Summary Statistics: Number of pathways analyzed: 102 Number of pathway holes: 218 One or more candidates have been identified for 66 holes. |
List of Pathways
xyloglucan degradation II (exoglucanase)
Total # of reactions in pathway = 6
Present reactions: 3
Reaction | Protein(s) |
RXN-12398 |
(# |
RXN-12399 |
(# |
RXN-12400 |
(# |
Missing reactions: 3
3.2.1.120-RXN |
RXN-12397 |
RXN-12402 |
Evidence for , EC# EC-3.2.1.1203.2.1.120-RXN
Evidence for , EC# EC-3.2.1.155RXN-12397
Evidence for isoprimeverose α-xylosidase, EC# EC-3.2.1.177RXN-12402
xanthine and xanthosine salvage
Total # of reactions in pathway = 2
Present reactions: 1
Reaction | Protein(s) |
XANTHOSINEPHOSPHORY-RXN |
(# |
Missing reactions: 1
XANPRIBOSYLTRAN-RXN |
Evidence for , EC# EC-2.4.2.22XANPRIBOSYLTRAN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 0.016743753 | 1.0 | Q5WI27 | 0.819710160653955 | 1.0 | 0.6318408 | 201 | NIL | NIL |
GN3K-3826-MONOMER | Ribose ABC transporter, A | 0.0020121129 | 1.0 | P0A9M5 | 0.249449309721322 | 1.0 | 0.40789473 | 152 | NIL | NIL |
GN3K-3399-MONOMER | orf00617 | 1.4501007e-4 | 1.0 | Q1J141 | 0.321846664463365 | 1.0 | 0.22277227 | 202 | NIL | NIL |
Total # of reactions in pathway = 3
Present reactions: 1
Reaction | Protein(s) |
RXN-7657 |
(# |
Missing reactions: 2
BRANCHED-CHAINAMINOTRANSFERVAL-RXN |
RXN-7643 |
Evidence for Valine transaminase, EC# EC-2.6.1.42BRANCHED-CHAINAMINOTRANSFERVAL-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 0.5867721 | 2.0 | tr|A6UWA0|A6UWA0_META3 | 1.03125053024547e-13 | 1.0 | 0.7806656 | 286 | NIL | NIL |
Evidence for , EC# EC-4.1.1.72RXN-7643
urate biosynthesis/inosine 5'-phosphate degradation
Total # of reactions in pathway = 4
Present reactions: 3
Reaction | Protein(s) |
IMP-DEHYDROG-RXN |
(# |
XMPXAN-RXN |
(# |
XANTHOSINEPHOSPHORY-RXN |
(# |
Missing reactions: 1
RXN0-901 |
Evidence for , EC# EC-1.17.1.4RXN0-901
UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
Total # of reactions in pathway = 8
Present reactions: 7
Reaction | Protein(s) |
UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN |
(# |
UDPNACETYLMURAMATEDEHYDROG-RXN |
(# |
UDP-NACMUR-ALA-LIG-RXN |
(# |
UDP-NACMURALA-GLU-LIG-RXN |
(# |
GLUTRACE-RXN |
(# |
DALADALALIG-RXN |
(# |
6.3.2.10-RXN |
(# |
Missing reactions: 1
6.3.2.7-RXN |
Evidence for , EC# EC-6.3.2.76.3.2.7-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4752-MONOMER | Hydrolase | 0.0020121129 | 2.0 | Q8DYT2 | 0.00140354940927754 | 1.0 | 0.4657362 | 484 | NIL | NIL |
Total # of reactions in pathway = 4
Present reactions: 1
Reaction | Protein(s) |
RXN3O-4113 |
(# |
Missing reactions: 3
TYRAMINOTRANS-RXN |
4.1.1.80-RXN |
RXN3O-4157 |
Evidence for Tyrosine transaminase, EC# EC-2.6.1.57TYRAMINOTRANS-RXN
Evidence for , EC# EC-4.1.1.804.1.1.80-RXN
Evidence for , EC# EC-2.6.1.58RXN3O-4157
tryptophan degradation IV (via indole-3-lactate)
Total # of reactions in pathway = 2
Present reactions: 1
Reaction | Protein(s) |
TRYPTOPHAN-AMINOTRANSFERASE-RXN |
(# |
Missing reactions: 1
INDOLELACTATE-DEHYDROGENASE-RXN |
Evidence for , EC# EC-1.1.1.110INDOLELACTATE-DEHYDROGENASE-RXN
Total # of reactions in pathway = 10
Present reactions: 5
Reaction | Protein(s) |
RXN0-6478 |
(# |
RXN0-6479 |
(# |
RXN0-6480 |
(# |
3.1.26.5-RXN |
(# |
RXN0-6485 |
(# |
Missing reactions: 5
RXN0-4222 |
RXN0-6482 |
RXN0-6484 |
RXN0-6483 |
RXN0-6481 |
Evidence for , EC# EC-3.1.13.1RXN0-4222
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5306-MONOMER | Hypothetical protein | 5.8898037e-5 | 2.0 | P75529 | 0.229126513780165 | 1.0 | 0.12182419 | 726 | NIL | NIL |
Evidence for , EC# EC-2.7.7.56RXN0-6482
Evidence for , EC# EC-3.1.13.5RXN0-6484
Evidence for , EC# EC-3.1.13.5RXN0-6483
Evidence for , EC# EC-2.7.7.56RXN0-6481
Total # of reactions in pathway = 4
Present reactions: 2
Reaction | Protein(s) |
THREDEHYD-RXN |
(# |
PTAALT-RXN |
(# |
Missing reactions: 2
KETOBUTFORMLY-RXN |
PROPKIN-RXN |
Evidence for 2-ketobutyrate formate-lyase, EC# EC-2.3.1KETOBUTFORMLY-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4531-MONOMER | Primase | 0.56284624 | 2.0 | P09373 | 1.745165762865e-121 | 1.0 | 0.384524 | 760 | NIL | NIL |
Evidence for , EC# EC-2.7.2.15PROPKIN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4295-MONOMER | Hypothetical protein | 0.9896033 | 4.0 | A1JTT9 | 1.6581014471819e-92 | 1.0 | 0.80992174 | 412 | NIL | NIL |
threonine biosynthesis from homoserine
Total # of reactions in pathway = 2
Present reactions: 1
Reaction | Protein(s) |
HOMOSERKIN-RXN |
(# |
Missing reactions: 1
THRESYN-RXN |
Evidence for , EC# EC-4.2.3.1THRESYN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 0.5867721 | 3.0 | Q58860 | 1.45206963836301e-15 | 1.0 | 0.7694084 | 405 | NIL | NIL |
thiazole biosynthesis II (Bacillus)
Total # of reactions in pathway = 7
Present reactions: 5
Reaction | Protein(s) |
THIAZOLSYN2-RXN | NIL |
DXS-RXN |
(# |
RXN-9789 | NIL |
RXN-12621 | NIL |
RXN0-308 |
(# |
Missing reactions: 2
RXN-12609 |
RXN-12614 |
Evidence for , EC# EC-5.3.99.10RXN-12609
Evidence for glycine oxidaseRXN-12614
thiazole biosynthesis I (E. coli)
Total # of reactions in pathway = 6
Present reactions: 5
Reaction | Protein(s) |
THIAZOLSYN2-RXN | NIL |
DXS-RXN |
(# |
RXN-9787 |
(# |
RXN-9788 | NIL |
RXN-9789 | NIL |
Missing reactions: 1
RXN-11319 |
Evidence for , EC# EC-4.1.99.19RXN-11319
thiamin diphosphate biosynthesis IV (eukaryotes)
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
RXNQT-4191 |
(# |
THIAMIN-PYROPHOSPHOKINASE-RXN |
(# |
Missing reactions: 1
THI-P-SYN-RXN |
Evidence for , EC# EC-2.5.1.3THI-P-SYN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4067-MONOMER | Geranyltranstransferase | 0.007948102 | 1.0 | Q0VSP5 | 0.0705834555209356 | 1.0 | 0.48387095 | 217 | T | NIL |
GN3K-3554-MONOMER | orf00764 | 0.0020121129 | 2.0 | A4FX32 | 0.131432137143233 | 1.0 | 0.4219117 | 207 | NIL | NIL |
GN3K-4081-MONOMER | orf01259 | 0.0020121129 | 1.0 | Q8R806 | 0.59456008502637 | 1.0 | 0.45794392 | 214 | NIL | NIL |
GN3K-5360-MONOMER | DNA-directed RNA polymera | 5.8898037e-5 | 1.0 | A8M9N4 | 0.675307560456064 | 1.0 | 0.17073171 | 205 | NIL | NIL |
thiamin diphosphate biosynthesis III (Staphylococcus)
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
RXNQT-4191 |
(# |
THIAMIN-PYROPHOSPHOKINASE-RXN |
(# |
Missing reactions: 1
RXN-12610 |
Evidence for thiamine-phosphate diphosphorylase, EC# EC-2.5.1.3RXN-12610
Total # of reactions in pathway = 3
Present reactions: 1
Reaction | Protein(s) |
H2PTEROATESYNTH-RXN |
(# |
Missing reactions: 2
DIHYDROFOLATESYNTH-RXN |
DIHYDROFOLATEREDUCT-RXN |
Evidence for , EC# EC-6.3.2.12DIHYDROFOLATESYNTH-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4752-MONOMER | Hydrolase | 0.14950857 | 3.0 | Q8W041 | 6.85656738641337e-37 | 1.0 | 0.49398634 | 530 | NIL | NIL |
Evidence for , EC# EC-1.5.1.3DIHYDROFOLATEREDUCT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5037-MONOMER | Radical SAM (S-adenosylme | 1.4501007e-4 | 1.0 | Q9U8B8 | 0.549885792997151 | 1.0 | 0.28108108 | 185 | NIL | NIL |
GN3K-4305-MONOMER | ABC transporter, ATP-bind | 1.4501007e-4 | 1.0 | P43791 | 0.0729869211974513 | 1.0 | 0.2375 | 160 | NIL | NIL |
GN3K-5165-MONOMER | Hypothetical protein | 1.4501007e-4 | 1.0 | P13955 | 0.917500922905107 | 1.0 | 0.2857143 | 161 | NIL | NIL |
GN3K-4081-MONOMER | orf01259 | 1.4501007e-4 | 1.0 | Q5V600 | 0.237438219287171 | 1.0 | 0.2754491 | 167 | NIL | NIL |
superpathway of heme biosynthesis from uroporphyrinogen-III
Total # of reactions in pathway = 5
Present reactions: 3
Reaction | Protein(s) |
PROTOHEMEFERROCHELAT-RXN |
(# |
RXN0-1461 |
(# |
HEMESYN2-PWY | NIL |
Missing reactions: 2
UROGENDECARBOX-RXN |
PROTOPORGENOXI-RXN |
Evidence for , EC# EC-4.1.1.37UROGENDECARBOX-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5422-MONOMER | Uroporphyrinogen-III meth | 1.4501007e-4 | 1.0 | Q11X05 | 0.0361039359937739 | 1.0 | 0.22674419 | 344 | NIL | NIL |
GN3K-4012-MONOMER | Capsule biosynthesis prot | 1.4501007e-4 | 1.0 | Q5GTT1 | 0.806961061597943 | 1.0 | 0.29971182 | 347 | NIL | NIL |
GN3K-3172-MONOMER | CDP-diacylglycerol--glyce | 6.258456e-5 | 1.0 | P29680 | 0.41117452696262 | 1.0 | 0.059322033 | 354 | NIL | NIL |
Evidence for , EC# EC-1.3.3.4PROTOPORGENOXI-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3587-MONOMER | Aluminum resistance prote | 1.4501007e-4 | 1.0 | P0ACB4 | 0.031056071722715 | 1.0 | 0.28176796 | 181 | NIL | NIL |
