#NEXUS [written Mon Feb 27 11:43:21 CET 2017 by Mesquite version 3.2 (build 801) at LAPTOP-94PCVD87/192.168.10.113] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=29; TAXLABELS Sphenodon Agama Calotes Pogona Furcifer Chamaeleo Liolaemus_grav Liolaemus_tenuis Uta Anolis Eublepharis Chondrodactylus Gehyra Strophurus Amalosia Mabuya Zootoca Calyptommatus Nothobachia Varanus_rosenbergi Thamnophis Vipera Python Boaedon Tropidurus Iguana Tarentola Varanus_panoptes Varanus_indicus ; END; BEGIN CHARACTERS[!Data_saved_from_TNT]; TITLE Character_Matrix; DIMENSIONS NCHAR=190; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2"; MATRIX Sphenodon 222222220022001222222222222122222211?????????222222222????????????222222222?2?222222222?2?2222222222?2?22???????????????222222222?2?222?222222222?2?222?1222222222?2?222?22222222222?2?222?222 Agama 2222222221221002221122222222222222222222222212222222222222222222222222222222222222222222222222222222222222222222222222202222222222222201222222222222222222222222222222222222222222222222222222 Calotes ?2?2?22?202?2012?20002?222222?2222222?22222102?222222122?2222222222?22222222222?222222222212?2222222222222?22222222222222?222222222222102?2222222222222122?22222222222222222?22222222222222222 Pogona ?????????????????????????????????????????????????????2?????????2?1????????2?22????????2?221????????2?2211????????2?22111????????2?222222????????2?2222221????????2?22222222????????2?222222222 Furcifer 2222222220222012221222221221222122112222222222222222221222222222222222222222222222222222222222222222222222222222222222222222222222222221222222222222222112222222222222222222222222222222222222 Chamaeleo 2202012011212222011102122212222222222222222222222222222222222222222222222222222222222222221222222222222112222222222222222222222222222221222222222222222222222222222222222222222222222222222222 Liolaemus_grav 2202222010222122222222120200222222222222222202222222200222222222222222222222222222222222222222222222222212222222222222112222222222222000222222222222211122222222222222222222222222222222222222 Liolaemus_tenuis 2202122010222222222202121200222222222222222202222222222222222222222222222222222222222222221222222222222112222222222222222222222222210000222222222222222222222222222222222222222222222222222221 Uta 222222222122200222000222112222222222222222220222222222222222222222???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Anolis ?????????????????????????????????????????????????????????????????2??????????????????????22???????????10?0??????????22?12??????????22?020??????????22?2222??????????22?22222??????????22?222222 Eublepharis ?????????????????2?????1???0??2???22??2???221??2???2222??2???22221??2???222222??2???2222221??2???22222222??2???222222110??2???2222221101??2???22222222222??2???222222222222??2???2222222222221 Chondrodactylus ?????????????????2?????1???0??2???12??2???222??2???2222??2???22221??2???222222??2???2222222??2???22222222??2???222222100??2???2222222222??2???22222222221??2???222222222222??2???2222222222222 Gehyra 2222202202220102222222212220222222122222222222222222221222222222112222222222222222222222222222222222222002222222222222222222222222222020222222222222222222222222222222222222222222222222222222 Strophurus ?????????????????????????????????????????????????????????????????1??????????22??????????222??????????2210??????????22222??????????222221??????????2222222??????????22222222??????????222222222 Amalosia ??????????????????????????????????????????????????????2?????????21?????????222?????????2221?????????22222?????????222110?????????2222212?????????22222121?????????222222222?????????2222222222 Mabuya 