /len=1737"	GO:0005764//lysosome	-	-	gi|311250869|ref|XP_003124329.1|/0/PREDICTED: LOW QUALITY PROTEIN: UPF0550 protein C7orf28 homolog [Sus scrofa]
gnl|UG|Ssc#S58306060	26	7.49	19	5.43	5	1.5	"PREDICTED: Sus scrofa ras-specific guanine nucleotide-releasing factor RalGPS2-like (LOC100522752), mRNA /cds=p(93,1073) /gb=XM_003130335 /gi=311264889 /ug=Ssc.60378 /len=1225"	GO:0016020//membrane;GO:0044424//intracellular part	GO:0005488//binding;GO:0030695//GTPase regulator activity	GO:0019222//regulation of metabolic process;GO:0035556//intracellular signal transduction	gi|297662638|ref|XP_002809804.1|/0/PREDICTED: ras-specific guanine nucleotide-releasing factor RalGPS2-like isoform 3 [Pongo abelii]
gnl|UG|Ssc#S58306689	13	3.74	3	0.86	11	3.31	"PREDICTED: Sus scrofa nitric oxide-inducible gene protein-like (LOC100517842), mRNA /cds=p(1,2976) /gb=XM_003129716 /gi=311263606 /ug=Ssc.10102 /len=3282"	GO:0044424//intracellular part	-	GO:0007049//cell cycle	gi|311263607|ref|XP_003129764.1|/0/PREDICTED: nitric oxide-inducible gene protein-like [Sus scrofa]
gnl|UG|Ssc#S46877753	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa asteroid homolog 1 (Drosophila) (ASTE1), mRNA /cds=p(128,2167) /gb=XM_001925695 /gi=311268537 /ug=Ssc.47696 /len=2259"	-	"GO:0016788//hydrolase activity, acting on ester bonds"	GO:0006259//DNA metabolic process	gi|194040775|ref|XP_001925730.1|/0/PREDICTED: protein asteroid homolog 1 [Sus scrofa]
gnl|UG|Ssc#S35167458	29	8.35	7	2	33	9.92	"Sus scrofa mRNA, clone:AMP010013D11, expressed in alveolar macrophage /gb=AK230590 /gi=115552281 /ug=Ssc.43442 /len=2515"	GO:0000267//cell fraction;GO:0044444//cytoplasmic part	GO:0008080//N-acetyltransferase activity;GO:0019808//polyamine binding	GO:0008283//cell proliferation;GO:0006598//polyamine catabolic process	"gi|149042390|gb|EDL96097.1|/5.93106e-57/spermidine/spermine N1-acetyl transferase (mapped), isoform CRA_d [Rattus norvegicus]"
gnl|UG|Ssc#S35172857	7	2.02	9	2.57	2	0.6	"Sus scrofa mRNA, clone:AMP010084E02, expressed in alveolar macrophage /gb=AK231033 /gi=115546978 /ug=Ssc.13418 /len=1034"	GO:0031902//late endosome membrane	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0008047//enzyme activator activity;GO:0005488//binding"	GO:0009967//positive regulation of signal transduction;GO:0000165//MAPKKK cascade;GO:0006796//phosphate metabolic process;GO:0043200//response to amino acid stimulus;GO:0008104//protein localization	"gi|119626518|gb|EAX06113.1|/8.66341e-63/mitogen-activated protein kinase kinase 1 interacting protein 1, isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S58303911	349	100.48	112	32.02	753	226.3	"PREDICTED: Sus scrofa stress-associated endoplasmic reticulum protein 1-like (LOC100156392), mRNA /cds=p(382,582) /gb=XM_003132487 /gi=311269542 /ug=Ssc.12899 /len=3088"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0031090//organelle membrane;GO:0030529//ribonucleoprotein complex	-	GO:0060123//regulation of growth hormone secretion;GO:0006984//ER-nucleus signaling pathway;GO:0016044//cellular membrane organization;GO:0006412//translation;GO:0050796//regulation of insulin secretion;GO:0045927//positive regulation of growth;GO:0019318//hexose metabolic process;GO:0009887//organ morphogenesis;GO:0006464//protein modification process	gi|296227833|ref|XP_002759609.1|/3.49611e-30/PREDICTED: hypothetical protein LOC100403508 [Callithrix jacchus]
gnl|UG|Ssc#S35168166	21	6.05	24	6.86	21	6.31	"Sus scrofa mRNA, clone:THY010053F07, expressed in thymus /gb=AK238988 /gi=115551524 /ug=Ssc.56491 /len=1539"	GO:0000267//cell fraction;GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0045202//synapse	"GO:0016772//transferase activity, transferring phosphorus-containing groups;GO:0016208//AMP binding;GO:0051018//protein kinase A binding;GO:0019887//protein kinase regulator activity"	"GO:0015980//energy derivation by oxidation of organic compounds;GO:0007599//hemostasis;GO:0033762//response to glucagon stimulus;GO:0006355//regulation of transcription, DNA-dependent;GO:0032147//activation of protein kinase activity;GO:0010863//positive regulation of phospholipase C activity;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0007126//meiosis;GO:0030073//insulin secretion;GO:0010948;GO:0001704//formation of primary germ layer;GO:0042044//fluid transport"	gi|47522874|ref|NP_999191.1|/0/cAMP-dependent protein kinase type I-alpha regulatory subunit [Sus scrofa]
gnl|UG|Ssc#S55326552	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:OVRM10064A04, expressed in ovary /gb=AK348099 /gi=288778274 /ug=Ssc.12924 /len=3873"	-	-	-	gi|114682415|ref|XP_514691.2|/3.58602e-11/PREDICTED: nuclear receptor coactivator 5 [Pan troglodytes]
gnl|UG|Ssc#S35173907	9	2.59	3	0.86	4	1.2	"Sus scrofa mRNA, clone:SPL010029G12, expressed in spleen /gb=AK237369 /gi=115545928 /ug=Ssc.11477 /len=1549"	GO:0031224//intrinsic to membrane;GO:0005743//mitochondrial inner membrane;GO:0031981//nuclear lumen	GO:0070011	GO:0022602//ovulation cycle process;GO:0006626//protein targeting to mitochondrion;GO:0007292//female gamete generation;GO:0019538//protein metabolic process;GO:0048232//male gamete generation	gi|194209810|ref|XP_001916807.1|/6.41455e-53/PREDICTED: similar to IMP2 inner mitochondrial membrane protease-like [Equus caballus]
gnl|UG|Ssc#S55324441	4	1.15	0	0	9	2.7	"Sus scrofa mRNA, clone:SMG010006A07, expressed in submaxillary gland /gb=AK349965 /gi=288780431 /ug=Ssc.14563 /len=2173"	-	-	-	gi|113205762|ref|NP_001038043.1|/0/granulins [Sus scrofa]
gnl|UG|Ssc#S35324245	2	0.58	0	0	0	0	"SusFleck_BFN_0013_0016_5_pCNS_M15 SusFleck Backfat Normalized Sus scrofa cDNA clone 0013_0016_M15 5', mRNA sequence /clone=0013_0016_M15 /clone_end=5' /gb=DT322637 /gi=116336830 /ug=Ssc.74891 /len=827"	GO:0044444//cytoplasmic part	GO:0016740//transferase activity	GO:0044237//cellular metabolic process	gi|116047849|gb|ABJ53147.1|/6.32853e-28/glutathione S-transferase mu 2 [Sus scrofa]
gnl|UG|Ssc#S40325633	14	4.03	22	6.29	15	4.51	"rnbm15b_i4.y1 nbm Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW420240 /gi=182754712 /ug=Ssc.91963 /len=192"	-	-	-	-
gnl|UG|Ssc#S58306082	5	1.44	0	0	2	0.6	"PREDICTED: Sus scrofa aspartyl-tRNA synthetase, mitochondrial-like (LOC100518569), mRNA /cds=p(1,1227) /gb=XM_003130317 /gi=311264844 /ug=Ssc.6037 /len=2409"	GO:0044429//mitochondrial part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|311264845|ref|XP_003130365.1|/0/PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S46876280	13	3.74	8	2.29	16	4.81	"PREDICTED: Sus scrofa cell differentiation protein RCD1 homolog (LOC100153939), mRNA /cds=p(360,1259) /gb=XM_001925220 /gi=311273055 /ug=Ssc.2149 /len=2099"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0005488//binding	"GO:0006351//transcription, DNA-dependent;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;GO:0003006//developmental process involved in reproduction;GO:0007166//cell surface receptor linked signaling pathway"	gi|74005731|ref|XP_853052.1|/6.9149e-165/PREDICTED: similar to rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) [Canis familiaris]
gnl|UG|Ssc#S40089891	12	3.45	12	3.43	5	1.5	"rfce01c_b14.y1 fce Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW184798 /gi=182524845 /ug=Ssc.67772 /len=409"	-	-	-	gi|300872546|gb|ADK39026.1|/3.31614e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S14889989	3	0.86	0	0	0	0	"sn57_E03.f sn Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CB472604 /gi=29278990 /ug=Ssc.34363 /len=604"	-	-	-	-
gnl|UG|Ssc#S46877467	0	0	0	0	0	0	"PREDICTED: Sus scrofa acyl-Coenzyme A dehydrogenase family, member 11 (LOC100153698), mRNA /cds=p(340,2685) /gb=XM_001924765 /gi=311269388 /ug=Ssc.20570 /len=3037"	GO:0042579//microbody;GO:0042995//cell projection	"GO:0016627//oxidoreductase activity, acting on the CH-CH group of donors;GO:0016740//transferase activity;GO:0050662//coenzyme binding"	GO:0045596//negative regulation of cell differentiation;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0043954//cellular component maintenance;GO:0008152//metabolic process	gi|311269389|ref|XP_001924800.2|/0/PREDICTED: acyl-CoA dehydrogenase family member 11 [Sus scrofa]
gnl|UG|Ssc#S46876579	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa opposite strand transcription unit to Stag3 (LOC100157272), mRNA /cds=p(172,1161) /gb=XM_001929170 /gi=194043211 /ug=Ssc.4943 /len=1632"	-	-	-	gi|194043212|ref|XP_001929205.1|/0/PREDICTED: opposite strand transcription unit to Stag3 [Sus scrofa]
gnl|UG|Ssc#S46876383	9	2.59	0	0	2	0.6	"PREDICTED: Sus scrofa BRI3-binding protein-like (LOC100155348), mRNA /cds=p(25,573) /gb=XM_001924273 /gi=311270546 /ug=Ssc.27497 /len=978"	GO:0016020//membrane;GO:0005739//mitochondrion	-	-	gi|311270547|ref|XP_001924308.2|/6.10096e-79/PREDICTED: BRI3-binding protein-like [Sus scrofa]
gnl|UG|Ssc#S58313863	13	3.74	2	0.57	10	3.01	"PREDICTED: Sus scrofa n-terminal kinase-like protein-like (LOC100517698), mRNA /cds=p(1,2670) /gb=XM_003122558 /gi=311247303 /ug=Ssc.9051 /len=2883"	GO:0015630//microtubule cytoskeleton;GO:0030120//vesicle coat;GO:0044431//Golgi apparatus part	GO:0003676//nucleic acid binding;GO:0004672//protein kinase activity;GO:0032559	GO:0048193//Golgi vesicle transport;GO:0006464//protein modification process	gi|311247304|ref|XP_003122606.1|/0/PREDICTED: n-terminal kinase-like protein-like [Sus scrofa]
gnl|UG|Ssc#S21547393	54	15.55	61	17.44	24	7.21	"UMC-pputal6-001-b03 Peripubertal ovary pputal Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO956285 /gi=51333348 /ug=Ssc.86280 /len=188"	-	-	-	-
gnl|UG|Ssc#S35170388	15	4.32	0	0	10	3.01	"Sus scrofa mRNA, clone:OVRM10085E04, expressed in ovary /gb=AK235473 /gi=115549451 /ug=Ssc.2881 /len=2185"	-	-	-	gi|311258301|ref|XP_003127541.1|/0/PREDICTED: integrator complex subunit 11-like [Sus scrofa]
gnl|UG|Ssc#S26734701	6	1.73	13	3.72	6	1.8	"AJ945683 CSEQRAN17 Sus scrofa cDNA clone C0007307n13 5', mRNA sequence /clone=C0007307n13 /clone_end=5' /gb=AJ945683 /gi=74362425 /ug=Ssc.75225 /len=796"	-	GO:0005488//binding	-	gi|109082370|ref|XP_001097129.1|/1.8243e-138/PREDICTED: zinc finger protein 774 [Macaca mulatta]
gnl|UG|Ssc#S46877495	7	2.02	6	1.72	0	0	"PREDICTED: Sus scrofa bromodomain and PHD finger containing, 1, transcript variant 1 (BRPF1), mRNA /cds=p(1,3663) /gb=XM_001928379 /gi=194041314 /ug=Ssc.13246 /len=4334"	GO:0070775;GO:0016020//membrane	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0016573//histone acetylation	gi|194041315|ref|XP_001928414.1|/0/PREDICTED: peregrin isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46877520	5	1.44	6	1.72	2	0.6	"PREDICTED: Sus scrofa 2',5'-phosphodiesterase 12-like (LOC100157651), mRNA /cds=p(1,1830) /gb=XM_001926462 /gi=311269039 /ug=Ssc.33948 /len=2147"	GO:0043231//intracellular membrane-bounded organelle	GO:0003824//catalytic activity	-	"gi|311269040|ref|XP_001926497.2|/0/PREDICTED: 2',5'-phosphodiesterase 12-like [Sus scrofa]"
gnl|UG|Ssc#S58301619	28	8.06	9	2.57	14	4.21	"PREDICTED: Sus scrofa dnaJ homolog subfamily B member 9-like (LOC100521593), mRNA /cds=p(265,936) /gb=XM_003134777 /gi=311275609 /ug=Ssc.34061 /len=2665"	GO:0031981//nuclear lumen	GO:0005515//protein binding	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0050896//response to stimulus;GO:0043066//negative regulation of apoptosis	gi|311275610|ref|XP_003134825.1|/2.28398e-115/PREDICTED: dnaJ homolog subfamily B member 9-like [Sus scrofa]
gnl|UG|Ssc#S58308762	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa miro domain-containing protein C1orf89 homolog (LOC100521799), mRNA /cds=p(58,876) /gb=XM_003127634 /gi=311258580 /ug=Ssc.29906 /len=1295"	GO:0044464//cell part	GO:0032561	GO:0035556//intracellular signal transduction;GO:0010927;GO:0014020	gi|311258581|ref|XP_003127682.1|/7.57325e-158/PREDICTED: miro domain-containing protein C1orf89 homolog [Sus scrofa]
gnl|UG|Ssc#S58306467	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa histone H4 transcription factor-like (LOC100518324), mRNA /cds=p(66,1622) /gb=XM_003129929 /gi=311264057 /ug=Ssc.44448 /len=2193"	GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0043565//sequence-specific DNA binding;GO:0016564//transcription repressor activity	GO:0051234//establishment of localization;GO:0032583//regulation of gene-specific transcription;GO:0006974//response to DNA damage stimulus;GO:0006259//DNA metabolic process;GO:0043009//chordate embryonic development;GO:0000082//G1/S transition of mitotic cell cycle;GO:0042692//muscle cell differentiation	gi|311264058|ref|XP_003129977.1|/0/PREDICTED: histone H4 transcription factor-like [Sus scrofa]
gnl|UG|Ssc#S35166757	48	13.82	4	1.14	37	11.12	"Sus scrofa mRNA, clone:THY010113C12, expressed in thymus /gb=AK239568 /gi=115552982 /ug=Ssc.40266 /len=1617"	GO:0022624	GO:0005488//binding	"GO:0009653//anatomical structure morphogenesis;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0051320;GO:0007050//cell cycle arrest;GO:0016070//RNA metabolic process;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0006520//cellular amino acid metabolic process;GO:0006915//apoptosis;GO:0030330//DNA damage response, signal transduction by p53 class mediator"	gi|33875323|gb|AAH00338.1|/6.88676e-143/PSMD7 protein [Homo sapiens]
gnl|UG|Ssc#S34507684	80	23.03	48	13.72	57	17.13	"DB815881 full-length enriched swine cDNA library, adult periphral blood mononuclear cell Sus scrofa cDNA 3', mRNA sequence /clone=PBL010029H03 /clone_end=3' /gb=DB815881 /gi=112754041 /ug=Ssc.8936 /len=826"	-	-	-	-
gnl|UG|Ssc#S18354218	0	0	6	1.72	0	0	"893247 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK449659 /gi=40796873 /ug=Ssc.70234 /len=790"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0004702//receptor signaling protein serine/threonine kinase activity;GO:0032559	GO:0042992//negative regulation of transcription factor import into nucleus;GO:0012501//programmed cell death;GO:0022603//regulation of anatomical structure morphogenesis;GO:0002224//toll-like receptor signaling pathway;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006468//protein phosphorylation;GO:0048869;GO:0000165//MAPKKK cascade	gi|149944747|ref|NP_001092550.1|/4.57587e-49/mitogen-activated protein kinase 7 [Bos taurus]
gnl|UG|Ssc#S16516854	0	0	0	0	0	0	"815431 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CF180338 /gi=33292114 /ug=Ssc.18142 /len=642"	GO:0034704//calcium channel complex	GO:0005262//calcium channel activity;GO:0043169//cation binding;GO:0016247//channel regulator activity	GO:0006816//calcium ion transport;GO:0032412	"gi|296474881|gb|DAA16996.1|/5.77446e-48/calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Bos taurus]"
gnl|UG|Ssc#S35171491	973	280.13	401	114.63	2490	748.31	"Sus scrofa mRNA, clone:LNG010015E04, expressed in lung /gb=AK231721 /gi=115548348 /ug=Ssc.10843 /len=1939"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0042623//ATPase activity, coupled;GO:0008135//translation factor activity, nucleic acid binding;GO:0032559"	"GO:0006413//translational initiation;GO:0051704;GO:0009887//organ morphogenesis;GO:0009207;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;GO:0010033//response to organic substance"	gi|56605748|ref|NP_001008336.1|/0/eukaryotic initiation factor 4A-II [Rattus norvegicus]
gnl|UG|Ssc#S46878742	11	3.17	35	10	6	1.8	"PREDICTED: Sus scrofa poly (ADP-ribose) polymerase family, member 6 (PARP6), mRNA /cds=p(450,2342) /gb=XM_001929103 /gi=311260848 /ug=Ssc.93839 /len=2615"	-	"GO:0016763//transferase activity, transferring pentosyl groups"	-	gi|194038724|ref|XP_001929138.1|/0/PREDICTED: poly [ADP-ribose] polymerase 6 [Sus scrofa]
gnl|UG|Ssc#S55322464	83	23.9	15	4.29	42	12.62	"Sus scrofa mRNA, clone:TCH010050D06, expressed in trachea /gb=AK350880 /gi=288782408 /ug=Ssc.43462 /len=2427"	GO:0031981//nuclear lumen;GO:0000267//cell fraction;GO:0005681//spliceosomal complex	"GO:0003724//RNA helicase activity;GO:0005515//protein binding;GO:0000989//transcription factor binding transcription factor activity;GO:0003676//nucleic acid binding;GO:0032559;GO:0042623//ATPase activity, coupled"	"GO:0040007//growth;GO:0006355//regulation of transcription, DNA-dependent;GO:0009207;GO:0000377;GO:0050792//regulation of viral reproduction"	gi|74354729|gb|AAI03319.1|/0/DDX5 protein [Bos taurus]
gnl|UG|Ssc#S26725631	4	1.15	6	1.72	0	0	"AJ961715 KN404_2 Sus scrofa cDNA clone C0007752f09 3', mRNA sequence /clone=C0007752f09 /clone_end=3' /gb=AJ961715 /gi=74378531 /ug=Ssc.44279 /len=879"	-	-	-	-
gnl|UG|Ssc#S26735527	60	17.27	97	27.73	34	10.22	"AJ946071 CSEQRAN17 Sus scrofa cDNA clone C0007306j14 5', mRNA sequence /clone=C0007306j14 /clone_end=5' /gb=AJ946071 /gi=74364109 /ug=Ssc.26219 /len=858"	-	-	-	-
gnl|UG|Ssc#S35171287	20	5.76	6	1.72	12	3.61	"Sus scrofa mRNA, clone:OVRM10055A12, expressed in ovary /gb=AK235169 /gi=115548552 /ug=Ssc.11580 /len=2772"	GO:0031981//nuclear lumen;GO:0019866//organelle inner membrane;GO:0005759//mitochondrial matrix	"GO:0016453;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0000166//nucleotide binding;GO:0005504//fatty acid binding;GO:0048037//cofactor binding;GO:0016836//hydro-lyase activity"	GO:0009062//fatty acid catabolic process;GO:0042221//response to chemical stimulus	"gi|47522754|ref|NP_999127.1|/0/trifunctional enzyme subunit alpha, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S58303871	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa protein kinase C, iota (PRKCI), mRNA /cds=p(2,1684) /gb=XM_003132526 /gi=311269630 /ug=Ssc.41459 /len=1781"	GO:0030427//site of polarized growth;GO:0043231//intracellular membrane-bounded organelle;GO:0043296//apical junction complex;GO:0005626//insoluble fraction;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559;GO:0008289//lipid binding	GO:0032868//response to insulin stimulus;GO:0007043//cell-cell junction assembly;GO:0006900//membrane budding;GO:0006605//protein targeting;GO:0006796//phosphate metabolic process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0030036//actin cytoskeleton organization;GO:0034097//response to cytokine stimulus;GO:0035088//establishment or maintenance of apical/basal cell polarity;GO:0048522;GO:0006464//protein modification process;GO:0010828//positive regulation of glucose transport;GO:0043066//negative regulation of apoptosis;GO:0001754//eye photoreceptor cell differentiation	gi|311269631|ref|XP_003132574.1|/0/PREDICTED: protein kinase C iota type [Sus scrofa]
gnl|UG|Ssc#S18557214	0	0	0	0	2	0.6	"BX925865 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0018.p.03 5prim, mRNA sequence /clone=scan0018.p.03 /clone_end=5' /gb=BX925865 /gi=90243203 /ug=Ssc.42049 /len=875"	GO:0031224//intrinsic to membrane	GO:0008324//cation transmembrane transporter activity	GO:0000041//transition metal ion transport	"gi|296490410|gb|DAA32523.1|/1.52206e-83/solute carrier family 39, member 4-like [Bos taurus]"
gnl|UG|Ssc#S58311412	243	69.96	130	37.16	338	101.58	"PREDICTED: Sus scrofa lysyl oxidase homolog 3-like (LOC100512652), mRNA /cds=p(166,2436) /gb=XM_003124987 /gi=311252315 /ug=Ssc.28652 /len=3531"	GO:0044421//extracellular region part;GO:0044464//cell part	"GO:0046914//transition metal ion binding;GO:0016641//oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor;GO:0004888//transmembrane receptor activity"	GO:0008152//metabolic process;GO:0023052//signaling	gi|311252316|ref|XP_003125035.1|/0/PREDICTED: LOW QUALITY PROTEIN: lysyl oxidase homolog 3-like [Sus scrofa]
gnl|UG|Ssc#S23213575	17	4.89	8	2.29	15	4.51	"Sus scrofa clone Clu_10353.scr.msk.p1.Contig1, mRNA sequence /gb=AY609402 /gi=52350686 /ug=Ssc.26799 /len=1053"	GO:0044444//cytoplasmic part	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation	gi|311276025|ref|XP_003135020.1|/1.212e-51/PREDICTED: hypothetical protein LOC100522912 [Sus scrofa]
gnl|UG|Ssc#S43509691	73	21.02	134	38.3	24	7.21	"Sus scrofa aminopeptidase-like 1 (NPEPL1), mRNA /cds=p(104,1675) /gb=NM_001123148 /gi=178056555 /ug=Ssc.34895 /len=2233"	GO:0044424//intracellular part	GO:0046914//transition metal ion binding;GO:0008237//metallopeptidase activity;GO:0008238//exopeptidase activity	GO:0019538//protein metabolic process	gi|178056556|ref|NP_001116620.1|/0/probable aminopeptidase NPEPL1 [Sus scrofa]
gnl|UG|Ssc#S46880187	0	0	0	0	0	0	"PREDICTED: Sus scrofa ABC transporter (LOC100155583), mRNA /cds=p(1,6966) /gb=XM_001924464 /gi=311254764 /ug=Ssc.10677 /len=6966"	GO:0005626//insoluble fraction;GO:0016021//integral to membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0005548//phospholipid transporter activity;GO:0015405;GO:0032559	GO:0050953//sensory perception of light stimulus;GO:0007602//phototransduction;GO:0009207;GO:0015914//phospholipid transport;GO:0043954//cellular component maintenance	gi|311254765|ref|XP_001924499.2|/0/PREDICTED: retinal-specific ATP-binding cassette transporter [Sus scrofa]
gnl|UG|Ssc#S42501044	0	0	2	0.57	0	0	"Sus scrofa LRRK2 mRNA, complete cds /cds=p(1,7581) /gb=EU019992 /gi=151935436 /ug=Ssc.42667 /len=8049"	GO:0005626//insoluble fraction;GO:0044431//Golgi apparatus part;GO:0044455;GO:0030136//clathrin-coated vesicle	GO:0032561;GO:0004712//protein serine/threonine/tyrosine kinase activity;GO:0008047//enzyme activator activity;GO:0004674//protein serine/threonine kinase activity;GO:0042802//identical protein binding;GO:0032559	GO:0012501//programmed cell death;GO:0010259//multicellular organismal aging;GO:0006468//protein phosphorylation;GO:0016567//protein ubiquitination;GO:0006950//response to stress;GO:0000165//MAPKKK cascade	gi|164664466|ref|NP_001106908.1|/0/leucine-rich repeat serine/threonine-protein kinase 2 [Sus scrofa]
gnl|UG|Ssc#S46878665	258	74.28	208	59.46	227	68.22	"PREDICTED: Sus scrofa polyadenylate-binding protein 2-like (LOC100155260), mRNA /cds=p(187,1107) /gb=XM_001926257 /gi=311260988 /ug=Ssc.16011 /len=2054"	-	-	-	-
gnl|UG|Ssc#S55318640	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:MLN010065E04, expressed in mesenteric lymph nodes /gb=AK346852 /gi=288786244 /ug=Ssc.3924 /len=978"	-	-	-	gi|296473862|gb|DAA15977.1|/1.53289e-106/hypothetical protein LOC512779 [Bos taurus]
gnl|UG|Ssc#S55255276	0	0	0	0	2	0.6	"FS642665 full-length enriched swine cDNA library, adult brain (frontal lobe) Sus scrofa cDNA clone BFLT10033A01 5', mRNA sequence /clone=BFLT10033A01 /clone_end=5' /gb=FS642665 /gi=288251338 /ug=Ssc.77238 /len=806"	-	-	-	gi|297705250|ref|XP_002829493.1|/6.88232e-32/PREDICTED: dapper homolog 3-like [Pongo abelii]
gnl|UG|Ssc#S55321713	122	35.12	133	38.02	130	39.07	"Sus scrofa mRNA, clone:ITT010026B02, expressed in small intestine /gb=AK344972 /gi=288783159 /ug=Ssc.41343 /len=1100"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	GO:0043623//cellular protein complex assembly	gi|74001294|ref|XP_849775.1|/5.4727e-143/PREDICTED: similar to Down syndrome critical region protein 2 isoform a isoform 2 [Canis familiaris]
gnl|UG|Ssc#S35170797	6	1.73	11	3.14	22	6.61	"Sus scrofa mRNA, clone:TCH010065E01, expressed in trachea /gb=AK238231 /gi=115549042 /ug=Ssc.43305 /len=1736"	GO:0044421//extracellular region part	GO:0005488//binding	-	gi|155369768|ref|NP_001094502.1|/0/long palate lung and nasal epithelium protein 1 [Sus scrofa]
gnl|UG|Ssc#S58305109	9	2.59	3	0.86	2	0.6	"PREDICTED: Sus scrofa FtsJ homolog 3 (E. coli) (FTSJ3), mRNA /cds=p(163,2673) /gb=XM_003131287 /gi=311266962 /ug=Ssc.20429 /len=3414"	GO:0005634//nucleus	GO:0008168//methyltransferase activity	GO:0006730//one-carbon metabolic process;GO:0006364//rRNA processing;GO:0009451//RNA modification	gi|311266963|ref|XP_003131335.1|/0/PREDICTED: putative rRNA methyltransferase 3-like [Sus scrofa]
gnl|UG|Ssc#S18554621	4	1.15	7	2	0	0	"BX923272 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0011.i.12 5prim, mRNA sequence /clone=scan0011.i.12 /clone_end=5' /gb=BX923272 /gi=90242519 /ug=Ssc.21997 /len=847"	-	-	-	-
gnl|UG|Ssc#S55260794	0	0	0	0	0	0	"FS668554 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10061D12 5', mRNA sequence /clone=HTMT10061D12 /clone_end=5' /gb=FS668554 /gi=288257591 /ug=Ssc.93326 /len=709"	GO:0016020//membrane	GO:0032561	GO:0001505//regulation of neurotransmitter levels;GO:0035556//intracellular signal transduction;GO:0006810//transport	gi|114052380|ref|NP_001040003.1|/4.51474e-111/ras-related protein Rab-15 [Bos taurus]
gnl|UG|Ssc#S32647959	8	2.3	2	0.57	6	1.8	"Sus scrofa G protein-coupled receptor 54 (GPR54) mRNA, complete cds /cds=p(142,1341) /gb=DQ459346 /gi=92111123 /ug=Ssc.42662 /len=1461"	GO:0016021//integral to membrane	"GO:0008528//peptide receptor activity, G-protein coupled"	GO:0032233//positive regulation of actin filament bundle assembly;GO:0046879//hormone secretion;GO:0015909//long-chain fatty acid transport;GO:0008283//cell proliferation;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0050804//regulation of synaptic transmission;GO:0019932//second-messenger-mediated signaling;GO:0016477//cell migration;GO:0000165//MAPKKK cascade	gi|113205946|ref|NP_001038089.1|/0/kiSS-1 receptor [Sus scrofa]
gnl|UG|Ssc#S35166364	0	0	5	1.43	9	2.7	"Sus scrofa mRNA, clone:OVRM10205E09, expressed in ovary /gb=AK236577 /gi=115553374 /ug=Ssc.16253 /len=2677"	-	-	-	-
gnl|UG|Ssc#S35168922	4715	1357.47	5826	1665.35	3525	1059.36	"Sus scrofa mRNA, clone:OVRM10126F12, expressed in ovary /gb=AK235931 /gi=115550856 /ug=Ssc.40853 /len=1319"	GO:0044424//intracellular part	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006413//translational initiation;GO:0050896//response to stimulus	gi|114667151|ref|XP_511489.2|/2.35604e-64/PREDICTED: similar to isolog of yeast sui1 and rice gos2; putative [Pan troglodytes]
gnl|UG|Ssc#S58305138	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa ATP-binding cassette, sub-family A (ABC1), member 9, transcript variant 1 (ABCA9), mRNA /cds=p(1,4872) /gb=XM_003131258 /gi=311266901 /ug=Ssc.86718 /len=5764"	-	-	-	gi|311266902|ref|XP_003131306.1|/0/PREDICTED: ATP-binding cassette sub-family A member 9-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S46876242	5	1.44	7	2	3	0.9	"PREDICTED: Sus scrofa tousled-like kinase 1 (TLK1), mRNA /cds=p(114,2414) /gb=XM_001927890 /gi=311272614 /ug=Ssc.13037 /len=4447"	GO:0043231//intracellular membrane-bounded organelle	GO:0004672//protein kinase activity;GO:0032559	GO:0006796//phosphate metabolic process;GO:0033554//cellular response to stress;GO:0006333//chromatin assembly or disassembly;GO:0007165//signal transduction;GO:0015031//protein transport;GO:0006464//protein modification process	gi|6633952|dbj|BAA09486.2|/0/KIAA0137 protein [Homo sapiens]
gnl|UG|Ssc#S55327105	75	21.59	61	17.44	99	29.75	"Sus scrofa mRNA, clone:OVR010054E04, expressed in ovary /gb=AK347546 /gi=288576951 /ug=Ssc.896 /len=1901"	GO:0000323//lytic vacuole;GO:0031981//nuclear lumen	GO:0005488//binding;GO:0004180//carboxypeptidase activity;GO:0030234//enzyme regulator activity	GO:0019538//protein metabolic process;GO:0015031//protein transport	gi|158186730|ref|NP_001103385.1|/0/lysosomal protective protein [Canis lupus familiaris]
gnl|UG|Ssc#S23213206	60	17.27	22	6.29	53	15.93	"Sus scrofa clone Clu_32015.scr.msk.p1.Contig1, mRNA sequence /gb=AY609802 /gi=52351372 /ug=Ssc.3581 /len=1628"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0008238//exopeptidase activity;GO:0003723//RNA binding	GO:0019538//protein metabolic process;GO:0044237//cellular metabolic process	gi|297747302|ref|NP_001172115.1|/0/aspartyl aminopeptidase [Sus scrofa]
gnl|UG|Ssc#S43509698	19	5.47	7	2	12	3.61	"Sus scrofa syntaxin 16 (STX16), mRNA /cds=p(458,1375) /gb=NM_001123199 /gi=178056539 /ug=Ssc.23573 /len=2738"	GO:0044464//cell part	GO:0005515//protein binding	GO:0015031//protein transport	gi|178056540|ref|NP_001116671.1|/1.78815e-147/syntaxin-16 [Sus scrofa]
gnl|UG|Ssc#S35169407	29	8.35	23	6.57	24	7.21	"Sus scrofa mRNA, clone:THY010018E09, expressed in thymus /gb=AK238697 /gi=115550432 /ug=Ssc.11233 /len=1188"	-	-	-	gi|311248909|ref|XP_003123371.1|/4.07078e-54/PREDICTED: uncharacterized protein C19orf43-like [Sus scrofa]
gnl|UG|Ssc#S58306777	554	159.5	381	108.91	606	182.12	"PREDICTED: Sus scrofa phosphodiesterase 2A (LOC100037968), mRNA /cds=p(1,2844) /gb=XM_003129623 /gi=311263426 /ug=Ssc.17574 /len=4033"	GO:0044444//cytoplasmic part	"GO:0043169//cation binding;GO:0019002//GMP binding;GO:0004114//3',5'-cyclic-nucleotide phosphodiesterase activity"	GO:0001775//cell activation;GO:0023052//signaling;GO:0009169;GO:0007599//hemostasis;GO:0046058//cAMP metabolic process	"gi|311263427|ref|XP_003129671.1|/0/PREDICTED: cGMP-dependent 3',5'-cyclic phosphodiesterase [Sus scrofa]"
gnl|UG|Ssc#S40189947	0	0	3	0.86	0	0	"rjej08b_g14.y1 jej Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW284854 /gi=182468884 /ug=Ssc.91655 /len=255"	-	-	-	-
gnl|UG|Ssc#S25791156	27	7.77	6	1.72	35	10.52	"Sus scrofa phosphatidylinositol glycan class K (PIGK) mRNA, complete cds /cds=p(25,1212) /gb=AY914076 /gi=62736390 /ug=Ssc.42523 /len=1468"	GO:0030176//integral to endoplasmic reticulum membrane	GO:0004175//endopeptidase activity;GO:0035091//phosphatidylinositol binding	GO:0006457//protein folding;GO:0006497//protein lipidation	gi|73853894|ref|NP_001027529.1|/0/GPI-anchor transamidase precursor [Sus scrofa]
gnl|UG|Ssc#S58308652	3	0.86	7	2	0	0	"PREDICTED: Sus scrofa protein tyrosine phosphatase, receptor type, U (PTPRU), mRNA /cds=p(1,4263) /gb=XM_003127747 /gi=311258811 /ug=Ssc.6396 /len=5420"	GO:0030054//cell junction;GO:0016021//integral to membrane	GO:0004871//signal transducer activity;GO:0004725//protein tyrosine phosphatase activity;GO:0005515//protein binding	GO:0016477//cell migration;GO:0048869;GO:0006470//protein dephosphorylation;GO:0016055//Wnt receptor signaling pathway;GO:0016337//cell-cell adhesion;GO:0007167//enzyme linked receptor protein signaling pathway;GO:0034613//cellular protein localization;GO:0008283//cell proliferation	gi|311258812|ref|XP_003127795.1|/0/PREDICTED: receptor-type tyrosine-protein phosphatase U-like [Sus scrofa]
gnl|UG|Ssc#S20936257	391	112.57	89	25.44	349	104.88	"AJ647980 CSEQRAN19 Sus scrofa cDNA clone C0003263_D23, mRNA sequence /clone=C0003263_D23 /gb=AJ647980 /gi=49324825 /ug=Ssc.74097 /len=480"	GO:0015935//small ribosomal subunit;GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0012502//induction of programmed cell death;GO:0006412//translation;GO:0019080;GO:0048869;GO:0031016//pancreas development	gi|296201954|ref|XP_002748370.1|/5.93415e-80/PREDICTED: 40S ribosomal protein S3a-like [Callithrix jacchus]
gnl|UG|Ssc#S6007085	41	11.8	48	13.72	22	6.61	"306791 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BG385162 /gi=13309634 /ti=448052449 /ug=Ssc.28840 /len=519"	GO:0005903//brush border;GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0005412//glucose:sodium symporter activity	GO:0008645//hexose transport;GO:0044238//primary metabolic process	"gi|194218985|ref|XP_001495531.2|/2.45621e-29/PREDICTED: similar to solute carrier family 5 (sodium/glucose cotransporter), member 2 [Equus caballus]"
gnl|UG|Ssc#S58304467	5	1.44	0	0	3	0.9	"PREDICTED: Sus scrofa dermal papilla-derived protein 6-like (LOC100517780), mRNA /cds=p(343,1245) /gb=XM_003131929 /gi=311268281 /ug=Ssc.60320 /len=1342"	GO:0043231//intracellular membrane-bounded organelle	GO:0005488//binding	-	gi|311268282|ref|XP_003131977.1|/4.57269e-121/PREDICTED: dermal papilla-derived protein 6-like [Sus scrofa]
