Identification of enzymes to fill pathway holes in CRIB

Nodes used in Bayesian network: SAME-GENE DIRECTON ADJACENT SSCORE EVALS ALN RANK

Summary Statistics:

Number of pathways analyzed: 102

Number of pathway holes: 218

One or more candidates have been identified for 66 holes.

List of Pathways

xyloglucan degradation II (exoglucanase)

Total # of reactions in pathway = 6

Present reactions: 3

Reaction Protein(s)
RXN-12398 (# # #)
RXN-12399 (# # #)
RXN-12400 (# # #)

Missing reactions: 3

3.2.1.120-RXN
RXN-12397
RXN-12402

Evidence for , EC# EC-3.2.1.1203.2.1.120-RXN

no BLAST hits found

Evidence for , EC# EC-3.2.1.155RXN-12397

no BLAST hits found

Evidence for isoprimeverose α-xylosidase, EC# EC-3.2.1.177RXN-12402

no BLAST hits found

xanthine and xanthosine salvage

Total # of reactions in pathway = 2

Present reactions: 1

Reaction Protein(s)
XANTHOSINEPHOSPHORY-RXN (#)

Missing reactions: 1

XANPRIBOSYLTRAN-RXN

Evidence for , EC# EC-2.4.2.22XANPRIBOSYLTRAN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 0.016743753 1.0 Q5WI27 0.819710160653955 1.0 0.6318408 201 NIL NIL
GN3K-3826-MONOMER Ribose ABC transporter, A 0.0020121129 1.0 P0A9M5 0.249449309721322 1.0 0.40789473 152 NIL NIL
GN3K-3399-MONOMER orf00617 1.4501007e-4 1.0 Q1J141 0.321846664463365 1.0 0.22277227 202 NIL NIL

valine degradation II

Total # of reactions in pathway = 3

Present reactions: 1

Reaction Protein(s)
RXN-7657 (#)

Missing reactions: 2

BRANCHED-CHAINAMINOTRANSFERVAL-RXN
RXN-7643

Evidence for Valine transaminase, EC# EC-2.6.1.42BRANCHED-CHAINAMINOTRANSFERVAL-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 0.5867721 2.0 tr|A6UWA0|A6UWA0_META3 1.03125053024547e-13 1.0 0.7806656 286 NIL NIL

Evidence for , EC# EC-4.1.1.72RXN-7643

no BLAST hits found

urate biosynthesis/inosine 5'-phosphate degradation

Total # of reactions in pathway = 4

Present reactions: 3

Reaction Protein(s)
IMP-DEHYDROG-RXN (#)
XMPXAN-RXN (#)
XANTHOSINEPHOSPHORY-RXN (#)

Missing reactions: 1

RXN0-901

Evidence for , EC# EC-1.17.1.4RXN0-901

no BLAST hits found

UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)

Total # of reactions in pathway = 8

Present reactions: 7

Reaction Protein(s)
UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN (#)
UDPNACETYLMURAMATEDEHYDROG-RXN (#)
UDP-NACMUR-ALA-LIG-RXN (#)
UDP-NACMURALA-GLU-LIG-RXN (#)
GLUTRACE-RXN (#)
DALADALALIG-RXN (#)
6.3.2.10-RXN (#)

Missing reactions: 1

6.3.2.7-RXN

Evidence for , EC# EC-6.3.2.76.3.2.7-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4752-MONOMER Hydrolase 0.0020121129 2.0 Q8DYT2 0.00140354940927754 1.0 0.4657362 484 NIL NIL

tyrosine degradation III

Total # of reactions in pathway = 4

Present reactions: 1

Reaction Protein(s)
RXN3O-4113 (#)

Missing reactions: 3

TYRAMINOTRANS-RXN
4.1.1.80-RXN
RXN3O-4157

Evidence for Tyrosine transaminase, EC# EC-2.6.1.57TYRAMINOTRANS-RXN

no BLAST hits found

Evidence for , EC# EC-4.1.1.804.1.1.80-RXN

no BLAST hits found

Evidence for , EC# EC-2.6.1.58RXN3O-4157

no BLAST hits found

tryptophan degradation IV (via indole-3-lactate)

Total # of reactions in pathway = 2

Present reactions: 1

Reaction Protein(s)
TRYPTOPHAN-AMINOTRANSFERASE-RXN (#)

Missing reactions: 1

INDOLELACTATE-DEHYDROGENASE-RXN

Evidence for , EC# EC-1.1.1.110INDOLELACTATE-DEHYDROGENASE-RXN

no BLAST hits found

tRNA processing pathway I

Total # of reactions in pathway = 10

Present reactions: 5

Reaction Protein(s)
RXN0-6478 (# #)
RXN0-6479 (# #)
RXN0-6480 (# # #)
3.1.26.5-RXN (# # #)
RXN0-6485 (# #)

Missing reactions: 5

RXN0-4222
RXN0-6482
RXN0-6484
RXN0-6483
RXN0-6481

Evidence for , EC# EC-3.1.13.1RXN0-4222

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5306-MONOMER Hypothetical protein 5.8898037e-5 2.0 P75529 0.229126513780165 1.0 0.12182419 726 NIL NIL

Evidence for , EC# EC-2.7.7.56RXN0-6482

no BLAST hits found

Evidence for , EC# EC-3.1.13.5RXN0-6484

no BLAST hits found

Evidence for , EC# EC-3.1.13.5RXN0-6483

no BLAST hits found

Evidence for , EC# EC-2.7.7.56RXN0-6481

no BLAST hits found

threonine degradation I

Total # of reactions in pathway = 4

Present reactions: 2

Reaction Protein(s)
THREDEHYD-RXN (# #)
PTAALT-RXN (#)

Missing reactions: 2

KETOBUTFORMLY-RXN
PROPKIN-RXN

Evidence for 2-ketobutyrate formate-lyase, EC# EC-2.3.1KETOBUTFORMLY-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4531-MONOMER Primase 0.56284624 2.0 P09373 1.745165762865e-121 1.0 0.384524 760 NIL NIL

Evidence for , EC# EC-2.7.2.15PROPKIN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4295-MONOMER Hypothetical protein 0.9896033 4.0 A1JTT9 1.6581014471819e-92 1.0 0.80992174 412 NIL NIL

threonine biosynthesis from homoserine

Total # of reactions in pathway = 2

Present reactions: 1

Reaction Protein(s)
HOMOSERKIN-RXN (#)

Missing reactions: 1

THRESYN-RXN

Evidence for , EC# EC-4.2.3.1THRESYN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 0.5867721 3.0 Q58860 1.45206963836301e-15 1.0 0.7694084 405 NIL NIL

thiazole biosynthesis II (Bacillus)

Total # of reactions in pathway = 7

Present reactions: 5

Reaction Protein(s)
THIAZOLSYN2-RXN NIL
DXS-RXN (# #)
RXN-9789 NIL
RXN-12621 NIL
RXN0-308 (# # # # #)

Missing reactions: 2

RXN-12609
RXN-12614

Evidence for , EC# EC-5.3.99.10RXN-12609

no BLAST hits found

Evidence for glycine oxidaseRXN-12614

no BLAST hits found

thiazole biosynthesis I (E. coli)

Total # of reactions in pathway = 6

Present reactions: 5

Reaction Protein(s)
THIAZOLSYN2-RXN NIL
DXS-RXN (# #)
RXN-9787 (# # # # #)
RXN-9788 NIL
RXN-9789 NIL

Missing reactions: 1

RXN-11319

Evidence for , EC# EC-4.1.99.19RXN-11319

no BLAST hits found

thiamin diphosphate biosynthesis IV (eukaryotes)

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
RXNQT-4191 (#)
THIAMIN-PYROPHOSPHOKINASE-RXN (# #)

Missing reactions: 1

THI-P-SYN-RXN

Evidence for , EC# EC-2.5.1.3THI-P-SYN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4067-MONOMER Geranyltranstransferase 0.007948102 1.0 Q0VSP5 0.0705834555209356 1.0 0.48387095 217 T NIL
GN3K-3554-MONOMER orf00764 0.0020121129 2.0 A4FX32 0.131432137143233 1.0 0.4219117 207 NIL NIL
GN3K-4081-MONOMER orf01259 0.0020121129 1.0 Q8R806 0.59456008502637 1.0 0.45794392 214 NIL NIL
GN3K-5360-MONOMER DNA-directed RNA polymera 5.8898037e-5 1.0 A8M9N4 0.675307560456064 1.0 0.17073171 205 NIL NIL

thiamin diphosphate biosynthesis III (Staphylococcus)

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
RXNQT-4191 (#)
THIAMIN-PYROPHOSPHOKINASE-RXN (# #)

Missing reactions: 1

RXN-12610

Evidence for thiamine-phosphate diphosphorylase, EC# EC-2.5.1.3RXN-12610

no BLAST hits found

tetrahydrofolate biosynthesis

Total # of reactions in pathway = 3

Present reactions: 1

Reaction Protein(s)
H2PTEROATESYNTH-RXN (#)

Missing reactions: 2

DIHYDROFOLATESYNTH-RXN
DIHYDROFOLATEREDUCT-RXN

Evidence for , EC# EC-6.3.2.12DIHYDROFOLATESYNTH-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4752-MONOMER Hydrolase 0.14950857 3.0 Q8W041 6.85656738641337e-37 1.0 0.49398634 530 NIL NIL

Evidence for , EC# EC-1.5.1.3DIHYDROFOLATEREDUCT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5037-MONOMER Radical SAM (S-adenosylme 1.4501007e-4 1.0 Q9U8B8 0.549885792997151 1.0 0.28108108 185 NIL NIL
GN3K-4305-MONOMER ABC transporter, ATP-bind 1.4501007e-4 1.0 P43791 0.0729869211974513 1.0 0.2375 160 NIL NIL
GN3K-5165-MONOMER Hypothetical protein 1.4501007e-4 1.0 P13955 0.917500922905107 1.0 0.2857143 161 NIL NIL
GN3K-4081-MONOMER orf01259 1.4501007e-4 1.0 Q5V600 0.237438219287171 1.0 0.2754491 167 NIL NIL

superpathway of heme biosynthesis from uroporphyrinogen-III

Total # of reactions in pathway = 5

Present reactions: 3

Reaction Protein(s)
PROTOHEMEFERROCHELAT-RXN (#)
RXN0-1461 (#)
HEMESYN2-PWY NIL

Missing reactions: 2

UROGENDECARBOX-RXN
PROTOPORGENOXI-RXN

Evidence for , EC# EC-4.1.1.37UROGENDECARBOX-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5422-MONOMER Uroporphyrinogen-III meth 1.4501007e-4 1.0 Q11X05 0.0361039359937739 1.0 0.22674419 344 NIL NIL
GN3K-4012-MONOMER Capsule biosynthesis prot 1.4501007e-4 1.0 Q5GTT1 0.806961061597943 1.0 0.29971182 347 NIL NIL
GN3K-3172-MONOMER CDP-diacylglycerol--glyce 6.258456e-5 1.0 P29680 0.41117452696262 1.0 0.059322033 354 NIL NIL

Evidence for , EC# EC-1.3.3.4PROTOPORGENOXI-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3587-MONOMER Aluminum resistance prote 1.4501007e-4 1.0 P0ACB4 0.031056071722715 1.0 0.28176796 181 NIL NIL

superpathway of 5-aminoimidazole ribonucleotide biosynthesis

Total # of reactions in pathway = 7

Present reactions: 6

Reaction Protein(s)
PRPPAMIDOTRANS-RXN (#)
GLYRIBONUCSYN-RXN (#)
FGAMSYN-RXN (#)
AIRS-RXN (#)
PWY-6121 NIL
PWY-6122 NIL

Missing reactions: 1

GARTRANSFORMYL2-RXN

Evidence for , EC# EC-2.1.2GARTRANSFORMYL2-RXN

no BLAST hits found

superoxide radicals degradation

Total # of reactions in pathway = 2

Present reactions: 1

Reaction Protein(s)
SUPEROX-DISMUT-RXN (# #)

