BioProject SRA #Reads Total # viral reads Total % viral reads #ABPV %ABPV #BQCV %BQCV #CBPV %CBPV #DWV A %DWV A #DWV B %DWV B #DWV C %DWV C #IAPV %IAPV #KBV %KBV #LSV %LSV #SBV %SBV #SBPV %SBPV Organism Tissue Project description PRJNA104931 SRR445999 407,851,485 104,886,029 25.72% 0 0.00% 0 0.00% 0 0.00% 104,885,679 25.72% 350 0.00% 109 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446000 563,455,446 65,758,803 11.67% 0 0.00% 12 0.00% 0 0.00% 65,758,386 11.67% 405 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446001 289,841,584 62,581,365 21.59% 0 0.00% 0 0.00% 0 0.00% 62,581,119 21.59% 246 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446002 294,643,564 70,533,304 23.94% 0 0.00% 3 0.00% 0 0.00% 70,532,780 23.94% 521 0.00% 124 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446003 264,425,743 37,313,096 14.11% 0 0.00% 11 0.00% 0 0.00% 37,312,918 14.11% 167 0.00% 53 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446004 431,039,604 69,046,565 16.02% 0 0.00% 11 0.00% 0 0.00% 69,046,554 16.02% 0 0.00% 35 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446005 341,306,931 86,663,721 25.39% 0 0.00% 0 0.00% 0 0.00% 86,663,463 25.39% 258 0.00% 157 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446006 368,207,921 48,338,483 13.13% 0 0.00% 1 0.00% 0 0.00% 48,338,290 13.13% 192 0.00% 57 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446007 231,079,208 48,730,763 21.09% 0 0.00% 4 0.00% 0 0.00% 48,730,357 21.09% 402 0.00% 56 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446008 313,910,891 71,664,740 22.83% 0 0.00% 93 0.00% 0 0.00% 71,664,436 22.83% 211 0.00% 66 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446009 342,673,267 65,952,603 19.25% 0 0.00% 1 0.00% 0 0.00% 65,952,434 19.25% 168 0.00% 38 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA104931 SRR446010 265,891,089 63,355,110 23.83% 0 0.00% 5 0.00% 0 0.00% 63,354,959 23.83% 146 0.00% 52 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Reversible switching between epigenetic states in honeybee behavioral subcastes PRJNA122153 SRR042523 8,583,333 2,160 0.03% 261 0.00% 130 0.00% 15 0.00% 146 0.00% 276 0.00% 27 0.00% 168 0.00% 186 0.00% 93 0.00% 665 0.01% 220 0.00% Apis mellifera Genome-wide evolutionary analysis of eukaryotic DNA methylation PRJNA175445 SRR584147 30,536,313 4,569,504 14.96% 912 0.00% 510 0.00% 202 0.00% 4,561,801 14.94% 2,561 0.01% 10132 0.03% 1,107 0.00% 755 0.00% 329 0.00% 550 0.00% 777 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR584156 11,513,514 469,143 4.07% 157 0.00% 93 0.00% 30 0.00% 466,539 4.05% 1,688 0.01% 1075 0.01% 193 0.00% 124 0.00% 61 0.00% 119 0.00% 139 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR584160 16,180,791 3,223,994 19.92% 423 0.00% 294 0.00% 96 0.00% 3,219,961 19.90% 1,448 0.01% 4483 0.03% 550 0.00% 408 0.00% 133 0.00% 322 0.00% 359 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR584163 23,139,665 3,821,524 16.52% 767 0.00% 355 0.00% 129 0.00% 3,815,768 16.49% 2,003 0.01% 6569 0.03% 818 0.00% 608 0.00% 224 0.00% 350 0.00% 502 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR584169 21,318,436 1,240,761 5.82% 760 0.00% 439 0.00% 149 0.00% 1,235,397 5.79% 1,204 0.01% 4476 0.02% 877 0.00% 614 0.00% 227 0.00% 444 0.00% 650 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR584172 20,603,352 3,869,143 18.78% 726 0.00% 427 0.00% 108 0.00% 3,862,094 18.74% 3,360 0.02% 8,275 0.04% 729 0.00% 527 0.00% 235 0.00% 379 0.00% 558 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR584177 18,511,364 2,752,157 14.87% 492 0.00% 309 0.00% 93 0.00% 2,747,822 14.84% 1,236 0.01% 4,991 0.03% 703 0.00% 427 0.00% 205 0.00% 428 0.00% 442 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR584184 49,206,704 2,849,954 5.79% 1,671 0.00% 929 0.00% 275 0.00% 2,837,545 5.77% 2,905 0.01% 9,339 0.02% 2,084 0.00% 1,378 0.00% 550 0.00% 1,115 0.00% 1,502 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR584187 29,541,899 2,463,667 8.34% 948 0.00% 451 0.00% 164 0.00% 2,456,245 8.31% 2,223 0.01% 7806 0.03% 1,239 0.00% 782 0.00% 330 0.00% 545 0.00% 740 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR584189 20,250,000 2,362,204 11.67% 624 0.00% 354 0.00% 146 0.00% 2,356,266 11.64% 2,065 0.01% 6,745 0.03% 899 0.00% 506 0.00% 237 0.00% 524 0.00% 583 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR584192 16,458,101 2,960,390 17.99% 448 0.00% 262 0.00% 84 0.00% 2,955,396 17.96% 2,365 0.01% 5,094 0.03% 573 0.00% 393 0.00% 173 0.00% 260 0.00% 436 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA175445 SRR585833 16,837,989 2,551,527 15.15% 532 0.00% 251 0.00% 85 0.00% 2,546,943 15.13% 1,754 0.01% 5,116 0.03% 575 0.00% 467 0.00% 189 0.00% 299 0.00% 432 0.00% Apis mellifera Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA240064) PRJNA192195 SRR771439 6,400,000 33,265 0.52% 268 0.00% 73 0.00% 20 0.00% 1,877 0.03% 116 0.00% 136 0.00% 30,559 0.48% 236 0.00% 23 0.00% 73 0.00% 20 0.00% Apis mellifera MicroRNAs in honey bee caste determination PRJNA192195 SRR771440 6,942,857 93,527 1.35% 838 0.01% 276 0.00% 30 0.00% 5,298 0.08% 275 0.00% 336 0.00% 85,944 1.24% 651 0.01% 11 0.00% 194 0.00% 10 0.00% Apis mellifera MicroRNAs in honey bee caste determination PRJNA192448 SRR771525 3,457,143 1,722 0.05% 7 0.00% 0 0.00% 0 0.00% 2 0.00% 17 0.00% 671 0.02% 6 0.00% 3 0.00% 0 0.00% 482 0.01% 1,205 0.03% Apis mellifera Feeding with miR-184 affects the mRNA expression profile of queen larvae (honey bee) PRJNA192448 SRR771526 3,542,857 1,579 0.04% 14 0.00% 0 0.00% 0 0.00% 3 0.00% 38 0.00% 575 0.02% 10 0.00% 8 0.00% 0 0.00% 642 0.02% 864 0.02% Apis mellifera Feeding with miR-184 affects the mRNA expression profile of queen larvae (honey bee) PRJNA193691 SRR789761 