superpathway of 5-aminoimidazole ribonucleotide biosynthesis
Total # of reactions in pathway = 7
Present reactions: 6
Reaction | Protein(s) |
PRPPAMIDOTRANS-RXN |
(# |
GLYRIBONUCSYN-RXN |
(# |
FGAMSYN-RXN |
(# |
AIRS-RXN |
(# |
PWY-6121 | NIL |
PWY-6122 | NIL |
Missing reactions: 1
GARTRANSFORMYL2-RXN |
Evidence for , EC# EC-2.1.2GARTRANSFORMYL2-RXN
superoxide radicals degradation
Total # of reactions in pathway = 2
Present reactions: 1
Reaction | Protein(s) |
SUPEROX-DISMUT-RXN |
(# |
Missing reactions: 1
CATAL-RXN |
Evidence for , EC# EC-1.11.1.6CATAL-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 1.4501007e-4 | 2.0 | P60355 | 0.155598441257335 | 1.0 | 0.26416382 | 266 | NIL | NIL |
GN3K-5129-MONOMER | Vitamin B12 dependent met | 5.8898037e-5 | 1.0 | P50979 | 0.0673106776273088 | 1.0 | 0.101983 | 706 | NIL | NIL |
Total # of reactions in pathway = 4
Present reactions: 1
Reaction | Protein(s) |
SUCROSE-PHOSPHORYLASE-RXN |
(# |
Missing reactions: 3
FRUCTOKINASE-RXN |
PHOSPHOGLUCMUT-RXN |
PGLUCISOM-RXN |
Evidence for fructokinase, EC# EC-2.7.1.4FRUCTOKINASE-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 1.4501007e-4 | 1.0 | Q9ZHJ6 | 0.21075339287014 | 1.0 | 0.23076923 | 312 | NIL | NIL |
Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5423-MONOMER | Porphobilinogen deaminase | 6.258456e-5 | 1.0 | Q03262 | 0.721210927867915 | 1.0 | 0.096463025 | 622 | NIL | NIL |
GN3K-4295-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q49WH7 | 0.382450792993071 | 1.0 | 0.17391305 | 552 | NIL | NIL |
Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN
Total # of reactions in pathway = 7
Present reactions: 2
Reaction | Protein(s) |
RXN-1461 |
(# |
GLUC1PURIDYLTRANS-RXN |
(# |
Missing reactions: 5
FRUCTOKINASE-RXN |
PGLUCISOM-RXN |
PHOSPHOGLUCMUT-RXN |
SUCROSE-SYNTHASE-RXN |
RXN-1685 |
Evidence for fructokinase, EC# EC-2.7.1.4FRUCTOKINASE-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 1.4501007e-4 | 1.0 | Q9ZHJ6 | 0.21075339287014 | 1.0 | 0.23076923 | 312 | NIL | NIL |
Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN
Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5423-MONOMER | Porphobilinogen deaminase | 6.258456e-5 | 1.0 | Q03262 | 0.721210927867915 | 1.0 | 0.096463025 | 622 | NIL | NIL |
GN3K-4295-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q49WH7 | 0.382450792993071 | 1.0 | 0.17391305 | 552 | NIL | NIL |
Evidence for Sucrose synthase, EC# EC-2.4.1.13SUCROSE-SYNTHASE-RXN
Evidence for , EC# EC-2.7.1.1RXN-1685
Total # of reactions in pathway = 2
Present reactions: 1
Reaction | Protein(s) |
3.2.1.26-RXN |
(# |
Missing reactions: 1
FRUCTOKINASE-RXN |
Evidence for fructokinase, EC# EC-2.7.1.4FRUCTOKINASE-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 1.4501007e-4 | 1.0 | Q9ZHJ6 | 0.21075339287014 | 1.0 | 0.23076923 | 312 | NIL | NIL |
Total # of reactions in pathway = 9
Present reactions: 5
Reaction | Protein(s) |
GLUC1PURIDYLTRANS-RXN |
(# |
PHOSGLYPHOS-RXN |
(# |
GAPOXNPHOSPHN-RXN |
(# |
F16ALDOLASE-RXN |
(# |
F16BDEPHOS-RXN |
(# |
Missing reactions: 4
PHOSPHOGLUCMUT-RXN |
SUCROSE-PHOSPHATE-SYNTHASE-RXN |
SUCROSE-PHOSPHATASE-RXN |
PGLUCISOM-RXN |
Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5423-MONOMER | Porphobilinogen deaminase | 6.258456e-5 | 1.0 | Q03262 | 0.721210927867915 | 1.0 | 0.096463025 | 622 | NIL | NIL |
GN3K-4295-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q49WH7 | 0.382450792993071 | 1.0 | 0.17391305 | 552 | NIL | NIL |
Evidence for , EC# EC-2.4.1.14SUCROSE-PHOSPHATE-SYNTHASE-RXN
Evidence for , EC# EC-3.1.3.24SUCROSE-PHOSPHATASE-RXN
Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN
Total # of reactions in pathway = 4
Present reactions: 2
Reaction | Protein(s) |
CYCLOMALTODEXTRINASE-RXN |
(# |
RXN-12171 |
(# |
Missing reactions: 2
PHOSPHOGLUCMUT-RXN |
RXN-12181 |
Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5423-MONOMER | Porphobilinogen deaminase | 6.258456e-5 | 1.0 | Q03262 | 0.721210927867915 | 1.0 | 0.096463025 | 622 | NIL | NIL |
GN3K-4295-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q49WH7 | 0.382450792993071 | 1.0 | 0.17391305 | 552 | NIL | NIL |
Evidence for cyclodextrin glucanotransferase, EC# EC-2.4.1.19RXN-12181
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 0.089777395 | 1.0 | Q9UWN2 | 3.81516479532657e-19 | 1.0 | 0.56562924 | 739 | NIL | NIL |
GN3K-5261-MONOMER | Transcriptional regulator | 0.008697911 | 1.0 | Q9UWN2 | 1.39254018770922e-13 | 2.0 | 0.34776726 | 739 | NIL | NIL |
Total # of reactions in pathway = 5
Present reactions: 3
Reaction | Protein(s) |
GLUC1PADENYLTRANS-RXN |
(# |
GLYCOGENSYN-RXN |
(# |
RXN-7710 |
(# |
Missing reactions: 2
PGLUCISOM-RXN |
PHOSPHOGLUCMUT-RXN |
Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN
Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5423-MONOMER | Porphobilinogen deaminase | 6.258456e-5 | 1.0 | Q03262 | 0.721210927867915 | 1.0 | 0.096463025 | 622 | NIL | NIL |
GN3K-4295-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q49WH7 | 0.382450792993071 | 1.0 | 0.17391305 | 552 | NIL | NIL |
Total # of reactions in pathway = 8
Present reactions: 5
Reaction | Protein(s) |
UDPGLUCEPIM-RXN |
(# |
RXN-11501 |
(# |
GALACTURIDYLYLTRANS-RXN |
(# |
GLUC1PURIDYLTRANS-RXN |
(# |
GALACTOKIN-RXN |
(# |
Missing reactions: 3
UTPHEXPURIDYLYLTRANS-RXN |
RXN-11502 |
RXN-11505 |
Evidence for , EC# EC-2.7.7.10UTPHEXPURIDYLYLTRANS-RXN
Evidence for , EC# EC-3.2.1RXN-11502
Total # of reactions in pathway = 3
Present reactions: 1
Reaction | Protein(s) |
RXN0-5114 |
(# |
Missing reactions: 2
PSERTRANSAM-RXN |
PGLYCDEHYDROG-RXN |
Evidence for , EC# EC-2.6.1.52PSERTRANSAM-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5386-MONOMER | DNA integrity scanning pr | 1.4501007e-4 | 1.0 | Q1D2L9 | 0.120072899125704 | 1.0 | 0.21823205 | 362 | NIL | NIL |
Evidence for , EC# EC-1.1.1.95PGLYCDEHYDROG-RXN
salvage pathways of pyrimidine deoxyribonucleotides
Total # of reactions in pathway = 5
Present reactions: 3
Reaction | Protein(s) |
DURIDKI-RXN |
(# |
THYM-PHOSPH-RXN |
(# |
THYKI-RXN |
(# |
Missing reactions: 2
CYTIDEAM-RXN |
URA-PHOSPH-RXN |
Evidence for , EC# EC-3.5.4.14CYTIDEAM-RXN
Total # of reactions in pathway = 13
Present reactions: 4
Reaction | Protein(s) |
PEPDEPHOS-RXN |
(# |
PYRUVDEH-RXN |
(# |
PYRUVFORMLY-RXN |
(# |
2PGADEHYDRAT-RXN |
(# |
Missing reactions: 9
CITSYN-RXN |
ACONITATEDEHYDR-RXN |
ACONITATEHYDR-RXN |
PEPCARBOX-RXN |
FUMHYDR-RXN |
FHLMULTI-RXN |
R601-RXN |
ISOCITDEH-RXN |
MALATE-DEH-RXN |
Evidence for , EC# EC-2.3.3.1CITSYN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5165-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q5UZI9 | 0.0714995046188795 | 1.0 | 0.11811024 | 381 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | O34002 | 0.35247478461291 | 1.0 | 0.14511873 | 379 | NIL | NIL |
GN3K-4081-MONOMER | orf01259 | 5.8898037e-5 | 1.0 | P24118 | 0.136076226683792 | 1.0 | 0.16233766 | 462 | NIL | NIL |
Evidence for , EC# EC-4.2.1.3ACONITATEDEHYDR-RXN
Evidence for , EC# EC-4.2.1.3ACONITATEHYDR-RXN
Evidence for , EC# EC-4.1.1.31PEPCARBOX-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3399-MONOMER | orf00617 | 6.258456e-5 | 1.0 | A4VN44 | 0.0625675267997296 | 1.0 | 0.07736064 | 879 | NIL | NIL |
Evidence for , EC# EC-4.2.1.2FUMHYDR-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5165-MONOMER | Hypothetical protein | 1.4501007e-4 | 1.0 | O66271 | 0.380573426357479 | 1.0 | 0.2274678 | 466 | NIL | NIL |
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3942-MONOMER | orf01131 | 9.6593995e-4 | 1.0 | P16432 | 0.00229655308914807 | 1.0 | 0.3611111 | 180 | NIL | NIL |
GN3K-3594-MONOMER | Hypothetical protein | 3.9928098e-5 | 1.0 | P16432 | 0.0164534361835148 | 2.0 | 0.28333333 | 180 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 1.4988173e-5 | 1.0 | P16432 | 0.0264730727019621 | 3.0 | 0.2888889 | 180 | NIL | NIL |
Evidence for , EC# EC-1.3.5.4R601-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5271-MONOMER | Transposase | 1.4501007e-4 | 1.0 | P0AC47 | 0.0184111090134787 | 1.0 | 0.29098362 | 244 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 1.6216387e-5 | 1.0 | P0AC47 | 0.0869116193842571 | 2.0 | 0.18852459 | 244 | NIL | NIL |
Evidence for , EC# EC-1.1.1.42ISOCITDEH-RXN