Missing reactions: 1

CATAL-RXN

Evidence for , EC# EC-1.11.1.6CATAL-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 1.4501007e-4 2.0 P60355 0.155598441257335 1.0 0.26416382 266 NIL NIL
GN3K-5129-MONOMER Vitamin B12 dependent met 5.8898037e-5 1.0 P50979 0.0673106776273088 1.0 0.101983 706 NIL NIL

sucrose degradation IV

Total # of reactions in pathway = 4

Present reactions: 1

Reaction Protein(s)
SUCROSE-PHOSPHORYLASE-RXN (#)

Missing reactions: 3

FRUCTOKINASE-RXN
PHOSPHOGLUCMUT-RXN
PGLUCISOM-RXN

Evidence for fructokinase, EC# EC-2.7.1.4FRUCTOKINASE-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 1.4501007e-4 1.0 Q9ZHJ6 0.21075339287014 1.0 0.23076923 312 NIL NIL

Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5423-MONOMER Porphobilinogen deaminase 6.258456e-5 1.0 Q03262 0.721210927867915 1.0 0.096463025 622 NIL NIL
GN3K-4295-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q49WH7 0.382450792993071 1.0 0.17391305 552 NIL NIL

Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN

no BLAST hits found

sucrose degradation III

Total # of reactions in pathway = 7

Present reactions: 2

Reaction Protein(s)
RXN-1461 (# #)
GLUC1PURIDYLTRANS-RXN (# #)

Missing reactions: 5

FRUCTOKINASE-RXN
PGLUCISOM-RXN
PHOSPHOGLUCMUT-RXN
SUCROSE-SYNTHASE-RXN
RXN-1685

Evidence for fructokinase, EC# EC-2.7.1.4FRUCTOKINASE-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 1.4501007e-4 1.0 Q9ZHJ6 0.21075339287014 1.0 0.23076923 312 NIL NIL

Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN

no BLAST hits found

Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5423-MONOMER Porphobilinogen deaminase 6.258456e-5 1.0 Q03262 0.721210927867915 1.0 0.096463025 622 NIL NIL
GN3K-4295-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q49WH7 0.382450792993071 1.0 0.17391305 552 NIL NIL

Evidence for Sucrose synthase, EC# EC-2.4.1.13SUCROSE-SYNTHASE-RXN

no BLAST hits found

Evidence for , EC# EC-2.7.1.1RXN-1685

no BLAST hits found

sucrose degradation I

Total # of reactions in pathway = 2

Present reactions: 1

Reaction Protein(s)
3.2.1.26-RXN (# #)

Missing reactions: 1

FRUCTOKINASE-RXN

Evidence for fructokinase, EC# EC-2.7.1.4FRUCTOKINASE-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 1.4501007e-4 1.0 Q9ZHJ6 0.21075339287014 1.0 0.23076923 312 NIL NIL

sucrose biosynthesis

Total # of reactions in pathway = 9

Present reactions: 5

Reaction Protein(s)
GLUC1PURIDYLTRANS-RXN (# #)
PHOSGLYPHOS-RXN (#)
GAPOXNPHOSPHN-RXN (#)
F16ALDOLASE-RXN (#)
F16BDEPHOS-RXN (# #)

Missing reactions: 4

PHOSPHOGLUCMUT-RXN
SUCROSE-PHOSPHATE-SYNTHASE-RXN
SUCROSE-PHOSPHATASE-RXN
PGLUCISOM-RXN

Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5423-MONOMER Porphobilinogen deaminase 6.258456e-5 1.0 Q03262 0.721210927867915 1.0 0.096463025 622 NIL NIL
GN3K-4295-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q49WH7 0.382450792993071 1.0 0.17391305 552 NIL NIL

Evidence for , EC# EC-2.4.1.14SUCROSE-PHOSPHATE-SYNTHASE-RXN

no BLAST hits found

Evidence for , EC# EC-3.1.3.24SUCROSE-PHOSPHATASE-RXN

no BLAST hits found

Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN

no BLAST hits found

starch degradation III

Total # of reactions in pathway = 4

Present reactions: 2

Reaction Protein(s)
CYCLOMALTODEXTRINASE-RXN (#)
RXN-12171 (# #)

Missing reactions: 2

PHOSPHOGLUCMUT-RXN
RXN-12181

Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5423-MONOMER Porphobilinogen deaminase 6.258456e-5 1.0 Q03262 0.721210927867915 1.0 0.096463025 622 NIL NIL
GN3K-4295-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q49WH7 0.382450792993071 1.0 0.17391305 552 NIL NIL

Evidence for cyclodextrin glucanotransferase, EC# EC-2.4.1.19RXN-12181

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 0.089777395 1.0 Q9UWN2 3.81516479532657e-19 1.0 0.56562924 739 NIL NIL
GN3K-5261-MONOMER Transcriptional regulator 0.008697911 1.0 Q9UWN2 1.39254018770922e-13 2.0 0.34776726 739 NIL NIL

starch biosynthesis

Total # of reactions in pathway = 5

Present reactions: 3

Reaction Protein(s)
GLUC1PADENYLTRANS-RXN (#)
GLYCOGENSYN-RXN (#)
RXN-7710 (#)

Missing reactions: 2

PGLUCISOM-RXN
PHOSPHOGLUCMUT-RXN

Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN

no BLAST hits found

Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5423-MONOMER Porphobilinogen deaminase 6.258456e-5 1.0 Q03262 0.721210927867915 1.0 0.096463025 622 NIL NIL
GN3K-4295-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q49WH7 0.382450792993071 1.0 0.17391305 552 NIL NIL

stachyose degradation

Total # of reactions in pathway = 8

Present reactions: 5

Reaction Protein(s)
UDPGLUCEPIM-RXN (# #)
RXN-11501 (# # #)
GALACTURIDYLYLTRANS-RXN (# #)
GLUC1PURIDYLTRANS-RXN (# #)
GALACTOKIN-RXN (#)

Missing reactions: 3

UTPHEXPURIDYLYLTRANS-RXN
RXN-11502
RXN-11505

Evidence for , EC# EC-2.7.7.10UTPHEXPURIDYLYLTRANS-RXN

no BLAST hits found

Evidence for , EC# EC-3.2.1RXN-11502

no BLAST hits found

Evidence for RXN-11505

no BLAST hits found

serine biosynthesis

Total # of reactions in pathway = 3

Present reactions: 1

Reaction Protein(s)
RXN0-5114 (#)

Missing reactions: 2

PSERTRANSAM-RXN
PGLYCDEHYDROG-RXN

Evidence for , EC# EC-2.6.1.52PSERTRANSAM-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5386-MONOMER DNA integrity scanning pr 1.4501007e-4 1.0 Q1D2L9 0.120072899125704 1.0 0.21823205 362 NIL NIL

Evidence for , EC# EC-1.1.1.95PGLYCDEHYDROG-RXN

no BLAST hits found

salvage pathways of pyrimidine deoxyribonucleotides

Total # of reactions in pathway = 5

Present reactions: 3

Reaction Protein(s)
DURIDKI-RXN (#)
THYM-PHOSPH-RXN (#)
THYKI-RXN (#)

Missing reactions: 2

CYTIDEAM-RXN
URA-PHOSPH-RXN

Evidence for , EC# EC-3.5.4.14CYTIDEAM-RXN

no BLAST hits found

Evidence for URA-PHOSPH-RXN

no BLAST hits found

respiration (anaerobic)

Total # of reactions in pathway = 13

Present reactions: 4

Reaction Protein(s)
PEPDEPHOS-RXN (#)
PYRUVDEH-RXN (#)
PYRUVFORMLY-RXN (#)
2PGADEHYDRAT-RXN (#)

Missing reactions: 9

CITSYN-RXN
ACONITATEDEHYDR-RXN
ACONITATEHYDR-RXN
PEPCARBOX-RXN
FUMHYDR-RXN
FHLMULTI-RXN
R601-RXN
ISOCITDEH-RXN
MALATE-DEH-RXN

Evidence for , EC# EC-2.3.3.1CITSYN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5165-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q5UZI9 0.0714995046188795 1.0 0.11811024 381 NIL NIL
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 O34002 0.35247478461291 1.0 0.14511873 379 NIL NIL
GN3K-4081-MONOMER orf01259 5.8898037e-5 1.0 P24118 0.136076226683792 1.0 0.16233766 462 NIL NIL

Evidence for , EC# EC-4.2.1.3ACONITATEDEHYDR-RXN

no BLAST hits found

Evidence for , EC# EC-4.2.1.3ACONITATEHYDR-RXN

no BLAST hits found

Evidence for , EC# EC-4.1.1.31PEPCARBOX-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3399-MONOMER orf00617 6.258456e-5 1.0 A4VN44 0.0625675267997296 1.0 0.07736064 879 NIL NIL

Evidence for , EC# EC-4.2.1.2FUMHYDR-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5165-MONOMER Hypothetical protein 1.4501007e-4 1.0 O66271 0.380573426357479 1.0 0.2274678 466 NIL NIL

Evidence for FHLMULTI-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3942-MONOMER orf01131 9.6593995e-4 1.0 P16432 0.00229655308914807 1.0 0.3611111 180 NIL NIL
GN3K-3594-MONOMER Hypothetical protein 3.9928098e-5 1.0 P16432 0.0164534361835148 2.0 0.28333333 180 NIL NIL
GN3K-3554-MONOMER orf00764 1.4988173e-5 1.0 P16432 0.0264730727019621 3.0 0.2888889 180 NIL NIL

Evidence for , EC# EC-1.3.5.4R601-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5271-MONOMER Transposase 1.4501007e-4 1.0 P0AC47 0.0184111090134787 1.0 0.29098362 244 NIL NIL
GN3K-3554-MONOMER orf00764 1.6216387e-5 1.0 P0AC47 0.0869116193842571 2.0 0.18852459 244 NIL NIL

Evidence for , EC# EC-1.1.1.42ISOCITDEH-RXN

no BLAST hits found

Evidence for , EC# EC-1.1.1.37MALATE-DEH-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 9.6593995e-4 1.0 A7HT37 0.93398296100543 1.0 0.34234235 333 NIL NIL
GN3K-4029-MONOMER Chromosome partition prot 9.6593995e-4 1.0 Q54GE6 0.224148095668757 1.0 0.3657289 391 NIL NIL
GN3K-4295-MONOMER Hypothetical protein 1.4501007e-4 1.0 P83778 0.133543237525046 1.0 0.27893174 337 NIL NIL
GN3K-5164-MONOMER Lysyl-tRNA synthetase 3.9928098e-5 1.0 P83778 0.164517846222479 2.0 0.27893174 337 NIL NIL

queuosine biosynthesis

Total # of reactions in pathway = 4

Present reactions: 1

Reaction Protein(s)
RXN0-1342 (#)

Missing reactions: 3

RXN0-4022
RXN0-1321
RXN-12104

Evidence for , EC# EC-1.7.1.13RXN0-4022

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 1.4501007e-4 1.0 B3EMR0 0.148303616548215 1.0 0.2457627 118 NIL NIL
GN3K-4752-MONOMER Hydrolase 1.4501007e-4 1.0 Q5MZT0 0.708486738973599 1.0 0.24712643 174 NIL NIL