170,643,564 566 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 566 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera carnica Brain mRNA-Seq of brain tissue from honeybee (Apis mellifera) drones (male), workers (female) and queens (female). PRJNA193691 SRR789764 146,564,356 1,344 0.00% 0 0.00% 12 0.00% 0 0.00% 0 0.00% 1,332 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera carnica Brain mRNA-Seq of brain tissue from honeybee (Apis mellifera) drones (male), workers (female) and queens (female). PRJNA194157 SRR801788 27,316,832 28,956 0.11% 0 0.00% 27,173 0.10% 2 0.00% 1,484 0.01% 115 0.00% 0 0.00% 0 0.00% 0 0.00% 1 0.00% 181 0.00% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR801844 26,683,168 7,195 0.03% 1 0.00% 6,955 0.03% 0 0.00% 38 0.00% 18 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 183 0.00% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR802386 32,168,317 11,385 0.04% 0 0.00% 11,140 0.03% 0 0.00% 140 0.00% 59 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 46 0.00% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR802538 34,514,851 999,331 2.90% 0 0.00% 999,068 2.89% 0 0.00% 165 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 66 0.00% 32 0.00% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR802556 33,871,287 2,785 0.01% 2 0.00% 46 0.00% 0 0.00% 1 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 4 0.00% 2,732 0.01% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR802899 23,485,149 1,214 0.01% 1 0.00% 1,055 0.00% 0 0.00% 58 0.00% 20 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 80 0.00% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR806508 87,732,673 62,977 0.07% 3 0.00% 61,162 0.07% 0 0.00% 230 0.00% 72 0.00% 0 0.00% 0 0.00% 0 0.00% 974 0.00% 536 0.00% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR806550 118,435,644 655,003 0.55% 1 0.00% 2,680 0.00% 0 0.00% 117 0.00% 28 0.00% 0 0.00% 0 0.00% 0 0.00% 29 0.00% 652,148 0.55% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR806693 81,811,881 51,165 0.06% 12 0.00% 49,973 0.06% 0 0.00% 325 0.00% 2 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 853 0.00% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR806701 61,524,752 8,520 0.01% 247 0.00% 7,474 0.01% 0 0.00% 442 0.00% 51 0.00% 0 0.00% 3 0.00% 4 0.00% 1 0.00% 298 0.00% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR806709 86,049,505 856,580 1.00% 0 0.00% 696,903 0.81% 0 0.00% 14 0.00% 2 0.00% 0 0.00% 0 0.00% 0 0.00% 4 0.00% 159,657 0.19% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA194157 SRR806711 86,049,505 856,580 1.00% 0 0.00% 696,903 0.81% 0 0.00% 14 0.00% 2 0.00% 0 0.00% 0 0.00% 0 0.00% 4 0.00% 159,657 0.19% 0 0.00% Apis mellifera Transcriptional profiling of honeybee abdomens, digestive tracts and sting glands PRJNA207482 SRR893021 29,720,000 5,892 0.02% 0 0.00% 7 0.00% 0 0.00% 4,531 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 1,354 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893022 28,800,000 5,732 0.02% 0 0.00% 15 0.00% 0 0.00% 4,424 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 1,293 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893023 27,180,000 1,536 0.01% 0 0.00% 0 0.00% 0 0.00% 878 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 658 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893024 26,400,000 1,451 0.01% 0 0.00% 2 0.00% 0 0.00% 865 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 584 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893025 26,820,000 4,324 0.02% 0 0.00% 1 0.00% 0 0.00% 2,362 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 1,961 0.01% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893026 26,290,000 4,129 0.02% 0 0.00% 0 0.00% 0 0.00% 2,183 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 1,946 0.01% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893027 34,030,000 657 0.00% 0 0.00% 5 0.00% 0 0.00% 603 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 49 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893028 33,070,000 602 0.00% 0 0.00% 10 0.00% 0 0.00% 525 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 67 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893033 21,920,000 3,604 0.02% 0 0.00% 0 0.00% 0 0.00% 3,038 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 566 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893034 21,290,000 3,446 0.02% 0 0.00% 0 0.00% 0 0.00% 2,815 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 631 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893035 35,380,000 8,147 0.02% 0 0.00% 0 0.00% 0 0.00% 7,921 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 226 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893036 34,410,000 7,624 0.02% 0 0.00% 0 0.00% 0 0.00% 7,425 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 199 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893037 28,400,000 89,717 0.32% 0 0.00% 0 0.00% 0 0.00% 7,168 0.03% 0 0.00% 2 0.00% 0 0.00% 0 0.00% 0 0.00% 82,549 0.29% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893038 27,450,000 87,246 0.32% 0 0.00% 0 0.00% 0 0.00% 6,731 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 80,515 0.29% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893039 32,140,000 1,840 0.01% 0 0.00% 0 0.00% 0 0.00% 1,707 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 133 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893040 31,190,000 1,845 0.01% 0 0.00% 5 0.00% 0 0.00% 1,712 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 128 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893041 30,540,000 6,959 0.02% 0 0.00% 0 0.00% 0 0.00% 6,524 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 435 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893042 