Supplementary Table S2: SNP positions used for recalibration with GATK. Variant position genome start Variant position genome stop Var. type Number WT base Var. base Region Gene ID Gene Name Gene start Gene stop Gene length Dir. WT AA Codon nr. Codon nr. E. coli Var. AA AA change Codon change Variant position gene start Variant position gene stop Antibiotic Reference PMID High Confidence SNP 6575 6575 SNP 1 c t coding Rv0005 gyrB 5240 7267 2028 + Arg 446 - Cys Arg446Cys cgt/tgt 1336 1336 fluoroquinolones (FQ) 19470506 6620 6620 SNP 1 g c coding Rv0005 gyrB 5240 7267 2028 + Asp 461 - His Asp461His gac/cac 1381 1381 fluoroquinolones (FQ) 24055765 yes 6620 6620 SNP 1 g a coding Rv0005 gyrB 5240 7267 2028 + Asp 461 - Asn Asp461Asn gac/aac 1381 1381 fluoroquinolones (FQ) 19721073 yes 6621 6621 SNP 1 a c coding Rv0005 gyrB 5240 7267 2028 + Asp 461 - Ala Asp461Ala gac/gcc 1382 1382 fluoroquinolones (FQ) 24055765 yes 6734 6734 SNP 1 a g coding Rv0005 gyrB 5240 7267 2028 + Asn 499 - Asp Asn499Asp aac/gac 1495 1495 fluoroquinolones (FQ) 17412727 yes 6735 6735 SNP 1 a c coding Rv0005 gyrB 5240 7267 2028 + Asn 499 - Thr Asn499Thr aac/acc 1496 1496 fluoroquinolones (FQ) 24055765 yes 6736 6736 SNP 1 c g coding Rv0005 gyrB 5240 7267 2028 + Asn 499 - Lys Asn499Lys aac/aag 1497 1497 fluoroquinolones (FQ) 24055765 yes 6737 6737 SNP 1 a c coding Rv0005 gyrB 5240 7267 2028 + Thr 500 - Pro Thr500Pro acc/ccc 1498 1498 fluoroquinolones (FQ) 24055765 yes 6738 6738 SNP 1 c a coding Rv0005 gyrB 5240 7267 2028 + Thr 500 - Asn Thr500Asn acc/aac 1499 1499 fluoroquinolones (FQ) 24055765 yes 6741 6741 SNP 1 a t coding Rv0005 gyrB 5240 7267 2028 + Glu 501 - Val Glu501Val gaa/gta 1502 1502 fluoroquinolones (FQ) 19721073 yes 6742 6742 SNP 1 a t coding Rv0005 gyrB 5240 7267 2028 + Glu 501 - Asp Glu501Asp gaa/gat 1503 1503 fluoroquinolones (FQ) 19721073 yes 6749 6749 SNP 1 g a coding Rv0005 gyrB 5240 7267 2028 + Ala 504 - Thr Ala504Thr gcg/acg 1510 1510 fluoroquinolones (FQ) 19470506 6750 6750 SNP 1 c t coding Rv0005 gyrB 5240 7267 2028 + Ala 504 - Val Ala504Val gcg/gtg 1511 1511 fluoroquinolones (FQ) 24055765 yes 7563 7563 SNP 1 g t coding Rv0006 gyrA 7302 9818 2517 + Gly 88 - Cys Gly88Cys ggc/tgc 262 262 fluoroquinolones (FQ) 24055765 yes 7564 7564 SNP 1 g c coding Rv0006 gyrA 7302 9818 2517 + Gly 88 - Ala Gly88Ala ggc/gcc 263 263 fluoroquinolones (FQ) 24055765 yes 7566 7566 SNP 1 g a coding Rv0006 gyrA 7302 9818 2517 + Asp 89 - Asn Asp89Asn gac/aac 265 265 fluoroquinolones (FQ) 19687244 7570 7570 SNP 1 c t coding Rv0006 gyrA 7302 9818 2517 + Ala 90 - Val Ala90Val gcg/gtg 269 269 fluoroquinolones (FQ) 21300839 yes 7572 7572 SNP 1 t c coding Rv0006 gyrA 7302 9818 2517 + Ser 91 - Pro Ser91Pro tcg/ccg 271 271 fluoroquinolones (FQ) 21562102 yes 7581 7581 SNP 1 g c coding Rv0006 gyrA 7302 9818 2517 + Asp 94 - His Asp94His gac/cac 280 280 fluoroquinolones (FQ) 21562102 yes 7581 7581 SNP 1 g a coding Rv0006 gyrA 7302 9818 2517 + Asp 94 - Asn Asp94Asn gac/aac 280 280 fluoroquinolones (FQ) 21562102 yes 7581 7581 SNP 1 g t coding Rv0006 gyrA 7302 9818 2517 + Asp 94 - Tyr Asp94Tyr gac/tac 280 280 fluoroquinolones (FQ) 21562102 yes 7582 7582 SNP 1 a g coding Rv0006 gyrA 7302 9818 2517 + Asp 94 - Gly Asp94Gly gac/ggc 281 281 fluoroquinolones (FQ) 21300839 yes 7582 7582 SNP 1 a c coding Rv0006 gyrA 7302 9818 2517 + Asp 94 - Ala Asp94Ala gac/gcc 281 281 fluoroquinolones (FQ) 21300839 yes 7582 7582 SNP 1 a t coding Rv0006 gyrA 7302 9818 2517 + Asp 94 - Val Asp94Val gac/gtc 281 281 fluoroquinolones (FQ) 17434825 575729 575729 SNP 1 c t coding Rv0486 mshA 575348 576790 1443 + Gln 128 - STOP Gln128STOP cag/tag 382 382 ethionamide (ETH) 18651841 576164 576164 SNP 1 c t coding Rv0486 mshA 575348 576790 1443 + Arg 273 - Cys Arg273Cys cgc/tgc 817 817 ethionamide (ETH) 18651841 576242 576242 SNP 1 g t coding Rv0486 mshA 575348 576790 1443 + Gly 299 - Cys Gly299Cys ggc/tgc 895 895 ethionamide (ETH) 18651841 576338 576338 SNP 1 c t coding Rv0486 mshA 575348 576790 1443 + Gln 331 - STOP Gln331STOP cag/tag 991 991 ethionamide (ETH) 18651841 576414 576414 SNP 1 g a coding Rv0486 mshA 575348 576790 1443 + Gly 356 - Asp Gly356Asp ggc/gac 1067 1067 ethionamide (ETH) 18651841 576429 576429 SNP 1 a c coding Rv0486 mshA 575348 576790 1443 + Glu 361 - Ala Glu361Ala gag/gcg 1082 1082 ethionamide (ETH) 18651841 760314 760314 SNP 1 g t coding Rv0667 rpoB 759807 763325 3519 + Val 170 146 Phe Val170Phe gtc/ttc 508 508 rifampicin (RMP) 11136757 yes 761004 761004 SNP 1 a g coding Rv0667 rpoB 759807 763325 3519 + Thr 400 481 Ala Thr400Ala acc/gcc 1198 1198 rifampicin (RMP) 22646308 761093 761093 SNP 1 g c coding Rv0667 rpoB 759807 763325 3519 + Gln 429 510 His Gln429His cag/cac 1287 1287 rifampicin (RMP) 15184414 761095 761095 SNP 1 t c coding Rv0667 rpoB 759807 763325 3519 + Leu 430 511 Pro Leu430Pro ctg/ccg 1289 1289 rifampicin (RMP) 8027320 761095 761095 SNP 1 t g coding Rv0667 rpoB 759807 763325 3519 + Leu 430 511 Arg Leu430Arg ctg/cgg 1289 1289 rifampicin (RMP) 8027320 761098 761098 SNP 1 g t coding Rv0667 rpoB 759807 763325 3519 + Ser 431 512 Ile Ser431Ile agc/atc 1292 1292 rifampicin (RMP) 24055765 761098 761098 SNP 1 g c coding Rv0667 rpoB 759807 763325 3519 + Ser 431 512 Thr Ser431Thr agc/acc 1292 1292 rifampicin (RMP) 8027320 761100 761100 SNP 1 c a coding Rv0667 rpoB 759807 763325 3519 + Gln 432 513 Lys Gln432Lys caa/aaa 1294 1294 rifampicin (RMP) 11136757 761101 761101 SNP 1 a c coding Rv0667 rpoB 759807 763325 3519 + Gln 432 513 Pro Gln432Pro caa/cca 1295 1295 rifampicin (RMP) 9003625 761101 761101 SNP 1 a t coding Rv0667 rpoB 759807 763325 3519 + Gln 432 513 Leu Gln432Leu caa/cta 1295 1295 rifampicin (RMP) 16672384 yes 761108 761108 SNP 1 g t coding Rv0667 rpoB 759807 763325 3519 + Met 434 515 Ile Met434Ile atg/att 1302 1302 rifampicin (RMP) 15184414 761109 761109 SNP 1 g t coding Rv0667 rpoB 759807 763325 3519 + Asp 435 516 Tyr Asp435Tyr gac/tac 1303 1303 rifampicin (RMP) 11880449 yes 761110 761110 SNP 1 a g coding Rv0667 rpoB 759807 763325 3519 + Asp 435 516 Gly Asp435Gly gac/ggc 1304 1304 rifampicin (RMP) 24055765 yes 761110 761110 SNP 1 a t coding Rv0667 rpoB 759807 763325 3519 + Asp 435 516 Val Asp435Val gac/gtc 1304 1304 rifampicin (RMP) 21300839 yes 761111 761111 SNP 1 c g coding Rv0667 rpoB 759807 763325 3519 + Asp 435 516 Glu Asp435Glu gac/gag 1305 1305 rifampicin (RMP) 8027320 761117 761120 Del 3 caac c coding Rv0667 rpoB 759807 763325 3519 + Asn 438 519 - Asn438- aac/_ 1312 1314 rifampicin (RMP) 11136757 761120 761120 SNP 1 c g coding Rv0667 rpoB 759807 763325 3519 + Asn 438 519 Lys Asn438Lys aac/aag 1314 1314 rifampicin (RMP) 19721079 761128 761128 SNP 1 c t coding Rv0667 rpoB 759807 763325 3519 + Ser 441 522 Leu Ser441Leu tcg/ttg 1322 1322 rifampicin (RMP) 7759399 761128 761128 SNP 1 c g coding Rv0667 rpoB 759807 763325 3519 + Ser 441 522 Trp Ser441Trp tcg/tgg 1322 1322 rifampicin (RMP) 15814606 761139 761139 SNP 1 c a coding Rv0667 rpoB 759807 763325 3519 + His 445 526 Asn His445Asn cac/aac 1333 1333 rifampicin (RMP) 14729930 yes 761139 761139 SNP 1 c g coding Rv0667 rpoB 759807 763325 3519 + His 445 526 Asp His445Asp cac/gac 1333 1333 rifampicin (RMP) 21300839 yes 761139 761139 SNP 1 c t coding Rv0667 rpoB 759807 763325 3519 + His 445 526 Tyr His445Tyr cac/tac 1333 1333 rifampicin (RMP) 21300839 yes 761140 761140 SNP 1 a c coding Rv0667 rpoB 759807 763325 3519 + His 445 526 Pro His445Pro cac/ccc 1334 1334 rifampicin (RMP) 7759399 yes 761140 761140 SNP 1 a g coding Rv0667 rpoB 759807 763325 3519 + His 445 526 Arg His445Arg cac/cgc 1334 1334 rifampicin (RMP) 9003625 yes 761140 761140 SNP 1 a t coding Rv0667 rpoB 759807 763325 3519 + His 445 526 Leu His445Leu cac/ctc 1334 1334 rifampicin (RMP) 10921994 761141 761141 SNP 1 c a coding Rv0667 rpoB 759807 763325 3519 + His 445 526 Gln His445Gln cac/caa 1335 1335 rifampicin (RMP) 8027320 761154 761154 SNP 1 t g coding Rv0667 rpoB 759807 763325 3519 + Ser 450 531 Ala Ser450Ala tcg/gcg 1348 1348 rifampicin (RMP) 11136757 761155 761155 SNP 1 c g coding Rv0667 rpoB 759807 763325 3519 + Ser 450 531 Trp Ser450Trp tcg/tgg 1349 1349 rifampicin (RMP) 7759399 yes 761155 761155 SNP 1 c t coding Rv0667 rpoB 759807 763325 3519 + Ser 450 531 Leu Ser450Leu tcg/ttg 1349 1349 rifampicin (RMP) 21300839 yes 761161 761161 SNP 1 t c coding Rv0667 rpoB 759807 763325 3519 + Leu 452 533 Pro Leu452Pro ctg/ccg 1355 1355 rifampicin (RMP) 8913484 yes 761277 761277 SNP 1 a t coding Rv0667 rpoB 759807 763325 3519 + Ile 491 572 Phe Ile491Phe atc/ttc 1471 1471 rifampicin (RMP) 10565894 yes 781687 781687 SNP 1 a g coding Rv0682 rpsL 781560 781934 375 + Lys 43 - Arg Lys43Arg aag/agg 128 128 streptomycin (SM) 22646308 yes 781821 781821 SNP 1 a c coding Rv0682 rpsL 781560 781934 375 + Lys 88 - Gln Lys88Gln aag/cag 262 262 streptomycin (SM) 8849220 781822 781822 SNP 1 a g coding Rv0682 rpsL 781560 781934 375 + Lys 88 - Arg Lys88Arg aag/agg 263 263 streptomycin (SM) 22646308 yes 801268 801268 SNP 1 t c coding Rv0701 rplC 800809 801462 654 + Cys 154 - Arg Cys154Arg tgt/cgt 460 460 linezolid (LZD) 22371899 1472337 1472337 SNP 1 c t ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 492 492 streptomycin (SM) 9160326 1472358 1472358 SNP 1 c t ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 513 513 streptomycin (SM) 7540819 1472359 1472359 SNP 1 a c ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 514 514 streptomycin (SM) 9160326 1472362 1472362 SNP 1 c t ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 517 517 streptomycin (SM) 9160326 1472750 1472750 SNP 1 c a ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 905 905 streptomycin (SM) 7540819 1472751 1472751 SNP 1 a g ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 906 906 streptomycin (SM) 9160326 1472752 1472752 SNP 1 a t ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 907 907 streptomycin (SM) 9160326 1473246 1473246 SNP 1 a g ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 1401 1401 amikacin (AMK) kanamycin (KAN) capreomycin (CPR) 21300839 yes 1473247 1473247 