gnl|UG|Ssc#S58304897	14	4.03	3	0.86	19	5.71	"PREDICTED: Sus scrofa 26S proteasome non-ATPase regulatory subunit 3-like (LOC100512253), mRNA /cds=p(175,1779) /gb=XM_003131496 /gi=311267393 /ug=Ssc.3276 /len=2167"	-	-	-	-
gnl|UG|Ssc#S35167085	2	0.58	2	0.57	2	0.6	"Sus scrofa mRNA, clone:LVRM10041E02, expressed in liver /gb=AK232859 /gi=115552654 /ug=Ssc.18431 /len=1563"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0030695//GTPase regulator activity;GO:0008135//translation factor activity, nucleic acid binding;GO:0032561;GO:0032559"	GO:0006413//translational initiation;GO:0008366//axon ensheathment;GO:0022602//ovulation cycle process;GO:0009725//response to hormone stimulus;GO:0009746;GO:0021782//glial cell development;GO:0006950//response to stress	gi|311261351|ref|XP_003128716.1|/0/PREDICTED: translation initiation factor eIF-2B subunit beta-like [Sus scrofa]
gnl|UG|Ssc#S55319381	4	1.15	0	0	3	0.9	"Sus scrofa mRNA, clone:UTR010019H01, expressed in uterus /gb=AK352185 /gi=288785503 /ug=Ssc.6564 /len=1025"	GO:0031981//nuclear lumen	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0035556//intracellular signal transduction;GO:0006356//regulation of transcription from RNA polymerase I promoter;GO:0009207	gi|311266037|ref|XP_003130942.1|/8.67705e-124/PREDICTED: ras-like protein family member 11A-like [Sus scrofa]
gnl|UG|Ssc#S35170900	21	6.05	38	10.86	17	5.11	"Sus scrofa mRNA, clone:OVRM10071B01, expressed in ovary /gb=AK235342 /gi=115548939 /ug=Ssc.82279 /len=2529"	-	-	-	"gi|73976305|ref|XP_532515.2|/2.07105e-142/PREDICTED: similar to CG14536-PA, isoform A isoform 1 [Canis familiaris]"
gnl|UG|Ssc#S55325398	2	0.58	0	0	3	0.9	"Sus scrofa mRNA, clone:PTG010033E11, expressed in pituitary gland /gb=AK349253 /gi=288779428 /ug=Ssc.79072 /len=4181"	-	-	-	-
gnl|UG|Ssc#S55319059	5	1.44	0	0	6	1.8	"Sus scrofa mRNA, clone:MLN010024H04, expressed in mesenteric lymph nodes /gb=AK346632 /gi=288785825 /ug=Ssc.39645 /len=940"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003677//DNA binding;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	"GO:0006351//transcription, DNA-dependent"	gi|73964316|ref|XP_854763.1|/5.55784e-50/PREDICTED: similar to ATF-like basic leucine zipper transcriptional factor B-ATF (SF-HT-acivated gene-2) (SFA-2) [Canis familiaris]
gnl|UG|Ssc#S58313932	4	1.15	5	1.43	10	3.01	"PREDICTED: Sus scrofa protein phosphatase Slingshot homolog 3-like (LOC100515297), mRNA /cds=p(1,1980) /gb=XM_003122473 /gi=311247164 /ug=Ssc.26056 /len=2638"	GO:0043231//intracellular membrane-bounded organelle;GO:0043232	GO:0008092//cytoskeletal protein binding;GO:0004721//phosphoprotein phosphatase activity	GO:0006470//protein dephosphorylation;GO:0030032//lamellipodium assembly;GO:0030832//regulation of actin filament length;GO:0010769//regulation of cell morphogenesis involved in differentiation	gi|311247165|ref|XP_003122521.1|/0/PREDICTED: protein phosphatase Slingshot homolog 3-like [Sus scrofa]
gnl|UG|Ssc#S6083229	37	10.65	49	14.01	40	12.02	"MI-P-NA-aem-b-11-1-UM.s1 MI-P-NA Sus scrofa cDNA clone MI-P-NA-aem-b-11-1-UM 3', mRNA sequence /clone=MI-P-NA-aem-b-11-1-UM /clone_end=3' /gb=BQ602464 /gi=21549190 /ug=Ssc.82285 /len=680"	-	-	-	-
gnl|UG|Ssc#S46878829	0	0	0	0	9	2.7	"PREDICTED: Sus scrofa aldehyde dehydrogenase 6 family, member A1 (ALDH6A1), mRNA /cds=p(1,1602) /gb=XM_001929173 /gi=311261336 /ug=Ssc.32192 /len=2838"	GO:0031981//nuclear lumen;GO:0044429//mitochondrial part	"GO:0016788//hydrolase activity, acting on ester bonds;GO:0016620//oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;GO:0005504//fatty acid binding"	GO:0006573//valine metabolic process;GO:0009063//cellular amino acid catabolic process;GO:0006208//pyrimidine base catabolic process;GO:0045444//fat cell differentiation	"gi|194038542|ref|XP_001929208.1|/0/PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S58309859	48	13.82	76	21.72	22	6.61	"PREDICTED: Sus scrofa zinc finger protein 384-like, transcript variant 1 (LOC100516975), mRNA /cds=p(1,1707) /gb=XM_003126536 /gi=311256296 /ug=Ssc.21652 /len=2942"	GO:0005924//cell-substrate adherens junction;GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0019904//protein domain specific binding;GO:0003676//nucleic acid binding;GO:0016563//transcription activator activity	GO:0051169//nuclear transport	gi|311256297|ref|XP_003126584.1|/0/PREDICTED: zinc finger protein 384-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58308604	220	63.34	161	46.02	93	27.95	"PREDICTED: Sus scrofa splicing factor 3a, subunit 3, 60kDa (SF3A3), mRNA /cds=p(160,1665) /gb=XM_003127795 /gi=311258909 /ug=Ssc.11044 /len=1899"	GO:0005681//spliceosomal complex;GO:0016604//nuclear body	GO:0046914//transition metal ion binding	GO:0006376//mRNA splice site selection	gi|73974442|ref|XP_849980.1|/0/PREDICTED: similar to Splicing factor 3A subunit 3 (Spliceosome associated protein 61) (SAP 61) (SF3a60) [Canis familiaris]
gnl|UG|Ssc#S58315134	3	0.86	0	0	4	1.2	"PREDICTED: Sus scrofa potassium voltage-gated channel, KQT-like subfamily, member 5, transcript variant 2 (KCNQ5), mRNA /cds=p(1,2826) /gb=XM_003121265 /gi=311244106 /ug=Ssc.52004 /len=3222"	GO:0005887//integral to plasma membrane	GO:0005249//voltage-gated potassium channel activity	GO:0065003;GO:0007267//cell-cell signaling;GO:0030001//metal ion transport	gi|311244107|ref|XP_003121313.1|/0/PREDICTED: potassium voltage-gated channel subfamily KQT member 5 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58311611	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa PHD finger protein 2-like (LOC100514572), mRNA /cds=p(1,3558) /gb=XM_003124794 /gi=311251912 /ug=Ssc.25275 /len=3558"	GO:0031981//nuclear lumen	GO:0032452//histone demethylase activity;GO:0042393//histone binding;GO:0046914//transition metal ion binding	GO:0070076//histone lysine demethylation;GO:0031936//negative regulation of chromatin silencing	gi|311251913|ref|XP_003124842.1|/0/PREDICTED: PHD finger protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58308446	10	2.88	8	2.29	5	1.5	"PREDICTED: Sus scrofa dedicator of cytokinesis protein 7-like (LOC100524027), mRNA /cds=p(1,2955) /gb=XM_003127957 /gi=311259232 /ug=Ssc.5893 /len=3893"	GO:0030427//site of polarized growth;GO:0043005//neuron projection	GO:0032561;GO:0030695//GTPase regulator activity;GO:0017048//Rho GTPase binding	GO:0001934//positive regulation of protein phosphorylation;GO:0007010//cytoskeleton organization;GO:0032855//positive regulation of Rac GTPase activity;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0030030//cell projection organization;GO:0030010//establishment of cell polarity	gi|311259233|ref|XP_003128005.1|/0/PREDICTED: dedicator of cytokinesis protein 7-like [Sus scrofa]
gnl|UG|Ssc#S36162734	3	0.86	6	1.72	5	1.5	"Sus scrofa kruppel-like factor 5 (KLF5) mRNA, complete cds /cds=p(1,1374) /gb=DQ682407 /gi=110007346 /ug=Ssc.33759 /len=1374"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity	"GO:0048646//anatomical structure formation involved in morphogenesis;GO:0006351//transcription, DNA-dependent;GO:0008283//cell proliferation;GO:0030031//cell projection assembly"	gi|148230691|ref|NP_001090958.1|/0/Krueppel-like factor 5 [Sus scrofa]
gnl|UG|Ssc#S58315147	10	2.88	3	0.86	3	0.9	"PREDICTED: Sus scrofa PHD finger protein 3 (PHF3), mRNA /cds=p(1,5982) /gb=XM_003121259 /gi=311244079 /ug=Ssc.45149 /len=6267"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	GO:0032501//multicellular organismal process	gi|311244080|ref|XP_003121307.1|/0/PREDICTED: PHD finger protein 3-like [Sus scrofa]
gnl|UG|Ssc#S22415863	3	0.86	0	0	0	0	"Sus scrofa signal transducer and activator of transcription 5A (STAT5A), mRNA /cds=p(55,2454) /gb=NM_214290 /gi=55741759 /ug=Ssc.93778 /len=2518"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0060089;GO:0035258//steroid hormone receptor binding;GO:0046872//metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding	GO:0001779//natural killer cell differentiation;GO:0042108//positive regulation of cytokine biosynthetic process;GO:0072350;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0010876;GO:0007346//regulation of mitotic cell cycle;GO:0043648//dicarboxylic acid metabolic process;GO:0002260//lymphocyte homeostasis;GO:0048732//gland development;GO:0045638//negative regulation of myeloid cell differentiation;GO:0001912//positive regulation of leukocyte mediated cytotoxicity;GO:0032787//monocarboxylic acid metabolic process;GO:0031349//positive regulation of defense response;GO:0006599;GO:0035264//multicellular organism growth;GO:0007259//JAK-STAT cascade;GO:0002009//morphogenesis of an epithelium;GO:0008207//C21-steroid hormone metabolic process;GO:0007589//body fluid secretion;GO:0033024;GO:0045582//positive regulation of T cell differentiation;GO:0045577//regulation of B cell differentiation;GO:0006790//sulfur compound metabolic process;GO:0001787//natural killer cell proliferation;GO:0043627//response to estrogen stimulus;GO:0009081//branched chain family amino acid metabolic process;GO:0045136//development of secondary sexual characteristics;GO:0022602//ovulation cycle process;GO:0007166//cell surface receptor linked signaling pathway;GO:0007155//cell adhesion;GO:0030855//epithelial cell differentiation;GO:0010628//positive regulation of gene expression;GO:0002763//positive regulation of myeloid leukocyte differentiation;GO:0034097//response to cytokine stimulus;GO:0006468//protein phosphorylation;GO:0048537//mucosal-associated lymphoid tissue development;GO:0042102//positive regulation of T cell proliferation	gi|55741760|ref|NP_999455.1|/0/signal transducer and activator of transcription 5A [Sus scrofa]
gnl|UG|Ssc#S34501154	4	1.15	18	5.15	6	1.8	"DB813453 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10094E02 /clone_end=3' /gb=DB813453 /gi=112777551 /ug=Ssc.94562 /len=816"	GO:0031224//intrinsic to membrane	-	-	gi|311244453|ref|XP_003121452.1|/1.90084e-53/PREDICTED: cell cycle control protein 50A-like [Sus scrofa]
gnl|UG|Ssc#S27602897	2	0.58	0	0	0	0	"EST-AR191H06 Porcine Peripheral Blood Cell cDNA library Sus scrofa cDNA clone AR191H06, mRNA sequence /clone=AR191H06 /gb=DV228224 /gi=77597214 /ug=Ssc.87896 /len=702"	GO:0031224//intrinsic to membrane	-	GO:0012501//programmed cell death	gi|157817931|ref|NP_001101710.1|/1.15598e-111/cleft lip and palate transmembrane protein 1-like protein [Rattus norvegicus] 
gnl|UG|Ssc#S58307992	9	2.59	6	1.72	17	5.11	"PREDICTED: Sus scrofa ubiquitin protein ligase E3 component n-recognin 2 (UBR2), mRNA /cds=p(239,5506) /gb=XM_003128426 /gi=311260439 /ug=Ssc.37356 /len=6270"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0016020//membrane	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0019941//modification-dependent protein catabolic process;GO:0007127//meiosis I;GO:0048232//male gamete generation	gi|311260440|ref|XP_003128474.1|/0/PREDICTED: e3 ubiquitin-protein ligase UBR2-like [Sus scrofa]
gnl|UG|Ssc#S55322957	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:DCI010009G08, expressed in dendritic cells (immature) /gb=AK344325 /gi=288781915 /ug=Ssc.5597 /len=1824"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016788//hydrolase activity, acting on ester bonds;GO:0043169//cation binding"	-	gi|311247913|ref|XP_003122875.1|/4.94181e-180/PREDICTED: putative nuclease HARBI1-like [Sus scrofa]
gnl|UG|Ssc#S58314555	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa solute carrier family 38, member 6 (SLC38A6), mRNA /cds=p(132,1502) /gb=XM_003121847 /gi=311245615 /ug=Ssc.41170 /len=2807"	GO:0031224//intrinsic to membrane	-	GO:0030001//metal ion transport;GO:0015837//amine transport	gi|311245616|ref|XP_003121895.1|/0/PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Sus scrofa]
gnl|UG|Ssc#S26718922	92	26.49	44	12.58	81	24.34	"AJ955006 KN404_1 Sus scrofa cDNA clone C0007744e16 3', mRNA sequence /clone=C0007744e16 /clone_end=3' /gb=AJ955006 /gi=74371822 /ug=Ssc.87700 /len=883"	-	-	-	-
gnl|UG|Ssc#S58311891	24	6.91	5	1.43	5	1.5	"PREDICTED: Sus scrofa zinc finger protein Xfin-like (LOC100515603), mRNA /cds=p(257,3667) /gb=XM_003124510 /gi=311251325 /ug=Ssc.19343 /len=3925"	-	-	-	gi|311251326|ref|XP_003124558.1|/0/PREDICTED: zinc finger protein Xfin-like [Sus scrofa]
gnl|UG|Ssc#S35168568	26	7.49	2	0.57	11	3.31	"Sus scrofa mRNA, clone:LVR010073A12, expressed in liver /gb=AK232555 /gi=115551122 /ug=Ssc.48416 /len=2256"	GO:0031966//mitochondrial membrane;GO:0019866//organelle inner membrane;GO:0042598//vesicular fraction	"GO:0003676//nucleic acid binding;GO:0016649//oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor;GO:0050662//coenzyme binding"	"GO:0000737//DNA catabolic process, endonucleolytic;GO:0019725//cellular homeostasis;GO:0008629//induction of apoptosis by intracellular signals"	"gi|311276941|ref|XP_003135418.1|/0/PREDICTED: apoptosis-inducing factor 1, mitochondrial-like isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S58311058	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa peptidyl-prolyl cis-trans isomerase FKBP1B-like, transcript variant 2 (LOC100522131), mRNA /cds=p(91,333) /gb=XM_003125366 /gi=311253037 /ug=Ssc.4389 /len=939"	GO:0005789//endoplasmic reticulum membrane;GO:0034703//cation channel complex;GO:0042598//vesicular fraction	GO:0005515//protein binding;GO:0000166//nucleotide binding;GO:0005527//macrolide binding;GO:0016859//cis-trans isomerase activity;GO:0005218//intracellular ligand-gated calcium channel activity	GO:0002027//regulation of heart rate;GO:0032512;GO:0006457//protein folding;GO:0018193//peptidyl-amino acid modification;GO:0007417//central nervous system development;GO:0010880//regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum;GO:0033189//response to vitamin A;GO:0032412;GO:0006936//muscle contraction;GO:0000302//response to reactive oxygen species;GO:0042110//T cell activation;GO:0009790//embryo development;GO:0030323//respiratory tube development;GO:0030072//peptide hormone secretion;GO:0048736;GO:0050877//neurological system process;GO:0009746	gi|114576642|ref|XP_001144201.1|/1.8459e-53/PREDICTED: similar to peptidyl-prolyl cis-trans isomerase; PPIase [Pan troglodytes]
gnl|UG|Ssc#S46880411	30	8.64	22	6.29	24	7.21	"PREDICTED: Sus scrofa TTK protein kinase (TTK), mRNA /cds=p(134,2530) /gb=XM_001925673 /gi=311244426 /ug=Ssc.38754 /len=2853"	GO:0015630//microtubule cytoskeleton	GO:0005515//protein binding;GO:0004672//protein kinase activity;GO:0032559	GO:0001934//positive regulation of protein phosphorylation;GO:0000226//microtubule cytoskeleton organization;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0008283//cell proliferation	gi|194035252|ref|XP_001925708.1|/0/PREDICTED: dual specificity protein kinase TTK [Sus scrofa]
gnl|UG|Ssc#S20946399	0	0	0	0	0	0	"AJ658122 KN277 Sus scrofa cDNA clone C0005211_C07, mRNA sequence /clone=C0005211_C07 /gb=AJ658122 /gi=49342191 /ug=Ssc.71913 /len=503"	GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0016882//cyclo-ligase activity;GO:0032559	GO:0006760//folic acid-containing compound metabolic process	"gi|73951703|ref|XP_852666.1|/3.26061e-29/PREDICTED: similar to 5-formyltetrahydrofolate cyclo-ligase (5,10-methenyl-tetrahydrofolate synthetase) (Methenyl-THF synthetase) (MTHFS) [Canis familiaris]"
gnl|UG|Ssc#S58314914	0	0	2	0.57	2	0.6	"PREDICTED: Sus scrofa DNA-binding protein RFX7-like (LOC100514143), mRNA /cds=p(1,4281) /gb=XM_003121494 /gi=311244679 /ug=Ssc.94193 /len=4281"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|311244680|ref|XP_003121542.1|/0/PREDICTED: DNA-binding protein RFX7-like [Sus scrofa]
gnl|UG|Ssc#S55318252	25	7.2	22	6.29	30	9.02	"Sus scrofa lactate dehydrogenase A (LDHA), mRNA /cds=p(109,1107) /gb=NM_001172363 /gi=288860135 /ug=Ssc.50275 /len=1711"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0042995//cell projection	GO:0005488//binding;GO:0004457//lactate dehydrogenase activity	GO:0007154//cell communication;GO:0006007//glucose catabolic process	gi|288860136|ref|NP_001165834.1|/0/L-lactate dehydrogenase A chain [Sus scrofa]
gnl|UG|Ssc#S58304053	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa ER degradation-enhancing alpha-mannosidase-like 1-like (LOC100515861), mRNA /cds=p(119,748) /gb=XM_003132344 /gi=311269212 /ug=Ssc.77877 /len=748"	GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0005515//protein binding;GO:0015923//mannosidase activity	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0006487//protein N-linked glycosylation	gi|311269213|ref|XP_003132392.1|/1.91172e-78/PREDICTED: ER degradation-enhancing alpha-mannosidase-like 1-like [Sus scrofa]
gnl|UG|Ssc#S58303397	3	0.86	3	0.86	0	0	"PREDICTED: Sus scrofa leucine-zipper-like transcriptional regulator 1-like (LOC100525839), mRNA /cds=p(55,2577) /gb=XM_003132997 /gi=311271058 /ug=Ssc.54948 /len=3864"	-	GO:0001071//nucleic acid binding transcription factor activity	GO:0010467//gene expression;GO:0032502//developmental process	gi|311271059|ref|XP_003133045.1|/0/PREDICTED: leucine-zipper-like transcriptional regulator 1-like [Sus scrofa]
gnl|UG|Ssc#S35171620	22	6.33	7	2	6	1.8	"Sus scrofa mRNA, clone:ITT010086D02, expressed in intestine /gb=AK231525 /gi=115548215 /ug=Ssc.21632 /len=2448"	GO:0005774//vacuolar membrane;GO:0005624//membrane fraction;GO:0033176;GO:0005768//endosome;GO:0033267//axon part;GO:0044459//plasma membrane part;GO:0030136//clathrin-coated vesicle	"GO:0005515//protein binding;GO:0003676//nucleic acid binding;GO:0015077//monovalent inorganic cation transmembrane transporter activity;GO:0004812//aminoacyl-tRNA ligase activity;GO:0015662//ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"	"GO:0007417//central nervous system development;GO:0010467//gene expression;GO:0015988//energy coupled proton transport, against electrochemical gradient;GO:0015031//protein transport;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006875//cellular metal ion homeostasis"	gi|156121241|ref|NP_001095768.1|/1.16324e-150/leucine-rich repeat-containing protein 47 [Bos taurus]
gnl|UG|Ssc#S58304142	420	120.92	295	84.33	681	204.66	"PREDICTED: Sus scrofa protein polybromo-1-like (LOC100525781), mRNA /cds=p(1,5037) /gb=XM_003132257 /gi=311269004 /ug=Ssc.30830 /len=5115"	GO:0005694//chromosome	GO:0005488//binding	GO:0016568//chromatin modification;GO:0008283//cell proliferation;GO:0000087//M phase of mitotic cell cycle	gi|311269005|ref|XP_003132305.1|/0/PREDICTED: protein polybromo-1-like [Sus scrofa]
gnl|UG|Ssc#S46876265	29	8.35	5	1.43	15	4.51	"PREDICTED: Sus scrofa tubulin, alpha 4a (TUBA4A), mRNA /cds=p(1,1857) /gb=XM_001928335 /gi=311273100 /ug=Ssc.4742 /len=2536"	GO:0032991//macromolecular complex;GO:0015630//microtubule cytoskeleton;GO:0044444//cytoplasmic part	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0005198//structural molecule activity	GO:0001775//cell activation;GO:0022402//cell cycle process;GO:0007010//cytoskeleton organization;GO:0006887//exocytosis;GO:0043623//cellular protein complex assembly;GO:0009207;GO:0007017//microtubule-based process;GO:0007599//hemostasis;GO:0006458//'de novo' protein folding	gi|311273101|ref|XP_001928370.2|/0/PREDICTED: tubulin alpha-4A chain [Sus scrofa]
gnl|UG|Ssc#S58304715	55	15.83	15	4.29	34	10.22	"PREDICTED: Sus scrofa peptidyl-tRNA hydrolase 2, mitochondrial-like, transcript variant 3 (LOC100519562), mRNA /cds=p(706,1245) /gb=XM_003131668 /gi=311267770 /ug=Ssc.94260 /len=1540"	GO:0043231//intracellular membrane-bounded organelle	GO:0004091//carboxylesterase activity	GO:0010467//gene expression;GO:0012501//programmed cell death	"gi|311267765|ref|XP_003131714.1|/1.00434e-90/PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial-like isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S55323649	12	3.45	15	4.29	33	9.92	"Sus scrofa mRNA, clone:SPL010045G03, expressed in spleen /gb=AK350362 /gi=288781223 /ug=Ssc.5592 /len=1946"	GO:0015630//microtubule cytoskeleton;GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0046914//transition metal ion binding;GO:0008289//lipid binding;GO:0015631//tubulin binding;GO:0004661//protein geranylgeranyltransferase activity;GO:0030545	GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway;GO:0010557;GO:0010558;GO:0010033//response to organic substance;GO:0018342//protein prenylation;GO:0008283//cell proliferation;GO:0051345//positive regulation of hydrolase activity;GO:0051726//regulation of cell cycle;GO:0006915//apoptosis;GO:0090042//tubulin deacetylation;GO:0043112//receptor metabolic process	gi|73979092|ref|XP_532786.2|/0/PREDICTED: similar to Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransferase alpha subunit) (GGTase-I-... iso [Canis familiaris]
gnl|UG|Ssc#S43678667	33	9.5	9	2.57	33	9.92	"Sus scrofa AXL mRNA for AXL receptor tyrosine kinase, complete cds /cds=p(66,2729) /gb=AB364504 /gi=183223978 /ug=Ssc.30805 /len=4208"	GO:0016021//integral to membrane	GO:0004871//signal transducer activity;GO:0004713//protein tyrosine kinase activity;GO:0017022//myosin binding;GO:0046983//protein dimerization activity;GO:0032559;GO:0019900//kinase binding	GO:0007166//cell surface receptor linked signaling pathway;GO:0006909//phagocytosis;GO:0009888//tissue development;GO:0048511//rhythmic process;GO:0007243//intracellular protein kinase cascade;GO:0048771//tissue remodeling;GO:0034614//cellular response to reactive oxygen species;GO:0001818//negative regulation of cytokine production;GO:0006796//phosphate metabolic process;GO:0048608//reproductive structure development;GO:0007154//cell communication;GO:0002695;GO:0000904//cell morphogenesis involved in differentiation;GO:0048872//homeostasis of number of cells;GO:0009887//organ morphogenesis;GO:0048232//male gamete generation;GO:0006464//protein modification process;GO:0030098//lymphocyte differentiation;GO:0006952//defense response;GO:0016477//cell migration;GO:0046903//secretion;GO:0043066//negative regulation of apoptosis	gi|190360643|ref|NP_001121930.1|/0/tyrosine-protein kinase receptor UFO [Sus scrofa]
gnl|UG|Ssc#S58311092	0	0	7	2	0	0	"PREDICTED: Sus scrofa cytosolic carboxypeptidase-like protein 5-like (LOC100523841), mRNA /cds=p(183,2855) /gb=XM_003125304 /gi=311252967 /ug=Ssc.17597 /len=2855"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0008235//metalloexopeptidase activity;GO:0046914//transition metal ion binding;GO:0008092//cytoskeletal protein binding	GO:0035608//protein deglutamylation	gi|311252968|ref|XP_003125352.1|/0/PREDICTED: LOW QUALITY PROTEIN: cytosolic carboxypeptidase-like protein 5-like [Sus scrofa]
gnl|UG|Ssc#S35173248	2	0.58	3	0.86	0	0	"Sus scrofa mRNA, clone:OVR010059G12, expressed in ovary /gb=AK234425 /gi=115546587 /ug=Ssc.42952 /len=1609"	GO:0044464//cell part	GO:0046914//transition metal ion binding	-	gi|194219978|ref|XP_001504551.2|/0/PREDICTED: similar to Zinc finger protein 608 (Renal carcinoma antigen NY-REN-36) [Equus caballus]
gnl|UG|Ssc#S26718999	10	2.88	34	9.72	24	7.21	"AJ955083 KN404_1 Sus scrofa cDNA clone C0007744o16 3', mRNA sequence /clone=C0007744o16 /clone_end=3' /gb=AJ955083 /gi=74371899 /ug=Ssc.36478 /len=873"	-	-	-	-
gnl|UG|Ssc#S18550832	3	0.86	0	0	4	1.2	"BX919483 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0004.j.09 5prim, mRNA sequence /clone=scan0004.j.09 /clone_end=5' /gb=BX919483 /gi=90233075 /ug=Ssc.34306 /len=846"	GO:0043232;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0009987//cellular process;GO:0019216//regulation of lipid metabolic process	gi|148225699|ref|NP_001091542.1|/1.07452e-104/retinoblastoma-like protein 2 [Bos taurus]
gnl|UG|Ssc#S34531694	112	32.25	78	22.3	178	53.49	"DB805909 full-length enriched swine cDNA library, adult skin Sus scrofa cDNA clone SKNB10098F05 5', mRNA sequence /clone=SKNB10098F05 /clone_end=5' /gb=DB805909 /gi=112769021 /ug=Ssc.89936 /len=828"	GO:0015935//small ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0010467//gene expression;GO:0007049//cell cycle;GO:0022613//ribonucleoprotein complex biogenesis	gi|109126207|ref|XP_001091975.1|/3.05627e-06/PREDICTED: 40S ribosomal protein S18-like isoform 2 [Macaca mulatta]
gnl|UG|Ssc#S46880216	10	2.88	22	6.29	14	4.21	"PREDICTED: Sus scrofa trichorhinophalangeal syndrome I (TRPS1), mRNA /cds=p(1,3885) /gb=XM_001928610 /gi=311253468 /ug=Ssc.32009 /len=3885"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0002062//chondrocyte differentiation;GO:0006606//protein import into nucleus	gi|194035660|ref|XP_001928645.1|/0/PREDICTED: zinc finger transcription factor Trps1 [Sus scrofa]
gnl|UG|Ssc#S35171456	2	0.58	2	0.57	0	0	"Sus scrofa mRNA, clone:OVRM10040B02, expressed in ovary /gb=AK235000 /gi=115548383 /ug=Ssc.17332 /len=2245"	-	-	-	-
gnl|UG|Ssc#S27600747	22	6.33	9	2.57	20	6.01	"EST-AR164G09 Porcine Peripheral Blood Cell cDNA library Sus scrofa cDNA clone AR164G09, mRNA sequence /clone=AR164G09 /gb=DV226074 /gi=77593194 /ug=Ssc.81854 /len=678"	-	-	-	-
gnl|UG|Ssc#S58310634	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa sorting nexin-27-like (LOC100516009), mRNA /cds=p(5,1630) /gb=XM_003125761 /gi=311254312 /ug=Ssc.82776 /len=2194"	GO:0005768//endosome	GO:0005543//phospholipid binding	GO:0048731;GO:0006810//transport;GO:0042221//response to chemical stimulus;GO:0009987//cellular process;GO:0023052//signaling	gi|311254313|ref|XP_003125809.1|/0/PREDICTED: sorting nexin-27-like [Sus scrofa]
gnl|UG|Ssc#S46876850	4	1.15	0	0	4	1.2	"PREDICTED: Sus scrofa chondroitin sulfate N-acetylgalactosaminyltransferase 2 (CSGALNACT2), mRNA /cds=p(1,1629) /gb=XM_001926417 /gi=311271216 /ug=Ssc.80354 /len=1629"	GO:0031228//intrinsic to Golgi membrane;GO:0000267//cell fraction	GO:0043169//cation binding;GO:0008376//acetylgalactosaminyltransferase activity	GO:0043062//extracellular structure organization;GO:0006024//glycosaminoglycan biosynthetic process;GO:0050650//chondroitin sulfate proteoglycan biosynthetic process;GO:0048731;GO:0006040//amino sugar metabolic process;GO:0015012//heparan sulfate proteoglycan biosynthetic process;GO:0019585//glucuronate metabolic process;GO:0033692//cellular polysaccharide biosynthetic process	gi|311271217|ref|XP_001926452.2|/0/PREDICTED: chondroitin sulfate N-acetylgalactosaminyltransferase 2 [Sus scrofa]
gnl|UG|Ssc#S58310374	28	8.06	71	20.3	48	14.43	"PREDICTED: Sus scrofa probable ATP-dependent RNA helicase DDX17-like (LOC100514347), mRNA /cds=p(1,2406) /gb=XM_003126050 /gi=311255075 /ug=Ssc.26640 /len=2582"	GO:0043231//intracellular membrane-bounded organelle	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0004386//helicase activity;GO:0032559"	GO:0009207;GO:0010467//gene expression	gi|311255076|ref|XP_003126098.1|/0/PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Sus scrofa]
gnl|UG|Ssc#S55325238	8	2.3	0	0	2	0.6	"Sus scrofa mRNA, clone:PTG010066F04, expressed in pituitary gland /gb=AK349413 /gi=288779588 /ug=Ssc.5167 /len=2868"	GO:0000776//kinetochore;GO:0044444//cytoplasmic part;GO:0000267//cell fraction;GO:0005819//spindle;GO:0005635//nuclear envelope	GO:0005099//Ras GTPase activator activity;GO:0005488//binding	GO:0023052//signaling;GO:0007067//mitosis	gi|297261157|ref|XP_001099367.2|/0/PREDICTED: ran GTPase-activating protein 1 isoform 1 [Macaca mulatta]
gnl|UG|Ssc#S23213091	1075	309.5	567	162.08	1212	364.24	"Sus scrofa clone Clu_4372.scr.msk.p1.Contig4, mRNA sequence /gb=AY609917 /gi=52351487 /ug=Ssc.54060 /len=1670"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0030528//transcription regulator activity;GO:0003723//RNA binding;GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0043566//structure-specific DNA binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0008283//cell proliferation;GO:0008203//cholesterol metabolic process	"gi|148666815|gb|EDK99231.1|/1.03541e-104/cellular nucleic acid binding protein, isoform CRA_d [Mus musculus]"
gnl|UG|Ssc#S23213023	7	2.02	0	0	6	1.8	"Sus scrofa clone Clu_5208.scr.msk.p1.Contig1, mRNA sequence /gb=AY609985 /gi=52351555 /ug=Ssc.72381 /len=1659"	GO:0005856//cytoskeleton;GO:0016021//integral to membrane;GO:0031981//nuclear lumen;GO:0005635//nuclear envelope	GO:0022829//wide pore channel activity	GO:0044238//primary metabolic process;GO:0050658//RNA transport;GO:0015758//glucose transport	gi|149730783|ref|XP_001501522.1|/1.51033e-180/PREDICTED: similar to nucleoporin 35kDa [Equus caballus]
gnl|UG|Ssc#S35173315	180	51.82	242	69.18	157	47.18	"Sus scrofa mRNA, clone:OVR010046G02, expressed in ovary /gb=AK234357 /gi=115546520 /ug=Ssc.51853 /len=1141"	GO:0015935//small ribosomal subunit	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0019080;GO:0006448//regulation of translational elongation;GO:0031016//pancreas development	gi|13904870|ref|NP_001000.2|/5.78278e-111/40S ribosomal protein S5 [Homo sapiens]
gnl|UG|Ssc#S18387539	19	5.47	8	2.29	12	3.61	"938969 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK467652 /gi=40838929 /ug=Ssc.24203 /len=847"	GO:0031981//nuclear lumen;GO:0016020//membrane;GO:0031988//membrane-bounded vesicle;GO:0031410//cytoplasmic vesicle;GO:0042995//cell projection;GO:0043232	GO:0000166//nucleotide binding;GO:0004672//protein kinase activity	GO:0007010//cytoskeleton organization;GO:0043410//positive regulation of MAPKKK cascade;GO:0012501//programmed cell death;GO:0006605//protein targeting;GO:0048870//cell motility;GO:0007044//cell-substrate junction assembly;GO:0016049//cell growth	gi|73958449|ref|XP_547063.2|/2.83003e-63/PREDICTED: similar to TAO kinase 2 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S31105790	2	0.58	0	0	0	0	"1513401 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY409628 /gi=87210931 /ug=Ssc.41059 /len=691"	GO:0016604//nuclear body	"GO:0003676//nucleic acid binding;GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0006396//RNA processing	gi|114601933|ref|XP_517939.2|/2.10464e-107/PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Pan troglodytes]
gnl|UG|Ssc#S58301110	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa protein FAM199X-like (LOC100510996), mRNA /cds=p(124,1290) /gb=XM_003135275 /gi=311276728 /ug=Ssc.83169 /len=1504"	-	-	-	gi|74008473|ref|XP_852625.1|/2.67172e-173/PREDICTED: hypothetical protein XP_847532 [Canis familiaris]
gnl|UG|Ssc#S29975013	98	28.21	37	10.58	145	43.58	"PDUts1094A08 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1094A08 3' similar to homologue to ref|NM_005796.1| Homo sapiens nuclear transport factor 2 (NUTF2), mRNA, mRNA sequence /clone=PDUts1094A08 /clone_end=3' /gb=CV871671 /gi=84125631 /ug=Ssc.88383 /len=182"	-	-	-	-
gnl|UG|Ssc#S22284485	2	0.58	0	0	0	0	"CJ027215 full-length enriched swine cDNA library, adult trachea Sus scrofa cDNA clone TCH01B020067 5', mRNA sequence /clone=TCH01B020067 /clone_end=5' /gb=CJ027215 /gi=54538070 /ug=Ssc.45276 /len=796"	GO:0044464//cell part	GO:0004871//signal transducer activity;GO:0019787//small conjugating protein ligase activity	GO:0016567//protein ubiquitination	gi|194211394|ref|XP_001915845.1|/2.5397e-148/PREDICTED: thyroid hormone receptor interactor 12 isoform 3 [Equus caballus]
gnl|UG|Ssc#S55319915	52	14.97	17	4.86	89	26.75	"Sus scrofa mRNA, clone:THY010098C04, expressed in thymus /gb=AK351850 /gi=288784969 /ug=Ssc.6644 /len=1197"	-	-	-	-
gnl|UG|Ssc#S19549536	2	0.58	2	0.57	0	0	"996074 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN165640 /gi=46180070 /ug=Ssc.2216 /len=810"	-	-	-	-