29,510,000 6,486 0.02% 0 0.00% 0 0.00% 0 0.00% 6,052 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 434 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893043 33,770,000 4,950 0.01% 0 0.00% 0 0.00% 0 0.00% 4,600 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 350 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA207482 SRR893044 32,760,000 4,456 0.01% 0 0.00% 0 0.00% 0 0.00% 4,123 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 333 0.00% 0 0.00% Apis mellifera Apis mellifera KD dnmt3, effect of DNA methylation on alternative splicing PRJNA209400 SRR922440 94,178,218 13,223 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 13,223 0.01% 0 0.00% Apis mellifera carnica Apis mellifera carnica Transcriptome or Gene expression of Varroa resistant and non-resitant colonies PRJNA211831 SRR935177 55,870,000 520 0.00% 0 0.00% 0 0.00% 520 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Transcriptional profiling of Apis mellifera brains from three developmental castes PRJNA219484 SRR989674 5,130,000 1,684,344 32.83% 0 0.00% 0 0.00% 0 0.00% 1,684,330 32.83% 14 0.00% 3 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera scutellata head Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees PRJNA219484 SRR989676 5,540,000 2,177,657 39.31% 0 0.00% 0 0.00% 0 0.00% 2,177,636 39.31% 21 0.00% 18 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera head Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees PRJNA219484 SRR989677 10,600,000 2,924 0.03% 0 0.00% 0 0.00% 0 0.00% 2,924 0.03% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera head Intronic Non-CG DNA Hydroxymethylation and Alternative mRNA Splicing in Honey Bees PRJNA235974 SRR1380970 26,762,376 892 0.00% 0 0.00% 0 0.00% 0 0.00% 184 0.00% 0 0.00% 0 0.00% 147 0.00% 0 0.00% 0 0.00% 561 0.00% 0 0.00% Apis cerana brain Apis cerana Genome sequencing and assembly PRJNA235974 SRR1380976 27,396,040 244,352 0.89% 0 0.00% 0 0.00% 0 0.00% 196 0.00% 0 0.00% 0 0.00% 226,229 0.83% 0 0.00% 0 0.00% 17,927 0.07% 0 0.00% Apis cerana antennae Apis cerana Genome sequencing and assembly PRJNA235974 SRR1380979 26,831,683 2,035 0.01% 0 0.00% 0 0.00% 0 0.00% 145 0.00% 0 0.00% 0 0.00% 21 0.00% 0 0.00% 0 0.00% 1,869 0.01% 0 0.00% Apis cerana hypopharyngeal gland Apis cerana Genome sequencing and assembly PRJNA235974 SRR1380984 50,049,505 53,144 0.11% 0 0.00% 4,435 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 14,089 0.03% 0 0.00% 0 0.00% 34,620 0.07% 0 0.00% Apis cerana gut Apis cerana Genome sequencing and assembly PRJNA235974 SRR1386316 26,019,802 418,943 1.61% 0 0.00% 0 0.00% 0 0.00% 418,931 1.61% 1 0.00% 6 0.00% 8 0.00% 0 0.00% 0 0.00% 3 0.00% 0 0.00% Apis mellifera brain Apis cerana Genome sequencing and assembly PRJNA235974 SRR1388774 118,851,485 159,392 0.13% 0 0.00% 1,141 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 1,683 0.00% 0 0.00% 0 0.00% 156,568 0.13% 0 0.00% Apis cerana fat body Apis cerana Genome sequencing and assembly PRJNA235974 SRR1406762 167,811,881 37,864 0.02% 0 0.00% 132 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 5,303 0.00% 0 0.00% 0 0.00% 32,429 0.02% 0 0.00% Apis cerana venom gland Apis cerana Genome sequencing and assembly PRJNA235974 SRR1407793 26,623,762 244,398 0.92% 0 0.00% 0 0.00% 0 0.00% 244,387 0.92% 0 0.00% 0 0.00% 10 0.00% 0 0.00% 0 0.00% 1 0.00% 0 0.00% Apis mellifera hypopharyngeal gland Apis cerana Genome sequencing and assembly PRJNA235974 SRR1408090 24,772,277 3,212,394 12.97% 0 0.00% 0 0.00% 0 0.00% 3,212,375 12.97% 14 0.00% 29 0.00% 5 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera antennae Apis cerana Genome sequencing and assembly PRJNA235974 SRR1653580 74,287,129 2,530,346 3.41% 0 0.00% 4 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 2,530,342 3.41% 0 0.00% Apis cerana Apis cerana Genome sequencing and assembly PRJNA235974 SRR1653592 47,069,307 2,888 0.01% 0 0.00% 0 0.00% 0 0.00% 2,155 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 733 0.00% 0 0.00% Apis cerana Apis cerana Genome sequencing and assembly PRJNA235974 SRR1653605 48,564,356 159,105 0.33% 0 0.00% 0 0.00% 0 0.00% 2,403 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 156,702 0.32% 0 0.00% Apis cerana Apis cerana Genome sequencing and assembly PRJNA238833 SRR1182310 49,140,000 3,016,792 6.14% 2 0.00% 584 0.00% 0 0.00% 2,971,300 6.05% 44,886 0.09% 0 0.00% 0 0.00% 0 0.00% 1 0.00% 19 0.00% 0 0.00% Apis mellifera mellifera Midgut Apis mellifera nurse midgut transcriptome PRJNA238833 SRR1182312 41,540,000 2,760,922 6.65% 40 0.00% 632 0.00% 0 0.00% 2,758,021 6.64% 1,997 0.00% 13 0.00% 6 0.00% 0 0.00% 2 0.00% 224 0.00% 0 0.00% Apis mellifera mellifera Midgut Apis mellifera nurse midgut transcriptome PRJNA238833 SRR1182313 71,960,000 1,658,181 2.30% 9 0.00% 1,652,203 2.30% 0 0.00% 5,399 0.01% 517 0.00% 0 0.00% 1 0.00% 0 0.00% 0 0.00% 52 0.00% 0 0.00% Apis mellifera mellifera Midgut Apis mellifera nurse midgut transcriptome PRJNA240064 SRR1182528 16,458,101 2,960,390 17.99% 448 0.00% 262 0.00% 84 0.00% 2,955,396 17.96% 2,365 0.01% 5,094 0.03% 573 0.00% 393 0.00% 173 0.00% 260 0.00% 436 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182529 20,250,000 2,362,204 11.67% 624 0.00% 354 0.00% 146 0.00% 2,356,266 11.64% 2,065 0.01% 6,745 0.03% 899 0.00% 506 0.00% 237 0.00% 524 0.00% 583 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182578 29,541,899 2,463,667 8.34% 948 0.00% 451 0.00% 164 0.00% 2,456,245 8.31% 2,223 0.01% 7,806 0.03% 1,239 0.00% 782 0.00% 330 0.00% 545 0.00% 740 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182579 20,603,352 3,869,145 18.78% 726 0.00% 427 0.00% 108 0.00% 3,862,096 18.74% 3,360 0.02% 8,275 0.04% 729 0.00% 527 0.00% 235 0.00% 379 0.00% 