SNP 1 c t ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 1402 1402 amikacin (AMK) kanamycin (KAN) capreomycin (CPR) 16048924 yes 1473329 1473329 SNP 1 g t ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 1484 1484 amikacin (AMK) kanamycin (KAN) capreomycin (CPR) 21562102 yes 1475956 1475956 SNP 1 g t ribosomal Rvnr02 rrl 1473658 1476795 3138 + - - - - --- - 2299 2299 linezolid (LZD) 18070973 1476471 1476471 SNP 1 g t ribosomal Rvnr02 rrl 1473658 1476795 3138 + - - - - --- - 2814 2814 linezolid (LZD) 18070973 1673423 1673423 SNP 1 g t intergenic Rv1483 fabG1 1673440 1674183 744 + - - - - --- - -17 -17 isoniazid (INH) 14638486 1673424 1673424 SNP 1 a g intergenic Rv1483 fabG1 1673440 1674183 744 + - - - - --- - -16 -16 isoniazid (INH) 19494067 1673425 1673425 SNP 1 c t intergenic Rv1483 fabG1 1673440 1674183 744 + - - - - --- - -15 -15 isoniazid (INH) 21300839 yes 1673432 1673432 SNP 1 t a intergenic Rv1483 fabG1 1673440 1674183 744 + - - - - --- - -8 -8 isoniazid (INH) 19494067 yes 1673432 1673432 SNP 1 t c intergenic Rv1483 fabG1 1673440 1674183 744 + - - - - --- - -8 -8 isoniazid (INH) 21300839 yes 1674481 1674481 SNP 1 t g coding Rv1484 inhA 1674202 1675011 810 + Ser 94 - Ala Ser94Ala tcg/gcg 280 280 isoniazid (INH) ethionamide (ETH) 24055765 yes 1674782 1674782 SNP 1 t c coding Rv1484 inhA 1674202 1675011 810 + Ile 194 - Thr Ile194Thr atc/acc 581 581 isoniazid (INH) ethionamide (ETH) 21110864 1833909 1833909 SNP 1 a c coding Rv1630 rpsA 1833542 1834987 1446 + Asp 123 - Ala Asp123Ala gac/gcc 368 368 pyrazinamide (PZA) 21835980 1834325 1834325 SNP 1 g a coding Rv1630 rpsA 1833542 1834987 1446 + Val 262 - Met Val262Met gtg/atg 784 784 pyrazinamide (PZA) 21835980 1834852 1834855 Del 3 cgcc c coding Rv1630 rpsA 1833542 1834987 1446 + Ala 438 - - Ala438- gcc/_ 1312 1314 pyrazinamide (PZA) 21835980 1917946 1917946 SNP 1 c t coding Rv1694 tlyA 1917940 1918746 807 + Arg 3 - STOP Arg3STOP cga/tga 7 7 capreomycin (CPR) 15673735 1917979 1917979 SNP 1 c t coding Rv1694 tlyA 1917940 1918746 807 + Arg 14 - Trp Arg14Trp cgg/tgg 40 40 capreomycin (CPR) 15673735 1917991 1917991 SNP 1 c t coding Rv1694 tlyA 1917940 1918746 807 + Arg 18 - STOP Arg18STOP cga/tga 52 52 capreomycin (CPR) 15673735 1918003 1918003 SNP 1 c t coding Rv1694 tlyA 1917940 1918746 807 + Gln 22 - STOP Gln22STOP cag/tag 64 64 capreomycin (CPR) 15673735 1918139 1918139 SNP 1 c a coding Rv1694 tlyA 1917940 1918746 807 + Ala 67 - Glu Ala67Glu gcg/gag 200 200 capreomycin (CPR) 15673735 1918144 1918144 SNP 1 a g coding Rv1694 tlyA 1917940 1918746 807 + Lys 69 - Glu Lys69Glu aaa/gaa 205 205 capreomycin (CPR) 15673735 1918211 1918211 SNP 1 c a coding Rv1694 tlyA 1917940 1918746 807 + Ala 91 - Glu Ala91Glu gca/gaa 272 272 capreomycin (CPR) 15673735 1918292 1918292 SNP 1 t c coding Rv1694 tlyA 1917940 1918746 807 + Leu 118 - Pro Leu118Pro ctg/ccg 353 353 capreomycin (CPR) 15673735 1918322 1918322 SNP 1 t a coding Rv1694 tlyA 1917940 1918746 807 + Val 128 - Glu Val128Glu gtg/gag 383 383 capreomycin (CPR) 15673735 1918388 1918388 SNP 1 t c coding Rv1694 tlyA 1917940 1918746 807 + Leu 150 - Pro Leu150Pro ctg/ccg 449 449 capreomycin (CPR) 15673735 1918487 1918487 SNP 1 c t coding Rv1694 tlyA 1917940 1918746 807 + Pro 183 - Leu Pro183Leu ccg/ctg 548 548 capreomycin (CPR) 15673735 1918489 1918489 SNP 1 c a coding Rv1694 tlyA 1917940 1918746 807 + Gln 184 - Lys Gln184Lys cag/aag 550 550 capreomycin (CPR) 15673735 1918489 1918489 SNP 1 c t coding Rv1694 tlyA 1917940 1918746 807 + Gln 184 - STOP Gln184STOP cag/tag 550 550 capreomycin (CPR) 15673735 1918494 1918494 SNP 1 t g coding Rv1694 tlyA 1917940 1918746 807 + Phe 185 - Leu Phe185Leu ttt/ttg 555 555 capreomycin (CPR) 15673735 1918651 1918651 SNP 1 g a coding Rv1694 tlyA 1917940 1918746 807 + Glu 238 - Lys Glu238Lys gag/aag 712 712 capreomycin (CPR) 15673735 2102240 2102240 SNP 1 g a coding Rv1854c ndh 2103042 2101651 1392 - Arg 268 - His Arg268His cgc/cac 803 803 isoniazid (INH) ethionamide (ETH) 11408244 2102715 2102715 SNP 1 a g coding Rv1854c ndh 2103042 2101651 1392 - Thr 110 - Ala Thr110Ala acc/gcc 328 328 isoniazid (INH) ethionamide (ETH) 11408244 2155167 2155167 SNP 1 c g coding Rv1908c katG 2156111 2153889 2223 - Ser 315 - Arg Ser315Arg agc/agg 945 945 isoniazid (INH) 16870753 2155167 2155167 SNP 1 c a coding Rv1908c katG 2156111 2153889 2223 - Ser 315 - Arg Ser315Arg agc/aga 945 945 isoniazid (INH) 17403134 2155168 2155168 SNP 1 g c coding Rv1908c katG 2156111 2153889 2223 - Ser 315 - Thr Ser315Thr agc/acc 944 944 isoniazid (INH) 8878604 yes 2155168 2155168 SNP 1 g a coding Rv1908c katG 2156111 2153889 2223 - Ser 315 - Asn Ser315Asn agc/aac 944 944 isoniazid (INH) 9210694 yes 2155168 2155168 SNP 1 g t coding Rv1908c katG 2156111 2153889 2223 - Ser 315 - Ile Ser315Ile agc/atc 944 944 isoniazid (INH) 9210694 yes 2155169 2155169 SNP 1 a g coding Rv1908c katG 2156111 2153889 2223 - Ser 315 - Gly Ser315Gly agc/ggc 943 943 isoniazid (INH) 8878604 yes 2155206 2155206 SNP 1 c g coding Rv1908c katG 2156111 2153889 2223 - Ser 302 - Arg Ser302Arg agc/agg 906 906 isoniazid (INH) 22646308 2155212 2155212 SNP 1 g c coding Rv1908c katG 2156111 2153889 2223 - Trp 300 - Cys Trp300Cys tgg/tgc 900 900 isoniazid (INH) 22646308 2155214 2155214 SNP 1 t g coding Rv1908c katG 2156111 2153889 2223 - Trp 300 - Gly Trp300Gly tgg/ggg 898 898 isoniazid (INH) 24055765 yes 2155222 2155222 SNP 1 g t coding Rv1908c katG 2156111 2153889 2223 - Gly 297 - Val Gly297Val ggc/gtc 890 890 isoniazid (INH) 11796356 2155289 2155289 SNP 1 a c coding Rv1908c katG 2156111 2153889 2223 - Thr 275 - Pro Thr275Pro acc/ccc 823 823 isoniazid (INH) 24055765 yes 2155699 2155699 SNP 1 a g coding Rv1908c katG 2156111 2153889 2223 - Asn 138 - Ser Asn138Ser aac/agc 413 413 isoniazid (INH) 16870753 2288683 2288683 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - STOP 187 - Arg STOP187Arg tga/cga 559 559 pyrazinamide (PZA) 25336456 yes 2288697 2288697 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Leu 182 - Ser Leu182Ser ttg/tcg 545 545 pyrazinamide (PZA) 25336456 yes 2288703 2288703 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Val 180 - Ala Val180Ala gtc/gcc 539 539 pyrazinamide (PZA) 25336456 yes 2288703 2288703 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 180 - Gly Val180Gly gtc/ggc 539 539 pyrazinamide (PZA) 25336456 yes 2288704 2288704 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Val 180 - Phe Val180Phe gtc/ttc 538 538 pyrazinamide (PZA) 11641519 2288718 2288718 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Met 175 - Thr Met175Thr atg/acg 524 524 pyrazinamide (PZA) 25336456 yes 2288719 2288719 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Met 175 - Val Met175Val atg/gtg 523 523 pyrazinamide (PZA) 25336456 yes 2288727 2288727 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Leu 172 - Pro Leu172Pro ctg/ccg 515 515 pyrazinamide (PZA) 22646308 2288730 2288730 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Ala 171 - Val Ala171Val gcg/gtg 512 512 pyrazinamide (PZA) 10471589 2288740 2288740 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Thr 168 - Pro Thr168Pro acc/ccc 502 502 pyrazinamide (PZA) 25336456 yes 2288752 2288752 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Ser 164 - Pro Ser164Pro tcg/ccg 490 490 pyrazinamide (PZA) 25336456 yes 2288754 2288754 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Val 163 - Ala Val163Ala gtg/gcg 488 488 pyrazinamide (PZA) 25336456 yes 2288757 2288757 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Gly 162 - Asp Gly162Asp ggt/gat 485 485 pyrazinamide (PZA) 22646308 2288761 2288761 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Ala 161 - Pro Ala161Pro gcg/ccg 481 481 pyrazinamide (PZA) 25336456 yes 2288764 2288764 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Thr 160 - Pro Thr160Pro aca/cca 478 478 pyrazinamide (PZA) 25336456 yes 2288766 2288766 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Leu 159 - Arg Leu159Arg ctg/cgg 476 476 pyrazinamide (PZA) 11641519 2288772 2288772 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Val 157 - Ala Val157Ala gtg/gcg 470 470 pyrazinamide (PZA) 25336456 yes 2288772 2288772 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 157 - Gly Val157Gly gtg/ggg 470 470 pyrazinamide (PZA) 25336456 yes 2288778 2288778 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 155 - Gly Val155Gly gtg/ggg 464 464 pyrazinamide (PZA) 25336456 yes 2288779 2288779 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Val 155 - Met Val155Met gtg/atg 463 463 pyrazinamide (PZA) 25336456 yes 2288782 2288782 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Arg 154 - Gly Arg154Gly agg/ggg 460 460 pyrazinamide (PZA) 21300839 2288805 2288805 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Ala 146 - Glu Ala146Glu gcg/gag 437 437 pyrazinamide (PZA) 22646308 2288805 2288805 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Ala 146 - Val Ala146Val gcg/gtg 437 437 pyrazinamide (PZA) 25336456 yes 2288806 2288806 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Ala 146 - Pro Ala146Pro gcg/ccg 436 436 pyrazinamide (PZA) 25336456 yes 2288806 2288806 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Ala 146 - Thr Ala146Thr gcg/acg 436 436 pyrazinamide (PZA) 11641519 2288817 2288817 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Thr 142 - Lys Thr142Lys acg/aag 425 425 pyrazinamide (PZA) 25336456 yes 2288817 2288817 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Thr 142 - Met Thr142Met acg/atg 425 425 pyrazinamide (PZA) 25336456 yes 2288818 2288818 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Thr 142 - Ala Thr142Ala acg/gcg 424 424 pyrazinamide (PZA) 25336456 yes 2288820 2288820 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Gln 141 - Pro Gln141Pro cag/ccg 422 422 pyrazinamide (PZA) 8640557 2288821 2288821 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Gln 141 - STOP Gln141STOP cag/tag 421 421 pyrazinamide (PZA) 11641519 2288823 2288823 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Arg 