Evidence for , EC# EC-1.1.1.37MALATE-DEH-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 9.6593995e-4 | 1.0 | A7HT37 | 0.93398296100543 | 1.0 | 0.34234235 | 333 | NIL | NIL |
GN3K-4029-MONOMER | Chromosome partition prot | 9.6593995e-4 | 1.0 | Q54GE6 | 0.224148095668757 | 1.0 | 0.3657289 | 391 | NIL | NIL |
GN3K-4295-MONOMER | Hypothetical protein | 1.4501007e-4 | 1.0 | P83778 | 0.133543237525046 | 1.0 | 0.27893174 | 337 | NIL | NIL |
GN3K-5164-MONOMER | Lysyl-tRNA synthetase | 3.9928098e-5 | 1.0 | P83778 | 0.164517846222479 | 2.0 | 0.27893174 | 337 | NIL | NIL |
Total # of reactions in pathway = 4
Present reactions: 1
Reaction | Protein(s) |
RXN0-1342 |
(# |
Missing reactions: 3
RXN0-4022 |
RXN0-1321 |
RXN-12104 |
Evidence for , EC# EC-1.7.1.13RXN0-4022
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 1.4501007e-4 | 1.0 | B3EMR0 | 0.148303616548215 | 1.0 | 0.2457627 | 118 | NIL | NIL |
GN3K-4752-MONOMER | Hydrolase | 1.4501007e-4 | 1.0 | Q5MZT0 | 0.708486738973599 | 1.0 | 0.24712643 | 174 | NIL | NIL |
Evidence for , EC# EC-2.4.2.29RXN0-1321
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3589-MONOMER | ABC transporter, ATP-bind | 6.258456e-5 | 1.0 | B4N549 | 0.871332919972895 | 1.0 | 0.06775701 | 428 | NIL | NIL |
pyruvate fermentation to butanoate
Total # of reactions in pathway = 7
Present reactions: 4
Reaction | Protein(s) |
PHOSPHATE-BUTYRYLTRANSFERASE-RXN |
(# |
BUTYRATE-KINASE-RXN |
(# |
PYRUFLAVREDUCT-RXN | NIL |
BUTYRYL-COA-DEHYDROGENASE-RXN | NIL |
Missing reactions: 3
ACETYL-COA-ACETYLTRANSFER-RXN |
RXN-11662 |
RXN-11667 |
Evidence for , EC# EC-2.3.1.9ACETYL-COA-ACETYLTRANSFER-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5321-MONOMER | Cobalt ABC transporter, A | 5.8898037e-5 | 1.0 | Q86AD9 | 0.450861676947931 | 1.0 | 0.1884058 | 414 | NIL | NIL |
GN3K-4311-MONOMER | Penicillin-binding protei | 5.8898037e-5 | 1.0 | Q6L8K7 | 0.779915203250884 | 1.0 | 0.16372795 | 397 | NIL | NIL |
Evidence for , EC# EC-1.1.1.35RXN-11662
Evidence for (S)-3-hydroxybutanoyl-CoA dehydrogenase, EC# EC-4.2.1RXN-11667
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 2.0831992e-4 | 1.0 | A5N5C7 | 0.938940233514613 | 3.0 | 0.47490346 | 259 | NIL | NIL |
GN3K-5161-MONOMER | tRNA-dihydrouridine synth | 1.4501007e-4 | 1.0 | A5N5C7 | 0.718921252517547 | 1.0 | 0.23552124 | 259 | NIL | NIL |
GN3K-5165-MONOMER | Hypothetical protein | 3.9928098e-5 | 1.0 | A5N5C7 | 0.731018910011046 | 2.0 | 0.23552124 | 259 | NIL | NIL |
pyrimidine ribonucleotides interconversion
Total # of reactions in pathway = 11
Present reactions: 4
Reaction | Protein(s) |
2.7.4.22-RXN |
(# |
RXN-12196 |
(# |
RXN-12195 |
(# |
CMPKI-RXN |
(# |
Missing reactions: 7
UDPKIN-RXN |
CTPSYN-RXN |
CDPKIN-RXN |
RXN-12200 |
RXN-12199 |
RXN-12198 |
RXN-12197 |
Evidence for , EC# EC-2.7.4.6UDPKIN-RXN
Evidence for , EC# EC-6.3.4.2CTPSYN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3399-MONOMER | orf00617 | 1.4501007e-4 | 1.0 | Q0SMT3 | 0.437152770814311 | 1.0 | 0.2251407 | 533 | NIL | NIL |
GN3K-3197-MONOMER | Acetyl-CoA carboxylase, b | 6.258456e-5 | 1.0 | Q2GCQ2 | 0.487022486553904 | 1.0 | 0.047445256 | 548 | NIL | NIL |
GN3K-4752-MONOMER | Hydrolase | 6.258456e-5 | 1.0 | Q7MAI3 | 0.803674028052541 | 1.0 | 0.083333336 | 552 | NIL | NIL |
Evidence for , EC# EC-2.7.4.6CDPKIN-RXN
Evidence for , EC# EC-3.6.1.5RXN-12200
Evidence for , EC# EC-3.6.1.5RXN-12199
Evidence for , EC# EC-3.6.1.6RXN-12198
Evidence for , EC# EC-3.6.1.6RXN-12197
pyrimidine ribonucleosides degradation II
Total # of reactions in pathway = 2
Present reactions: 1
Reaction | Protein(s) |
CYTIDEAM2-RXN |
(# |
Missing reactions: 1
URIDINE-NUCLEOSIDASE-RXN |
Evidence for , EC# EC-3.2.2.3URIDINE-NUCLEOSIDASE-RXN
pyrimidine ribonucleosides degradation I
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
CYTIDEAM2-RXN |
(# |
PPENTOMUT-RXN |
(# |
Missing reactions: 1
URPHOS-RXN |
Evidence for , EC# EC-2.4.2.3URPHOS-RXN
pyrimidine deoxyribonucleotides de novo biosynthesis II
Total # of reactions in pathway = 14
Present reactions: 9
Reaction | Protein(s) |
RXN-8850 |
(# |
DTMPKI-RXN |
(# |
DUTP-PYROP-RXN |
(# |
UDPREDUCT-RXN | NIL |
CDPREDUCT-RXN | NIL |
RXN0-723 | NIL |
RXN0-724 | NIL |
RIBONUCLEOSIDE-DIP-REDUCTII-RXN | NIL |
RXN0-722 | NIL |
Missing reactions: 5
DTDPKIN-RXN |
DUDPKIN-RXN |
DCTP-DEAM-RXN |
DCDPKIN-RXN |
RXN-11556 |
Evidence for , EC# EC-2.7.4.6DTDPKIN-RXN
Evidence for , EC# EC-2.7.4.6DUDPKIN-RXN
Evidence for , EC# EC-3.5.4.13DCTP-DEAM-RXN
Evidence for , EC# EC-2.7.4.6DCDPKIN-RXN
Evidence for CDP reductase, EC# EC-1.17.4RXN-11556
pyrimidine deoxyribonucleosides degradation
Total # of reactions in pathway = 6
Present reactions: 4
Reaction | Protein(s) |
THYM-PHOSPH-RXN |
(# |
D-PPENTOMUT-RXN |
(# |
DEOXYRIBOSE-P-ALD-RXN |
(# |
ACETALD-DEHYDROG-RXN |
(# |
Missing reactions: 2
CYTIDEAM-RXN |
URA-PHOSPH-RXN |
Evidence for , EC# EC-3.5.4.14CYTIDEAM-RXN
purine ribonucleosides degradation to ribose-1-phosphate
Total # of reactions in pathway = 6
Present reactions: 2
Reaction | Protein(s) |
XANTHOSINEPHOSPHORY-RXN |
(# |
PPENTOMUT-RXN |
(# |
Missing reactions: 4
ADENPHOSPHOR-RXN |
ADENODEAMIN-RXN |
INOPHOSPHOR-RXN |
RXN0-5199 |
Evidence for adenosine phosphorylase, EC# EC-2.4.2.1ADENPHOSPHOR-RXN
Evidence for , EC# EC-3.5.4.4ADENODEAMIN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5165-MONOMER | Hypothetical protein | 9.6593995e-4 | 1.0 | A5N6F5 | 0.0744937527315004 | 1.0 | 0.30172414 | 348 | NIL | NIL |
GN3K-3275-MONOMER | DNA polymerase I | 3.9928098e-5 | 1.0 | A5N6F5 | 0.524871130064722 | 2.0 | 0.20402299 | 348 | NIL | NIL |
Evidence for inosine phosphorylase, EC# EC-2.4.2.1INOPHOSPHOR-RXN
Evidence for guanosine phosphorylase, EC# EC-2.4.2.1RXN0-5199
purine nucleotides degradation IV (anaerobic)
Total # of reactions in pathway = 22
Present reactions: 9
Reaction | Protein(s) |
4.3.1.4-RXN |
(# |
METHENYLTHFCYCLOHYDRO-RXN |
(# |
FORMATETHFLIG-RXN |
(# |
METHYLENETHFDEHYDROG-NADP-RXN |
(# |
GLYOHMETRANS-RXN |
(# |
4.3.1.17-RXN |
(# |
PYRUFLAVREDUCT-RXN | NIL |
PHOSACETYLTRANS-RXN |
(# |
ACETATEKIN-RXN |
(# |
Missing reactions: 13
GUANINE-DEAMINASE-RXN |
R127-RXN |
R128-RXN |
R62-RXN |
R13-RXN |
R63-RXN |
GLYCINE-FORMIMINOTRANSFERASE-RXN |
1.2.1.2-RXN |
RXN0-901 |
RXN-8752 |
RXN-8751 |
RXN-8754 |
RXN-8753 |
Evidence for , EC# EC-3.5.4.3GUANINE-DEAMINASE-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | Q9WTT6 | 0.76178760181823 | 1.0 | 0.11013216 | 454 | NIL | NIL |
Evidence for , EC# EC-3.5.4.8R13-RXN
Evidence for , EC# EC-3.5.2R63-RXN
Evidence for , EC# EC-2.1.2.4GLYCINE-FORMIMINOTRANSFERASE-RXN
Evidence for , EC# EC-1.2.1.21.2.1.2-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 5.8898037e-5 | 1.0 | P33160 | 0.191216462311197 | 1.0 | 0.10473815 | 401 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 3.9928098e-5 | 3.0 | Q60316 | 4.55992202075652e-5 | 1.3333334 | 0.20402466 | 379 | NIL | NIL |
GN3K-3942-MONOMER | orf01131 | 1.7231443e-5 | 2.0 | Q2YYT1 | 0.0265633891562929 | 1.5 | 0.051801115 | 984 | NIL | NIL |
GN3K-5271-MONOMER | Transposase | 1.6216387e-5 | 1.0 | P06130 | 0.08672866289175 | 2.0 | 0.17293233 | 399 | NIL | NIL |
GN3K-3594-MONOMER | Hypothetical protein | 6.0872053e-6 | 2.0 | P06130 | 0.115177213321922 | 3.0 | 0.105200335 | 399 | NIL | NIL |
Evidence for , EC# EC-1.17.1.4RXN0-901
purine nucleotides degradation III (anaerobic)
Total # of reactions in pathway = 17
Present reactions: 5
Reaction | Protein(s) |
4.3.1.4-RXN |
(# |
METHENYLTHFCYCLOHYDRO-RXN |
(# |
FORMATETHFLIG-RXN |
(# |
RXN-7566 |
(# |
ACETATEKIN-RXN |
(# |
Missing reactions: 12
GUANINE-DEAMINASE-RXN |
R127-RXN |
R128-RXN |
R62-RXN |
R13-RXN |
R63-RXN |
GLYCINE-FORMIMINOTRANSFERASE-RXN |
1.2.1.2-RXN |
RXN0-901 |
RXN-8752 |
RXN-8755 |
RXN-7682 |
Evidence for , EC# EC-3.5.4.3GUANINE-DEAMINASE-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | Q9WTT6 | 0.76178760181823 | 1.0 | 0.11013216 | 454 | NIL | NIL |
Evidence for , EC# EC-3.5.4.8R13-RXN
Evidence for , EC# EC-3.5.2R63-RXN
Evidence for , EC# EC-2.1.2.4GLYCINE-FORMIMINOTRANSFERASE-RXN
Evidence for , EC# EC-1.2.1.21.2.1.2-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 5.8898037e-5 | 1.0 | P33160 | 0.191216462311197 | 1.0 | 0.10473815 | 401 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 3.9928098e-5 | 3.0 | Q60316 | 4.55992202075652e-5 | 1.3333334 | 0.20402466 | 379 | NIL | NIL |
