#NEXUS [written Sun Sep 10 21:40:59 CEST 2017 by Mesquite version 3.2 (build 801) at MacBook-Pro-44.local/192.168.1.26] BEGIN TAXA; TITLE Chelonioids; DIMENSIONS NTAX=27; TAXLABELS 'Hypothetical_outgroup' Plesiochelyidae Xinjiangchelys Sinemydidae Chelydridae Chelomacryptodira 'Toxochelys_spp' 'Ctenochelys_spp' 'Euclastes_spp' 'Puppigerus_spp' 'Chelonia_mydas' 'Bouliachelys_suteri' 'Notochelone_costata' 'Santanachelys_gaffneyi' 'Desmatochelys_lowi' 'Desmatochelys_padillai' 'Chelosphargis_advena' 'Protostega_spp' 'Corsochelys_haliniches' 'Mesodermochelys_undulatus' 'Dermochelys_coriacea' 'Ocepechelon_bouyai' 'Rhinochelys_pulchriceps' 'Rhinochelys_nammourensis' 'Rhinochelys_amaberti' 'Rhinochelys_elegans' 'GS63_GS67' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=104; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3"; CHARSTATELABELS 1 _Cranial_scute_sulci_on_dermal_roofing_elements, 2 _Nasal, 3 _Prefrontals, 4 ' Prefrontal-Postorbital contact', 5 _Orbit_orientation, 6 _Processus_inferior_parietalis, 7 ' Parietal-Squamosal contact', 8 _Posterior_temporal_emargination, 9 ' Jugal-Quadrate contact', 10 _Medial_process_of_Jugal_beneath_orbit, 11 ' Jugal-Pterygoid contact', 12 _Ventral_cheek_emargination, 13 _Premaxilla, 14 _Foramen_praepalatinum, 15 _Upper_triturating_surface, 16 _Upper_triturating_surface, 17 _Vomers, 18 ' Vomer-Palatine contact anterior to internal nare (apertura narium interna)', 19 _Lingual_ridge_of_maxilla, 20 ' Palatines and Vomer-Pterygoid contact', 21 _Foramen_palatinum_posterius, 22 _Processus_pterygoideus_externus, 23 _Pterygoids, 24 _Pterygoid, 25 _Pterygoids, 26 _Processus_trochlearis_oticus, 27 _Processus_trochlearis_oticus, 28 _Crista_supraoccipitalis, 29 _Foramina_anteriora_canalium_carotici_interni, 30 ' Internal carotid artery (posterior to junction with palatine artery)', 31 _Ventral_surface_of_basisphenoid, 32 _Basipterygoid_processes_of_basisphenoid, 33 _Dorsum_sellae, 34 _Rostrum_basisphenoidale, 35 _Rostrum_basisphenoidale, 36 _Junction_of_palatine_artery_and_internal_carotid_artery, 37 _Foramen_caroticum_laterale, 38 _Foramen_caroticum_laterale, 39 _Mandible, 40 _Dentary, 41 _Symphyseal_ridge_of_dentary, 42 _Lingual_ridge_of_dentary, 43 ' Dentary expanded posteriorly, almost reaching articular surface', 44 _Splenial, 45 _Transverse_process_of_cervicals, 46 _Shape_of_central_articulation_of_posterior_cervicals, 47 _Ventral_keel_on_posterior_cervical_centra, 48 _Cervical_central_articulations, 49 _Biconvex_anterior_cervical_centrum, 50 _Biconvex_anterior_cervical_centrum, 51 _8th_cervical, 52 _8th_cervical_centrum, 53 _Double_cervical_articulation_between_7th_and_8th_cervicals, 54 ' 1st thoracic vertebra, anterior articulation', 55 _1st_thoracic_rib, 56 _10th_thoracic_rib, 57 _Chevrons, 58 _Anterior_part_of_tail, 59 _Posterior_part_of_tail, 60 _Coracoid, 61 ' Scapular angle, between scapular prong and acromion', 62 ' Lateral process of pubis (pectineal process)', 63 _Thyroid_fenestra, 64 _Lateral_process_of_ischium_or_metischial_process, 65 _Large_pelvis_approaching_coracoid, 66 _Humerus, 67 Lateral_process_of_humerus, 68 _Proximal_articular_surface_of_humerus, 69 Scar_for_Musculus_latissimus_dorsi_and_Musculus_teres_major, 70 ' Lateral process of humerus V-shaped', 71 _Expansion_of_lateral_process_of_humerus_limited_to_anterior_surface_of_shaft, 