Evidence for , EC# EC-2.4.2.29RXN0-1321

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3589-MONOMER ABC transporter, ATP-bind 6.258456e-5 1.0 B4N549 0.871332919972895 1.0 0.06775701 428 NIL NIL

Evidence for RXN-12104

no BLAST hits found

pyruvate fermentation to butanoate

Total # of reactions in pathway = 7

Present reactions: 4

Reaction Protein(s)
PHOSPHATE-BUTYRYLTRANSFERASE-RXN (#)
BUTYRATE-KINASE-RXN (#)
PYRUFLAVREDUCT-RXN NIL
BUTYRYL-COA-DEHYDROGENASE-RXN NIL

Missing reactions: 3

ACETYL-COA-ACETYLTRANSFER-RXN
RXN-11662
RXN-11667

Evidence for , EC# EC-2.3.1.9ACETYL-COA-ACETYLTRANSFER-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5321-MONOMER Cobalt ABC transporter, A 5.8898037e-5 1.0 Q86AD9 0.450861676947931 1.0 0.1884058 414 NIL NIL
GN3K-4311-MONOMER Penicillin-binding protei 5.8898037e-5 1.0 Q6L8K7 0.779915203250884 1.0 0.16372795 397 NIL NIL

Evidence for , EC# EC-1.1.1.35RXN-11662

no BLAST hits found

Evidence for (S)-3-hydroxybutanoyl-CoA dehydrogenase, EC# EC-4.2.1RXN-11667

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 2.0831992e-4 1.0 A5N5C7 0.938940233514613 3.0 0.47490346 259 NIL NIL
GN3K-5161-MONOMER tRNA-dihydrouridine synth 1.4501007e-4 1.0 A5N5C7 0.718921252517547 1.0 0.23552124 259 NIL NIL
GN3K-5165-MONOMER Hypothetical protein 3.9928098e-5 1.0 A5N5C7 0.731018910011046 2.0 0.23552124 259 NIL NIL

pyrimidine ribonucleotides interconversion

Total # of reactions in pathway = 11

Present reactions: 4

Reaction Protein(s)
2.7.4.22-RXN (#)
RXN-12196 (# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #)
RXN-12195 (# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #)
CMPKI-RXN (#)

Missing reactions: 7

UDPKIN-RXN
CTPSYN-RXN
CDPKIN-RXN
RXN-12200
RXN-12199
RXN-12198
RXN-12197

Evidence for , EC# EC-2.7.4.6UDPKIN-RXN

no BLAST hits found

Evidence for , EC# EC-6.3.4.2CTPSYN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3399-MONOMER orf00617 1.4501007e-4 1.0 Q0SMT3 0.437152770814311 1.0 0.2251407 533 NIL NIL
GN3K-3197-MONOMER Acetyl-CoA carboxylase, b 6.258456e-5 1.0 Q2GCQ2 0.487022486553904 1.0 0.047445256 548 NIL NIL
GN3K-4752-MONOMER Hydrolase 6.258456e-5 1.0 Q7MAI3 0.803674028052541 1.0 0.083333336 552 NIL NIL

Evidence for , EC# EC-2.7.4.6CDPKIN-RXN

no BLAST hits found

Evidence for , EC# EC-3.6.1.5RXN-12200

no BLAST hits found

Evidence for , EC# EC-3.6.1.5RXN-12199

no BLAST hits found

Evidence for , EC# EC-3.6.1.6RXN-12198

Evidence for , EC# EC-3.6.1.6RXN-12197

pyrimidine ribonucleosides degradation II

Total # of reactions in pathway = 2

Present reactions: 1

Reaction Protein(s)
CYTIDEAM2-RXN (# #)

Missing reactions: 1

URIDINE-NUCLEOSIDASE-RXN

Evidence for , EC# EC-3.2.2.3URIDINE-NUCLEOSIDASE-RXN

no BLAST hits found

pyrimidine ribonucleosides degradation I

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
CYTIDEAM2-RXN (# #)
PPENTOMUT-RXN (#)

Missing reactions: 1

URPHOS-RXN

Evidence for , EC# EC-2.4.2.3URPHOS-RXN

no BLAST hits found

pyrimidine deoxyribonucleotides de novo biosynthesis II

Total # of reactions in pathway = 14

Present reactions: 9

Reaction Protein(s)
RXN-8850 (#)
DTMPKI-RXN (#)
DUTP-PYROP-RXN (#)
UDPREDUCT-RXN NIL
CDPREDUCT-RXN NIL
RXN0-723 NIL
RXN0-724 NIL
RIBONUCLEOSIDE-DIP-REDUCTII-RXN NIL
RXN0-722 NIL

Missing reactions: 5

DTDPKIN-RXN
DUDPKIN-RXN
DCTP-DEAM-RXN
DCDPKIN-RXN
RXN-11556

Evidence for , EC# EC-2.7.4.6DTDPKIN-RXN

no BLAST hits found

Evidence for , EC# EC-2.7.4.6DUDPKIN-RXN

no BLAST hits found

Evidence for , EC# EC-3.5.4.13DCTP-DEAM-RXN

no BLAST hits found

Evidence for , EC# EC-2.7.4.6DCDPKIN-RXN

no BLAST hits found

Evidence for CDP reductase, EC# EC-1.17.4RXN-11556

no BLAST hits found

pyrimidine deoxyribonucleosides degradation

Total # of reactions in pathway = 6

Present reactions: 4

Reaction Protein(s)
THYM-PHOSPH-RXN (#)
D-PPENTOMUT-RXN (#)
DEOXYRIBOSE-P-ALD-RXN (# #)
ACETALD-DEHYDROG-RXN (# #)

Missing reactions: 2

CYTIDEAM-RXN
URA-PHOSPH-RXN

Evidence for , EC# EC-3.5.4.14CYTIDEAM-RXN

no BLAST hits found

Evidence for URA-PHOSPH-RXN

no BLAST hits found

purine ribonucleosides degradation to ribose-1-phosphate

Total # of reactions in pathway = 6

Present reactions: 2

Reaction Protein(s)
XANTHOSINEPHOSPHORY-RXN (#)
PPENTOMUT-RXN (#)

Missing reactions: 4

ADENPHOSPHOR-RXN
ADENODEAMIN-RXN
INOPHOSPHOR-RXN
RXN0-5199

Evidence for adenosine phosphorylase, EC# EC-2.4.2.1ADENPHOSPHOR-RXN

no BLAST hits found

Evidence for , EC# EC-3.5.4.4ADENODEAMIN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5165-MONOMER Hypothetical protein 9.6593995e-4 1.0 A5N6F5 0.0744937527315004 1.0 0.30172414 348 NIL NIL
GN3K-3275-MONOMER DNA polymerase I 3.9928098e-5 1.0 A5N6F5 0.524871130064722 2.0 0.20402299 348 NIL NIL

Evidence for inosine phosphorylase, EC# EC-2.4.2.1INOPHOSPHOR-RXN

no BLAST hits found

Evidence for guanosine phosphorylase, EC# EC-2.4.2.1RXN0-5199

no BLAST hits found

purine nucleotides degradation IV (anaerobic)

Total # of reactions in pathway = 22

Present reactions: 9

Reaction Protein(s)
4.3.1.4-RXN (# # #)
METHENYLTHFCYCLOHYDRO-RXN (# # #)
FORMATETHFLIG-RXN (#)
METHYLENETHFDEHYDROG-NADP-RXN (# #)
GLYOHMETRANS-RXN (#)
4.3.1.17-RXN (# #)
PYRUFLAVREDUCT-RXN NIL
PHOSACETYLTRANS-RXN (#)
ACETATEKIN-RXN (#)

Missing reactions: 13

GUANINE-DEAMINASE-RXN
R127-RXN
R128-RXN
R62-RXN
R13-RXN
R63-RXN
GLYCINE-FORMIMINOTRANSFERASE-RXN
1.2.1.2-RXN
RXN0-901
RXN-8752
RXN-8751
RXN-8754
RXN-8753

Evidence for , EC# EC-3.5.4.3GUANINE-DEAMINASE-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 Q9WTT6 0.76178760181823 1.0 0.11013216 454 NIL NIL

Evidence for R127-RXN

Evidence for R128-RXN

Evidence for R62-RXN

Evidence for , EC# EC-3.5.4.8R13-RXN

Evidence for , EC# EC-3.5.2R63-RXN

Evidence for , EC# EC-2.1.2.4GLYCINE-FORMIMINOTRANSFERASE-RXN

no BLAST hits found

Evidence for , EC# EC-1.2.1.21.2.1.2-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 5.8898037e-5 1.0 P33160 0.191216462311197 1.0 0.10473815 401 NIL NIL
GN3K-3554-MONOMER orf00764 3.9928098e-5 3.0 Q60316 4.55992202075652e-5 1.3333334 0.20402466 379 NIL NIL
GN3K-3942-MONOMER orf01131 1.7231443e-5 2.0 Q2YYT1 0.0265633891562929 1.5 0.051801115 984 NIL NIL
GN3K-5271-MONOMER Transposase 1.6216387e-5 1.0 P06130 0.08672866289175 2.0 0.17293233 399 NIL NIL
GN3K-3594-MONOMER Hypothetical protein 6.0872053e-6 2.0 P06130 0.115177213321922 3.0 0.105200335 399 NIL NIL

Evidence for , EC# EC-1.17.1.4RXN0-901

no BLAST hits found

Evidence for RXN-8752

Evidence for RXN-8751

Evidence for RXN-8754

Evidence for RXN-8753

purine nucleotides degradation III (anaerobic)

Total # of reactions in pathway = 17

Present reactions: 5

Reaction Protein(s)
4.3.1.4-RXN (# # #)
METHENYLTHFCYCLOHYDRO-RXN (# # #)
FORMATETHFLIG-RXN (#)
RXN-7566 (#)
ACETATEKIN-RXN (#)

Missing reactions: 12

GUANINE-DEAMINASE-RXN
R127-RXN
R128-RXN
R62-RXN
R13-RXN
R63-RXN
GLYCINE-FORMIMINOTRANSFERASE-RXN
1.2.1.2-RXN
RXN0-901
RXN-8752
RXN-8755
RXN-7682

Evidence for , EC# EC-3.5.4.3GUANINE-DEAMINASE-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 Q9WTT6 0.76178760181823 1.0 0.11013216 454 NIL NIL

Evidence for R127-RXN

Evidence for R128-RXN

Evidence for R62-RXN

Evidence for , EC# EC-3.5.4.8R13-RXN

Evidence for , EC# EC-3.5.2R63-RXN

Evidence for , EC# EC-2.1.2.4GLYCINE-FORMIMINOTRANSFERASE-RXN

no BLAST hits found

Evidence for , EC# EC-1.2.1.21.2.1.2-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 5.8898037e-5 1.0 P33160 0.191216462311197 1.0 0.10473815 401 NIL NIL
GN3K-3554-MONOMER orf00764 3.9928098e-5 3.0 Q60316 4.55992202075652e-5 1.3333334 0.20402466 379 NIL NIL
GN3K-3942-MONOMER orf01131 1.7231443e-5 2.0 Q2YYT1 0.0265633891562929 1.5 0.051801115 984 NIL NIL
GN3K-5271-MONOMER Transposase 1.6216387e-5 1.0 P06130 0.08672866289175 2.0 0.17293233 399 NIL NIL
GN3K-3594-MONOMER Hypothetical protein 6.0872053e-6 2.0 P06130 0.115177213321922 3.0 0.105200335 399 NIL NIL