140 - Pro Arg140Pro cgc/ccc 419 419 pyrazinamide (PZA) 25336456 yes 2288826 2288826 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 139 - Gly Val139Gly gtg/ggg 416 416 pyrazinamide (PZA) 25336456 yes 2288827 2288827 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Val 139 - Leu Val139Leu gtg/ctg 415 415 pyrazinamide (PZA) 25336456 yes 2288828 2288828 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Cys 138 - Trp Cys138Trp tgt/tgg 414 414 pyrazinamide (PZA) 25336456 yes 2288830 2288830 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Cys 138 - Arg Cys138Arg tgt/cgt 412 412 pyrazinamide (PZA) 25336456 yes 2288832 2288832 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - His 137 - Arg His137Arg cat/cgt 410 410 pyrazinamide (PZA) 25336456 yes 2288832 2288832 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - His 137 - Pro His137Pro cat/cct 410 410 pyrazinamide (PZA) 25336456 yes 2288833 2288833 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - His 137 - Asp His137Asp cat/gat 409 409 pyrazinamide (PZA) 25336456 yes 2288836 2288836 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Asp 136 - Asn Asp136Asn gat/aat 406 406 pyrazinamide (PZA) 11641519 2288836 2288836 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Asp 136 - Tyr Asp136Tyr gat/tat 406 406 pyrazinamide (PZA) 11641519 2288838 2288838 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Thr 135 - Asn Thr135Asn acc/aac 404 404 pyrazinamide (PZA) 25336456 yes 2288839 2288839 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Thr 135 - Pro Thr135Pro acc/ccc 403 403 pyrazinamide (PZA) 25336456 yes 2288841 2288841 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Ala 134 - Val Ala134Val gcc/gtc 401 401 pyrazinamide (PZA) 25336456 yes 2288844 2288844 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Ile 133 - Thr Ile133Thr att/act 398 398 pyrazinamide (PZA) 10390239 2288847 2288847 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Gly 132 - Ala Gly132Ala ggt/gct 395 395 pyrazinamide (PZA) 25336456 yes 2288847 2288847 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Gly 132 - Asp Gly132Asp ggt/gat 395 395 pyrazinamide (PZA) 25336456 yes 2288848 2288848 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Gly 132 - Cys Gly132Cys ggt/tgt 394 394 pyrazinamide (PZA) 25336456 yes 2288848 2288848 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Gly 132 - Ser Gly132Ser ggt/agt 394 394 pyrazinamide (PZA) 9055989 2288853 2288853 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Val 130 - Ala Val130Ala gtg/gcg 389 389 pyrazinamide (PZA) 25336456 yes 2288853 2288853 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 130 - Gly Val130Gly gtg/ggg 389 389 pyrazinamide (PZA) 25336456 yes 2288857 2288857 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Asp 129 - Tyr Asp129Tyr gat/tat 385 385 pyrazinamide (PZA) 25336456 yes 2288859 2288859 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 128 - Gly Val128Gly gtc/ggc 383 383 pyrazinamide (PZA) 15616332 2288868 2288868 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 125 - Gly Val125Gly gtc/ggc 374 374 pyrazinamide (PZA) 25336456 yes 2288869 2288869 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Val 125 - Phe Val125Phe gtc/ttc 373 373 pyrazinamide (PZA) 25336456 yes 2288874 2288874 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Arg 123 - Pro Arg123Pro cgc/ccc 368 368 pyrazinamide (PZA) 25336456 yes 2288880 2288880 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Arg 121 - Pro Arg121Pro cgg/ccg 362 362 pyrazinamide (PZA) 25336456 yes 2288883 2288883 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Leu 120 - Arg Leu120Arg ctg/cgg 359 359 pyrazinamide (PZA) 21300839 2288883 2288883 SNP 1 t a coding Rv2043c pncA 2289241 2288681 561 - Leu 120 - Gln Leu120Gln ctg/cag 359 359 pyrazinamide (PZA) 25336456 yes 2288883 2288883 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Leu 120 - Pro Leu120Pro ctg/ccg 359 359 pyrazinamide (PZA) 25336456 yes 2288885 2288885 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Trp 119 - STOP Trp119STOP tgg/tga 357 357 pyrazinamide (PZA) 11641519 2288886 2288886 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Trp 119 - Ser Trp119Ser tgg/tcg 356 356 pyrazinamide (PZA) 25336456 yes 2288886 2288886 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Trp 119 - STOP Trp119STOP tgg/tag 356 356 pyrazinamide (PZA) 25336456 yes 2288887 2288887 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Trp 119 - Arg Trp119Arg tgg/cgg 355 355 pyrazinamide (PZA) 25336456 yes 2288887 2288887 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Trp 119 - Gly Trp119Gly tgg/ggg 355 355 pyrazinamide (PZA) 25336456 yes 2288895 2288895 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Leu 116 - Arg Leu116Arg ctg/cgg 347 347 pyrazinamide (PZA) 25336456 yes 2288895 2288895 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Leu 116 - Pro Leu116Pro ctg/ccg 347 347 pyrazinamide (PZA) 25336456 yes 2288902 2288902 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Thr 114 - Pro Thr114Pro acg/ccg 340 340 pyrazinamide (PZA) 9692180 2288920 2288920 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Gly 108 - Arg Gly108Arg gga/aga 322 322 pyrazinamide (PZA) 25336456 yes 2288920 2288920 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Gly 108 - Arg Gly108Arg gga/cga 322 322 pyrazinamide (PZA) 25336456 yes 2288928 2288928 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Gly 105 - Asp Gly105Asp ggc/gac 314 314 pyrazinamide (PZA) 25336456 yes 2288930 2288930 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Ser 104 - Arg Ser104Arg agc/aga 312 312 pyrazinamide (PZA) 25336456 yes 2288931 2288931 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Ser 104 - Ile Ser104Ile agc/atc 311 311 pyrazinamide (PZA) 25336456 yes 2288933 2288933 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - Tyr 103 - STOP Tyr103STOP tac/tag 309 309 pyrazinamide (PZA) 25336456 yes 2288934 2288934 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Tyr 103 - Cys Tyr103Cys tac/tgc 308 308 pyrazinamide (PZA) 25336456 yes 2288934 2288934 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Tyr 103 - Ser Tyr103Ser tac/tcc 308 308 pyrazinamide (PZA) 11641519 2288935 2288935 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Tyr 103 - Asp Tyr103Asp tac/gac 307 307 pyrazinamide (PZA) 25336456 yes 2288938 2288938 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Ala 102 - Thr Ala102Thr gcg/acg 304 304 pyrazinamide (PZA) 25336456 yes 2288944 2288944 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Thr 100 - Ala Thr100Ala acc/gcc 298 298 pyrazinamide (PZA) 25336456 yes 2288944 2288944 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Thr 100 - Pro Thr100Pro acc/ccc 298 298 pyrazinamide (PZA) 25336456 yes 2288945 2288945 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Tyr 99 - STOP Tyr99STOP tac/taa 297 297 pyrazinamide (PZA) 25336456 yes 2288952 2288952 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Gly 97 - Ala Gly97Ala ggt/gct 290 290 pyrazinamide (PZA) 25336456 yes 2288952 2288952 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Gly 97 - Asp Gly97Asp ggt/gat 290 290 pyrazinamide (PZA) 25336456 yes 2288953 2288953 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Gly 97 - Ser Gly97Ser ggt/agt 289 289 pyrazinamide (PZA) 10681313 2288954 2288954 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Lys 96 - Asn Lys96Asn aag/aac 288 288 pyrazinamide (PZA) 25336456 yes 2288955 2288955 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Lys 96 - Arg Lys96Arg aag/agg 287 287 pyrazinamide (PZA) 25336456 yes 2288955 2288955 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Lys 96 - Thr Lys96Thr aag/acg 287 287 pyrazinamide (PZA) 25336456 yes 2288956 2288956 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Lys 96 - Gln Lys96Gln aag/cag 286 286 pyrazinamide (PZA) 25336456 yes 2288956 2288956 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Lys 96 - Glu Lys96Glu aag/gag 286 286 pyrazinamide (PZA) 22646308 2288957 2288957 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - Tyr 95 - STOP Tyr95STOP tac/tag 285 285 pyrazinamide (PZA) 25336456 yes 2288960 2288960 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Phe 94 - Leu Phe94Leu ttc/tta 282 282 pyrazinamide (PZA) 25336456 yes 2288960 2288960 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - Phe 94 - Leu Phe94Leu ttc/ttg 282 282 pyrazinamide (PZA) 25336456 yes 2288961 2288961 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Phe 94 - Cys Phe94Cys ttc/tgc 281 281 pyrazinamide (PZA) 25336456 yes 2288961 2288961 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Phe 94 - Ser Phe94Ser ttc/tcc 281 281 pyrazinamide (PZA) 25336456 yes 2288962 2288962 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Phe 94 - Leu Phe94Leu ttc/ctc 280 280 pyrazinamide (PZA) 25336456 yes 2288971 2288971 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Glu 91 - STOP Glu91STOP gag/tag 271 271 pyrazinamide (PZA) 25336456 yes 2288982 2288982 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Thr 87 - Met Thr87Met acg/atg 260 260 pyrazinamide (PZA) 10390238 2288988 2288988 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Leu 85 - Arg Leu85Arg ctg/cgg 254 254 pyrazinamide (PZA) 25336456 yes 2288988 2288988 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Leu 85 - Pro Leu85Pro ctg/ccg 254 254 pyrazinamide (PZA) 9055989 2288997 2288997 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - His 82 - Arg His82Arg cat/cgt 245 245 pyrazinamide (PZA) 25336456 yes 2288998 2288998 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - His 82 - Asp His82Asp cat/gat 244 244 pyrazinamide (PZA) 25336456 yes 2289000 2289000 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Phe 81 - Cys Phe81Cys ttc/tgc 242 242 pyrazinamide (PZA) 25336456 yes 2289000 2289000 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Phe 81 - Ser Phe81Ser ttc/tcc 242 242 pyrazinamide (PZA) 25336456 yes 2289001 2289001 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Phe 81 - Val Phe81Val ttc/gtc 241 241 pyrazinamide (PZA) 25336456 yes 2289016 2289016 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Thr 76 - Pro Thr76Pro act/cct 226 226 pyrazinamide (PZA) 9056006 2289028 2289028 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Cys 72 - Arg Cys72Arg tgc/cgc 214 214 pyrazinamide (PZA) 25336456 yes 2289029 2289029 SNP 1 t a coding Rv2043c pncA 2289241 2288681 561 - His 71 - Gln His71Gln cat/caa 213 213 pyrazinamide (PZA) 25336456 yes 2289030 2289030 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - His 71 - Arg His71Arg cat/cgt 212 212 pyrazinamide (PZA) 25336456 yes 2289031 2289031 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - His 71 - Tyr His71Tyr cat/tat 211 211 pyrazinamide (PZA) 16848344 2289036 2289036 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Pro 69 - Leu Pro69Leu cca/cta 206 206 pyrazinamide (PZA) 10390238 2289038 2289038 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Trp 68 - Cys Trp68Cys tgg/tgc 204 204 pyrazinamide (PZA) 25336456 yes 2289038 2289038 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Trp 68 - Cys Trp68Cys tgg/tgt 204 204 pyrazinamide (PZA) 25336456 yes 2289039 2289039 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Trp 68 - Ser Trp68Ser tgg/tcg 203 203 pyrazinamide (PZA) 11641519 2289039 2289039 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Trp 68 - STOP Trp68STOP tgg/tag 203 203 pyrazinamide (PZA) 25336456 yes 2289040 2289040 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Trp 68 - Arg Trp68Arg tgg/cgg 202 202 pyrazinamide (PZA) 11641519 2289040 2289040 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Trp 68 - Gly Trp68Gly tgg/ggg 202 202 pyrazinamide (PZA) 11641519 2289043 2289043 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Ser 67 - Pro Ser67Pro tcg/ccg 199 199 pyrazinamide (PZA) 25336456 yes 2289049 - Ins 1 a at coding Rv2043c pncA 2289241 2288681 561 - Ser 65 - - Ser65- tcc/atcc 193 193 pyrazinamide (PZA) 22646308 2289050 2289050 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Tyr 64 - STOP Tyr64STOP tat/tag 192 192 pyrazinamide (PZA) 25336456 yes 2289052 2289052 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Tyr 64 - Asp Tyr64Asp tat/gat 190 190 pyrazinamide (PZA) 11641519 2289054 2289054 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Asp 63 - Gly Asp63Gly gac/ggc 188 188 pyrazinamide (PZA) 9692180 2289057 2289057 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Pro 62 - Leu Pro62Leu ccg/ctg 185 185 pyrazinamide (PZA) 25336456 yes 2289061 2289061 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Thr 61 - Pro Thr61Pro aca/cca 181 181 pyrazinamide (PZA) 10390238 2289068 2289068 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Phe 58 - Leu Phe58Leu ttc/tta 174 174 pyrazinamide (PZA) 25336456 yes 2289068 2289068 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - Phe 58 - Leu Phe58Leu ttc/ttg 174 174 pyrazinamide (PZA) 25336456 yes 2289070 2289070 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Phe 58 - Leu Phe58Leu ttc/ctc 172 172 pyrazinamide (PZA) 25336456 yes 2289071 2289071 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - His 57 - Gln His57Gln cac/ag 171 171 pyrazinamide (PZA) 25336456 yes 2289072 2289072 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - His 57 - Arg His57Arg cac/cgc 170 170 pyrazinamide (PZA) 25336456 yes 2289072 2289072 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - His 57 - Pro His57Pro cac/ccc 170 170 pyrazinamide (PZA) 25336456 yes 2289073 2289073 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - His 57 - Asp His57Asp cac/gac 169 169 pyrazinamide (PZA) 19861002 2289073 2289073 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - His 57 - Tyr His57Tyr cac/tac 169 169 pyrazinamide (PZA) 16848344 2289081 2289081 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - Pro 54 - Arg Pro54Arg ccg/cgg 161 161 pyrazinamide (PZA) 25336456 yes 2289081 2289081 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Pro 54 - Gln Pro54Gln ccg/cag 161 161 pyrazinamide (PZA) 25336456 yes 2289081 2289081 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Pro 54 - Leu Pro54Leu ccg/ctg 161 161 pyrazinamide (PZA) 16848344 2289082 2289082 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Pro 54 - Ser Pro54Ser ccg/tcg 160 160 pyrazinamide (PZA) 25336456 yes 2289089 2289089 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - His 51 - Gln His51Gln cac/caa 153 153 pyrazinamide (PZA) 25336456 yes 2289090 2289090 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - His 51 - Arg His51Arg cac/cgc 152 152 pyrazinamide (PZA) 25336456 yes 2289090 2289090 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - His 51 - Pro His51Pro cac/ccc 152 152 pyrazinamide (PZA) 25336456 yes 2289091 2289091 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - His 51 - Tyr His51Tyr cac/tac 151 151 pyrazinamide (PZA) 25336456 yes 2289096 2289096 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Asp 49 - Ala Asp49Ala gac/gcc 146 146 pyrazinamide (PZA) 11641519 2289096 2289096 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Asp 49 - Gly Asp49Gly gac/ggc 146 146 pyrazinamide (PZA) 10390239 2289097 2289097 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Asp 49 - Asn Asp49Asn gac/aac 145 145 pyrazinamide (PZA) 25336456 yes 2289100 2289100 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Lys 48 - Glu Lys48Glu aag/gag 142 142 pyrazinamide (PZA) 25336456 yes 2289100 2289100 SNP 1 a t coding Rv2043c pncA 2289241 2288681 561 - Lys 48 - STOP Lys48STOP aag/tag 142 142 pyrazinamide (PZA) 25336456 yes 2289103 2289103 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Thr 47 - Ala Thr47Ala acc/gcc 139 139 pyrazinamide (PZA) 22646308 2289103 2289103 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Thr 47 - Pro Thr47Pro acc/ccc 139 139 pyrazinamide (PZA) 25336456 yes 2289108 2289108 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 45 - Gly Val45Gly gtg/ggg 134 134 pyrazinamide (PZA) 11641519 2289111 2289111 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 44 - Gly Val44Gly gtc/ggc 131 131 pyrazinamide (PZA) 25336456 yes 2289133 2289133 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Glu 37 - top Glu37top gaa/taa 109 109 pyrazinamide (PZA) 25336456 yes 2289138 2289138 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Leu 35 - Pro Leu35Pro ctg/ccg 104 104 pyrazinamide (PZA) 25336456 yes 2289140 2289140 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - Tyr 34 - STOP Tyr34STOP tac/tag 102 102 pyrazinamide (PZA) 25336456 yes 2289150 2289150 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Ile 31 - Ser Ile31Ser atc/agc 92 92 pyrazinamide (PZA) 25336456 yes 2289159 2289159 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Ala 28 - Asp Ala28Asp gcc/gac 83 83 pyrazinamide (PZA) 11641519 2289162 2289162 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Leu 27 - Pro Leu27Pro ctg/ccg 80 80 pyrazinamide (PZA) 25336456 yes 2289171 2289171 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Gly 24 - Asp Gly24Asp ggc/gac 71 71 pyrazinamide (PZA) 25336456 yes 2289180 2289180 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 21 - Gly Val21Gly gta/gga 62 62 pyrazinamide (PZA) 25336456 yes 2289186 2289186 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Leu 19 - Pro Leu19Pro ctg/ccg 56 56 pyrazinamide (PZA) 25336456 yes 2289193 2289193 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Gly 17 - Ser Gly17Ser ggc/agc 49 49 pyrazinamide (PZA) 25336456 yes 2289200 2289200 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Cys 14 - STOP Cys14STOP tgc/tga 42 42 pyrazinamide (PZA) 25336456 yes 2289201 2289201 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Cys 14 - Tyr Cys14Tyr tgc/tac 41 41 pyrazinamide (PZA) 11641519 2289202 2289202 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Cys 14 - Arg Cys14Arg tgc/cgc 40 40 pyrazinamide (PZA) 25336456 yes 2289203 2289203 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - Phe 13 - Leu Phe13Leu ttc/ttg 39 39 pyrazinamide (PZA) 25336456 yes 2289204 2289204 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Phe 13 - Ser Phe13Ser ttc/tcc 38 38 pyrazinamide (PZA) 10390238 2289206 2289206 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - Asp 12 - Glu Asp12Glu gac/gag 36 36 pyrazinamide (PZA) 25336456 yes 2289207 2289207 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Asp 12 - Ala Asp12Ala gac/gcc 35 35 pyrazinamide (PZA) 25336456 yes 2289208 2289208 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Asp 12 - Asn Asp12Asn gac/aac 34 34 pyrazinamide (PZA) 9055989 2289213 2289213 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Gln 10 - Arg Gln10Arg cag/cgg 29 29 pyrazinamide (PZA) 10681313 2289213 2289213 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Gln 10 - Pro Gln10Pro cag/ccg 29 29 pyrazinamide (PZA) 21300839 2289214 2289214 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Gln 10 - Lys Gln10Lys cag/aag 28 28 pyrazinamide (PZA) 25336456 yes 2289216 2289216 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Val 9 - Ala Val9Ala gtg/gcg 26 26 pyrazinamide (PZA) 11641519 2289216 2289216 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 9 - Gly Val9Gly gtg/ggg 26 26 pyrazinamide (PZA) 11641519 2289218 2289218 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Asp 8 - Glu Asp8Glu gac/gaa 24 24 pyrazinamide (PZA) 25336456 yes 2289219 2289219 SNP 1 a c coding Rv2043c pncA 2289241 2288681 561 - Asp 8 - Ala Asp8Ala gac/gcc 23 23 pyrazinamide (PZA) 25336456 yes 2289219 2289219 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Asp 8 - Gly Asp8Gly gac/ggc 23 23 pyrazinamide (PZA) 11641519 2289220 2289220 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Asp 8 - Asn Asp8Asn gac/aac 22 22 pyrazinamide (PZA) 25336456 yes 2289222 2289222 SNP 1 t a coding Rv2043c pncA 2289241 2288681 561 - Val 7 - Asp Val7Asp gtc/gac 20 20 pyrazinamide (PZA) 