2212222110222122220202222222222222212221212002222222222222222222212222222222222222222222222222222222222212222222222222222222222222222222222222222222222222222222222222222222222222222222222222 Zootoca 2212112111211112222222222221222222112222222222222222222222222222212222222222222222222222222222222222222222222222222222212222222222222222222222222222222212222222222222222222222222222222222222 Calyptommatus ???????????????????????????????????1????????????????22????????22?1???????22?22???????22?222???????22?1100???????22?22222???????22?220020???????22?2222222???????22?22222221???????22?222222222 Nothobachia ?????????????????????????????????????????????????????????????????0??????????22??????????221??????????1200?????????????????????????22112???????????22222?2??????????22222?21??????????22222?222 Varanus_rosenbergi ????????????????????????????????????????????????????0?????????1??2???????2??22???????2??222???????2??2220???????2??22100???????2??222122???????2??2221221???????2??22222222???????2??222222222 Thamnophis 2202012222222202122002222222????????22222221?22222222?2???????????22222222?22??????????????22222222?22?2?22222222?22?2?122222222?22?1?00?????????????????22222222?22?2?222?22222222?22?2?222?2 Vipera 2222202222220102222122222222????????22222222?22222222?2???????2???22222222?22??????????????22222222?22?2?22222222?22?2?122222222?22?2?22?????????????????22222222?22?2?222?22222222?22?2?222?2 Python ???????????????????????????????????????????????????????????????-?-????????2?2-????????-?---???????????0--????????2?2-2-2????????2?2-0-20????????-?-------????????2?2-2-212-????????2?2-1-202-0 Boaedon ???????????????????????????????????-????????-??????1-?????????----???????2-?2-???????------???????1-?1-0-???????2-?2-1-2???????2-?2-0-20???????----------???????2-?2-2-222-???????2-?2-1-212-0 Tropidurus ??????????????2???????????0??????0????????????????0????????21?22?2????22?22?22????22?22?222????21?22?2100???????????????????22?22?22222?????22?22?22222?2????22?22?22222?22????22?22?222222222 Iguana ??????????????????????????????????????????????2????????????????????2??????2?22?2??????2?220???????????????2??????2?22222?2??????2?220120?2??????2?2202202?2??????2?22222222?2??????2?222222222 Tarentola ?????????????????????????????????????????????????????1?????2??22?2????????????????2??22?22????????????0?0???????????????????2??22?21?02?????2??22?22?02?2????2??22?22?22?22????2??22?22?22?221 Varanus_panoptes ???????????????????????????????????0????????????????01???????????????????22?2????????22?2?0???????01?1?00???????22?2?222???????22?2?0120???????22?2?22222???????22?2?222221???????22?2?2222222 Varanus_indicus ??????????????????????????????????????????????????????????????22?2???????????????????22?22????????????0?0???????22?22?22???????22?22?221???????22?22?2211???????22?22?22222???????22?22?222222 ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = ord: 1 - 190; EXSET * UNTITLED = ; WTSET * UNTITLED = 1: 1 - 190 ; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 190; END; BEGIN NOTES; SU C = 1 N = selected B = TRUE; SU C = 2 N = selected B = TRUE; SU C = 3 N = selected B = TRUE; SU C = 4 N = selected B = TRUE; SU C = 5 N = selected B = TRUE; SU C = 6 N = selected B = TRUE; SU C = 7 N = selected B = TRUE; SU C = 8 N = selected B = TRUE; SU C = 9 N = selected B = TRUE; SU C = 10 N = selected B = TRUE; SU C = 11 N = selected B = TRUE; SU C = 12 N = selected B = TRUE; SU C = 13 N = selected B = TRUE; SU C = 14 N = selected B = TRUE; SU C = 15 N = selected B = TRUE; SU C = 16 N = selected B = TRUE; SU C = 17 N = selected B = TRUE; SU C = 18 N = selected B = TRUE; SU C = 19 N = selected B = TRUE; SU C = 20 N = selected B = TRUE; SU C = 21 N = selected B = TRUE; SU C = 22 N = selected B = TRUE; SU C = 23 N = selected B = TRUE; SU C = 24 N = selected B = TRUE; SU C = 25 N = selected B = TRUE; SU C = 26 N = selected B = TRUE; SU C = 27 N = selected B = TRUE; SU C = 28 N = selected B = TRUE; SU C = 29 N = selected B = TRUE; SU C = 30 N = selected B = TRUE; SU C = 31 N = selected B = TRUE; SU C = 32 N = selected B = TRUE; SU C = 33 N = selected B = TRUE; SU C = 34 N = selected B = TRUE; SU C = 35 N = selected B = TRUE; SU C = 36 N = selected B = TRUE; SU C = 37 N = selected B = TRUE; SU C = 38 N = selected B = TRUE; SU C = 39 N = selected B = TRUE; SU C = 40 N = selected B = TRUE; SU C = 41 N = selected B = TRUE; SU C = 42 N = selected B = TRUE; SU C = 43 N = selected B = TRUE; SU C = 44 N = selected B = TRUE; SU C = 45 N = selected B = TRUE; SU C = 46 N = selected B = TRUE; SU C = 47 N = selected B = TRUE; SU C = 48 N = selected B = TRUE; SU C = 49 N = selected B = TRUE; SU C = 50 N = selected B = TRUE; SU C = 51 N = selected B = TRUE; SU C = 52 N = selected B = TRUE; SU C = 53 N = selected B = TRUE; SU C = 54 N = selected B = TRUE; SU C = 55 N = selected B = TRUE; SU C = 56 N = selected B = TRUE; SU C = 57 N = selected B = TRUE; SU C = 58 N = selected B = TRUE; SU C = 59 N = selected B = TRUE; SU C = 60 N = selected B = TRUE; SU C = 61 N = selected B = TRUE; SU C = 62 N = selected B = TRUE; SU C = 63 N = selected B = TRUE; SU C = 64 N = selected B = TRUE; SU C = 65 N = selected B = TRUE; SU C = 66 N = selected B = TRUE; SU C = 67 N = selected B = TRUE; SU C = 68 N = selected B = TRUE; SU C = 69 N = selected B = TRUE; SU C = 70 N = selected B = TRUE; SU C = 71 N = selected B = TRUE; SU C = 72 N = selected B = TRUE; SU C = 73 N = selected B = TRUE; SU C = 74 N = selected B = TRUE; SU C = 75 N = selected B = TRUE; SU C = 76 N = selected B = TRUE; SU C = 77 N = selected B = TRUE; SU C = 78 N = selected B = TRUE; SU C = 79 N = selected B = TRUE; SU C = 80 N = selected B = TRUE; SU C = 81 N = selected B = TRUE; SU C = 82 N = selected B = TRUE; SU C = 83 N = selected B = TRUE; SU C = 84 N = selected B = TRUE; SU C = 85 N = selected B = TRUE; SU C = 86 N = selected B = TRUE; SU C = 87 N = selected B = TRUE; SU C = 88 N = selected B = TRUE; SU C = 89 N = selected B = TRUE; SU C = 90 N = selected B = TRUE; SU C = 91 N = selected B = TRUE; SU C = 92 N = selected B = TRUE; SU C = 93 N = selected B = TRUE; SU C = 94 N = selected B = TRUE; SU C = 95 N = selected B = TRUE; SU C = 96 N = selected B = TRUE; SU C = 97 N = selected B = TRUE; SU C = 98 N = selected B = TRUE; SU C = 99 N = selected B = TRUE; SU C = 100 N = selected B = TRUE; SU C = 101 N = selected B = TRUE; SU C = 102 N = selected B = TRUE; SU C = 103 N = selected B = TRUE; SU C = 104 N = selected B = TRUE; SU C = 105 N = selected B = TRUE; SU C = 106 N = selected B = TRUE; SU C = 107 N = selected B = TRUE; SU C = 108 N = selected B = TRUE; SU C = 109 N = selected B = TRUE; SU C = 110 N = selected B = TRUE; SU C = 111 N = selected B = TRUE; SU C = 112 N = selected B = TRUE; SU C = 113 N = selected B = TRUE; SU C = 114 N = selected B = TRUE; SU C = 115 N = selected B = TRUE; SU C = 116 N = selected B = TRUE; SU C = 117 N = selected B = TRUE; SU C = 118 N = selected B = TRUE; SU C = 119 N = selected B = TRUE; SU C = 120 N = selected B = TRUE; SU C = 121 N = selected B = TRUE; SU C = 122 N = selected B = TRUE; SU C = 123 N = selected B = TRUE; SU C = 124 N = selected B = TRUE; SU C = 125 N = selected B = TRUE; SU C = 126 N = selected B = TRUE; SU C = 127 N = selected B = TRUE; SU C = 128 N = selected B = TRUE; SU C = 129 N = selected B = TRUE; SU C = 130 N = selected