Evidence for , EC# EC-1.17.1.4RXN0-901

no BLAST hits found

Evidence for RXN-8752

Evidence for RXN-8755

Evidence for , EC# EC-1.17.1.4RXN-7682

no BLAST hits found

purine deoxyribonucleosides degradation

Total # of reactions in pathway = 7

Present reactions: 6

Reaction Protein(s)
DEOXYGUANPHOSPHOR-RXN (#)
DEOXYADENPHOSPHOR-RXN (#)
DEOXYINOPHOSPHOR-RXN (#)
D-PPENTOMUT-RXN (#)
DEOXYRIBOSE-P-ALD-RXN (# #)
ACETALD-DEHYDROG-RXN (# #)

Missing reactions: 1

ADDALT-RXN

Evidence for ADDALT-RXN

no BLAST hits found

ppGpp biosynthesis

Total # of reactions in pathway = 6

Present reactions: 3

Reaction Protein(s)
PPPGPPHYDRO-RXN (#)
GTPPYPHOSKIN-RXN (#)
GDPPYPHOSKIN-RXN (#)

Missing reactions: 3

PPGPPSYN-RXN
RXN0-6427
GDPKIN-RXN

Evidence for , EC# EC-3.1.7.2PPGPPSYN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 0.0020121129 1.0 Q9VAM9 0.00815338877069646 1.0 0.46368715 179 NIL NIL
GN3K-5165-MONOMER Hypothetical protein 5.8898037e-5 1.0 O51216 0.280836587797692 1.0 0.12443778 667 NIL NIL
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 Q54089 0.492593786821348 1.0 0.13261163 739 NIL NIL

Evidence for guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase, EC# EC-3.1.7.2RXN0-6427

no BLAST hits found

Evidence for , EC# EC-2.7.4.6GDPKIN-RXN

no BLAST hits found

phosphopantothenate biosynthesis II

Total # of reactions in pathway = 3

Present reactions: 1

Reaction Protein(s)
PANTOTHENATE-KIN-RXN (#)

Missing reactions: 2

1.1.1.168-RXN
RXN-6401

Evidence for , EC# EC-1.1.1.1681.1.1.168-RXN

Evidence for , EC# EC-6.3.2RXN-6401

phosphatidylglycerol biosynthesis II (non-plastidic)

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
PWY-5667 NIL
PHOSPHAGLYPSYN-RXN (# #)

Missing reactions: 1

PGPPHOSPHA-RXN

Evidence for , EC# EC-3.1.3.27PGPPHOSPHA-RXN

no BLAST hits found

phosphatidylglycerol biosynthesis I (plastidic)

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
PWY0-1319 NIL
PHOSPHAGLYPSYN-RXN (# #)

Missing reactions: 1

PGPPHOSPHA-RXN

Evidence for , EC# EC-3.1.3.27PGPPHOSPHA-RXN

no BLAST hits found

phenylalanine degradation III

Total # of reactions in pathway = 4

Present reactions: 2

Reaction Protein(s)
PHEAMINOTRANS-RXN (#)
RXN-7700 (#)

Missing reactions: 2

PHENYLPYRUVATE-DECARBOXYLASE-RXN
2.6.1.58-RXN

Evidence for , EC# EC-4.1.1.43PHENYLPYRUVATE-DECARBOXYLASE-RXN

no BLAST hits found

Evidence for , EC# EC-2.6.1.582.6.1.58-RXN

no BLAST hits found

phenylalanine biosynthesis I

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
PHEAMINOTRANS-RXN (#)
CHORISMATEMUT-RXN (#)

Missing reactions: 1

PREPHENATEDEHYDRAT-RXN

Evidence for , EC# EC-4.2.1.51PREPHENATEDEHYDRAT-RXN

no BLAST hits found

peptidoglycan biosynthesis V (β-lactam resistance)

Total # of reactions in pathway = 10

Present reactions: 3

Reaction Protein(s)
PWY-6386 NIL
RXN-11347 (# #)
RXN-11346 (# # #)

Missing reactions: 7

3.4.17.14-RXN
RXN-11345
RXN-11344
RXN-11343
RXN-11348
RXN-11349
2.4.1.129-RXN

Evidence for , EC# EC-3.4.17.143.4.17.14-RXN

no BLAST hits found

Evidence for RXN-11345

Evidence for , EC# EC-6.3.1.12RXN-11344

Evidence for RXN-11343

Evidence for , EC# EC-2.4.1.129RXN-11348

Evidence for , EC# EC-3.4.16RXN-11349

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 0.0020121129 1.0 D0ANH0 3.58254466072307e-8 1.0 0.43776825 466 NIL NIL

Evidence for Peptidoglycan glycosyltransferase, EC# EC-2.4.1.1292.4.1.129-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5129-MONOMER Vitamin B12 dependent met 5.8898037e-5 1.0 Q9R744 1.05530452851389e-4 1.0 0.13204952 727 NIL NIL

peptidoglycan biosynthesis III (mycobacteria)

Total # of reactions in pathway = 7

Present reactions: 2

Reaction Protein(s)
RXN-11029 (# # #)
PWY-6387 NIL

Missing reactions: 5

RXN-11028
RXN-11030
RXN-11031
RXN-11301
2.4.1.129-RXN

Evidence for , EC# EC-2.7.8RXN-11028

no BLAST hits found

Evidence for RXN-11030

no BLAST hits found

Evidence for RXN-11031

no BLAST hits found

Evidence for , EC# EC-2.4.1RXN-11301

no BLAST hits found

Evidence for Peptidoglycan glycosyltransferase, EC# EC-2.4.1.1292.4.1.129-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5129-MONOMER Vitamin B12 dependent met 5.8898037e-5 1.0 Q9R744 1.05530452851389e-4 1.0 0.13204952 727 NIL NIL

peptidoglycan biosynthesis I (meso-diaminopimelate containing)

Total # of reactions in pathway = 6

Present reactions: 4

Reaction Protein(s)
NACGLCTRANS-RXN (# # #)
PHOSNACMURPENTATRANS-RXN (# #)
RXN-11302 (# # #)
PWY-6387 NIL

Missing reactions: 2

RXN0-5405
2.4.1.129-RXN

Evidence for , EC# EC-2.4.1.129RXN0-5405

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5129-MONOMER Vitamin B12 dependent met 0.34008172 9.0 P0AD68 6.44490786093615e-19 1.0 0.327401 588 NIL NIL
GN3K-4771-MONOMER Cell division protein ABC 1.7231443e-5 1.0 Q9MUV9 0.198721303364715 2.0 0.0819398 598 NIL NIL

Evidence for Peptidoglycan glycosyltransferase, EC# EC-2.4.1.1292.4.1.129-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5129-MONOMER Vitamin B12 dependent met 5.8898037e-5 1.0 Q9R744 1.05530452851389e-4 1.0 0.13204952 727 NIL NIL

pentose phosphate pathway (non-oxidative branch)

Total # of reactions in pathway = 5

Present reactions: 3

Reaction Protein(s)
TRANSALDOL-RXN (#)
RIBULP3EPIM-RXN (#)
RIB5PISOM-RXN (#)

Missing reactions: 2

2TRANSKETO-RXN
1TRANSKETO-RXN

Evidence for D-Fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase, EC# EC-2.2.1.12TRANSKETO-RXN

no BLAST hits found

Evidence for , EC# EC-2.2.1.11TRANSKETO-RXN

no BLAST hits found

NAD/NADH phosphorylation and dephosphorylation

Total # of reactions in pathway = 6

Present reactions: 2

Reaction Protein(s)
NAD-KIN-RXN (# # #)
NADH-DEHYDROG-A-RXN (#)

Missing reactions: 4

PYRNUTRANSHYDROGEN-RXN
NADH-KINASE-RXN
RXN-7703
RXN-5822

Evidence for , EC# EC-1.6.1.1PYRNUTRANSHYDROGEN-RXN

no BLAST hits found

Evidence for , EC# EC-2.7.1.86NADH-KINASE-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5271-MONOMER Transposase 6.258456e-5 1.0 Q56YN3 0.072440834630405 1.0 0.099236645 524 NIL NIL

Evidence for , EC# EC-3.1.3RXN-7703

Evidence for NADP phosphatase, EC# EC-3.1.3RXN-5822

no BLAST hits found

NAD salvage pathway I

Total # of reactions in pathway = 8

Present reactions: 3

Reaction Protein(s)
NICONUCADENYLYLTRAN-RXN (#)
NICOTINATEPRIBOSYLTRANS-RXN (#)
NAD-SYNTH-GLN-RXN (#)

Missing reactions: 5

NMNAMIDOHYDRO-RXN
NADPYROPHOSPHAT-RXN
NADNUCLEOSID-RXN
NMNNUCLEOSID-RXN
NICOTINAMID-RXN

Evidence for , EC# EC-3.5.1.42NMNAMIDOHYDRO-RXN

no BLAST hits found

Evidence for , EC# EC-3.6.1.22NADPYROPHOSPHAT-RXN

no BLAST hits found

Evidence for , EC# EC-3.2.2.5NADNUCLEOSID-RXN

no BLAST hits found

Evidence for , EC# EC-3.2.2.14NMNNUCLEOSID-RXN

Evidence for , EC# EC-3.5.1.19NICOTINAMID-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4100-MONOMER Thiamin pyrophosphokinase 0.0029834409 2.0 Q9USS0 5.33590271496223e-4 1.0 0.54263467 220 NIL NIL
GN3K-3224-MONOMER Hydroxylamine reductase 6.258456e-5 1.0 P27765 0.523266594565834 1.0 0.03557312 506 NIL NIL

NAD biosynthesis I (from aspartate)

Total # of reactions in pathway = 6

Present reactions: 4

Reaction Protein(s)
NICONUCADENYLYLTRAN-RXN (#)
NAD-SYNTH-GLN-RXN (#)
NAD-SYNTH-NH3-RXN (#)
QUINOPRIBOTRANS-RXN (#)

Missing reactions: 2

QUINOLINATE-SYNTHA-RXN
L-ASPARTATE-OXID-RXN

Evidence for , EC# EC-2.5.1.72QUINOLINATE-SYNTHA-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3576-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q185P4 0.161091475745674 1.0 0.14473684 304 NIL NIL

Evidence for , EC# EC-1.4.3.16L-ASPARTATE-OXID-RXN

no BLAST hits found

mixed acid fermentation

Total # of reactions in pathway = 16

Present reactions: 6

Reaction Protein(s)
PHOSACETYLTRANS-RXN (#)
ACETATEKIN-RXN (#)
PYRUVFORMLY-RXN (#)
ACETALD-DEHYDROG-RXN (# #)
ALCOHOL-DEHYDROG-RXN (#)
PEPDEPHOS-RXN (#)

Missing reactions: 10

DLACTDEHYDROGNAD-RXN
FUMHYDR-RXN
PEPCARBOX-RXN
FHLMULTI-RXN
R601-RXN
CITSYN-RXN
ACONITATEDEHYDR-RXN
ACONITATEHYDR-RXN
ISOCITDEH-RXN
MALATE-DEH-RXN

Evidence for , EC# EC-1.1.1.28DLACTDEHYDROGNAD-RXN

no BLAST hits found

Evidence for , EC# EC-4.2.1.2FUMHYDR-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5165-MONOMER Hypothetical protein 1.4501007e-4 1.0 O66271 0.380573426357479 1.0 0.2274678 466 NIL NIL

Evidence for , EC# EC-4.1.1.31PEPCARBOX-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3399-MONOMER orf00617 6.258456e-5 1.0 A4VN44 0.0625675267997296 1.0 0.07736064 879 NIL NIL