GN3K-3942-MONOMER | orf01131 | 1.7231443e-5 | 2.0 | Q2YYT1 | 0.0265633891562929 | 1.5 | 0.051801115 | 984 | NIL | NIL |
GN3K-5271-MONOMER | Transposase | 1.6216387e-5 | 1.0 | P06130 | 0.08672866289175 | 2.0 | 0.17293233 | 399 | NIL | NIL |
GN3K-3594-MONOMER | Hypothetical protein | 6.0872053e-6 | 2.0 | P06130 | 0.115177213321922 | 3.0 | 0.105200335 | 399 | NIL | NIL |
Evidence for , EC# EC-1.17.1.4RXN0-901
Evidence for , EC# EC-1.17.1.4RXN-7682
purine deoxyribonucleosides degradation
Total # of reactions in pathway = 7
Present reactions: 6
Reaction | Protein(s) |
DEOXYGUANPHOSPHOR-RXN |
(# |
DEOXYADENPHOSPHOR-RXN |
(# |
DEOXYINOPHOSPHOR-RXN |
(# |
D-PPENTOMUT-RXN |
(# |
DEOXYRIBOSE-P-ALD-RXN |
(# |
ACETALD-DEHYDROG-RXN |
(# |
Missing reactions: 1
ADDALT-RXN |
Total # of reactions in pathway = 6
Present reactions: 3
Reaction | Protein(s) |
PPPGPPHYDRO-RXN |
(# |
GTPPYPHOSKIN-RXN |
(# |
GDPPYPHOSKIN-RXN |
(# |
Missing reactions: 3
PPGPPSYN-RXN |
RXN0-6427 |
GDPKIN-RXN |
Evidence for , EC# EC-3.1.7.2PPGPPSYN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 0.0020121129 | 1.0 | Q9VAM9 | 0.00815338877069646 | 1.0 | 0.46368715 | 179 | NIL | NIL |
GN3K-5165-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | O51216 | 0.280836587797692 | 1.0 | 0.12443778 | 667 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | Q54089 | 0.492593786821348 | 1.0 | 0.13261163 | 739 | NIL | NIL |
Evidence for guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase, EC# EC-3.1.7.2RXN0-6427
Evidence for , EC# EC-2.7.4.6GDPKIN-RXN
phosphopantothenate biosynthesis II
Total # of reactions in pathway = 3
Present reactions: 1
Reaction | Protein(s) |
PANTOTHENATE-KIN-RXN |
(# |
Missing reactions: 2
1.1.1.168-RXN |
RXN-6401 |
Evidence for , EC# EC-1.1.1.1681.1.1.168-RXN
Evidence for , EC# EC-6.3.2RXN-6401
phosphatidylglycerol biosynthesis II (non-plastidic)
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
PWY-5667 | NIL |
PHOSPHAGLYPSYN-RXN |
(# |
Missing reactions: 1
PGPPHOSPHA-RXN |
Evidence for , EC# EC-3.1.3.27PGPPHOSPHA-RXN
phosphatidylglycerol biosynthesis I (plastidic)
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
PWY0-1319 | NIL |
PHOSPHAGLYPSYN-RXN |
(# |
Missing reactions: 1
PGPPHOSPHA-RXN |
Evidence for , EC# EC-3.1.3.27PGPPHOSPHA-RXN
Total # of reactions in pathway = 4
Present reactions: 2
Reaction | Protein(s) |
PHEAMINOTRANS-RXN |
(# |
RXN-7700 |
(# |
Missing reactions: 2
PHENYLPYRUVATE-DECARBOXYLASE-RXN |
2.6.1.58-RXN |
Evidence for , EC# EC-4.1.1.43PHENYLPYRUVATE-DECARBOXYLASE-RXN
Evidence for , EC# EC-2.6.1.582.6.1.58-RXN
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
PHEAMINOTRANS-RXN |
(# |
CHORISMATEMUT-RXN |
(# |
Missing reactions: 1
PREPHENATEDEHYDRAT-RXN |
Evidence for , EC# EC-4.2.1.51PREPHENATEDEHYDRAT-RXN
peptidoglycan biosynthesis V (β-lactam resistance)
Total # of reactions in pathway = 10
Present reactions: 3
Reaction | Protein(s) |
PWY-6386 | NIL |
RXN-11347 |
(# |
RXN-11346 |
(# |
Missing reactions: 7
3.4.17.14-RXN |
RXN-11345 |
RXN-11344 |
RXN-11343 |
RXN-11348 |
RXN-11349 |
2.4.1.129-RXN |
Evidence for , EC# EC-3.4.17.143.4.17.14-RXN
Evidence for , EC# EC-6.3.1.12RXN-11344
Evidence for , EC# EC-2.4.1.129RXN-11348
Evidence for , EC# EC-3.4.16RXN-11349
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 0.0020121129 | 1.0 | D0ANH0 | 3.58254466072307e-8 | 1.0 | 0.43776825 | 466 | NIL | NIL |
Evidence for Peptidoglycan glycosyltransferase, EC# EC-2.4.1.1292.4.1.129-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5129-MONOMER | Vitamin B12 dependent met | 5.8898037e-5 | 1.0 | Q9R744 | 1.05530452851389e-4 | 1.0 | 0.13204952 | 727 | NIL | NIL |
peptidoglycan biosynthesis III (mycobacteria)
Total # of reactions in pathway = 7
Present reactions: 2
Reaction | Protein(s) |
RXN-11029 |
(# |
PWY-6387 | NIL |
Missing reactions: 5
RXN-11028 |
RXN-11030 |
RXN-11031 |
RXN-11301 |
2.4.1.129-RXN |
Evidence for , EC# EC-2.7.8RXN-11028
Evidence for , EC# EC-2.4.1RXN-11301
Evidence for Peptidoglycan glycosyltransferase, EC# EC-2.4.1.1292.4.1.129-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5129-MONOMER | Vitamin B12 dependent met | 5.8898037e-5 | 1.0 | Q9R744 | 1.05530452851389e-4 | 1.0 | 0.13204952 | 727 | NIL | NIL |
peptidoglycan biosynthesis I (meso-diaminopimelate containing)
Total # of reactions in pathway = 6
Present reactions: 4
Reaction | Protein(s) |
NACGLCTRANS-RXN |
(# |
PHOSNACMURPENTATRANS-RXN |
(# |
RXN-11302 |
(# |
PWY-6387 | NIL |
Missing reactions: 2
RXN0-5405 |
2.4.1.129-RXN |
Evidence for , EC# EC-2.4.1.129RXN0-5405
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5129-MONOMER | Vitamin B12 dependent met | 0.34008172 | 9.0 | P0AD68 | 6.44490786093615e-19 | 1.0 | 0.327401 | 588 | NIL | NIL |
GN3K-4771-MONOMER | Cell division protein ABC | 1.7231443e-5 | 1.0 | Q9MUV9 | 0.198721303364715 | 2.0 | 0.0819398 | 598 | NIL | NIL |
Evidence for Peptidoglycan glycosyltransferase, EC# EC-2.4.1.1292.4.1.129-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5129-MONOMER | Vitamin B12 dependent met | 5.8898037e-5 | 1.0 | Q9R744 | 1.05530452851389e-4 | 1.0 | 0.13204952 | 727 | NIL | NIL |
pentose phosphate pathway (non-oxidative branch)
Total # of reactions in pathway = 5
Present reactions: 3
Reaction | Protein(s) |
TRANSALDOL-RXN |
(# |
RIBULP3EPIM-RXN |
(# |
RIB5PISOM-RXN |
(# |
Missing reactions: 2
2TRANSKETO-RXN |
1TRANSKETO-RXN |
Evidence for D-Fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase, EC# EC-2.2.1.12TRANSKETO-RXN
Evidence for , EC# EC-2.2.1.11TRANSKETO-RXN
NAD/NADH phosphorylation and dephosphorylation
Total # of reactions in pathway = 6
Present reactions: 2
Reaction | Protein(s) |
NAD-KIN-RXN |
(# |
NADH-DEHYDROG-A-RXN |
(# |
Missing reactions: 4
PYRNUTRANSHYDROGEN-RXN |
NADH-KINASE-RXN |
RXN-7703 |
RXN-5822 |
Evidence for , EC# EC-1.6.1.1PYRNUTRANSHYDROGEN-RXN
Evidence for , EC# EC-2.7.1.86NADH-KINASE-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5271-MONOMER | Transposase | 6.258456e-5 | 1.0 | Q56YN3 | 0.072440834630405 | 1.0 | 0.099236645 | 524 | NIL | NIL |
Evidence for , EC# EC-3.1.3RXN-7703
Evidence for NADP phosphatase, EC# EC-3.1.3RXN-5822
Total # of reactions in pathway = 8
Present reactions: 3
Reaction | Protein(s) |
NICONUCADENYLYLTRAN-RXN |
(# |
NICOTINATEPRIBOSYLTRANS-RXN |
(# |
NAD-SYNTH-GLN-RXN |
(# |
Missing reactions: 5
NMNAMIDOHYDRO-RXN |
NADPYROPHOSPHAT-RXN |
NADNUCLEOSID-RXN |
NMNNUCLEOSID-RXN |
NICOTINAMID-RXN |
Evidence for , EC# EC-3.5.1.42NMNAMIDOHYDRO-RXN
Evidence for , EC# EC-3.6.1.22NADPYROPHOSPHAT-RXN
Evidence for , EC# EC-3.2.2.5NADNUCLEOSID-RXN
Evidence for , EC# EC-3.2.2.14NMNNUCLEOSID-RXN
Evidence for , EC# EC-3.5.1.19NICOTINAMID-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4100-MONOMER | Thiamin pyrophosphokinase | 0.0029834409 | 2.0 | Q9USS0 | 5.33590271496223e-4 | 1.0 | 0.54263467 | 220 | NIL | NIL |
GN3K-3224-MONOMER | Hydroxylamine reductase | 6.258456e-5 | 1.0 | P27765 | 0.523266594565834 | 1.0 | 0.03557312 | 506 | NIL | NIL |
NAD biosynthesis I (from aspartate)
Total # of reactions in pathway = 6
Present reactions: 4
Reaction | Protein(s) |
NICONUCADENYLYLTRAN-RXN |
(# |
NAD-SYNTH-GLN-RXN |
(# |
NAD-SYNTH-NH3-RXN |
(# |
QUINOPRIBOTRANS-RXN |
(# |
Missing reactions: 2
QUINOLINATE-SYNTHA-RXN |
L-ASPARTATE-OXID-RXN |
Evidence for , EC# EC-2.5.1.72QUINOLINATE-SYNTHA-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3576-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q185P4 | 0.161091475745674 | 1.0 | 0.14473684 | 304 | NIL | NIL |
Evidence for , EC# EC-1.4.3.16L-ASPARTATE-OXID-RXN
Total # of reactions in pathway = 16
Present reactions: 6
Reaction | Protein(s) |
PHOSACETYLTRANS-RXN |
(# |
ACETATEKIN-RXN |
(# |
PYRUVFORMLY-RXN |
(# |
ACETALD-DEHYDROG-RXN |
(# |
ALCOHOL-DEHYDROG-RXN |
(# |
PEPDEPHOS-RXN |
(# |
Missing reactions: 10
DLACTDEHYDROGNAD-RXN |
FUMHYDR-RXN |
PEPCARBOX-RXN |
FHLMULTI-RXN |
R601-RXN |
CITSYN-RXN |
ACONITATEDEHYDR-RXN |
ACONITATEHYDR-RXN |
ISOCITDEH-RXN |
MALATE-DEH-RXN |
Evidence for , EC# EC-1.1.1.28DLACTDEHYDROGNAD-RXN
Evidence for , EC# EC-4.2.1.2FUMHYDR-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5165-MONOMER | Hypothetical protein | 1.4501007e-4 | 1.0 | O66271 | 0.380573426357479 | 1.0 | 0.2274678 | 466 | NIL | NIL |
Evidence for , EC# EC-4.1.1.31PEPCARBOX-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3399-MONOMER | orf00617 | 6.258456e-5 | 1.0 | A4VN44 | 0.0625675267997296 | 1.0 | 0.07736064 | 879 | NIL | NIL |