11641519 2289222 2289222 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Val 7 - Gly Val7Gly gtc/ggc 20 20 pyrazinamide (PZA) 25336456 yes 2289223 2289223 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Val 7 - Phe Val7Phe gtc/ttc 19 19 pyrazinamide (PZA) 25336456 yes 2289225 2289225 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Ile 6 - Thr Ile6Thr atc/acc 17 17 pyrazinamide (PZA) 25336456 yes 2289226 - Ins 1 t tg coding Rv2043c pncA 2289241 2288681 561 - Ile 6 - - Ile6- atc/catc 16 16 pyrazinamide (PZA) 22646308 2289231 2289231 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Leu 4 - Ser Leu4Ser ttg/tcg 11 11 pyrazinamide (PZA) 25336456 yes 2289231 2289231 SNP 1 t g coding Rv2043c pncA 2289241 2288681 561 - Leu 4 - Trp Leu4Trp ttg/tgg 11 11 pyrazinamide (PZA) 11641519 2289234 2289234 SNP 1 c a coding Rv2043c pncA 2289241 2288681 561 - Ala 3 - Glu Ala3Glu gcg/gag 8 8 pyrazinamide (PZA) 25336456 yes 2289235 2289235 SNP 1 g c coding Rv2043c pncA 2289241 2288681 561 - Ala 3 - Pro Ala3Pro gcg/ccg 7 7 pyrazinamide (PZA) 10390238 2289239 2289239 SNP 1 g t coding Rv2043c pncA 2289241 2288681 561 - Met 1 - Ile Met1Ile atg/att 3 3 pyrazinamide (PZA) 11641519 2289239 2289239 SNP 1 g a coding Rv2043c pncA 2289241 2288681 561 - Met 1 - Ile Met1Ile atg/ata 3 3 pyrazinamide (PZA) 25336456 yes 2289240 2289240 SNP 1 t a coding Rv2043c pncA 2289241 2288681 561 - Met 1 - Lys Met1Lys atg/aag 2 2 pyrazinamide (PZA) 25336456 yes 2289240 2289240 SNP 1 t c coding Rv2043c pncA 2289241 2288681 561 - Met 1 - Thr Met1Thr atg/acg 2 2 pyrazinamide (PZA) 25336456 yes 2289248 2289248 SNP 1 t c intergenic Rv2043c pncA 2289241 2288681 561 - - - - - --- - -7 -7 pyrazinamide (PZA) 25336456 yes 2289248 2289248 SNP 1 t g intergenic Rv2043c pncA 2289241 2288681 561 - - - - - --- - -7 -7 pyrazinamide (PZA) 25336456 yes 2289252 2289252 SNP 1 a g intergenic Rv2043c pncA 2289241 2288681 561 - - - - - --- - -11 -11 pyrazinamide (PZA) 22646308 yes 2289252 2289252 SNP 1 a c intergenic Rv2043c pncA 2289241 2288681 561 - - - - - --- - -11 -11 pyrazinamide (PZA) 25336456 yes 2289252 2289252 SNP 1 a t intergenic Rv2043c pncA 2289241 2288681 561 - - - - - --- - -11 -11 pyrazinamide (PZA) 25336456 yes 2715342 2715342 SNP 1 g a intergenic Rv2416c eis 2715332 2714124 1209 - - - - - --- - -10 -10 kanamycin (KAN) 21300839 2715346 2715346 SNP 1 c t intergenic Rv2416c eis 2715332 2714124 1209 - - - - - --- - -14 -14 kanamycin (KAN) 21300839 2726136 2726136 SNP 1 c t intergenic Rv2428 ahpC 2726193 2726780 588 + - - - - --- - -57 -57 isoniazid (INH) 22646308 2726145 2726145 SNP 1 g a intergenic Rv2428 ahpC 2726193 2726780 588 + - - - - --- - -48 -48 isoniazid (INH) 12654653 3073808 3073808 SNP 1 c g coding Rv2764c thyA 3074471 3073680 792 - Arg 222 - Gly Arg222Gly cgc/ggc 664 664 para-aminosalicylic acid (PAS) 15225321 4241078 4241078 SNP 1 a g coding Rv3793 embC 4239863 4243147 3285 + Ile 406 - Val Ile406Val atc/gtc 1216 1216 ethambutol (EMB) 20427375 4243221 4243221 SNP 1 c t intergenic Rv3794 embA 4243233 4246517 3285 + - - - - --- - -12 -12 ethambutol (EMB) 20427375 4243225 4243225 SNP 1 c a intergenic Rv3794 embA 4243233 4246517 3285 + - - - - --- - -8 -8 ethambutol (EMB) 20427375 4243242 4243242 SNP 1 g a coding Rv3794 embA 4243233 4246517 3285 + Asp 4 - Asn Asp4Asn gac/aac 10 10 ethambutol (EMB) 10639358 4243245 4243245 SNP 1 g a coding Rv3794 embA 4243233 4246517 3285 + Gly 5 - Ser Gly5Ser ggt/agt 13 13 ethambutol (EMB) 10639358 4243833 4243833 SNP 1 g a coding Rv3794 embA 4243233 4246517 3285 + Ala 201 - Thr Ala201Thr gcg/acg 601 601 ethambutol (EMB) 10639358 4244193 4244193 SNP 1 g a coding Rv3794 embA 4243233 4246517 3285 + Gly 321 - Ser Gly321Ser ggc/agc 961 961 ethambutol (EMB) 10639358 4244281 4244281 SNP 1 g a coding Rv3794 embA 4243233 4246517 3285 + Gly 350 - Asp Gly350Asp ggc/gac 1049 1049 ethambutol (EMB) 10639358 4244617 4244617 SNP 1 c t coding Rv3794 embA 4243233 4246517 3285 + Ala 462 - Val Ala462Val gcg/gtg 1385 1385 ethambutol (EMB) 10639358 4245730 4245730 SNP 1 a c coding Rv3794 embA 4243233 4246517 3285 + Asp 833 - Ala Asp833Ala gac/gcc 2498 2498 ethambutol (EMB) 10639358 4246734 4246734 SNP 1 t g coding Rv3795 embB 4246514 4249810 3297 + Leu 74 - Arg Leu74Arg ctg/cgg 221 221 ethambutol (EMB) 20427375 4247402 4247402 SNP 1 t g coding Rv3795 embB 4246514 4249810 3297 + Ser 297 - Ala Ser297Ala tcg/gcg 889 889 ethambutol (EMB) 10639358 4247429 4247429 SNP 1 a g coding Rv3795 embB 4246514 4249810 3297 + Met 306 - Val Met306Val atg/gtg 916 916 ethambutol (EMB) 21300839 yes 4247429 4247429 SNP 1 a c coding Rv3795 embB 4246514 4249810 3297 + Met 306 - Leu Met306Leu atg/ctg 916 916 ethambutol (EMB) 9257740 yes 4247430 4247430 SNP 1 t c coding Rv3795 embB 4246514 4249810 3297 + Met 306 - Thr Met306Thr atg/acg 917 917 ethambutol (EMB) 11854934 yes 4247431 4247431 SNP 1 g a coding Rv3795 embB 4246514 4249810 3297 + Met 306 - Ile Met306Ile atg/ata 918 918 ethambutol (EMB) 21300839 yes 4247431 4247431 SNP 1 g c coding Rv3795 embB 4246514 4249810 3297 + Met 306 - Ile Met306Ile atg/atc 918 918 ethambutol (EMB) 21300839 yes 4247431 4247431 SNP 1 g t coding Rv3795 embB 4246514 4249810 3297 + Met 306 - Ile Met306Ile atg/att 918 918 ethambutol (EMB) 21300839 yes 4247469 4247469 SNP 1 a c coding Rv3795 embB 4246514 4249810 3297 + Tyr 319 - Ser Tyr319Ser tat/tct 956 956 ethambutol (EMB) 16641474 4247495 4247495 SNP 1 g t coding Rv3795 embB 4246514 4249810 3297 + Asp 328 - Tyr Asp328Tyr gat/tat 982 982 ethambutol (EMB) 10639358 4247496 4247496 SNP 1 a g coding Rv3795 embB 4246514 4249810 3297 + Asp 328 - Gly Asp328Gly gat/ggt 983 983 ethambutol (EMB) 10639358 4247507 4247507 SNP 1 t c coding Rv3795 embB 4246514 4249810 3297 + Trp 332 - Arg Trp332Arg tgg/cgg 994 994 ethambutol (EMB) 22646308 4247513 4247513 SNP 1 t c coding Rv3795 embB 4246514 4249810 3297 + Tyr 334 - His Tyr334His tac/cac 1000 1000 ethambutol (EMB) 16641474 4247573 4247573 SNP 1 g a coding Rv3795 embB 4246514 4249810 3297 + Asp 354 - Asn Asp354Asn gac/aac 1060 1060 ethambutol (EMB) 20427375 4247717 4247717 SNP 1 c g coding Rv3795 embB 4246514 4249810 3297 + Leu 402 - Val Leu402Val ctg/gtg 1204 1204 ethambutol (EMB) 20427375 4247723 4247723 SNP 1 c t coding Rv3795 embB 4246514 4249810 3297 + Pro 404 - Ser Pro404Ser ccg/tcg 1210 1210 ethambutol (EMB) 20427375 4247729 4247729 SNP 1 g a coding Rv3795 embB 4246514 4249810 3297 + Gly 406 - Ser Gly406Ser ggc/agc 1216 1216 ethambutol (EMB) 20427375 yes 4247729 4247729 SNP 1 g t coding Rv3795 embB 4246514 4249810 3297 + Gly 406 - Cys Gly406Cys ggc/tgc 1216 1216 ethambutol (EMB) 24055765 yes 4247730 4247730 SNP 1 g c coding Rv3795 embB 4246514 4249810 3297 + Gly 406 - Ala Gly406Ala ggc/gcc 1217 1217 ethambutol (EMB) 20427375 yes 4247730 4247730 SNP 1 g a coding Rv3795 embB 4246514 4249810 3297 + Gly 406 - Asp Gly406Asp ggc/gac 1217 1217 ethambutol (EMB) 20427375 yes 4247863 4247863 SNP 1 c g coding Rv3795 embB 4246514 4249810 3297 + Ile 450 - Met Ile450Met atc/atg 1350 1350 ethambutol (EMB) 20427375 4247873 4247873 SNP 1 g a coding Rv3795 embB 4246514 4249810 3297 + Ala 454 - Thr Ala454Thr gcg/acg 1360 1360 ethambutol (EMB) 20427375 4248002 4248002 SNP 1 c a coding Rv3795 embB 4246514 4249810 3297 + Gln 497 - Lys Gln497Lys cag/aag 1489 1489 ethambutol (EMB) 20427375 4248003 4248003 SNP 1 a g coding Rv3795 embB 4246514 4249810 3297 + Gln 497 - Arg Gln497Arg cag/cgg 1490 1490 ethambutol (EMB) 20427375 yes 4248747 4248747 SNP 1 g a coding Rv3795 embB 4246514 4249810 3297 + Gly 745 - Asp Gly745Asp ggc/gac 2234 2234 ethambutol (EMB) 10639358 4249518 4249518 SNP 1 a g coding Rv3795 embB 4246514 4249810 3297 + His 1002 - Arg His1002Arg cac/cgc 3005 3005 ethambutol (EMB) 22646308 4326087 4326087 SNP 1 c a coding Rv3854c ethA 4327473 4326004 1470 - Arg 463 - Ser Arg463Ser cgt/agt 1387 1387 ethionamide (ETH) 14638486 4326236 4326236 SNP 1 g a coding Rv3854c ethA 4327473 4326004 1470 - Gly 413 - Asp Gly413Asp ggt/gat 1238 1238 ethionamide (ETH) 14638486 4326300 4326300 SNP 1 a g coding Rv3854c ethA 4327473 4326004 1470 - Thr 392 - Ala Thr392Ala acg/gcg 1174 1174 ethionamide (ETH) 14638486 4326320 4326320 SNP 1 g a coding Rv3854c ethA 4327473 4326004 1470 - Gly 385 - Asp Gly385Asp ggc/gac 1154 1154 ethionamide (ETH) 14638486 4326333 4326333 SNP 1 g c coding Rv3854c ethA 4327473 4326004 1470 - Ala 381 - Pro Ala381Pro gcc/ccc 1141 1141 ethionamide (ETH) 10944230 4326449 4326449 SNP 1 c a coding Rv3854c ethA 4327473 4326004 1470 - Thr 342 - Lys Thr342Lys acg/aag 1025 1025 ethionamide (ETH) 10944230 4326461 4326461 SNP 1 t g coding Rv3854c ethA 4327473 4326004 1470 - Ile 338 - Ser Ile338Ser atc/agc 1013 1013 ethionamide (ETH) 14638486 4326738 4326738 SNP 1 c t coding Rv3854c ethA 4327473 4326004 1470 - Gln 246 - STOP Gln246STOP cag/tag 736 736 ethionamide (ETH) 14638486 4326807 4326807 SNP 1 g a coding Rv3854c ethA 4327473 4326004 1470 - Glu 223 - Lys Glu223Lys gag/aag 667 667 ethionamide (ETH) 14638486 4326917 4326917 SNP 1 c a coding Rv3854c ethA 4327473 4326004 1470 - Thr 186 - Lys Thr186Lys acg/aag 557 557 ethionamide (ETH) 10944230 4327224 4327224 SNP 1 t g coding Rv3854c ethA 4327473 4326004 1470 - Tyr 84 - Asp Tyr84Asp tac/gac 250 250 ethionamide (ETH) 10944230 4327301 4327301 SNP 1 a c coding Rv3854c ethA 4327473 4326004 1470 - Asp 58 - Ala Asp58Ala gac/gcc 173 173 ethionamide (ETH) 10944230 4327307 4327307 SNP 1 a c coding Rv3854c ethA 4327473 4326004 1470 - Asp 56 - Ala Asp56Ala gac/gcc 167 167 ethionamide (ETH) 14638486 4327322 4327322 SNP 1 c t coding Rv3854c ethA 4327473 4326004 1470 - Pro 51 - Leu Pro51Leu ccc/ctc 152 152 ethionamide (ETH) 10944230 4327346 4327346 SNP 1 g a coding Rv3854c ethA 4327473 4326004 1470 - Gly 43 - Asp Gly43Asp ggc/gac 128 128 ethionamide (ETH) 14638486 4327347 4327347 SNP 1 g t coding Rv3854c ethA 4327473 4326004 1470 - Gly 43 - Cys Gly43Cys ggc/tgc 127 127 ethionamide (ETH) 10944230 4407604 4407604 SNP 1 c a coding Rv3919c gidB 4408202 4407528 675 - Ala 200 - Glu Ala200Glu gcg/gag 599 599 streptomycin (SM) 