Evidence for FHLMULTI-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3942-MONOMER orf01131 9.6593995e-4 1.0 P16432 0.00229655308914807 1.0 0.3611111 180 NIL NIL
GN3K-3594-MONOMER Hypothetical protein 3.9928098e-5 1.0 P16432 0.0164534361835148 2.0 0.28333333 180 NIL NIL
GN3K-3554-MONOMER orf00764 1.4988173e-5 1.0 P16432 0.0264730727019621 3.0 0.2888889 180 NIL NIL

Evidence for , EC# EC-1.3.5.4R601-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5271-MONOMER Transposase 1.4501007e-4 1.0 P0AC47 0.0184111090134787 1.0 0.29098362 244 NIL NIL
GN3K-3554-MONOMER orf00764 1.6216387e-5 1.0 P0AC47 0.0869116193842571 2.0 0.18852459 244 NIL NIL

Evidence for , EC# EC-2.3.3.1CITSYN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5165-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q5UZI9 0.0714995046188795 1.0 0.11811024 381 NIL NIL
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 O34002 0.35247478461291 1.0 0.14511873 379 NIL NIL
GN3K-4081-MONOMER orf01259 5.8898037e-5 1.0 P24118 0.136076226683792 1.0 0.16233766 462 NIL NIL

Evidence for , EC# EC-4.2.1.3ACONITATEDEHYDR-RXN

no BLAST hits found

Evidence for , EC# EC-4.2.1.3ACONITATEHYDR-RXN

no BLAST hits found

Evidence for , EC# EC-1.1.1.42ISOCITDEH-RXN

no BLAST hits found

Evidence for , EC# EC-1.1.1.37MALATE-DEH-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 9.6593995e-4 1.0 A7HT37 0.93398296100543 1.0 0.34234235 333 NIL NIL
GN3K-4029-MONOMER Chromosome partition prot 9.6593995e-4 1.0 Q54GE6 0.224148095668757 1.0 0.3657289 391 NIL NIL
GN3K-4295-MONOMER Hypothetical protein 1.4501007e-4 1.0 P83778 0.133543237525046 1.0 0.27893174 337 NIL NIL
GN3K-5164-MONOMER Lysyl-tRNA synthetase 3.9928098e-5 1.0 P83778 0.164517846222479 2.0 0.27893174 337 NIL NIL

methylglyoxal degradation VI

Total # of reactions in pathway = 4

Present reactions: 2

Reaction Protein(s)
RXN-8641 (#)
D-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN NIL

Missing reactions: 2

D-LACTALDEHYDE-DEHYDROGENASE-RXN
LACTALDEHYDE-OXI-RXN

Evidence for , EC# EC-1.1.1.78D-LACTALDEHYDE-DEHYDROGENASE-RXN

Evidence for LACTALDEHYDE-OXI-RXN

no BLAST hits found

methylglyoxal degradation V

Total # of reactions in pathway = 3

Present reactions: 1

Reaction Protein(s)
L-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN (#)

Missing reactions: 2

LACTALDDEHYDROG-RXN
1.1.1.283-RXN

Evidence for , EC# EC-1.2.1.22LACTALDDEHYDROG-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5165-MONOMER Hypothetical protein 6.258456e-5 1.0 A4FW36 0.595630434591078 1.0 0.077419356 465 NIL NIL
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 P25553 0.359014593587476 1.0 0.13778706 479 NIL NIL

Evidence for , EC# EC-1.1.1.2831.1.1.283-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 1.4501007e-4 1.0 P83775 0.678763824434476 1.0 0.20821114 341 NIL NIL
GN3K-3581-MONOMER Fructokinase 5.8898037e-5 1.0 O32210 1.31646058979479e-9 1.0 0.16666667 276 NIL NIL
GN3K-3580-MONOMER Sodium/alanine symporter 1.6216387e-5 1.0 O32210 6.2756530351221e-4 2.0 0.123188406 276 NIL NIL

methylerythritol phosphate pathway

Total # of reactions in pathway = 9

Present reactions: 8

Reaction Protein(s)
DXS-RXN (# #)
DXPREDISOM-RXN (#)
RXN0-302 (#)
RXN0-882 (#)
RXN0-884 (#)
ISPH2-RXN (#)
2.7.1.148-RXN (#)
2.7.7.60-RXN (#)

Missing reactions: 1

IPPISOM-RXN

Evidence for , EC# EC-5.3.3.2IPPISOM-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4870-MONOMER #Stage II sporulation pro 1.4501007e-4 1.0 Q8TX99 0.61756701907092 1.0 0.23013699 365 NIL NIL
GN3K-5032-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q6L1S1 0.138641447772347 1.0 0.18911175 349 NIL NIL

methionine biosynthesis II

Total # of reactions in pathway = 6

Present reactions: 3

Reaction Protein(s)
HOMOSERKIN-RXN (#)
HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN (#)
MMUM-RXN (#)

Missing reactions: 3

CYSPH-RXN
CYSTATHIONINE-BETA-LYASE-RXN
HOMOCYSMET-RXN

Evidence for , EC# EC-2.5.1CYSPH-RXN

no BLAST hits found

Evidence for , EC# EC-4.4.1.8CYSTATHIONINE-BETA-LYASE-RXN

no BLAST hits found

Evidence for , EC# EC-2.1.1.14HOMOCYSMET-RXN

no BLAST hits found

lysine biosynthesis VI

Total # of reactions in pathway = 8

Present reactions: 6

Reaction Protein(s)
ASPARTATEKIN-RXN (#)
ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN (#)
DIHYDRODIPICSYN-RXN (#)
RXN-7737 (#)
DIAMINOPIMEPIM-RXN (#)
DIHYDROPICRED-RXN (#)

Missing reactions: 2

DIAMINOPIMDECARB-RXN
RXN-13462

Evidence for , EC# EC-4.1.1.20DIAMINOPIMDECARB-RXN

no BLAST hits found

Evidence for (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinate dehydratase, EC# EC-4.2.1RXN-13462

no BLAST hits found

lactose and galactose degradation I

Total # of reactions in pathway = 4

Present reactions: 1

Reaction Protein(s)
LACTOSE-6-PHOSPHATE-ISOMERASE-RXN (#)

Missing reactions: 3

TAGAKIN-RXN
LACTOSE6P-HYDROXY-RXN
TAGAALDOL-RXN

Evidence for , EC# EC-2.7.1.144TAGAKIN-RXN

no BLAST hits found

Evidence for 6-phospho-lactosidase, EC# EC-3.2.1.85LACTOSE6P-HYDROXY-RXN

no BLAST hits found

Evidence for , EC# EC-4.1.2.40TAGAALDOL-RXN

no BLAST hits found

homoserine biosynthesis

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
ASPARTATEKIN-RXN (#)
ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN (#)

Missing reactions: 1

HOMOSERDEHYDROG-RXN

Evidence for , EC# EC-1.1.1.3HOMOSERDEHYDROG-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4877-MONOMER Protein of unknown functi 0.03088513 3.0 P00561 1.70057801696634e-16 1.0 0.33311227 820 NIL NIL
GN3K-3708-MONOMER Transcriptional regulator 5.8898037e-5 1.0 P31116 0.337071712370255 1.0 0.15598886 359 NIL NIL

homolactic fermentation

Total # of reactions in pathway = 4

Present reactions: 3

Reaction Protein(s)
PWY-5481 NIL
GLUCOKIN-RXN (# #)
PWY-5484 NIL

Missing reactions: 1

PGLUCISOM-RXN

Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN

no BLAST hits found

histidine degradation I

Total # of reactions in pathway = 4

Present reactions: 3

Reaction Protein(s)
HISTIDINE-AMMONIA-LYASE-RXN (#)
UROCANATE-HYDRATASE-RXN (#)
IMIDAZOLONEPROPIONASE-RXN (# # # #)

Missing reactions: 1

FORMIMINOGLUTAMASE-RXN

Evidence for , EC# EC-3.5.3.8FORMIMINOGLUTAMASE-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 9.6593995e-4 1.0 Q893K6 0.457078520038079 1.0 0.30473372 338 NIL NIL

histidine biosynthesis

Total # of reactions in pathway = 10

Present reactions: 1

Reaction Protein(s)
HISTIDPHOS-RXN (# #)

Missing reactions: 9

HISTALDEHYD-RXN
HISTOLDEHYD-RXN
HISTAMINOTRANS-RXN
IMIDPHOSDEHYD-RXN
GLUTAMIDOTRANS-RXN
PRIBFAICARPISOM-RXN
HISTPRATPHYD-RXN
HISTCYCLOHYD-RXN
ATPPHOSPHORIBOSYLTRANS-RXN

Evidence for Histidinal dehydrogenaseHISTALDEHYD-RXN

no BLAST hits found

Evidence for Histidinol dehydrogenaseHISTOLDEHYD-RXN

no BLAST hits found

Evidence for , EC# EC-2.6.1.9HISTAMINOTRANS-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4536-MONOMER Phage protein, integrase 0.024500009 15.0 B8DC01 2.65276037170286e-5 1.0 0.32310086 360 NIL NIL
GN3K-4091-MONOMER Hypothetical protein 5.8898037e-5 1.0 B9DK21 0.81501397813037 1.0 0.18361582 354 NIL NIL
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 Q0AM22 0.138371597403137 1.0 0.11878453 362 NIL NIL
GN3K-4538-MONOMER Ribonuclease R 5.8898037e-5 1.0 A6LUF3 0.035006116858152 1.0 0.1452514 358 NIL NIL
GN3K-3850-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q4FQF9 0.335795906480026 1.0 0.14323607 377 NIL NIL
GN3K-3399-MONOMER orf00617 3.9928098e-5 1.0 Q0BVW4 0.597789495648791 2.0 0.21081081 370 NIL NIL
GN3K-3602-MONOMER Hypothetical protein 1.7231443e-5 1.0 Q8EQB9 0.463385939182709 2.0 0.0989011 364 NIL NIL
GN3K-4120-MONOMER Uracil phosphoribosyltran 1.6216387e-5 3.0 B9EAC1 0.225778174188775 1.3333334 0.15161668 350 NIL NIL

Evidence for , EC# EC-4.2.1.19IMIDPHOSDEHYD-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 2.6612708e-4 1.0 Q65RB3 0.767182793394533 2.0 0.3561644 365 NIL NIL
GN3K-3569-MONOMER Hypothetical protein 1.4501007e-4 2.0 Q1IZQ5 0.0596324067857223 1.0 0.2560699 203 NIL NIL

Evidence for , EC# EC-2.4.2GLUTAMIDOTRANS-RXN

no BLAST hits found

Evidence for , EC# EC-5.3.1.16PRIBFAICARPISOM-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 9.6593995e-4 1.0 Q8R884 0.748610656074075 1.0 0.39166668 240 NIL NIL
GN3K-4067-MONOMER Geranyltranstransferase 9.6593995e-4 1.0 B1I557 0.661265967318539 1.0 0.35496184 262 NIL NIL
GN3K-4103-MONOMER Serine/threonine protein 9.6593995e-4 1.0 B1H0E7 0.607277275416951 1.0 0.36065573 244 NIL NIL
GN3K-3399-MONOMER orf00617 1.4501007e-4 2.0 Q04W72 0.0704390569545743 1.0 0.27913138 241 NIL NIL
GN3K-5082-MONOMER Stage 0 sporulation prote 5.8898037e-5 1.0 Q5QWQ6 0.100760005616275 1.0 0.17959183 245 NIL NIL

Evidence for , EC# EC-3.6.1.31HISTPRATPHYD-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 0.0029834409 1.0 Q31E63 0.0985624219290555 1.0 0.5840708 113 NIL NIL