gnl|UG|Ssc#S29980256	11	3.17	0	0	8	2.4	"PDUts1157H06 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1157H06 5' similar to homologue to ref|NM_014117.2| Homo sapiens PRO0149 protein (PRO0149), mRNA, mRNA sequence /clone=PDUts1157H06 /clone_end=5' /gb=CV876914 /gi=84130874 /ug=Ssc.5857 /len=647"	-	-	-	gi|301768639|ref|XP_002919742.1|/5.42689e-70/PREDICTED: UPF0472 protein C16orf72-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S23757503	53	15.26	141	40.3	30	9.02	"1114551 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN115122 /gi=59809368 /ug=Ssc.60212 /len=872"	GO:0005856//cytoskeleton;GO:0030136//clathrin-coated vesicle;GO:0033267//axon part	GO:0019899//enzyme binding;GO:0046983//protein dimerization activity	GO:0043087//regulation of GTPase activity;GO:0030154//cell differentiation;GO:0030100//regulation of endocytosis	"gi|148664645|gb|EDK97061.1|/1.41259e-89/bridging integrator 1, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S35170969	122	35.12	213	60.89	100	30.05	"Sus scrofa mRNA, clone:OVRM10064B06, expressed in ovary /gb=AK235273 /gi=115548870 /ug=Ssc.53995 /len=1238"	GO:0005626//insoluble fraction;GO:0005774//vacuolar membrane;GO:0012505//endomembrane system	GO:0004871//signal transducer activity;GO:0019899//enzyme binding;GO:0005102//receptor binding;GO:0015631//tubulin binding	GO:0043462//regulation of ATPase activity;GO:0048193//Golgi vesicle transport	gi|114663750|ref|XP_511114.2|/1.19919e-72/PREDICTED: similar to GABARAPL2 protein [Pan troglodytes]
gnl|UG|Ssc#S46880246	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa metastasis suppressor 1 (MTSS1), mRNA /cds=p(1,1896) /gb=XM_001925489 /gi=311253400 /ug=Ssc.71819 /len=2132"	GO:0005856//cytoskeleton;GO:0031252//cell leading edge;GO:0016023//cytoplasmic membrane-bounded vesicle	"GO:0030674//protein binding, bridging;GO:0003779//actin binding;GO:0019904//protein domain specific binding"	GO:0030035//microspike assembly;GO:0007167//enzyme linked receptor protein signaling pathway;GO:0008154//actin polymerization or depolymerization;GO:0048513//organ development	gi|311253401|ref|XP_001925524.2|/0/PREDICTED: metastasis suppressor protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58315190	16	4.61	10	2.86	22	6.61	"PREDICTED: Sus scrofa enoyl-CoA hydratase domain-containing protein 1-like (LOC100512509), mRNA /cds=p(52,954) /gb=XM_003121214 /gi=311243978 /ug=Ssc.1146 /len=2655"	-	-	-	gi|311243979|ref|XP_003121262.1|/9.15571e-165/PREDICTED: enoyl-CoA hydratase domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35168717	5	1.44	4	1.14	3	0.9	"Sus scrofa mRNA, clone:THY010035F09, expressed in thymus /gb=AK238834 /gi=115550973 /ug=Ssc.19206 /len=2979"	GO:0044464//cell part	"GO:0016763//transferase activity, transferring pentosyl groups"	-	gi|311273672|ref|XP_003133980.1|/0/PREDICTED: poly [ADP-ribose] polymerase 8-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S18360888	4	1.15	0	0	2	0.6	"917063 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK456390 /gi=40803604 /ug=Ssc.84603 /len=776"	-	-	-	-
gnl|UG|Ssc#S23767221	645	185.7	1930	551.69	328	98.57	"1138643 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN124840 /gi=59819119 /ug=Ssc.56114 /len=851"	-	-	-	gi|301765586|ref|XP_002918214.1|/5.43951e-06/PREDICTED: heterogeneous nuclear ribonucleoprotein U-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S30930820	2	0.58	0	0	3	0.9	"Sus scrofa netrin-1 mRNA, complete cds /cds=p(131,1933) /gb=DQ368597 /gi=86143155 /ug=Ssc.22870 /len=2046"	GO:0044424//intracellular part;GO:0005578//proteinaceous extracellular matrix	GO:0005488//binding	GO:0001525//angiogenesis;GO:0030307//positive regulation of cell growth;GO:0007155//cell adhesion;GO:0012501//programmed cell death;GO:0051647//nucleus localization;GO:0008283//cell proliferation;GO:0048732//gland development;GO:0031175//neuron projection development;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0030308//negative regulation of cell growth;GO:0006935//chemotaxis;GO:0060562;GO:0016477//cell migration	gi|113205636|ref|NP_001038013.1|/0/netrin-1 precursor [Sus scrofa]
gnl|UG|Ssc#S46877355	134	38.58	217	62.03	104	31.25	"PREDICTED: Sus scrofa budding uninhibited by benzimidazoles 3 homolog (yeast), transcript variant 2 (BUB3), mRNA /cds=p(110,1090) /gb=XM_001928045 /gi=194041607 /ug=Ssc.9930 /len=1435"	GO:0031981//nuclear lumen;GO:0000776//kinetochore;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0000819//sister chromatid segregation;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0031577//spindle checkpoint;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0051313//attachment of spindle microtubules to chromosome	gi|31560618|ref|NP_033904.2|/0/mitotic checkpoint protein BUB3 [Mus musculus]
gnl|UG|Ssc#S26711995	5	1.44	0	0	6	1.8	"AJ948079 KN404_1 Sus scrofa cDNA clone C0007744h14 5', mRNA sequence /clone=C0007744h14 /clone_end=5' /gb=AJ948079 /gi=74364895 /ug=Ssc.35036 /len=833"	-	-	-	gi|301755032|ref|XP_002913347.1|/5.68143e-101/PREDICTED: coiled-coil domain-containing protein 21-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55327059	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVR010061G08, expressed in ovary /gb=AK347592 /gi=288576997 /ug=Ssc.36557 /len=2321"	GO:0043231//intracellular membrane-bounded organelle;GO:0000776//kinetochore;GO:0005813//centrosome;GO:0005876//spindle microtubule	GO:0008017//microtubule binding	GO:0007067//mitosis;GO:0006935//chemotaxis;GO:0007019//microtubule depolymerization	gi|301772794|ref|XP_002921817.1|/3.65194e-146/PREDICTED: CLIP-associating protein 1-like isoform 3 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S40022386	1562	449.71	237	67.75	638	191.74	"reje23b_a22.y1 eje Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW117295 /gi=182487473 /ug=Ssc.91159 /len=247"	-	-	-	-
gnl|UG|Ssc#S49953831	0	0	3	0.86	0	0	"Sus scrofa acylglycerol kinase (AGK) mRNA, complete cds /cds=p(58,1323) /gb=FJ436384 /gi=217314882 /ug=Ssc.21889 /len=2621"	GO:0005740//mitochondrial envelope	GO:0001727//lipid kinase activity;GO:0032559	GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0016310//phosphorylation;GO:0006672//ceramide metabolic process	"gi|219521966|ref|NP_001137171.1|/0/acylglycerol kinase, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S49953839	10	2.88	12	3.43	6	1.8	"Sus scrofa low density lipoprotein receptor-related protein 10 (LRP10) mRNA, complete cds /cds=p(172,2307) /gb=FJ458421 /gi=217039102 /ug=Ssc.51922 /len=2847"	GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity;GO:0030169//low-density lipoprotein particle binding	GO:0010876;GO:0006810//transport;GO:0009987//cellular process;GO:0044238//primary metabolic process	gi|219522000|ref|NP_001137187.1|/0/low-density lipoprotein receptor-related protein 10 [Sus scrofa]
gnl|UG|Ssc#S55325467	84	24.18	30	8.58	50	15.03	"Sus scrofa mRNA, clone:PTG010017F06, expressed in pituitary gland /gb=AK349184 /gi=288779359 /ug=Ssc.61743 /len=1765"	GO:0032991//macromolecular complex;GO:0043005//neuron projection;GO:0015630//microtubule cytoskeleton	GO:0032561;GO:0042287//MHC protein binding;GO:0005198//structural molecule activity;GO:0017111//nucleoside-triphosphatase activity	GO:0006458//'de novo' protein folding;GO:0007051//spindle organization;GO:0009207;GO:0006935//chemotaxis;GO:0030154//cell differentiation;GO:0043623//cellular protein complex assembly;GO:0000087//M phase of mitotic cell cycle;GO:0016477//cell migration	gi|50592996|ref|NP_006077.2|/0/tubulin beta-3 chain isoform 1 [Homo sapiens]
gnl|UG|Ssc#S58314231	0	0	3	0.86	6	1.8	"PREDICTED: Sus scrofa syntaxin-binding protein 1-like (LOC100517927), mRNA /cds=p(129,1913) /gb=XM_003122169 /gi=311246474 /ug=Ssc.18697 /len=1939"	GO:0032991//macromolecular complex;GO:0016020//membrane;GO:0030141//stored secretory granule	GO:0019900//kinase binding;GO:0019905//syntaxin binding	"GO:0016082//synaptic vesicle priming;GO:0015980//energy derivation by oxidation of organic compounds;GO:0031647//regulation of protein stability;GO:0034109//homotypic cell-cell adhesion;GO:0032228//regulation of synaptic transmission, GABAergic;GO:0048167//regulation of synaptic plasticity;GO:0016050//vesicle organization;GO:0030073//insulin secretion;GO:0043066//negative regulation of apoptosis"	"gi|148676634|gb|EDL08581.1|/0/syntaxin binding protein 1, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S58312714	6	1.73	6	1.72	17	5.11	"PREDICTED: Sus scrofa FCH domain only protein 2-like (LOC100514094), mRNA /cds=p(16,294) /gb=XM_003123686 /gi=311249643 /ug=Ssc.1746 /len=2677"	-	-	-	gi|301771928|ref|XP_002921389.1|/7.78702e-47/PREDICTED: FCH domain only protein 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55326161	3	0.86	0	0	5	1.5	"Sus scrofa mRNA, clone:OVRM10182B05, expressed in ovary /gb=AK348490 /gi=288778665 /ug=Ssc.11748 /len=1695"	-	-	-	gi|297690391|ref|XP_002822603.1|/4.94676e-70/PREDICTED: pleckstrin homology-like domain family B member 1-like isoform 4 [Pongo abelii]
gnl|UG|Ssc#S46876066	13	3.74	2	0.57	0	0	"PREDICTED: Sus scrofa kinesin family member 16B (KIF16B), mRNA /cds=p(1,4086) /gb=XM_001925870 /gi=311274397 /ug=Ssc.27869 /len=5035"	GO:0015630//microtubule cytoskeleton	GO:0005543//phospholipid binding;GO:0003774//motor activity;GO:0032559	GO:0007017//microtubule-based process	gi|311274398|ref|XP_001925905.2|/0/PREDICTED: kinesin family member 16B [Sus scrofa]
gnl|UG|Ssc#S55323769	6	1.73	2	0.57	7	2.1	"Sus scrofa mRNA, clone:SPL010019B10, expressed in spleen /gb=AK350242 /gi=288781103 /ug=Ssc.83002 /len=2721"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0005624//membrane fraction	GO:0046914//transition metal ion binding;GO:0042802//identical protein binding;GO:0019899//enzyme binding;GO:0019905//syntaxin binding;GO:0019787//small conjugating protein ligase activity	GO:0016574//histone ubiquitination;GO:0019941//modification-dependent protein catabolic process;GO:0006513//protein monoubiquitination	gi|301778801|ref|XP_002924807.1|/0/PREDICTED: e3 ubiquitin-protein ligase BRE1B-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55324154	8	2.3	3	0.86	0	0	"Sus scrofa mRNA, clone:SMG010056D05, expressed in submaxillary gland /gb=AK350054 /gi=288780718 /ug=Ssc.34307 /len=1091"	-	-	-	-
gnl|UG|Ssc#S58311582	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa nephronophthisis 1 (juvenile) (NPHP1), mRNA /cds=p(1,2211) /gb=XM_003124830 /gi=311251973 /ug=Ssc.21735 /len=2425"	GO:0043229//intracellular organelle;GO:0044459//plasma membrane part;GO:0031513//nonmotile primary cilium	GO:0005488//binding	GO:0048869;GO:0048856//anatomical structure development;GO:0003008;GO:0007010//cytoskeleton organization;GO:0023052//signaling;GO:0007155//cell adhesion;GO:0048232//male gamete generation;GO:0003006//developmental process involved in reproduction;GO:0007610//behavior	gi|311251974|ref|XP_003124878.1|/0/PREDICTED: nephrocystin-1-like [Sus scrofa]
gnl|UG|Ssc#S58311956	19	5.47	16	4.57	11	3.31	"PREDICTED: Sus scrofa vitamin K epoxide reductase complex subunit 1-like protein 1-like (LOC100518062), mRNA /cds=p(125,655) /gb=XM_003124445 /gi=311251195 /ug=Ssc.21554 /len=1544"	GO:0031224//intrinsic to membrane	-	GO:0006775	gi|311251196|ref|XP_003124493.1|/1.77339e-95/PREDICTED: vitamin K epoxide reductase complex subunit 1-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S35166174	363	104.51	276	78.89	303	91.06	"Sus scrofa mRNA, clone:THY010202C04, expressed in thymus /gb=AK239751 /gi=115553564 /ug=Ssc.15602 /len=2123"	-	-	-	-
gnl|UG|Ssc#S58314981	14	4.03	27	7.72	12	3.61	"PREDICTED: Sus scrofa uncharacterized protein C18orf25-like, transcript variant 2 (LOC100518165), mRNA /cds=p(73,1287) /gb=XM_003121416 /gi=311244494 /ug=Ssc.58250 /len=1647"	-	-	-	gi|311244495|ref|XP_003121464.1|/0/PREDICTED: uncharacterized protein C18orf25-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35168340	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10140A03, expressed in ovary /gb=AK236028 /gi=115551350 /ug=Ssc.13079 /len=2856"	GO:0031224//intrinsic to membrane;GO:0044432//endoplasmic reticulum part	GO:0046872//metal ion binding;GO:0015924	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0006487//protein N-linked glycosylation	"gi|73967467|ref|XP_537786.2|/0/PREDICTED: similar to Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (ER alpha-1,2-mannosidase) (Mannosidase alpha class 1B member 1) (Man9GlcNAc2-specific processing alpha-mannosidase) [Canis familiaris]"
gnl|UG|Ssc#S58308395	44	12.67	26	7.43	49	14.73	"PREDICTED: Sus scrofa RING finger protein 11-like (LOC100518257), partial mRNA /cds=p(1,651) /gb=XM_003127994 /gi=311259339 /ug=Ssc.4572 /len=2725"	GO:0043234//protein complex;GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0019941//modification-dependent protein catabolic process;GO:0016567//protein ubiquitination	"gi|311259340|ref|XP_003128042.1|/1.08928e-112/PREDICTED: RING finger protein 11-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58301606	39	11.23	35	10	43	12.92	"PREDICTED: Sus scrofa septin-7-like, transcript variant 1 (LOC100523875), mRNA /cds=p(182,1495) /gb=XM_003134790 /gi=311275635 /ug=Ssc.94264 /len=2525"	GO:0015630//microtubule cytoskeleton;GO:0032155;GO:0044459//plasma membrane part;GO:0033267//axon part;GO:0005624//membrane fraction;GO:0032156;GO:0000776//kinetochore;GO:0044444//cytoplasmic part;GO:0032432//actin filament bundle;GO:0005930//axoneme	GO:0032561	GO:0048858//cell projection morphogenesis;GO:0008360//regulation of cell shape;GO:0051259//protein oligomerization;GO:0000087//M phase of mitotic cell cycle	gi|148352331|ref|NP_001779.3|/0/septin-7 isoform 1 [Homo sapiens]
gnl|UG|Ssc#S58312562	0	0	0	0	0	0	"PREDICTED: Sus scrofa adenomatous polyposis coli (APC), partial mRNA /cds=p(1,5802) /gb=XM_003123839 /gi=311249956 /ug=Ssc.52711 /len=5802"	"GO:0043296//apical junction complex;GO:0030426//growth cone;GO:0030424//axon;GO:0043231//intracellular membrane-bounded organelle;GO:0005815//microtubule organizing center;GO:0005874//microtubule;GO:0000775//chromosome, centromeric region;GO:0001726//ruffle;GO:0044297//cell body"	GO:0019900//kinase binding;GO:0050839//cell adhesion molecule binding;GO:0019207//kinase regulator activity;GO:0008017//microtubule binding	GO:0019725//cellular homeostasis;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0006915//apoptosis;GO:0030278//regulation of ossification;GO:0002761//regulation of myeloid leukocyte differentiation;GO:0050680//negative regulation of epithelial cell proliferation;GO:0032880//regulation of protein localization;GO:0016477//cell migration;GO:0042476//odontogenesis;GO:0030217//T cell differentiation;GO:0008544//epidermis development;GO:0033205//cell cycle cytokinesis;GO:0031269//pseudopodium assembly;GO:0009896;GO:0030155//regulation of cell adhesion;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0031112;GO:0042221//response to chemical stimulus;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0010741;GO:0033554//cellular response to stress;GO:0007043//cell-cell junction assembly;GO:0030855//epithelial cell differentiation;GO:0003002//regionalization;GO:0065003;GO:0000079//regulation of cyclin-dependent protein kinase activity;GO:0019827//stem cell maintenance;GO:0007019//microtubule depolymerization	"gi|311249957|ref|XP_003123887.1|/0/PREDICTED: adenomatous polyposis coli protein-like, partial [Sus scrofa]"
gnl|UG|Ssc#S46875870	12	3.45	4	1.14	8	2.4	"PREDICTED: Sus scrofa ubiquitin-conjugating enzyme E2C, transcript variant 1 (UBE2C), mRNA /cds=p(84,623) /gb=XM_001928833 /gi=311274967 /ug=Ssc.27540 /len=837"	GO:0031981//nuclear lumen;GO:0000152//nuclear ubiquitin ligase complex;GO:0044444//cytoplasmic part	GO:0032559;GO:0019787//small conjugating protein ligase activity	GO:0000209//protein polyubiquitination;GO:0000226//microtubule cytoskeleton organization;GO:0043161//proteasomal ubiquitin-dependent protein catabolic process;GO:0048017//inositol lipid-mediated signaling;GO:0045841//negative regulation of mitotic metaphase/anaphase transition;GO:0007050//cell cycle arrest;GO:0007096//regulation of exit from mitosis;GO:0051439//regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle;GO:0051443//positive regulation of ubiquitin-protein ligase activity;GO:0010993//regulation of ubiquitin homeostasis	gi|311274968|ref|XP_001928868.2|/7.74782e-90/PREDICTED: ubiquitin-conjugating enzyme E2 C isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58305891	17	4.89	0	0	12	3.61	"PREDICTED: Sus scrofa isoleucyl-tRNA synthetase 2, mitochondrial (IARS2), mRNA /cds=p(112,3150) /gb=XM_003130505 /gi=311265233 /ug=Ssc.7164 /len=3711"	GO:0044429//mitochondrial part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|311265234|ref|XP_003130553.1|/0/PREDICTED: isoleucyl-tRNA synthetase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58308640	699	201.25	995	284.42	487	146.36	"PREDICTED: Sus scrofa protein tyrosine phosphatase type IVA 2-like (LOC100518313), mRNA /cds=p(1,411) /gb=XM_003127754 /gi=311258835 /ug=Ssc.31706 /len=2858"	GO:0005768//endosome;GO:0016020//membrane	GO:0004725//protein tyrosine phosphatase activity;GO:0005488//binding	GO:0006470//protein dephosphorylation	gi|311258836|ref|XP_003127802.1|/4.57075e-77/PREDICTED: protein tyrosine phosphatase type IVA 2-like [Sus scrofa]
gnl|UG|Ssc#S31127092	8	2.3	7	2	10	3.01	"1555587 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DY430930 /gi=87232233 /ug=Ssc.42907 /len=581"	GO:0043227//membrane-bounded organelle;GO:0043229//intracellular organelle	GO:0005488//binding	-	gi|158706093|sp|A6QLY7.1|PBIP1_BOVIN/1.57717e-48/RecName: Full=Pre-B-cell leukemia transcription factor-interacting protein 1; AltName: Full=Hematopoietic PBX-interacting protein
gnl|UG|Ssc#S58304307	11	3.17	7	2	6	1.8	"PREDICTED: Sus scrofa CKLF-like MARVEL transmembrane domain-containing protein 6-like (LOC100511532), mRNA /cds=p(71,622) /gb=XM_003132091 /gi=311268628 /ug=Ssc.8761 /len=3213"	GO:0016020//membrane	-	-	gi|311268629|ref|XP_003132139.1|/1.32137e-88/PREDICTED: CKLF-like MARVEL transmembrane domain-containing protein 6-like [Sus scrofa]
gnl|UG|Ssc#S58312949	47	13.53	9	2.57	38	11.42	"PREDICTED: Sus scrofa A kinase (PRKA) anchor protein 8 (AKAP8), mRNA /cds=p(1,2073) /gb=XM_003123431 /gi=311249164 /ug=Ssc.7750 /len=2336"	GO:0045120//pronucleus;GO:0034399//nuclear periphery;GO:0005694//chromosome	GO:0051018//protein kinase A binding;GO:0046914//transition metal ion binding;GO:0043566//structure-specific DNA binding	GO:0023052//signaling;GO:0007067//mitosis	gi|311249165|ref|XP_003123479.1|/0/PREDICTED: a-kinase anchor protein 8-like [Sus scrofa]
gnl|UG|Ssc#S58307277	22	6.33	41	11.72	19	5.71	"PREDICTED: Sus scrofa CCR4-NOT transcription complex, subunit 6-like (CNOT6L), mRNA /cds=p(1,1659) /gb=XM_003129121 /gi=311262407 /ug=Ssc.7911 /len=4112"	GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0004518//nuclease activity	"GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay;GO:0006396//RNA processing"	gi|311262408|ref|XP_003129169.1|/0/PREDICTED: CCR4-NOT transcription complex subunit 6-like [Sus scrofa]
gnl|UG|Ssc#S35167941	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10163D04, expressed in ovary /gb=AK236204 /gi=115551798 /ug=Ssc.70889 /len=1346"	-	-	-	gi|30046988|gb|AAH50566.1|/2.4823e-143/BPTF protein [Homo sapiens]
gnl|UG|Ssc#S58311612	104	29.94	102	29.16	72	21.64	"PREDICTED: Sus scrofa constitutive coactivator of PPAR-gamma-like protein 1-like (LOC100514399), mRNA /cds=p(1,2817) /gb=XM_003124793 /gi=311251910 /ug=Ssc.911 /len=4431"	GO:0044424//intracellular part;GO:0016020//membrane	GO:0003676//nucleic acid binding	-	gi|311251911|ref|XP_003124841.1|/0/PREDICTED: constitutive coactivator of PPAR-gamma-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S23691718	7	2.02	14	4	13	3.91	"1097791 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN102817 /gi=59775593 /ug=Ssc.16984 /len=866"	-	-	-	-
gnl|UG|Ssc#S58301444	9	2.59	6	1.72	12	3.61	"PREDICTED: Sus scrofa hypothetical protein LOC100517795 (LOC100517795), mRNA /cds=p(1,1212) /gb=XM_003134953 /gi=311275984 /ug=Ssc.41375 /len=2713"	GO:0005764//lysosome;GO:0030117//membrane coat;GO:0012506//vesicle membrane	GO:0022892	GO:0048193//Golgi vesicle transport;GO:0050688//regulation of defense response to virus;GO:0015031//protein transport	gi|311275985|ref|XP_003135001.1|/0/PREDICTED: hypothetical protein LOC100517795 [Sus scrofa]
gnl|UG|Ssc#S46876086	16	4.61	0	0	18	5.41	"PREDICTED: Sus scrofa minichromosome maintenance complex component 8 (MCM8), partial mRNA /cds=p(1,2643) /gb=XM_001927494 /gi=311274337 /ug=Ssc.22214 /len=2838"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0016462//pyrophosphatase activity;GO:0032559	"GO:0007050//cell cycle arrest;GO:0006261//DNA-dependent DNA replication;GO:0051320;GO:0006351//transcription, DNA-dependent"	"gi|311274338|ref|XP_001927529.2|/0/PREDICTED: DNA replication licensing factor MCM8, partial [Sus scrofa]"
gnl|UG|Ssc#S55324381	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:ADR010075G01, expressed in adrenal gland /gb=AK343477 /gi=288780491 /ug=Ssc.5813 /len=3918"	-	-	-	gi|73968841|ref|XP_538313.2|/0/PREDICTED: similar to CG3309-PA [Canis familiaris]
gnl|UG|Ssc#S58302905	4	1.15	0	0	4	1.2	"PREDICTED: Sus scrofa activating transcription factor 2 (ATF2), mRNA /cds=p(250,1767) /gb=XM_003133491 /gi=311272669 /ug=Ssc.84756 /len=2506"	GO:0031981//nuclear lumen;GO:0005626//insoluble fraction	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0000982;GO:0003712//transcription cofactor activity;GO:0046983//protein dimerization activity;GO:0043566//structure-specific DNA binding	GO:0003007//heart morphogenesis;GO:0007166//cell surface receptor linked signaling pathway;GO:0009888//tissue development;GO:0032906;GO:0002224//toll-like receptor signaling pathway;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0030154//cell differentiation;GO:0000165//MAPKKK cascade	gi|311272670|ref|XP_003133539.1|/0/PREDICTED: cyclic AMP-dependent transcription factor ATF-2-like [Sus scrofa]
gnl|UG|Ssc#S35167380	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LVRM10022C01, expressed in liver /gb=AK232764 /gi=115552359 /ug=Ssc.26267 /len=1830"	-	-	-	-
gnl|UG|Ssc#S46880996	28	8.06	44	12.58	13	3.91	"PREDICTED: Sus scrofa protein FAM166B-like (LOC100156839), mRNA /cds=p(54,896) /gb=XM_001927889 /gi=311245978 /ug=Ssc.28528 /len=1069"	-	-	-	gi|311245979|ref|XP_001927924.2|/4.26828e-145/PREDICTED: protein FAM166B-like [Sus scrofa]
gnl|UG|Ssc#S46877560	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa neuroserpin (LOC100154352), mRNA /cds=p(143,1375) /gb=XM_001926040 /gi=311269620 /ug=Ssc.6948 /len=1628"	-	GO:0004866//endopeptidase inhibitor activity	GO:0010466//negative regulation of peptidase activity;GO:0007155//cell adhesion;GO:0007399//nervous system development;GO:0006508//proteolysis	gi|311269621|ref|XP_001926075.2|/0/PREDICTED: neuroserpin [Sus scrofa]
gnl|UG|Ssc#S23213347	349	100.48	827	236.4	162	48.69	"Sus scrofa clone Clu_24086.scr.msk.p1.Contig4, mRNA sequence /gb=AY609661 /gi=52351229 /ug=Ssc.1863 /len=1608"	GO:0000323//lytic vacuole;GO:0005768//endosome;GO:0031090//organelle membrane;GO:0012505//endomembrane system	GO:0017111//nucleoside-triphosphatase activity;GO:0032561	GO:0006810//transport;GO:0035556//intracellular signal transduction;GO:0001894//tissue homeostasis;GO:0009207	gi|311275944|ref|XP_003134983.1|/1.29298e-104/PREDICTED: ras-related protein Rab-9A-like [Sus scrofa]
gnl|UG|Ssc#S35164379	13	3.74	7	2	12	3.61	"Sus scrofa mRNA, clone:MLN010080F06, expressed in mesenteric lymph node /gb=AK233960 /gi=115555347 /ug=Ssc.45434 /len=1616"	GO:0043226//organelle;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0006915//apoptosis	gi|311256133|ref|XP_003126516.1|/0/PREDICTED: apoptosis facilitator Bcl-2-like protein 14-like [Sus scrofa]
gnl|UG|Ssc#S58309815	9	2.59	6	1.72	9	2.7	"PREDICTED: Sus scrofa WNK lysine deficient protein kinase 1 (WNK1), mRNA /cds=p(1,7761) /gb=XM_003126590 /gi=311256392 /ug=Ssc.9949 /len=10588"	GO:0044424//intracellular part	GO:0004672//protein kinase activity;GO:0032559	GO:0006810//transport;GO:0035556//intracellular signal transduction;GO:0048468//cell development;GO:0006464//protein modification process	gi|311256393|ref|XP_003126638.1|/0/PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase WNK1 [Sus scrofa]
gnl|UG|Ssc#S46876249	2	0.58	4	1.14	7	2.1	"PREDICTED: Sus scrofa Ppig protein (LOC100155786), mRNA /cds=p(114,2375) /gb=XM_001926861 /gi=311272601 /ug=Ssc.16456 /len=3244"	-	-	-	-
gnl|UG|Ssc#S58302433	15	4.32	0	0	5	1.5	"PREDICTED: Sus scrofa ATP-dependent RNA helicase DHX29-like (LOC100514880), mRNA /cds=p(150,4250) /gb=XM_003133948 /gi=311273734 /ug=Ssc.14229 /len=4575"	GO:0043231//intracellular membrane-bounded organelle	"GO:0042623//ATPase activity, coupled;GO:0008135//translation factor activity, nucleic acid binding;GO:0032559"	GO:0006412//translation;GO:0009207	gi|311273735|ref|XP_003133996.1|/0/PREDICTED: ATP-dependent RNA helicase DHX29-like [Sus scrofa]
gnl|UG|Ssc#S23696311	0	0	4	1.14	0	0	"1104861 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN107414 /gi=59782677 /ug=Ssc.60225 /len=842"	GO:0016021//integral to membrane	GO:0022890//inorganic cation transmembrane transporter activity	GO:0006825//copper ion transport	gi|310752155|gb|ADP09413.1|/2.63774e-53/CTR1 [Cricetulus griseus]
gnl|UG|Ssc#S35173530	8	2.3	4	1.14	7	2.1	"Sus scrofa mRNA, clone:UTR010093G09, expressed in uterus /gb=AK240543 /gi=115546305 /ug=Ssc.29409 /len=1623"	-	-	-	gi|77735477|ref|NP_001029433.1|/8.48535e-104/ubiquitin domain-containing protein 1 [Bos taurus]
gnl|UG|Ssc#S35167321	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10191C12, expressed in ovary /gb=AK236423 /gi=115552418 /ug=Ssc.1405 /len=1674"	GO:0030176//integral to endoplasmic reticulum membrane	GO:0035091//phosphatidylinositol binding;GO:0016787//hydrolase activity	GO:0010627//regulation of intracellular protein kinase cascade;GO:0006497//protein lipidation	gi|297591955|ref|NP_001172065.1|/0/phosphatidylinositol glycan anchor biosynthesis class U protein [Sus scrofa]
gnl|UG|Ssc#S58308467	9	2.59	0	0	2	0.6	"PREDICTED: Sus scrofa wntless homolog (Drosophila), transcript variant 1 (WLS), mRNA /cds=p(252,1877) /gb=XM_003127932 /gi=311259190 /ug=Ssc.17560 /len=2835"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0012506//vesicle membrane	GO:0060089;GO:0005515//protein binding	GO:0030177//positive regulation of Wnt receptor signaling pathway;GO:0009798//axis specification;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0001704//formation of primary germ layer	gi|311259191|ref|XP_003127980.1|/0/PREDICTED: protein wntless homolog isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58310019	8	2.3	3	0.86	21	6.31	"PREDICTED: Sus scrofa zinc finger C3H1 domain-containing protein-like (LOC100521898), mRNA /cds=p(347,6184) /gb=XM_003126382 /gi=311255933 /ug=Ssc.33497 /len=6262"	GO:0044464//cell part	GO:0005488//binding	GO:0010467//gene expression	gi|311255934|ref|XP_003126430.1|/0/PREDICTED: LOW QUALITY PROTEIN: zinc finger C3H1 domain-containing protein-like [Sus scrofa]
gnl|UG|Ssc#S35168699	5	1.44	0	0	5	1.5	"Sus scrofa mRNA, clone:THY010037E05, expressed in thymus /gb=AK238852 /gi=115550991 /ug=Ssc.56741 /len=1487"	GO:0032991//macromolecular complex;GO:0043231//intracellular membrane-bounded organelle	GO:0003700//sequence-specific DNA binding transcription factor activity;GO:0030528//transcription regulator activity;GO:0008134//transcription factor binding;GO:0010843//promoter binding;GO:0019904//protein domain specific binding;GO:0046983//protein dimerization activity;GO:0019899//enzyme binding	"GO:0021700//developmental maturation;GO:0045168//cell-cell signaling involved in cell fate commitment;GO:0048870//cell motility;GO:0000904//cell morphogenesis involved in differentiation;GO:0021545//cranial nerve development;GO:0030509//BMP signaling pathway;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0048634;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0061308;GO:0021983//pituitary gland development;GO:0003310//pancreatic A cell differentiation;GO:0009912//auditory receptor cell fate commitment;GO:0001756//somitogenesis;GO:0045607;GO:0040034//regulation of development, heterochronic;GO:0030323//respiratory tube development;GO:0042098//T cell proliferation;GO:0003264//regulation of cardioblast proliferation;GO:0019827//stem cell maintenance;GO:0030917//midbrain-hindbrain boundary development"	gi|77736301|ref|NP_001029850.1|/1.33437e-116/transcription factor HES-1 [Bos taurus]
gnl|UG|Ssc#S35165479	2	0.58	0	0	2	0.6	"Sus scrofa mRNA, clone:UTR010024D10, expressed in uterus /gb=AK240042 /gi=115554247 /ug=Ssc.19724 /len=1139"	-	"GO:0005488//binding;GO:0004114//3',5'-cyclic-nucleotide phosphodiesterase activity;GO:0004857//enzyme inhibitor activity"	GO:0019222//regulation of metabolic process;GO:0050953//sensory perception of light stimulus;GO:0006184//GTP catabolic process;GO:0007165//signal transduction	"gi|27806061|ref|NP_776845.1|/1.38922e-80/retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta [Bos taurus]"
gnl|UG|Ssc#S58305019	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa ets variant 4 (ETV4), mRNA /cds=p(106,1692) /gb=XM_003131377 /gi=311267144 /ug=Ssc.20591 /len=2361"	GO:0031981//nuclear lumen	GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	"GO:0007411//axon guidance;GO:0060688//regulation of morphogenesis of a branching structure;GO:0033598//mammary gland epithelial cell proliferation;GO:0006351//transcription, DNA-dependent"	gi|311267145|ref|XP_003131425.1|/0/PREDICTED: ETS translocation variant 4-like [Sus scrofa]
gnl|UG|Ssc#S58301377	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa BCL-6 corepressor-like (LOC100510994), mRNA /cds=p(78,1001) /gb=XM_003135013 /gi=311276141 /ug=Ssc.8242 /len=1875"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0043565//sequence-specific DNA binding;GO:0019787//small conjugating protein ligase activity;GO:0019899//enzyme binding	GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0030279//negative regulation of ossification;GO:0007389//pattern specification process;GO:0070168;GO:0009887//organ morphogenesis;GO:0032446//protein modification by small protein conjugation;GO:0000414;GO:0031061//negative regulation of histone methylation	gi|311276142|ref|XP_003135061.1|/1.13411e-171/PREDICTED: BCL-6 corepressor-like [Sus scrofa]
gnl|UG|Ssc#S58303825	4	1.15	2	0.57	3	0.9	"PREDICTED: Sus scrofa sentrin-specific protease 2-like (LOC100515969), mRNA /cds=p(1,1710) /gb=XM_003132572 /gi=311269741 /ug=Ssc.25246 /len=2980"	GO:0016604//nuclear body;GO:0005635//nuclear envelope;GO:0031410//cytoplasmic vesicle	GO:0005515//protein binding;GO:0019783//small conjugating protein-specific protease activity	"GO:0006351//transcription, DNA-dependent;GO:0050658//RNA transport;GO:0016055//Wnt receptor signaling pathway;GO:0043393//regulation of protein binding;GO:0001932//regulation of protein phosphorylation;GO:0009798//axis specification;GO:0070646"	gi|311269742|ref|XP_003132620.1|/0/PREDICTED: sentrin-specific protease 2-like [Sus scrofa]
gnl|UG|Ssc#S20945852	63	18.14	23	6.57	66	19.83	"AJ657575 KN277 Sus scrofa cDNA clone C0005195_H12, mRNA sequence /clone=C0005195_H12 /gb=AJ657575 /gi=49341644 /ug=Ssc.85807 /len=611"	-	-	-	-
gnl|UG|Ssc#S58313233	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa cortexin-1-like (LOC100520948), mRNA /cds=p(115,363) /gb=XM_003123199 /gi=311248587 /ug=Ssc.62058 /len=789"	-	-	-	gi|119589362|gb|EAW68956.1|/4.89819e-19/cortexin 1 [Homo sapiens]
