BASE
PREFIX :
PREFIX ncit:
PREFIX skos:
PREFIX cito:
PREFIX dcat:
PREFIX dctypes:
PREFIX dct:
PREFIX foaf:
PREFIX freq:
PREFIX idot:
PREFIX lexvo:
PREFIX pav:
PREFIX prov:
PREFIX rdf:
PREFIX rdfs:
PREFIX schemaorg:
PREFIX sd:
PREFIX sio:
PREFIX xsd:
PREFIX void:
PREFIX void-ext:
###Summary Level (Complete)
:chembl
rdf:type dctypes:Dataset;
dct:title "ChEMBL"@en ;
dct:alternative "ChEMBLdb"@en ;
dct:description "ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."@en ;
dct:publisher :ebi ;
foaf:page ;
schemaorg:logo ;
dct:license ;
dct:rights """The data in ChEMBL is covered by the Creative Commons By Attribution. Under the -BY clause, we request attribution for subsequent use of ChEMBL. For publications using ChEMBL data, the primary current citation is:
A. Gaulton, L. Bellis, J. Chambers, M. Davies, A. Hersey, Y. Light, S. McGlinchey, R. Akhtar, A.P. Bento, B. Al-Lazikani, D. Michalovich, & J.P. Overington (2012) 'ChEMBL: A Large-scale Bioactivity Database For Chemical Biology and Drug Discovery' Nucl. Acids Res. Database Issue. 40 D1100-1107 DOI:10.1093/nar/gkr777 PMID:21948594
If ChEMBL is incorporated into other works, we ask that the ChEMBL IDs are preserved, and that the release number of ChEMBL is clearly displayed."""@en ;
dcat:theme ncit:C48807 ; #chemical
dcat:keyword "assay"^^xsd:string, "chemical"^^xsd:string ;
dct:references ;
rdfs:seeAlso ;
cito:citesAsAuthority ;
dct:hasPart :chembl17_rdf_molecule_dataset, :chembl17_rdf_target_dataset ;
#Identifiers
idot:preferredPrefix "chembl" ;
idot:alternatePrefix "chembldb" ;
#Provenance and Change
pav:hasCurrentVersion :chembl17 ;
dct:accrualPeriodicity freq:quarterly;
#Availability/Distributions
dcat:accessURL ;
void:sparqlEndpoint ;
.
:ebi
foaf:page ;
.
###Version Level (Complete)
:chembl17
rdf:type dctypes:Dataset;
dct:title "ChEMBL Version 17"@en ;
dct:alternative "ChEMBLdb17"@en ;
dct:description "ChEMBL17 is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."@en ;
dct:created "2013-08"^^xsd:gYearMonth;
pav:createdOn "2013-08"^^xsd:gYearMonth;
pav:authoredOn "2013-07"^^xsd:gYearMonth;
pav:curatedOn "2013-07"^^xsd:gYearMonth;
dct:creator :ebi ;
dct:contributor :annaGaulton ;
pav:createdBy ;
pav:authoredBy :annaGaulton ;
pav:curatedBy :annaGaulton ;
dct:issued "2013-08-29"^^xsd:date ;
dct:publisher :ebi ;
foaf:page ;
schemaorg:logo ;
dct:license ;
dct:rights """The data in ChEMBL is covered by the Creative Commons By Attribution. Under the -BY clause, we request attribution for subsequent use of ChEMBL. For publications using ChEMBL data, the primary current citation is:
A. Gaulton, L. Bellis, J. Chambers, M. Davies, A. Hersey, Y. Light, S. McGlinchey, R. Akhtar, A.P. Bento, B. Al-Lazikani, D. Michalovich, & J.P. Overington (2012) 'ChEMBL: A Large-scale Bioactivity Database For Chemical Biology and Drug Discovery' Nucl. Acids Res. Database Issue. 40 D1100-1107 DOI:10.1093/nar/gkr777 PMID:21948594
If ChEMBL is incorporated into other works, we ask that the ChEMBL IDs are preserved, and that the release number of ChEMBL is clearly displayed."""@en ;
dct:language ;
dcat:theme ncit:C48807 ;
dcat:keyword "assay"^^xsd:string, "chemical"^^xsd:string ;
dct:conformsTo ;
dct:references ;
rdfs:seeAlso ;
cito:citesAsAuthority ;
dct:hasPart :chembl17_rdf_molecule_dataset, :chembl17_rdf_target_dataset ;
#Identifiers
idot:preferredPrefix "chembl" ;
idot:alternatePrefix "chembldb" ;
#Provenance and Change
pav:version "17"^^xsd:string, "17.0" ;
dct:isVersionOf :chembl ;
pav:previousVersion :chembl16 ;
dct:source :pubchem-bioassay-09-01-2014 ;
pav:retrievedFrom :pubchem-bioassay-09-01-2014 ;
prov:wasDerivedFrom :pubchem-bioassay-09-01-2014 ;
#Availability/Distributions
dcat:distribution :chembl17db, :chembl17rdf ;
dcat:accessURL ;
dcat:landingPage ;
.