Evidence for , EC# EC-3.5.4.19HISTCYCLOHYD-RXN

no BLAST hits found

Evidence for , EC# EC-2.4.2.17ATPPHOSPHORIBOSYLTRANS-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5127-MONOMER S-ribosylhomocysteinase, 1.4501007e-4 3.0 B8D111 0.0225097258333406 1.0 0.29853323 223 NIL NIL
GN3K-3554-MONOMER orf00764 1.6216387e-5 2.0 A9BJZ4 0.190275159342593 1.5 0.14948751 210 NIL NIL

heterolactic fermentation

Total # of reactions in pathway = 18

Present reactions: 11

Reaction Protein(s)
RIBULP3EPIM-RXN (#)
GAPOXNPHOSPHN-RXN (#)
PHOSGLYPHOS-RXN (#)
3PGAREARR-RXN (# # #)
2PGADEHYDRAT-RXN (#)
PEPDEPHOS-RXN (#)
PHOSACETYLTRANS-RXN (#)
ACETALD-DEHYDROG-RXN (# #)
ALCOHOL-DEHYDROG-RXN (#)
L-LACTATE-DEHYDROGENASE-RXN (#)
GLUCOKIN-RXN (# #)

Missing reactions: 7

6PGLUCONDEHYDROG-RXN
PHOSPHOKETOLASE-RXN
GLU6PDEHYDROG-RXN
6PGLUCONOLACT-RXN
FRUCTOKINASE-RXN
PGLUCISOM-RXN
DLACTDEHYDROGNAD-RXN

Evidence for phosphogluconate dehydrogenase [NAD(P)+-dependent, decarboxylating], EC# EC-1.1.16PGLUCONDEHYDROG-RXN

Evidence for , EC# EC-4.1.2.9PHOSPHOKETOLASE-RXN

no BLAST hits found

Evidence for , EC# EC-1.1.1.49GLU6PDEHYDROG-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 1.4501007e-4 1.0 Q9Z3S2 0.0491119781323875 1.0 0.23421589 491 NIL NIL
GN3K-3973-MONOMER Hypothetical protein 6.258456e-5 1.0 O83491 0.0534297897143757 1.0 0.07378641 515 NIL NIL

Evidence for , EC# EC-3.1.1.316PGLUCONOLACT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3399-MONOMER orf00617 0.97360426 16.0 Q49700 1.07661706264504e-15 1.0 0.7741239 247 NIL NIL

Evidence for fructokinase, EC# EC-2.7.1.4FRUCTOKINASE-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 1.4501007e-4 1.0 Q9ZHJ6 0.21075339287014 1.0 0.23076923 312 NIL NIL

Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN

no BLAST hits found

Evidence for , EC# EC-1.1.1.28DLACTDEHYDROGNAD-RXN

no BLAST hits found

heme biosynthesis from uroporphyrinogen-III II

Total # of reactions in pathway = 4

Present reactions: 2

Reaction Protein(s)
PROTOHEMEFERROCHELAT-RXN (#)
HEMN-RXN (#)

Missing reactions: 2

UROGENDECARBOX-RXN
RXN0-6259

Evidence for , EC# EC-4.1.1.37UROGENDECARBOX-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5422-MONOMER Uroporphyrinogen-III meth 1.4501007e-4 1.0 Q11X05 0.0361039359937739 1.0 0.22674419 344 NIL NIL
GN3K-4012-MONOMER Capsule biosynthesis prot 1.4501007e-4 1.0 Q5GTT1 0.806961061597943 1.0 0.29971182 347 NIL NIL
GN3K-3172-MONOMER CDP-diacylglycerol--glyce 6.258456e-5 1.0 P29680 0.41117452696262 1.0 0.059322033 354 NIL NIL

Evidence for , EC# EC-1.3.5.3RXN0-6259

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3587-MONOMER Aluminum resistance prote 1.4501007e-4 1.0 P0ACB4 0.031056071722715 1.0 0.28176796 181 NIL NIL

heme biosynthesis from uroporphyrinogen-III I

Total # of reactions in pathway = 4

Present reactions: 2

Reaction Protein(s)
PROTOHEMEFERROCHELAT-RXN (#)
RXN0-1461 (#)

Missing reactions: 2

UROGENDECARBOX-RXN
PROTOPORGENOXI-RXN

Evidence for , EC# EC-4.1.1.37UROGENDECARBOX-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5422-MONOMER Uroporphyrinogen-III meth 1.4501007e-4 1.0 Q11X05 0.0361039359937739 1.0 0.22674419 344 NIL NIL
GN3K-4012-MONOMER Capsule biosynthesis prot 1.4501007e-4 1.0 Q5GTT1 0.806961061597943 1.0 0.29971182 347 NIL NIL
GN3K-3172-MONOMER CDP-diacylglycerol--glyce 6.258456e-5 1.0 P29680 0.41117452696262 1.0 0.059322033 354 NIL NIL

Evidence for , EC# EC-1.3.3.4PROTOPORGENOXI-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3587-MONOMER Aluminum resistance prote 1.4501007e-4 1.0 P0ACB4 0.031056071722715 1.0 0.28176796 181 NIL NIL

guanosine nucleotides degradation III

Total # of reactions in pathway = 4

Present reactions: 1

Reaction Protein(s)
RXN-7609 (#)

Missing reactions: 3

GUANINE-DEAMINASE-RXN
RXN0-901
RXN0-5199

Evidence for , EC# EC-3.5.4.3GUANINE-DEAMINASE-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 Q9WTT6 0.76178760181823 1.0 0.11013216 454 NIL NIL

Evidence for , EC# EC-1.17.1.4RXN0-901

no BLAST hits found

Evidence for guanosine phosphorylase, EC# EC-2.4.2.1RXN0-5199

no BLAST hits found

guanosine nucleotides de novo biosynthesis

Total # of reactions in pathway = 9

Present reactions: 6

Reaction Protein(s)
IMP-DEHYDROG-RXN (#)
GMP-SYN-GLUT-RXN (#)
GUANYL-KIN-RXN (#)
GDPREDUCT-RXN NIL
RXN0-746 NIL
RXN0-748 NIL

Missing reactions: 3

GMP-SYN-NH3-RXN
GDPKIN-RXN
DGDPKIN-RXN

Evidence for , EC# EC-6.3.4.1GMP-SYN-NH3-RXN

no BLAST hits found

Evidence for , EC# EC-2.7.4.6GDPKIN-RXN

no BLAST hits found

Evidence for , EC# EC-2.7.4.6DGDPKIN-RXN

no BLAST hits found

guanine and guanosine salvage I

Total # of reactions in pathway = 2

Present reactions: 1

Reaction Protein(s)
GUANPRIBOSYLTRAN-RXN (# #)

Missing reactions: 1

RXN0-5199

Evidence for guanosine phosphorylase, EC# EC-2.4.2.1RXN0-5199

no BLAST hits found

glycolysis IV (plant cytosol)

Total # of reactions in pathway = 10

Present reactions: 9

Reaction Protein(s)
6PFRUCTPHOS-RXN (#)
F16ALDOLASE-RXN (#)
TRIOSEPISOMERIZATION-RXN (#)
GAPOXNPHOSPHN-RXN (#)
PHOSGLYPHOS-RXN (#)
3PGAREARR-RXN (# # #)
2PGADEHYDRAT-RXN (#)
PEPDEPHOS-RXN (#)
1.2.1.9-RXN (#)

Missing reactions: 1

2.7.1.90-RXN

Evidence for , EC# EC-2.7.1.902.7.1.90-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 5.8898037e-5 2.0 Q9KH71 0.0973721449398092 1.0 0.13407099 346 NIL NIL

glycolysis III (glucokinase)

Total # of reactions in pathway = 10

Present reactions: 9

Reaction Protein(s)
GLUCOKIN-RXN (# #)
6PFRUCTPHOS-RXN (#)
F16ALDOLASE-RXN (#)
TRIOSEPISOMERIZATION-RXN (#)
GAPOXNPHOSPHN-RXN (#)
PHOSGLYPHOS-RXN (#)
3PGAREARR-RXN (# # #)
2PGADEHYDRAT-RXN (#)
PEPDEPHOS-RXN (#)

Missing reactions: 1

PGLUCISOM-RXN

Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN

no BLAST hits found

glycogen degradation II

Total # of reactions in pathway = 5

Present reactions: 2

Reaction Protein(s)
GLYCOPHOSPHORYL-RXN (# #)
RXN-9025 (# #)

Missing reactions: 3

3.2.1.33-RXN
RXN-9023
PHOSPHOGLUCMUT-RXN

Evidence for , EC# EC-3.2.1.333.2.1.33-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 6.258456e-5 2.0 Q06625 0.0402713514228128 1.0 0.05336888 1536 NIL NIL

Evidence for , EC# EC-2.4.1.25RXN-9023

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 0.077747874 3.0 O86956 5.21965510766094e-35 1.0 0.32064715 442 NIL NIL
GN3K-5261-MONOMER Transcriptional regulator 0.01796768 1.0 O86956 1.14099767422618e-13 2.0 0.4954751 442 NIL NIL
GN3K-5251-MONOMER ABC transporter, ATP-bind 1.4988173e-5 1.0 O86956 4.30849489812474e-6 3.0 0.21493213 442 NIL NIL

Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5423-MONOMER Porphobilinogen deaminase 6.258456e-5 1.0 Q03262 0.721210927867915 1.0 0.096463025 622 NIL NIL
GN3K-4295-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q49WH7 0.382450792993071 1.0 0.17391305 552 NIL NIL

glycogen degradation I

Total # of reactions in pathway = 7

Present reactions: 4

Reaction Protein(s)
GLYCOPHOSPHORYL-RXN (# #)
RXN0-5182 (# #)
RXN0-5183 (# # #)
GLUCOKIN-RXN (# #)

Missing reactions: 3

AMYLOMALT-RXN
PHOSPHOGLUCMUT-RXN
RXN0-5146

Evidence for 4-α-glucanotransferase, EC# EC-2.4.1.25AMYLOMALT-RXN

no BLAST hits found

Evidence for , EC# EC-5.4.2.2PHOSPHOGLUCMUT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5423-MONOMER Porphobilinogen deaminase 6.258456e-5 1.0 Q03262 0.721210927867915 1.0 0.096463025 622 NIL NIL
GN3K-4295-MONOMER Hypothetical protein 5.8898037e-5 1.0 Q49WH7 0.382450792993071 1.0 0.17391305 552 NIL NIL

Evidence for , EC# EC-3.2.1.33RXN0-5146

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 0.016743753 1.0 P15067 1.11056907304731e-4 1.0 0.62709284 657 NIL NIL
GN3K-5251-MONOMER ABC transporter, ATP-bind 5.547801e-4 1.0 P15067 7.2588129675081e-4 2.0 0.40943682 657 NIL NIL

glycerol-3-phosphate shuttle

Total # of reactions in pathway = 2

Present reactions: 1

Reaction Protein(s)
RXN0-5260 (#)

Missing reactions: 1

1.1.1.8-RXN

Evidence for , EC# EC-1.1.1.81.1.1.8-RXN

no BLAST hits found

gluconeogenesis I

Total # of reactions in pathway = 12

Present reactions: 8

Reaction Protein(s)
F16BDEPHOS-RXN (# #)
F16ALDOLASE-RXN (#)
GAPOXNPHOSPHN-RXN (#)
PHOSGLYPHOS-RXN (#)
3PGAREARR-RXN (# # #)
2PGADEHYDRAT-RXN (#)
PEPCARBOXYKIN-RXN (#)
PEPSYNTH-RXN (#)