72 _Medial_concavity_of_lateral_process_of_humerus, 73 _Prominent_anterior_projection_of_lateral_process_of_humerus, 74 _Ulna_radius_contact_through_rugosity_and_ridge, 75 _Radius_curves_towards_anterior, 76 _Carpal_and_tarsal_elements, 77 _3rd_to_5th_digits_modified_into_paddle_with_rigid_articulations, 78 _1st_and_2nd_digits_modified_into_paddle_with_rigid_articulations, 79 _Femoral_trochanters, 80 _Scute_sulci_on_carapace, 81 _Posterior_nuchal_fontanelles, 82 _Cervical_scute, 83 _1st_vertebral, 84 _Thick_neurals_with_median_keel, 85 _Neural_number, 86 _Neural_shape, 87 _Neural_reduction, 88 _Suprapygals, 89 _Pleural_reduction, 90 _9th_pleural_plate, 91 _Plastral_scute_sulci, 92 _Axillary_buttress, 93 _Inguinal_buttress, 94 _Femoroanal_anal_sulcus, 95 _Plastral_index, 96 _Plastron, 97 ' Plastral fontanelles between hyo- and hypoplastra', 98 _Epiplastra, 99 _Entoplastron_tightly_sutured_with_hyoplastron, 100 ' Epi- and entoplastron', 101 _Entoplastron, 102 _Xiphiplastra, 103 _Medial_contact_of_xiphiplastra, 104 _Short_xiphiplastra_with_lateral_curvature ; MATRIX 'Hypothetical_outgroup' 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Plesiochelyidae 00111111011100000011100000000100100(0 1)0000100010000-000000?00000100?00000000000000000000000101100000000000 Xinjiangchelys ????01?2????????????????0001?100???0??0000??10000-1000000110001000000000000?000000(0 1)000000100011000000000 Sinemydidae 1(0 1)(0 1)111120001000?00000000000101?00?1000000101000111(1 2)00001011000100(0 1)00000000000001(0 1)(0 1)10(0 1)(0 2)0(0 1)(0 1)0(0 1)001(1 2)0(0 1)1(0 1)00100 Chelydridae 0110111200010000000000000001020000010000010111111111110(0 1)01(1 2)000(0 1)000000000000000000000000001000(0 1)(1 2)011100100 Chelomacryptodira (0 1)11(0 1)(0 1)11(0 2)0(0 1)(0 1)(0 1)00(0 1)(0 1)000(0 1)(0 1)00000010(1 2)000001(0 1)0(0 1)(0 1)(0 1 2)(0 1)(0 1)111(0 1)11(0 1)(1 2 3)111(0 1)1112(0 1)00(0 1)00(0 1)(0 1)0(0 1)000000000(0 1)(0 1)00(0 1)(0 1)00(0 1)(0 1)00(0 1)(0 1)(0 1)0(0 1 2)0(0 1)(0 1)000(0 1)(0 1)0 'Toxochelys_spp' ?111100100010110010000000001121010010000(0 1)1011111111101??1121001001100000010110001100100011?00?2011100100 'Ctenochelys_spp' ?111100000010111010000100001121111010000110111111110011011210010011000000101100011?1110011?00?2011100100 'Euclastes_spp' 01111000000001111100201000011211110110100101???????????????000000?????00010???00???0???????00?2011100110 'Puppigerus_spp' 011100000000011111002010000112111101101011011111111111101121101101210100010111100100100001000?1011100100 'Chelonia_mydas' 01110000000001111100201000011211110111002001111111111110112110110121110001011110011010001100010011100110 'Bouliachelys_suteri' ?01000?0011011100011100000011?10110?0000??????????1101?????????????????????????????????????????0???0???? 'Notochelone_costata' 0010001011100101001110010001100011010000110110?????????????11???01210011001111?00?01020011100?001110?111 'Santanachelys_gaffneyi' 0001001011110110000110010001100011010000110110011010000?11?1110?01210010001110?00101020111000?0011101100 'Desmatochelys_lowi' 00010011?1100101001110011101100011010000110110011010001????1110101210011001111100110020111100?0021101?1? 'Desmatochelys_padillai' 00010?1?11100??0???1101000?1?200??????00??0110111111011????11?????21?001011111??0??0{0 1}20????????????????? 