gnl|UG|Ssc#S58304607	2	0.58	4	1.14	4	1.2	"PREDICTED: Sus scrofa ARF GTPase-activating protein GIT1-like (LOC100520151), mRNA /cds=p(1,2328) /gb=XM_003131796 /gi=311267996 /ug=Ssc.79339 /len=3511"	-	-	-	-
gnl|UG|Ssc#S46880764	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa leucine-rich repeat-containing protein 28-like (LOC100156704), mRNA /cds=p(122,1225) /gb=XM_001925096 /gi=311245092 /ug=Ssc.6665 /len=3385"	-	-	-	gi|311245093|ref|XP_001925131.2|/0/PREDICTED: leucine-rich repeat-containing protein 28-like [Sus scrofa]
gnl|UG|Ssc#S58311960	19	5.47	2	0.57	21	6.31	"PREDICTED: Sus scrofa protein-tyrosine sulfotransferase 1-like (LOC100517581), mRNA /cds=p(356,1204) /gb=XM_003124442 /gi=311251187 /ug=Ssc.84274 /len=1204"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0008146//sulfotransferase activity	GO:0006952//defense response;GO:0006477//protein sulfation	gi|311251188|ref|XP_003124490.1|/1.0234e-161/PREDICTED: protein-tyrosine sulfotransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S58306554	5	1.44	2	0.57	4	1.2	"PREDICTED: Sus scrofa UPF0686 protein C11orf1 homolog (LOC100518503), mRNA /cds=p(594,1103) /gb=XM_003129859 /gi=311263880 /ug=Ssc.94024 /len=1230"	GO:0043231//intracellular membrane-bounded organelle	-	-	gi|311263881|ref|XP_003129907.1|/2.36833e-105/PREDICTED: UPF0686 protein C11orf1 homolog [Sus scrofa]
gnl|UG|Ssc#S58304668	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa myosin (LOC100049650), partial mRNA /cds=p(1,2717) /gb=XM_003131740 /gi=311267867 /ug=Ssc.26431 /len=2717"	GO:0032589//neuron projection membrane;GO:0005783//endoplasmic reticulum;GO:0015629//actin cytoskeleton	"GO:0008092//cytoskeletal protein binding;GO:0003774//motor activity;GO:0042623//ATPase activity, coupled;GO:0032559"	-	"gi|311267868|ref|XP_003131788.1|/0/PREDICTED: myosin-Id, partial [Sus scrofa]"
gnl|UG|Ssc#S58303511	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa protein phosphatase PTC7 homolog (LOC100513685), mRNA /cds=p(275,1198) /gb=XM_003132884 /gi=311270628 /ug=Ssc.24027 /len=2097"	GO:0043231//intracellular membrane-bounded organelle	GO:0016791//phosphatase activity;GO:0043169//cation binding	GO:0006796//phosphate metabolic process	gi|311270629|ref|XP_003132932.1|/1.03146e-160/PREDICTED: LOW QUALITY PROTEIN: protein phosphatase PTC7 homolog [Sus scrofa]
gnl|UG|Ssc#S58302294	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa RING finger protein 145-like (LOC100520283), mRNA /cds=p(1,2253) /gb=XM_003134102 /gi=311274018 /ug=Ssc.87286 /len=2253"	GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding	-	gi|311274019|ref|XP_003134150.1|/0/PREDICTED: RING finger protein 145-like [Sus scrofa]
gnl|UG|Ssc#S20937582	2	0.58	0	0	14	4.21	"AJ649305 CSEQRAN19 Sus scrofa cDNA clone C0003272_B22, mRNA sequence /clone=C0003272_B22 /gb=AJ649305 /gi=49326150 /ug=Ssc.74135 /len=528"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding	GO:0032501//multicellular organismal process;GO:0042692//muscle cell differentiation	"gi|148689771|gb|EDL21718.1|/6.81214e-79/cysteine and glycine-rich protein 2, isoform CRA_b [Mus musculus]"
gnl|UG|Ssc#S20937228	9	2.59	5	1.43	0	0	"AJ648951 CSEQRAN19 Sus scrofa cDNA clone C0003271_B17, mRNA sequence /clone=C0003271_B17 /gb=AJ648951 /gi=49325796 /ug=Ssc.74023 /len=556"	GO:0042579//microbody;GO:0031981//nuclear lumen	GO:0016408;GO:0005496//steroid binding	GO:0010876;GO:0051234//establishment of localization;GO:0006629//lipid metabolic process;GO:0006732//coenzyme metabolic process;GO:0006996//organelle organization	"gi|149035732|gb|EDL90413.1|/8.63639e-54/rCG50466, isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S40102974	0	0	2	0.57	2	0.6	"rpfco0107_l4.y1 fco Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW197881 /gi=182586815 /ug=Ssc.95439 /len=577"	-	-	-	-
gnl|UG|Ssc#S46876851	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa ret proto-oncogene (RET), mRNA /cds=p(1,3099) /gb=XM_001926369 /gi=311271214 /ug=Ssc.61286 /len=3430"	GO:0005626//insoluble fraction;GO:0031224//intrinsic to membrane	GO:0004871//signal transducer activity;GO:0004713//protein tyrosine kinase activity;GO:0046872//metal ion binding;GO:0032559	GO:0042221//response to chemical stimulus;GO:0007243//intracellular protein kinase cascade;GO:0014041;GO:0001667//ameboidal cell migration;GO:0016337//cell-cell adhesion;GO:0007494//midgut development;GO:0007167//enzyme linked receptor protein signaling pathway;GO:0006464//protein modification process;GO:0035295//tube development;GO:0016331//morphogenesis of embryonic epithelium	gi|311271215|ref|XP_001926404.2|/0/PREDICTED: proto-oncogene tyrosine-protein kinase receptor Ret [Sus scrofa]
gnl|UG|Ssc#S20935435	2	0.58	4	1.14	6	1.8	"AJ647158 CSEQRAN19 Sus scrofa cDNA clone C0003104_O07, mRNA sequence /clone=C0003104_O07 /gb=AJ647158 /gi=49324003 /ug=Ssc.74017 /len=471"	GO:0044439;GO:0031224//intrinsic to membrane	GO:0003824//catalytic activity	GO:0008152//metabolic process	gi|129593955|gb|ABO31120.1|/9.40327e-72/SDR family dehydrogenase/reductase member 7B variant [Rattus norvegicus]
gnl|UG|Ssc#S18548934	0	0	6	1.72	2	0.6	"BX917585 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0035.b.22 5prim, mRNA sequence /clone=scan0035.b.22 /clone_end=5' /gb=BX917585 /gi=90242457 /ug=Ssc.7022 /len=885"	-	-	-	gi|301759975|ref|XP_002915791.1|/2.10273e-88/PREDICTED: leucine-rich repeat-containing protein 42-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55243503	9	2.59	14	4	6	1.8	"FS667654 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10049D09 5', mRNA sequence /clone=HTMT10049D09 /clone_end=5' /gb=FS667654 /gi=288232732 /ug=Ssc.26780 /len=852"	-	-	GO:0006915//apoptosis	gi|311257959|ref|XP_003127393.1|/1.14416e-88/PREDICTED: bcl-2-like protein 12-like [Sus scrofa]
gnl|UG|Ssc#S50699638	20	5.76	5	1.43	17	5.11	"Sus scrofa HLA-B-associated protein 1 (BAT1) mRNA, complete cds /cds=p(652,1938) /gb=EU282340 /gi=162138206 /ug=Ssc.11719 /len=2160"	GO:0030532//small nuclear ribonucleoprotein complex;GO:0016604//nuclear body;GO:0043234//protein complex	"GO:0003724//RNA helicase activity;GO:0005515//protein binding;GO:0017069//snRNA binding;GO:0032559;GO:0042623//ATPase activity, coupled"	"GO:0006406//mRNA export from nucleus;GO:0009207;GO:0000398//nuclear mRNA splicing, via spliceosome"	gi|4758112|ref|NP_004631.1|/0/spliceosome RNA helicase BAT1 [Homo sapiens]
gnl|UG|Ssc#S58313107	4	1.15	0	0	4	1.2	"PREDICTED: Sus scrofa zinc finger protein 160-like (LOC100513845), mRNA /cds=p(1,1368) /gb=XM_003123296 /gi=311248842 /ug=Ssc.41468 /len=1650"	-	-	-	gi|311248843|ref|XP_003123344.1|/0/PREDICTED: zinc finger protein 160-like [Sus scrofa]
gnl|UG|Ssc#S23763684	0	0	0	0	2	0.6	"1121395 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN121303 /gi=59815582 /ug=Ssc.45245 /len=818"	GO:0032991//macromolecular complex;GO:0031981//nuclear lumen;GO:0005737//cytoplasm	GO:0005515//protein binding	GO:0006810//transport;GO:0006396//RNA processing;GO:0016071//mRNA metabolic process;GO:0006403//RNA localization	gi|148227366|ref|NP_001091538.1|/3.43203e-111/protein CASC3 [Bos taurus]
gnl|UG|Ssc#S58313440	0	0	0	0	0	0	"PREDICTED: Sus scrofa inscuteable homolog (Drosophila) (INSC), mRNA /cds=p(1,1566) /gb=XM_003122961 /gi=311248168 /ug=Ssc.95606 /len=1566"	GO:0044424//intracellular part	-	GO:0048731;GO:0048869	gi|311248169|ref|XP_003123009.1|/0/PREDICTED: protein inscuteable homolog [Sus scrofa]
gnl|UG|Ssc#S18545870	348	100.19	670	191.52	299	89.86	"BX914521 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0001.d.06 5prim, mRNA sequence /clone=scan0001.d.06 /clone_end=5' /gb=BX914521 /gi=90237096 /ug=Ssc.57326 /len=709"	GO:0070461//SAGA-type complex;GO:0005667//transcription factor complex;GO:0044444//cytoplasmic part	GO:0003712//transcription cofactor activity;GO:0004468//lysine N-acetyltransferase activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0003676//nucleic acid binding;GO:0003702//RNA polymerase II transcription factor activity;GO:0035258//steroid hormone receptor binding;GO:0019899//enzyme binding	"GO:0012501//programmed cell death;GO:0006352//transcription initiation, DNA-dependent;GO:0048513//organ development;GO:0051259//protein oligomerization;GO:0006354//transcription elongation, DNA-dependent;GO:0022402//cell cycle process;GO:0030154//cell differentiation;GO:0051098//regulation of binding;GO:0016573//histone acetylation"	gi|301779209|ref|XP_002925040.1|/1.524e-58/PREDICTED: transcription initiation factor TFIID subunit 10-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S18384455	7	2.02	11	3.14	6	1.8	"935627 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK464608 /gi=40835889 /ug=Ssc.8310 /len=864"	-	-	-	gi|308235972|ref|NP_001184114.1|/2.34815e-20/lysine-specific demethylase 6A isoform 1 [Canis lupus familiaris]
gnl|UG|Ssc#S58303227	61	17.56	122	34.87	35	10.52	"PREDICTED: Sus scrofa peroxisome proliferator-activated receptor gamma, coactivator-related 1 (PPRC1), mRNA /cds=p(1,4989) /gb=XM_003133169 /gi=311271757 /ug=Ssc.49289 /len=5286"	-	-	-	gi|311271758|ref|XP_003133217.1|/0/PREDICTED: peroxisome proliferator-activated receptor gamma coactivator-related protein 1 [Sus scrofa]
gnl|UG|Ssc#S39941545	40	11.52	50	14.29	22	6.61	"rcte08_l18.y1 cte Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW036610 /gi=181269256 /ug=Ssc.8334 /len=553"	-	-	-	-
gnl|UG|Ssc#S39844660	2	0.58	0	0	0	0	"rcje13_l1.y1 cje Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV939742 /gi=178486744 /ug=Ssc.65338 /len=488"	-	-	-	-
gnl|UG|Ssc#S26730493	16	4.61	6	1.72	16	4.81	"AJ941401 CSEQRAN17 Sus scrofa cDNA clone C0007315f23 3', mRNA sequence /clone=C0007315f23 /clone_end=3' /gb=AJ941401 /gi=74358217 /ug=Ssc.81468 /len=812"	-	-	-	-
gnl|UG|Ssc#S58305621	2	0.58	0	0	3	0.9	"PREDICTED: Sus scrofa phosphatidylinositol-5-phosphate 4-kinase type-2 alpha-like (LOC100520446), mRNA /cds=p(33,1253) /gb=XM_003130778 /gi=311265791 /ug=Ssc.2108 /len=3349"	-	GO:0016307//phosphatidylinositol phosphate kinase activity;GO:0032559	GO:0046488//phosphatidylinositol metabolic process;GO:0006796//phosphate metabolic process	gi|311265792|ref|XP_003130826.1|/0/PREDICTED: phosphatidylinositol-5-phosphate 4-kinase type-2 alpha-like [Sus scrofa]
gnl|UG|Ssc#S35170527	32	9.21	4	1.14	27	8.11	"Sus scrofa mRNA, clone:OVRM10060C09, expressed in ovary /gb=AK235233 /gi=115549312 /ug=Ssc.4764 /len=1547"	GO:0043231//intracellular membrane-bounded organelle	"GO:0016620//oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;GO:0046914//transition metal ion binding;GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0042802//identical protein binding;GO:0008289//lipid binding"	GO:0044282;GO:0008217//regulation of blood pressure;GO:0006067//ethanol metabolic process;GO:0016101//diterpenoid metabolic process;GO:0002237//response to molecule of bacterial origin;GO:0017014//protein nitrosylation;GO:0006950//response to stress	gi|311262797|ref|XP_003129360.1|/0/PREDICTED: alcohol dehydrogenase class-3-like [Sus scrofa]
gnl|UG|Ssc#S46877436	18	5.18	32	9.15	6	1.8	"PREDICTED: Sus scrofa bone morphogenetic protein 1 (BMP1), mRNA /cds=p(1,2982) /gb=XM_001927773 /gi=311270314 /ug=Ssc.54377 /len=3566"	GO:0044421//extracellular region part;GO:0031982//vesicle	GO:0004175//endopeptidase activity;GO:0046914//transition metal ion binding;GO:0005102//receptor binding	GO:0044260;GO:0048731;GO:0019538//protein metabolic process;GO:0016337//cell-cell adhesion;GO:0009888//tissue development;GO:0051094//positive regulation of developmental process;GO:0048869	gi|194041441|ref|XP_001927808.1|/0/PREDICTED: bone morphogenetic protein 1 [Sus scrofa]
gnl|UG|Ssc#S58312766	15	4.32	8	2.29	0	0	"PREDICTED: Sus scrofa CCR4-NOT transcription complex, subunit 6 (CNOT6), mRNA /cds=p(223,1881) /gb=XM_003123627 /gi=311249534 /ug=Ssc.87263 /len=1881"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0003676//nucleic acid binding;GO:0004518//nuclease activity	"GO:0006351//transcription, DNA-dependent;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|311249535|ref|XP_003123675.1|/0/PREDICTED: CCR4-NOT transcription complex subunit 6-like [Sus scrofa]
gnl|UG|Ssc#S58315001	12	3.45	5	1.43	11	3.31	"PREDICTED: Sus scrofa sentrin-specific protease 6-like (LOC100155462), mRNA /cds=p(1,4563) /gb=XM_003121403 /gi=311244448 /ug=Ssc.39792 /len=5261"	GO:0031981//nuclear lumen	GO:0070011	GO:0019538//protein metabolic process	gi|311244449|ref|XP_003121451.1|/0/PREDICTED: sentrin-specific protease 6-like [Sus scrofa]
gnl|UG|Ssc#S58301486	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa zinc finger protein 777 (ZNF777), mRNA /cds=p(1,2472) /gb=XM_003134910 /gi=311275881 /ug=Ssc.38228 /len=2665"	GO:0005622//intracellular	GO:0046872//metal ion binding;GO:0003676//nucleic acid binding	-	gi|311275882|ref|XP_003134958.1|/0/PREDICTED: zinc finger protein 777-like [Sus scrofa]
gnl|UG|Ssc#S58313947	67	19.29	48	13.72	78	23.44	"PREDICTED: Sus scrofa cyclin-dependent kinase 2-associated protein 2-like (LOC100526092), mRNA /cds=p(915,1298) /gb=XM_003122454 /gi=311247133 /ug=Ssc.7434 /len=1753"	-	"GO:0016772//transferase activity, transferring phosphorus-containing groups"	GO:0006796//phosphate metabolic process	"gi|297288800|ref|XP_001084115.2|/3.36397e-53/PREDICTED: cyclin-dependent kinase 2-associated protein 2-like, partial [Macaca mulatta]"
gnl|UG|Ssc#S21579452	5	1.44	6	1.72	6	1.8	"UMC-pd6end2-001-f11 Endometrium gilt D6 of estrous cycle pd6end Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO992412 /gi=51351686 /ug=Ssc.86649 /len=289"	-	-	-	-
gnl|UG|Ssc#S46878762	2	0.58	2	0.57	5	1.5	"PREDICTED: Sus scrofa CDC-like kinase 3, transcript variant 1 (CLK3), mRNA /cds=p(356,1828) /gb=XM_001927924 /gi=311260799 /ug=Ssc.3463 /len=2138"	GO:0030141//stored secretory granule	GO:0004672//protein kinase activity;GO:0032559	GO:0006468//protein phosphorylation	gi|83745112|ref|NP_031739.3|/0/dual specificity protein kinase CLK3 [Mus musculus]
gnl|UG|Ssc#S46878233	83	23.9	128	36.59	49	14.73	"PREDICTED: Sus scrofa histone H2B type 1-B-like (LOC100152507), mRNA /cds=p(57,437) /gb=XM_001926427 /gi=311277318 /ug=Ssc.31292 /len=2005"	GO:0000785//chromatin;GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding	GO:0034728	"gi|74004199|ref|XP_853895.1|/7.50816e-44/PREDICTED: similar to H2B histone family, member T [Canis familiaris]"
gnl|UG|Ssc#S39983002	9	2.59	11	3.14	8	2.4	"rebs12c_n12.y1 ebs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW078067 /gi=181355359 /ug=Ssc.4241 /len=583"	-	-	-	-
gnl|UG|Ssc#S35169497	4	1.15	2	0.57	5	1.5	"Sus scrofa mRNA, clone:THY010006B12, expressed in thymus /gb=AK238607 /gi=115550342 /ug=Ssc.21424 /len=2291"	-	-	-	gi|115497950|ref|NP_001068624.1|/2.94733e-140/regulation of nuclear pre-mRNA domain-containing protein 1A [Bos taurus]
gnl|UG|Ssc#S18383491	6	1.73	8	2.29	8	2.4	"934514 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK463600 /gi=40834881 /ug=Ssc.41410 /len=876"	-	-	-	gi|301788168|ref|XP_002929502.1|/1.11803e-17/PREDICTED: YTH domain-containing protein 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58314660	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa alpha- and gamma-adaptin-binding protein p34-like (LOC100517743), mRNA /cds=p(1,1029) /gb=XM_003121743 /gi=311245339 /ug=Ssc.6090 /len=2815"	GO:0044424//intracellular part	-	GO:0006810//transport	gi|311245340|ref|XP_003121791.1|/0/PREDICTED: alpha- and gamma-adaptin-binding protein p34-like [Sus scrofa]
gnl|UG|Ssc#S46875693	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa nuclear RNA export factor 2B (NXF2B), mRNA /cds=p(1,1908) /gb=XM_001924728 /gi=311276664 /ug=Ssc.34536 /len=1908"	GO:0043234//protein complex;GO:0005856//cytoskeleton;GO:0044444//cytoplasmic part;GO:0005654//nucleoplasm	GO:0003676//nucleic acid binding	GO:0043170;GO:0006405//RNA export from nucleus;GO:0032501//multicellular organismal process	gi|311276665|ref|XP_001924763.2|/0/PREDICTED: nuclear RNA export factor 2-like [Sus scrofa]
gnl|UG|Ssc#S23758628	15	4.32	11	3.14	20	6.01	"1115801 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN116247 /gi=59810507 /ug=Ssc.21577 /len=827"	-	-	-	-
gnl|UG|Ssc#S40314975	0	0	0	0	2	0.6	"rnbm21b_n13.y1 nbm Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW409582 /gi=182718079 /ug=Ssc.68881 /len=546"	-	-	-	gi|300872546|gb|ADK39026.1|/2.01285e-20/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S35165086	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:PBL010086C04, expressed in periphral blood mononuclear cell /gb=AK237051 /gi=115554640 /ug=Ssc.32065 /len=2535"	GO:0044444//cytoplasmic part	GO:0043169//cation binding;GO:0009975//cyclase activity;GO:0016301//kinase activity;GO:0032559	GO:0019400;GO:0006796//phosphate metabolic process	gi|311247536|ref|XP_003122689.1|/0/PREDICTED: bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing)-like [Sus scrofa]
gnl|UG|Ssc#S46879630	5	1.44	5	1.43	8	2.4	"PREDICTED: Sus scrofa NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) (NDUFS2), mRNA /cds=p(406,1827) /gb=XM_001927666 /gi=311253959 /ug=Ssc.7201 /len=2021"	GO:0005746//mitochondrial respiratory chain	GO:0043169//cation binding;GO:0051536//iron-sulfur cluster binding;GO:0000166//nucleotide binding;GO:0050136//NADH dehydrogenase (quinone) activity;GO:0048037//cofactor binding	GO:0022904//respiratory electron transport chain;GO:0051234//establishment of localization;GO:0006950//response to stress	"gi|311253960|ref|XP_001927701.2|/0/PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S58313416	3	0.86	0	0	3	0.9	"PREDICTED: Sus scrofa WEE1 homolog (S. pombe) (WEE1), mRNA /cds=p(290,2230) /gb=XM_003122982 /gi=311248217 /ug=Ssc.3915 /len=3406"	GO:0031981//nuclear lumen	GO:0046872//metal ion binding;GO:0004713//protein tyrosine kinase activity;GO:0032559	GO:0007050//cell cycle arrest;GO:0006468//protein phosphorylation;GO:0048858//cell projection morphogenesis;GO:0007163//establishment or maintenance of cell polarity;GO:0007010//cytoskeleton organization;GO:0000087//M phase of mitotic cell cycle;GO:0051320;GO:0007599//hemostasis	gi|73988828|ref|XP_534051.2|/0/PREDICTED: similar to Wee1-like protein kinase (WEE1hu) [Canis familiaris]
gnl|UG|Ssc#S29989612	13	3.74	32	9.15	12	3.61	"PDUts2085H01 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2085H01 5' similar to homologue to ref|NM_003566.1| Homo sapiens early endosome antigen 1, 162kD (EEA1), mRNA, mRNA sequence /clone=PDUts2085H01 /clone_end=5' /gb=CX064086 /gi=84140228 /ug=Ssc.51553 /len=629"	GO:0005626//insoluble fraction;GO:0019898//extrinsic to membrane;GO:0005769//early endosome	GO:0046914//transition metal ion binding;GO:0035091//phosphatidylinositol binding;GO:0042802//identical protein binding	GO:0006944//cellular membrane fusion;GO:0016197//endosome transport	"gi|301785403|ref|XP_002928116.1|/6.15153e-31/PREDICTED: LOW QUALITY PROTEIN: early endosome antigen 1-like, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S5992523	0	0	0	0	0	0	"120605 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=AW786944 /gi=7843720 /ti=447571692 /ug=Ssc.78966 /len=536"	GO:0044429//mitochondrial part	GO:0004812//aminoacyl-tRNA ligase activity;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|149728716|ref|XP_001500886.1|/7.88625e-83/PREDICTED: similar to Probable leucyl-tRNA synthetase, mitochondrial precursor (Leucine--tRNA ligase) (LeuRS) [Equus caballus]"
gnl|UG|Ssc#S35164089	2954	850.47	9948	2843.62	5007	1504.74	"Sus scrofa mRNA, clone:SPL010019E10, expressed in spleen /gb=AK237270 /gi=115555637 /ug=Ssc.19490 /len=1166"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0015934//large ribosomal subunit	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	gi|301753056|ref|XP_002912365.1|/3.11362e-67/PREDICTED: 60S ribosomal protein L23a-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58309264	0	0	0	0	0	0	"PREDICTED: Sus scrofa mitogen-activated protein kinase kinase kinase 10-like (LOC100521453), partial mRNA /cds=p(1,3249) /gb=XM_003127136 /gi=311257560 /ug=Ssc.91230 /len=3249"	-	GO:0003712//transcription cofactor activity;GO:0042802//identical protein binding;GO:0032559;GO:0017048//Rho GTPase binding;GO:0004709//MAP kinase kinase kinase activity	GO:0043410//positive regulation of MAPKKK cascade;GO:0001822//kidney development;GO:0048732//gland development;GO:0012502//induction of programmed cell death;GO:0000187//activation of MAPK activity	"gi|311257561|ref|XP_003127184.1|/0/PREDICTED: mitogen-activated protein kinase kinase kinase 10-like, partial [Sus scrofa]"
gnl|UG|Ssc#S40362920	866	249.33	692	197.81	2935	882.05	"rnlu1811b_j14.y1 nlu Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW457527 /gi=182707535 /ug=Ssc.67582 /len=526"	-	-	-	gi|300872546|gb|ADK39026.1|/5.20658e-23/beta-geo [cloning vector pPNT]
gnl|UG|Ssc#S35330342	0	0	2	0.57	0	0	"SusFleck_BFN_0013_0016_5_pCNS_E12 SusFleck Backfat Normalized Sus scrofa cDNA clone 0013_0016_E12 5', mRNA sequence /clone=0013_0016_E12 /clone_end=5' /gb=DT328739 /gi=116348263 /ug=Ssc.90063 /len=837"	-	GO:0005083//small GTPase regulator activity	GO:0007165//signal transduction	gi|194224111|ref|XP_001915583.1|/6.71282e-09/PREDICTED: similar to Ras and Rab interactor 2 [Equus caballus]
gnl|UG|Ssc#S58301311	10	2.88	5	1.43	8	2.4	"PREDICTED: Sus scrofa coiled-coil domain-containing protein 22-like (LOC100512878), mRNA /cds=p(183,2066) /gb=XM_003135083 /gi=311276280 /ug=Ssc.43312 /len=2360"	-	-	-	gi|311276281|ref|XP_003135131.1|/0/PREDICTED: LOW QUALITY PROTEIN: coiled-coil domain-containing protein 22-like [Sus scrofa]
gnl|UG|Ssc#S35165549	2	0.58	2	0.57	0	0	"Sus scrofa mRNA, clone:UTR010016H08, expressed in uterus /gb=AK239972 /gi=115554177 /ug=Ssc.55383 /len=1353"	GO:0043231//intracellular membrane-bounded organelle	GO:0030528//transcription regulator activity;GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	"GO:0006351//transcription, DNA-dependent"	gi|6958293|gb|AAF32518.1|AF119256_1/3.47439e-52/PATZ [Homo sapiens]
gnl|UG|Ssc#S31101743	4	1.15	2	0.57	3	0.9	"1497057 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DY405581 /gi=87206884 /ug=Ssc.18181 /len=718"	GO:0005815//microtubule organizing center;GO:0005930//axoneme	GO:0015631//tubulin binding	GO:0007067//mitosis;GO:0010927	gi|301776625|ref|XP_002923729.1|/1.89125e-96/PREDICTED: b9 domain-containing protein 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58311749	15	4.32	5	1.43	2	0.6	"PREDICTED: Sus scrofa heat shock protein 75 kDa, mitochondrial-like (LOC100515536), mRNA /cds=p(1,2184) /gb=XM_003124654 /gi=311251622 /ug=Ssc.1933 /len=2326"	GO:0043231//intracellular membrane-bounded organelle	GO:0032813//tumor necrosis factor receptor superfamily binding;GO:0032559	GO:0006979//response to oxidative stress;GO:0044267//cellular protein metabolic process	"gi|311251623|ref|XP_003124702.1|/0/PREDICTED: LOW QUALITY PROTEIN: heat shock protein 75 kDa, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S15183270	2	0.58	0	0	3	0.9	"Sus scrofa rho GTPase mRNA, complete cds; nuclear gene for mitochondrial product /cds=p(65,1927) /gb=AY247739 /gi=30025663 /ug=Ssc.78739 /len=1929"	GO:0019866//organelle inner membrane;GO:0031306//intrinsic to mitochondrial outer membrane	GO:0046872//metal ion binding;GO:0032561;GO:0016787//hydrolase activity	"GO:0012501//programmed cell death;GO:0035556//intracellular signal transduction;GO:0034643//establishment of mitochondrion localization, microtubule-mediated;GO:0009966//regulation of signal transduction"	gi|47523714|ref|NP_999490.1|/0/mitochondrial Rho GTPase 2 [Sus scrofa]
gnl|UG|Ssc#S58311841	0	0	0	0	7	2.1	"PREDICTED: Sus scrofa dynein heavy chain 3, axonemal-like (LOC100511869), mRNA /cds=p(1,12090) /gb=XM_003124566 /gi=311251428 /ug=Ssc.38103 /len=12090"	GO:0030286//dynein complex;GO:0005930//axoneme	GO:0003774//motor activity;GO:0032559	GO:0048870//cell motility;GO:0007017//microtubule-based process	"gi|311251429|ref|XP_003124614.1|/0/PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 3, axonemal-like [Sus scrofa]"
gnl|UG|Ssc#S35169167	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:LVR010057A08, expressed in liver /gb=AK232502 /gi=115550672 /ug=Ssc.19554 /len=2165"	GO:0044444//cytoplasmic part	GO:0070566//adenylyltransferase activity;GO:0032559	GO:0006766//vitamin metabolic process;GO:0009108//coenzyme biosynthetic process;GO:0046443//FAD metabolic process	gi|41872389|ref|NP_079483.3|/0/FAD synthase isoform 1 [Homo sapiens]
gnl|UG|Ssc#S46880747	27	7.77	5	1.43	26	7.81	"PREDICTED: Sus scrofa M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) (MPHOSPH10), mRNA /cds=p(472,2514) /gb=XM_001927513 /gi=311245154 /ug=Ssc.51079 /len=2616"	GO:0030529//ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0008380//RNA splicing;GO:0042254//ribosome biogenesis	gi|311245155|ref|XP_001927548.2|/0/PREDICTED: u3 small nucleolar ribonucleoprotein protein MPP10 [Sus scrofa]
gnl|UG|Ssc#S58310950	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa glycosylphosphatidylinositol anchor attachment protein 1 homolog (yeast) (GPAA1), mRNA /cds=p(73,1938) /gb=XM_003125442 /gi=311253270 /ug=Ssc.16706 /len=2015"	-	-	-	-
gnl|UG|Ssc#S40153282	14	4.03	6	1.72	3	0.9	"rhyp18c_o17.y1 hyp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW248189 /gi=182582714 /ug=Ssc.37805 /len=618"	GO:0005740//mitochondrial envelope;GO:0016020//membrane	GO:0003676//nucleic acid binding;GO:0008408//3'-5' exonuclease activity;GO:0016779//nucleotidyltransferase activity	GO:0006401//RNA catabolic process;GO:0010467//gene expression	gi|73969672|ref|XP_538497.2|/3.49301e-92/PREDICTED: similar to polyribonucleotide nucleotidyltransferase 1 isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58312419	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa matrin-3-like, transcript variant 2 (LOC100521716), mRNA /cds=p(267,2960) /gb=XM_003123978 /gi=311250251 /ug=Ssc.7542 /len=4633"	GO:0019866//organelle inner membrane;GO:0034399//nuclear periphery	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311250252|ref|XP_003124026.1|/0/PREDICTED: matrin-3-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S20116576	21	6.05	3	0.86	14	4.21	"Sus scrofa topoisomersae II (TOPOII), mRNA /cds=p(137,4738) /gb=NM_213884 /gi=47523093 /ug=Ssc.14506 /len=5724"	GO:0043234//protein complex;GO:0000794//condensed nuclear chromosome;GO:0005813//centrosome	"GO:0003916//DNA topoisomerase activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0032559;GO:0042623//ATPase activity, coupled;GO:0042802//identical protein binding;GO:0019901//protein kinase binding;GO:0032182//small conjugating protein binding;GO:0046983//protein dimerization activity"	GO:0006915//apoptosis;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0048017//inositol lipid-mediated signaling;GO:0071780//mitotic cell cycle G2/M transition checkpoint;GO:0007059//chromosome segregation;GO:0009790//embryo development;GO:0009207;GO:0030261//chromosome condensation;GO:0006260//DNA replication;GO:0021533//cell differentiation in hindbrain;GO:0033554//cellular response to stress;GO:0007131//reciprocal meiotic recombination;GO:0045070//positive regulation of viral genome replication;GO:0009725//response to hormone stimulus	gi|47523094|ref|NP_999049.1|/0/DNA topoisomerase 2-alpha [Sus scrofa]
gnl|UG|Ssc#S55272266	0	0	0	0	0	0	"FS657356 full-length enriched swine cDNA library, adult colon Sus scrofa cDNA clone CLNT10004D10 5', mRNA sequence /clone=CLNT10004D10 /clone_end=5' /gb=FS657356 /gi=288270487 /ug=Ssc.93403 /len=831"	-	-	-	"gi|119575355|gb|EAW54960.1|/6.97924e-59/hypothetical protein, isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S58310710	7	2.02	0	0	2	0.6	"PREDICTED: Sus scrofa kin of IRRE like (Drosophila) (KIRREL), mRNA /cds=p(1,2226) /gb=XM_003125691 /gi=311254067 /ug=Ssc.77978 /len=2226"	GO:0031224//intrinsic to membrane;GO:0030054//cell junction;GO:0030425//dendrite	-	GO:0003008	gi|311254068|ref|XP_003125739.1|/0/PREDICTED: kin of IRRE-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S17510836	415	119.48	435	124.34	517	155.37	"BX666182 Sus Scrofa library (scag) Sus scrofa cDNA clone scag0005.c.06 3prim, mRNA sequence /clone=scag0005.c.06 /clone_end=3' /gb=BX666182 /gi=90235944 /ug=Ssc.1860 /len=853"	GO:0043231//intracellular membrane-bounded organelle;GO:0030286//dynein complex	GO:0005515//protein binding;GO:0003774//motor activity	GO:0048731;GO:0033043;GO:0006886//intracellular protein transport;GO:0040001//establishment of mitotic spindle localization;GO:0010721//negative regulation of cell development;GO:0048858//cell projection morphogenesis;GO:0007186//G-protein coupled receptor protein signaling pathway;GO:0022415;GO:0051704;GO:0000087//M phase of mitotic cell cycle;GO:0032319//regulation of Rho GTPase activity	gi|223950623|ref|NP_001138857.1|/5.22931e-49/dynein light chain Tctex-type 1 [Sus scrofa]
gnl|UG|Ssc#S23213057	130	37.43	92	26.3	169	50.79	"Sus scrofa clone Clu_4709.scr.msk.p1.Contig5, mRNA sequence /gb=AY609951 /gi=52351521 /ug=Ssc.39944 /len=1363"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0046914//transition metal ion binding;GO:0019787//small conjugating protein ligase activity	GO:0032446//protein modification by small protein conjugation;GO:0012501//programmed cell death	gi|153791581|ref|NP_001093178.1|/0/goliath homolog [Bos taurus]
gnl|UG|Ssc#S46880703	17	4.89	14	4	2	0.6	"PREDICTED: Sus scrofa dipeptidyl-peptidase 8, transcript variant 4 (DPP8), mRNA /cds=p(350,2998) /gb=XM_001929097 /gi=311245307 /ug=Ssc.12397 /len=3011"	GO:0031981//nuclear lumen	GO:0008238//exopeptidase activity	GO:0019538//protein metabolic process;GO:0002376//immune system process	gi|301756925|ref|XP_002914298.1|/0/PREDICTED: dipeptidyl peptidase 8-like isoform 1 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58301990	4	1.15	0	0	10	3.01	"PREDICTED: Sus scrofa e3 ubiquitin-protein ligase Itchy homolog (LOC100519750), mRNA /cds=p(175,2469) /gb=XM_003134407 /gi=311274748 /ug=Ssc.31722 /len=2469"	GO:0016020//membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031982//vesicle;GO:0005626//insoluble fraction;GO:0044444//cytoplasmic part	GO:0042379//chemokine receptor binding;GO:0019787//small conjugating protein ligase activity	GO:0000209//protein polyubiquitination;GO:0002666//positive regulation of T cell tolerance induction;GO:0016579//protein deubiquitination;GO:0043409//negative regulation of MAPKKK cascade;GO:0051707//response to other organism;GO:0030260//entry into host cell;GO:0001818//negative regulation of cytokine production;GO:0042130//negative regulation of T cell proliferation;GO:0043433//negative regulation of transcription factor activity;GO:0002698;GO:0006915//apoptosis;GO:0019941//modification-dependent protein catabolic process;GO:0016049//cell growth;GO:0009896;GO:0006952//defense response	gi|311274749|ref|XP_003134455.1|/0/PREDICTED: e3 ubiquitin-protein ligase Itchy homolog [Sus scrofa]
gnl|UG|Ssc#S58301275	8	2.3	7	2	15	4.51	"PREDICTED: Sus scrofa melanoma antigen family D, 2 (MAGED2), mRNA /cds=p(94,1872) /gb=XM_003135107 /gi=311276357 /ug=Ssc.81912 /len=2681"	-	-	-	gi|311276358|ref|XP_003135155.1|/0/PREDICTED: melanoma-associated antigen D2-like [Sus scrofa]