Missing reactions: 4

PGLUCISOM-RXN
MALATE-DEH-RXN
MALIC-NAD-RXN
MALIC-NADP-RXN

Evidence for glucose-6-phosphate isomerase, EC# EC-5.3.1.9PGLUCISOM-RXN

no BLAST hits found

Evidence for , EC# EC-1.1.1.37MALATE-DEH-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 9.6593995e-4 1.0 A7HT37 0.93398296100543 1.0 0.34234235 333 NIL NIL
GN3K-4029-MONOMER Chromosome partition prot 9.6593995e-4 1.0 Q54GE6 0.224148095668757 1.0 0.3657289 391 NIL NIL
GN3K-4295-MONOMER Hypothetical protein 1.4501007e-4 1.0 P83778 0.133543237525046 1.0 0.27893174 337 NIL NIL
GN3K-5164-MONOMER Lysyl-tRNA synthetase 3.9928098e-5 1.0 P83778 0.164517846222479 2.0 0.27893174 337 NIL NIL

Evidence for , EC# EC-1.1.1.38MALIC-NAD-RXN

no BLAST hits found

Evidence for , EC# EC-1.1.1.40MALIC-NADP-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 Q9ZDF6 0.906119646906433 1.0 0.16558018 767 NIL NIL

galactose degradation III

Total # of reactions in pathway = 6

Present reactions: 3

Reaction Protein(s)
GALACTOKIN-RXN (#)
UDPGLUCEPIM-RXN (# #)
GLUC1PURIDYLTRANS-RXN (# #)

Missing reactions: 3

UTPHEXPURIDYLYLTRANS-RXN
SUCROSE-SYNTHASE-RXN
UGD-RXN

Evidence for , EC# EC-2.7.7.10UTPHEXPURIDYLYLTRANS-RXN

no BLAST hits found

Evidence for Sucrose synthase, EC# EC-2.4.1.13SUCROSE-SYNTHASE-RXN

no BLAST hits found

Evidence for , EC# EC-1.1.1.22UGD-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 5.8898037e-5 1.0 O54068 0.320376022809788 1.0 0.112128146 437 NIL NIL

formylTHF biosynthesis I

Total # of reactions in pathway = 12

Present reactions: 7

Reaction Protein(s)
FORMATETHFLIG-RXN (#)
METHENYLTHFCYCLOHYDRO-RXN (# # #)
GLYOHMETRANS-RXN (#)
METHYLENETHFDEHYDROG-NADP-RXN (# #)
1.5.1.20-RXN (#)
HOMOCYSMETB12-RXN (# #)
5-FORMYL-THF-CYCLO-LIGASE-RXN (#)

Missing reactions: 5

FORMYLTHFDEFORMYL-RXN
DIHYDROFOLATEREDUCT-RXN
GCVMULTI-RXN
THYMIDYLATESYN-RXN
DIHYDROFOLATESYNTH-RXN

Evidence for formyltetrahydrofolate deformylase, EC# EC-3.5.1.10FORMYLTHFDEFORMYL-RXN

no BLAST hits found

Evidence for , EC# EC-1.5.1.3DIHYDROFOLATEREDUCT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5165-MONOMER Hypothetical protein 1.4501007e-4 1.0 P13955 0.917500922905107 1.0 0.2857143 161 NIL NIL
GN3K-5037-MONOMER Radical SAM (S-adenosylme 1.4501007e-4 1.0 Q9U8B8 0.549885792997151 1.0 0.28108108 185 NIL NIL
GN3K-4305-MONOMER ABC transporter, ATP-bind 1.4501007e-4 1.0 P43791 0.0729869211974513 1.0 0.2375 160 NIL NIL
GN3K-4081-MONOMER orf01259 1.4501007e-4 1.0 Q5V600 0.237438219287171 1.0 0.2754491 167 NIL NIL

Evidence for GCVMULTI-RXN

no BLAST hits found

Evidence for , EC# EC-2.1.1.45THYMIDYLATESYN-RXN

no BLAST hits found

Evidence for , EC# EC-6.3.2.12DIHYDROFOLATESYNTH-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4752-MONOMER Hydrolase 0.14950857 3.0 Q8W041 6.85656738641337e-37 1.0 0.49398634 530 NIL NIL

folate transformations II

Total # of reactions in pathway = 11

Present reactions: 7

Reaction Protein(s)
GLYOHMETRANS-RXN (#)
METHYLENETHFDEHYDROG-NADP-RXN (# #)
METHENYLTHFCYCLOHYDRO-RXN (# # #)
FORMATETHFLIG-RXN (#)
1.5.1.20-RXN (#)
5-FORMYL-THF-CYCLO-LIGASE-RXN (#)
HOMOCYSMETB12-RXN (# #)

Missing reactions: 4

DIHYDROFOLATEREDUCT-RXN
GCVMULTI-RXN
THYMIDYLATESYN-RXN
RXN-6321

Evidence for , EC# EC-1.5.1.3DIHYDROFOLATEREDUCT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5165-MONOMER Hypothetical protein 1.4501007e-4 1.0 P13955 0.917500922905107 1.0 0.2857143 161 NIL NIL
GN3K-5037-MONOMER Radical SAM (S-adenosylme 1.4501007e-4 1.0 Q9U8B8 0.549885792997151 1.0 0.28108108 185 NIL NIL
GN3K-4305-MONOMER ABC transporter, ATP-bind 1.4501007e-4 1.0 P43791 0.0729869211974513 1.0 0.2375 160 NIL NIL
GN3K-4081-MONOMER orf01259 1.4501007e-4 1.0 Q5V600 0.237438219287171 1.0 0.2754491 167 NIL NIL

Evidence for GCVMULTI-RXN

no BLAST hits found

Evidence for , EC# EC-2.1.1.45THYMIDYLATESYN-RXN

no BLAST hits found

Evidence for RXN-6321

no BLAST hits found

folate transformations I

Total # of reactions in pathway = 12

Present reactions: 8

Reaction Protein(s)
FORMATETHFLIG-RXN (#)
METHENYLTHFCYCLOHYDRO-RXN (# # #)
GLYOHMETRANS-RXN (#)
METHYLENETHFDEHYDROG-NADP-RXN (# #)
HOMOCYSMETB12-RXN (# #)
1.5.1.20-RXN (#)
5-FORMYL-THF-CYCLO-LIGASE-RXN (#)
RXN-5061 NIL

Missing reactions: 4

FORMYLTHFDEFORMYL-RXN
GCVMULTI-RXN
2.1.1.19-RXN
1.5.1.15-RXN

Evidence for formyltetrahydrofolate deformylase, EC# EC-3.5.1.10FORMYLTHFDEFORMYL-RXN

no BLAST hits found

Evidence for GCVMULTI-RXN

no BLAST hits found

Evidence for , EC# EC-2.1.1.192.1.1.19-RXN

Evidence for , EC# EC-1.5.1.151.5.1.15-RXN

no BLAST hits found

fluoroacetate and fluorothreonine biosynthesis

Total # of reactions in pathway = 6

Present reactions: 1

Reaction Protein(s)
RXN-11743 (#)

Missing reactions: 5

RXN-11747
RXN-11744
RXN-11745
2.5.1.63-RXN
RXN-11746

Evidence for , EC# EC-2.2.1.8RXN-11747

no BLAST hits found

Evidence for 5-fluoro-5-deoxy-D-ribose-1-phosphate isomerase, EC# EC-5.3.1RXN-11744

no BLAST hits found

Evidence for 5-fluoro-5-deoxy-d-ribulose-1-phosphate aldolaseRXN-11745

Evidence for , EC# EC-2.5.1.632.5.1.63-RXN

no BLAST hits found

Evidence for , EC# EC-1.2.1.69RXN-11746

Entner-Doudoroff pathway III (semi-phosphorylative)

Total # of reactions in pathway = 9

Present reactions: 5

Reaction Protein(s)
DEOXYGLUCONOKIN-RXN (# # #)
3PGAREARR-RXN (# # #)
2PGADEHYDRAT-RXN (#)
PEPDEPHOS-RXN (#)
KDPGALDOL-RXN (#)

Missing reactions: 4

GLUCOSE-1-DEHYDROGENASE-RXN
GLUCONOLACT-RXN
GLUCONATE-DEHYDRATASE-RXN
RXN-3443

Evidence for , EC# EC-1.1.1.47GLUCOSE-1-DEHYDROGENASE-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 0.0020121129 1.0 P07999 0.0712628304946391 1.0 0.41984734 262 NIL NIL

Evidence for , EC# EC-3.1.1.17GLUCONOLACT-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 9.6593995e-4 1.0 Q01578 0.0108967960348194 1.0 0.38483146 356 NIL NIL

Evidence for , EC# EC-4.2.1.39GLUCONATE-DEHYDRATASE-RXN

no BLAST hits found

Evidence for , EC# EC-1.2.1.3RXN-3443

Entner-Doudoroff pathway I

Total # of reactions in pathway = 2

Present reactions: 1

Reaction Protein(s)
KDPGALDOL-RXN (#)

Missing reactions: 1

PGLUCONDEHYDRAT-RXN

Evidence for , EC# EC-4.2.1.12PGLUCONDEHYDRAT-RXN

no BLAST hits found

chitin degradation II

Total # of reactions in pathway = 5

Present reactions: 3

Reaction Protein(s)
3.2.1.14-RXN (#)
RXN-12623 (#)
RXN-12624 (#)

Missing reactions: 2

RXN-12625
RXN-12626

Evidence for N,N'-diacetylchitobiose β-N-acetylglucosaminidase, EC# EC-3.2.1.52RXN-12625

no BLAST hits found

Evidence for chitotriose β-N-acetylglucosaminidase, EC# EC-3.2.1.52RXN-12626

no BLAST hits found

cardiolipin biosynthesis I

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
CARDIOLIPSYN-RXN (# #)
PHOSPHAGLYPSYN-RXN (# #)

Missing reactions: 1

PGPPHOSPHA-RXN

Evidence for , EC# EC-3.1.3.27PGPPHOSPHA-RXN

no BLAST hits found

biotin biosynthesis from 7-keto-8-aminopelargonate

Total # of reactions in pathway = 3

Present reactions: 1

Reaction Protein(s)
2.8.1.6-RXN (# #)

Missing reactions: 2

DETHIOBIOTIN-SYN-RXN
DAPASYN-RXN

Evidence for , EC# EC-6.3.3.3DETHIOBIOTIN-SYN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4322-MONOMER Formate acetyltransferase 5.8898037e-5 3.0 Q2IM14 0.29901985476215 1.0 0.1599402 223 NIL NIL
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 O66832 0.429903379079802 1.0 0.13181818 220 NIL NIL

Evidence for , EC# EC-2.6.1.62DAPASYN-RXN

no BLAST hits found

autoinducer AI-2 biosynthesis II (Vibrio)

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN (#)
RIBOSYLHOMOCYSTEINASE-RXN (#)

Missing reactions: 1

RXN-7605

Evidence for , EC# EC-2.1.1RXN-7605

autoinducer AI-2 biosynthesis I

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN (#)
RIBOSYLHOMOCYSTEINASE-RXN (#)

Missing reactions: 1

RXN-7605

Evidence for , EC# EC-2.1.1RXN-7605

arginine degradation X (arginine monooxygenase pathway)

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
GUANIDINOBUTANAMIDE-NH3-RXN (# # # #)
ARGININE-2-MONOOXYGENASE-RXN (#)

Missing reactions: 1

GUANIDINOBUTYRASE-RXN

Evidence for , EC# EC-3.5.3.7GUANIDINOBUTYRASE-RXN

no BLAST hits found

arginine biosynthesis II (acetyl cycle)