22646308 4407790 4407790 SNP 1 c t coding Rv3919c gidB 4408202 4407528 675 - Ala 138 - Val Ala138Val gcg/gtg 413 413 streptomycin (SM) 22646308 4407824 4407824 SNP 1 c t coding Rv3919c gidB 4408202 4407528 675 - Gln 127 - STOP Gln127STOP caa/taa 379 379 streptomycin (SM) 22646308 4407931 4407931 SNP 1 t c coding Rv3919c gidB 4408202 4407528 675 - Leu 91 - Pro Leu91Pro cta/cca 272 272 streptomycin (SM) 22646308 4407940 4407940 SNP 1 t c coding Rv3919c gidB 4408202 4407528 675 - Val 88 - Ala Val88Ala gta/gca 263 263 streptomycin (SM) 22646308 4407992 4407992 SNP 1 g a coding Rv3919c gidB 4408202 4407528 675 - Gly 71 - Arg Gly71Arg gga/aga 211 211 streptomycin (SM) 22646308 4408009 4408009 SNP 1 t g coding Rv3919c gidB 4408202 4407528 675 - Val 65 - Gly Val65Gly gtc/ggc 194 194 streptomycin (SM) 22646308 4408102 4408102 SNP 1 g c coding Rv3919c gidB 4408202 4407528 675 - Gly 34 - Ala Gly34Ala ggg/gcg 101 101 streptomycin (SM) 22646308 156593 156593 SNP 1 t c coding Rv0129c fbpC 157600 156578 1023 - Ala 336 - Ala Ala336Ala gct/gcc 1008 1008 phylo (M. canettii) 22768315 157129 157129 SNP 1 g a coding Rv0129c fbpC 157600 156578 1023 - Gly 158 - Ser Gly158Ser ggc/agc 472 472 phylo (Delhi/CAS) 22768315 157292 157292 SNP 1 g a coding Rv0129c fbpC 157600 156578 1023 - Glu 103 - Glu Glu103Glu gag/gaa 309 309 phylo (LAM) 22768315 273265 273265 SNP 1 g t coding Rv0228 - 273055 274278 1224 + Gly 71 - Cys Gly71Cys ggc/tgc 211 211 phylo (West African 2) 22768315 491591 491591 SNP 1 a t coding Rv0407 fgd1 490783 491793 1011 + Lys 270 - Met Lys270Met aag/atg 809 809 phylo (Haarlem) 22768315 491668 491668 SNP 1 a g coding Rv0407 fgd1 490783 491793 1011 + Lys 296 - Glu Lys296Glu aag/gag 886 886 phylo (West African 2) 22768315 491742 491742 SNP 1 t c coding Rv0407 fgd1 490783 491793 1011 + Phe 320 - Phe Phe320Phe ttt/ttc 960 960 phylo (not Euro-American, M. africanum, M. bovis, M. canettii, M. caprae, M. microti, M. pinipedii, Beijing, Delhi/CAS, EAI) 22768315 495108 495108 SNP 1 c a coding Rv0410c pknG 497314 495062 2253 - Thr 736 - Lys Thr736Lys acg/aag 2207 2207 phylo (West African 2) 22768315 495322 495322 SNP 1 g a coding Rv0410c pknG 497314 495062 2253 - Ala 665 - Thr Ala665Thr gcc/acc 1993 1993 phylo (West African 1a, West African 1b) 22768315 495473 495473 SNP 1 g a coding Rv0410c pknG 497314 495062 2253 - Ser 614 - Ser Ser614Ser tcg/tca 1842 1842 phylo (EAI) 22768315 497108 497108 SNP 1 g a coding Rv0410c pknG 497314 495062 2253 - Pro 69 - Pro Pro69Pro ccg/cca 207 207 phylo (M. bovis, M. caprae) 22768315 648756 648756 SNP 1 c t coding Rv0557 mgtA 648536 649672 1137 + Thr 74 - Ile Thr74Ile acg/atg 221 221 phylo (West African 1a, West African 1b) 22768315 648856 648856 SNP 1 t c coding Rv0557 mgtA 648536 649672 1137 + Gly 107 - Gly Gly107Gly ggt/ggc 321 321 phylo (not Euro-American, M. africanum, M. bovis, M. canettii, M. caprae, M. microti, M. pinipedii, Beijing, Delhi/CAS, EAI) 22768315 648990 648990 SNP 1 g c coding Rv0557 mgtA 648536 649672 1137 + Arg 152 - Pro Arg152Pro cgc/ccc 455 455 phylo (Haarlem) 22768315 648992 648992 SNP 1 c g coding Rv0557 mgtA 648536 649672 1137 + Leu 153 - Val Leu153Val ctg/gtg 457 457 phylo (S-type) 22768315 649067 649067 SNP 1 c g coding Rv0557 mgtA 648536 649672 1137 + Arg 178 - Gly Arg178Gly cgg/ggg 532 532 phylo (Cameroon) 22768315 649345 649345 SNP 1 c t coding Rv0557 mgtA 648536 649672 1137 + Ala 270 - Ala Ala270Ala gcc/gct 810 810 phylo (EAI) 22768315 649446 649446 SNP 1 g a coding Rv0557 pimB 648536 649672 1137 + Gly 304 - Asp Gly304Asp ggc/gac 911 911 phylo (West African 1a, West African 1b) 22768315 649585 649585 SNP 1 g a coding Rv0557 mgtA 648536 649672 1137 + Val 350 - Val Val350Val gtg/gta 1050 1050 phylo (M. caprae) 22768315 649601 649601 SNP 1 c t coding Rv0557 mgtA 648536 649672 1137 + Pro 356 - Ser Pro356Ser ccg/tcg 1066 1066 phylo (M. canettii) 22768315 1128814 1128814 SNP 1 g a coding Rv1009 rpfB 1128091 1129179 1089 + Glu 242 - Lys Glu242Lys gag/aag 724 724 phylo (EAI Manila) 22768315 1128825 1128825 SNP 1 c t coding Rv1009 rpfB 1128091 1129179 1089 + Gly 245 - Gly Gly245Gly ggc/ggt 735 735 phylo (M. microti, M. pinipedii) 22768315 1128915 1128915 SNP 1 g c coding Rv1009 rpfB 1128091 1129179 1089 + Glu 275 - Asp Glu275Asp gag/gac 825 825 phylo (M. canettii) 22768315 1128935 1128935 SNP 1 g a coding Rv1009 rpfB 1128091 1129179 1089 + Gly 282 - Glu Gly282Glu gga/gaa 845 845 phylo (M. bovis, M. caprae) 22768315 1129124 1129124 SNP 1 t a coding Rv1009 rpfB 1128091 1129179 1089 + Leu 345 - Gln Leu345Gln ctg/cag 1034 1034 phylo (M. canettii) 22768315 1129128 1129128 SNP 1 t c coding Rv1009 rpfB 1128091 1129179 1089 + Arg 346 - Arg Arg346Arg cgt/cgc 1038 1038 phylo (M. canettii) 22768315 1129160 1129160 SNP 1 c t coding Rv1009 rpfB 1128091 1129179 1089 + Ala 357 - Val Ala357Val gca/gta 1070 1070 phylo (M. bovis) 22768315 1129165 1129165 SNP 1 g a coding Rv1009 rpfB 1128091 1129179 1089 + Ala 359 - Thr Ala359Thr gcg/acg 1075 1075 phylo (TUR) 22768315 1816848 1816848 SNP 1 g t coding Rv1617 pykA 1816189 1817607 1419 + Glu 220 - Asp Glu220Asp gag/gat 660 660 phylo (M. africanum, M. caprae, M. microti, M. pinipedii) 22768315 2053454 2053454 SNP 1 g a coding Rv1811 mgtC 2053443 2054147 705 + Leu 4 - Leu Leu4Leu ctg/cta 12 12 phylo (Ural) 22768315 2053487 2053487 SNP 1 c t coding Rv1811 mgtC 2053443 2054147 705 + Val 15 - Val Val15Val gtc/gtt 45 45 phylo (M. canettii) 22768315 2053682 2053682 SNP 1 c t coding Rv1811 mgtC 2053443 2054147 705 + Ile 80 - Ile Ile80Ile atc/att 240 240 phylo (LAM) 22768315 2053726 2053726 SNP 1 c t coding Rv1811 mgtC 2053443 2054147 705 + Thr 95 - Met Thr95Met acg/atg 284 284 phylo (West African 1b) 22768315 2053762 2053762 SNP 1 c t coding Rv1811 mgtC 2053443 2054147 705 + Ala 107 - Val Ala107Val gcc/gtc 320 320 phylo (West African 2) 22768315 2053987 2053987 SNP 1 g a coding Rv1811 mgtC 2053443 2054147 705 + Arg 182 - His Arg182His cgc/cac 545 545 phylo (Haarlem) 22768315 2134258 2134258 SNP 1 c t coding Rv1884c rpfC 2134261 2133731 531 - His 2 - Tyr His2Tyr cat/tat 4 4 phylo (M. canettii) 22768315 2223896 2223896 SNP 1 t c coding Rv1980c mpt64 2224029 2223343 687 - Met 45 - Thr Met45Thr atg/acg 134 134 phylo (M. canettii) 22768315 2223902 2223902 SNP 1 t a coding Rv1980c mpt64 2224029 2223343 687 - Ile 43 - Asn Ile43Asn att/aat 128 128 phylo (West African 1a, West African 1b) 22768315 2279228 2279228 SNP 1 g t coding Rv2032 acg 2279129 2280124 996 + Ala 34 - Ser Ala34Ser gcc/tcc 100 100 phylo (M. caprae) 22768315 2279314 2279314 SNP 1 g c coding Rv2032 acg 2279129 2280124 996 + Gly 62 - Gly Gly62Gly ggg/ggc 186 186 phylo (M. canettii) 22768315 2280081 2280081 SNP 1 c t coding Rv2032 acg 2279129 2280124 996 + Pro 318 - Leu Pro318Leu cca/cta 953 953 phylo (M. bovis, M. caprae) 22768315 2726105 2726105 SNP 1 g a intergenic Rv2428 ahpC 2726193 2726780 588 + - - - - --- - -88 -88 phylo (Delhi/CAS, 3) 22768315 2751764 2751764 SNP 1 g a coding Rv2450c rpfE 2752180 2751662 519 - Gly 139 - Gly Gly139Gly ggg/gga 417 417 phylo (M. canettii) 22768315 2751866 2751866 SNP 1 g a coding Rv2450c rpfE 2752180 2751662 519 - Ala 105 - Ala Ala105Ala gcg/gca 315 315 phylo (M. canettii) 22768315 2752122 2752122 SNP 1 c g coding Rv2450c rpfE 2752180 2751662 519 - Thr 20 - Arg Thr20Arg acg/agg 59 59 phylo (Beijing) 22768315 2752132 2752132 SNP 1 t c coding Rv2450c rpfE 2752180 2751662 519 - Leu 17 - Leu Leu17Leu ttg/ctg 49 49 phylo (West African 1a, West African 1b) 22768315 2936944 2936944 SNP 1 c g coding Rv2609c - 2937865 2936810 1056 - Gln 308 - Glu Gln308Glu cag/gag 922 922 phylo (M. canettii) 22768315 2939177 2939177 SNP 1 t c coding Rv2611c - 2939962 2939012 951 - Tyr 262 - Tyr Tyr262Tyr tat/tac 786 786 phylo (West African 2) 22768315 2939577 2939577 SNP 1 t g coding Rv2611c - 2939962 2939012 951 - Leu 129 - Arg Leu129Arg ctc/cgc 386 386 phylo (M. canettii) 22768315 2939716 2939716 SNP 1 t c coding Rv2611c - 2939962 2939012 951 - Cys 83 - Arg Cys83Arg tgc/cgc 247 247 phylo (M. canettii) 22768315 2940461 2940461 SNP 1 t c coding Rv2612c pgsA1 2940612 2939959 654 - Met 51 - Thr Met51Thr atg/acg 152 152 phylo (M. canettii) 22768315 2940562 2940562 SNP 1 c t coding Rv2612c pgsA1 2940612 2939959 654 - Thr 17 - Thr Thr17Thr acc/act 51 51 phylo (M. canettii) 22768315 2940608 2940608 SNP 1 g a coding Rv2612c pgsA1 2940612 2939959 654 - Ser 2 - Asn Ser2Asn agc/aac 5 5 phylo (EAI) 22768315 2940930 2940930 SNP 1 c t coding Rv2613c - 2941196 2940609 588 - Pro 89 - Pro Pro89Pro ccc/cct 267 267 phylo (M. canettii) 22768315 2941179 2941179 SNP 1 c t coding Rv2613c - 2941196 2940609 588 - Arg 6 - Arg Arg6Arg cgc/cgt 18 18 phylo (Delhi/CAS) 22768315 2955135 2955135 SNP 1 a c coding Rv2628 - 2955058 2955420 363 + Ile 26 - Ile Ile26Ile ata/atc 78 78 phylo (M. canettii) 22768315 2955202 2955202 SNP 1 t g coding Rv2628 - 2955058 2955420 363 + Ser 49 - Ala Ser49Ala tcc/gcc 145 145 phylo (M. canettii) 22768315 2955233 2955233 SNP 1 c t coding Rv2628 - 2955058 2955420 363 + Ser 59 - Leu Ser59Leu tcg/ttg 176 176 phylo (M.africanum, M. bovis, M. canettii, M. caprae, M. microti, M. pinipedii, EAI) 22768315 2955305 2955305 SNP 1 t g coding Rv2628 - 2955058 2955420 363 + Leu 83 - Trp Leu83Trp ttg/tgg 248 248 phylo (M. microti, M. pinipedii) 22768315 2955310 2955310 SNP 1 a g coding Rv2628 - 2955058 2955420 363 + Thr 85 - Ala Thr85Ala acc/gcc 253 253 phylo (M. canettii) 22768315 2955343 2955343 SNP 1 g a coding Rv2628 - 2955058 2955420 363 + Ala 96 - Thr Ala96Thr gcg/acg 286 286 phylo (West African 1a, West African 1b) 22768315 2955957 2955957 SNP 1 a c coding Rv2629 - 2955767 2956891 1125 + Asp 64 - Ala Asp64Ala gat/gct 191 191 phylo (Beijing) 22768315 2956731 2956731 SNP 1 c t coding Rv2629 - 2955767 2956891 1125 + Pro 322 - Leu Pro322Leu ccg/ctg 965 965 phylo (Ghana) 22768315 3296371 - Ins 7 g gccgcggc coding Rv2947c pks15 3297840 3296350 1491 - Gly 490 - - Gly490- ggc/gggccgcggc 1470 1470 phylo (not Euro-American, M. africanum, M. bovis, M. canettii, M. caprae, M. microti, M. pinipedii, Beijing, Delhi/CAS, EAI) 