558 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182580 30,536,313 4,569,504 14.96% 912 0.00% 510 0.00% 202 0.00% 4,561,801 14.94% 2,561 0.01% 10,132 0.03% 1,107 0.00% 755 0.00% 329 0.00% 550 0.00% 777 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182581 11,513,514 1,887,795 16.40% 505 0.00% 250 0.00% 84 0.00% 1,883,598 16.36% 1,301 0.01% 3,172 0.03% 692 0.01% 381 0.00% 143 0.00% 383 0.00% 458 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182637 49,206,704 2,849,954 5.79% 1,671 0.00% 929 0.00% 275 0.00% 2,837,545 5.77% 2,905 0.01% 9,339 0.02% 2,084 0.00% 1,378 0.00% 550 0.00% 1,115 0.00% 1,502 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182638 18,511,364 2,752,157 14.87% 492 0.00% 309 0.00% 93 0.00% 2,747,822 14.84% 1,236 0.01% 4,991 0.03% 703 0.00% 427 0.00% 205 0.00% 428 0.00% 442 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182639 16,837,989 2,551,527 15.15% 532 0.00% 251 0.00% 85 0.00% 2,546,943 15.13% 1,754 0.01% 5,116 0.03% 575 0.00% 467 0.00% 189 0.00% 299 0.00% 432 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182640 21,318,436 1,240,763 5.82% 760 0.00% 439 0.00% 149 0.00% 1,235,399 5.79% 1,204 0.01% 4,476 0.02% 877 0.00% 614 0.00% 227 0.00% 444 0.00% 650 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182641 23,139,665 3,821,524 16.52% 767 0.00% 355 0.00% 129 0.00% 3,815,768 16.49% 2,003 0.01% 6,569 0.03% 818 0.00% 608 0.00% 224 0.00% 350 0.00% 502 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA240064 SRR1182642 16,180,791 3,223,994 19.92% 423 0.00% 294 0.00% 96 0.00% 3,219,961 19.90% 1,448 0.01% 4,483 0.03% 550 0.00% 408 0.00% 133 0.00% 322 0.00% 359 0.00% Apis mellifera fat body Transcriptional changes occuring in the fat body of 3d and 8d worker bees fed either a control or pollen-restricted diet. (Duplicate of PRJNA175445) PRJNA243651 SRR1239302 61,140,000 22,381,901 36.61% 11 0.00% 0 0.00% 0 0.00% 20,274,153 33.16% 2,107,737 3.45% 147 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Antennae Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239303 69,960,000 614,550 0.88% 10 0.00% 2 0.00% 0 0.00% 614,262 0.88% 271 0.00% 3 0.00% 0 0.00% 0 0.00% 0 0.00% 5 0.00% 0 0.00% Apis mellifera Antennae Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239304 65,020,000 1,161,492 1.79% 12 0.00% 2 0.00% 0 0.00% 1,161,039 1.79% 436 0.00% 9 0.00% 0 0.00% 0 0.00% 0 0.00% 3 0.00% 0 0.00% Apis mellifera Antennae Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239305 64,900,000 935,211 1.44% 110,856 0.17% 6 0.00% 0 0.00% 824,051 1.27% 253 0.00% 1 0.00% 1 0.00% 22 0.00% 0 0.00% 22 0.00% 0 0.00% Apis mellifera Antenna Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239306 64,690,000 1,083,025 1.67% 6 0.00% 26 0.00% 0 0.00% 1,082,677 1.67% 228 0.00% 31 0.00% 0 0.00% 0 0.00% 0 0.00% 88 0.00% 0 0.00% Apis mellifera Antenna Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239307 75,120,000 16,016,166 21.32% 10 0.00% 3 0.00% 0 0.00% 16,014,712 21.32% 1,438 0.00% 97 0.00% 0 0.00% 0 0.00% 0 0.00% 3 0.00% 0 0.00% Apis mellifera Antenna Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239308 40,550,000 335,331 0.83% 40 0.00% 311,938 0.77% 0 0.00% 3,812 0.01% 459 0.00% 0 0.00% 0 0.00% 0 0.00% 22 0.00% 19,060 0.05% 0 0.00% Apis mellifera Midgut Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239309 43,220,000 13,584 0.03% 30 0.00% 2,767 0.01% 0 0.00% 9,005 0.02% 359 0.00% 0 0.00% 0 0.00% 0 0.00% 1,402 0.00% 21 0.00% 0 0.00% Apis mellifera Midgut Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239310 52,010,000 123,248 0.24% 2 0.00% 3,050 0.01% 0 0.00% 4,040 0.01% 321 0.00% 0 0.00% 51 0.00% 0 0.00% 238 0.00% 115,546 0.22% 0 0.00% Apis mellifera Midgut Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239311 49,140,000 3,016,792 6.14% 2 0.00% 584 0.00% 0 0.00% 2,971,300 6.05% 44,886 0.09% 17 0.00% 0 0.00% 0 0.00% 1 0.00% 19 0.00% 0 0.00% Apis mellifera Midgut Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239312 41,540,000 2,760,921 6.65% 40 0.00% 632 0.00% 0 0.00% 2,758,020 6.64% 1,997 0.00% 13 0.00% 6 0.00% 0 0.00% 2 0.00% 224 0.00% 0 0.00% Apis mellifera Midgut Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1239313 71,960,000 1,658,181 2.30% 9 0.00% 1,652,203 2.30% 0 0.00% 5,399 0.01% 517 0.00% 0 0.00% 1 0.00% 0 0.00% 0 0.00% 52 0.00% 0 0.00% Apis mellifera Midgut Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254946 81,055,276 2,447 0.00% 0 0.00% 0 0.00% 0 0.00% 2,401 0.00% 46 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Hypopharyngeal gland Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254947 68,532,663 216,590 0.32% 0 0.00% 0 0.00% 0 0.00% 216,517 0.32% 73 0.00% 6 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Hypopharyngeal gland Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254948 96,442,211 3,921 0.00% 0 0.00% 2 0.00% 0 0.00% 3,848 0.00% 71 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Hypopharyngeal gland Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254950 65,226,131 6,401,788 9.81% 0 0.00% 0 0.00% 0 0.00% 5,595,392 8.58% 806,396 1.24% 41 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Hypopharyngeal gland Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254951 95,608,040 6,430,285 6.73% 0 0.00% 0 0.00% 0 0.00% 6,429,386 6.72% 898 0.00% 81 0.00% 0 0.00% 0 0.00% 0 0.00% 1 0.00% 0 0.00% Apis mellifera Hypopharyngeal gland Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254952 83,266,332 2,782,952 3.34% 0 0.00% 0 0.00% 0 0.00% 2,782,907 3.34% 45 0.00% 31 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Hypopharyngeal gland Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254954 97,798,995 5,427 0.01% 0 0.00% 10 0.00% 0 0.00% 5,322 0.01% 73 0.00% 0 0.00% 0 0.00% 