Total # of reactions in pathway = 9

Present reactions: 4

Reaction Protein(s)
N-ACETYLGLUTPREDUCT-RXN (#)
GLUTAMATE-N-ACETYLTRANSFERASE-RXN (#)
CARBPSYN-RXN (# #)
N-ACETYLTRANSFER-RXN (#)

Missing reactions: 5

ARGSUCCINSYN-RXN
ARGSUCCINLYA-RXN
ORNCARBAMTRANSFER-RXN
ACETYLORNTRANSAM-RXN
ACETYLGLUTKIN-RXN

Evidence for , EC# EC-6.3.4.5ARGSUCCINSYN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4029-MONOMER Chromosome partition prot 6.258456e-5 1.0 Q489P3 0.198105109501754 1.0 0.059808612 418 NIL NIL
GN3K-4322-MONOMER Formate acetyltransferase 5.8898037e-5 2.0 Q7PR38 0.291102282412449 1.0 0.108772784 424 NIL NIL

Evidence for , EC# EC-4.3.2.1ARGSUCCINLYA-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4981-MONOMER (Exo)Nuclease SbcCD, subu 6.258456e-5 2.0 Q7VFF8 0.215551823960037 1.0 0.06302966 472 NIL NIL
GN3K-3554-MONOMER orf00764 5.8898037e-5 2.0 Q9RWJ0 0.331787836002265 1.0 0.17276798 471 NIL NIL

Evidence for , EC# EC-2.1.3.3ORNCARBAMTRANSFER-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3554-MONOMER orf00764 5.8898037e-5 1.0 Q8TWG4 0.588142900115949 1.0 0.17628205 312 NIL NIL

Evidence for , EC# EC-2.6.1.11ACETYLORNTRANSAM-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5129-MONOMER Vitamin B12 dependent met 0.0020121129 1.0 P24087 0.118715014801167 1.0 0.4187192 406 NIL NIL

Evidence for , EC# EC-2.7.2.8ACETYLGLUTKIN-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-5135-MONOMER Carbamoyl-phosphate synth 0.02452547 1.0 A0AJ38 0.71909406134565 1.0 0.308 250 T NIL
GN3K-4877-MONOMER Protein of unknown functi 0.0020121129 7.0 Q2RP10 0.00309082140683105 1.0 0.47649485 310 NIL NIL
GN3K-3554-MONOMER orf00764 9.6593995e-4 1.0 Q4A0M9 0.650974954247449 1.0 0.3952569 253 NIL NIL
GN3K-5169-MONOMER tRNA-Gln 2.4864994e-4 1.0 Q1D264 0.397068755388458 1.0 0.064935066 308 T NIL
GN3K-4081-MONOMER orf01259 1.4501007e-4 2.0 Q5WEW9 0.203367772580766 1.0 0.28958946 257 NIL NIL
GN3K-5386-MONOMER DNA integrity scanning pr 1.6216387e-5 6.0 Q1J2A2 0.0444201191720533 1.1666666 0.13953358 249 NIL NIL

alanine biosynthesis I

Total # of reactions in pathway = 3

Present reactions: 1

Reaction Protein(s)
ALARACECAT-RXN (# # # #)

Missing reactions: 2

BRANCHED-CHAINAMINOTRANSFERVAL-RXN
VALINE-PYRUVATE-AMINOTRANSFER-RXN

Evidence for Valine transaminase, EC# EC-2.6.1.42BRANCHED-CHAINAMINOTRANSFERVAL-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-4081-MONOMER orf01259 0.5867721 2.0 tr|A6UWA0|A6UWA0_META3 1.03125053024547e-13 1.0 0.7806656 286 NIL NIL

Evidence for , EC# EC-2.6.1.66VALINE-PYRUVATE-AMINOTRANSFER-RXN

no BLAST hits found

adenosylcobalamin salvage from cobinamide I

Total # of reactions in pathway = 6

Present reactions: 4

Reaction Protein(s)
COBINAMIDEKIN-RXN (#)
DMBPPRIBOSYLTRANS-RXN (#)
BTUR2-RXN (#)
COBALAMIN5PSYN-RXN (#)

Missing reactions: 2

COBINPGUANYLYLTRANS-RXN
RXN-8770

Evidence for , EC# EC-2.7.7.62COBINPGUANYLYLTRANS-RXN

no BLAST hits found

Evidence for , EC# EC-3.1.3.73RXN-8770

no BLAST hits found

adenosylcobalamin biosynthesis I (early cobalt insertion)

Total # of reactions in pathway = 14

Present reactions: 5

Reaction Protein(s)
RXN-8769 (#)
RXN-8675 (# #)
UROPORIIIMETHYLTRANSA-RXN (# #)
RXN-8759 (#)
PWY-5509 NIL

Missing reactions: 9

RXN-8763
RXN-8765
RXN-8768
RXN-8760
RXN-8761
RXN-8762
RXN-8764
RXN-8766
RXN-8767

Evidence for , EC# EC-3.7.1.12RXN-8763

no BLAST hits found

Evidence for RXN-8765

no BLAST hits found

Evidence for RXN-8768

no BLAST hits found

Evidence for Cobalt-precorrin-2 C(20)-methyltransferase, EC# EC-2.1.1.151RXN-8760

no BLAST hits found

Evidence for cobalt-precorrin-3 (C17)-methyltransferase, EC# EC-2.1.1.131RXN-8761

no BLAST hits found

Evidence for cobalt precorrin-4 (C11)-methyltransferase, EC# EC-2.1.1.133RXN-8762

no BLAST hits found

Evidence for , EC# EC-2.1.1.195RXN-8764

no BLAST hits found

Evidence for cobalt-precorrin-6B methylase, EC# EC-2.1.1RXN-8766

no BLAST hits found

Evidence for , EC# EC-2.1.1.196RXN-8767

adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I

Total # of reactions in pathway = 8

Present reactions: 4

Reaction Protein(s)
R344-RXN (#)
R345-RXN (#)
COBALAMIN5PSYN-RXN (#)
DMBPPRIBOSYLTRANS-RXN (#)

Missing reactions: 4

R343-RXN
COBINPGUANYLYLTRANS-RXN
RXN-6261
RXN-8770

Evidence for , EC# EC-1.16.8.1R343-RXN

Hit Common P #Q Best Qry Best Eval Avg Rank Aln Len Qry Len IDOP? adj?
GN3K-3587-MONOMER Aluminum resistance prote 0.016743753 1.0 Q8ZQX1 0.00138447292635106 1.0 0.6306818 176 NIL NIL
GN3K-3399-MONOMER orf00617 1.4501007e-4 1.0 D5AV14 0.783721048112424 1.0 0.25120774 207 NIL NIL

Evidence for , EC# EC-2.7.7.62COBINPGUANYLYLTRANS-RXN

no BLAST hits found

Evidence for , EC# EC-6.3.1.10RXN-6261

no BLAST hits found

Evidence for , EC# EC-3.1.3.73RXN-8770

no BLAST hits found

adenosine nucleotides degradation I

Total # of reactions in pathway = 8

Present reactions: 4

Reaction Protein(s)
IMP-DEHYDROG-RXN (#)
XMPXAN-RXN (#)
RXN-7607 (#)
INOSINE-NUCLEOSIDASE-RXN (#)

Missing reactions: 4

AMP-DEAMINASE-RXN
RXN0-363
RXN0-901
RXN-7682

Evidence for , EC# EC-3.5.4.6AMP-DEAMINASE-RXN

no BLAST hits found

Evidence for , EC# EC-3.2.2.1RXN0-363

no BLAST hits found

Evidence for , EC# EC-1.17.1.4RXN0-901

no BLAST hits found

Evidence for , EC# EC-1.17.1.4RXN-7682

no BLAST hits found

adenosine nucleotides de novo biosynthesis

Total # of reactions in pathway = 8

Present reactions: 7

Reaction Protein(s)
ADENYLOSUCCINATE-SYNTHASE-RXN (#)
AMPSYN-RXN (#)
ADENYL-KIN-RXN (#)
ADPREDUCT-RXN (#)
RXN0-745 NIL
RXN0-747 NIL
ATPSYN-RXN (# # # # # # # # # # #)

Missing reactions: 1

DADPKIN-RXN

Evidence for , EC# EC-2.7.4.6DADPKIN-RXN

no BLAST hits found

adenine and adenosine salvage I

Total # of reactions in pathway = 2

Present reactions: 1

Reaction Protein(s)
ADENPRIBOSYLTRAN-RXN (#)

Missing reactions: 1

ADENPHOSPHOR-RXN

Evidence for adenosine phosphorylase, EC# EC-2.4.2.1ADENPHOSPHOR-RXN

no BLAST hits found

S-adenosyl-L-methionine cycle I

Total # of reactions in pathway = 5

Present reactions: 3

Reaction Protein(s)
ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN (#)
RIBOSYLHOMOCYSTEINASE-RXN (#)
SAM-PWY NIL

Missing reactions: 2

RXN-7605
HOMOCYSMET-RXN

Evidence for , EC# EC-2.1.1RXN-7605

Evidence for , EC# EC-2.1.1.14HOMOCYSMET-RXN

no BLAST hits found

N-acetylneuraminate and N-acetylmannosamine degradation

Total # of reactions in pathway = 3

Present reactions: 2

Reaction Protein(s)
NANE-RXN (#)
ACNEULY-RXN (#)

Missing reactions: 1

NANK-RXN

Evidence for , EC# EC-2.7.1.60NANK-RXN

no BLAST hits found

N-acetylglucosamine degradation II

Total # of reactions in pathway = 4

Present reactions: 3

Reaction Protein(s)
GLUCOSAMINE-6-P-DEAMIN-RXN (#)
NAG6PDEACET-RXN (#)
GLUAMCAT-PWY NIL

Missing reactions: 1

N-ACETYLGLUCOSAMINE-KINASE-RXN

Evidence for , EC# EC-2.7.1.59N-ACETYLGLUCOSAMINE-KINASE-RXN

no BLAST hits found

6-hydroxymethyl-dihydropterin diphosphate biosynthesis I

Total # of reactions in pathway = 5

Present reactions: 3

Reaction Protein(s)
H2PTERIDINEPYROPHOSPHOKIN-RXN (#)
H2NEOPTERINALDOL-RXN (#)
GTP-CYCLOHYDRO-I-RXN (#)

Missing reactions: 2

DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN
H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN

Evidence for , EC# EC-3.6.1DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN

Evidence for , EC# EC-3.6.1H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN

no BLAST hits found

5-aminoimidazole ribonucleotide biosynthesis II

Total # of reactions in pathway = 5

Present reactions: 4

Reaction Protein(s)
PRPPAMIDOTRANS-RXN (#)
GLYRIBONUCSYN-RXN (#)
FGAMSYN-RXN (#)
AIRS-RXN (#)

Missing reactions: 1

GARTRANSFORMYL2-RXN

Evidence for , EC# EC-2.1.2GARTRANSFORMYL2-RXN

no BLAST hits found

β-D-glucuronide and D-glucuronate degradation

Total # of reactions in pathway = 5

Present reactions: 4

Reaction Protein(s)
MANNONDEHYDRAT-RXN (# #)
DEOXYGLUCONOKIN-RXN (# # #)
MANNONOXIDOREDUCT-RXN (#)
GLUCUROISOM-RXN (# #)

Missing reactions: 1

BETA-GLUCURONID-RXN

Evidence for , EC# EC-3.2.1.31BETA-GLUCURONID-RXN

no BLAST hits found