gnl|UG|Ssc#S20937024	35	10.08	114	32.59	43	12.92	"AJ648747 CSEQRAN19 Sus scrofa cDNA clone C0003265_I13, mRNA sequence /clone=C0003265_I13 /gb=AJ648747 /gi=49325592 /ug=Ssc.85576 /len=446"	GO:0000323//lytic vacuole;GO:0000267//cell fraction;GO:0048770;GO:0044421//extracellular region part	GO:0005488//binding;GO:0004175//endopeptidase activity	GO:0044248//cellular catabolic process;GO:0019538//protein metabolic process;GO:0007033//vacuole organization;GO:0048754//branching morphogenesis of a tube	"gi|149061702|gb|EDM12125.1|/6.6147e-27/cathepsin D, isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S36038433	2	0.58	0	0	0	0	"Sus scrofa selenoprotein X mRNA, complete cds /cds=p(63,413) /gb=EF113597 /gi=119114791 /ug=Ssc.5520 /len=1215"	GO:0043231//intracellular membrane-bounded organelle	"GO:0046914//transition metal ion binding;GO:0016671//oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor"	GO:0044267//cellular protein metabolic process	gi|148233558|ref|NP_001090929.1|/3.66532e-58/methionine-R-sulfoxide reductase B1 [Sus scrofa]
gnl|UG|Ssc#S29990177	9	2.59	24	6.86	9	2.7	"PDUts2092A05 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2092A05 5' similar to homologue to emb|AL160281.17| Human DNA sequence from clone RP11-21M7 on chromosome 1, complete sequence, mRNA sequence /clone=PDUts2092A05 /clone_end=5' /gb=CX064651 /gi=84140793 /ug=Ssc.33624 /len=502"	-	-	-	gi|119611422|gb|EAW91016.1|/4.27828e-13/hCG1813082 [Homo sapiens]
gnl|UG|Ssc#S40286779	0	0	2	0.57	0	0	"rmed21c_h18.y1 med Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW381686 /gi=182715613 /ug=Ssc.68790 /len=594"	-	-	-	-
gnl|UG|Ssc#S46877992	12	3.45	2	0.57	16	4.81	"PREDICTED: Sus scrofa zinc finger protein 451 (ZNF451), mRNA /cds=p(1,3171) /gb=XM_001924600 /gi=311260218 /ug=Ssc.50549 /len=3843"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|194040266|ref|XP_001924635.1|/0/PREDICTED: zinc finger protein 451 [Sus scrofa]
gnl|UG|Ssc#S35172466	0	0	0	0	3	0.9	"Sus scrofa mRNA, clone:OVRM10012H04, expressed in ovary /gb=AK234742 /gi=115547369 /ug=Ssc.16221 /len=1639"	-	-	-	-
gnl|UG|Ssc#S35172058	2	0.58	0	0	0	0	"Sus scrofa mRNA, clone:OVRM10013E09, expressed in ovary /gb=AK234753 /gi=115547777 /ug=Ssc.94115 /len=1639"	GO:0032991//macromolecular complex	GO:0046872//metal ion binding;GO:0016778;GO:0030234//enzyme regulator activity	GO:0009117//nucleotide metabolic process	gi|281340450|gb|EFB16034.1|/0/hypothetical protein PANDA_012261 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58307152	0	0	0	0	0	0	"PREDICTED: Sus scrofa AP-1 complex-associated regulatory protein-like, transcript variant 1 (LOC100513805), mRNA /cds=p(153,1061) /gb=XM_003129243 /gi=311262662 /ug=Ssc.33493 /len=1556"	GO:0016023//cytoplasmic membrane-bounded vesicle;GO:0005768//endosome	-	GO:0006810//transport	gi|311262663|ref|XP_003129291.1|/1.35317e-143/PREDICTED: AP-1 complex-associated regulatory protein-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58315074	2	0.58	3	0.86	7	2.1	"PREDICTED: Sus scrofa hypothetical protein LOC100521532 (LOC100521532), mRNA /cds=p(330,1319) /gb=XM_003121330 /gi=311244256 /ug=Ssc.94262 /len=1319"	GO:0043231//intracellular membrane-bounded organelle	"GO:0046983//protein dimerization activity;GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups"	GO:0006720//isoprenoid metabolic process;GO:0051262//protein tetramerization;GO:0032501//multicellular organismal process;GO:0006743//ubiquinone metabolic process	gi|311244257|ref|XP_003121378.1|/0/PREDICTED: hypothetical protein LOC100521532 [Sus scrofa]
gnl|UG|Ssc#S29988747	3	0.86	0	0	7	2.1	"PDUts2076D12 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2076D12 5' similar to homologue to ref|NM_010058.1| Mus musculus dystrophia myotonica-containing WD repeat motif (Dmwd), mRNA, mRNA sequence /clone=PDUts2076D12 /clone_end=5' /gb=CX063221 /gi=84139363 /ug=Ssc.81001 /len=703"	-	-	GO:0022403	gi|194215632|ref|XP_001917075.1|/1.46903e-122/PREDICTED: similar to Dystrophia myotonica WD repeat-containing protein (Dystrophia myotonica-containing WD repeat motif protein) (DMR-N9 protein) (Protein 59) [Equus caballus]
gnl|UG|Ssc#S58305216	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa phosphoribosyl pyrophosphate synthetase-associated protein 1 (PRPSAP1), mRNA /cds=p(234,1391) /gb=XM_003131174 /gi=311266739 /ug=Ssc.1924 /len=1980"	GO:0032991//macromolecular complex	GO:0046872//metal ion binding;GO:0016778;GO:0005515//protein binding;GO:0030234//enzyme regulator activity	GO:0019222//regulation of metabolic process;GO:0009117//nucleotide metabolic process	gi|311266740|ref|XP_003131222.1|/0/PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58313577	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa cytoskeleton-associated protein 5-like (LOC100518470), mRNA /cds=p(85,4281) /gb=XM_003122837 /gi=311247894 /ug=Ssc.85348 /len=4281"	GO:0005815//microtubule organizing center;GO:0043234//protein complex	GO:0005488//binding	GO:0050657;GO:0031023//microtubule organizing center organization;GO:0007067//mitosis	gi|311247895|ref|XP_003122885.1|/0/PREDICTED: cytoskeleton-associated protein 5-like [Sus scrofa]
gnl|UG|Ssc#S39833245	0	0	0	0	0	0	"rche32_k9.y1 che Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EV928523 /gi=178531766 /ug=Ssc.90386 /len=503"	GO:0044464//cell part	GO:0046914//transition metal ion binding	-	gi|293340488|ref|XP_001081514.2|/3.68839e-32/PREDICTED: G patch domain containing 8-like [Rattus norvegicus]
gnl|UG|Ssc#S46878745	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa hypothetical protein LOC100153307 (LOC100153307), mRNA /cds=p(1,2418) /gb=XM_001926285 /gi=311260840 /ug=Ssc.20078 /len=3393"	GO:0031253//cell projection membrane;GO:0072372//primary cilium;GO:0005813//centrosome;GO:0043234//protein complex	GO:0003774//motor activity;GO:0015631//tubulin binding	GO:0006810//transport;GO:0014020;GO:0032401//establishment of melanosome localization;GO:0030092//regulation of flagellum assembly;GO:0031175//neuron projection development;GO:0050890//cognition;GO:0021543//pallium development;GO:0007610//behavior;GO:0031023//microtubule organizing center organization;GO:0003143//embryonic heart tube morphogenesis;GO:0042462//eye photoreceptor cell development;GO:0006629//lipid metabolic process;GO:0042384//cilium assembly;GO:0007281//germ cell development;GO:0060295;GO:0043954//cellular component maintenance;GO:0021544//subpallium development;GO:0007606//sensory perception of chemical stimulus;GO:0000910//cytokinesis;GO:0001894//tissue homeostasis	gi|311260841|ref|XP_001926320.2|/0/PREDICTED: hypothetical protein LOC100153307 [Sus scrofa]
gnl|UG|Ssc#S55326530	0	0	0	0	6	1.8	"Sus scrofa mRNA, clone:OVRM10070H07, expressed in ovary /gb=AK348121 /gi=288778296 /ug=Ssc.4969 /len=2140"	GO:0044429//mitochondrial part	GO:0016783//sulfurtransferase activity;GO:0042802//identical protein binding;GO:0048037//cofactor binding	GO:0042559//pteridine-containing compound biosynthetic process;GO:0009108//coenzyme biosynthetic process;GO:0016226//iron-sulfur cluster assembly;GO:0006766//vitamin metabolic process;GO:0000096//sulfur amino acid metabolic process;GO:0065003	gi|209571737|gb|ACI62524.1|/0/nitrogen fixation 1-like protein [Sus scrofa]
gnl|UG|Ssc#S29975173	0	0	0	0	0	0	"PDUts1095H02 Porcine testis cDNA library I Sus scrofa cDNA clone PDUts1095H02 5' similar to homologue to ref|NM_002756.2| Homo sapiens mitogen-activated protein kinase kinase 3 (MAP2K3), transcript variant A, mRNA, mRNA sequence /clone=PDUts1095H02 /clone_end=5' /gb=CV871831 /gi=84125791 /ug=Ssc.37742 /len=619"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0004712//protein serine/threonine/tyrosine kinase activity;GO:0032559	"GO:0007166//cell surface receptor linked signaling pathway;GO:0033674//positive regulation of kinase activity;GO:0006941//striated muscle contraction;GO:0006355//regulation of transcription, DNA-dependent;GO:0002224//toll-like receptor signaling pathway;GO:0001817//regulation of cytokine production;GO:0006464//protein modification process;GO:0000165//MAPKKK cascade"	gi|253584715|gb|ACT33197.1|/2.57251e-111/mitogen activated protein kinase kinase 3 [Homo sapiens]
gnl|UG|Ssc#S17516367	0	0	0	0	2	0.6	"BX670936 Sus Scrofa library (scac) Sus scrofa cDNA clone scac0033.n.04 5prim, mRNA sequence /clone=scac0033.n.04 /clone_end=5' /gb=BX670936 /gi=90245270 /ug=Ssc.55507 /len=930"	GO:0035097//histone methyltransferase complex;GO:0016604//nuclear body	GO:0046914//transition metal ion binding;GO:0005515//protein binding;GO:0018024//histone-lysine N-methyltransferase activity;GO:0003712//transcription cofactor activity	"GO:0002274;GO:0032526//response to retinoic acid;GO:0006355//regulation of transcription, DNA-dependent;GO:0002763//positive regulation of myeloid leukocyte differentiation;GO:0006305;GO:0002444;GO:0022402//cell cycle process;GO:0030522//intracellular receptor mediated signaling pathway;GO:0034968//histone lysine methylation"	gi|296209901|ref|XP_002807091.1|/2.85633e-83/PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase MLL5-like [Callithrix jacchus]
gnl|UG|Ssc#S35173720	24	6.91	13	3.72	24	7.21	"Sus scrofa mRNA, clone:UTR010058G08, expressed in uterus /gb=AK240357 /gi=115546115 /ug=Ssc.10432 /len=1065"	GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0048513//organ development	gi|305855160|ref|NP_001182285.1|/1.29736e-93/motile sperm domain-containing protein 3 [Sus scrofa]
gnl|UG|Ssc#S39981398	0	0	2	0.57	4	1.2	"rebs14c_k17.y1 ebs Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW076463 /gi=181342364 /ug=Ssc.86825 /len=671"	-	-	-	-
gnl|UG|Ssc#S58301812	19	5.47	17	4.86	0	0	"PREDICTED: Sus scrofa zyxin-like (LOC100524720), mRNA /cds=p(1,1323) /gb=XM_003134592 /gi=311275214 /ug=Ssc.16678 /len=1381"	-	-	-	-
gnl|UG|Ssc#S35167146	2	0.58	4	1.14	3	0.9	"Sus scrofa mRNA, clone:LVRM10028H06, expressed in liver /gb=AK232798 /gi=115552593 /ug=Ssc.56312 /len=1965"	GO:0005924//cell-substrate adherens junction;GO:0032432//actin filament bundle;GO:0005884//actin filament;GO:0044444//cytoplasmic part	-	GO:0065008;GO:0034330;GO:0007010//cytoskeleton organization	gi|198282129|ref|NP_001094734.1|/0/fermitin family homolog 2 [Bos taurus]
gnl|UG|Ssc#S58308977	31	8.93	17	4.86	25	7.51	"PREDICTED: Sus scrofa CCR4-NOT transcription complex, subunit 3 (CNOT3), mRNA /cds=p(280,2553) /gb=XM_003127414 /gi=311258145 /ug=Ssc.27072 /len=2826"	GO:0044444//cytoplasmic part	GO:0005488//binding	"GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|311258146|ref|XP_003127462.1|/0/PREDICTED: CCR4-NOT transcription complex subunit 3-like [Sus scrofa]
gnl|UG|Ssc#S58305195	0	0	4	1.14	4	1.2	"PREDICTED: Sus scrofa integrin beta-4-like (LOC100521988), mRNA /cds=p(92,5590) /gb=XM_003131195 /gi=311266782 /ug=Ssc.8924 /len=5889"	GO:0005887//integral to plasma membrane;GO:0016323//basolateral plasma membrane;GO:0044444//cytoplasmic part;GO:0005626//insoluble fraction	GO:0005488//binding;GO:0004871//signal transducer activity	GO:0030035//microspike assembly;GO:0032501//multicellular organismal process;GO:0031589//cell-substrate adhesion;GO:0007166//cell surface receptor linked signaling pathway;GO:0007044//cell-substrate junction assembly	gi|311266783|ref|XP_003131243.1|/0/PREDICTED: LOW QUALITY PROTEIN: integrin beta-4-like [Sus scrofa]
gnl|UG|Ssc#S18284101	152	43.76	63	18.01	83	24.94	"BP439998 full-length enriched swine cDNA library, adult lung Sus scrofa cDNA clone LNG010070H01 5', mRNA sequence /clone=LNG010070H01 /clone_end=5' /gb=BP439998 /gi=40430065 /ug=Ssc.23638 /len=577"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	"GO:0042623//ATPase activity, coupled;GO:0008135//translation factor activity, nucleic acid binding;GO:0032559"	"GO:0006412//translation;GO:0009887//organ morphogenesis;GO:0000288//nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay"	gi|270007520|gb|EFA03968.1|/1.37989e-65/hypothetical protein TcasGA2_TC014113 [Tribolium castaneum]
gnl|UG|Ssc#S58301788	2	0.58	2	0.57	2	0.6	"PREDICTED: Sus scrofa aarF domain containing kinase 2 (ADCK2), mRNA /cds=p(1,1881) /gb=XM_003134607 /gi=311275265 /ug=Ssc.19647 /len=2177"	GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane	GO:0004672//protein kinase activity;GO:0032559	GO:0008152//metabolic process	gi|311275266|ref|XP_003134655.1|/0/PREDICTED: uncharacterized aarF domain-containing protein kinase 2-like [Sus scrofa]
gnl|UG|Ssc#S19541569	2	0.58	11	3.14	2	0.6	"946386 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN157665 /gi=46172095 /ug=Ssc.3085 /len=746"	-	-	-	-
gnl|UG|Ssc#S58313569	6	1.73	0	0	4	1.2	"PREDICTED: Sus scrofa ATG13 autophagy related 13 homolog (S. cerevisiae) (ATG13), mRNA /cds=p(335,1888) /gb=XM_003122826 /gi=311247910 /ug=Ssc.32450 /len=2385"	GO:0043234//protein complex;GO:0044444//cytoplasmic part	GO:0005488//binding	GO:0044248//cellular catabolic process;GO:0007033//vacuole organization	gi|311247911|ref|XP_003122874.1|/0/PREDICTED: autophagy-related protein 13-like [Sus scrofa]
gnl|UG|Ssc#S35169954	2	0.58	2	0.57	2	0.6	"Sus scrofa mRNA, clone:TES010063E12, expressed in testis /gb=AK238545 /gi=115549885 /ug=Ssc.3971 /len=1354"	GO:0000323//lytic vacuole	"GO:0004553//hydrolase activity, hydrolyzing O-glycosyl compounds;GO:0043167//ion binding"	GO:0006026	gi|311246994|ref|XP_003122431.1|/0/PREDICTED: chitinase domain-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S40588337	0	0	0	0	0	0	"rvin033_d10.y1 vin Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW675050 /gi=183127399 /ug=Ssc.92744 /len=388"	GO:0031981//nuclear lumen	GO:0005488//binding	-	gi|301753601|ref|XP_002912615.1|/8.57429e-51/PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat and KH domain-containing protein 1-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58308841	38	10.94	8	2.29	14	4.21	"PREDICTED: Sus scrofa phosphogluconate dehydrogenase (PGD), mRNA /cds=p(90,1541) /gb=XM_003127557 /gi=311258420 /ug=Ssc.30761 /len=1972"	GO:0044444//cytoplasmic part;GO:0042598//vesicular fraction	"GO:0016616//oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;GO:0000166//nucleotide binding;GO:0030246//carbohydrate binding;GO:0048037//cofactor binding"	GO:0019520;GO:0006098//pentose-phosphate shunt;GO:0019321//pentose metabolic process	"gi|311258421|ref|XP_003127605.1|/0/PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating [Sus scrofa]"
gnl|UG|Ssc#S58306758	0	0	0	0	0	0	"PREDICTED: Sus scrofa coiled-coil-helix-coiled-coil-helix domain-containing protein 8-like (LOC100514530), mRNA /cds=p(242,496) /gb=XM_003129636 /gi=311263464 /ug=Ssc.12501 /len=874"	-	-	-	gi|311263465|ref|XP_003129684.1|/1.44457e-33/PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 8-like [Sus scrofa]
gnl|UG|Ssc#S18554243	12	3.45	4	1.14	22	6.61	"BX922894 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0022.m.05 5prim, mRNA sequence /clone=scan0022.m.05 /clone_end=5' /gb=BX922894 /gi=90240765 /ug=Ssc.4724 /len=854"	-	-	-	-
gnl|UG|Ssc#S35174135	56	16.12	58	16.58	54	16.23	"Sus scrofa mRNA, clone:AMP010048B02, expressed in alveolar macrophage /gb=AK230815 /gi=115545700 /ug=Ssc.22072 /len=1969"	GO:0031224//intrinsic to membrane	GO:0005198//structural molecule activity	GO:0030154//cell differentiation	gi|311254527|ref|XP_001928014.2|/1.45765e-100/PREDICTED: tetraspanin-2 [Sus scrofa]
gnl|UG|Ssc#S35165353	10	2.88	33	9.43	15	4.51	"Sus scrofa mRNA, clone:LVRM10136B10, expressed in liver /gb=AK233383 /gi=115554373 /ug=Ssc.2138 /len=1738"	-	-	-	gi|311265322|ref|XP_003130597.1|/1.26396e-60/PREDICTED: hypothetical protein LOC100511034 [Sus scrofa]
gnl|UG|Ssc#S23768433	6	1.73	4	1.14	5	1.5	"1139952 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN126052 /gi=59820331 /ug=Ssc.10254 /len=855"	GO:0016020//membrane;GO:0005624//membrane fraction;GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0004871//signal transducer activity	-	"gi|194226106|ref|XP_001490602.2|/5.39588e-78/PREDICTED: similar to zinc finger, MYND domain containing 19 [Equus caballus]"
gnl|UG|Ssc#S58306231	26	7.49	106	30.3	35	10.52	"PREDICTED: Sus scrofa glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like (LOC100525767), mRNA /cds=p(147,1226) /gb=XM_003130167 /gi=311264537 /ug=Ssc.32672 /len=2020"	GO:0031224//intrinsic to membrane	"GO:0043169//cation binding;GO:0048531//beta-1,3-galactosyltransferase activity"	GO:0048646//anatomical structure formation involved in morphogenesis;GO:0016266//O-glycan processing;GO:0048513//organ development;GO:0048869	gi|311264538|ref|XP_003130215.1|/0/PREDICTED: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like [Sus scrofa]
gnl|UG|Ssc#S58310204	0	0	0	0	0	0	"PREDICTED: Sus scrofa cyclic AMP-dependent transcription factor ATF-7-like (LOC100518609), mRNA /cds=p(1,1473) /gb=XM_003126196 /gi=311255466 /ug=Ssc.28331 /len=1473"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0005515//protein binding	"GO:0051704;GO:0006351//transcription, DNA-dependent"	gi|311255467|ref|XP_003126244.1|/0/PREDICTED: cyclic AMP-dependent transcription factor ATF-7-like [Sus scrofa]
gnl|UG|Ssc#S58310331	15	4.32	28	8	15	4.51	"PREDICTED: Sus scrofa RNA-binding protein 9-like (LOC100513594), mRNA /cds=p(393,1523) /gb=XM_003126046 /gi=311255178 /ug=Ssc.11620 /len=1804"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0003712//transcription cofactor activity;GO:0005515//protein binding	GO:0008283//cell proliferation;GO:0030518//steroid hormone receptor signaling pathway;GO:0006396//RNA processing	"gi|119580477|gb|EAW60073.1|/5.50669e-161/RNA binding motif protein 9, isoform CRA_b [Homo sapiens]"
gnl|UG|Ssc#S23213562	63	18.14	96	27.44	14	4.21	"Sus scrofa clone Clu_10760.scr.msk.p1.Contig1, mRNA sequence /gb=AY609415 /gi=52350700 /ug=Ssc.26624 /len=1805"	-	GO:0016787//hydrolase activity;GO:0046914//transition metal ion binding	GO:0008152//metabolic process	gi|149743698|ref|XP_001498178.1|/0/PREDICTED: similar to phosphotriesterase related [Equus caballus]
gnl|UG|Ssc#S55325195	152	43.76	66	18.87	136	40.87	"Sus scrofa mRNA, clone:ADR010015D04, expressed in adrenal gland /gb=AK343262 /gi=288779677 /ug=Ssc.55591 /len=1346"	GO:0015935//small ribosomal subunit	GO:0003676//nucleic acid binding;GO:0005198//structural molecule activity	GO:0006412//translation;GO:0019080;GO:0031016//pancreas development	"gi|149062132|gb|EDM12555.1|/8.75199e-56/rCG47344, isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S20936520	16	4.61	6	1.72	15	4.51	"AJ648243 CSEQRAN19 Sus scrofa cDNA clone C0003264_B04, mRNA sequence /clone=C0003264_B04 /gb=AJ648243 /gi=49325088 /ug=Ssc.74101 /len=501"	GO:0031224//intrinsic to membrane	GO:0005488//binding	GO:0023052//signaling	gi|296193962|ref|XP_002744728.1|/2.80392e-89/PREDICTED: receptor expression-enhancing protein 5-like [Callithrix jacchus]
gnl|UG|Ssc#S58314507	0	0	0	0	4	1.2	"PREDICTED: Sus scrofa DENN/MADD domain containing 4C (DENND4C), mRNA /cds=p(1,6486) /gb=XM_003121895 /gi=311245735 /ug=Ssc.39534 /len=6583"	GO:0031224//intrinsic to membrane	-	-	gi|311245736|ref|XP_003121943.1|/0/PREDICTED: DENN domain-containing protein 4C [Sus scrofa]
gnl|UG|Ssc#S20937550	45	12.96	31	8.86	41	12.32	"AJ649273 CSEQRAN19 Sus scrofa cDNA clone C0003272_A13, mRNA sequence /clone=C0003272_A13 /gb=AJ649273 /gi=49326118 /ug=Ssc.74024 /len=547"	-	GO:0051998;GO:0005488//binding	GO:0006479//protein methylation	"gi|149067975|gb|EDM17527.1|/1.44628e-66/rCG40565, isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S20936778	113	32.53	54	15.44	33	9.92	"AJ648501 CSEQRAN19 Sus scrofa cDNA clone C0003264_N07, mRNA sequence /clone=C0003264_N07 /gb=AJ648501 /gi=49325346 /ug=Ssc.85564 /len=510"	GO:0044424//intracellular part	GO:0008289//lipid binding	GO:0008645//hexose transport;GO:0009888//tissue development;GO:0006950//response to stress;GO:0046470//phosphatidylcholine metabolic process;GO:0019318//hexose metabolic process	"gi|1706754|sp|P55053.3|FABP5_RAT/1.31546e-65/RecName: Full=Fatty acid-binding protein, epidermal; AltName: Full=Cutaneous fatty acid-binding protein; Short=C-FABP; AltName: Full=DA11; AltName: Full=Epidermal-type fatty acid-binding protein; Short=E-FABP; AltName: Full=Fatty acid-binding protein 5"
gnl|UG|Ssc#S46879674	15	4.32	8	2.29	24	7.21	"PREDICTED: Sus scrofa TIP41-like protein-like (LOC100155988), mRNA /cds=p(43,861) /gb=XM_001928523 /gi=311253882 /ug=Ssc.13402 /len=2885"	GO:0044424//intracellular part	GO:0005488//binding	GO:0032515//negative regulation of phosphoprotein phosphatase activity;GO:0006974//response to DNA damage stimulus	gi|194036790|ref|XP_001928558.1|/1.31989e-140/PREDICTED: TIP41-like protein-like [Sus scrofa]
gnl|UG|Ssc#S55321995	44	12.67	38	10.86	40	12.02	"Sus scrofa mRNA, clone:TES010007A08, expressed in testis /gb=AK351149 /gi=288782877 /ug=Ssc.81141 /len=1219"	GO:0031090//organelle membrane;GO:0005740//mitochondrial envelope;GO:0005887//integral to plasma membrane	GO:0004175//endopeptidase activity;GO:0005515//protein binding	GO:0006996//organelle organization;GO:0008344//adult locomotory behavior;GO:0006917//induction of apoptosis;GO:0007420//brain development;GO:0035264//multicellular organism growth;GO:0019538//protein metabolic process;GO:0048468//cell development	"gi|118151008|ref|NP_001071424.1|/9.32385e-163/serine protease HTRA2, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S35170610	29	8.35	5	1.43	52	15.63	"Sus scrofa mRNA, clone:LNG010044D03, expressed in lung /gb=AK231905 /gi=115549229 /ug=Ssc.43328 /len=1153"	GO:0030665//clathrin coated vesicle membrane;GO:0048770	GO:0005515//protein binding	GO:0044267//cellular protein metabolic process;GO:0001505//regulation of neurotransmitter levels;GO:0043066//negative regulation of apoptosis	"gi|224078327|ref|XP_002197790.1|/4.02204e-86/PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 5 [Taeniopygia guttata]"
gnl|UG|Ssc#S35169535	68	19.58	60	17.15	30	9.02	"Sus scrofa mRNA, clone:TES010072D02, expressed in testis /gb=AK238569 /gi=115550304 /ug=Ssc.21852 /len=1709"	GO:0044432//endoplasmic reticulum part	GO:0005515//protein binding	GO:0044267//cellular protein metabolic process;GO:0015031//protein transport	gi|296192873|ref|XP_002744276.1|/0/PREDICTED: nucleotide exchange factor SIL1-like [Callithrix jacchus]
gnl|UG|Ssc#S49953840	0	0	0	0	2	0.6	"Sus scrofa acyl-CoA synthetase short-chain family member 2 (ACSS2) mRNA, complete cds /cds=p(52,2157) /gb=FJ458420 /gi=217039100 /ug=Ssc.54906 /len=2920"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0016405//CoA-ligase activity;GO:0032559	GO:0006629//lipid metabolic process;GO:0019541//propionate metabolic process;GO:0006084//acetyl-CoA metabolic process;GO:0006067//ethanol metabolic process;GO:0006083//acetate metabolic process	"gi|219521950|ref|NP_001137167.1|/0/acetyl-coenzyme A synthetase, cytoplasmic [Sus scrofa]"
gnl|UG|Ssc#S46878714	20	5.76	12	3.43	28	8.41	"PREDICTED: Sus scrofa small subunit of serine palmitoyltransferase A-like (LOC100156815), mRNA /cds=p(1,321) /gb=XM_001926473 /gi=194038781 /ug=Ssc.5692 /len=1385"	GO:0031211//endoplasmic reticulum palmitoyltransferase complex;GO:0031224//intrinsic to membrane	GO:0005488//binding;GO:0016454	GO:0006665//sphingolipid metabolic process	gi|194038782|ref|XP_001926508.1|/6.77416e-43/PREDICTED: small subunit of serine palmitoyltransferase A-like [Sus scrofa]
gnl|UG|Ssc#S55325677	25	7.2	56	16.01	28	8.41	"Sus scrofa mRNA, clone:PBL010081H02, expressed in peripheral blood mononuclear cells /gb=AK348974 /gi=288779149 /ug=Ssc.15155 /len=2634"	-	-	-	-
gnl|UG|Ssc#S6055284	32	9.21	8	2.29	20	6.01	"MI-P-E4-ahg-f-03-1-UM.s1 MI-P-E4 Sus scrofa cDNA clone MI-P-E4-ahg-f-03-1-UM 3', mRNA sequence /clone=MI-P-E4-ahg-f-03-1-UM /clone_end=3' /gb=BQ599006 /gi=21545732 /ug=Ssc.81394 /len=423"	-	-	-	-
gnl|UG|Ssc#S6026175	4	1.15	0	0	3	0.9	"233777 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=BF080962 /gi=10874792 /ti=470933252 /ug=Ssc.80274 /len=520"	GO:0044444//cytoplasmic part;GO:0005626//insoluble fraction	GO:0046872//metal ion binding;GO:0019904//protein domain specific binding;GO:0005102//receptor binding	GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway	gi|73999869|ref|XP_535441.2|/3.87335e-44/PREDICTED: similar to zinc finger protein 106 homolog isoform 1 [Canis familiaris]
gnl|UG|Ssc#S58312745	33	9.5	65	18.58	20	6.01	"PREDICTED: Sus scrofa protein RMD5 homolog B-like (LOC100510951), mRNA /cds=p(198,1379) /gb=XM_003123672 /gi=311249580 /ug=Ssc.11167 /len=2071"	-	-	-	gi|311249581|ref|XP_003123720.1|/0/PREDICTED: protein RMD5 homolog B-like [Sus scrofa]
gnl|UG|Ssc#S46878413	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa alanyl-tRNA synthetase 2, mitochondrial (putative) (AARS2), mRNA /cds=p(1,2958) /gb=XM_001929593 /gi=311260522 /ug=Ssc.43283 /len=3496"	GO:0043231//intracellular membrane-bounded organelle	GO:0004812//aminoacyl-tRNA ligase activity;GO:0043169//cation binding;GO:0003723//RNA binding;GO:0032559	GO:0006418//tRNA aminoacylation for protein translation	"gi|194039401|ref|XP_001929628.1|/0/PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S55324455	0	0	0	0	0	0	"Sus scrofa mRNA, clone:SMG010001C07, expressed in submaxillary gland /gb=AK349951 /gi=288780417 /ug=Ssc.25354 /len=1224"	-	GO:0004175//endopeptidase activity	GO:0019538//protein metabolic process	gi|50054435|ref|NP_001001911.1|/1.84393e-150/kallikrein 1 [Sus scrofa]
gnl|UG|Ssc#S58311552	331	95.3	167	47.74	268	80.54	"PREDICTED: Sus scrofa RAN binding protein 2 (RANBP2), partial mRNA /cds=p(1,8402) /gb=XM_003124849 /gi=311252033 /ug=Ssc.21677 /len=9281"	GO:0044444//cytoplasmic part;GO:0005635//nuclear envelope	GO:0017016//Ras GTPase binding;GO:0046914//transition metal ion binding;GO:0016859//cis-trans isomerase activity	GO:0044267//cellular protein metabolic process;GO:0050658//RNA transport;GO:0015758//glucose transport;GO:0006605//protein targeting;GO:0007067//mitosis	"gi|311252034|ref|XP_003124897.1|/0/PREDICTED: e3 SUMO-protein ligase RanBP2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S43134844	11	3.17	3	0.86	5	1.5	"Sus scrofa pigRAD51 mRNA for DNA repair protein RAD51, complete cds /cds=p(248,1267) /gb=AB355632 /gi=168085454 /ug=Ssc.22664 /len=1663"	GO:0016604//nuclear body;GO:0000795//synaptonemal complex;GO:0044429//mitochondrial part	GO:0008094//DNA-dependent ATPase activity;GO:0005515//protein binding;GO:0032559;GO:0043566//structure-specific DNA binding	GO:0042221//response to chemical stimulus;GO:0006261//DNA-dependent DNA replication;GO:0045003//double-strand break repair via synthesis-dependent strand annealing;GO:0009207;GO:0051054//positive regulation of DNA metabolic process;GO:0051259//protein oligomerization;GO:0022403	gi|178056768|ref|NP_001116653.1|/0/DNA repair protein RAD51 homolog 1 [Sus scrofa]
gnl|UG|Ssc#S58305471	8	2.3	2	0.57	4	1.2	"PREDICTED: Sus scrofa doublecortin-like kinase 1 (DCLK1), partial mRNA /cds=p(1,1604) /gb=XM_003130927 /gi=311266132 /ug=Ssc.45428 /len=1604"	GO:0016021//integral to membrane	GO:0004672//protein kinase activity;GO:0004871//signal transducer activity;GO:0032559	GO:0016477//cell migration;GO:0016192//vesicle-mediated transport;GO:0051707//response to other organism;GO:0006796//phosphate metabolic process;GO:0007420//brain development;GO:0048588//developmental cell growth;GO:0007165//signal transduction;GO:0021955//central nervous system neuron axonogenesis;GO:0006464//protein modification process	"gi|311266133|ref|XP_003130975.1|/0/PREDICTED: serine/threonine-protein kinase DCLK1-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58311707	29	8.35	12	3.43	9	2.7	"PREDICTED: Sus scrofa calpain-15-like (LOC100523542), mRNA /cds=p(7,3216) /gb=XM_003124692 /gi=311251707 /ug=Ssc.2781 /len=3216"	-	GO:0046872//metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0004197//cysteine-type endopeptidase activity	GO:0010467//gene expression;GO:0044238//primary metabolic process	gi|311251708|ref|XP_003124740.1|/0/PREDICTED: LOW QUALITY PROTEIN: calpain-15-like [Sus scrofa]
gnl|UG|Ssc#S46880019	8	2.3	0	0	7	2.1	"PREDICTED: Sus scrofa thrombospondin 3 (THBS3), mRNA /cds=p(14,2884) /gb=XM_001926844 /gi=311254174 /ug=Ssc.11559 /len=3133"	GO:0044444//cytoplasmic part	GO:0046872//metal ion binding;GO:0005539//glycosaminoglycan binding	GO:0003416;GO:0031589//cell-substrate adhesion;GO:0001503//ossification;GO:0060343	gi|311254175|ref|XP_001926879.2|/0/PREDICTED: thrombospondin-3-like [Sus scrofa]
gnl|UG|Ssc#S46879155	33	9.5	24	6.86	17	5.11	"PREDICTED: Sus scrofa myeloid leukemia factor 2-like, transcript variant 1 (LOC100154084), mRNA /cds=p(213,956) /gb=XM_001928013 /gi=311256269 /ug=Ssc.16555 /len=1541"	-	-	-	-
gnl|UG|Ssc#S35174125	0	0	2	0.57	0	0	"Sus scrofa mRNA, clone:AMP010049D06, expressed in alveolar macrophage /gb=AK230825 /gi=115545710 /ug=Ssc.24158 /len=2507"	GO:0044444//cytoplasmic part	GO:0004175//endopeptidase activity	GO:0019538//protein metabolic process;GO:0006605//protein targeting;GO:0044248//cellular catabolic process;GO:0007033//vacuole organization	gi|298231125|ref|NP_001177213.1|/0/cysteine protease ATG4C [Sus scrofa]
gnl|UG|Ssc#S40299182	19	5.47	24	6.86	9	2.7	"rmga08_n5.y1 mga Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW393789 /gi=182706835 /ug=Ssc.6398 /len=487"	-	-	-	-
gnl|UG|Ssc#S46879926	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa Y55F3AM.9 (LOC100153890), mRNA /cds=p(1047,2456) /gb=XM_001929665 /gi=311254360 /ug=Ssc.1279 /len=2907"	-	GO:0005488//binding	-	gi|194036265|ref|XP_001929700.1|/0/PREDICTED: protein FAM63A [Sus scrofa]
gnl|UG|Ssc#S58307079	86	24.76	121	34.59	48	14.43	"PREDICTED: Sus scrofa SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 (SMARCAD1), mRNA /cds=p(149,3232) /gb=XM_003129318 /gi=311262808 /ug=Ssc.7687 /len=4956"	GO:0034399//nuclear periphery	GO:0017111//nucleoside-triphosphatase activity;GO:0003676//nucleic acid binding;GO:0032559	GO:0006310//DNA recombination;GO:0051259//protein oligomerization;GO:0006753;GO:0006325//chromatin organization	gi|311262809|ref|XP_003129366.1|/0/PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like [Sus scrofa]
gnl|UG|Ssc#S46879686	3	0.86	2	0.57	4	1.2	"PREDICTED: Sus scrofa uncharacterized protein KIAA0146-like (LOC100153944), mRNA /cds=p(135,1244) /gb=XM_001926353 /gi=311253855 /ug=Ssc.27496 /len=1329"	-	-	-	gi|194036765|ref|XP_001926388.1|/0/PREDICTED: uncharacterized protein KIAA0146-like [Sus scrofa]
gnl|UG|Ssc#S46879477	0	0	0	0	0	0	"PREDICTED: Sus scrofa lethal(3)malignant brain tumor-like protein 2-like (LOC100157440), mRNA /cds=p(62,2182) /gb=XM_001929185 /gi=194037195 /ug=Ssc.19525 /len=2559"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003712//transcription cofactor activity;GO:0042393//histone binding	"GO:0006351//transcription, DNA-dependent;GO:0006325//chromatin organization"	gi|194037196|ref|XP_001929220.1|/0/PREDICTED: lethal(3)malignant brain tumor-like protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58304451	126	36.28	72	20.58	128	38.47	"PREDICTED: Sus scrofa fragile X mental retardation syndrome-related protein 2-like (LOC100512131), mRNA /cds=p(1,2400) /gb=XM_003131974 /gi=311268314 /ug=Ssc.16828 /len=3003"	-	-	-	-
gnl|UG|Ssc#S55324038	3	0.86	0	0	3	0.9	"Sus scrofa mRNA, clone:SPL010005B01, expressed in spleen /gb=AK350170 /gi=288780834 /ug=Ssc.79736 /len=2287"	-	-	-	-
gnl|UG|Ssc#S55323237	3	0.86	0	0	4	1.2	"Sus scrofa mRNA, clone:SPL010081D12, expressed in spleen /gb=AK350505 /gi=288781635 /ug=Ssc.24243 /len=3870"	GO:0032991//macromolecular complex;GO:0044444//cytoplasmic part	GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0019899//enzyme binding	GO:0022402//cell cycle process;GO:0051259//protein oligomerization;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0019217//regulation of fatty acid metabolic process	gi|311273198|ref|XP_003133758.1|/0/PREDICTED: calcium-binding protein 39-like [Sus scrofa]