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3942-MONOMER | orf01131 | 9.6593995e-4 | 1.0 | P16432 | 0.00229655308914807 | 1.0 | 0.3611111 | 180 | NIL | NIL |
GN3K-3594-MONOMER | Hypothetical protein | 3.9928098e-5 | 1.0 | P16432 | 0.0164534361835148 | 2.0 | 0.28333333 | 180 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 1.4988173e-5 | 1.0 | P16432 | 0.0264730727019621 | 3.0 | 0.2888889 | 180 | NIL | NIL |
Evidence for , EC# EC-1.3.5.4R601-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5271-MONOMER | Transposase | 1.4501007e-4 | 1.0 | P0AC47 | 0.0184111090134787 | 1.0 | 0.29098362 | 244 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 1.6216387e-5 | 1.0 | P0AC47 | 0.0869116193842571 | 2.0 | 0.18852459 | 244 | NIL | NIL |
Evidence for , EC# EC-2.3.3.1CITSYN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5165-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q5UZI9 | 0.0714995046188795 | 1.0 | 0.11811024 | 381 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | O34002 | 0.35247478461291 | 1.0 | 0.14511873 | 379 | NIL | NIL |
GN3K-4081-MONOMER | orf01259 | 5.8898037e-5 | 1.0 | P24118 | 0.136076226683792 | 1.0 | 0.16233766 | 462 | NIL | NIL |
Evidence for , EC# EC-4.2.1.3ACONITATEDEHYDR-RXN
Evidence for , EC# EC-4.2.1.3ACONITATEHYDR-RXN
Evidence for , EC# EC-1.1.1.42ISOCITDEH-RXN
Evidence for , EC# EC-1.1.1.37MALATE-DEH-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 9.6593995e-4 | 1.0 | A7HT37 | 0.93398296100543 | 1.0 | 0.34234235 | 333 | NIL | NIL |
GN3K-4029-MONOMER | Chromosome partition prot | 9.6593995e-4 | 1.0 | Q54GE6 | 0.224148095668757 | 1.0 | 0.3657289 | 391 | NIL | NIL |
GN3K-4295-MONOMER | Hypothetical protein | 1.4501007e-4 | 1.0 | P83778 | 0.133543237525046 | 1.0 | 0.27893174 | 337 | NIL | NIL |
GN3K-5164-MONOMER | Lysyl-tRNA synthetase | 3.9928098e-5 | 1.0 | P83778 | 0.164517846222479 | 2.0 | 0.27893174 | 337 | NIL | NIL |
Total # of reactions in pathway = 4
Present reactions: 2
Reaction | Protein(s) |
RXN-8641 |
(# |
D-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN | NIL |
Missing reactions: 2
D-LACTALDEHYDE-DEHYDROGENASE-RXN |
LACTALDEHYDE-OXI-RXN |
Evidence for , EC# EC-1.1.1.78D-LACTALDEHYDE-DEHYDROGENASE-RXN
Evidence for LACTALDEHYDE-OXI-RXN
Total # of reactions in pathway = 3
Present reactions: 1
Reaction | Protein(s) |
L-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN |
(# |
Missing reactions: 2
LACTALDDEHYDROG-RXN |
1.1.1.283-RXN |
Evidence for , EC# EC-1.2.1.22LACTALDDEHYDROG-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5165-MONOMER | Hypothetical protein | 6.258456e-5 | 1.0 | A4FW36 | 0.595630434591078 | 1.0 | 0.077419356 | 465 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | P25553 | 0.359014593587476 | 1.0 | 0.13778706 | 479 | NIL | NIL |
Evidence for , EC# EC-1.1.1.2831.1.1.283-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 1.4501007e-4 | 1.0 | P83775 | 0.678763824434476 | 1.0 | 0.20821114 | 341 | NIL | NIL |
GN3K-3581-MONOMER | Fructokinase | 5.8898037e-5 | 1.0 | O32210 | 1.31646058979479e-9 | 1.0 | 0.16666667 | 276 | NIL | NIL |
GN3K-3580-MONOMER | Sodium/alanine symporter | 1.6216387e-5 | 1.0 | O32210 | 6.2756530351221e-4 | 2.0 | 0.123188406 | 276 | NIL | NIL |
methylerythritol phosphate pathway
Total # of reactions in pathway = 9
Present reactions: 8
Reaction | Protein(s) |
DXS-RXN |
(# |
DXPREDISOM-RXN |
(# |
RXN0-302 |
(# |
RXN0-882 |
(# |
RXN0-884 |
(# |
ISPH2-RXN |
(# |
2.7.1.148-RXN |
(# |
2.7.7.60-RXN |
(# |
Missing reactions: 1
IPPISOM-RXN |
Evidence for , EC# EC-5.3.3.2IPPISOM-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4870-MONOMER | #Stage II sporulation pro | 1.4501007e-4 | 1.0 | Q8TX99 | 0.61756701907092 | 1.0 | 0.23013699 | 365 | NIL | NIL |
GN3K-5032-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q6L1S1 | 0.138641447772347 | 1.0 | 0.18911175 | 349 | NIL | NIL |
Total # of reactions in pathway = 6
Present reactions: 3
Reaction | Protein(s) |
HOMOSERKIN-RXN |
(# |
HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN |
(# |
MMUM-RXN |
(# |
Missing reactions: 3
CYSPH-RXN |
CYSTATHIONINE-BETA-LYASE-RXN |
HOMOCYSMET-RXN |
Evidence for , EC# EC-2.5.1CYSPH-RXN
Evidence for , EC# EC-4.4.1.8CYSTATHIONINE-BETA-LYASE-RXN
Evidence for , EC# EC-2.1.1.14HOMOCYSMET-RXN
Total # of reactions in pathway = 8
Present reactions: 6
Reaction | Protein(s) |
ASPARTATEKIN-RXN |
(# |
ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN |
(# |
DIHYDRODIPICSYN-RXN |
(# |
RXN-7737 |
(# |
DIAMINOPIMEPIM-RXN |
(# |
DIHYDROPICRED-RXN |
(# |
Missing reactions: 2
DIAMINOPIMDECARB-RXN |
RXN-13462 |
Evidence for , EC# EC-4.1.1.20DIAMINOPIMDECARB-RXN
Evidence for (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinate dehydratase, EC# EC-4.2.1RXN-13462
lactose and galactose degradation I
Total # of reactions in pathway = 4
Present reactions: 1
Reaction | Protein(s) |
LACTOSE-6-PHOSPHATE-ISOMERASE-RXN |
(# |
Missing reactions: 3
TAGAKIN-RXN |
LACTOSE6P-HYDROXY-RXN |
TAGAALDOL-RXN |
Evidence for , EC# EC-2.7.1.144TAGAKIN-RXN
Evidence for 6-phospho-lactosidase, EC# EC-3.2.1.85LACTOSE6P-HYDROXY-RXN
Evidence for , EC# EC-4.1.2.40TAGAALDOL-RXN
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
ASPARTATEKIN-RXN |
(# |
ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN |
(# |
Missing reactions: 1
HOMOSERDEHYDROG-RXN |
Evidence for , EC# EC-1.1.1.3HOMOSERDEHYDROG-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4877-MONOMER | Protein of unknown functi | 0.03088513 | 3.0 | P00561 | 1.70057801696634e-16 | 1.0 | 0.33311227 | 820 | NIL | NIL |
GN3K-3708-MONOMER | Transcriptional regulator | 5.8898037e-5 | 1.0 | P31116 | 0.337071712370255 | 1.0 | 0.15598886 | 359 | NIL | NIL |
Total # of reactions in pathway = 4
Present reactions: 3
Reaction | Protein(s) |
PWY-5481 | NIL |
GLUCOKIN-RXN |
(# |
PWY-5484 | NIL |
Missing reactions: 1
PGLUCISOM-RXN |
Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN
Total # of reactions in pathway = 4
Present reactions: 3
Reaction | Protein(s) |
HISTIDINE-AMMONIA-LYASE-RXN |
(# |
UROCANATE-HYDRATASE-RXN |
(# |
IMIDAZOLONEPROPIONASE-RXN |
(# |
Missing reactions: 1
FORMIMINOGLUTAMASE-RXN |
Evidence for , EC# EC-3.5.3.8FORMIMINOGLUTAMASE-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 9.6593995e-4 | 1.0 | Q893K6 | 0.457078520038079 | 1.0 | 0.30473372 | 338 | NIL | NIL |
Total # of reactions in pathway = 10
Present reactions: 1
Reaction | Protein(s) |
HISTIDPHOS-RXN |
(# |
Missing reactions: 9
HISTALDEHYD-RXN |
HISTOLDEHYD-RXN |
HISTAMINOTRANS-RXN |
IMIDPHOSDEHYD-RXN |
GLUTAMIDOTRANS-RXN |
PRIBFAICARPISOM-RXN |
HISTPRATPHYD-RXN |
HISTCYCLOHYD-RXN |
ATPPHOSPHORIBOSYLTRANS-RXN |
Evidence for Histidinal dehydrogenaseHISTALDEHYD-RXN
Evidence for Histidinol dehydrogenaseHISTOLDEHYD-RXN
Evidence for , EC# EC-2.6.1.9HISTAMINOTRANS-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4536-MONOMER | Phage protein, integrase | 0.024500009 | 15.0 | B8DC01 | 2.65276037170286e-5 | 1.0 | 0.32310086 | 360 | NIL | NIL |
GN3K-4091-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | B9DK21 | 0.81501397813037 | 1.0 | 0.18361582 | 354 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | Q0AM22 | 0.138371597403137 | 1.0 | 0.11878453 | 362 | NIL | NIL |
GN3K-4538-MONOMER | Ribonuclease R | 5.8898037e-5 | 1.0 | A6LUF3 | 0.035006116858152 | 1.0 | 0.1452514 | 358 | NIL | NIL |
GN3K-3850-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q4FQF9 | 0.335795906480026 | 1.0 | 0.14323607 | 377 | NIL | NIL |
GN3K-3399-MONOMER | orf00617 | 3.9928098e-5 | 1.0 | Q0BVW4 | 0.597789495648791 | 2.0 | 0.21081081 | 370 | NIL | NIL |
GN3K-3602-MONOMER | Hypothetical protein | 1.7231443e-5 | 1.0 | Q8EQB9 | 0.463385939182709 | 2.0 | 0.0989011 | 364 | NIL | NIL |
GN3K-4120-MONOMER | Uracil phosphoribosyltran | 1.6216387e-5 | 3.0 | B9EAC1 | 0.225778174188775 | 1.3333334 | 0.15161668 | 350 | NIL | NIL |
Evidence for , EC# EC-4.2.1.19IMIDPHOSDEHYD-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 2.6612708e-4 | 1.0 | Q65RB3 | 0.767182793394533 | 2.0 | 0.3561644 | 365 | NIL | NIL |
GN3K-3569-MONOMER | Hypothetical protein | 1.4501007e-4 | 2.0 | Q1IZQ5 | 0.0596324067857223 | 1.0 | 0.2560699 | 203 | NIL | NIL |
Evidence for , EC# EC-2.4.2GLUTAMIDOTRANS-RXN