0 0.00% 15 0.00% 7 0.00% 0 0.00% Apis mellifera Malpighian tubule Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254956 91,678,392 62,669 0.07% 0 0.00% 28 0.00% 0 0.00% 62,578 0.07% 63 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Malpighian tubule Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254957 74,904,523 802,256 1.07% 0 0.00% 18 0.00% 0 0.00% 802,177 1.07% 61 0.00% 5 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Malpighian tubule Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254958 96,130,653 8,017,916 8.34% 0 0.00% 4 0.00% 0 0.00% 8,017,610 8.34% 302 0.00% 76 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Malpighian tubule Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254959 85,015,075 844,103 0.99% 0 0.00% 2 0.00% 0 0.00% 839,962 0.99% 4,139 0.00% 4 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Malpighian tubule Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1254960 81,809,045 7,978,461 9.75% 0 0.00% 5 0.00% 0 0.00% 7,978,373 9.75% 83 0.00% 54 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Malpighian tubule Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1255009 53,730,000 571,170 1.06% 0 0.00% 1 0.00% 0 0.00% 536,692 1.00% 34,477 0.06% 2 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Mandibular gland Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1255064 99,990,000 4,783,103 4.78% 0 0.00% 0 0.00% 0 0.00% 4,782,506 4.78% 597 0.00% 8 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Muscle Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1255151 56,390,000 3,513 0.01% 0 0.00% 389 0.00% 0 0.00% 2,856 0.01% 152 0.00% 0 0.00% 0 0.00% 0 0.00% 112 0.00% 4 0.00% 0 0.00% Apis mellifera Nasonov gland Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1255541 65,490,000 324,810 0.50% 0 0.00% 0 0.00% 0 0.00% 44,756 0.07% 280,054 0.43% 3 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera 2nd Thoracic Ganglia Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1255542 70,460,000 613 0.00% 0 0.00% 0 0.00% 0 0.00% 569 0.00% 44 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera 2nd Thoracic Ganglia Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1255543 66,340,000 847 0.00% 0 0.00% 0 0.00% 272 0.00% 532 0.00% 43 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera 2nd Thoracic Ganglia Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA243651 SRR1269199 45,120,000 4,731 0.01% 1 0.00% 236 0.00% 0 0.00% 3,685 0.01% 662 0.00% 0 0.00% 0 0.00% 0 0.00% 134 0.00% 13 0.00% 0 0.00% Apis mellifera Sting Gland Expression differences between nurse and forager castes with respect to ten tissue types. PRJNA257666 SRR1538749 36,250,000 3,595 0.01% 92 0.00% 166 0.00% 9 0.00% 1,561 0.00% 146 0.00% 9 0.00% 59 0.00% 47 0.00% 472 0.00% 90 0.00% 953 0.00% Apis mellifera Embryo Transcriptome of early embryonic development of haploid honeybees PRJNA257666 SRR1538849 35,361,111 17,809 0.05% 3,814 0.01% 1,619 0.00% 196 0.00% 2,038 0.01% 2,695 0.01% 354 0.00% 1,789 0.01% 2,202 0.01% 602 0.00% 1,017 0.00% 1,837 0.01% Apis mellifera embryo Transcriptome of early embryonic development of haploid honeybees PRJNA257666 SRR1538876 30,722,222 1,812 0.01% 87 0.00% 157 0.00% 16 0.00% 644 0.00% 90 0.00% 33 0.00% 36 0.00% 76 0.00% 12 0.00% 83 0.00% 611 0.00% Apis mellifera embryos Transcriptome of early embryonic development of haploid honeybees PRJNA257666 SRR1538877 38,583,333 17,401 0.05% 3,607 0.01% 1,499 0.00% 190 0.00% 2,206 0.01% 2,676 0.01% 2,150 0.01% 1,625 0.00% 2,238 0.01% 637 0.00% 967 0.00% 1,756 0.00% Apis mellifera embryo Transcriptome of early embryonic development of haploid honeybees PRJNA257666 SRR1538878 35,750,000 2,563 0.01% 73 0.00% 225 0.00% 6 0.00% 1,421 0.00% 102 0.00% 16 0.00% 41 0.00% 25 0.00% 151 0.00% 28 0.00% 491 0.00% Apis mellifera embryo Transcriptome of early embryonic development of haploid honeybees PRJNA257666 SRR1539264 38,333,333 1,469 0.00% 72 0.00% 81 0.00% 22 0.00% 496 0.00% 98 0.00% 23 0.00% 51 0.00% 35 0.00% 101 0.00% 75 0.00% 438 0.00% Apis mellifera embryos Transcriptome of early embryonic development of haploid honeybees PRJNA257666 SRR1539284 31,750,000 30,827 0.10% 9,206 0.03% 1,180 0.00% 158 0.00% 8,734 0.03% 3,519 0.01% 327 0.00% 1,965 0.01% 2,173 0.01% 492 0.00% 980 0.00% 2,420 0.01% Apis mellifera embryos Transcriptome of early embryonic development of haploid honeybees PRJNA257666 SRR1539288 31,416,667 6,597 0.02% 405 0.00% 141 0.00% 21 0.00% 5,059 0.02% 367 0.00% 426 0.00% 102 0.00% 147 0.00% 60 0.00% 189 0.00% 106 0.00% Apis mellifera oocyte Transcriptome of early embryonic development of haploid honeybees PRJNA257666 SRR3708802 3,638,889 1,374 0.04% 250 0.01% 111 0.00% 30 0.00% 152 0.00% 172 0.00% 38 0.00% 150 0.00% 165 0.00% 50 0.00% 118 0.00% 176 0.00% Apis mellifera embryos Transcriptome of early embryonic development of haploid honeybees PRJNA257666 SRR3708803 36,861,111 2,474 0.01% 225 0.00% 84 0.00% 4 0.00% 1,054 0.00% 134 0.00% 20 0.00% 61 0.00% 43 0.00% 18 0.00% 74 0.00% 777 0.00% Apis mellifera embryos Transcriptome of early embryonic development of haploid honeybees PRJNA257666 SRR3708804 38,527,778 3,584 0.01% 107 0.00% 96 0.00% 16 0.00% 1,231 0.00% 129 0.00% 17 0.00% 80 0.00% 67 0.00% 311 0.00% 217 0.00% 1,330 0.00% Apis mellifera embryos Transcriptome of early embryonic development of haploid honeybees PRJNA261549 SRR1582004 195,630,000 11,911 0.01% 0 0.00% 0 0.00% 0 0.00% 11,899 0.01% 0 0.00% 5 0.00% 0 0.00% 0 0.00% 0 0.00% 12 0.00% 0 0.00% Apis mellifera Brain CAGEScan for TSS of 8 nurses and 8 foragers of Apis Mellifera PRJNA261549 SRR1582203 129,550,000 13,239 0.01% 0 0.00% 0 0.00% 0 0.00% 13,237 0.01% 0 0.00% 17 0.00% 2 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Brain