gnl|UG|Ssc#S58312724	4	1.15	0	0	0	0	"PREDICTED: Sus scrofa ring finger protein 44 (RNF44), mRNA /cds=p(202,1500) /gb=XM_003123659 /gi=311249622 /ug=Ssc.33835 /len=1653"	-	GO:0046914//transition metal ion binding	-	gi|311249623|ref|XP_003123707.1|/0/PREDICTED: RING finger protein 44-like [Sus scrofa]
gnl|UG|Ssc#S58304154	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa helicase ARIP4-like (LOC100520639), partial mRNA /cds=p(1,680) /gb=XM_003132244 /gi=311268975 /ug=Ssc.80649 /len=1015"	GO:0043231//intracellular membrane-bounded organelle	GO:0000989//transcription factor binding transcription factor activity;GO:0003676//nucleic acid binding;GO:0017111//nucleoside-triphosphatase activity;GO:0032559;GO:0019900//kinase binding	-	gi|301767248|ref|XP_002919008.1|/1.55495e-117/PREDICTED: helicase ARIP4-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46881251	2	0.58	0	0	0	0	"PREDICTED: Sus scrofa SNF2 histone linker PHD RING helicase (SHPRH), mRNA /cds=p(228,5285) /gb=XM_001924790 /gi=311243823 /ug=Ssc.41092 /len=5361"	GO:0043231//intracellular membrane-bounded organelle;GO:0000785//chromatin	GO:0017111//nucleoside-triphosphatase activity;GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding;GO:0032559	GO:0006259//DNA metabolic process;GO:0034728	gi|311243824|ref|XP_001924825.2|/0/PREDICTED: e3 ubiquitin-protein ligase SHPRH [Sus scrofa]
gnl|UG|Ssc#S20116396	4	1.15	11	3.14	7	2.1	"Sus scrofa calcium/calmodulin-dependent protein kinase II gamma (CAMK2G), mRNA /cds=p(86,1705) /gb=NM_214193 /gi=47523471 /ug=Ssc.47756 /len=1941"	GO:0031981//nuclear lumen;GO:0016020//membrane;GO:0030139//endocytic vesicle;GO:0043234//protein complex	GO:0005515//protein binding;GO:0004674//protein serine/threonine kinase activity;GO:0032559;GO:0004722//protein serine/threonine phosphatase activity	GO:0019221//cytokine-mediated signaling pathway;GO:0006468//protein phosphorylation;GO:0022402//cell cycle process;GO:0070838//divalent metal ion transport;GO:0030072//peptide hormone secretion;GO:0006950//response to stress	gi|47523472|ref|NP_999358.1|/0/calcium/calmodulin-dependent protein kinase type II subunit gamma [Sus scrofa]
gnl|UG|Ssc#S55326991	17	4.89	3	0.86	23	6.91	"Sus scrofa mRNA, clone:OVR010072B08, expressed in ovary /gb=AK347660 /gi=288777835 /ug=Ssc.1381 /len=2679"	GO:0044432//endoplasmic reticulum part	GO:0046872//metal ion binding;GO:0016859//cis-trans isomerase activity;GO:0005527//macrolide binding	GO:0018193//peptidyl-amino acid modification	gi|114051908|ref|NP_001039868.1|/0/peptidyl-prolyl cis-trans isomerase FKBP10 precursor [Bos taurus]
gnl|UG|Ssc#S58313956	7	2.02	23	6.57	13	3.91	"PREDICTED: Sus scrofa double C2-like domain-containing protein gamma-like (LOC100525027), mRNA /cds=p(190,1347) /gb=XM_003122449 /gi=311247115 /ug=Ssc.10586 /len=1347"	GO:0030136//clathrin-coated vesicle;GO:0016020//membrane	GO:0000149//SNARE binding	GO:0016192//vesicle-mediated transport;GO:0050796//regulation of insulin secretion;GO:0007269//neurotransmitter secretion;GO:0033036	gi|311247116|ref|XP_003122497.1|/0/PREDICTED: double C2-like domain-containing protein gamma-like [Sus scrofa]
gnl|UG|Ssc#S55325528	3	0.86	0	0	3	0.9	"Sus scrofa mRNA, clone:PTG010002H11, expressed in pituitary gland /gb=AK349123 /gi=288779298 /ug=Ssc.21231 /len=2341"	-	-	-	gi|301768743|ref|XP_002919780.1|/2.95272e-111/PREDICTED: transmembrane and ubiquitin-like domain-containing protein 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S23213124	12	3.45	3	0.86	8	2.4	"Sus scrofa clone Clu_3792.scr.msk.p1.Contig2, mRNA sequence /gb=AY609884 /gi=52351454 /ug=Ssc.14084 /len=1893"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0005515//protein binding	GO:0000377	gi|301771922|ref|XP_002921381.1|/1.03894e-55/PREDICTED: hypothetical protein LOC100480496 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S46878796	2	0.58	6	1.72	6	1.8	"PREDICTED: Sus scrofa maleylacetoacetate isomerase-like (LOC100157593), mRNA /cds=p(1,753) /gb=XM_001926123 /gi=311261376 /ug=Ssc.19562 /len=2367"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	"GO:0042802//identical protein binding;GO:0016859//cis-trans isomerase activity;GO:0004601//peroxidase activity;GO:0016765//transferase activity, transferring alkyl or aryl (other than methyl) groups"	GO:0006790//sulfur compound metabolic process;GO:0006558//L-phenylalanine metabolic process;GO:0006570//tyrosine metabolic process	gi|311261377|ref|XP_001926158.2|/5.22009e-132/PREDICTED: maleylacetoacetate isomerase-like [Sus scrofa]
gnl|UG|Ssc#S58312556	6	1.73	0	0	2	0.6	"PREDICTED: Sus scrofa probable ATP-dependent RNA helicase YTHDC2-like (LOC100519357), partial mRNA /cds=p(1,3451) /gb=XM_003123845 /gi=311249968 /ug=Ssc.44228 /len=4461"	-	"GO:0042623//ATPase activity, coupled;GO:0032559"	GO:0009207	"gi|311249969|ref|XP_003123893.1|/0/PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S55319623	2	0.58	2	0.57	0	0	"Sus scrofa mRNA, clone:LVRM10124E04, expressed in liver /gb=AK346268 /gi=288785261 /ug=Ssc.3930 /len=4463"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0003909//DNA ligase activity;GO:0046914//transition metal ion binding;GO:0032559	GO:0006266//DNA ligation;GO:0006281//DNA repair;GO:0048232//male gamete generation;GO:0002562	gi|296477017|gb|DAA19132.1|/0/DNA ligase (ATP) 3 [Bos taurus]
gnl|UG|Ssc#S20116644	0	0	2	0.57	0	0	"Sus scrofa SMAD family member 4 (SMAD4), mRNA /cds=p(513,2171) /gb=NM_214072 /gi=47522957 /ug=Ssc.249 /len=3486"	GO:0005667//transcription factor complex;GO:0005815//microtubule organizing center	"GO:0030528//transcription regulator activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0042802//identical protein binding;GO:0043565//sequence-specific DNA binding;GO:0046332//SMAD binding;GO:0005072//transforming growth factor beta receptor, cytoplasmic mediator activity"	GO:0007179//transforming growth factor beta receptor signaling pathway;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0007369//gastrulation;GO:0043009//chordate embryonic development;GO:0010941//regulation of cell death;GO:0072075;GO:0016049//cell growth;GO:0032906;GO:0009895;GO:0001837//epithelial to mesenchymal transition;GO:0001934//positive regulation of protein phosphorylation;GO:0042307//positive regulation of protein import into nucleus;GO:0065009;GO:0048646//anatomical structure formation involved in morphogenesis;GO:0072076//nephrogenic mesenchyme development;GO:0000578//embryonic axis specification;GO:0045165//cell fate commitment;GO:0008283//cell proliferation;GO:0048754//branching morphogenesis of a tube;GO:0003002//regionalization;GO:0006950//response to stress	gi|47522958|ref|NP_999237.1|/0/mothers against decapentaplegic homolog 4 [Sus scrofa]
gnl|UG|Ssc#S58311327	8	2.3	2	0.57	8	2.4	"PREDICTED: Sus scrofa CB1 cannabinoid receptor-interacting protein 1-like (LOC100514955), mRNA /cds=p(332,826) /gb=XM_003125072 /gi=311252488 /ug=Ssc.5171 /len=1629"	-	GO:0005488//binding	-	gi|115495889|ref|NP_001069651.1|/4.38958e-92/CB1 cannabinoid receptor-interacting protein 1 [Bos taurus]
gnl|UG|Ssc#S58310853	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa serine/threonine kinase 3 (STK3), mRNA /cds=p(123,1598) /gb=XM_003125554 /gi=311253564 /ug=Ssc.41272 /len=2805"	GO:0043231//intracellular membrane-bounded organelle	GO:0004672//protein kinase activity;GO:0046872//metal ion binding;GO:0005515//protein binding;GO:0030295//protein kinase activator activity;GO:0032559	GO:0035556//intracellular signal transduction;GO:0006915//apoptosis;GO:0030178//negative regulation of Wnt receptor signaling pathway;GO:0045860//positive regulation of protein kinase activity	gi|311253565|ref|XP_003125602.1|/0/PREDICTED: serine/threonine-protein kinase 3-like [Sus scrofa]
gnl|UG|Ssc#S35167212	120	34.55	39	11.15	140	42.07	"Sus scrofa mRNA, clone:OVRM10200G12, expressed in ovary /gb=AK236532 /gi=115552527 /ug=Ssc.4704 /len=3605"	GO:0031981//nuclear lumen;GO:0044444//cytoplasmic part	GO:0000166//nucleotide binding;GO:0004672//protein kinase activity;GO:0004869//cysteine-type endopeptidase inhibitor activity	GO:0007267//cell-cell signaling;GO:0006796//phosphate metabolic process;GO:0002224//toll-like receptor signaling pathway;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006935//chemotaxis;GO:0007399//nervous system development;GO:0010466//negative regulation of peptidase activity;GO:0000165//MAPKKK cascade	gi|301756270|ref|XP_002913995.1|/0/PREDICTED: ribosomal protein S6 kinase alpha-3-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58313061	30	8.64	16	4.57	27	8.11	"PREDICTED: Sus scrofa UV excision repair protein RAD23 homolog A-like (LOC100524483), mRNA /cds=p(242,1330) /gb=XM_003123338 /gi=311248937 /ug=Ssc.22003 /len=2028"	GO:0044424//intracellular part	GO:0043130//ubiquitin binding;GO:0043566//structure-specific DNA binding	GO:0006281//DNA repair;GO:0061136//regulation of proteasomal protein catabolic process;GO:0045069//regulation of viral genome replication	gi|62089006|dbj|BAD92950.1|/4.78215e-155/UV excision repair protein RAD23 homolog A variant [Homo sapiens]
gnl|UG|Ssc#S58308405	16	4.61	0	0	10	3.01	"PREDICTED: Sus scrofa coiled-coil and C2 domain containing 1B (CC2D1B), mRNA /cds=p(148,2730) /gb=XM_003128009 /gi=311259317 /ug=Ssc.9408 /len=4064"	-	-	-	gi|311259318|ref|XP_003128057.1|/0/PREDICTED: coiled-coil and C2 domain-containing protein 1B-like [Sus scrofa]
gnl|UG|Ssc#S35170074	2	0.58	2	0.57	5	1.5	"Sus scrofa mRNA, clone:LNG010069E12, expressed in lung /gb=AK232044 /gi=115549765 /ug=Ssc.95417 /len=996"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	-	gi|311270048|ref|XP_003132743.1|/1.3973e-86/PREDICTED: zinc finger and BTB domain-containing protein 11-like [Sus scrofa]
gnl|UG|Ssc#S58305576	26	7.49	10	2.86	25	7.51	"PREDICTED: Sus scrofa RNA binding motif protein 17 (RBM17), mRNA /cds=p(137,1345) /gb=XM_003130822 /gi=311265881 /ug=Ssc.13395 /len=2063"	GO:0043231//intracellular membrane-bounded organelle;GO:0030529//ribonucleoprotein complex	GO:0003676//nucleic acid binding	GO:0008380//RNA splicing	gi|311265882|ref|XP_003130870.1|/0/PREDICTED: splicing factor 45-like [Sus scrofa]
gnl|UG|Ssc#S46875942	8	2.3	8	2.29	2	0.6	"PREDICTED: Sus scrofa erythrocyte membrane protein band 4.1-like 1 (EPB41L1), mRNA /cds=p(1,2751) /gb=XM_001924835 /gi=311274792 /ug=Ssc.5631 /len=4095"	GO:0043232;GO:0044444//cytoplasmic part;GO:0044425//membrane part	GO:0008092//cytoskeletal protein binding	GO:0007267//cell-cell signaling;GO:0030036//actin cytoskeleton organization	gi|311274793|ref|XP_001924870.2|/0/PREDICTED: erythrocyte membrane protein band 4.1-like 1 [Sus scrofa]
gnl|UG|Ssc#S18555078	5	1.44	3	0.86	3	0.9	"BX923729 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0013.h.03 5prim, mRNA sequence /clone=scan0013.h.03 /clone_end=5' /gb=BX923729 /gi=90229288 /ug=Ssc.11227 /len=894"	GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0005488//binding	GO:0006468//protein phosphorylation	gi|114668923|ref|XP_001160873.1|/2.29756e-74/PREDICTED: folliculin isoform 1 [Pan troglodytes]
gnl|UG|Ssc#S35166618	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:THY010124H07, expressed in thymus /gb=AK239707 /gi=115553121 /ug=Ssc.82894 /len=2994"	-	-	-	-
gnl|UG|Ssc#S18381748	0	0	2	0.57	0	0	"932621 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK461864 /gi=40833145 /ug=Ssc.15489 /len=883"	-	-	-	-
gnl|UG|Ssc#S58313783	7	2.02	6	1.72	7	2.1	"PREDICTED: Sus scrofa neuroblast differentiation-associated protein AHNAK-like (LOC100515598), mRNA /cds=p(109,9144) /gb=XM_003122620 /gi=311247478 /ug=Ssc.38420 /len=9144"	-	GO:0005488//binding	-	gi|311247479|ref|XP_003122668.1|/0/PREDICTED: neuroblast differentiation-associated protein AHNAK-like [Sus scrofa]
gnl|UG|Ssc#S58311782	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa chitobiosyldiphosphodolichol beta-mannosyltransferase-like (LOC100524193), partial mRNA /cds=p(1,1347) /gb=XM_003124621 /gi=311251553 /ug=Ssc.33450 /len=1347"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane	"GO:0019187//beta-1,4-mannosyltransferase activity"	GO:0008610//lipid biosynthetic process;GO:0006487//protein N-linked glycosylation	"gi|311251554|ref|XP_003124669.1|/0/PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase-like, partial [Sus scrofa]"
gnl|UG|Ssc#S23213425	46	13.24	19	5.43	51	15.33	"Sus scrofa clone Clu_171269.scr.msk.p1.Contig1, mRNA sequence /gb=AY609552 /gi=52351147 /ug=Ssc.2992 /len=1702"	-	-	-	-
gnl|UG|Ssc#S20116691	2	0.58	0	0	7	2.1	"Sus scrofa myosin VI (MYO6), mRNA /cds=p(103,3867) /gb=NM_214021 /gi=47522863 /ug=Ssc.94 /len=4606"	GO:0031981//nuclear lumen;GO:0005884//actin filament;GO:0031252//cell leading edge;GO:0030139//endocytic vesicle;GO:0005635//nuclear envelope	GO:0017111//nucleoside-triphosphatase activity;GO:0003779//actin binding;GO:0032559	GO:0030029//actin filament-based process;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0042770//signal transduction in response to DNA damage;GO:0051049//regulation of transport;GO:0015031//protein transport;GO:0050954//sensory perception of mechanical stimulus;GO:0016192//vesicle-mediated transport	gi|47522864|ref|NP_999186.1|/0/myosin-VI [Sus scrofa]
gnl|UG|Ssc#S58303737	0	0	0	0	0	0	"PREDICTED: Sus scrofa Rho GTPase activating protein 31 (ARHGAP31), mRNA /cds=p(1,4305) /gb=XM_003132660 /gi=311269965 /ug=Ssc.94334 /len=5576"	GO:0031252//cell leading edge;GO:0005924//cell-substrate adherens junction;GO:0044444//cytoplasmic part	GO:0008047//enzyme activator activity;GO:0019904//protein domain specific binding	GO:0035556//intracellular signal transduction;GO:0043087//regulation of GTPase activity;GO:0009966//regulation of signal transduction	gi|311269966|ref|XP_003132708.1|/0/PREDICTED: rho GTPase-activating protein 31-like [Sus scrofa]
gnl|UG|Ssc#S40156343	0	0	4	1.14	7	2.1	"rhyp32c_h8.y1 hyp Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW251250 /gi=182508526 /ug=Ssc.83607 /len=448"	-	-	-	-
gnl|UG|Ssc#S58309283	16	4.61	0	0	5	1.5	"PREDICTED: Sus scrofa mitogen-activated protein kinase kinase kinase kinase 1 (MAP4K1), mRNA /cds=p(62,2524) /gb=XM_003127115 /gi=311257522 /ug=Ssc.18137 /len=2617"	-	GO:0030695//GTPase regulator activity;GO:0032559;GO:0004702//receptor signaling protein serine/threonine kinase activity	GO:0000187//activation of MAPK activity	gi|311257523|ref|XP_003127163.1|/0/PREDICTED: mitogen-activated protein kinase kinase kinase kinase 1-like [Sus scrofa]
gnl|UG|Ssc#S21575938	0	0	0	0	3	0.9	"UMC-pd3end3-008-d05 Endometrium gilt D3 of estrous cycle pd3end Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO988898 /gi=51348172 /ug=Ssc.86571 /len=377"	-	-	-	-
gnl|UG|Ssc#S58313718	0	0	0	0	0	0	"PREDICTED: Sus scrofa 39S ribosomal protein L16, mitochondrial-like (LOC100514446), mRNA /cds=p(116,871) /gb=XM_003122683 /gi=311247610 /ug=Ssc.2526 /len=1304"	GO:0000315//organellar large ribosomal subunit;GO:0043231//intracellular membrane-bounded organelle	GO:0003723//RNA binding;GO:0005198//structural molecule activity	GO:0010467//gene expression	"gi|311247611|ref|XP_003122731.1|/1.31692e-125/PREDICTED: 39S ribosomal protein L16, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58301596	2	0.58	0	0	2	0.6	"PREDICTED: Sus scrofa Bardet-Biedl syndrome 9 (BBS9), mRNA /cds=p(1,2160) /gb=XM_003134800 /gi=311275655 /ug=Ssc.3254 /len=2648"	-	-	-	-
gnl|UG|Ssc#S58310008	645	185.7	1298	371.03	875	262.96	"PREDICTED: Sus scrofa nucleosome assembly protein 1-like 1-like (LOC100524086), mRNA /cds=p(161,1336) /gb=XM_003126390 /gi=311255957 /ug=Ssc.14238 /len=3152"	-	GO:0005488//binding	GO:0009987//cellular process	gi|67970718|dbj|BAE01701.1|/7.43882e-122/unnamed protein product [Macaca fascicularis]
gnl|UG|Ssc#S55326890	0	0	0	0	0	0	"Sus scrofa mRNA, clone:OVR010091E04, expressed in ovary /gb=AK347761 /gi=288777936 /ug=Ssc.90618 /len=1929"	GO:0044429//mitochondrial part	GO:0016881//acid-amino acid ligase activity;GO:0032559	GO:0050896//response to stimulus;GO:0007417//central nervous system development;GO:0006575//cellular modified amino acid metabolic process;GO:0006766//vitamin metabolic process;GO:0009887//organ morphogenesis;GO:0006760//folic acid-containing compound metabolic process	"gi|301758741|ref|XP_002915221.1|/0/PREDICTED: folylpolyglutamate synthase, mitochondrial-like [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S18387057	7	2.02	0	0	16	4.81	"938450 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK467170 /gi=40838447 /ug=Ssc.8208 /len=854"	-	-	-	-
gnl|UG|Ssc#S58313495	7	2.02	9	2.57	27	8.11	"PREDICTED: Sus scrofa leucine-rich repeat-containing G protein-coupled receptor 4 (LGR4), mRNA /cds=p(528,3383) /gb=XM_003122906 /gi=311248058 /ug=Ssc.5038 /len=5121"	GO:0031224//intrinsic to membrane	GO:0004930//G-protein coupled receptor activity	GO:0046546//development of primary male sexual characteristics;GO:0008283//cell proliferation;GO:0007166//cell surface receptor linked signaling pathway;GO:0009653//anatomical structure morphogenesis	gi|311248059|ref|XP_003122954.1|/0/PREDICTED: leucine-rich repeat-containing G-protein coupled receptor 4-like [Sus scrofa]
gnl|UG|Ssc#S55320148	17	4.89	7	2	20	6.01	"Sus scrofa mRNA, clone:LVR010065A10, expressed in liver /gb=AK345942 /gi=288784724 /ug=Ssc.22598 /len=2129"	GO:0034399//nuclear periphery	GO:0046872//metal ion binding;GO:0019899//enzyme binding	-	gi|311249167|ref|XP_003123480.1|/0/PREDICTED: a-kinase anchor protein 8-like [Sus scrofa]
gnl|UG|Ssc#S46878783	125	35.99	180	51.45	46	13.82	"PREDICTED: Sus scrofa COMM domain containing 4 (COMMD4), mRNA /cds=p(56,655) /gb=XM_001924389 /gi=311260768 /ug=Ssc.3361 /len=902"	-	-	-	-
gnl|UG|Ssc#S55324698	8	2.3	3	0.86	15	4.51	"Sus scrofa mRNA, clone:ADR010048E12, expressed in adrenal gland /gb=AK343358 /gi=288780174 /ug=Ssc.53958 /len=1514"	GO:0031224//intrinsic to membrane	-	-	gi|109072529|ref|XP_001092577.1|/6.85836e-93/PREDICTED: androgen-induced gene 1 protein isoform 4 [Macaca mulatta]
gnl|UG|Ssc#S35169482	1494	430.13	2512	718.05	1403	421.64	"Sus scrofa mRNA, clone:THY010007G02, expressed in thymus /gb=AK238622 /gi=115550357 /ug=Ssc.3162 /len=2528"	-	-	-	-
gnl|UG|Ssc#S14894967	2	0.58	0	0	0	0	"jns19bA10.f jns Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CB477237 /gi=29283623 /ug=Ssc.82736 /len=588"	-	-	-	gi|114639220|ref|XP_001160542.1|/6.87646e-15/PREDICTED: hypothetical protein [Pan troglodytes]
gnl|UG|Ssc#S58304497	108	31.09	34	9.72	52	15.63	"PREDICTED: Sus scrofa kinesin family member 1C (KIF1C), mRNA /cds=p(1,3312) /gb=XM_003131898 /gi=311268218 /ug=Ssc.56217 /len=3851"	GO:0005875//microtubule associated complex;GO:0043231//intracellular membrane-bounded organelle	GO:0003774//motor activity;GO:0032559	GO:0048193//Golgi vesicle transport;GO:0007017//microtubule-based process	gi|311268219|ref|XP_003131946.1|/0/PREDICTED: kinesin-like protein KIF1C-like [Sus scrofa]
gnl|UG|Ssc#S35164048	20	5.76	8	2.29	25	7.51	"Sus scrofa mRNA, clone:SPL010023A12, expressed in spleen /gb=AK237311 /gi=115555678 /ug=Ssc.22548 /len=2203"	GO:0005875//microtubule associated complex	-	GO:0031023//microtubule organizing center organization;GO:0007051//spindle organization;GO:0000087//M phase of mitotic cell cycle	gi|149756946|ref|XP_001489161.1|/0/PREDICTED: hypothetical protein [Equus caballus]
gnl|UG|Ssc#S58309778	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa twinfilin-1-like (LOC100523377), mRNA /cds=p(1,1155) /gb=XM_003126619 /gi=311256473 /ug=Ssc.7177 /len=3177"	GO:0005856//cytoskeleton	GO:0008092//cytoskeletal protein binding;GO:0004672//protein kinase activity	GO:0006464//protein modification process	gi|311256474|ref|XP_003126667.1|/0/PREDICTED: LOW QUALITY PROTEIN: twinfilin-1-like [Sus scrofa]
gnl|UG|Ssc#S58311199	196	56.43	323	92.33	178	53.49	"PREDICTED: Sus scrofa echinoderm microtubule associated protein like 4 (EML4), mRNA /cds=p(232,3177) /gb=XM_003125196 /gi=311252752 /ug=Ssc.926 /len=5481"	GO:0015630//microtubule cytoskeleton	GO:0005488//binding	GO:0000087//M phase of mitotic cell cycle	gi|311252753|ref|XP_003125244.1|/0/PREDICTED: echinoderm microtubule-associated protein-like 4-like [Sus scrofa]
gnl|UG|Ssc#S55319364	0	0	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10142B07, expressed in liver /gb=AK346328 /gi=288785520 /ug=Ssc.27002 /len=2923"	-	GO:0046872//metal ion binding;GO:0004866//endopeptidase inhibitor activity	GO:0010466//negative regulation of peptidase activity;GO:0001775//cell activation;GO:0030203//glycosaminoglycan metabolic process	gi|47522638|ref|NP_999089.1|/0/inter-alpha-trypsin inhibitor heavy chain H1 precursor [Sus scrofa]
gnl|UG|Ssc#S35169972	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:TES010054E11, expressed in testis /gb=AK238527 /gi=115549867 /ug=Ssc.54692 /len=1593"	GO:0044424//intracellular part	GO:0017111//nucleoside-triphosphatase activity;GO:0005083//small GTPase regulator activity;GO:0008047//enzyme activator activity;GO:0046914//transition metal ion binding;GO:0032561	GO:0043087//regulation of GTPase activity;GO:0032012//regulation of ARF protein signal transduction	"gi|194210144|ref|XP_001495190.2|/0/PREDICTED: centaurin, gamma 3 [Equus caballus]"
gnl|UG|Ssc#S50210395	9	2.59	2	0.57	2	0.6	"susfleck_AF_N_10_D05 SUSFLECK Abdominal Fat Normalized Sus scrofa cDNA clone 10_D05, mRNA sequence /clone=10_D05 /gb=FD642231 /gi=220992537 /ug=Ssc.93097 /len=680"	GO:0031981//nuclear lumen;GO:0033256//I-kappaB/NF-kappaB complex;GO:0044444//cytoplasmic part	GO:0005488//binding;GO:0003712//transcription cofactor activity	GO:0043062//extracellular structure organization;GO:0051091//positive regulation of transcription factor activity;GO:0002224//toll-like receptor signaling pathway;GO:0002266;GO:0048534;GO:0007166//cell surface receptor linked signaling pathway;GO:0002460//adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	gi|156120849|ref|NP_001095571.1|/1.33073e-85/nuclear factor NF-kappa-B p100 subunit [Bos taurus]
gnl|UG|Ssc#S58301955	158	45.49	245	70.03	75	22.54	"PREDICTED: Sus scrofa DNA topoisomerase 1-like (LOC100518587), mRNA /cds=p(1,3141) /gb=XM_003134441 /gi=311274867 /ug=Ssc.7575 /len=4333"	GO:0031981//nuclear lumen;GO:0043025//neuronal cell body;GO:0005694//chromosome	GO:0003916//DNA topoisomerase activity;GO:0003682//chromatin binding;GO:0032559	GO:0008219//cell death;GO:0006796//phosphate metabolic process;GO:0051704;GO:0006261//DNA-dependent DNA replication;GO:0042221//response to chemical stimulus;GO:0009790//embryo development	gi|311274868|ref|XP_003134489.1|/0/PREDICTED: DNA topoisomerase 1-like [Sus scrofa]
gnl|UG|Ssc#S55320415	49	14.11	129	36.87	52	15.63	"Sus scrofa mRNA, clone:LVR010041A04, expressed in liver /gb=AK345873 /gi=288784457 /ug=Ssc.33496 /len=3018"	GO:0005856//cytoskeleton;GO:0031252//cell leading edge;GO:0044444//cytoplasmic part	GO:0008092//cytoskeletal protein binding;GO:0046872//metal ion binding	GO:0006810//transport;GO:0048858//cell projection morphogenesis;GO:0006915//apoptosis;GO:0051693//actin filament capping	gi|121118|sp|P20305.1|GELS_PIG/0/RecName: Full=Gelsolin; AltName: Full=Actin-depolymerizing factor; Short=ADF; AltName: Full=Brevin; Flags: Precursor
gnl|UG|Ssc#S35169838	18	5.18	19	5.43	30	9.02	"Sus scrofa mRNA, clone:LNG010110G08, expressed in lung /gb=AK232236 /gi=115550001 /ug=Ssc.54452 /len=1333"	GO:0031224//intrinsic to membrane	-	-	gi|157074200|ref|NP_001096814.1|/9.97355e-161/ubiquitin-associated domain-containing protein 2 [Bos taurus]
gnl|UG|Ssc#S55323564	22	6.33	14	4	13	3.91	"Sus scrofa mRNA, clone:AMP010082C07, expressed in alveolar macrophages /gb=AK343917 /gi=288781308 /ug=Ssc.8577 /len=2462"	-	-	-	gi|114683663|ref|XP_525432.2|/1.48226e-44/PREDICTED: hypothetical protein [Pan troglodytes]
gnl|UG|Ssc#S52535148	0	0	0	0	2	0.6	"Sus scrofa lipin 1 mRNA, complete cds /cds=p(112,2796) /gb=EU164847 /gi=159792923 /ug=Ssc.1942 /len=5559"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex;GO:0031090//organelle membrane;GO:0044444//cytoplasmic part	GO:0005102//receptor binding;GO:0003712//transcription cofactor activity;GO:0016791//phosphatase activity;GO:0019899//enzyme binding	GO:0032868//response to insulin stimulus;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0016575//histone deacetylation;GO:0030036//actin cytoskeleton organization;GO:0006631//fatty acid metabolic process;GO:0030030//cell projection organization;GO:0045595//regulation of cell differentiation;GO:0009887//organ morphogenesis;GO:0006641//triglyceride metabolic process	gi|159792924|gb|ABW98682.1|/0/lipin 1 [Sus scrofa]
gnl|UG|Ssc#S20939269	108	31.09	43	12.29	129	38.77	"AJ650992 CSEQRAN19 Sus scrofa cDNA clone C0003276_O15, mRNA sequence /clone=C0003276_O15 /gb=AJ650992 /gi=49327837 /ug=Ssc.74064 /len=543"	GO:0044432//endoplasmic reticulum part;GO:0048770	GO:0016859//cis-trans isomerase activity;GO:0005515//protein binding	GO:0046907//intracellular transport;GO:0044267//cellular protein metabolic process	gi|215274190|sp|P24368.3|PPIB_RAT/3.60085e-86/RecName: Full=Peptidyl-prolyl cis-trans isomerase B; Short=PPIase B; AltName: Full=CYP-S1; AltName: Full=Cyclophilin B; AltName: Full=Rotamase B; AltName: Full=S-cyclophilin; Short=SCYLP; Flags: Precursor
gnl|UG|Ssc#S35165880	2	0.58	4	1.14	0	0	"Sus scrofa mRNA, clone:PBL010024F07, expressed in periphral blood mononuclear cell /gb=AK236851 /gi=115553846 /ug=Ssc.2833 /len=1179"	-	-	-	gi|212286165|ref|NP_001131075.1|/3.60951e-71/selenoprotein O [Canis lupus familiaris]
gnl|UG|Ssc#S29986863	0	0	0	0	0	0	"PDUts2056A03 Porcine testis cDNA library II Sus scrofa cDNA clone PDUts2056A03 5' similar to homologue to ref|NM_022778.2| Homo sapiens hypothetical protein DKFZp434L0117 (DKFZP434L0117), mRNA, mRNA sequence /clone=PDUts2056A03 /clone_end=5' /gb=CX061339 /gi=84137481 /ug=Ssc.88781 /len=715"	-	-	-	gi|119888764|ref|XP_595692.3|/7.35481e-101/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S19541038	0	0	8	2.29	3	0.9	"945810 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CN157134 /gi=46171564 /ug=Ssc.32856 /len=714"	-	-	-	-
gnl|UG|Ssc#S46880939	2	0.58	7	2	11	3.31	"PREDICTED: Sus scrofa protein RIC1 homolog, transcript variant 1 (LOC100154060), mRNA /cds=p(1,4266) /gb=XM_001924914 /gi=311245804 /ug=Ssc.93949 /len=4266"	GO:0031224//intrinsic to membrane	-	-	gi|311245805|ref|XP_001924949.2|/0/PREDICTED: protein RIC1 homolog isoform 1 [Sus scrofa]
gnl|UG|Ssc#S20116808	484	139.35	132	37.73	413	124.12	"Sus scrofa glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (GOT2), nuclear gene encoding mitochondrial protein, mRNA /cds=p(26,1318) /gb=NM_213928 /gi=47522629 /ug=Ssc.3588 /len=2533"	GO:0032991//macromolecular complex;GO:0019866//organelle inner membrane;GO:0044429//mitochondrial part;GO:0043025//neuronal cell body	GO:0008483//transaminase activity;GO:0042802//identical protein binding;GO:0008289//lipid binding;GO:0031406//carboxylic acid binding;GO:0048037//cofactor binding	GO:0006103//2-oxoglutarate metabolic process;GO:0009064//glutamine family amino acid metabolic process;GO:0006869//lipid transport;GO:0006006//glucose metabolic process;GO:0006531//aspartate metabolic process;GO:0010033//response to organic substance	"gi|47522630|ref|NP_999093.1|/0/aspartate aminotransferase, mitochondrial [Sus scrofa]"
gnl|UG|Ssc#S58301611	5	1.44	0	0	4	1.2	"PREDICTED: Sus scrofa actin-binding protein anillin-like (LOC100523340), mRNA /cds=p(168,3458) /gb=XM_003134787 /gi=311275625 /ug=Ssc.7621 /len=4680"	GO:0043231//intracellular membrane-bounded organelle;GO:0015629//actin cytoskeleton;GO:0044444//cytoplasmic part	GO:0008092//cytoskeletal protein binding	GO:0031106//septin ring organization;GO:0000087//M phase of mitotic cell cycle;GO:0007346//regulation of mitotic cell cycle	gi|311275626|ref|XP_003134835.1|/0/PREDICTED: LOW QUALITY PROTEIN: actin-binding protein anillin-like [Sus scrofa]
gnl|UG|Ssc#S58305453	7	2.02	0	0	4	1.2	"PREDICTED: Sus scrofa vacuolar protein sorting 36 homolog (S. cerevisiae) (VPS36), mRNA /cds=p(77,1237) /gb=XM_003130947 /gi=311266180 /ug=Ssc.11728 /len=1879"	GO:0000323//lytic vacuole;GO:0005768//endosome	GO:0032182//small conjugating protein binding	"GO:0016192//vesicle-mediated transport;GO:0006351//transcription, DNA-dependent"	gi|311266181|ref|XP_003130995.1|/0/PREDICTED: vacuolar protein-sorting-associated protein 36-like [Sus scrofa]
gnl|UG|Ssc#S58306024	20	5.76	15	4.29	35	10.52	"PREDICTED: Sus scrofa uncharacterized protein C1orf21-like, transcript variant 1 (LOC100516567), mRNA /cds=p(436,801) /gb=XM_003130374 /gi=311264964 /ug=Ssc.12715 /len=1573"	-	-	-	gi|125630729|ref|NP_001075016.1|/2.39923e-63/chromosome 1 open reading frame 21 [Bos taurus]
gnl|UG|Ssc#S58305640	0	0	0	0	0	0	"PREDICTED: Sus scrofa microtubule associated serine/threonine kinase-like, transcript variant 1 (MASTL), mRNA /cds=p(1,2631) /gb=XM_003130755 /gi=311265752 /ug=Ssc.90994 /len=2696"	GO:0005815//microtubule organizing center;GO:0043231//intracellular membrane-bounded organelle;GO:0032155	GO:0004672//protein kinase activity;GO:0019903//protein phosphatase binding;GO:0032559	GO:0032515//negative regulation of phosphoprotein phosphatase activity;GO:0033554//cellular response to stress;GO:0000087//M phase of mitotic cell cycle;GO:0006464//protein modification process	gi|311265753|ref|XP_003130803.1|/0/PREDICTED: microtubule-associated serine/threonine-protein kinase-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S23694762	5	1.44	15	4.29	14	4.21	"1102195 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN105865 /gi=59781128 /ug=Ssc.25344 /len=839"	-	-	-	-
gnl|UG|Ssc#S35165977	25	7.2	6	1.72	33	9.92	"Sus scrofa mRNA, clone:UTR010013C05, expressed in uterus /gb=AK239936 /gi=115553749 /ug=Ssc.1210 /len=1905"	-	-	-	-
gnl|UG|Ssc#S46880486	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa SAFB-like, transcription modulator (SLTM), mRNA /cds=p(1,2334) /gb=XM_001928873 /gi=311244658 /ug=Ssc.50854 /len=2334"	-	-	-	"gi|311244659|ref|XP_001928908.2|/0/PREDICTED: SAFB-like, transcription modulator [Sus scrofa]"
gnl|UG|Ssc#S58314646	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa coronin, actin binding protein, 2B (CORO2B), mRNA /cds=p(237,1679) /gb=XM_003121757 /gi=311245369 /ug=Ssc.50370 /len=1679"	GO:0005856//cytoskeleton	GO:0003779//actin binding	GO:0007010//cytoskeleton organization	gi|311245370|ref|XP_003121805.1|/0/PREDICTED: coronin-2B-like [Sus scrofa]
gnl|UG|Ssc#S46876181	63	18.14	32	9.15	59	17.73	"PREDICTED: Sus scrofa splicing factor 3b, subunit 1, 155kDa (SF3B1), mRNA /cds=p(56,3970) /gb=XM_001928794 /gi=194044034 /ug=Ssc.3000 /len=4942"	-	-	-	-
gnl|UG|Ssc#S46877282	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa sorbin and SH3 domain containing 1 (SORBS1), mRNA /cds=p(1,3861) /gb=XM_001924661 /gi=311271671 /ug=Ssc.1534 /len=7143"	-	-	-	gi|311271672|ref|XP_001924696.2|/0/PREDICTED: sorbin and SH3 domain-containing protein 1 [Sus scrofa]
gnl|UG|Ssc#S20458814	2	0.58	0	0	0	0	"UMC-pgvo4-011-f08 Germinal-Vesicle-Oocyte pgvo Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN032548 /gi=48727084 /ug=Ssc.54150 /len=411"	-	-	-	gi|301764855|ref|XP_002917850.1|/6.62009e-56/PREDICTED: formin-1-like isoform 2 [Ailuropoda melanoleuca]