'Chelosphargis_advena' 00000?10?11?0101001??001??0110001101000011??1001???????????11???012110110??????00?01020111100?0111101111 'Protostega_spp' 1110000011101101?0112101110110001101000001011001101000101121110111211011001111110??1120120100?0111111111 'Corsochelys_haliniches' 1??0?012011??????????000001112001-1110??????10000-??00?????1100?01210?0000011?110010020011100?002110?110 'Mesodermochelys_undulatus'???????????????????????0?010??????????002011100111100010112111010121000010?111110??0021111100?0021101110 'Dermochelys_coriacea' 11100000011111111(0 1)002100001012001-1111010111110111100000112111010131100010011111------2-3-1---002110-110 'Ocepechelon_bouyai' 100111000110010000012100001?1200010????-???????????????????????????????????????????????????????????????? 'Rhinochelys_pulchriceps' 00010?1?01?00?0010010?0000????00???????????????????????????????????????????????????????????????????????? 'Rhinochelys_nammourensis' ?0010?1{1 2}0??????????????????1??????????????????1???????1????11????13??01???1111?10?01020-11?-??011???1111 'Rhinochelys_amaberti' 00010?100??00??????????0?0????00??????00{0 1}1?????????????????????????????????????????????????????????????? 'Rhinochelys_elegans' 00010???0??00?00?001??0?0??????0???????????????????????????????????????????????????????????????????????? 'GS63_GS67' ?00?0??????????0??1????????????????????????????????????????????????????????????????????????????????????? ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 104; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 104; END; BEGIN NOTES; TEXT TAXON = 23 CHARACTER = 6 TEXT = 'Scored 0 for this character following Cadena&parham(2015): Rhinochelys pulchriceps shows state 1 of the character 14 which is a norrow processus inferior parietalis'; TEXT TAXON = 25 CHARACTER = 7 TEXT = 'Skull not complete, but the postorbital separates the parietal from the squamosal'; TEXT TAXON = 16 CHARACTER = 8 TEXT = 'The temporal emargination is mentioned ''moderate'' in the Cadena & Parham (2015) paper, but the specimens (pictures) are also broken so we prefer not to score this character'; TEXT TAXON = 23 CHARACTER = 8 TEXT = Skull_is_not_preserved_enough; TEXT TAXON = 24 CHARACTER = 8 TEXT = 'According to Tong et al (2006) the temporal emargination of R. nammourensis is deeper than R. pulchriceps'; TEXT TAXON = 16 CHARACTER = 10 TEXT = 'Same scoring as character 22 in Cadena & Parham (2015)'; TEXT TAXON = 23 CHARACTER = 10 TEXT = 'Same scoring as for character 22 in Cadena&parham(2015)'; TEXT TAXON = 16 CHARACTER = 11 TEXT = 'Same scoring as character 22 in Cadena & Parham (2015)'; TEXT TAXON = 23 CHARACTER = 11 TEXT = 'The jugal could possibly contact the pterygoid but it is not clear on Owen''s (1851) drawings and the RBINS specimens are not complete enough'; TEXT TAXON = 26 CHARACTER = 11 TEXT = 'According to Collins (1970), jugal doesn''t seem to meet the pterygoid but the skul is not complete either'; TEXT TAXON = 16 CHARACTER = 12 TEXT = 'According to Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 14 TEXT = Upper_part_of_palate_not_preserved; TEXT TAXON = 16 CHARACTER = 15 TEXT = 'Same scoring as character 39 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 16 TEXT = 'Same scoring as character 51 in Cadena & Parham (2015)'; TEXT TAXON = 27 CHARACTER = 16 TEXT = 'Because Pmx goes far posteriorly thus excluding the vomer from the