CAGEScan for TSS of 8 nurses and 8 foragers of Apis Mellifera PRJNA263933 SRR1613229 84,800,000 3,835 0.00% 333 0.00% 221 0.00% 731 0.00% 777 0.00% 350 0.00% 87 0.00% 251 0.00% 288 0.00% 272 0.00% 190 0.00% 422 0.00% Apis mellifera ovary honeybee Transcriptome or Gene expression PRJNA277772 SRR2032817 14,227,273 10,884 0.08% 52 0.00% 215 0.00% 90 0.00% 4 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 2 0.00% 10,521 0.07% 0 0.00% Apis mellifera whole body A search for parent-of-origin effects on gene expression in honey bees PRJNA277772 SRR2032827 12,125,000 10,172 0.08% 28 0.00% 174 0.00% 115 0.00% 2 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 3 0.00% 9,850 0.08% 0 0.00% Apis mellifera whole body A search for parent-of-origin effects on gene expression in honey bees PRJNA277772 SRR2032844 42,602,273 15,219 0.04% 13,569 0.03% 458 0.00% 2 0.00% 2 0.00% 0 0.00% 0 0.00% 1 0.00% 2 0.00% 4 0.00% 1,181 0.00% 0 0.00% Apis mellifera whole body A search for parent-of-origin effects on gene expression in honey bees PRJNA277772 SRR2032857 57,534,091 17,342 0.03% 15,826 0.03% 676 0.00% 0 0.00% 4 0.00% 0 0.00% 0 0.00% 0 0.00% 2 0.00% 7 0.00% 827 0.00% 0 0.00% Apis mellifera whole body A search for parent-of-origin effects on gene expression in honey bees PRJNA277772 SRR2033015 84,757,895 1,277 0.00% 0 0.00% 0 0.00% 0 0.00% 1,277 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera brain A search for parent-of-origin effects on gene expression in honey bees PRJNA284414 SRR2034269 84,811,881 6,881 0.01% 0 0.00% 97 0.00% 0 0.00% 6,776 0.01% 0 0.00% 0 0.00% 6 0.00% 0 0.00% 0 0.00% 2 0.00% 0 0.00% Apis mellifera ligustica whole abdomen Apis mellifera microbiota and parasite dynamics PRJNA284414 SRR2034271 86,514,851 1,729 0.00% 0 0.00% 486 0.00% 0 0.00% 1,227 0.00% 8 0.00% 0 0.00% 0 0.00% 0 0.00% 1 0.00% 7 0.00% 0 0.00% Apis mellifera ligustica whole abdomen Apis mellifera microbiota and parasite dynamics PRJNA292006 SRR2146246 32,432,161 2,616,392 8.07% 0 0.00% 0 0.00% 0 0.00% 2,616,233 8.07% 23 0.00% 8 0.00% 136 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera hypopharyngeal gland Investigating the Regulation of Hypopharyngeal Gland Activity in Honeybees Under Nutrition and Brood Pheromone Conditions through RNA-seq Transcriptomics PRJNA292006 SRR2146247 33,266,332 3,579,649 10.76% 0 0.00% 0 0.00% 0 0.00% 3,579,483 10.76% 35 0.00% 6 0.00% 131 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera hypopharyngeal gland Investigating the Regulation of Hypopharyngeal Gland Activity in Honeybees Under Nutrition and Brood Pheromone Conditions through RNA-seq Transcriptomics PRJNA292006 SRR2146248 35,035,176 5,335,652 15.23% 0 0.00% 0 0.00% 0 0.00% 3,577,273 10.21% 43 0.00% 3 0.00% 1,758,323 5.02% 13 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera hypopharyngeal gland Investigating the Regulation of Hypopharyngeal Gland Activity in Honeybees Under Nutrition and Brood Pheromone Conditions through RNA-seq Transcriptomics PRJNA292006 SRR2146249 34,442,211 5,137,295 14.92% 0 0.00% 0 0.00% 0 0.00% 5,136,385 14.91% 57 0.00% 15 0.00% 853 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera hypopharyngeal gland Investigating the Regulation of Hypopharyngeal Gland Activity in Honeybees Under Nutrition and Brood Pheromone Conditions through RNA-seq Transcriptomics PRJNA292006 SRR2146250 36,904,523 171,023 0.46% 0 0.00% 0 0.00% 0 0.00% 64,205 0.17% 2 0.00% 0 0.00% 106,816 0.29% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera hypopharyngeal gland Investigating the Regulation of Hypopharyngeal Gland Activity in Honeybees Under Nutrition and Brood Pheromone Conditions through RNA-seq Transcriptomics PRJNA292006 SRR2146251 36,964,824 265,905 0.72% 0 0.00% 0 0.00% 0 0.00% 265,492 0.72% 4 0.00% 1 0.00% 409 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera hypopharyngeal gland Investigating the Regulation of Hypopharyngeal Gland Activity in Honeybees Under Nutrition and Brood Pheromone Conditions through RNA-seq Transcriptomics PRJNA306498 SRR3033249 33,277,228 771 0.00% 0 0.00% 43 0.00% 0 0.00% 727 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 1 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033250 27,990,099 901 0.00% 0 0.00% 103 0.00% 0 0.00% 793 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 5 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033251 41,485,149 1,834 0.00% 0 0.00% 4 0.00% 0 0.00% 1,830 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033252 35,079,208 1,213 0.00% 0 0.00% 4 0.00% 0 0.00% 1,209 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033253 42,465,347 972 0.00% 3 0.00% 0 0.00% 0 0.00% 969 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033254 37,762,376 9,681,958 25.64% 3 0.00% 7 0.00% 0 0.00% 9,681,936 25.64% 12 0.00% 3 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033255 33,148,515 2,500 0.01% 0 0.00% 10 0.00% 0 0.00% 2,490 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033256 19,554,455 620 0.00% 0 0.00% 70 0.00% 0 0.00% 548 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 2 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033257 38,267,327 1,124 0.00% 1 0.00% 0 0.00% 0 0.00% 1,123 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033258 34,376,238 648 0.00% 0 0.00% 0 0.00% 0 0.00% 648 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033259 42,306,931 5,506 0.01% 0 0.00% 74 0.00% 0 0.00% 5,429 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 3 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033260 41,891,089 1,005 0.00% 0 0.00% 36 0.00% 0 0.00% 969 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033261 26,722,772 575 0.00% 0 0.00% 0 0.00% 0 0.00% 575 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and