:annaGaulton foaf:name "Anna Gaulton" .
###Distribution (non-RDF) description (Complete)
:chembl17db
a dctypes:Dataset, dcat:Distribution ;
dct:title "ChEMBL Version 17 Database Distribution"@en ;
dct:alternative "ChEMBLdb17db"@en ;
dct:description "ChEMBL17 database distribution is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."@en ;
dct:created "2013-08"^^xsd:gYearMonth;
pav:createdOn "2013-08"^^xsd:gYearMonth;
pav:authoredOn "2013-07"^^xsd:gYearMonth;
pav:curatedOn "2013-07"^^xsd:gYearMonth;
dct:creator :ebi ;
dct:contributor :annaGaulton ;
pav:createdBy ;
pav:authoredBy :annaGaulton ;
pav:curatedBy :annaGaulton ;
dct:issued "2013-08-29"^^xsd:date ;
dct:publisher :ebi ;
foaf:page ;
schemaorg:logo ;
dct:license ;
dct:rights """The data in ChEMBL is covered by the Creative Commons By Attribution. Under the -BY clause, we request attribution for subsequent use of ChEMBL. For publications using ChEMBL data, the primary current citation is:
A. Gaulton, L. Bellis, J. Chambers, M. Davies, A. Hersey, Y. Light, S. McGlinchey, R. Akhtar, A.P. Bento, B. Al-Lazikani, D. Michalovich, & J.P. Overington (2012) 'ChEMBL: A Large-scale Bioactivity Database For Chemical Biology and Drug Discovery' Nucl. Acids Res. Database Issue. 40 D1100-1107 DOI:10.1093/nar/gkr777 PMID:21948594
If ChEMBL is incorporated into other works, we ask that the ChEMBL IDs are preserved, and that the release number of ChEMBL is clearly displayed."""@en ;
dct:language ;
dcat:theme ncit:C48807 ;
dcat:keyword "assay"^^xsd:string, "chemical"^^xsd:string ;
##Vocabulary does not make sense for a non-RDF dataset
dct:conformsTo ;
dct:references ;
rdfs:seeAlso ;
cito:citesAsAuthority ;
#Identifiers
idot:preferredPrefix "chembl" ;
idot:alternatePrefix "chembldb" ;
idot:identifierPattern "CHEMBL\\d+"^^xsd:string ;
###void:uriRegexPattern does not make sense for a non-RDF resource
idot:accessPattern "http://bio2rdf.org/chembl", "http://identifiers.org/chembl.compound/", "http://linkedchemistry.info/chembl/chemblid", "http://www.ebi.ac.uk/chembl/compound/inspect/" ;
idot:exampleIdentifier "CHEMBL25"^^xsd:string ;
###void:exampleResource does not make sense for a non-RDF resource
#Provenance and Change
###sio:has-data-item-in not used for non-RDF resources
pav:version "17"^^xsd:string, "17.0" ;
pav:previousVersion :chembl16db ;
dct:source :pubchem-bioassay-09-01-2014 ;
pav:retrievedFrom ;
prov:wasDerivedFrom ;
pav:createdWith ;
#Availability/Distributions
dct:format "application/sql" ;
dcat:accessURL ;
dcat:landingPage ;
dcat:downloadURL ;
dcat:byteSize "861443887"^^xsd:decimal ;
###void:dataDump does not make sense for a non-RDF resource
#Statistics
### Current definitions do not make sense for a non-RDF resource
.