B = TRUE; SU C = 131 N = selected B = TRUE; SU C = 132 N = selected B = TRUE; SU C = 133 N = selected B = TRUE; SU C = 134 N = selected B = TRUE; SU C = 135 N = selected B = TRUE; SU C = 136 N = selected B = TRUE; SU C = 137 N = selected B = TRUE; SU C = 138 N = selected B = TRUE; SU C = 139 N = selected B = TRUE; SU C = 140 N = selected B = TRUE; SU C = 141 N = selected B = TRUE; SU C = 142 N = selected B = TRUE; SU C = 143 N = selected B = TRUE; SU C = 144 N = selected B = TRUE; SU C = 145 N = selected B = TRUE; SU C = 146 N = selected B = TRUE; SU C = 147 N = selected B = TRUE; SU C = 148 N = selected B = TRUE; SU C = 149 N = selected B = TRUE; SU C = 150 N = selected B = TRUE; SU C = 151 N = selected B = TRUE; SU C = 152 N = selected B = TRUE; SU C = 153 N = selected B = TRUE; SU C = 154 N = selected B = TRUE; SU C = 155 N = selected B = TRUE; SU C = 156 N = selected B = TRUE; SU C = 157 N = selected B = TRUE; SU C = 158 N = selected B = TRUE; SU C = 159 N = selected B = TRUE; SU C = 160 N = selected B = TRUE; SU C = 161 N = selected B = TRUE; SU C = 162 N = selected B = TRUE; SU C = 163 N = selected B = TRUE; SU C = 164 N = selected B = TRUE; SU C = 165 N = selected B = TRUE; SU C = 166 N = selected B = TRUE; SU C = 167 N = selected B = TRUE; SU C = 168 N = selected B = TRUE; SU C = 169 N = selected B = TRUE; SU C = 170 N = selected B = TRUE; SU C = 171 N = selected B = TRUE; SU C = 172 N = selected B = TRUE; SU C = 173 N = selected B = TRUE; SU C = 174 N = selected B = TRUE; SU C = 175 N = selected B = TRUE; SU C = 176 N = selected B = TRUE; SU C = 177 N = selected B = TRUE; SU C = 178 N = selected B = TRUE; SU C = 179 N = selected B = TRUE; SU C = 180 N = selected B = TRUE; SU C = 181 N = selected B = TRUE; SU C = 182 N = selected B = TRUE; SU C = 183 N = selected B = TRUE; SU C = 184 N = selected B = TRUE; SU C = 185 N = selected B = TRUE; SU C = 186 N = selected B = TRUE; SU C = 187 N = selected B = TRUE; SU C = 188 N = selected B = TRUE; SU C = 189 N = selected B = TRUE; SU C = 190 N = selected B = TRUE; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1488192201805; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3356879795444953846; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 24 23 26 25 27 28; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3622554721771572608; tell It; setSelected 1 - 190; attachments ; endTell; mqVersion 320; checksumv 0 3 3037863297 null getNumChars 190 numChars 190 getNumTaxa 29 numTaxa 29 short true bits 7 states 7 sumSquaresStatesOnly 44300.0 sumSquares 44300.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1362 669; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3356879795444953846 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3356879795444953846; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 962 597; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3356879795444953846 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSourceEditMode #mesquite.trees.StoredTrees.StoredTrees; tell It; laxMode; setTreeBlock -2147483647; toggleUseWeights off; endTell; setAssignedID 2228.1458210702478.4105161842343711457; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 962 597; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((((11,(27,(13,12))),(15,14)),(((17,(18,19)),16),((((22,24),21),23),((28,20),29)))),(((((25,9),(8,7)),26),10),(((2,4),3),(5,6)))),1);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; getInfoPanel; tell It; btspOpen true; apOpen false; endTell; toggleInfoPanel off; togglePrintName on; showWindow; newAssistant #mesquite.ancstates.TraceCharacterHistory.TraceCharacterHistory; tell