#NEXUS [written Sun Sep 04 08:11:59 ECT 2016 by Mesquite version 3.10 (build 765) at Edwins-MacBook-Pro-2.local/192.168.100.5] BEGIN TAXA; DIMENSIONS NTAX=27; TAXLABELS Outgroup Cycloderma_aubryi Pelochelys_bibroni Cyclanorbis_elegans Rafetus_euphraticus Apalone_ferox Nilssonia_formosa Cycloderma_frenatum Nilssonia_gangetica Nilssonia_hurum Chitra_indica Apalone_mutica Lissemys_punctata Cyclanorbis_senegalensis Pelodiscus_sinensis Apalone_spinifera Palea_steindachneri Dogania_subplana Trionyx_triunguis Gilmoremys_lancensis Plastomeus_thomasii Hutchemys_rememdium Hutchemys_arctochelys Hutchemys_tetraneton Hutchemys_sterea Palaeoamyda_messeliana Amyda_cartilaginea ; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=83; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5"; CHARSTATELABELS 1 1., 2 2., 3 3., 4 4., 5 5., 6 7., 7 8., 8 9., 9 10., 10 12., 11 13., 12 14., 13 15., 14 16., 15 17., 16 18., 17 19., 18 20., 19 21., 20 23., 21 24., 22 25., 23 29., 24 32., 25 34.change, 26 36., 27 41., 28 42_aut, 29 46_aut, 30 48., 31 49., 32 51.aut, 33 53., 34 54., 35 58., 36 59., 37 60., 38 62.aut, 39 63.aut, 40 64., 41 65., 42 66.aut, 43 67.aut, 44 68., 45 69., 46 70.play, 47 71., 48 72., 49 73., 50 74., 51 75., 52 76., 53 78., 54 87., 55 88., 56 90., 57 91., 58 92., 59 93., 60 95., 61 98., 62 100., 63 107., 64 109., 65 112., 66 113., 67 67., 68 68., 69 69., 70 70., 71 71., 72 72., 73 73., 74 74., 75 75., 76 76., 77 77., 78 78., 79 79., 80 80., 81 81., 82 82., 83 83. ; MATRIX Outgroup 1111111111111111111111111111111111111111111111111111111111111111110000000000?000000 Cycloderma_aubryi 212141112222121121111211322112214221311111222-1211111122112122121100000000101000000 Pelochelys_bibroni 32224113111211321122111131111112211121113113102121111223221111212200000000002000000 Cyclanorbis_elegans 222141142122121111221111311212213221311111112-1221122112112121222100000000101000000 Rafetus_euphraticus 32224124111312321122111111212111211131121111101132122213311121221200000000002000000 Apalone_ferox 322241231113324211221121113111112111311111111011321221133111112212000000{0 1}0{0 1}01000000 Nilssonia_formosa 22224113111111211122111231211221211131131111111131111---2112212---0000000000?000000 Cycloderma_frenatum 211141112122122121111211321112214221311122132-1221121122112122121100000000101000000 Nilssonia_gangetica 32214112111222311222111111211221211131131111111121121112311211211200000000002000000 Nilssonia_hurum 32214112111122311222111121311221211131131111112131111113111211211200000000002000000 Chitra_indica 32324113111111311122112132111111211121112113103130011223221121212200000000002000000 Apalone_mutica 422241211112324311222122213111212111311111112-1122222112211111212200000000{0 1}01000000 Lissemys_punctata 21113211222412212111121121111211222131111112111111111112112121121200000000111000000 Cyclanorbis_senegalensis 322142102125-4-111111111322111113221311111132-1211111112112122222100000000102000000 Pelodiscus_sinensis 42224111111232421322211221311221221231131111121131121112211111211200000000002000000 Apalone_spinifera 322241211113324311222121113111112111311211112-1132222112311111212200000000{0 1}01000000 Palea_steindachneri 222241131112122113222111313112212112311311112-3131211--221111-2---0000000000?000000 Dogania_subplana 422241131111202313222111213112212112321211111-1121221113211211211200000000002000000 Trionyx_triunguis 32224113111312321122111111311221211131211111101121?22112211111211200000000002000010 Gilmoremys_lancensis 42?1411?121312?1??2211?23231{1 2}22132223111?1112-3131111?????????????0000000?10211?110 Plastomeus_thomasii 42?141111224-3-1?11111?11???12-122223211111??????-211??????1??????000000111021001?1 Hutchemys_rememdium 42?14111122312212?2111????????????????????????????????????????21??11110011201?????{0 1} Hutchemys_arctochelys 42?14111122312212?1111????????????????????????????????????????????10111111211?????1 Hutchemys_tetraneton 42?1411?11231221???121????????????????????????????????????????????1101001?20??????? Hutchemys_sterea 32?1411112231251211121????????????????????????????????????????????1001001120??????1 Palaeoamyda_messeliana 322141121115124213?211?11?21?????????1??1?1???????12121321?2?1?11200000?00002???000 Amyda_cartilaginea 32214112111211221322111111211221211121121112102131121213211211211200000000002000000 ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 83; END; BEGIN TREES; Title 'Trees from "Joyce&Lyson_2011_Gilmoremys"'; ID 0156f54fc4601; LINK Taxa = Taxa; TRANSLATE [0] n0 Outgroup, [1] n1 Cycloderma_aubryi, [2] n2 Pelochelys_bibroni, [3] n3 Cyclanorbis_elegans, [4] n4 Rafetus_euphraticus, [5] n5 Apalone_ferox, [6] n6 Nilssonia_formosa, [7] n7 Cycloderma_frenatum, [8] n8 Nilssonia_gangetica, [9] n9 Nilssonia_hurum, [10] n10 Chitra_indica, [11] n11 Apalone_mutica, [12] n12 Lissemys_punctata, [13] n13 Cyclanorbis_senegalensis, [14] n14 Pelodiscus_sinensis, [15] n15 Apalone_spinifera, [16] n16 Palea_steindachneri, [17] n17 Dogania_subplana, [18] n18 Trionyx_triunguis, [19] n19 Gilmoremys_lancensis, [20] n20 Plastomeus_thomasii, [21] n21 Hutchemys_rememdium, [22] n22 Hutchemys_arctochelys, [23] n23 Hutchemys_tetraneton, [24] n24 Hutchemys_sterea, [25] n25 Palaeoamyda_messeliana, [26] n26 Amyda_cartilaginea; TREE 'UNTITLED+++' = (n0,(((((((n6,n9),n8),n17),n16),n14),(((n5,n15,n11),n4),((n10,n2),n18))),(n20,(((n7,n1),n12),(n13,n3))))); END; BEGIN NOTES; TEXT CHARACTER = 17 TEXT = 'check_scoring_for_cycloderma_and_perhaps_change_scoring_of_meylan,_deep_layer_is_what_matters'; TEXT CHARACTER = 25 TEXT = looks_into_this_when_we_have_skull_data; END; BEGIN MacClade; Version 4.0 84; LastModified -927654803; FileSettings editor '1' '1' '15' '1'; Singles 110; Editor 0001000111111110010001001 '0' '36' Geneva '9' '150' '1' all; EditorPosition '44' '65' '547' '1205'; TreeWindowPosition '78' '421' '636' '949'; ListWindow Characters closed Geneva '9' '50' '10' '273' '352' 000; ListWindow Taxa closed Geneva '9' '368' '174' '273' '278' 100000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490'; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharSets closed Geneva '9' '50' '10' '276' '490'; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ChartWindowPosition '52' '30' '818' '1380'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols & / 00 ? 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