###RDF Distribution description (Complete)
:chembl17rdf
a dctypes:Dataset, dcat:Distribution, void:Dataset ;
dct:title "ChEMBL Version 17 RDF Distribution"@en ;
dct:alternative "ChEMBLdb17rdf"@en ;
dct:description "ChEMBL17 RDF distribution is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature."@en ;
dct:created "2013-08"^^xsd:gYearMonth;
pav:createdOn "2013-08"^^xsd:gYearMonth;
pav:authoredOn "2013-07"^^xsd:gYearMonth;
pav:curatedOn "2013-07"^^xsd:gYearMonth;
dct:creator :ebi ;
dct:contributor :annaGaulton ;
pav:createdBy ;
pav:authoredBy :annaGaulton ;
pav:curatedBy :annaGaulton ;
dct:issued "2013-08-29"^^xsd:date ;
dct:publisher :ebi ;
foaf:page ;
schemaorg:logo ;
dct:license ;
dct:rights """The data in ChEMBL is covered by the Creative Commons By Attribution. Under the -BY clause, we request attribution for subsequent use of ChEMBL. For publications using ChEMBL data, the primary current citation is:
A. Gaulton, L. Bellis, J. Chambers, M. Davies, A. Hersey, Y. Light, S. McGlinchey, R. Akhtar, A.P. Bento, B. Al-Lazikani, D. Michalovich, & J.P. Overington (2012) 'ChEMBL: A Large-scale Bioactivity Database For Chemical Biology and Drug Discovery' Nucl. Acids Res. Database Issue. 40 D1100-1107 DOI:10.1093/nar/gkr777 PMID:21948594
If ChEMBL is incorporated into other works, we ask that the ChEMBL IDs are preserved, and that the release number of ChEMBL is clearly displayed."""@en ;
dct:language ;
dcat:theme ncit:C48807 ;
dcat:keyword "assay"^^xsd:string, "chemical"^^xsd:string ;
void:vocabulary , , ;
dct:conformsTo ;
dct:references ;
rdfs:seeAlso ;
cito:citesAsAuthority ;
void:subset :chembl17_rdf_molecule_dataset, :chembl17_rdf_target_dataset ;
#Identifiers
idot:preferredPrefix "chembl" ;
idot:alternatePrefix "chembldb" ;
idot:identifierPattern "CHEMBL\\d+"^^xsd:string ;
void:uriRegexPattern "http://rdf.ebi.ac.uk/resource/chembl/target/CHEMBL\\d+" ;
idot:accessPattern "http://bio2rdf.org/chembl", "http://identifiers.org/chembl.compound/", "http://linkedchemistry.info/chembl/chemblid", "http://www.ebi.ac.uk/chembl/compound/inspect/" ;
idot:exampleIdentifier "CHEMBL25"^^xsd:string ;
void:exampleResource ;
#Provenance and Change
#Only one data item given for the purpose of the example, all resources should be listed
sio:has-data-item ;
pav:version "17"^^xsd:string, "17.0" ;
pav:previousVersion :chembl16rdf ;
dct:source :pubchem-bioassay-09-01-2014 ;
pav:retrievedFrom :pubchem-bioassay-09-01-2014 ;
prov:wasDerivedFrom :pubchem-bioassay-09-01-2014 ;
pav:createdWith :chembl-sql2rdf-exporter-v1 ;
#Availability/Distributions
dct:format , "application/gzip", "text/turtle" ;
dcat:accessURL ;
dcat:landingPage ;
dcat:downloadURL ;
void:dataDump ;
void:subset :chembl17-uniprot-exactMatch-linkset ;
#Statistics: Note that numbers are taken from Bio2RDF release 3
void:triples "409942525"^^xsd:integer ;
void:entities "50061452"^^xsd:integer ;
void:distinctSubjects "50062405"^^xsd:integer ;
void:properties "141"^^xsd:integer ;
void:distinctObjects "50128234"^^xsd:integer ;
#Number of unique classes
void:classPartition [
void:class rdfs:Class ;
void:distinctSubjects "110"^^xsd:integer
] ;
#Number of unique literals
void:classPartition [
void:class rdfs:Literal ;
void:distinctSubjects "58067345"^^xsd:integer
] ;
#Number of graphs
void:classPartition [
void:class sd:Graph ;
void:distinctSubjects "8"^^xsd:integer
] ;
#Enhanced Statistics
#Class and number of instances
void:classPartition [
void:class ;
void:distinctSubjects "12419715"^^xsd:integer
] ;
# Property and number of triples
void:propertyPartition [
void:property ;
void:triples "37259145"^^xsd:integer
] ;
# Property, triples, and number of unique subjects of a certain type
void:propertyPartition [
void:property ;
void:triples "12419715"^^xsd:integer ;
void:classPartition [
void:class ;
void:distinctSubjects "12419715"^^xsd:integer ;
]] ;
# Property, triples, and number of unique objects of a certain type
void:propertyPartition [
void:property ;
void:triples "37259145"^^xsd:integer ;
void-ext:objectClassPartition [
void:class ;
void:distinctObjects "12419715"^^xsd:integer
]] ;
# Property, triples, and number of unique literals
void:propertyPartition [
void:property ;
void:triples "1360455"^^xsd:integer ;
void-ext:objectClassPartition [
void:class rdfs:Literal;
void:distinctObjects "1359785"^^xsd:integer
]] ;
# Property, triples, and number of unique subjects and objects of a certain type
void:propertyPartition [
void:property ;
void:triples "12419715"^^xsd:integer ;
void:classPartition [
void:class ;
void:distinctSubjects "12419715"^^xsd:integer ;
];
void-ext:objectClassPartition [
void:class ;
void:distinctObjects "1042288"^^xsd:integer ;
]] ;
.