It; suspend ; setDisplayMode #mesquite.ancstates.ShadeStatesOnTree.ShadeStatesOnTree; tell It; toggleLabels off; togglePredictions off; toggleGray off; endTell; setHistorySource #mesquite.ancstates.RecAncestralStates.RecAncestralStates; tell It; getCharacterSource #mesquite.charMatrices.CharSrcCoordObed.CharSrcCoordObed; tell It; setCharacterSource #mesquite.charMatrices.StoredCharacters.StoredCharacters; tell It; setDataSet #3622554721771572608; endTell; endTell; setMethod #mesquite.parsimony.ParsAncestralStates.ParsAncestralStates; tell It; setModelSource #mesquite.parsimony.CurrentParsModels.CurrentParsModels; toggleMPRsMode off; endTell; toggleShowSelectedOnly off; endTell; setCharacter 136; setMapping 1; toggleShowLegend on; setColorMode 0; toggleWeights on; setInitialOffsetX 4; setInitialOffsetY -215; setLegendWidth 142; setLegendHeight 180; resume ; endTell; newAssistant #mesquite.ancstates.TraceAllCharacters.TraceAllCharacters; tell It; toggleByCharacters on; toggleSelectedOnly on; toggleSelectedCharsOnly off; toggleShowTerminals off; getCharSource #mesquite.charMatrices.CharMatrixCoordIndep.CharMatrixCoordIndep; tell It; setCharacterSource #mesquite.charMatrices.StoredMatrices.StoredMatrices; tell It; setDataSet #3622554721771572608; endTell; endTell; getReconstructor #mesquite.ancstates.AncestralStatesAll.AncestralStatesAll; tell It; setMethod #mesquite.parsimony.ParsAncestralStates.ParsAncestralStates; tell It; setModelSource #mesquite.parsimony.CurrentParsModels.CurrentParsModels; toggleMPRsMode off; endTell; endTell; desuppress; endTell; newAssistant #mesquite.ancstates.TraceAllCharacters.TraceAllCharacters; tell It; toggleByCharacters on; toggleSelectedOnly on; toggleSelectedCharsOnly off; toggleShowTerminals off; getCharSource #mesquite.charMatrices.CharMatrixCoordIndep.CharMatrixCoordIndep; tell It; setCharacterSource #mesquite.charMatrices.StoredMatrices.StoredMatrices; tell It; setDataSet #3622554721771572608; endTell; endTell; getReconstructor #mesquite.ancstates.AncestralStatesAll.AncestralStatesAll; tell It; setMethod #mesquite.stochchar.MargProbAncStates.MargProbAncStates; tell It; setModelSource #mesquite.stochchar.CurrentProbModels.CurrentProbModels; getEmployee #mesquite.stochchar.zMargLikeCateg.zMargLikeCateg; tell It; setReportMode Proportional_Likelihoods; setRootMode Use_Root_State_Frequencies_as_Prior; setDecision 2.0; setUnderflowCheckFreq 2; endTell; endTell; endTell; desuppress; endTell; endTell; setEditMode 'Edited, based on Edited, based on Edited, based on Default symmetrical+++ [Stored Trees]'; desuppressEPCResponseNORESET; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; newValue #mesquite.trees.TreeValueUsingMatrix.TreeValueUsingMatrix; tell It; getEmployee #mesquite.parsimony.TreelengthForMatrix.TreelengthForMatrix; tell It; getEmployee #mesquite.parsimony.ParsCharSteps.ParsCharSteps; tell It; setModelSource #mesquite.parsimony.CurrentParsModels.CurrentParsModels; endTell; endTell; getEmployee #mesquite.charMatrices.CharMatrixCoordIndep.CharMatrixCoordIndep; tell It; setCharacterSource #mesquite.charMatrices.StoredMatrices.StoredMatrices; tell It; setDataSet #3622554721771572608; endTell; endTell; endTell; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3622554721771572608 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 962 597; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #3622554721771572608 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.parsimony.CharListParsModels.CharListParsModels; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 962 597; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;