Evidence for , EC# EC-5.3.1.16PRIBFAICARPISOM-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 9.6593995e-4 | 1.0 | Q8R884 | 0.748610656074075 | 1.0 | 0.39166668 | 240 | NIL | NIL |
GN3K-4067-MONOMER | Geranyltranstransferase | 9.6593995e-4 | 1.0 | B1I557 | 0.661265967318539 | 1.0 | 0.35496184 | 262 | NIL | NIL |
GN3K-4103-MONOMER | Serine/threonine protein | 9.6593995e-4 | 1.0 | B1H0E7 | 0.607277275416951 | 1.0 | 0.36065573 | 244 | NIL | NIL |
GN3K-3399-MONOMER | orf00617 | 1.4501007e-4 | 2.0 | Q04W72 | 0.0704390569545743 | 1.0 | 0.27913138 | 241 | NIL | NIL |
GN3K-5082-MONOMER | Stage 0 sporulation prote | 5.8898037e-5 | 1.0 | Q5QWQ6 | 0.100760005616275 | 1.0 | 0.17959183 | 245 | NIL | NIL |
Evidence for , EC# EC-3.6.1.31HISTPRATPHYD-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 0.0029834409 | 1.0 | Q31E63 | 0.0985624219290555 | 1.0 | 0.5840708 | 113 | NIL | NIL |
Evidence for , EC# EC-3.5.4.19HISTCYCLOHYD-RXN
Evidence for , EC# EC-2.4.2.17ATPPHOSPHORIBOSYLTRANS-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5127-MONOMER | S-ribosylhomocysteinase, | 1.4501007e-4 | 3.0 | B8D111 | 0.0225097258333406 | 1.0 | 0.29853323 | 223 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 1.6216387e-5 | 2.0 | A9BJZ4 | 0.190275159342593 | 1.5 | 0.14948751 | 210 | NIL | NIL |
Total # of reactions in pathway = 18
Present reactions: 11
Reaction | Protein(s) |
RIBULP3EPIM-RXN |
(# |
GAPOXNPHOSPHN-RXN |
(# |
PHOSGLYPHOS-RXN |
(# |
3PGAREARR-RXN |
(# |
2PGADEHYDRAT-RXN |
(# |
PEPDEPHOS-RXN |
(# |
PHOSACETYLTRANS-RXN |
(# |
ACETALD-DEHYDROG-RXN |
(# |
ALCOHOL-DEHYDROG-RXN |
(# |
L-LACTATE-DEHYDROGENASE-RXN |
(# |
GLUCOKIN-RXN |
(# |
Missing reactions: 7
6PGLUCONDEHYDROG-RXN |
PHOSPHOKETOLASE-RXN |
GLU6PDEHYDROG-RXN |
6PGLUCONOLACT-RXN |
FRUCTOKINASE-RXN |
PGLUCISOM-RXN |
DLACTDEHYDROGNAD-RXN |
Evidence for phosphogluconate dehydrogenase [NAD(P)+-dependent, decarboxylating], EC# EC-1.1.16PGLUCONDEHYDROG-RXN
Evidence for , EC# EC-4.1.2.9PHOSPHOKETOLASE-RXN
Evidence for , EC# EC-1.1.1.49GLU6PDEHYDROG-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 1.4501007e-4 | 1.0 | Q9Z3S2 | 0.0491119781323875 | 1.0 | 0.23421589 | 491 | NIL | NIL |
GN3K-3973-MONOMER | Hypothetical protein | 6.258456e-5 | 1.0 | O83491 | 0.0534297897143757 | 1.0 | 0.07378641 | 515 | NIL | NIL |
Evidence for , EC# EC-3.1.1.316PGLUCONOLACT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3399-MONOMER | orf00617 | 0.97360426 | 16.0 | Q49700 | 1.07661706264504e-15 | 1.0 | 0.7741239 | 247 | NIL | NIL |
Evidence for fructokinase, EC# EC-2.7.1.4FRUCTOKINASE-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 1.4501007e-4 | 1.0 | Q9ZHJ6 | 0.21075339287014 | 1.0 | 0.23076923 | 312 | NIL | NIL |
Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN
Evidence for , EC# EC-1.1.1.28DLACTDEHYDROGNAD-RXN
heme biosynthesis from uroporphyrinogen-III II
Total # of reactions in pathway = 4
Present reactions: 2
Reaction | Protein(s) |
PROTOHEMEFERROCHELAT-RXN |
(# |
HEMN-RXN |
(# |
Missing reactions: 2
UROGENDECARBOX-RXN |
RXN0-6259 |
Evidence for , EC# EC-4.1.1.37UROGENDECARBOX-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5422-MONOMER | Uroporphyrinogen-III meth | 1.4501007e-4 | 1.0 | Q11X05 | 0.0361039359937739 | 1.0 | 0.22674419 | 344 | NIL | NIL |
GN3K-4012-MONOMER | Capsule biosynthesis prot | 1.4501007e-4 | 1.0 | Q5GTT1 | 0.806961061597943 | 1.0 | 0.29971182 | 347 | NIL | NIL |
GN3K-3172-MONOMER | CDP-diacylglycerol--glyce | 6.258456e-5 | 1.0 | P29680 | 0.41117452696262 | 1.0 | 0.059322033 | 354 | NIL | NIL |
Evidence for , EC# EC-1.3.5.3RXN0-6259
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3587-MONOMER | Aluminum resistance prote | 1.4501007e-4 | 1.0 | P0ACB4 | 0.031056071722715 | 1.0 | 0.28176796 | 181 | NIL | NIL |
heme biosynthesis from uroporphyrinogen-III I
Total # of reactions in pathway = 4
Present reactions: 2
Reaction | Protein(s) |
PROTOHEMEFERROCHELAT-RXN |
(# |
RXN0-1461 |
(# |
Missing reactions: 2
UROGENDECARBOX-RXN |
PROTOPORGENOXI-RXN |
Evidence for , EC# EC-4.1.1.37UROGENDECARBOX-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5422-MONOMER | Uroporphyrinogen-III meth | 1.4501007e-4 | 1.0 | Q11X05 | 0.0361039359937739 | 1.0 | 0.22674419 | 344 | NIL | NIL |
GN3K-4012-MONOMER | Capsule biosynthesis prot | 1.4501007e-4 | 1.0 | Q5GTT1 | 0.806961061597943 | 1.0 | 0.29971182 | 347 | NIL | NIL |
GN3K-3172-MONOMER | CDP-diacylglycerol--glyce | 6.258456e-5 | 1.0 | P29680 | 0.41117452696262 | 1.0 | 0.059322033 | 354 | NIL | NIL |
Evidence for , EC# EC-1.3.3.4PROTOPORGENOXI-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3587-MONOMER | Aluminum resistance prote | 1.4501007e-4 | 1.0 | P0ACB4 | 0.031056071722715 | 1.0 | 0.28176796 | 181 | NIL | NIL |
guanosine nucleotides degradation III
Total # of reactions in pathway = 4
Present reactions: 1
Reaction | Protein(s) |
RXN-7609 |
(# |
Missing reactions: 3
GUANINE-DEAMINASE-RXN |
RXN0-901 |
RXN0-5199 |
Evidence for , EC# EC-3.5.4.3GUANINE-DEAMINASE-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | Q9WTT6 | 0.76178760181823 | 1.0 | 0.11013216 | 454 | NIL | NIL |
Evidence for , EC# EC-1.17.1.4RXN0-901
Evidence for guanosine phosphorylase, EC# EC-2.4.2.1RXN0-5199
guanosine nucleotides de novo biosynthesis
Total # of reactions in pathway = 9
Present reactions: 6
Reaction | Protein(s) |
IMP-DEHYDROG-RXN |
(# |
GMP-SYN-GLUT-RXN |
(# |
GUANYL-KIN-RXN |
(# |
GDPREDUCT-RXN | NIL |
RXN0-746 | NIL |
RXN0-748 | NIL |
Missing reactions: 3
GMP-SYN-NH3-RXN |
GDPKIN-RXN |
DGDPKIN-RXN |
Evidence for , EC# EC-6.3.4.1GMP-SYN-NH3-RXN
Evidence for , EC# EC-2.7.4.6GDPKIN-RXN
Evidence for , EC# EC-2.7.4.6DGDPKIN-RXN
guanine and guanosine salvage I
Total # of reactions in pathway = 2
Present reactions: 1
Reaction | Protein(s) |
GUANPRIBOSYLTRAN-RXN |
(# |
Missing reactions: 1
RXN0-5199 |
Evidence for guanosine phosphorylase, EC# EC-2.4.2.1RXN0-5199
Total # of reactions in pathway = 10
Present reactions: 9
Reaction | Protein(s) |
6PFRUCTPHOS-RXN |
(# |
F16ALDOLASE-RXN |
(# |
TRIOSEPISOMERIZATION-RXN |
(# |
GAPOXNPHOSPHN-RXN |
(# |
PHOSGLYPHOS-RXN |
(# |
3PGAREARR-RXN |
(# |
2PGADEHYDRAT-RXN |
(# |
PEPDEPHOS-RXN |
(# |
1.2.1.9-RXN |
(# |
Missing reactions: 1
2.7.1.90-RXN |
Evidence for , EC# EC-2.7.1.902.7.1.90-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 2.0 | Q9KH71 | 0.0973721449398092 | 1.0 | 0.13407099 | 346 | NIL | NIL |
Total # of reactions in pathway = 10
Present reactions: 9
Reaction | Protein(s) |
GLUCOKIN-RXN |
(# |
6PFRUCTPHOS-RXN |
(# |
F16ALDOLASE-RXN |
(# |
TRIOSEPISOMERIZATION-RXN |
(# |
GAPOXNPHOSPHN-RXN |
(# |
PHOSGLYPHOS-RXN |
(# |
3PGAREARR-RXN |
(# |
2PGADEHYDRAT-RXN |
(# |
PEPDEPHOS-RXN |
(# |
Missing reactions: 1
PGLUCISOM-RXN |
Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN
Total # of reactions in pathway = 5
Present reactions: 2
Reaction | Protein(s) |
GLYCOPHOSPHORYL-RXN |
(# |
RXN-9025 |
(# |
Missing reactions: 3
3.2.1.33-RXN |
RXN-9023 |
PHOSPHOGLUCMUT-RXN |
Evidence for , EC# EC-3.2.1.333.2.1.33-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 6.258456e-5 | 2.0 | Q06625 | 0.0402713514228128 | 1.0 | 0.05336888 | 1536 | NIL | NIL |
Evidence for , EC# EC-2.4.1.25RXN-9023
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 0.077747874 | 3.0 | O86956 | 5.21965510766094e-35 | 1.0 | 0.32064715 | 442 | NIL | NIL |
GN3K-5261-MONOMER | Transcriptional regulator | 0.01796768 | 1.0 | O86956 | 1.14099767422618e-13 | 2.0 | 0.4954751 | 442 | NIL | NIL |
GN3K-5251-MONOMER | ABC transporter, ATP-bind | 1.4988173e-5 | 1.0 | O86956 | 4.30849489812474e-6 | 3.0 | 0.21493213 | 442 | NIL | NIL |
Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5423-MONOMER | Porphobilinogen deaminase | 6.258456e-5 | 1.0 | Q03262 | 0.721210927867915 | 1.0 | 0.096463025 | 622 | NIL | NIL |
GN3K-4295-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q49WH7 | 0.382450792993071 | 1.0 | 0.17391305 | 552 | NIL | NIL |
Total # of reactions in pathway = 7
Present reactions: 4
Reaction | Protein(s) |
GLYCOPHOSPHORYL-RXN |
(# |
RXN0-5182 |
(# |
RXN0-5183 |
(# |
GLUCOKIN-RXN |
(# |
Missing reactions: 3
AMYLOMALT-RXN |
PHOSPHOGLUCMUT-RXN |
RXN0-5146 |
Evidence for 4-α-glucanotransferase, EC# EC-2.4.1.25AMYLOMALT-RXN
Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5423-MONOMER | Porphobilinogen deaminase | 6.258456e-5 | 1.0 | Q03262 | 0.721210927867915 | 1.0 | 0.096463025 | 622 | NIL | NIL |