inactive ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033262 45,108,911 7,416 0.02% 0 0.00% 0 0.00% 0 0.00% 7,416 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033263 42,831,683 3,415 0.01% 0 0.00% 367 0.00% 0 0.00% 3,046 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 2 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033264 34,138,614 1,171 0.00% 0 0.00% 3 0.00% 0 0.00% 1,168 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033265 31,198,020 10,102,927 32.38% 0 0.00% 25 0.00% 0 0.00% 10,102,744 32.38% 158 0.00% 5 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033266 34,465,347 18,353,985 53.25% 0 0.00% 0 0.00% 0 0.00% 18,353,968 53.25% 17 0.00% 19 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033267 37,524,752 14,451 0.04% 0 0.00% 2 0.00% 0 0.00% 14,447 0.04% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 2 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033268 42,544,554 1,470 0.00% 0 0.00% 0 0.00% 0 0.00% 1,470 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033269 41,287,129 1,957 0.00% 0 0.00% 50 0.00% 0 0.00% 1,905 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 2 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033270 31,673,267 2,073 0.01% 0 0.00% 6 0.00% 0 0.00% 2,067 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033271 39,158,416 1,057 0.00% 0 0.00% 71 0.00% 0 0.00% 981 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 5 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033272 35,297,030 1,767 0.01% 0 0.00% 3 0.00% 0 0.00% 1,764 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA306498 SRR3033273 40,227,723 1,322 0.00% 0 0.00% 11 0.00% 0 0.00% 1,311 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Eviscerated abdomen with attached fat bodies and active ovaries Testing the Kinship Theory of Intragenomic Conflict in Honey Bees (Apis mellifera) (honey bee) PRJNA322424 SRR3569812 72,120,000 2,270 0.00% 0 0.00% 0 0.00% 0 0.00% 2,270 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera tissue Transcriptome sequencing of newly emerged and sexually matured bees of Apis mellifera PRJNA322424 SRR3569813 62,690,000 3,954 0.01% 0 0.00% 2 0.00% 0 0.00% 3,952 0.01% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera tissue Transcriptome sequencing of newly emerged and sexually matured bees of Apis mellifera PRJNA325192 SRR3657423 51,053,381 18,812 0.04% 0 0.00% 4,279 0.01% 37 0.00% 14,344 0.03% 152 0.00% 8 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis florea antennae Apis florea Antennal Transcriptome PRJNA325192 SRR3657424 49,814,286 9,684 0.02% 0 0.00% 9,660 0.02% 0 0.00% 21 0.00% 0 0.00% 0 0.00% 0 0.00% 1 0.00% 0 0.00% 2 0.00% 0 0.00% Apis florea antennae Apis florea Antennal Transcriptome PRJNA325930 SRR3675070 50,120,000 167,366 0.33% 0 0.00% 2 0.00% 0 0.00% 167,364 0.33% 0 0.00% 1 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mRNA profiling of Apis mellifera larvae fed with diets containing quercetin (honey bee) PRJNA338450 SRR4017751 48,810,000 14,326,784 29.35% 0 0.00% 0 0.00% 0 0.00% 14,326,777 29.35% 7 0.00% 29 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017752 47,110,000 13,835 0.03% 0 0.00% 0 0.00% 0 0.00% 13,835 0.03% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017753 40,470,000 2,628,508 6.49% 0 0.00% 0 0.00% 0 0.00% 2,628,507 6.49% 1 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017754 48,880,000 15,611,660 31.94% 0 0.00% 0 0.00% 0 0.00% 15,611,650 31.94% 10 0.00% 2 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017755 43,750,000 9,838,458 22.49% 0 0.00% 0 0.00% 0 0.00% 9,838,449 22.49% 9 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017756 62,520,000 6,787,705 10.86% 0 0.00% 0 0.00% 0 0.00% 6,787,699 10.86% 6 0.00% 5 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017757 60,160,000 11,946,959 19.86% 0 0.00% 0 0.00% 0 0.00% 11,946,938 19.86% 21 0.00% 3 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017758 54,970,000 7,943,363 14.45% 0 0.00% 0 0.00% 0 0.00% 7,943,363 14.45% 0 0.00% 16 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017759 48,420,000 8,130,066 16.79% 0 0.00% 0 0.00% 0 0.00% 8,130,044 16.79% 22 0.00% 14 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017760 50,960,000 4,785,884 9.39% 0 0.00% 0 0.00% 0 0.00% 4,785,876 9.39% 8 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017761 58,190,000 8,506,087 14.62% 0 0.00% 0 0.00% 0 0.00% 8,506,078 14.62% 9 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017762 48,140,000 10,614,521 22.05% 0 0.00% 0 0.00% 0 0.00% 10,614,517 22.05% 4 0.00% 45 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017763 54,340,000 13,235,380 24.36% 0 0.00% 0 0.00% 0 0.00% 13,235,368 24.36% 12 0.00% 316 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017764 58,080,000 18,613,317 32.05% 0 0.00% 0 0.00% 0 0.00% 18,613,308 32.05% 9 0.00% 84 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017765 54,080,000 14,750,613 27.28% 0 0.00% 0 0.00% 0 0.00% 14,750,603 27.28% 10 0.00% 3 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017766 46,490,000 7,389,038 15.89% 0 0.00% 0 0.00% 0 0.00% 7,389,031 15.89% 7 0.00% 114 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017767 37,470,000 10,764,745 28.73% 0 0.00% 0 0.00% 0 0.00% 10,764,738 28.73% 7 0.00% 43 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017768 50,830,000 9,891,951 19.46% 0 0.00% 0 0.00% 0 0.00% 9,891,938 19.46% 13 0.00% 2 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017769 97,460,000 23,602,507 24.22% 0 0.00% 0 0.00% 0 0.00% 23,601,980 24.22% 527 0.00% 22 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017770 61,200,000 15,030,605 24.56% 0 0.00% 0 0.00% 0 0.00% 15,030,594 