gnl|UG|Ssc#S55273931	0	0	0	0	2	0.6	"FS670165 full-length enriched swine cDNA library, adult hypothalamus Sus scrofa cDNA clone HTMT10085B12 5', mRNA sequence /clone=HTMT10085B12 /clone_end=5' /gb=FS670165 /gi=288269791 /ug=Ssc.82874 /len=755"	-	-	-	"gi|301772454|ref|XP_002921654.1|/4.46851e-83/PREDICTED: UPF0670 protein C8orf55 homolog, partial [Ailuropoda melanoleuca]"
gnl|UG|Ssc#S46880924	20	5.76	11	3.14	26	7.81	"PREDICTED: Sus scrofa SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 (LOC100157302), mRNA /cds=p(133,4680) /gb=XM_001925915 /gi=311245834 /ug=Ssc.1339 /len=5573"	GO:0031981//nuclear lumen;GO:0070603//SWI/SNF-type complex;GO:0005856//cytoskeleton	"GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0003676//nucleic acid binding;GO:0032559;GO:0042623//ATPase activity, coupled"	GO:0048731;GO:0000122//negative regulation of transcription from RNA polymerase II promoter;GO:0008283//cell proliferation;GO:0034728;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0016568//chromatin modification	gi|311245835|ref|XP_001925950.2|/0/PREDICTED: probable global transcription activator SNF2L2 [Sus scrofa]
gnl|UG|Ssc#S55326412	12	3.45	4	1.14	7	2.1	"Sus scrofa mRNA, clone:OVRM10104D10, expressed in ovary /gb=AK348239 /gi=288778414 /ug=Ssc.43597 /len=3305"	-	-	-	gi|311268889|ref|XP_003132250.1|/0/PREDICTED: glutamine-rich protein 1-like [Sus scrofa]
gnl|UG|Ssc#S58309169	35	10.08	4	1.14	4	1.2	"PREDICTED: Sus scrofa symplekin (SYMPK), mRNA /cds=p(1,3816) /gb=XM_003127230 /gi=311257754 /ug=Ssc.12130 /len=3816"	GO:0043296//apical junction complex;GO:0043232;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0006396//RNA processing	gi|311257755|ref|XP_003127278.1|/0/PREDICTED: symplekin-like [Sus scrofa]
gnl|UG|Ssc#S40439791	7	2.02	10	2.86	10	3.01	"rret17_b16.y1 ret Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW534397 /gi=183126986 /ug=Ssc.21540 /len=650"	-	-	-	-
gnl|UG|Ssc#S55327623	0	0	0	0	0	0	"Sus scrofa acyl-CoA synthetase long-chain family member 1 (ACSL1), mRNA /cds=p(73,2172) /gb=NM_001167629 /gi=309243087 /ug=Ssc.1735 /len=3133"	GO:0031224//intrinsic to membrane;GO:0031966//mitochondrial membrane;GO:0044439;GO:0042598//vesicular fraction	GO:0015645//fatty acid ligase activity;GO:0032559	GO:0035336//long-chain fatty-acyl-CoA metabolic process;GO:0006641//triglyceride metabolic process;GO:0032501//multicellular organismal process;GO:0019217//regulation of fatty acid metabolic process	gi|309243088|ref|NP_001161101.2|/0/long-chain-fatty-acid--CoA ligase 1 [Sus scrofa]
gnl|UG|Ssc#S58304178	72	20.73	37	10.58	49	14.73	"PREDICTED: Sus scrofa RNA binding motif protein 6 (RBM6), mRNA /cds=p(1,1797) /gb=XM_003132220 /gi=311268922 /ug=Ssc.6914 /len=2593"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|311268923|ref|XP_003132268.1|/0/PREDICTED: RNA-binding protein 6-like [Sus scrofa]
gnl|UG|Ssc#S58302643	0	0	2	0.57	3	0.9	"PREDICTED: Sus scrofa hypothetical protein LOC100514255 (LOC100514255), mRNA /cds=p(1,1230) /gb=XM_003133753 /gi=311273297 /ug=Ssc.3445 /len=4157"	GO:0043231//intracellular membrane-bounded organelle;GO:0042995//cell projection;GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0015631//tubulin binding	GO:0035556//intracellular signal transduction;GO:0009207;GO:0016197//endosome transport	gi|311273298|ref|XP_003133801.1|/6.56677e-136/PREDICTED: hypothetical protein LOC100514255 [Sus scrofa]
gnl|UG|Ssc#S58313915	20	5.76	15	4.29	32	9.62	"PREDICTED: Sus scrofa n-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase-like (LOC100518412), mRNA /cds=p(105,1352) /gb=XM_003122486 /gi=311247199 /ug=Ssc.2503 /len=2038"	GO:0031228//intrinsic to Golgi membrane	GO:0008375//acetylglucosaminyltransferase activity	GO:0006023	"gi|73983637|ref|XP_533222.2|/0/PREDICTED: similar to N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (Poly-N-acetyllactosamine extension enzyme) (I-beta-1,3-N-acetylglucosaminyltransferase) (iGnT) (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6)... [Canis familiaris]"
gnl|UG|Ssc#S58305951	3	0.86	0	0	4	1.2	"PREDICTED: Sus scrofa protein FAM72A-like (LOC100518089), mRNA /cds=p(49,498) /gb=XM_003130446 /gi=311265113 /ug=Ssc.21217 /len=1442"	-	-	-	gi|311265114|ref|XP_003130494.1|/4.01319e-86/PREDICTED: protein FAM72A-like [Sus scrofa]
gnl|UG|Ssc#S35171541	49	14.11	120	34.3	24	7.21	"Sus scrofa mRNA, clone:OVRM10035H11, expressed in ovary /gb=AK234955 /gi=115548298 /ug=Ssc.27287 /len=1697"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0046983//protein dimerization activity	"GO:0045595//regulation of cell differentiation;GO:0006355//regulation of transcription, DNA-dependent;GO:0043009//chordate embryonic development;GO:0007599//hemostasis;GO:0007610//behavior;GO:0008283//cell proliferation;GO:0006885//regulation of pH"	"gi|73964730|ref|XP_849862.1|/9.03613e-72/PREDICTED: similar to v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G [Canis familiaris]"
gnl|UG|Ssc#S58306511	5	1.44	0	0	2	0.6	"PREDICTED: Sus scrofa SID1 transmembrane family, member 2 (SIDT2), mRNA /cds=p(391,2898) /gb=XM_003129880 /gi=311263967 /ug=Ssc.812 /len=4294"	GO:0005764//lysosome;GO:0031224//intrinsic to membrane	-	-	gi|311263968|ref|XP_003129928.1|/0/PREDICTED: SID1 transmembrane family member 2-like [Sus scrofa]
gnl|UG|Ssc#S46876438	10	2.88	57	16.29	17	5.11	"PREDICTED: Sus scrofa heart- and neural crest derivatives-expressed protein 2-like (LOC100153751), mRNA /cds=p(1,498) /gb=XM_001926803 /gi=194043500 /ug=Ssc.25585 /len=1175"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	GO:0030528//transcription regulator activity;GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0046983//protein dimerization activity;GO:0042802//identical protein binding;GO:0010843//promoter binding;GO:0008134//transcription factor binding	GO:0035051//cardiac cell differentiation;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0012501//programmed cell death;GO:0043009//chordate embryonic development;GO:0014031//mesenchymal cell development;GO:0003143//embryonic heart tube morphogenesis	gi|194043501|ref|XP_001926838.1|/5.56022e-64/PREDICTED: heart- and neural crest derivatives-expressed protein 2-like [Sus scrofa]
gnl|UG|Ssc#S58302845	0	0	0	0	7	2.1	"PREDICTED: Sus scrofa myosin IB (MYO1B), mRNA /cds=p(1,3162) /gb=XM_003133553 /gi=311272808 /ug=Ssc.12452 /len=4582"	GO:0015629//actin cytoskeleton;GO:0042995//cell projection	GO:0008092//cytoskeletal protein binding;GO:0017111//nucleoside-triphosphatase activity;GO:0032559	GO:0048731	gi|311272809|ref|XP_003133601.1|/0/PREDICTED: myosin-Ib-like [Sus scrofa]
gnl|UG|Ssc#S35169997	2	0.58	2	0.57	6	1.8	"Sus scrofa mRNA, clone:TES010044C06, expressed in testis /gb=AK238502 /gi=115549842 /ug=Ssc.3848 /len=1477"	-	"GO:0016811//hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"	GO:0006041//glucosamine metabolic process	gi|311251863|ref|XP_003124791.1|/0/PREDICTED: putative N-acetylglucosamine-6-phosphate deacetylase-like [Sus scrofa]
gnl|UG|Ssc#S58306373	0	0	4	1.14	0	0	"PREDICTED: Sus scrofa sialic acid acetylesterase (SIAE), mRNA /cds=p(52,1644) /gb=XM_003130021 /gi=311264247 /ug=Ssc.61082 /len=2842"	GO:0000323//lytic vacuole	GO:0008126//acetylesterase activity	-	gi|311264248|ref|XP_003130069.1|/0/PREDICTED: sialate O-acetylesterase-like [Sus scrofa]
gnl|UG|Ssc#S46878891	57	16.41	36	10.29	47	14.12	"PREDICTED: Sus scrofa zinc finger and BTB domain containing 1 (ZBTB1), mRNA /cds=p(1,2142) /gb=XM_001925789 /gi=311261223 /ug=Ssc.49183 /len=3187"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|194038417|ref|XP_001925824.1|/0/PREDICTED: zinc finger and BTB domain-containing protein 1 [Sus scrofa]
gnl|UG|Ssc#S18387712	2	0.58	0	0	4	1.2	"939165 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK467825 /gi=40839102 /ug=Ssc.25020 /len=865"	GO:0000228//nuclear chromosome	GO:0032559	"GO:0009048//dosage compensation, by inactivation of X chromosome;GO:0006996//organelle organization"	gi|297702318|ref|XP_002828131.1|/4.24044e-147/PREDICTED: LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1-like [Pongo abelii]
gnl|UG|Ssc#S35168869	3	0.86	0	0	4	1.2	"Sus scrofa mRNA, clone:OVRM10129A01, expressed in ovary /gb=AK235958 /gi=115550883 /ug=Ssc.57230 /len=2124"	-	GO:0005488//binding	-	gi|149694105|ref|XP_001503834.1|/0/PREDICTED: similar to BSD domain containing 1 isoform 1 [Equus caballus]
gnl|UG|Ssc#S35167795	99	28.5	43	12.29	38	11.42	"Sus scrofa mRNA, clone:OVRM10184C11, expressed in ovary /gb=AK236351 /gi=115551944 /ug=Ssc.55150 /len=2634"	GO:0031304//intrinsic to mitochondrial inner membrane	GO:0005488//binding	-	gi|296482467|gb|DAA24582.1|/0/mitochondrial inner membrane protein [Bos taurus]
gnl|UG|Ssc#S21543606	12	3.45	10	2.86	39	11.72	"UMC-pd5ov-001-e08 Day 5 ovary (follicle and corpus luteum) pd5ov Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO952066 /gi=51329074 /ug=Ssc.86207 /len=133"	-	-	-	gi|293349247|ref|XP_002727087.1|/1.16666e-07/PREDICTED: hCG1994130-like [Rattus norvegicus]
gnl|UG|Ssc#S50204935	6	1.73	0	0	4	1.2	"susfleck_AF_30_H06 SUSFLECK Abdominal Fat Sus scrofa cDNA clone 30_H06, mRNA sequence /clone=30_H06 /gb=FD636771 /gi=220986190 /ug=Ssc.93067 /len=779"	GO:0005815//microtubule organizing center;GO:0043234//protein complex;GO:0005770//late endosome;GO:0044431//Golgi apparatus part;GO:0030133//transport vesicle	-	GO:0043161//proteasomal ubiquitin-dependent protein catabolic process	"gi|148670275|gb|EDL02222.1|/5.47783e-55/expressed sequence AI314180, isoform CRA_c [Mus musculus]"
gnl|UG|Ssc#S18378076	2	0.58	0	0	0	0	"922549 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK458189 /gi=40829470 /ug=Ssc.84612 /len=883"	GO:0031981//nuclear lumen	GO:0046914//transition metal ion binding;GO:0030528//transcription regulator activity;GO:0005515//protein binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding;GO:0030234//enzyme regulator activity	"GO:0014020;GO:0016055//Wnt receptor signaling pathway;GO:0001667//ameboidal cell migration;GO:0009952//anterior/posterior pattern formation;GO:0006355//regulation of transcription, DNA-dependent;GO:0021543//pallium development;GO:0043406//positive regulation of MAP kinase activity"	gi|301760450|ref|XP_002916018.1|/2.85384e-29/PREDICTED: LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 2-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S23694979	5	1.44	3	0.86	3	0.9	"1103236 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=DN106082 /gi=59781345 /ug=Ssc.3656 /len=867"	-	-	-	-
gnl|UG|Ssc#S58301723	3	0.86	0	0	4	1.2	"PREDICTED: Sus scrofa coatomer subunit gamma-2-like (LOC100515937), partial mRNA /cds=p(1,2158) /gb=XM_003134685 /gi=311275398 /ug=Ssc.70337 /len=2158"	GO:0030120//vesicle coat	GO:0005488//binding	GO:0048193//Golgi vesicle transport;GO:0015031//protein transport	"gi|311275399|ref|XP_003134733.1|/0/PREDICTED: coatomer subunit gamma-2-like, partial [Sus scrofa]"
gnl|UG|Ssc#S46877945	12	3.45	4	1.14	6	1.8	"PREDICTED: Sus scrofa differentially expressed in FDCP 6 homolog (mouse) (DEF6), mRNA /cds=p(1,1896) /gb=XM_001929239 /gi=311260285 /ug=Ssc.21248 /len=2275"	GO:0016020//membrane;GO:0044424//intracellular part	GO:0005488//binding	-	gi|194040365|ref|XP_001929274.1|/6.6782e-169/PREDICTED: differentially expressed in FDCP 6 homolog [Sus scrofa]
gnl|UG|Ssc#S58314452	0	0	2	0.57	4	1.2	"PREDICTED: Sus scrofa transmembrane protein 2-like (LOC100516588), mRNA /cds=p(1,2550) /gb=XM_003121956 /gi=311245895 /ug=Ssc.22123 /len=3097"	GO:0031224//intrinsic to membrane	-	-	gi|311245896|ref|XP_003122004.1|/0/PREDICTED: transmembrane protein 2-like [Sus scrofa]
gnl|UG|Ssc#S26718494	0	0	7	2	3	0.9	"AJ954578 KN404_1 Sus scrofa cDNA clone C0007745o18 3', mRNA sequence /clone=C0007745o18 /clone_end=3' /gb=AJ954578 /gi=74371394 /ug=Ssc.36464 /len=777"	-	-	-	-
gnl|UG|Ssc#S58302557	0	0	0	0	0	0	"PREDICTED: Sus scrofa triple functional domain protein-like (LOC100519397), mRNA /cds=p(1,1872) /gb=XM_003133843 /gi=311273480 /ug=Ssc.79089 /len=2191"	-	-	-	-
gnl|UG|Ssc#S35168606	15	4.32	9	2.57	4	1.2	"Sus scrofa mRNA, clone:THY010050B11, expressed in thymus /gb=AK238945 /gi=115551084 /ug=Ssc.8818 /len=1309"	GO:0031981//nuclear lumen;GO:0005657//replication fork	GO:0017111//nucleoside-triphosphatase activity;GO:0032559;GO:0003677//DNA binding	GO:0006261//DNA-dependent DNA replication;GO:0017085//response to insecticide;GO:0051320;GO:0007050//cell cycle arrest;GO:0009207;GO:0006289//nucleotide-excision repair;GO:0000723//telomere maintenance	gi|298104116|ref|NP_001177121.1|/0/replication factor C subunit 3 [Sus scrofa]
gnl|UG|Ssc#S19537684	0	0	2	0.57	0	0	"941075 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CN153908 /gi=46168338 /ug=Ssc.85212 /len=756"	-	-	-	-
gnl|UG|Ssc#S35171945	27	7.77	7	2	27	8.11	"Sus scrofa mRNA, clone:OVRM10024F01, expressed in ovary /gb=AK234866 /gi=115547890 /ug=Ssc.24428 /len=2402"	GO:0031966//mitochondrial membrane;GO:0042579//microbody;GO:0044431//Golgi apparatus part;GO:0042598//vesicular fraction	GO:0017111//nucleoside-triphosphatase activity;GO:0019899//enzyme binding;GO:0032561	GO:0006915//apoptosis;GO:0009207;GO:0032501//multicellular organismal process;GO:0000266//mitochondrial fission	"gi|148665000|gb|EDK97416.1|/0/dynamin 1-like, isoform CRA_c [Mus musculus]"
gnl|UG|Ssc#S58312761	19	5.47	2	0.57	18	5.41	"PREDICTED: Sus scrofa TBC1 domain family, member 9B (with GRAM domain), transcript variant 2 (TBC1D9B), mRNA /cds=p(72,3827) /gb=XM_003123648 /gi=311249546 /ug=Ssc.1999 /len=5517"	GO:0031224//intrinsic to membrane	GO:0005099//Ras GTPase activator activity;GO:0046872//metal ion binding	GO:0032313//regulation of Rab GTPase activity	gi|311249547|ref|XP_003123696.1|/0/PREDICTED: TBC1 domain family member 9B-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S58301544	343	98.75	188	53.74	109	32.76	"PREDICTED: Sus scrofa hypothetical protein LOC100521762 (LOC100521762), mRNA /cds=p(1,1410) /gb=XM_003134853 /gi=311275763 /ug=Ssc.27885 /len=2363"	GO:0005681//spliceosomal complex;GO:0031981//nuclear lumen	GO:0003697//single-stranded DNA binding	GO:0000377;GO:0050657	gi|311275764|ref|XP_003134901.1|/1.50017e-163/PREDICTED: hypothetical protein LOC100521762 [Sus scrofa]
gnl|UG|Ssc#S58304485	3	0.86	0	0	2	0.6	"PREDICTED: Sus scrofa acetylcholine receptor subunit epsilon-like (LOC100515236), mRNA /cds=p(1,1488) /gb=XM_003131920 /gi=311268243 /ug=Ssc.78859 /len=1804"	GO:0005887//integral to plasma membrane	GO:0005231//excitatory extracellular ligand-gated ion channel activity;GO:0004888//transmembrane receptor activity	GO:0003012//muscle system process;GO:0006811//ion transport;GO:0006873//cellular ion homeostasis;GO:0007268//synaptic transmission	gi|311268244|ref|XP_003131968.1|/0/PREDICTED: acetylcholine receptor subunit epsilon-like [Sus scrofa]
gnl|UG|Ssc#S58311919	19	5.47	14	4	13	3.91	"PREDICTED: Sus scrofa syntaxin-4-like (LOC100523599), mRNA /cds=p(319,1212) /gb=XM_003124477 /gi=311251269 /ug=Ssc.19737 /len=1478"	GO:0031224//intrinsic to membrane;GO:0043234//protein complex;GO:0044459//plasma membrane part;GO:0000267//cell fraction;GO:0030141//stored secretory granule;GO:0044431//Golgi apparatus part	GO:0008092//cytoskeletal protein binding;GO:0005083//small GTPase regulator activity	GO:0001775//cell activation;GO:0019222//regulation of metabolic process;GO:0016044//cellular membrane organization;GO:0007599//hemostasis;GO:0048193//Golgi vesicle transport;GO:0065003;GO:0006904//vesicle docking involved in exocytosis;GO:0015031//protein transport	gi|311251270|ref|XP_003124525.1|/1.82948e-150/PREDICTED: syntaxin-4-like [Sus scrofa]
gnl|UG|Ssc#S34499965	68	19.58	63	18.01	43	12.92	"DB812663 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA 3', mRNA sequence /clone=OVRM10048E08 /clone_end=3' /gb=DB812663 /gi=112771430 /ug=Ssc.7096 /len=870"	GO:0031090//organelle membrane;GO:0043005//neuron projection;GO:0043232;GO:0005626//insoluble fraction;GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part	GO:0060089;GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0008092//cytoskeletal protein binding	"GO:0051704;GO:0001775//cell activation;GO:0048858//cell projection morphogenesis;GO:0019229//regulation of vasoconstriction;GO:0048017//inositol lipid-mediated signaling;GO:0007041//lysosomal transport;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0043065//positive regulation of apoptosis;GO:0014706//striated muscle tissue development;GO:0009207;GO:0016049//cell growth;GO:0031346//positive regulation of cell projection organization;GO:0031960//response to corticosteroid stimulus;GO:0001837//epithelial to mesenchymal transition;GO:0016477//cell migration;GO:0045596//negative regulation of cell differentiation;GO:0010952//positive regulation of peptidase activity;GO:0045597//positive regulation of cell differentiation;GO:0006935//chemotaxis;GO:0007265//Ras protein signal transduction;GO:0010975//regulation of neuron projection development;GO:0030155//regulation of cell adhesion;GO:0007599//hemostasis;GO:0043066//negative regulation of apoptosis;GO:0031589//cell-substrate adhesion;GO:0001101//response to acid;GO:0009968//negative regulation of signal transduction;GO:0006939//smooth muscle contraction;GO:0032233//positive regulation of actin filament bundle assembly;GO:0007249//I-kappaB kinase/NF-kappaB cascade;GO:0030518//steroid hormone receptor signaling pathway;GO:0032413//negative regulation of ion transmembrane transporter activity;GO:0030041//actin filament polymerization;GO:0009746;GO:0006950//response to stress;GO:0006412//translation;GO:0030832//regulation of actin filament length;GO:0031345//negative regulation of cell projection organization;GO:0010769//regulation of cell morphogenesis involved in differentiation;GO:0042345//regulation of NF-kappaB import into nucleus;GO:0006355//regulation of transcription, DNA-dependent"	gi|297285788|ref|XP_001094831.2|/4.76834e-37/PREDICTED: transforming protein RhoA-like [Macaca mulatta]
gnl|UG|Ssc#S6057683	20	5.76	6	1.72	11	3.31	"MI-P-H3-adm-f-02-1-UM.s1 MI-P-H3 Sus scrofa cDNA clone MI-P-H3-adm-f-02-1-UM 3', mRNA sequence /clone=MI-P-H3-adm-f-02-1-UM /clone_end=3' /gb=BF713076 /gi=12012551 /ug=Ssc.8344 /len=413"	-	-	-	-
gnl|UG|Ssc#S58301288	26	7.49	8	2.29	18	5.41	"PREDICTED: Sus scrofa structural maintenance of chromosomes protein 1A-like (LOC100523938), mRNA /cds=p(66,3767) /gb=XM_003135124 /gi=311276327 /ug=Ssc.42615 /len=4466"	GO:0000776//kinetochore;GO:0000228//nuclear chromosome;GO:0008278//cohesin complex	GO:0046983//protein dimerization activity;GO:0032559;GO:0003774//motor activity	GO:0006259//DNA metabolic process;GO:0007050//cell cycle arrest;GO:0009628//response to abiotic stimulus;GO:0000070//mitotic sister chromatid segregation;GO:0000377;GO:0033554//cellular response to stress;GO:0010948;GO:0035556//intracellular signal transduction	gi|74007448|ref|XP_538049.2|/0/PREDICTED: similar to Structural maintenance of chromosome 1-like 1 protein (SMC1alpha protein) (SB1.8/DXS423E protein) (Sb1.8) [Canis familiaris]
gnl|UG|Ssc#S20938093	77	22.17	50	14.29	54	16.23	"AJ649816 CSEQRAN19 Sus scrofa cDNA clone C0003273_J04, mRNA sequence /clone=C0003273_J04 /gb=AJ649816 /gi=49326661 /ug=Ssc.85628 /len=466"	GO:0000323//lytic vacuole;GO:0044459//plasma membrane part;GO:0009986//cell surface;GO:0000267//cell fraction;GO:0048770;GO:0044421//extracellular region part	GO:0004175//endopeptidase activity;GO:0005515//protein binding	GO:0044248//cellular catabolic process;GO:0009725//response to hormone stimulus;GO:0010243//response to organic nitrogen;GO:0009746;GO:0019222//regulation of metabolic process;GO:0010941//regulation of cell death;GO:0019538//protein metabolic process;GO:0014706//striated muscle tissue development;GO:0034097//response to cytokine stimulus;GO:0006950//response to stress;GO:0009605//response to external stimulus	gi|203648|gb|AAA40993.1|/9.1346e-80/cathepsin (EC 3.4.22.1) [Rattus norvegicus]
gnl|UG|Ssc#S23767955	3	0.86	0	0	3	0.9	"1139428 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN125574 /gi=59819853 /ug=Ssc.87253 /len=836"	GO:0016021//integral to membrane	GO:0019838//growth factor binding;GO:0005017//platelet-derived growth factor receptor activity;GO:0019900//kinase binding	GO:0009611//response to wounding;GO:0008202//steroid metabolic process;GO:0046546//development of primary male sexual characteristics;GO:0042476//odontogenesis;GO:0043627//response to estrogen stimulus;GO:0008406//gonad development;GO:0022602//ovulation cycle process;GO:0043009//chordate embryonic development;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0008284//positive regulation of cell proliferation;GO:0006468//protein phosphorylation;GO:0022008//neurogenesis;GO:0035270//endocrine system development;GO:0043062//extracellular structure organization	gi|301767988|ref|XP_002919416.1|/8.76721e-09/PREDICTED: alpha-type platelet-derived growth factor receptor-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S58307905	0	0	3	0.86	0	0	"PREDICTED: Sus scrofa unc-51-like kinase 3 (C. elegans) (ULK3), mRNA /cds=p(1,1419) /gb=XM_003128490 /gi=311260789 /ug=Ssc.3447 /len=2520"	GO:0044424//intracellular part	GO:0004672//protein kinase activity;GO:0032559	GO:0006464//protein modification process	gi|311260790|ref|XP_003128538.1|/0/PREDICTED: serine/threonine-protein kinase ULK3-like [Sus scrofa]
gnl|UG|Ssc#S50706549	66	19	83	23.73	70	21.04	"Sus scrofa HLA-B associated transcript 3 (BAT3), mRNA /cds=p(276,3662) /gb=NM_001145382 /gi=223950620 /ug=Ssc.16950 /len=3753"	-	-	-	-
gnl|UG|Ssc#S23213369	0	0	0	0	0	0	"Sus scrofa clone Clu_20837.scr.msk.p1.Contig2, mRNA sequence /gb=AY609608 /gi=52351203 /ug=Ssc.14218 /len=1758"	GO:0005798//Golgi-associated vesicle;GO:0031090//organelle membrane	GO:0005102//receptor binding	GO:0002429//immune response-activating cell surface receptor signaling pathway	gi|311244576|ref|XP_003121506.1|/0/PREDICTED: maspardin-like [Sus scrofa]
gnl|UG|Ssc#S20939183	15	4.32	33	9.43	19	5.71	"AJ650906 CSEQRAN19 Sus scrofa cDNA clone C0003276_K19, mRNA sequence /clone=C0003276_K19 /gb=AJ650906 /gi=49327751 /ug=Ssc.85550 /len=525"	GO:0031224//intrinsic to membrane;GO:0043231//intracellular membrane-bounded organelle;GO:0031090//organelle membrane;GO:0042598//vesicular fraction	GO:0070011	GO:0051605//protein maturation by peptide bond cleavage;GO:0030073//insulin secretion;GO:0015980//energy derivation by oxidation of organic compounds	gi|21313554|ref|NP_079744.1|/2.70374e-96/signal peptidase complex catalytic subunit SEC11C [Mus musculus]
gnl|UG|Ssc#S46879853	20	5.76	42	12.01	43	12.92	"PREDICTED: Sus scrofa beta-nerve growth factor-like (LOC100156578), mRNA /cds=p(1,1203) /gb=XM_001929549 /gi=311254524 /ug=Ssc.19976 /len=1333"	GO:0044431//Golgi apparatus part;GO:0044432//endoplasmic reticulum part;GO:0044421//extracellular region part	GO:0004871//signal transducer activity;GO:0005123//death receptor binding	GO:0050804//regulation of synaptic transmission;GO:0048017//inositol lipid-mediated signaling;GO:0009628//response to abiotic stimulus;GO:0050767//regulation of neurogenesis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0006952//defense response;GO:0010863//positive regulation of phospholipase C activity;GO:0051726//regulation of cell cycle;GO:0009967//positive regulation of signal transduction;GO:0031346//positive regulation of cell projection organization;GO:0031960//response to corticosteroid stimulus;GO:0016486//peptide hormone processing;GO:0007611//learning or memory;GO:0007600//sensory perception;GO:0001934//positive regulation of protein phosphorylation;GO:0009605//response to external stimulus;GO:0007626//locomotory behavior;GO:0043066//negative regulation of apoptosis;GO:0030307//positive regulation of cell growth;GO:0007264//small GTPase mediated signal transduction;GO:0002237//response to molecule of bacterial origin;GO:0008283//cell proliferation;GO:0000165//MAPKKK cascade;GO:0010769//regulation of cell morphogenesis involved in differentiation;GO:0043388//positive regulation of DNA binding;GO:0006917//induction of apoptosis	gi|311254525|ref|XP_001929584.2|/0/PREDICTED: beta-nerve growth factor-like [Sus scrofa]
gnl|UG|Ssc#S35166997	120	34.55	99	28.3	122	36.66	"Sus scrofa mRNA, clone:LVRM10054C08, expressed in liver /gb=AK232947 /gi=115552742 /ug=Ssc.54137 /len=2930"	GO:0005789//endoplasmic reticulum membrane	"GO:0019842//vitamin binding;GO:0046914//transition metal ion binding;GO:0016701//oxidoreductase activity, acting on single donors with incorporation of molecular oxygen;GO:0046527//glucosyltransferase activity;GO:0070815//peptidyl-lysine 5-dioxygenase activity"	GO:0009725//response to hormone stimulus;GO:0001885//endothelial cell development;GO:0048729//tissue morphogenesis;GO:0071711//basement membrane organization;GO:0009887//organ morphogenesis;GO:0007399//nervous system development;GO:0033036;GO:0043412;GO:0050880//regulation of blood vessel size	"gi|149755984|ref|XP_001504506.1|/0/PREDICTED: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 [Equus caballus]"
gnl|UG|Ssc#S58300906	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa host cell factor 1-like (LOC100523834), mRNA /cds=p(453,6542) /gb=XM_003135485 /gi=311277194 /ug=Ssc.28697 /len=6725"	GO:0035097//histone methyltransferase complex;GO:0016585//chromatin remodeling complex;GO:0000123//histone acetyltransferase complex	GO:0003712//transcription cofactor activity;GO:0001071//nucleic acid binding transcription factor activity;GO:0005515//protein binding	"GO:0051726//regulation of cell cycle;GO:0006461//protein complex assembly;GO:0031647//regulation of protein stability;GO:0006351//transcription, DNA-dependent;GO:0019042"	gi|311277195|ref|XP_003135533.1|/0/PREDICTED: host cell factor 1-like [Sus scrofa]
gnl|UG|Ssc#S46876565	0	0	0	0	3	0.9	"PREDICTED: Sus scrofa solute carrier family 35 member E4-like (LOC100158095), mRNA /cds=p(1,1053) /gb=XM_001929325 /gi=311270943 /ug=Ssc.45035 /len=1591"	-	-	-	gi|194043240|ref|XP_001929360.1|/8.52505e-117/PREDICTED: solute carrier family 35 member E4-like [Sus scrofa]
gnl|UG|Ssc#S58305543	8	2.3	2	0.57	5	1.5	"PREDICTED: Sus scrofa zinc finger, MYND domain containing 11 (ZMYND11), mRNA /cds=p(136,1944) /gb=XM_003130850 /gi=311265947 /ug=Ssc.57404 /len=4116"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0046914//transition metal ion binding	GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0051704	gi|311265948|ref|XP_003130898.1|/0/PREDICTED: zinc finger MYND domain-containing protein 11-like [Sus scrofa]
gnl|UG|Ssc#S50159126	0	0	0	0	2	0.6	"susfleck_PG_37_H05 SUSFLECK Pituitary Gland Sus scrofa cDNA clone 37_H05, mRNA sequence /clone=37_H05 /gb=FD590962 /gi=220996989 /ug=Ssc.92827 /len=696"	GO:0043231//intracellular membrane-bounded organelle;GO:0016020//membrane	GO:0005488//binding;GO:0016787//hydrolase activity	GO:0006508//proteolysis	gi|114681395|ref|XP_001152359.1|/5.33177e-69/PREDICTED: similar to signal peptide peptidase isoform 6 [Pan troglodytes]
gnl|UG|Ssc#S46875191	2	0.58	0	0	0	0	"Sus scrofa phosphodiesterase 4B cAMP-specific isoform 1 (PDE4B) mRNA, complete cds, alternatively spliced /cds=p(203,2413) /gb=EU339284 /gi=167966197 /ug=Ssc.25586 /len=2966"	GO:0043231//intracellular membrane-bounded organelle;GO:0044444//cytoplasmic part;GO:0000267//cell fraction	"GO:0043169//cation binding;GO:0004114//3',5'-cyclic-nucleotide phosphodiesterase activity"	GO:0006195//purine nucleotide catabolic process;GO:0023052//signaling;GO:0006936//muscle contraction	"gi|194097391|ref|NP_001123491.1|/0/cAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform 1 [Sus scrofa]"
gnl|UG|Ssc#S58306021	7	2.02	2	0.57	2	0.6	"PREDICTED: Sus scrofa ER degradation-enhancing alpha-mannosidase-like 3-like (LOC100517298), partial mRNA /cds=p(1,2934) /gb=XM_003130378 /gi=311264970 /ug=Ssc.86160 /len=2934"	GO:0044432//endoplasmic reticulum part;GO:0031090//organelle membrane	GO:0046872//metal ion binding;GO:0015924;GO:0005515//protein binding;GO:0004559//alpha-mannosidase activity	GO:0006511//ubiquitin-dependent protein catabolic process;GO:0006950//response to stress;GO:0006487//protein N-linked glycosylation	"gi|311264971|ref|XP_003130426.1|/0/PREDICTED: ER degradation-enhancing alpha-mannosidase-like 3-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58306671	62	17.85	51	14.58	64	19.23	"PREDICTED: Sus scrofa phosphatidylinositol binding clathrin assembly protein (PICALM), mRNA /cds=p(303,2264) /gb=XM_003129727 /gi=311263642 /ug=Ssc.10983 /len=4138"	GO:0005905//coated pit;GO:0030128//clathrin coat of endocytic vesicle	GO:0035091//phosphatidylinositol binding;GO:0030276//clathrin binding	GO:0048812//neuron projection morphogenesis;GO:0006901//vesicle coating;GO:0006898//receptor-mediated endocytosis;GO:0048534;GO:0045806//negative regulation of endocytosis;GO:0048667//cell morphogenesis involved in neuron differentiation;GO:0008104//protein localization;GO:0065003	gi|311263643|ref|XP_003129775.1|/0/PREDICTED: phosphatidylinositol-binding clathrin assembly protein-like [Sus scrofa]
gnl|UG|Ssc#S58312593	8	2.3	22	6.29	10	3.01	"PREDICTED: Sus scrofa membrane protein FAM174A-like (LOC100525564), mRNA /cds=p(1,576) /gb=XM_003123804 /gi=311249892 /ug=Ssc.24081 /len=1463"	-	-	-	gi|311249893|ref|XP_003123852.1|/3.37261e-64/PREDICTED: membrane protein FAM174A-like [Sus scrofa]
gnl|UG|Ssc#S58313862	905	260.55	634	181.23	571	171.6	"PREDICTED: Sus scrofa latent-transforming growth factor beta-binding protein 3-like (LOC100517877), mRNA /cds=p(9,5912) /gb=XM_003122559 /gi=311247305 /ug=Ssc.49660 /len=6542"	-	GO:0046872//metal ion binding;GO:0005515//protein binding	GO:0048731;GO:0007178//transmembrane receptor protein serine/threonine kinase signaling pathway	gi|311247306|ref|XP_003122607.1|/0/PREDICTED: latent-transforming growth factor beta-binding protein 3-like [Sus scrofa]
gnl|UG|Ssc#S18361064	2	0.58	2	0.57	0	0	"917251 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK456566 /gi=40803780 /ug=Ssc.29441 /len=861"	-	-	-	gi|311252185|ref|XP_003124972.1|/1.88375e-46/PREDICTED: protein FAM178B-like [Sus scrofa]
gnl|UG|Ssc#S58305102	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa DDB1 and CUL4 associated factor 7 (DCAF7), mRNA /cds=p(202,1230) /gb=XM_003131294 /gi=311266976 /ug=Ssc.27900 /len=1574"	GO:0031461//cullin-RING ubiquitin ligase complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0032501//multicellular organismal process;GO:0009888//tissue development;GO:0032446//protein modification by small protein conjugation	gi|58037257|ref|NP_082222.1|/0/DDB1- and CUL4-associated factor 7 [Mus musculus]
gnl|UG|Ssc#S46875724	120	34.55	23	6.57	86	25.85	"PREDICTED: Sus scrofa mediator complex subunit 12 (MED12), mRNA /cds=p(1,6549) /gb=XM_001927848 /gi=311276471 /ug=Ssc.12334 /len=6778"	GO:0043234//protein complex;GO:0031981//nuclear lumen	GO:0004871//signal transducer activity;GO:0016251//general RNA polymerase II transcription factor activity;GO:0008134//transcription factor binding;GO:0003713//transcription coactivator activity	"GO:0016055//Wnt receptor signaling pathway;GO:0006357//regulation of transcription from RNA polymerase II promoter;GO:0030518//steroid hormone receptor signaling pathway;GO:0006352//transcription initiation, DNA-dependent"	gi|194044988|ref|XP_001927883.1|/0/PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Sus scrofa]
gnl|UG|Ssc#S46880282	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa trafficking protein particle complex 9 (TRAPPC9), mRNA /cds=p(1,3816) /gb=XM_001926196 /gi=311253330 /ug=Ssc.13102 /len=3816"	GO:0043231//intracellular membrane-bounded organelle	-	GO:0048869	gi|311253331|ref|XP_001926231.2|/0/PREDICTED: trafficking protein particle complex subunit 9 [Sus scrofa]