GN3K-4295-MONOMER | Hypothetical protein | 5.8898037e-5 | 1.0 | Q49WH7 | 0.382450792993071 | 1.0 | 0.17391305 | 552 | NIL | NIL |
Evidence for , EC# EC-3.2.1.33RXN0-5146
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 0.016743753 | 1.0 | P15067 | 1.11056907304731e-4 | 1.0 | 0.62709284 | 657 | NIL | NIL |
GN3K-5251-MONOMER | ABC transporter, ATP-bind | 5.547801e-4 | 1.0 | P15067 | 7.2588129675081e-4 | 2.0 | 0.40943682 | 657 | NIL | NIL |
Total # of reactions in pathway = 2
Present reactions: 1
Reaction | Protein(s) |
RXN0-5260 |
(# |
Missing reactions: 1
1.1.1.8-RXN |
Evidence for , EC# EC-1.1.1.81.1.1.8-RXN
Total # of reactions in pathway = 12
Present reactions: 8
Reaction | Protein(s) |
F16BDEPHOS-RXN |
(# |
F16ALDOLASE-RXN |
(# |
GAPOXNPHOSPHN-RXN |
(# |
PHOSGLYPHOS-RXN |
(# |
3PGAREARR-RXN |
(# |
2PGADEHYDRAT-RXN |
(# |
PEPCARBOXYKIN-RXN |
(# |
PEPSYNTH-RXN |
(# |
Missing reactions: 4
PGLUCISOM-RXN |
MALATE-DEH-RXN |
MALIC-NAD-RXN |
MALIC-NADP-RXN |
Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN
Evidence for , EC# EC-1.1.1.37MALATE-DEH-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 9.6593995e-4 | 1.0 | A7HT37 | 0.93398296100543 | 1.0 | 0.34234235 | 333 | NIL | NIL |
GN3K-4029-MONOMER | Chromosome partition prot | 9.6593995e-4 | 1.0 | Q54GE6 | 0.224148095668757 | 1.0 | 0.3657289 | 391 | NIL | NIL |
GN3K-4295-MONOMER | Hypothetical protein | 1.4501007e-4 | 1.0 | P83778 | 0.133543237525046 | 1.0 | 0.27893174 | 337 | NIL | NIL |
GN3K-5164-MONOMER | Lysyl-tRNA synthetase | 3.9928098e-5 | 1.0 | P83778 | 0.164517846222479 | 2.0 | 0.27893174 | 337 | NIL | NIL |
Evidence for , EC# EC-1.1.1.38MALIC-NAD-RXN
Evidence for , EC# EC-1.1.1.40MALIC-NADP-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | Q9ZDF6 | 0.906119646906433 | 1.0 | 0.16558018 | 767 | NIL | NIL |
Total # of reactions in pathway = 6
Present reactions: 3
Reaction | Protein(s) |
GALACTOKIN-RXN |
(# |
UDPGLUCEPIM-RXN |
(# |
GLUC1PURIDYLTRANS-RXN |
(# |
Missing reactions: 3
UTPHEXPURIDYLYLTRANS-RXN |
SUCROSE-SYNTHASE-RXN |
UGD-RXN |
Evidence for , EC# EC-2.7.7.10UTPHEXPURIDYLYLTRANS-RXN
Evidence for Sucrose synthase, EC# EC-2.4.1.13SUCROSE-SYNTHASE-RXN
Evidence for , EC# EC-1.1.1.22UGD-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 5.8898037e-5 | 1.0 | O54068 | 0.320376022809788 | 1.0 | 0.112128146 | 437 | NIL | NIL |
Total # of reactions in pathway = 12
Present reactions: 7
Reaction | Protein(s) |
FORMATETHFLIG-RXN |
(# |
METHENYLTHFCYCLOHYDRO-RXN |
(# |
GLYOHMETRANS-RXN |
(# |
METHYLENETHFDEHYDROG-NADP-RXN |
(# |
1.5.1.20-RXN |
(# |
HOMOCYSMETB12-RXN |
(# |
5-FORMYL-THF-CYCLO-LIGASE-RXN |
(# |
Missing reactions: 5
FORMYLTHFDEFORMYL-RXN |
DIHYDROFOLATEREDUCT-RXN |
GCVMULTI-RXN |
THYMIDYLATESYN-RXN |
DIHYDROFOLATESYNTH-RXN |
Evidence for formyltetrahydrofolate deformylase, EC# EC-3.5.1.10FORMYLTHFDEFORMYL-RXN
Evidence for , EC# EC-1.5.1.3DIHYDROFOLATEREDUCT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5165-MONOMER | Hypothetical protein | 1.4501007e-4 | 1.0 | P13955 | 0.917500922905107 | 1.0 | 0.2857143 | 161 | NIL | NIL |
GN3K-5037-MONOMER | Radical SAM (S-adenosylme | 1.4501007e-4 | 1.0 | Q9U8B8 | 0.549885792997151 | 1.0 | 0.28108108 | 185 | NIL | NIL |
GN3K-4305-MONOMER | ABC transporter, ATP-bind | 1.4501007e-4 | 1.0 | P43791 | 0.0729869211974513 | 1.0 | 0.2375 | 160 | NIL | NIL |
GN3K-4081-MONOMER | orf01259 | 1.4501007e-4 | 1.0 | Q5V600 | 0.237438219287171 | 1.0 | 0.2754491 | 167 | NIL | NIL |
Evidence for , EC# EC-2.1.1.45THYMIDYLATESYN-RXN
Evidence for , EC# EC-6.3.2.12DIHYDROFOLATESYNTH-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4752-MONOMER | Hydrolase | 0.14950857 | 3.0 | Q8W041 | 6.85656738641337e-37 | 1.0 | 0.49398634 | 530 | NIL | NIL |
Total # of reactions in pathway = 11
Present reactions: 7
Reaction | Protein(s) |
GLYOHMETRANS-RXN |
(# |
METHYLENETHFDEHYDROG-NADP-RXN |
(# |
METHENYLTHFCYCLOHYDRO-RXN |
(# |
FORMATETHFLIG-RXN |
(# |
1.5.1.20-RXN |
(# |
5-FORMYL-THF-CYCLO-LIGASE-RXN |
(# |
HOMOCYSMETB12-RXN |
(# |
Missing reactions: 4
DIHYDROFOLATEREDUCT-RXN |
GCVMULTI-RXN |
THYMIDYLATESYN-RXN |
RXN-6321 |
Evidence for , EC# EC-1.5.1.3DIHYDROFOLATEREDUCT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5165-MONOMER | Hypothetical protein | 1.4501007e-4 | 1.0 | P13955 | 0.917500922905107 | 1.0 | 0.2857143 | 161 | NIL | NIL |
GN3K-5037-MONOMER | Radical SAM (S-adenosylme | 1.4501007e-4 | 1.0 | Q9U8B8 | 0.549885792997151 | 1.0 | 0.28108108 | 185 | NIL | NIL |
GN3K-4305-MONOMER | ABC transporter, ATP-bind | 1.4501007e-4 | 1.0 | P43791 | 0.0729869211974513 | 1.0 | 0.2375 | 160 | NIL | NIL |
GN3K-4081-MONOMER | orf01259 | 1.4501007e-4 | 1.0 | Q5V600 | 0.237438219287171 | 1.0 | 0.2754491 | 167 | NIL | NIL |
Evidence for , EC# EC-2.1.1.45THYMIDYLATESYN-RXN
Total # of reactions in pathway = 12
Present reactions: 8
Reaction | Protein(s) |
FORMATETHFLIG-RXN |
(# |
METHENYLTHFCYCLOHYDRO-RXN |
(# |
GLYOHMETRANS-RXN |
(# |
METHYLENETHFDEHYDROG-NADP-RXN |
(# |
HOMOCYSMETB12-RXN |
(# |
1.5.1.20-RXN |
(# |
5-FORMYL-THF-CYCLO-LIGASE-RXN |
(# |
RXN-5061 | NIL |
Missing reactions: 4
FORMYLTHFDEFORMYL-RXN |
GCVMULTI-RXN |
2.1.1.19-RXN |
1.5.1.15-RXN |
Evidence for formyltetrahydrofolate deformylase, EC# EC-3.5.1.10FORMYLTHFDEFORMYL-RXN
Evidence for , EC# EC-2.1.1.192.1.1.19-RXN
Evidence for , EC# EC-1.5.1.151.5.1.15-RXN
fluoroacetate and fluorothreonine biosynthesis
Total # of reactions in pathway = 6
Present reactions: 1
Reaction | Protein(s) |
RXN-11743 |
(# |
Missing reactions: 5
RXN-11747 |
RXN-11744 |
RXN-11745 |
2.5.1.63-RXN |
RXN-11746 |
Evidence for , EC# EC-2.2.1.8RXN-11747
Evidence for 5-fluoro-5-deoxy-D-ribose-1-phosphate isomerase, EC# EC-5.3.1RXN-11744
Evidence for 5-fluoro-5-deoxy-d-ribulose-1-phosphate aldolaseRXN-11745
Evidence for , EC# EC-2.5.1.632.5.1.63-RXN
Evidence for , EC# EC-1.2.1.69RXN-11746
Entner-Doudoroff pathway III (semi-phosphorylative)
Total # of reactions in pathway = 9
Present reactions: 5
Reaction | Protein(s) |
DEOXYGLUCONOKIN-RXN |
(# |
3PGAREARR-RXN |
(# |
2PGADEHYDRAT-RXN |
(# |
PEPDEPHOS-RXN |
(# |
KDPGALDOL-RXN |
(# |
Missing reactions: 4
GLUCOSE-1-DEHYDROGENASE-RXN |
GLUCONOLACT-RXN |
GLUCONATE-DEHYDRATASE-RXN |
RXN-3443 |
Evidence for , EC# EC-1.1.1.47GLUCOSE-1-DEHYDROGENASE-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 0.0020121129 | 1.0 | P07999 | 0.0712628304946391 | 1.0 | 0.41984734 | 262 | NIL | NIL |
Evidence for , EC# EC-3.1.1.17GLUCONOLACT-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 9.6593995e-4 | 1.0 | Q01578 | 0.0108967960348194 | 1.0 | 0.38483146 | 356 | NIL | NIL |
Evidence for , EC# EC-4.2.1.39GLUCONATE-DEHYDRATASE-RXN
Evidence for , EC# EC-1.2.1.3RXN-3443
Total # of reactions in pathway = 2
Present reactions: 1
Reaction | Protein(s) |
KDPGALDOL-RXN |
(# |
Missing reactions: 1
PGLUCONDEHYDRAT-RXN |
Evidence for , EC# EC-4.2.1.12PGLUCONDEHYDRAT-RXN
Total # of reactions in pathway = 5
Present reactions: 3
Reaction | Protein(s) |
3.2.1.14-RXN |
(# |
RXN-12623 |
(# |
RXN-12624 |
(# |
Missing reactions: 2
RXN-12625 |
RXN-12626 |
Evidence for N,N'-diacetylchitobiose β-N-acetylglucosaminidase, EC# EC-3.2.1.52RXN-12625
Evidence for chitotriose β-N-acetylglucosaminidase, EC# EC-3.2.1.52RXN-12626
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
CARDIOLIPSYN-RXN |
(# |
PHOSPHAGLYPSYN-RXN |
(# |
Missing reactions: 1
PGPPHOSPHA-RXN |
Evidence for , EC# EC-3.1.3.27PGPPHOSPHA-RXN
biotin biosynthesis from 7-keto-8-aminopelargonate
Total # of reactions in pathway = 3
Present reactions: 1
Reaction | Protein(s) |
2.8.1.6-RXN |
(# |
Missing reactions: 2
DETHIOBIOTIN-SYN-RXN |
DAPASYN-RXN |
Evidence for , EC# EC-6.3.3.3DETHIOBIOTIN-SYN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4322-MONOMER | Formate acetyltransferase | 5.8898037e-5 | 3.0 | Q2IM14 | 0.29901985476215 | 1.0 | 0.1599402 | 223 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | O66832 | 0.429903379079802 | 1.0 | 0.13181818 | 220 | NIL | NIL |
Evidence for , EC# EC-2.6.1.62DAPASYN-RXN
autoinducer AI-2 biosynthesis II (Vibrio)
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN |
(# |
RIBOSYLHOMOCYSTEINASE-RXN |
(# |
Missing reactions: 1
RXN-7605 |
Evidence for , EC# EC-2.1.1RXN-7605
autoinducer AI-2 biosynthesis I
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN |
(# |
RIBOSYLHOMOCYSTEINASE-RXN |