24.56% 11 0.00% 6 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017775 60,490,000 26,358 0.04% 0 0.00% 0 0.00% 0 0.00% 26,358 0.04% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017776 45,780,000 15,459 0.03% 0 0.00% 0 0.00% 0 0.00% 15,459 0.03% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017777 38,810,000 6,467 0.02% 0 0.00% 0 0.00% 0 0.00% 6,467 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017779 76,340,000 32,993 0.04% 0 0.00% 0 0.00% 0 0.00% 32,993 0.04% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017780 68,010,000 26,271 0.04% 0 0.00% 0 0.00% 0 0.00% 26,271 0.04% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017782 46,830,000 9,004 0.02% 0 0.00% 0 0.00% 0 0.00% 9,004 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017783 29,200,000 30,118 0.10% 0 0.00% 0 0.00% 0 0.00% 30,118 0.10% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017784 75,540,000 14,497 0.02% 0 0.00% 0 0.00% 0 0.00% 14,497 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017785 52,820,000 1,528,765 2.89% 0 0.00% 0 0.00% 0 0.00% 1,528,764 2.89% 1 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017786 48,360,000 495,192 1.02% 0 0.00% 0 0.00% 0 0.00% 495,192 1.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017787 42,070,000 13,785 0.03% 0 0.00% 0 0.00% 0 0.00% 13,785 0.03% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017788 55,860,000 34,684 0.06% 0 0.00% 0 0.00% 0 0.00% 34,684 0.06% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017789 32,160,000 22,137 0.07% 0 0.00% 0 0.00% 0 0.00% 22,137 0.07% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017790 45,630,000 8,984 0.02% 0 0.00% 0 0.00% 0 0.00% 8,984 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017792 76,620,000 42,450 0.06% 0 0.00% 0 0.00% 0 0.00% 42,450 0.06% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017793 42,160,000 10,699 0.03% 0 0.00% 0 0.00% 0 0.00% 10,699 0.03% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017794 35,740,000 13,603 0.04% 0 0.00% 0 0.00% 0 0.00% 13,603 0.04% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017795 23,400,000 26,676 0.11% 0 0.00% 0 0.00% 0 0.00% 26,676 0.11% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017796 40,290,000 14,165 0.04% 0 0.00% 0 0.00% 0 0.00% 14,165 0.04% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017797 56,150,000 310,933 0.55% 0 0.00% 0 0.00% 0 0.00% 310,933 0.55% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA338450 SRR4017798 53,310,000 9,172 0.02% 0 0.00% 0 0.00% 0 0.00% 9,172 0.02% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera mushroom body (dissected from brain) Transcriptomic Analysis of Instinctive and Learned Reward-Related Behaviors in Honey Bees (honey bee) PRJNA51481 SRR063954 395,122 8,161 2.07% 0 0.00% 198 0.05% 0 0.00% 7,890 2.00% 1 0.00% 1 0.00% 0 0.00% 0 0.00% 72 0.02% 0 0.00% 0 0.00% Apis mellifera Apis mellifera transcriptome sequencing project PRJNA51481 SRR063956 592,308 5,118 0.86% 1 0.00% 1 0.00% 0 0.00% 4,205 0.71% 0 0.00% 0 0.00% 0 0.00% 884 0.15% 23 0.00% 4 0.00% 0 0.00% Apis mellifera Apis mellifera transcriptome sequencing project SRX148699 SRR498622 36,450,000 24,868 0.07% 0 0.00% 0 0.00% 0 0.00% 24,868 0.07% 0 0.00% 1 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Self-training algorithm for splice junction detection using RNA-seq and its application to honey bee transcriptomes SRX148699 SRR499808 39,060,000 84,318 0.22% 0 0.00% 0 0.00% 0 0.00% 84,318 0.22% 0 0.00% 1 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Self-training algorithm for splice junction detection using RNA-seq and its application to honey bee transcriptomes SRX148699 SRR499882 30,830,000 13,771 0.04% 0 0.00% 0 0.00% 0 0.00% 13,771 0.04% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Self-training algorithm for splice junction detection using RNA-seq and its application to honey bee transcriptomes SRX148699 SRR499883 35,310,000 102,244 0.29% 0 0.00% 0 0.00% 0 0.00% 102,243 0.29% 1 0.00% 2 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Self-training algorithm for splice junction detection using RNA-seq and its application to honey bee transcriptomes SRX148699 SRR499919 34,630,000 34,426 0.10% 0 0.00% 0 0.00% 0 0.00% 34,426 0.10% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Self-training algorithm for splice junction detection using RNA-seq and its application to honey bee transcriptomes SRX148699 SRR499920 36,090,000 220,926 0.61% 0 0.00% 0 0.00% 0 0.00% 220,926 0.61% 0 0.00% 1 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Self-training algorithm for splice junction detection using RNA-seq and its application to honey bee transcriptomes SRX148699 SRR499992 36,660,000 50,615 0.14% 0 0.00% 0 0.00% 0 0.00% 50,615 0.14% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Self-training algorithm for splice junction detection using RNA-seq and its application to honey bee transcriptomes SRX148699 SRR499993 35,000,000 37,158 0.11% 0 0.00% 0 0.00% 0 0.00% 37,158 0.11% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Self-training algorithm for splice junction detection using RNA-seq and its application to honey bee transcriptomes SRX148699 SRR499994 45,280,000 24,561,214 54.24% 0 0.00% 0 0.00% 0 0.00% 24,561,209 54.24% 5 0.00% 91 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Self-training algorithm for splice junction detection using RNA-seq and its application to honey bee transcriptomes SRX148699 SRR499995 33,080,000 22,152 0.07% 0 0.00% 0 0.00% 0 0.00% 22,152 0.07% 0 0.00% 1 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% 0 0.00% Apis mellifera Self-training algorithm for splice junction detection using RNA-seq and its application to honey bee transcriptomes