triturationg surface^n^n'; TEXT TAXON = 16 CHARACTER = 17 TEXT = Vomer_not_complete; TEXT TAXON = 23 CHARACTER = 17 TEXT = 'The vomer looks like a narrow sagittal pillar like Dermochelys & Santanachelys --> Which one to choose?'; TEXT TAXON = 16 CHARACTER = 18 TEXT = 'Vomer not complete, same scoring as character 41 in Cadena & Parham (2015)'; TEXT TAXON = 23 CHARACTER = 18 TEXT = There_is_a_vomer_palatine_contact_but_it_is_posterior_to_the_inapertura_narium_interna; TEXT TAXON = 26 CHARACTER = 18 TEXT = There_is_a_vomer_palatine_contact_but_it_is_posterior_to_the_inapertura_narium_interna; TEXT TAXON = 27 CHARACTER = 18 TEXT = Would_probably_be_0&1_but_palatines_are_not_preserved; TEXT TAXON = 16 CHARACTER = 19 TEXT = Maxilla_obstructed; TEXT TAXON = 16 CHARACTER = 22 TEXT = 'Same scoring as character 69 in Cadena & Parham (2015)'; TEXT TAXON = 23 CHARACTER = 22 TEXT = 'According to Cadena&Parham(2015) character 69'; TEXT TAXON = 24 CHARACTER = 22 TEXT = 'According to Cadena&Parham(2015) character 69'; TEXT TAXON = 16 CHARACTER = 23 TEXT = 'Same scoring as character 74 in Cadena & Parham (2015)'; TEXT TAXON = 23 CHARACTER = 23 TEXT = There_is_no_crest_on_the_pterygoids_but_there_is_a_small_hollow._Could_it_be_considered_a_ridge?; TEXT TAXON = 16 CHARACTER = 24 TEXT = 'Character 75 in Cadena & Parham (2015) states that the pterygoid extends to the mandibular condyle but it does not seem to participate in the condyle'; TEXT TAXON = 23 CHARACTER = 24 TEXT = 'In Cadena&Parham(2015) it is scored is only touching the outline of the condyle (thus not forming part of it). The RBINS specimens are not preserved enough for this scoring, And Literature (Collins1970,Owens1851) does not indicate participation of the pterygoids to mandibular condyle.'; TEXT TAXON = 16 CHARACTER = 26 TEXT = 'Same scoring as character 57 in Cadena & Parham (2015)'; TEXT TAXON = 23 CHARACTER = 27 TEXT = Not_preserved; TEXT TAXON = 23 CHARACTER = 28 TEXT = 'According to Cadena&Parham(2015) and from literature (pictures from Collins 1970)'; TEXT TAXON = 23 CHARACTER = 29 TEXT = No_dorsal_view_of_the_basisphenoid_available; TEXT TAXON = 16 CHARACTER = 30 TEXT = 'Same scoring as character 99 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 31 TEXT = 'Same scoring as character 88 in Cadena & Parham (2015)'; TEXT TAXON = 26 CHARACTER = 32 TEXT = 'Based on Collins (1970) drawing'; TEXT TAXON = 16 CHARACTER = 39 TEXT = 'Same scoring as character 110 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 43 TEXT = 'Same scoring as character 113 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 45 TEXT = 'Based on Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 46 TEXT = 'Same scoring as character 203 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 47 TEXT = 'Same scoring as character 187 in Cadena & Parham (2015)'; TEXT TAXON = 24 CHARACTER = 47 TEXT = 'See Tong et al (2006): 5th to 7th cervical have slight ventral keel'; TEXT TAXON = 16 CHARACTER = 48 TEXT = 'Same scoring as character 190 in Cadena & Parham (2015)^n'; TEXT TAXON = 16 CHARACTER = 49 TEXT = 'Based on characters 192&193 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 50 TEXT = 'Based on characters 192&193 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 51 TEXT = 'Based on Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 