(# |
Missing reactions: 1
RXN-7605 |
Evidence for , EC# EC-2.1.1RXN-7605
arginine degradation X (arginine monooxygenase pathway)
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
GUANIDINOBUTANAMIDE-NH3-RXN |
(# |
ARGININE-2-MONOOXYGENASE-RXN |
(# |
Missing reactions: 1
GUANIDINOBUTYRASE-RXN |
Evidence for , EC# EC-3.5.3.7GUANIDINOBUTYRASE-RXN
arginine biosynthesis II (acetyl cycle)
Total # of reactions in pathway = 9
Present reactions: 4
Reaction | Protein(s) |
N-ACETYLGLUTPREDUCT-RXN |
(# |
GLUTAMATE-N-ACETYLTRANSFERASE-RXN |
(# |
CARBPSYN-RXN |
(# |
N-ACETYLTRANSFER-RXN |
(# |
Missing reactions: 5
ARGSUCCINSYN-RXN |
ARGSUCCINLYA-RXN |
ORNCARBAMTRANSFER-RXN |
ACETYLORNTRANSAM-RXN |
ACETYLGLUTKIN-RXN |
Evidence for , EC# EC-6.3.4.5ARGSUCCINSYN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4029-MONOMER | Chromosome partition prot | 6.258456e-5 | 1.0 | Q489P3 | 0.198105109501754 | 1.0 | 0.059808612 | 418 | NIL | NIL |
GN3K-4322-MONOMER | Formate acetyltransferase | 5.8898037e-5 | 2.0 | Q7PR38 | 0.291102282412449 | 1.0 | 0.108772784 | 424 | NIL | NIL |
Evidence for , EC# EC-4.3.2.1ARGSUCCINLYA-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4981-MONOMER | (Exo)Nuclease SbcCD, subu | 6.258456e-5 | 2.0 | Q7VFF8 | 0.215551823960037 | 1.0 | 0.06302966 | 472 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 2.0 | Q9RWJ0 | 0.331787836002265 | 1.0 | 0.17276798 | 471 | NIL | NIL |
Evidence for , EC# EC-2.1.3.3ORNCARBAMTRANSFER-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3554-MONOMER | orf00764 | 5.8898037e-5 | 1.0 | Q8TWG4 | 0.588142900115949 | 1.0 | 0.17628205 | 312 | NIL | NIL |
Evidence for , EC# EC-2.6.1.11ACETYLORNTRANSAM-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5129-MONOMER | Vitamin B12 dependent met | 0.0020121129 | 1.0 | P24087 | 0.118715014801167 | 1.0 | 0.4187192 | 406 | NIL | NIL |
Evidence for , EC# EC-2.7.2.8ACETYLGLUTKIN-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-5135-MONOMER | Carbamoyl-phosphate synth | 0.02452547 | 1.0 | A0AJ38 | 0.71909406134565 | 1.0 | 0.308 | 250 | T | NIL |
GN3K-4877-MONOMER | Protein of unknown functi | 0.0020121129 | 7.0 | Q2RP10 | 0.00309082140683105 | 1.0 | 0.47649485 | 310 | NIL | NIL |
GN3K-3554-MONOMER | orf00764 | 9.6593995e-4 | 1.0 | Q4A0M9 | 0.650974954247449 | 1.0 | 0.3952569 | 253 | NIL | NIL |
GN3K-5169-MONOMER | tRNA-Gln | 2.4864994e-4 | 1.0 | Q1D264 | 0.397068755388458 | 1.0 | 0.064935066 | 308 | T | NIL |
GN3K-4081-MONOMER | orf01259 | 1.4501007e-4 | 2.0 | Q5WEW9 | 0.203367772580766 | 1.0 | 0.28958946 | 257 | NIL | NIL |
GN3K-5386-MONOMER | DNA integrity scanning pr | 1.6216387e-5 | 6.0 | Q1J2A2 | 0.0444201191720533 | 1.1666666 | 0.13953358 | 249 | NIL | NIL |
Total # of reactions in pathway = 3
Present reactions: 1
Reaction | Protein(s) |
ALARACECAT-RXN |
(# |
Missing reactions: 2
BRANCHED-CHAINAMINOTRANSFERVAL-RXN |
VALINE-PYRUVATE-AMINOTRANSFER-RXN |
Evidence for Valine transaminase, EC# EC-2.6.1.42BRANCHED-CHAINAMINOTRANSFERVAL-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-4081-MONOMER | orf01259 | 0.5867721 | 2.0 | tr|A6UWA0|A6UWA0_META3 | 1.03125053024547e-13 | 1.0 | 0.7806656 | 286 | NIL | NIL |
Evidence for , EC# EC-2.6.1.66VALINE-PYRUVATE-AMINOTRANSFER-RXN
adenosylcobalamin salvage from cobinamide I
Total # of reactions in pathway = 6
Present reactions: 4
Reaction | Protein(s) |
COBINAMIDEKIN-RXN |
(# |
DMBPPRIBOSYLTRANS-RXN |
(# |
BTUR2-RXN |
(# |
COBALAMIN5PSYN-RXN |
(# |
Missing reactions: 2
COBINPGUANYLYLTRANS-RXN |
RXN-8770 |
Evidence for , EC# EC-2.7.7.62COBINPGUANYLYLTRANS-RXN
Evidence for , EC# EC-3.1.3.73RXN-8770
adenosylcobalamin biosynthesis I (early cobalt insertion)
Total # of reactions in pathway = 14
Present reactions: 5
Reaction | Protein(s) |
RXN-8769 |
(# |
RXN-8675 |
(# |
UROPORIIIMETHYLTRANSA-RXN |
(# |
RXN-8759 |
(# |
PWY-5509 | NIL |
Missing reactions: 9
RXN-8763 |
RXN-8765 |
RXN-8768 |
RXN-8760 |
RXN-8761 |
RXN-8762 |
RXN-8764 |
RXN-8766 |
RXN-8767 |
Evidence for , EC# EC-3.7.1.12RXN-8763
Evidence for Cobalt-precorrin-2 C(20)-methyltransferase, EC# EC-2.1.1.151RXN-8760
Evidence for cobalt-precorrin-3 (C17)-methyltransferase, EC# EC-2.1.1.131RXN-8761
Evidence for cobalt precorrin-4 (C11)-methyltransferase, EC# EC-2.1.1.133RXN-8762
Evidence for , EC# EC-2.1.1.195RXN-8764
Evidence for cobalt-precorrin-6B methylase, EC# EC-2.1.1RXN-8766
Evidence for , EC# EC-2.1.1.196RXN-8767
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I
Total # of reactions in pathway = 8
Present reactions: 4
Reaction | Protein(s) |
R344-RXN |
(# |
R345-RXN |
(# |
COBALAMIN5PSYN-RXN |
(# |
DMBPPRIBOSYLTRANS-RXN |
(# |
Missing reactions: 4
R343-RXN |
COBINPGUANYLYLTRANS-RXN |
RXN-6261 |
RXN-8770 |
Evidence for , EC# EC-1.16.8.1R343-RXN
Hit | Common | P | #Q | Best Qry | Best Eval | Avg Rank | Aln Len | Qry Len | IDOP? | adj? |
GN3K-3587-MONOMER | Aluminum resistance prote | 0.016743753 | 1.0 | Q8ZQX1 | 0.00138447292635106 | 1.0 | 0.6306818 | 176 | NIL | NIL |
GN3K-3399-MONOMER | orf00617 | 1.4501007e-4 | 1.0 | D5AV14 | 0.783721048112424 | 1.0 | 0.25120774 | 207 | NIL | NIL |
Evidence for , EC# EC-2.7.7.62COBINPGUANYLYLTRANS-RXN
Evidence for , EC# EC-6.3.1.10RXN-6261
Evidence for , EC# EC-3.1.3.73RXN-8770
adenosine nucleotides degradation I
Total # of reactions in pathway = 8
Present reactions: 4
Reaction | Protein(s) |
IMP-DEHYDROG-RXN |
(# |
XMPXAN-RXN |
(# |
RXN-7607 |
(# |
INOSINE-NUCLEOSIDASE-RXN |
(# |
Missing reactions: 4
AMP-DEAMINASE-RXN |
RXN0-363 |
RXN0-901 |
RXN-7682 |
Evidence for , EC# EC-3.5.4.6AMP-DEAMINASE-RXN
Evidence for , EC# EC-3.2.2.1RXN0-363
Evidence for , EC# EC-1.17.1.4RXN0-901
Evidence for , EC# EC-1.17.1.4RXN-7682
adenosine nucleotides de novo biosynthesis
Total # of reactions in pathway = 8
Present reactions: 7
Reaction | Protein(s) |
ADENYLOSUCCINATE-SYNTHASE-RXN |
(# |
AMPSYN-RXN |
(# |
ADENYL-KIN-RXN |
(# |
ADPREDUCT-RXN |
(# |
RXN0-745 | NIL |
RXN0-747 | NIL |
ATPSYN-RXN |
(# |
Missing reactions: 1
DADPKIN-RXN |
Evidence for , EC# EC-2.7.4.6DADPKIN-RXN
adenine and adenosine salvage I
Total # of reactions in pathway = 2
Present reactions: 1
Reaction | Protein(s) |
ADENPRIBOSYLTRAN-RXN |
(# |
Missing reactions: 1
ADENPHOSPHOR-RXN |
Evidence for adenosine phosphorylase, EC# EC-2.4.2.1ADENPHOSPHOR-RXN
S-adenosyl-L-methionine cycle I
Total # of reactions in pathway = 5
Present reactions: 3
Reaction | Protein(s) |
ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN |
(# |
RIBOSYLHOMOCYSTEINASE-RXN |
(# |
SAM-PWY | NIL |
Missing reactions: 2
RXN-7605 |
HOMOCYSMET-RXN |
Evidence for , EC# EC-2.1.1RXN-7605
Evidence for , EC# EC-2.1.1.14HOMOCYSMET-RXN
N-acetylneuraminate and N-acetylmannosamine degradation
Total # of reactions in pathway = 3
Present reactions: 2
Reaction | Protein(s) |
NANE-RXN |
(# |
ACNEULY-RXN |
(# |
Missing reactions: 1
NANK-RXN |
Evidence for , EC# EC-2.7.1.60NANK-RXN
N-acetylglucosamine degradation II
Total # of reactions in pathway = 4
Present reactions: 3
Reaction | Protein(s) |
GLUCOSAMINE-6-P-DEAMIN-RXN |
(# |
NAG6PDEACET-RXN |
(# |
GLUAMCAT-PWY | NIL |
Missing reactions: 1
N-ACETYLGLUCOSAMINE-KINASE-RXN |
Evidence for , EC# EC-2.7.1.59N-ACETYLGLUCOSAMINE-KINASE-RXN
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
Total # of reactions in pathway = 5
Present reactions: 3
Reaction | Protein(s) |
H2PTERIDINEPYROPHOSPHOKIN-RXN |
(# |
H2NEOPTERINALDOL-RXN |
(# |
GTP-CYCLOHYDRO-I-RXN |
(# |
Missing reactions: 2
DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN |
H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN |
Evidence for , EC# EC-3.6.1DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN
Evidence for , EC# EC-3.6.1H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN
5-aminoimidazole ribonucleotide biosynthesis II
Total # of reactions in pathway = 5
Present reactions: 4
Reaction | Protein(s) |
PRPPAMIDOTRANS-RXN |
(# |
GLYRIBONUCSYN-RXN |
(# |
FGAMSYN-RXN |
(# |
AIRS-RXN |
(# |
Missing reactions: 1
GARTRANSFORMYL2-RXN |
Evidence for , EC# EC-2.1.2GARTRANSFORMYL2-RXN
β-D-glucuronide and D-glucuronate degradation
Total # of reactions in pathway = 5
Present reactions: 4
Reaction | Protein(s) |
MANNONDEHYDRAT-RXN |
(# |
DEOXYGLUCONOKIN-RXN |
(# |
MANNONOXIDOREDUCT-RXN |
(# |
GLUCUROISOM-RXN |
(# |
Missing reactions: 1
BETA-GLUCURONID-RXN |
Evidence for , EC# EC-3.2.1.31BETA-GLUCURONID-RXN