idot:primarySource true ;
dct:format "text/html" ;
dct:publisher ;
idot:accessIdentifierPattern "^http://www.ebi.ac.uk/chembl/compound/inspect/CHEMBL\\d+" ;
a idot:AccessPattern .
dct:format "text/html" ;
idot:accessIdentifierPattern "^http://identifiers.org/chembl.compound/CHEMBL\\d+" ;
a idot:AccessPattern .
dct:format "application/rdf+xml" ;
dct:publisher ;
idot:accessIdentifierPattern "^http://bio2rdf.org/chembl:CHEMBL\\d+" ;
a idot:AccessPattern .
dct:format "application/rdf+xml" ;
idot:accessIdentifierPattern "^http://linkedchemistry.info/chembl/CHEMBL\\d+" ;
a idot:AccessPattern .
:chembl17-uniprot-exactMatch-linkset
###Linkset specific metadata
a void:Linkset ;
void:subjectsTarget :chembl-rdf ;
void:objectsTarget ;
void:linkPredicate skos:exactMatch ;
void:triples "6367"^^xsd:integer ;
##Metadata for a RDF distribution
a dctypes:Dataset, dcat:Distribution, void:Dataset ;
dct:title "ChEMBL Target Component to UniProt Protein Exact Match Linkset"@en ;
dct:alternative "ChEMBLTargetCmpt2UniProtEMLS"@en ;
dct:description "A linkset connecting ChEMBL target components with their corresponding UniProt protein entry where the match is deemed to be exact."@en ;
dct:created "2013-08"^^xsd:gYearMonth;
pav:createdOn "2013-08"^^xsd:gYearMonth;
pav:authoredOn "2013-07"^^xsd:gYearMonth;
pav:curatedOn "2013-07"^^xsd:gYearMonth;
dct:creator :ebi ;
dct:contributor :annaGaulton ;
pav:createdBy ;
pav:authoredBy :annaGaulton ;
pav:curatedBy :annaGaulton ;
dct:issued "2013-08-29"^^xsd:date ;
dct:publisher :ebi ;
foaf:page ;
schemaorg:logo ;
dct:license ;
dct:rights """The data in ChEMBL is covered by the Creative Commons By Attribution. Under the -BY clause, we request attribution for subsequent use of ChEMBL. For publications using ChEMBL data, the primary current citation is:
A. Gaulton, L. Bellis, J. Chambers, M. Davies, A. Hersey, Y. Light, S. McGlinchey, R. Akhtar, A.P. Bento, B. Al-Lazikani, D. Michalovich, & J.P. Overington (2012) 'ChEMBL: A Large-scale Bioactivity Database For Chemical Biology and Drug Discovery' Nucl. Acids Res. Database Issue. 40 D1100-1107 DOI:10.1093/nar/gkr777 PMID:21948594
If ChEMBL is incorporated into other works, we ask that the ChEMBL IDs are preserved, and that the release number of ChEMBL is clearly displayed."""@en ;
dct:language ;
dcat:theme ncit:C17021 ;
dcat:keyword "assay"^^xsd:string, "protein"^^xsd:string ;
void:vocabulary , , ;
dct:conformsTo ;
dct:references ;
rdfs:seeAlso ;
cito:citesAsAuthority ;
#Identifiers
idot:preferredPrefix "chembl" ;
idot:alternatePrefix "chembldb" ;
idot:identifierPattern "CHEMBL\\d+"^^xsd:string ;
void:uriRegexPattern "http://rdf.ebi.ac.uk/resource/chembl/target/CHEMBL\\d+" ;
idot:accessPattern "http://bio2rdf.org/chembl", "http://identifiers.org/chembl.compound/", "http://linkedchemistry.info/chembl/chemblid", "http://www.ebi.ac.uk/chembl/compound/inspect/" ;
idot:exampleIdentifier "CHEMBL_TC_4803"^^xsd:string ;
void:exampleResource ;
#Provenance and Change
#Only one data item given for the purpose of the example, all resources should be listed
sio:has-data-item ;
pav:version "17"^^xsd:string, "17.0" ;
pav:previousVersion :chembl16-uniprot-exactMatch-linkset ;
dct:source :pubchem-bioassay-09-01-2014 ;
pav:retrievedFrom :pubchem-bioassay-09-01-2014 ;
prov:wasDerivedFrom :pubchem-bioassay-09-01-2014 ;
pav:createdWith :chembl-sql2rdf-exporter-v1 ;
#Availability/Distributions
dct:format , "application/gzip", "text/turtle" ;
dcat:accessURL ;
dcat:landingPage ;
dcat:downloadURL ;
void:dataDump ;
.