52 TEXT = 'Same scoring as character 188 in Cadena & Parham (2015)^n'; TEXT TAXON = 16 CHARACTER = 53 TEXT = 'Same scoring as character 198 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 54 TEXT = 'Based on scoring of character 207 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 55 TEXT = 'Based on Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 60 TEXT = 'Same scoring as character 220 in Cadena & Parham (2015)'; TEXT TAXON = 24 CHARACTER = 60 TEXT = 'See Tong et al (2006)'; TEXT TAXON = 16 CHARACTER = 61 TEXT = 'Same scoring as character 219 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 67 TEXT = 'Same scoring as character 237 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 68 TEXT = 'Same scoring as character 236 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 70 TEXT = 'Based on character 239 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 71 TEXT = 'Same scoring as character 240 in Cadena & Parham (2015)'; TEXT TAXON = 24 CHARACTER = 71 TEXT = 'According to Tong et al (2006) on juvenile specimen'; TEXT TAXON = 16 CHARACTER = 72 TEXT = 'Same scoring as character 241 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 73 TEXT = 'Same scoring as character 242 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 74 TEXT = 'Same scoring as character 246 in Cadena & Parham (2015)'; TEXT TAXON = 24 CHARACTER = 74 TEXT = 'Same scoring as character 246 from Cadena&Parham(2015)s'; TEXT TAXON = 16 CHARACTER = 75 TEXT = 'Same scoring as character 247 in Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 76 TEXT = 'Same scoring as character 253 in Cadena & Parham (2015)'; TEXT TAXON = 24 CHARACTER = 76 TEXT = 'In Tong et al (2006) they give information on the carpals only'; TEXT TAXON = 16 CHARACTER = 77 TEXT = 'Based on character 249 in Cadena & Parham (2015)'; TEXT TAXON = 24 CHARACTER = 77 TEXT = 'According to Tong et al (2006)^n^n'; TEXT TAXON = 16 CHARACTER = 78 TEXT = 'Based on character 249 in Cadena & Parham (2015) '; TEXT TAXON = 24 CHARACTER = 78 TEXT = 'According to Tong et al (2006)^n^n'; TEXT TAXON = 16 CHARACTER = 81 TEXT = 'Same scoring as character 123 in Cadena & Parham (2015)'; TEXT TAXON = 24 CHARACTER = 81 TEXT = 'character 123 in Cadean&Parham(2015) scores 0 (so absence of posterior nuchal fontanelles) ^n^n'; TEXT TAXON = 24 CHARACTER = 83 TEXT = 'Based on Tong et al (2006) '; TEXT TAXON = 16 CHARACTER = 84 TEXT = 'According to Cadena & Parham (2015)'; TEXT TAXON = 24 CHARACTER = 84 TEXT = 'According to Tong et al (2006) the neural has a median keel'; TEXT TAXON = 16 CHARACTER = 85 TEXT = 'According to Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 86 TEXT = 'According to Cadena & Parham (2015)'; TEXT TAXON = 16 CHARACTER = 87 TEXT = 'Based on Cadena & Parham (2015)'; TEXT TAXON = 24 CHARACTER = 87 TEXT = 'All neural present but 8th is shorter according to Tong et al (2006) '; TEXT TAXON = 16 CHARACTER = 89 TEXT = Carapace_incomplete; TEXT TAXON = 24 CHARACTER = 89 TEXT = 'Based on Tong et al (2006) pictures and reconstitution'; TEXT TAXON = 16 CHARACTER = 90 TEXT = Carapace_incomplete; TEXT TAXON = 24 CHARACTER = 90 TEXT = 'Based on Tong et al (2006) reconstitution'; TEXT TAXON = 24 CHARACTER = 95 TEXT = 'According to Tong et al (2006) '; TEXT TAXON = 24 CHARACTER = 96 TEXT = 'According to Tong et al (2006) '; TEXT TAXON = 24 CHARACTER = 98 TEXT = 'Epiplastron not visible (Tong et al 2006)'; TEXT TAXON = 24 CHARACTER = 99 TEXT = 'Entoplastron not visible (Tong et al 2006)'; TEXT TAXON = 24 CHARACTER = 100 TEXT = 'Epi and entoplastron not visible (Tong et al 2006) '; TEXT TAXON = 24 CHARACTER = 101 TEXT = 'Entoplastron not visible (Tong et al 2006)'; TEXT TAXON = 24 CHARACTER = 102 TEXT = From_Tong_et_a_2006; TEXT TAXON = 24 CHARACTER = 103 TEXT = 'From Tong et al (2006)'; END; BEGIN TREES; Title 'Trees from "Bardet_Matrix_Reduced_BL.tre"'; ID 015e6d4f25392; LINK Taxa = Chelonioids; TRANSLATE [0] 1 'Hypothetical_outgroup', [1] 2 Plesiochelyidae, [2] 3 Xinjiangchelys, [3] 4 Sinemydidae, [4] 5 Chelydridae, [5] 6 Chelomacryptodira, [6] 7 'Toxochelys_spp', [7] 8 'Ctenochelys_spp', [8] 9 'Euclastes_spp', [9] 10 'Puppigerus_spp', [10] 11 'Chelonia_mydas', [11] 12 'Bouliachelys_suteri', [12] 13 'Notochelone_costata', [13] 14 'Santanachelys_gaffneyi', [14] 15 'Desmatochelys_lowi', [15] 16 'Desmatochelys_padillai', [16] 17 'Chelosphargis_advena', [17] 18 'Protostega_spp', [18] 19 'Corsochelys_haliniches', [19] 20 'Mesodermochelys_undulatus', [20] 21 'Dermochelys_coriacea', [21] 22 'Ocepechelon_bouyai', [22] 23 'Rhinochelys_pulchriceps', [23] 24 'Rhinochelys_nammourensis', [24] 25 'Rhinochelys_amaberti', [25] 26 'Rhinochelys_elegans', [26] 27 'GS63_GS67'; TREE Imported_tree_1 = (1:0.0,(2:9,(3:1,(4:5,((5:2,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,((15:4,24:3):3,(17:0.0,18:13):2):3):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,25:0.0):0.0,26:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):3,6:1):9):9):9):12):0.0; TREE Imported_tree_2 = (1:0.0,(2:9,(3:1,(4:6,(5:1,(6:3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,(15:5,(17:0.0,(18:6,24:5):7):3):2):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,25:0.0):0.0,26:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):16):8):8):9):9):12):0.0; TREE Imported_tree_3 = (1:0.0,(2:9,(3:1,(4:6,(5:1,(6:3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,(((((((13:2,((15:4,24:3):3,(17:0.0,18:13):2):3):1,27:0.0):3,14:7):7,16:3):1,(23:0.0,25:0.0):2):1,22:7):0.0,26:0.0):4):8,(19:6,(20:2,21:7):5):12):17):5):10):4):16):8):8):9):9):12):0.0; TREE Imported_tree_4 = (1:0.0,(2:9,(3:1,(4:6,(5:1,(6:3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,(((((((13:3,(15:3,((17:1,18:12):2,24:3):4):3):1,27:0.0):2,14:7):7,16:3):1,(23:0.0,25:0.0):2):1,22:7):0.0,26:0.0):4):8,(19:6,(20:2,21:7):5):12):17):5):10):4):16):8):8):9):9):12):0.0; TREE Imported_tree_5 = (1:0.0,(2:9,(3:1,(4:5,((5:2,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,(15:5,(17:0.0,(18:6,24:5):7):3):2):1,27:0.0):3,14:7):7,16:3):1,25:0.0):0.0,23:2):0.0,26:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):3,6:1):9):9):9):12):0.0; TREE Imported_tree_6 = (1:0.0,(2:9,(3:1,(4:6,(5:1,(6:3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,((15:4,24:3):3,(17:0.0,18:13):2):3):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,25:0.0):0.0,26:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):16):8):8):9):9):12):0.0; TREE Imported_tree_7 = (1:0.0,(2:9,(3:1,(4:6,((5:1,6:2):3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,((15:4,24:3):3,(17:0.0,18:13):2):3):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,25:0.0):0.0,26:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):8):9):9):12):0.0; TREE