gnl|UG|Ssc#S58302709	31	8.93	0	0	9	2.7	"PREDICTED: Sus scrofa dedicator of cytokinesis 10 (DOCK10), mRNA /cds=p(52,5481) /gb=XM_003133687 /gi=311273143 /ug=Ssc.31162 /len=5481"	-	-	-	gi|311273144|ref|XP_003133735.1|/0/PREDICTED: dedicator of cytokinesis protein 10-like [Sus scrofa]
gnl|UG|Ssc#S18361595	0	0	0	0	0	0	"921352 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CK457084 /gi=40804298 /ug=Ssc.84621 /len=863"	-	-	-	gi|119574614|gb|EAW54229.1|/4.2526e-22/hCG1820925 [Homo sapiens]
gnl|UG|Ssc#S55327069	7	2.02	28	8	0	0	"Sus scrofa mRNA, clone:OVR010059H02, expressed in ovary /gb=AK347582 /gi=288576987 /ug=Ssc.42189 /len=3278"	GO:0005626//insoluble fraction;GO:0044425//membrane part	GO:0005035//death receptor activity;GO:0005488//binding	GO:0031348//negative regulation of defense response;GO:0019221//cytokine-mediated signaling pathway;GO:0002376//immune system process;GO:0043487//regulation of RNA stability	gi|157427685|ref|NP_001090910.2|/0/tumor necrosis factor receptor superfamily member 1B [Sus scrofa]
gnl|UG|Ssc#S35166738	2	0.58	3	0.86	0	0	"Sus scrofa mRNA, clone:THY010114D10, expressed in thymus /gb=AK239587 /gi=115553001 /ug=Ssc.2678 /len=1878"	-	GO:0070567	GO:0006644//phospholipid metabolic process;GO:0046335//ethanolamine biosynthetic process	gi|78045521|ref|NP_001030261.1|/0/ethanolamine-phosphate cytidylyltransferase [Bos taurus]
gnl|UG|Ssc#S58314820	17	4.89	17	4.86	17	5.11	"PREDICTED: Sus scrofa TYRO3 protein tyrosine kinase (TYRO3), mRNA /cds=p(1,2682) /gb=XM_003121580 /gi=311244939 /ug=Ssc.1630 /len=3780"	GO:0016021//integral to membrane	GO:0004871//signal transducer activity;GO:0004713//protein tyrosine kinase activity;GO:0046983//protein dimerization activity;GO:0032559;GO:0019900//kinase binding	GO:0006909//phagocytosis;GO:0048511//rhythmic process;GO:0007243//intracellular protein kinase cascade;GO:0048608//reproductive structure development;GO:0002695;GO:0000904//cell morphogenesis involved in differentiation;GO:0048232//male gamete generation;GO:0006464//protein modification process;GO:0030098//lymphocyte differentiation;GO:0016477//cell migration;GO:0046903//secretion;GO:0043066//negative regulation of apoptosis	gi|311244940|ref|XP_003121628.1|/0/PREDICTED: tyrosine-protein kinase receptor TYRO3-like [Sus scrofa]
gnl|UG|Ssc#S5980976	0	0	2	0.57	0	0	"Z94858 Pig ovarian granulosa cell mRNA Sus scrofa cDNA clone b9, mRNA sequence /clone=b9 /gb=Z94858 /gi=2765810 /ug=Ssc.972 /len=220"	-	-	-	-
gnl|UG|Ssc#S23758977	0	0	2	0.57	0	0	"1116176 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN116596 /gi=59810856 /ug=Ssc.21040 /len=876"	GO:0043231//intracellular membrane-bounded organelle	GO:0016301//kinase activity;GO:0032559	GO:0012501//programmed cell death;GO:0015980//energy derivation by oxidation of organic compounds;GO:0006796//phosphate metabolic process	gi|194224202|ref|XP_001915879.1|/1.00217e-143/PREDICTED: FAST kinase domains 5 [Equus caballus]
gnl|UG|Ssc#S58311260	8	2.3	0	0	36	10.82	"PREDICTED: Sus scrofa reticulon-4-like (LOC100515890), mRNA /cds=p(271,3816) /gb=XM_003125142 /gi=311252624 /ug=Ssc.42954 /len=3816"	GO:0032991//macromolecular complex;GO:0044297//cell body;GO:0042995//cell projection;GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0005515//protein binding	GO:0014046;GO:0048755//branching morphogenesis of a nerve;GO:0045596//negative regulation of cell differentiation;GO:0032101;GO:0007409//axonogenesis;GO:0007029//endoplasmic reticulum organization;GO:0010769//regulation of cell morphogenesis involved in differentiation;GO:0006916//anti-apoptosis;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0051931;GO:0021545//cranial nerve development;GO:0014015//positive regulation of gliogenesis;GO:0030308//negative regulation of cell growth;GO:0021799//cerebral cortex radially oriented cell migration;GO:0010001//glial cell differentiation;GO:0010977//negative regulation of neuron projection development	gi|311252625|ref|XP_003125190.1|/0/PREDICTED: reticulon-4-like [Sus scrofa]
gnl|UG|Ssc#S55323176	6	1.73	2	0.57	2	0.6	"Sus scrofa mRNA, clone:SPL010094C11, expressed in spleen /gb=AK350566 /gi=288781696 /ug=Ssc.80580 /len=2246"	GO:0043231//intracellular membrane-bounded organelle	GO:0005088//Ras guanyl-nucleotide exchange factor activity	-	gi|300797400|ref|NP_001179275.1|/0/similar to Williams-Beuren syndrome chromosomal region 16 protein (RCC1-like G exchanging factor-like protein) [Bos taurus]
gnl|UG|Ssc#S58302381	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa microtubule associated serine/threonine kinase family member 4 (MAST4), mRNA /cds=p(47,7333) /gb=XM_003134016 /gi=311273839 /ug=Ssc.76336 /len=7333"	-	"GO:0016772//transferase activity, transferring phosphorus-containing groups"	-	gi|311273840|ref|XP_003134064.1|/0/PREDICTED: microtubule-associated serine/threonine-protein kinase 4-like [Sus scrofa]
gnl|UG|Ssc#S41578632	26	7.49	12	3.43	17	5.11	"Sus scrofa peroxisomal biogenesis factor 6 (PEX6), mRNA /cds=p(63,2972) /gb=NM_001110426 /gi=160333757 /ug=Ssc.19314 /len=3418"	GO:0044439	GO:0016887//ATPase activity;GO:0005515//protein binding;GO:0032559	GO:0016558//protein import into peroxisome matrix;GO:0009207;GO:0031647//regulation of protein stability	gi|160333758|ref|NP_001103896.1|/0/peroxisome biogenesis factor 6 [Sus scrofa]
gnl|UG|Ssc#S43509625	0	0	0	0	4	1.2	"Sus scrofa chromosome 6 open reading frame 153 ortholog (C7H6orf153), mRNA /cds=p(293,1033) /gb=NM_001123090 /gi=178057176 /ug=Ssc.17083 /len=3023"	-	-	-	-
gnl|UG|Ssc#S46876547	69	19.87	67	19.15	46	13.82	"PREDICTED: Sus scrofa developmentally regulated GTP binding protein 1, transcript variant 2 (DRG1), mRNA /cds=p(106,1212) /gb=XM_001927286 /gi=311270973 /ug=Ssc.55846 /len=1945"	GO:0005856//cytoskeleton;GO:0043231//intracellular membrane-bounded organelle	GO:0032561;GO:0005515//protein binding	GO:0032501//multicellular organismal process	gi|194043276|ref|XP_001927321.1|/0/PREDICTED: developmentally-regulated GTP-binding protein 1 isoform 2 [Sus scrofa]
gnl|UG|Ssc#S40388328	5	1.44	6	1.72	6	1.8	"rova010_k16.y1 ova Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW482935 /gi=182870354 /ug=Ssc.29130 /len=530"	-	-	-	-
gnl|UG|Ssc#S55322940	8	2.3	0	0	0	0	"Sus scrofa mRNA, clone:SPL010102C07, expressed in spleen /gb=AK350603 /gi=288781932 /ug=Ssc.4484 /len=2161"	GO:0005770//late endosome;GO:0031224//intrinsic to membrane	GO:0032934//sterol binding;GO:0015248//sterol transporter activity	GO:0046907//intracellular transport;GO:0015918//sterol transport;GO:0016125//sterol metabolic process	gi|219522020|ref|NP_001137197.1|/0/stAR-related lipid transfer protein 3 [Sus scrofa]
gnl|UG|Ssc#S35169958	0	0	5	1.43	0	0	"Sus scrofa mRNA, clone:TES010061G04, expressed in testis /gb=AK238541 /gi=115549881 /ug=Ssc.12159 /len=1374"	GO:0043005//neuron projection;GO:0005626//insoluble fraction;GO:0044297//cell body;GO:0005783//endoplasmic reticulum;GO:0005887//integral to plasma membrane	"GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0005543//phospholipid binding;GO:0019904//protein domain specific binding;GO:0050664//oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor"	GO:0006940//regulation of smooth muscle contraction;GO:0009620//response to fungus;GO:0012501//programmed cell death;GO:0070944;GO:0042743//hydrogen peroxide metabolic process;GO:0006605//protein targeting;GO:0006690//icosanoid metabolic process;GO:0009207;GO:0006801//superoxide metabolic process	gi|164023818|ref|NP_001106691.1|/0/neutrophil cytosol factor 1 [Sus scrofa]
gnl|UG|Ssc#S23212851	27	7.77	5	1.43	22	6.61	"Sus scrofa clone Clu_8146.scr.msk.p1.Contig1, mRNA sequence /gb=AY610157 /gi=52351727 /ug=Ssc.80589 /len=1991"	GO:0005681//spliceosomal complex;GO:0030532//small nuclear ribonucleoprotein complex;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0000377	gi|301777189|ref|XP_002924017.1|/0/PREDICTED: LOW QUALITY PROTEIN: u5 small nuclear ribonucleoprotein 40 kDa protein-like [Ailuropoda melanoleuca]
gnl|UG|Ssc#S35167948	41	11.8	15	4.29	25	7.51	"Sus scrofa mRNA, clone:OVRM10162H02, expressed in ovary /gb=AK236197 /gi=115551791 /ug=Ssc.28109 /len=1443"	GO:0005770//late endosome	GO:0005515//protein binding	GO:0006810//transport;GO:0009987//cellular process	gi|62460498|ref|NP_001014904.1|/9.2734e-75/charged multivesicular body protein 1b [Bos taurus]
gnl|UG|Ssc#S35173035	3	0.86	2	0.57	3	0.9	"Sus scrofa mRNA, clone:SPL010073C04, expressed in spleen /gb=AK237646 /gi=115546800 /ug=Ssc.50196 /len=2679"	-	-	-	-
gnl|UG|Ssc#S58308530	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa zinc finger protein 521-like (LOC100513211), partial mRNA /cds=p(1,363) /gb=XM_003127869 /gi=311259059 /ug=Ssc.6157 /len=1153"	-	GO:0005488//binding	-	"gi|311259060|ref|XP_003127917.1|/1.9199e-69/PREDICTED: zinc finger protein 521-like, partial [Sus scrofa]"
gnl|UG|Ssc#S58309221	5	1.44	2	0.57	0	0	"PREDICTED: Sus scrofa DNA-binding death effector domain-containing protein 2-like (LOC100516271), mRNA /cds=p(1,912) /gb=XM_003127178 /gi=311257648 /ug=Ssc.32508 /len=1328"	GO:0031981//nuclear lumen	GO:0003676//nucleic acid binding;GO:0032947//protein complex scaffold	GO:0007165//signal transduction;GO:0008624//induction of apoptosis by extracellular signals;GO:0010467//gene expression;GO:0016072//rRNA metabolic process;GO:0006921//cellular component disassembly involved in apoptosis	gi|311257649|ref|XP_003127226.1|/1.89506e-111/PREDICTED: DNA-binding death effector domain-containing protein 2-like [Sus scrofa]
gnl|UG|Ssc#S26729861	2	0.58	0	0	2	0.6	"AJ940769 CSEQRAN17 Sus scrofa cDNA clone C0007315o11 3', mRNA sequence /clone=C0007315o11 /clone_end=3' /gb=AJ940769 /gi=74357585 /ug=Ssc.87804 /len=577"	-	-	-	-
gnl|UG|Ssc#S55321653	3	0.86	0	0	0	0	"Sus scrofa mRNA, clone:ITT010041A12, expressed in small intestine /gb=AK345034 /gi=288783219 /ug=Ssc.25223 /len=1449"	GO:0031981//nuclear lumen	GO:0004518//nuclease activity	"GO:0006399//tRNA metabolic process;GO:0000394//RNA splicing, via endonucleolytic cleavage and ligation"	gi|119912727|ref|XP_588361.3|/1.3444e-89/PREDICTED: hypothetical protein [Bos taurus]
gnl|UG|Ssc#S35165338	239	68.81	738	210.96	439	131.93	"Sus scrofa mRNA, clone:LVRM10138G10, expressed in liver /gb=AK233398 /gi=115554388 /ug=Ssc.1037 /len=1645"	GO:0012505//endomembrane system;GO:0043231//intracellular membrane-bounded organelle;GO:0031224//intrinsic to membrane;GO:0005626//insoluble fraction	GO:0005515//protein binding;GO:0032559	GO:0048731;GO:0012502//induction of programmed cell death	gi|108796070|ref|NP_001035834.1|/8.25288e-147/integral membrane protein 2B [Sus scrofa]
gnl|UG|Ssc#S58306679	12	3.45	46	13.15	25	7.51	"PREDICTED: Sus scrofa CREB/ATF bZIP transcription factor-like, transcript variant 1 (LOC100518742), mRNA /cds=p(319,1395) /gb=XM_003129721 /gi=311263626 /ug=Ssc.9503 /len=2820"	GO:0043231//intracellular membrane-bounded organelle	GO:0003676//nucleic acid binding;GO:0016564//transcription repressor activity	"GO:0051707//response to other organism;GO:0006355//regulation of transcription, DNA-dependent;GO:0010629//negative regulation of gene expression"	gi|311263627|ref|XP_003129769.1|/8.4144e-108/PREDICTED: CREB/ATF bZIP transcription factor-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S55318568	9	2.59	3	0.86	23	6.91	"Sus scrofa mRNA, clone:UTR010075F05, expressed in uterus /gb=AK352403 /gi=288786316 /ug=Ssc.2772 /len=956"	-	GO:0005488//binding	-	gi|73948465|ref|XP_541689.2|/6.21025e-105/PREDICTED: similar to CG15119-PA [Canis familiaris]
gnl|UG|Ssc#S46877679	0	0	2	0.57	0	0	"PREDICTED: Sus scrofa collagen, type VIII, alpha 1 (COL8A1), mRNA /cds=p(1,2235) /gb=XM_001926443 /gi=311270087 /ug=Ssc.16132 /len=2535"	-	-	-	-
gnl|UG|Ssc#S21581091	4	1.15	2	0.57	4	1.2	"UMC-pd0fol-012-c05 D0 ovarian follicle gilt standing estrus pd0fol Sus scrofa cDNA 3', mRNA sequence /clone_end=3' /gb=CO994192 /gi=51353466 /ug=Ssc.86689 /len=351"	-	-	-	-
gnl|UG|Ssc#S58310337	131	37.72	101	28.87	143	42.98	"PREDICTED: Sus scrofa thioredoxin, mitochondrial-like (LOC100158080), mRNA /cds=p(1,678) /gb=XM_003126064 /gi=311255164 /ug=Ssc.14827 /len=1406"	-	-	-	"gi|311255165|ref|XP_003126112.1|/3.46385e-127/PREDICTED: thioredoxin, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S58304536	2	0.58	2	0.57	0	0	"PREDICTED: Sus scrofa cystinosin-like (LOC100515235), mRNA /cds=p(105,1226) /gb=XM_003131846 /gi=311268140 /ug=Ssc.18179 /len=2174"	GO:0031224//intrinsic to membrane;GO:0005764//lysosome;GO:0005768//endosome	GO:0000099	GO:0019752//carboxylic acid metabolic process;GO:0007417//central nervous system development;GO:0006790//sulfur compound metabolic process;GO:0009205;GO:0000101//sulfur amino acid transport;GO:0050877//neurological system process	gi|311268141|ref|XP_003131894.1|/0/PREDICTED: cystinosin-like [Sus scrofa]
gnl|UG|Ssc#S58302552	157	45.2	160	45.74	168	50.49	"PREDICTED: Sus scrofa progressive ankylosis protein homolog (LOC100519227), mRNA /cds=p(36,491) /gb=XM_003133842 /gi=311273490 /ug=Ssc.17592 /len=2381"	GO:0016021//integral to membrane	GO:0015291//secondary active transmembrane transporter activity;GO:0015103//inorganic anion transmembrane transporter activity	GO:0048731;GO:0006817//phosphate transport;GO:0030278//regulation of ossification;GO:0007610//behavior	gi|296475671|gb|DAA17786.1|/5.5113e-81/progressive ankylosis protein [Bos taurus]
gnl|UG|Ssc#S58307877	4	1.15	5	1.43	0	0	"PREDICTED: Sus scrofa bromodomain adjacent to zinc finger domain, 1A (BAZ1A), mRNA /cds=p(1,5028) /gb=XM_003128518 /gi=311260886 /ug=Ssc.6274 /len=5821"	GO:0005678//chromatin assembly complex	GO:0004468//lysine N-acetyltransferase activity;GO:0046914//transition metal ion binding	"GO:0016568//chromatin modification;GO:0006351//transcription, DNA-dependent"	gi|311260887|ref|XP_003128566.1|/0/PREDICTED: LOW QUALITY PROTEIN: bromodomain adjacent to zinc finger domain protein 1A [Sus scrofa]
gnl|UG|Ssc#S58311855	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa amiloride-sensitive sodium channel subunit gamma-like (LOC100522244), mRNA /cds=p(142,2100) /gb=XM_003124543 /gi=311251399 /ug=Ssc.29454 /len=3207"	GO:0005626//insoluble fraction;GO:0044459//plasma membrane part;GO:0009986//cell surface;GO:0034703//cation channel complex	GO:0019904//protein domain specific binding;GO:0005272//sodium channel activity	GO:0006814//sodium ion transport;GO:0007606//sensory perception of chemical stimulus;GO:0044319	gi|311251400|ref|XP_003124591.1|/0/PREDICTED: amiloride-sensitive sodium channel subunit gamma-like [Sus scrofa]
gnl|UG|Ssc#S18546832	2	0.58	0	0	0	0	"BX915483 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0030.l.13 5prim, mRNA sequence /clone=scan0030.l.13 /clone_end=5' /gb=BX915483 /gi=90244935 /ug=Ssc.33949 /len=872"	GO:0016020//membrane;GO:0031981//nuclear lumen	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006412//translation	gi|296226008|ref|XP_002758745.1|/6.2485e-91/PREDICTED: ankyrin repeat and BTB/POZ domain-containing protein 1 isoform 1 [Callithrix jacchus]
gnl|UG|Ssc#S58304643	21	6.05	17	4.86	27	8.11	"PREDICTED: Sus scrofa WD repeat and SOCS box-containing 1 (WSB1), mRNA /cds=p(285,1550) /gb=XM_003131753 /gi=311267923 /ug=Ssc.25169 /len=2544"	GO:0044464//cell part	GO:0005488//binding	GO:0007165//signal transduction	gi|311267924|ref|XP_003131801.1|/0/PREDICTED: WD repeat and SOCS box-containing protein 1-like [Sus scrofa]
gnl|UG|Ssc#S18358760	0	0	6	1.72	3	0.9	"911481 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK454201 /gi=40801415 /ug=Ssc.26545 /len=708"	-	-	-	-
gnl|UG|Ssc#S55265164	2	0.58	0	0	0	0	"FS651294 full-length enriched swine cDNA library, adult back fat Sus scrofa cDNA clone BKFL10045F09 5', mRNA sequence /clone=BKFL10045F09 /clone_end=5' /gb=FS651294 /gi=288260715 /ug=Ssc.77986 /len=521"	-	-	-	-
gnl|UG|Ssc#S46878869	4	1.15	2	0.57	0	0	"PREDICTED: Sus scrofa zinc finger, FYVE domain containing 26 (ZFYVE26), mRNA /cds=p(131,7756) /gb=XM_001926141 /gi=194038460 /ug=Ssc.38848 /len=7762"	GO:0005815//microtubule organizing center	GO:0035091//phosphatidylinositol binding;GO:0046914//transition metal ion binding	GO:0006259//DNA metabolic process	gi|194038461|ref|XP_001926176.1|/0/PREDICTED: zinc finger FYVE domain-containing protein 26 [Sus scrofa]
gnl|UG|Ssc#S58312172	3	0.86	0	0	0	0	"PREDICTED: Sus scrofa ATH1, acid trehalase-like 1 (yeast) (ATHL1), mRNA /cds=p(165,2312) /gb=XM_003124228 /gi=311250753 /ug=Ssc.11542 /len=2646"	-	GO:0016787//hydrolase activity	GO:0044238//primary metabolic process	gi|311250754|ref|XP_003124276.1|/0/PREDICTED: acid trehalase-like protein 1-like [Sus scrofa]
gnl|UG|Ssc#S40083439	237	68.23	362	103.48	132	39.67	"rfcc25b_g21.y1 fcc Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=EW178346 /gi=182508670 /ug=Ssc.62904 /len=358"	-	-	-	-
gnl|UG|Ssc#S46879562	225	64.78	147	42.02	262	78.74	"PREDICTED: Sus scrofa syndecan 2 (SDC2), mRNA /cds=p(676,1284) /gb=XM_001926939 /gi=311253593 /ug=Ssc.12323 /len=3565"	GO:0016021//integral to membrane;GO:0044297//cell body	GO:0019904//protein domain specific binding	GO:0014074//response to purine-containing compound;GO:0009611//response to wounding;GO:0048812//neuron projection morphogenesis	gi|386787|gb|AAA52701.1|/4.93302e-96/heparan sulfate proteoglycan core protein [Homo sapiens]
gnl|UG|Ssc#S35167063	7	2.02	0	0	0	0	"Sus scrofa mRNA, clone:LVRM10044E04, expressed in liver /gb=AK232881 /gi=115552676 /ug=Ssc.21283 /len=1684"	GO:0044429//mitochondrial part	"GO:0016627//oxidoreductase activity, acting on the CH-CH group of donors;GO:0050662//coenzyme binding"	GO:0009063//cellular amino acid catabolic process	"gi|296479444|gb|DAA21559.1|/0/isobutyryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus]"
gnl|UG|Ssc#S55323378	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:BKFL10040H01, expressed in back fat /gb=AK344103 /gi=288781494 /ug=Ssc.31750 /len=1721"	-	-	-	"gi|149049678|gb|EDM02132.1|/2.68901e-172/hypothetical LOC312654 (predicted), isoform CRA_b [Rattus norvegicus]"
gnl|UG|Ssc#S55325249	0	0	3	0.86	0	0	"Sus scrofa mRNA, clone:PTG010064B08, expressed in pituitary gland /gb=AK349402 /gi=288779577 /ug=Ssc.69790 /len=1865"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0001071//nucleic acid binding transcription factor activity;GO:0003677//DNA binding	"GO:0007411//axon guidance;GO:0045596//negative regulation of cell differentiation;GO:0048675//axon extension;GO:0021522//spinal cord motor neuron differentiation;GO:0006351//transcription, DNA-dependent;GO:0001708//cell fate specification"	gi|296475432|gb|DAA17547.1|/0/ISL LIM homeobox 2 [Bos taurus]
gnl|UG|Ssc#S58301068	80	23.03	47	13.43	89	26.75	"PREDICTED: Sus scrofa cullin 4B (CUL4B), mRNA /cds=p(275,2968) /gb=XM_003135333 /gi=311276833 /ug=Ssc.63803 /len=3028"	GO:0080008//CUL4 RING ubiquitin ligase complex;GO:0043231//intracellular membrane-bounded organelle	GO:0019899//enzyme binding	GO:0006259//DNA metabolic process;GO:0019941//modification-dependent protein catabolic process	gi|311276834|ref|XP_003135381.1|/0/PREDICTED: cullin-4B-like [Sus scrofa]
gnl|UG|Ssc#S55324071	0	0	2	0.57	4	1.2	"Sus scrofa mRNA, clone:SMG010099D08, expressed in submaxillary gland /gb=AK350137 /gi=288780801 /ug=Ssc.76455 /len=2070"	-	-	-	gi|311258724|ref|XP_003127750.1|/2.20868e-30/PREDICTED: hypothetical protein LOC100521456 [Sus scrofa]
gnl|UG|Ssc#S58311486	14	4.03	0	0	6	1.8	"PREDICTED: Sus scrofa beta-centractin-like (LOC100511252), mRNA /cds=p(1,1137) /gb=XM_003124919 /gi=311252165 /ug=Ssc.4223 /len=1173"	GO:0005875//microtubule associated complex	GO:0032559	-	gi|311252166|ref|XP_003124967.1|/0/PREDICTED: beta-centractin-like [Sus scrofa]
gnl|UG|Ssc#S58312396	0	0	6	1.72	0	0	"PREDICTED: Sus scrofa amyloid beta (A4) precursor protein-binding, family B, member 3 (APBB3), mRNA /cds=p(278,1729) /gb=XM_003124011 /gi=311250298 /ug=Ssc.54291 /len=2079"	-	-	-	gi|311250299|ref|XP_003124059.1|/0/PREDICTED: amyloid beta A4 precursor protein-binding family B member 3-like [Sus scrofa]
gnl|UG|Ssc#S18387947	19	5.47	37	10.58	35	10.52	"939425 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=CK468060 /gi=40839337 /ug=Ssc.7771 /len=756"	-	-	-	-
gnl|UG|Ssc#S41578629	33	9.5	28	8	19	5.71	"Sus scrofa male-enhanced antigen 1 (MEA1), mRNA /cds=p(130,654) /gb=NM_001110429 /gi=160333768 /ug=Ssc.15581 /len=1311"	-	-	-	-
gnl|UG|Ssc#S23213134	2	0.58	0	0	8	2.4	"Sus scrofa clone Clu_3706.scr.msk.p1.Contig4, mRNA sequence /gb=AY609874 /gi=52351444 /ug=Ssc.8097 /len=2611"	GO:0016020//membrane	GO:0017111//nucleoside-triphosphatase activity;GO:0032561;GO:0005515//protein binding;GO:0032559	"GO:0016192//vesicle-mediated transport;GO:0035556//intracellular signal transduction;GO:0009207;GO:0006351//transcription, DNA-dependent"	gi|115495023|ref|NP_001068967.1|/1.31674e-107/ras-related protein Rab-18 [Bos taurus]
gnl|UG|Ssc#S18309820	4	1.15	7	2	2	0.6	"BP447482 full-length enriched swine cDNA library, adult liver Sus scrofa cDNA clone LVR010045H04 5', mRNA sequence /clone=LVR010045H04 /clone_end=5' /gb=BP447482 /gi=40437549 /ug=Ssc.22951 /len=888"	-	-	-	gi|114050753|ref|NP_001039545.1|/2.9546e-66/protein HP-25 homolog 1 [Bos taurus]
gnl|UG|Ssc#S55322975	26	7.49	10	2.86	10	3.01	"Sus scrofa mRNA, clone:DCI010004F11, expressed in dendritic cells (immature) /gb=AK344307 /gi=288781897 /ug=Ssc.56058 /len=1902"	GO:0031227//intrinsic to endoplasmic reticulum membrane	GO:0048037//cofactor binding;GO:0016832//aldehyde-lyase activity	GO:0008202//steroid metabolic process;GO:0012501//programmed cell death;GO:0001667//ameboidal cell migration;GO:0043436;GO:0048534;GO:0008406//gonad development;GO:0022602//ovulation cycle process;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0009887//organ morphogenesis;GO:0030154//cell differentiation;GO:0048232//male gamete generation;GO:0046519;GO:0035264//multicellular organism growth	gi|311271339|ref|XP_003133112.1|/0/PREDICTED: sphingosine-1-phosphate lyase 1-like isoform 2 [Sus scrofa]
gnl|UG|Ssc#S35170635	0	0	0	0	2	0.6	"Sus scrofa mRNA, clone:LNG010041E02, expressed in lung /gb=AK231880 /gi=115549204 /ug=Ssc.72372 /len=1258"	GO:0043229//intracellular organelle	GO:0005488//binding	GO:0016568//chromatin modification;GO:0008283//cell proliferation;GO:0000087//M phase of mitotic cell cycle	gi|297285620|ref|XP_001088172.2|/9.494e-158/PREDICTED: protein polybromo-1-like isoform 6 [Macaca mulatta]
gnl|UG|Ssc#S46879903	19	5.47	5	1.43	49	14.73	"PREDICTED: Sus scrofa polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like (POLR3GL), mRNA /cds=p(369,1025) /gb=XM_001927775 /gi=194036311 /ug=Ssc.25867 /len=1134"	-	-	-	gi|194210885|ref|XP_001916429.1|/6.38633e-86/PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide G like [Equus caballus]
gnl|UG|Ssc#S58306265	13	3.74	6	1.72	18	5.41	"PREDICTED: Sus scrofa cyclin-dependent kinase 14, transcript variant 2 (CDK14), mRNA /cds=p(115,1470) /gb=XM_003130131 /gi=311264465 /ug=Ssc.49220 /len=2625"	GO:0043231//intracellular membrane-bounded organelle;GO:0000307//cyclin-dependent protein kinase holoenzyme complex;GO:0044444//cytoplasmic part;GO:0016020//membrane	GO:0004674//protein serine/threonine kinase activity;GO:0005515//protein binding;GO:0032559	GO:0022402//cell cycle process;GO:0030111//regulation of Wnt receptor signaling pathway;GO:0006464//protein modification process	gi|281183147|ref|NP_001162462.1|/0/cell division protein kinase 14 [Papio anubis] 
gnl|UG|Ssc#S35170427	26	7.49	8	2.29	19	5.71	"Sus scrofa mRNA, clone:OVRM10081E03, expressed in ovary /gb=AK235434 /gi=115549412 /ug=Ssc.11064 /len=964"	GO:0044424//intracellular part	"GO:0008135//translation factor activity, nucleic acid binding"	GO:0006413//translational initiation;GO:0050896//response to stimulus	gi|62898457|dbj|BAD97168.1|/1.99326e-50/translation factor sui1 homolog [Homo sapiens]
gnl|UG|Ssc#S58304279	13	3.74	3	0.86	23	6.91	"PREDICTED: Sus scrofa WD repeat domain 48, transcript variant 1 (WDR48), mRNA /cds=p(13,2046) /gb=XM_003132119 /gi=311268690 /ug=Ssc.3296 /len=3982"	-	-	-	-
gnl|UG|Ssc#S58314832	2	0.58	5	1.43	11	3.31	"PREDICTED: Sus scrofa synaptosomal-associated protein 23-like, transcript variant 2 (LOC100512755), mRNA /cds=p(179,814) /gb=XM_003121570 /gi=311244908 /ug=Ssc.13493 /len=2216"	GO:0043234//protein complex;GO:0031981//nuclear lumen;GO:0044459//plasma membrane part;GO:0005766;GO:0012506//vesicle membrane;GO:0030141//stored secretory granule;GO:0042598//vesicular fraction	GO:0000149//SNARE binding	GO:0006887//exocytosis;GO:0016044//cellular membrane organization;GO:0048193//Golgi vesicle transport;GO:0065003	gi|311244907|ref|XP_003121617.1|/8.29043e-116/PREDICTED: synaptosomal-associated protein 23-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S23213036	418	120.34	87	24.87	392	117.81	"Sus scrofa clone Clu_5035.scr.msk.p1.Contig3, mRNA sequence /gb=AY609972 /gi=52351542 /ug=Ssc.54017 /len=2705"	GO:0043231//intracellular membrane-bounded organelle;GO:0043234//protein complex	"GO:0030528//transcription regulator activity;GO:0030674//protein binding, bridging;GO:0003676//nucleic acid binding;GO:0019904//protein domain specific binding"	"GO:0032239;GO:0006396//RNA processing;GO:0022402//cell cycle process;GO:0007165//signal transduction;GO:0006351//transcription, DNA-dependent"	"gi|291408909|ref|XP_002720681.1|/1.30725e-142/PREDICTED: KH domain containing, RNA binding, signal transduction associated 1 [Oryctolagus cuniculus]"
gnl|UG|Ssc#S26724260	0	0	2	0.57	0	0	"AJ960344 KN404_2 Sus scrofa cDNA clone C0007755c14 3', mRNA sequence /clone=C0007755c14 /clone_end=3' /gb=AJ960344 /gi=74377160 /ug=Ssc.32556 /len=842"	-	-	-	-
gnl|UG|Ssc#S58307739	5	1.44	0	0	4	1.2	"PREDICTED: Sus scrofa zinc finger protein 410-like (LOC100512059), mRNA /cds=p(243,1676) /gb=XM_003128661 /gi=311261331 /ug=Ssc.18214 /len=2405"	GO:0043231//intracellular membrane-bounded organelle	GO:0046914//transition metal ion binding;GO:0003676//nucleic acid binding	GO:0010467//gene expression	gi|311261332|ref|XP_003128709.1|/0/PREDICTED: zinc finger protein 410-like [Sus scrofa]
gnl|UG|Ssc#S58311235	8	2.3	4	1.14	4	1.2	"PREDICTED: Sus scrofa rho-related GTP-binding protein RhoQ-like (LOC100523840), mRNA /cds=p(340,957) /gb=XM_003125166 /gi=311252677 /ug=Ssc.9000 /len=4429"	GO:0015629//actin cytoskeleton;GO:0044425//membrane part;GO:0044444//cytoplasmic part	GO:0032561;GO:0017111//nucleoside-triphosphatase activity;GO:0019904//protein domain specific binding	GO:0007265//Ras protein signal transduction;GO:0032868//response to insulin stimulus;GO:0065008;GO:0010829//negative regulation of glucose transport;GO:0031346//positive regulation of cell projection organization;GO:0009207;GO:0007169//transmembrane receptor protein tyrosine kinase signaling pathway;GO:0030036//actin cytoskeleton organization;GO:0010551//regulation of gene-specific transcription from RNA polymerase II promoter;GO:0009966//regulation of signal transduction;GO:0010828//positive regulation of glucose transport;GO:0048523//negative regulation of cellular process	"gi|148706671|gb|EDL38618.1|/1.68523e-121/ras homolog gene family, member Q [Mus musculus]"
gnl|UG|Ssc#S58300922	0	0	0	0	0	0	"PREDICTED: Sus scrofa plasma membrane calcium-transporting ATPase 3-like, transcript variant 4 (LOC100520061), mRNA /cds=p(1,3759) /gb=XM_003135479 /gi=311277162 /ug=Ssc.80381 /len=3759"	GO:0031224//intrinsic to membrane	GO:0043169//cation binding;GO:0019829//cation-transporting ATPase activity;GO:0019904//protein domain specific binding;GO:0032559	GO:0001775//cell activation;GO:0009206;GO:0006811//ion transport;GO:0007599//hemostasis	gi|311277163|ref|XP_003135527.1|/0/PREDICTED: plasma membrane calcium-transporting ATPase 3-like isoform 4 [Sus scrofa]
gnl|UG|Ssc#S20938827	5	1.44	10	2.86	5	1.5	"AJ650550 CSEQRAN19 Sus scrofa cDNA clone C0003275_K16, mRNA sequence /clone=C0003275_K16 /gb=AJ650550 /gi=49327395 /ug=Ssc.74087 /len=473"	-	-	-	"gi|149063180|gb|EDM13503.1|/2.18515e-15/splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila), isoform CRA_a [Rattus norvegicus]"
gnl|UG|Ssc#S58304564	4	1.15	0	0	2	0.6	"PREDICTED: Sus scrofa TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) (TSR1), mRNA /cds=p(7,2421) /gb=XM_003131832 /gi=311268084 /ug=Ssc.22443 /len=3973"	GO:0031981//nuclear lumen	GO:0005488//binding	GO:0042254//ribosome biogenesis	gi|311268085|ref|XP_003131880.1|/0/PREDICTED: pre-rRNA-processing protein TSR1 homolog [Sus scrofa]
gnl|UG|Ssc#S23759081	0	0	0	0	3	0.9	"1116291 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence /clone_end=5' /gb=DN116700 /gi=59810960 /ug=Ssc.1629 /len=884"	-	-	-	-
gnl|UG|Ssc#S35329251	3	0.86	0	0	0	0	"SusFleck_BFN_0017_0020_5_pCNS_E01 SusFleck Backfat Normalized Sus scrofa cDNA clone 0017_0020_E01 5', mRNA sequence /clone=0017_0020_E01 /clone_end=5' /gb=DT327643 /gi=116339751 /ug=Ssc.16891 /len=884"	-	-	-	-
gnl|UG|Ssc#S46879872	4	1.15	0	0	7	2.1	"PREDICTED: Sus scrofa WD repeat domain 3 (WDR3), mRNA /cds=p(47,2878) /gb=XM_001929178 /gi=311254496 /ug=Ssc.15629 /len=3477"	-	-	-	-
gnl|UG|Ssc#S18558354	0	0	0	0	2	0.6	"BX927005 Sus Scrofa library (scan) Sus scrofa cDNA clone scan0013.g.15 5prim, mRNA sequence /clone=scan0013.g.15 /clone_end=5' /gb=BX927005 /gi=90230986 /ug=Ssc.85158 /len=874"	GO:0012505//endomembrane system;GO:0043234//protein complex;GO:0044444//cytoplasmic part;GO:0031981//nuclear lumen	GO:0005488//binding	GO:0048193//Golgi vesicle transport	gi|149704723|ref|XP_001492536.1|/3.49438e-132/PREDICTED: component of oligomeric golgi complex 5 [Equus caballus]
gnl|UG|Ssc#S58304354	2	0.58	6	1.72	10	3.01	"PREDICTED: Sus scrofa 5'(3')-deoxyribonucleotidase, mitochondrial-like (LOC100513046), mRNA /cds=p(1,687) /gb=XM_003132047 /gi=311268513 /ug=Ssc.33806 /len=687"	GO:0044429//mitochondrial part	GO:0043169//cation binding;GO:0008252//nucleotidase activity	GO:0006259//DNA metabolic process;GO:0006796//phosphate metabolic process;GO:0006213//pyrimidine nucleoside metabolic process;GO:0009178;GO:0009112	"gi|311268514|ref|XP_003132095.1|/9.10627e-114/PREDICTED: 5'(3')-deoxyribonucleotidase, mitochondrial-like [Sus scrofa]"
gnl|UG|Ssc#S46880581	0	0	0	0	7	2.1	"PREDICTED: Sus scrofa GTP cyclohydrolase 1 feedback regulatory protein-like, transcript variant 1 (LOC100153745), mRNA /cds=p(323,577) /gb=XM_001929399 /gi=311244986 /ug=Ssc.24698 /len=1179"	GO:0032991//macromolecular complex;GO:0043005//neuron projection;GO:0000267//cell fraction;GO:0005635//nuclear envelope;GO:0048770	GO:0030234//enzyme regulator activity;GO:0019899//enzyme binding;GO:0031406//carboxylic acid binding;GO:0003824//catalytic activity	GO:0051259//protein oligomerization;GO:0001505//regulation of neurotransmitter levels;GO:0031326;GO:0044271//cellular nitrogen compound biosynthetic process;GO:0043095//regulation of GTP cyclohydrolase I activity	gi|194034891|ref|XP_001929434.1|/9.26449e-43/PREDICTED: GTP cyclohydrolase 1 feedback regulatory protein-like isoform 1 [Sus scrofa]
gnl|UG|Ssc#S58312889	0	0	0	0	2	0.6	"PREDICTED: Sus scrofa microtubule-associated serine/threonine-protein kinase 3-like (LOC100521606), mRNA /cds=p(1,1803) /gb=XM_003123515 /gi=311249285 /ug=Ssc.32350 /len=3346"	-	GO:0005488//binding	-	gi|311249286|ref|XP_003123563.1|/0/PREDICTED: microtubule-associated serine/threonine-protein kinase 3-like [Sus scrofa]