Imported_tree_8 = (1:0.0,(2:9,(3:1,(4:5,((5:2,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:3,(15:3,((17:1,18:12):2,24:3):4):3):1,27:0.0):2,14:7):7,16:3):1,23:2):0.0,25:0.0):0.0,26:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):3,6:1):9):9):9):12):0.0; TREE Imported_tree_9 = (1:0.0,(2:9,(3:1,(4:5,((5:2,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,((15:4,24:3):3,(17:0.0,18:13):2):3):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,25:0.0):1,22:7):0.0,26:0.0):4):8,(19:6,(20:2,21:7):5):12):17):5):10):4):22):3,6:1):9):9):9):12):0.0; TREE Imported_tree_10 = (1:0.0,(2:9,(3:1,(4:6,((5:1,6:2):3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,(15:5,(17:0.0,(18:6,24:5):7):3):2):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,25:0.0):0.0,26:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):8):9):9):12):0.0; TREE Imported_tree_11 = (1:0.0,(2:9,(3:1,(4:6,(5:1,(6:3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:3,(15:3,((17:1,18:12):2,24:3):4):3):1,27:0.0):2,14:7):7,16:3):1,23:2):0.0,25:0.0):0.0,26:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):16):8):8):9):9):12):0.0; TREE Imported_tree_12 = (1:0.0,(2:9,(3:1,(4:6,(5:1,(6:3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,(15:5,(17:0.0,(18:6,24:5):7):3):2):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,25:0.0):1,22:7):0.0,26:0.0):4):8,(19:6,(20:2,21:7):5):12):17):5):10):4):16):8):8):9):9):12):0.0; TREE Imported_tree_13 = (1:0.0,(2:9,(3:1,(4:6,((5:1,6:2):3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,(((((((13:2,((15:4,24:3):3,(17:0.0,18:13):2):3):1,27:0.0):3,14:7):7,16:3):1,(23:0.0,25:0.0):2):1,22:7):0.0,26:0.0):4):8,(19:6,(20:2,21:7):5):12):17):5):10):4):22):8):9):9):12):0.0; TREE Imported_tree_14 = (1:0.0,(2:9,(3:1,(4:6,(5:1,(6:3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((13:2,((15:4,24:3):3,(17:0.0,18:13):2):3):1,27:0.0):3,14:7):7,16:3):1,((23:0.0,25:0.0):0.0,26:0.0):2):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):16):8):8):9):9):12):0.0; TREE Imported_tree_15 = (1:0.0,(2:9,(3:1,(4:5,((5:2,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,(((((((13:3,(15:3,((17:1,18:12):2,24:3):4):3):1,27:0.0):2,14:7):7,16:3):1,(23:0.0,25:0.0):2):1,22:7):0.0,26:0.0):4):8,(19:6,(20:2,21:7):5):12):17):5):10):4):22):3,6:1):9):9):9):12):0.0; TREE Imported_tree_16 = (1:0.0,(2:9,(3:1,(4:6,((5:1,6:2):3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,(((((((13:3,(15:3,((17:1,18:12):2,24:3):4):3):1,27:0.0):2,14:7):7,16:3):1,(23:0.0,25:0.0):2):1,22:7):0.0,26:0.0):4):8,(19:6,(20:2,21:7):5):12):17):5):10):4):22):8):9):9):12):0.0; TREE Imported_tree_17 = (1:0.0,(2:9,(3:1,(4:6,(5:1,(6:3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((13:3,(15:3,((17:1,18:12):2,24:3):4):3):1,27:0.0):2,14:7):7,16:3):1,((23:0.0,25:0.0):0.0,26:0.0):2):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):16):8):8):9):9):12):0.0; TREE Imported_tree_18 = (1:0.0,(2:9,(3:1,(4:5,((5:2,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,(15:5,(17:0.0,(18:6,24:5):7):3):2):1,27:0.0):3,14:7):7,16:3):1,25:0.0):0.0,23:2):1,22:7):0.0,26:0.0):4):8,(19:6,(20:2,21:7):5):12):17):5):10):4):22):3,6:1):9):9):9):12):0.0; TREE Imported_tree_19 = (1:0.0,(2:9,(3:1,(4:6,((5:1,6:2):3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:3,(15:3,((17:1,18:12):2,24:3):4):3):1,27:0.0):2,14:7):7,16:3):1,23:2):0.0,25:0.0):0.0,26:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):8):9):9):12):0.0; TREE Imported_tree_20 = (1:0.0,(2:9,(3:1,(4:5,((5:2,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,((15:4,24:3):3,(17:0.0,18:13):2):3):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,26:0.0):0.0,25:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):3,6:1):9):9):9):12):0.0; TREE Imported_tree_21 = (1:0.0,(2:9,(3:1,(4:6,((5:1,6:2):3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,(15:5,(17:0.0,(18:6,24:5):7):3):2):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,25:0.0):1,22:7):0.0,26:0.0):4):8,(19:6,(20:2,21:7):5):12):17):5):10):4):22):8):9):9):12):0.0; TREE Imported_tree_22 = (1:0.0,(2:9,(3:1,(4:6,(5:1,(6:3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,(15:5,(17:0.0,(18:6,24:5):7):3):2):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,26:0.0):0.0,25:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):16):8):8):9):9):12):0.0; TREE Imported_tree_23 = (1:0.0,(2:9,(3:1,(4:6,((5:1,6:2):3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((13:2,((15:4,24:3):3,(17:0.0,18:13):2):3):1,27:0.0):3,14:7):7,16:3):1,((23:0.0,25:0.0):0.0,26:0.0):2):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):8):9):9):12):0.0; TREE Imported_tree_24 = (1:0.0,(2:9,(3:1,(4:5,((5:2,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((13:3,(15:3,((17:1,18:12):2,24:3):4):3):1,27:0.0):2,14:7):7,16:3):1,((23:0.0,25:0.0):0.0,26:0.0):2):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):3,6:1):9):9):9):12):0.0; TREE Imported_tree_25 = (1:0.0,(2:9,(3:1,(4:6,((5:1,6:2):3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((13:3,(15:3,((17:1,18:12):2,24:3):4):3):1,27:0.0):2,14:7):7,16:3):1,((23:0.0,25:0.0):0.0,26:0.0):2):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):8):9):9):12):0.0; TREE Imported_tree_26 = (1:0.0,(2:9,(3:1,(4:5,((5:2,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,(((((((13:2,(15:5,(17:0.0,(18:6,24:5):7):3):2):1,27:0.0):3,14:7):7,16:3):1,25:0.0):0.0,(23:0.0,26:0.0):2):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):3,6:1):9):9):9):12):0.0; TREE Imported_tree_27 = (1:0.0,(2:9,(3:1,(4:6,((5:1,6:2):3,(7:1,(8:3,(9:3,((10:4,11:5):3,((12:2,((((((((13:2,(15:5,(17:0.0,(18:6,24:5):7):3):2):1,27:0.0):3,14:7):7,16:3):1,23:2):0.0,26:0.0):0.0,25:0.0):2,22:6):4):8,(19:6,(20:2,21:7):5):11):18):5):10):4):22):8):9):9):12):0.0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1505072464751; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4518858773812961810; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 27 15 16 17 18 19 20 21 22 23 24 26; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6761527781176110467; mqVersion 320; checksumv 0 3 2562475978 null getNumChars 104 numChars 104 getNumTaxa 27 numTaxa 27 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 6291.0 sumSquares -1.8446744073709552E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 182; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 654; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6761527781176110467 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 60; setFontIncAnnot 0; setFontIncExp 0; setSize 1098 542; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; endTell; end;