18578864 3986987 3986987 SNP 1 g t coding Rv3547 ddn 3986844 3987299 456 + Leu 48 - Leu Leu48Leu ctg/ctt 144 144 phylo (West African 1a, West African 1b) 22768315 3987050 3987050 SNP 1 c t coding Rv3547 ddn 3986844 3987299 456 + Asp 69 - Asp Asp69Asp gac/gat 207 207 phylo (M. canettii) 22768315 3987111 3987111 SNP 1 c g coding Rv3547 ddn 3986844 3987299 456 + Leu 90 - Val Leu90Val ctc/gtc 268 268 phylo (M. microti, M. pinipedii) 22768315 3987180 3987180 SNP 1 g a coding Rv3547 ddn 3986844 3987299 456 + Asp 113 - Asn Asp113Asn gac/aac 337 337 phylo (West African 1a, West African 1b) 22768315 3987287 3987287 SNP 1 t c coding Rv3547 ddn 3986844 3987299 456 + Val 148 - Val Val148Val gtt/gtc 444 444 phylo (M. canettii) 22768315 7539 7539 SNP 1 a g coding Rv0006 gyrA 7302 9818 2517 + Thr 80 - Ala Thr80Ala acc/gcc 238 238 phylo (Uganda I+II, 4,6,1) 24458512 7585 7585 SNP 1 g c coding Rv0006 gyrA 7302 9818 2517 + Ser 95 - Thr Ser95Thr agc/acc 284 284 phylo (not H37Rv) 24458512 491595 491595 SNP 1 c t coding Rv0407 fgd1 490783 491793 1011 + Ala 271 - Ala Ala271Ala gcc/gct 813 813 phylo (West African 1a) 24458512 575665 575665 SNP 1 g c coding Rv0486 mshA 575348 576790 1443 + Gly 106 - Gly Gly106Gly ggg/ggc 318 318 phylo (M. canettii) 24458512 575679 575679 SNP 1 a g coding Rv0486 mshA 575348 576790 1443 + Asn 111 - Ser Asn111Ser aac/agc 332 332 phylo (Haarlem) 24458512 575907 575907 SNP 1 c t coding Rv0486 mshA 575348 576790 1443 + Ala 187 - Val Ala187Val gca/gta 560 560 phylo (Beijing) 24458512 576077 576077 SNP 1 c t coding Rv0486 mshA 575348 576790 1443 + Leu 244 - Leu Leu244Leu ctg/ttg 730 730 phylo (Tur) 24458512 1461251 1461251 SNP 1 g t coding Rv1305 atpE 1461045 1461290 246 + Ala 69 - Ala Ala69Ala gcg/gct 207 207 phylo (West African 2) 24458512 1471848 - Ins 1 t tt ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 4 4 phylo (M. canettii) 24458512 1471851 1471851 SNP 1 t g ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 6 6 phylo (M. canettii) 24458512 1473079 1473079 SNP 1 g a ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 1234 1234 phylo (M. microti) 24458512 1473094 1473094 SNP 1 t c ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 1249 1249 phylo (M. pinipedii) 24458512 1673338 1673338 SNP 1 g a intergenic Rv1483 fabG1 1673440 1674183 744 + - - - - --- - -102 -102 phylo (West African 1a, West African 1b) 24458512 1674434 1674434 SNP 1 t c coding Rv1484 inhA 1674202 1675011 810 + Val 78 - Ala Val78Ala gtg/gcg 233 233 phylo (West African 2, 6) 24458512 1674520 1674520 SNP 1 c t coding Rv1484 inhA 1674202 1675011 810 + Pro 107 - Ser Pro107Ser ccg/tcg 319 319 phylo (M. pinipedii) 24458512 1674816 1674816 SNP 1 t c coding Rv1484 inhA 1674202 1675011 810 + Gly 205 - Gly Gly205Gly ggt/ggc 615 615 phylo (M. canettii) 24458512 1833554 1833554 SNP 1 a g coding Rv1630 rpsA 1833542 1834987 1446 + Thr 5 - Ala Thr5Ala acc/gcc 13 13 phylo (M. canettii) 24458512 1833568 1833568 SNP 1 g c coding Rv1630 rpsA 1833542 1834987 1446 + Pro 9 - Pro Pro9Pro ccg/ccc 27 27 phylo (M. canettii) 24458512 1834169 1834169 SNP 1 a g coding Rv1630 rpsA 1833542 1834987 1446 + Thr 210 - Ala Thr210Ala acc/gcc 628 628 phylo (M. canettii) 24458512 1834177 1834177 SNP 1 a c coding Rv1630 rpsA 1833542 1834987 1446 + Arg 212 - Arg Arg212Arg cga/cgc 636 636 phylo (Beijing, 2) 24458512 1834859 1834859 SNP 1 g a coding Rv1630 rpsA 1833542 1834987 1446 + Ala 440 - Thr Ala440Thr gcg/acg 1318 1318 phylo (M. bovis, M. caprae) 24458512 1834912 1834912 SNP 1 a g coding Rv1630 rpsA 1833542 1834987 1446 + Glu 457 - Glu Glu457Glu gaa/gag 1371 1371 phylo (M. canettii) 24458512 2154724 2154724 SNP 1 g t coding Rv1908c katG 2156111 2153889 2223 - Arg 463 - Leu Arg463Leu cgg/ctg 1388 1388 phylo (not Euro-American, M. africanum, M. bovis, M . canettii, M. caprae, M. Microti, M. pinipedii, Beijing, Delhi/CAS, EAI, 4) 9275218 2289047 2289047 SNP 1 c t coding Rv2043c pncA 2289241 2288681 561 - Ser 65 - Ser Ser65Ser tcc/tct 195 195 phylo (Delhi/CAS) 24458512 2289073 2289073 SNP 1 c g coding Rv2043c pncA 2289241 2288681 561 - His 57 - Asp His57Asp cac/gac 169 169 phylo (M. bovis) 24458512 2289104 2289104 SNP 1 a g coding Rv2043c pncA 2289241 2288681 561 - Ala 46 - Ala Ala46Ala gca/gcg 138 138 phylo (M. canettii) 24458512 3073868 3073868 SNP 1 a g coding Rv2764c thyA 3074471 3073680 792 - Thr 202 - Ala Thr202Ala acc/gcc 604 604 phylo (LAM) 24458512 3326554 3326554 SNP 1 a c coding Rv2971 - 3326101 3326949 849 + Asn 152 - His Asn152His aac/cac 454 454 phylo (not Euro-American, M. africanum, M. bovis, M . canettii, M. caprae, M. Microti, M. pinipedii, Beijing, Delhi/CAS, EAI) 22911768 4240671 4240671 SNP 1 c t coding Rv3793 embC 4239863 4243147 3285 + Thr 270 - Ile Thr270Ile acc/atc 809 809 phylo (M. africanum, M. bovis, M. canettii, M.caprae, M. Microti, M. pinipedii, EAI) 24458512 4242075 4242075 SNP 1 g a coding Rv3793 embC 4239863 4243147 3285 + Arg 738 - Gln Arg738Gln cgg/cag 2213 2213 phylo (Delhi/CAS, 3) 20427375 4242803 4242803 SNP 1 g c coding Rv3793 embC 4239863 4243147 3285 + Val 981 - Leu Val981Leu gtg/ctg 2941 2941 phylo (Ghana, Haarlem, X-Type, 4,1) 22646308 4242970 4242970 SNP 1 c t coding Rv3793 embC 4239863 4243147 3285 + Thr 1036 Thr Thr1036Thr acc/act 3108 3108 phylo (M. bovis, M. caprae) 24458512 4243377 4243377 SNP 1 a c coding Rv3794 embA 4243233 4246517 3285 + Ser 49 - Arg Ser49Arg agc/cgc 145 145 phylo (M. canettii) 24458512 4243460 4243460 SNP 1 c t coding Rv3794 embA 4243233 4246517 3285 + Cys 76 - Cys Cys76Cys tgc/tgt 228 228 phylo (Beijing, 2,2) 20427375 4243690 4243690 SNP 1 t c coding Rv3794 embA 4243233 4246517 3285 + Met 153 - Thr Met153Thr atg/acg 458 458 phylo (M. canettii) 24458512 4247590 4247590 SNP 1 a g coding Rv3795 embB 4246514 4249810 3297 + Leu 359 - Leu Leu359Leu cta/ctg 1077 1077 phylo (M. canettii) 24458512 4247646 4247646 SNP 1 a c coding Rv3795 embB 4246514 4249810 3297 + Glu 378 - Ala Glu378Ala gag/gcg 1133 1133 phylo (M. africanum, M. bovis, M. canettii, M. caprae, M. Microti, M. pinipedii, EAI) 24458512 4247815 4247815 SNP 1 c t coding Rv3795 embB 4246514 4249810 3297 + Ala 434 - Ala Ala434Ala gcc/gct 1302 1302 phylo (M. canettii) 24458512 4248195 4248195 SNP 1 a g coding Rv3795 embB 4246514 4249810 3297 + Lys 561 - Arg Lys561Arg aag/agg 1682 1682 phylo (M. canettii) 24458512 4248206 4248206 SNP 1 a g coding Rv3795 embB 4246514 4249810 3297 + Ser 565 - Gly Ser565Gly agc/ggc 1693 1693 phylo (M. canettii) 24458512 4248439 4248439 SNP 1 c t coding Rv3795 embB 4246514 4249810 3297 + Thr 642 - Thr Thr642Thr acc/act 1926 1926 phylo (M. canettii) 24458512 4407588 4407588 SNP 1 a g coding Rv3919c gidB 4408202 4407528 675 - Ala 205 - Ala Ala205Ala gca/gcg 615 615 phylo (M. africanum, M. bovis, M. canettii, M. caprae, M. Microti, M. pinipedii, Beijing, Delhi/CAS, EAI, 4) 24458512 4407873 4407873 SNP 1 g t coding Rv3919c gidB 4408202 4407528 675 - Val 110 - Val Val110Val gtg/gtt 330 330 phylo (EAI, 1) 24458512 4407927 4407927 SNP 1 a c coding Rv3919c gidB 4408202 4407528 675 - Glu 92 - Asp Glu92Asp gaa/gac 276 276 phylo (Beijing, 2,2) 24458512 4408156 4408156 SNP 1 t g coding Rv3919c gidB 4408202 4407528 675 - Leu 16 - Arg Leu16Arg ctt/cgt 47 47 phylo (LAM, 4,3) 22646308 4408185 4408185 SNP 1 c t coding Rv3919c gidB 4408202 4407528 675 - Pro 6 - Pro Pro6Pro ccc/cct 18 18 phylo (M. canettii) 24458512 4408213 4408213 SNP 1 c t intergenic Rv3919c gidB 4408202 4407528 675 - - - - - --- - -11 -11 phylo (Ural) 24458512 5520 5520 SNP 1 c t coding Rv0005 gyrB 5240 7267 2028 + Pro 94 - Leu Pro94Leu ccg/ctg 281 281 phylo (4,3,2,1) 25176035 6112 6112 SNP 1 g c coding Rv0005 gyrB 5240 7267 2028 + Met 291 - Ile Met291Ile atg/atc 873 873 phylo (1) 25176035 6124 6124 SNP 1 c t coding Rv0005 gyrB 5240 7267 2028 + Ala 295 - Ala Ala295Ala gcc/gct 885 885 phylo (1,1,2) 25176035 7222 7222 SNP 1 c t coding Rv0005 gyrB 5240 7267 2028 + Ser 661 - Ser Ser661Ser agc/agt 1983 1983 phylo (4,3,2,1) 25176035 7892 7892 SNP 1 g a coding Rv0006 gyrA 7302 9818 2517 + Leu 197 - Leu Leu197Leu ctg/cta 591 591 phylo (4,5) 25176035 8040 8040 SNP 1 g a coding Rv0006 gyrA 7302 9818 2517 + Gly 247 - Ser Gly247Ser ggc/agc 739 739 phylo (4,3,3) 25176035 8452 8452 SNP 1 c t coding Rv0006 gyrA 7302 9818 2517 + Ala 384 - Val Ala384Val gca/gta 1151 1151 phylo (1) 25176035 8876 8876 SNP 1 c t coding Rv0006 gyrA 7302 9818 2517 + Tyr 525 - Tyr Tyr525Tyr tac/tat 1575 1575 phylo (7) 25176035 9260 9260 SNP 1 g c coding Rv0006 gyrA 7302 9818 2517 + Leu 653 - Leu Leu653Leu ctg/ctc 1959 1959 phylo (1,2,1) 25176035 9566 9566 SNP 1 c t coding Rv0006 gyrA 7302 9818 2517 + Tyr 755 - Tyr Tyr755Tyr tac/tat 2265 2265 phylo (5) 25176035 9611 9611 SNP 1 c t coding Rv0006 gyrA 7302 9818 2517 + Asp 770 - Asp Asp770Asp gac/gat 2310 2310 phylo (3,1,2,2) 25176035 62657 62657 SNP 1 g a coding Rv0058 dnaB 60396 63020 2625 + Pro 754 - Pro Pro754Pro ccg/cca 2262 2262 phylo (4,1) 25176035 107794 107794 SNP 1 c t coding Rv0098 fcoT 107600 108151 552 + Ala 65 - Ala Ala65Ala gcc/gct 195 195 phylo (4,1,2,1) 25176035 346693 346693 SNP 1 g t coding Rv0284 eccC3 345635 349627 3993 + Ser 353 - Ser Ser353Ser tcg/tct 1059 1059 phylo (2,2,2) 25176035 355181 355181 SNP 1 g a coding Rv0291 mycP3 354498 355883 1386 + Lys 228 - Lys Lys228Lys aag/aaa 684 684 phylo (4,4,1,1) 25176035 403364 403364 SNP 1 c t coding Rv0338c - 405841 403193 2649 - Pro 826 - Pro Pro826Pro ccc/cct 2478 2478 phylo (4,3,3) 25176035 497491 497491 SNP 1 c t coding Rv0411c glnH 498300 497314 987 - Asp 270 - Asp Asp270Asp gac/gat 810 810 phylo (2) 25176035 514245 514245 SNP 1 g a coding Rv0425c ctpH 515321 510702 4620 - Val 359 - Val Val359Val gtg/gta 1077 1077 phylo (4,1,1) 25176035 541048 541048 SNP 1 a c coding Rv0450c mmpL4 541491 538588 2904 - Ser 148 - Ser Ser148Ser tca/tcc 444 444 phylo (4,1,1,2) 25176035 615614 615614 SNP 1 c a coding Rv0524 hemL 614835 616223 1389 + Ala 260 - Ala Ala260Ala gcc/gca 780 780 phylo (4,3,1) 25176035 615938 615938 SNP 1 g a coding Rv0524 hemL 614835 616223 1389 + Glu 368 - Glu Glu368Glu gag/gaa 1104 1104 phylo (1) 25176035 762434 762434 SNP 1 t g coding Rv0667 rpoB 759807 763325 3519 + Gly 876 - Gly Gly876Gly ggt/ggg 2628 2628 phylo (3) 25176035 763031 763031 SNP 1 t c coding Rv0667 rpoB 759807 763325 3519 + Ala 1075 - Ala Ala1075Ala gct/gcc 3225 3225 phylo (4) 25176035 763884 763884 SNP 1 c t coding Rv0668 rpoC 763370 767320 3951 + Ala 172 - Val Ala172Val gcc/gtc 515 515 phylo (1) 25176035 763886 763886 SNP 1 c a coding Rv0668 rpoC 763370 767320 3951 + Arg 173 - Arg Arg173Arg cgg/agg 517 517 phylo (1) 25176035 764013 764013 SNP 1 a c coding Rv0668 rpoC 763370 767320 3951 + Glu 215 - Ala Glu215Ala gag/gcg 644 644 phylo (7) 25176035 764995 764995 SNP 1 c g coding Rv0668 rpoC 763370 767320 3951 + Ala 542 - Ala Ala542Ala gcc/gcg 1626 1626 phylo (4,3) 25176035 765150 765150 SNP 1 g a coding Rv0668 rpoC 763370 767320 3951 + Gly 594 - Glu Gly594Glu ggg/gag 1781 1781 phylo (4,1) 25176035 765171 765171 SNP 1 c t coding Rv0668 rpoC 763370 767320 3951 + Pro 601 - Leu Pro601Leu ccg/ctg 1802 1802 phylo (1,1) 25176035 765230 765230 SNP 1 g a coding Rv0668 rpoC 763370 767320 3951 + Ala 621 - Thr Ala621Thr gcg/acg 1861 1861 phylo (1,1,3) 25176035 766955 766955 SNP 1 g a coding Rv0668 rpoC 763370 767320 3951 + Glu 1196 - Lys Glu1196Lys gag/aag 3586 3586 phylo (7) 25176035 783601 783601 SNP 1 a c coding Rv0684 fusA1 782485 784590 2106 + Arg 373 - Arg Arg373Arg agg/cgg 1117 1117 phylo (4,2,1) 25176035 797736 797736 SNP 1 c t coding Rv0697 - 796933 798372 1440 + Leu 268 - Leu Leu268Leu ctc/ctt 804 804 phylo (2,2,1) 25176035 874787 874787 SNP 1 g a coding Rv0782 ptrBb 874732 876390 1659 + Arg 19 - Gln Arg19Gln cgg/cag 56 56 phylo (4,6,1,1) 25176035 891756 891756 SNP 1 t c coding Rv0798c cfp29 892269 891472 798 - Leu 172 - Leu Leu172Leu ttg/ctg 514 514 phylo (4,1,2) 25176035 931123 931123 SNP 1 t c coding Rv0835 lpqQ 930953 931597 645 + Tyr 57 - Tyr Tyr57Tyr tat/tac 171 171 phylo (not 4) 25176035 1084911 1084911 SNP 1 c t coding Rv0973c accA2 1085750 1083747 2004 - Tyr 280 - Tyr Tyr280Tyr tac/tat 840 840 phylo (3,1,1) 25176035 1132368 1132368 SNP 1 c t coding Rv1013 pks16 1131625 1133259 1635 + Thr 248 - Thr Thr248Thr acc/act 744 744 phylo (4,3,4,2) 25176035 1137518 1137518 SNP 1 c t coding Rv1018c glmU 1138060 1136573 1488 - Asn 181 - Asn Asn181Asn aac/aat 543 543 phylo (7) 25176035 1237818 1237818 SNP 1 g c coding Rv1111c - 1238192 1237209 984 - Leu 125 - Leu Leu125Leu ctg/ctc 375 375 phylo (3,1,2,1) 25176035 1416410 1416410 SNP 1 t g coding Rv1267c embR 1417347 1416181 1167 - Leu 313 - Arg Leu313Arg ctg/cgg 938 938 phylo (4,6,1,2) 25176035 1416702 1416702 SNP 1 t c coding Rv1267c embR 1417347 1416181 1167 - Tyr 216 - His Tyr216His tac/cac 646 646 phylo (4,6,2,1) 25176035 1416977 1416977 SNP 1 a g coding Rv1267c embR 1417347 1416181 1167 - His 124 - Arg His124Arg cac/cgc 371 371 phylo (7) 25176035 1417019 1417019 SNP 1 g a coding Rv1267c embR 1417347 1416181 1167 - Cys 110 - Tyr Cys110Tyr tgc/tac 329 329 phylo (1) 25176035 1455780 1455780 SNP 1 t c coding Rv1299 prfA 1455495 1456568 1074 + Leu 96 - Leu Leu96Leu ttg/ctg 286 286 phylo (4,2,2,1) 25176035 1472337 1472337 SNP 1 c t ribosomal Rvnr01 rrs 1471846 1473382 1537 + - - - - --- - 492 492 phylo (4,3,2) 25176035 1487796 1487796 SNP 1 c a coding Rv1324 - 1487161 1488075 915 + Ile 212 - Ile Ile212Ile atc/ata 636 636 phylo (4,2,2) 25176035 1491275 1491275 SNP 1 c t coding Rv1326c glgB 1492312 1490117 2196 - His 346 - His His346His cac/cat 1038 1038 phylo (1,1,3) 25176035 1501468 1501468 SNP 1 g c coding Rv1332 - 1500926 1501582 657 + Pro 181 - Pro Pro181Pro ccg/ccc 543 543 phylo (4,6,1,2) 25176035 1502120 1502120 SNP 1 c a coding Rv1333 - 1501599 1502633 1035 + Thr 174 - Thr Thr174Thr acc/aca 522 522 phylo (4,3,4,2,1) 25176035 1719757 1719757 SNP 1 g t coding Rv1524 - 1718726 1719970 1245 + Pro 344 - Pro Pro344Pro ccg/cct 1032 1032 phylo (4,5) 25176035 1759252 1759252 SNP 1 g t coding Rv1552 frdA 1757681 1759432 1752 + Ser 524 - Ser Ser524Ser tcg/tct 1572 1572 phylo (not 4,9) 25176035 1799921 1799921 SNP 1 c a coding Rv1599 hisD 1799583 1800899 1317 + Gly 113 - Gly Gly113Gly ggc/gga 339 339 phylo (5) 25176035 1816587 1816587 SNP 1 c g coding Rv1617 pykA 1816189 1817607 1419 + Val 133 - Val Val133Val gtc/gtg 399 399 phylo (6) 25176035 1834916 1834916 SNP 1 a c coding Rv1630 rpsA 1833542 1834987 1446 + Thr 459 - Pro Thr459Pro acc/ccc 1375 1375 phylo (7) 25176035 1850119 1850119 SNP 1 g a coding Rv1640c lysX 1852035 1848517 3519 - Thr 639 - Thr Thr639Thr acg/aca 1917 1917 phylo (4,1,1,1) 25176035 1881090 1881090 SNP 1 c t coding Rv1661 pks7 1875304 1881684 6381 + Gly 1929 - Gly Gly1929Gly ggc/ggt 5787 5787 phylo (2,1) 25176035 1882180 1882180 SNP 1 c t coding Rv1662 pks8 1881704 1886512 4809 + Ala 159 - Ala Ala159Ala gcc/gct 477 477 phylo (BOV_AFRI) 25176035 1918281 1918281 SNP 1 a c coding Rv1694 tlyA 1917940 1918746 807 + Gly 114 - Gly Gly114Gly gga/ggc 342 342 phylo (7) 25176035 2101921 2101921 SNP 1 g a coding Rv1854c ndh 2103042 2101651 1392 - Ser 374 - Ser Ser374Ser tcg/tca 1122 1122 phylo (5) 25176035 2102218 2102218 SNP 1 c t coding Rv1854c ndh 2103042 2101651 1392 - Val 275 - Val Val275Val gtc/gtt 825 825 phylo (7) 25176035 2102990 2102990 SNP 1 t c coding Rv1854c ndh 2103042 2101651 1392 - Val 18 - Ala Val18Ala gtg/gcg 53 53 phylo (4,4,1) 25176035 2155503 2155503 SNP 1 c t coding Rv1908c katG 2156111 2153889 2223 - Thr 203 - Thr Thr203Thr acc/act 609 609 phylo (BOV_AFRI) 25176035 2411730 2411730 SNP 1 c g coding Rv2152c murC 2412122 2410638 1485 - Ser 131 - Ser Ser131Ser tcc/tcg 393 393 phylo (4,2) 25176035 2505085 2505085 SNP 1 c t coding Rv2231c cobC 2505699 2504605 1095 - Ala 205 - Ala Ala205Ala gcc/gct 615 615 phylo (2,2) 25176035 2518919 2518919 SNP 1 g a coding Rv2245 kasA 2518115 2519365 1251 + Gly 269 - Ser Gly269Ser ggt/agt 805 805 phylo (4,3,3) 25176035 2622402 2622402 SNP 1 c t coding Rv2343c dnaG 2622452 2620533 1920 - Ala 17 - Ala Ala17Ala gcc/gct 51 51 phylo (1,1,2) 25176035 2694560 2694560 SNP 1 c g coding Rv2397c cysA1 2694964 2693909 1056 - Leu 135 - Leu Leu135Leu ctc/ctg 405 405 phylo (4,4,1,2) 25176035 2831482 2831482 SNP 1 t c coding Rv2515c - 2832591 2831344 1248 - Gly 370 - Gly Gly370Gly ggt/ggc 1110 1110 phylo (BOV) 25176035 2874344 2874344 SNP 1 c t coding Rv2555c alaS 2876485 2873771 2715 - Arg 714 - Arg Arg714Arg cgc/cgt 2142 2142 phylo (3,1,2,2) 25176035 2875883 2875883 SNP 1 g a coding Rv2555c alaS 2876485 2873771 2715 - Leu 201 - Leu Leu201Leu ctg/cta 603 603 phylo (4,6,2,2) 25176035 3021283 3021283 SNP 1 g a coding Rv2707 - 3020573 3021547 975 + Arg 237 - Arg Arg237Arg cgg/cga 711 711 phylo (1,1,1) 25176035 3216553 3216553 SNP 1 c t coding Rv2907c rimM 3216891 3216361 531 - Val 113 - Val Val113Val gtc/gtt 339 339 phylo (1,1,1,1) 25176035 3273107 3273107 SNP 1 c a coding Rv2936 drrA 3272214 3273209 996 + Ala 298 - Ala Ala298Ala gcc/gca 894 894 phylo (3) 25176035 3388166 3388166 SNP 1 g c coding Rv3029c fixA 3388870 3388070 801 - Thr 235 - Thr Thr235Thr acg/acc 705 705 phylo (4,3,2,1) 25176035 3466426 3466426 SNP 1 c t coding Rv3097c lipY 3467091 3465778 1314 - Val 222 - Val Val222Val gtc/gtt 666 666 phylo (4,6) 25176035 3470377 3470377 SNP 1 g a coding Rv3101c ftsX 3470679 3469786 894 - Gln 101 - Gln Gln101Gln cag/caa 303 303 phylo (1,2,2) 25176035 3479545 3479545 SNP 1 c a coding Rv3111 moaC1 3479171 3479683 513 + Ala 125 - Ala Ala125Ala gcc/gca 375 375 phylo (1,2,1) 25176035 3513538 3513538 SNP 1 a t coding Rv3148 nuoD 3513338 3514660 1323 + Glu 67 - Asp Glu67Asp gaa/gat 201 201 phylo (2,1) 25176035 3514512 3514512 SNP 1 g c coding Rv3148 nuoD 3513338 3514660 1323 + Gly 392 - Ala Gly392Ala ggt/gct 1175 1175 phylo (4,3,4,2) 25176035 3570528 3570528 SNP 1 g c coding Rv3198c uvrD2 3571211 3569109 2103 - Arg 228 - Arg Arg228Arg cgg/cgc 684 684 phylo (4,6,2,1) 25176035 3722702 3722702 SNP 1 c g coding Rv3336c trpS 3723631 3722621 1011 - Leu 310 - Leu Leu310Leu ctc/ctg 930 930 phylo (3,1,2) 25176035 3836274 3836274 SNP 1 c t coding Rv3417c groEL1 3836891 3835272 1620 - Phe 206 - Phe Phe206Phe ttc/ttt 618 618 phylo (2,2,1,2) 25176035 3836739 3836739 SNP 1 c t coding Rv3417c groEL1 3836891 3835272 1620 - Asp 51 - Asp Asp51Asp gac/gat 153 153 phylo (4,8) 25176035 3977226 3977226 SNP 1 g a coding Rv3538 - 3977062 3977922 861 + Leu 55 - Leu Leu55Leu ttg/tta 165 165 phylo (4,3,4) 25176035 4125058 4125058 SNP 1 g c coding Rv3683 - 4124417 4125376 960 + Arg 214 - Arg Arg214Arg cgg/cgc 642 642 phylo (4,6,2) 25176035 4151558 4151558 SNP 1 c t coding Rv3708c asd 4152217 4151180 1038 - Gly 220 - Gly Gly220Gly ggc/ggt 660 660 phylo (4,4,1) 25176035 4229087 4229087 SNP 1 c t coding Rv3782 glfT1 4228347 4229261 915 + Asn 247 - Asn Asn247Asn aac/aat 741 741 phylo (4,1,1,3) 25176035 4238120 4238120 SNP 1 g a coding Rv3792 aftA 4237932 4239863 1932 + Gln 63 - Gln Gln63Gln cag/caa 189 189 phylo (1,2,2) 25176035 4238778 4238778 SNP 1 g a coding Rv3792 aftA 4237932 4239863 1932 + Val 283 - Met Val283Met gtg/atg 847 847 phylo (7) 25176035 4238963 4238963 SNP 1 c t coding Rv3792 aftA 4237932 4239863 1932 + His 344 - His His344His cac/cat 1032 1032 phylo (4,4) 25176035 4239298 4239298 SNP 1 c t coding Rv3792 aftA 4237932 4239863 1932 + Ala 456 - Val Ala456Val gcc/gtc 1367 1367 phylo (4,1,2,1) 25176035 4239843 4239843 SNP 1 a c coding Rv3792 aftA 4237932 4239863 1932 + Lys 638 - Gln Lys638Gln aag/cag 1912 1912 phylo (5) 25176035 4240153 4240153 SNP 1 g a coding Rv3793 embC 4239863 4243147 3285 + Ser 97 - Ser Ser97Ser tcg/tca 291 291 phylo (7) 25176035 4240897 4240897 SNP 1 c g coding Rv3793 embC 4239863 4243147 3285 + Arg 345 - Arg Arg345Arg cgc/cgg 1035 1035 phylo (4,1,1,1) 25176035 4241042 4241042 SNP 1 a g coding Rv3793 embC 4239863 4243147 3285 + Asn 394 - Asp Asn394Asp aac/gac 1180 1180 phylo (1) 25176035 4241562 4241562 SNP 1 g a coding Rv3793 embC 4239863 4243147 3285 + Arg 567 - His Arg567His cgc/cac 1700 1700 phylo (3,1,1) 25176035 4242643 4242643 SNP 1 c t coding Rv3793 embC 4239863 4243147 3285 + Arg 927 - Arg Arg927Arg cgc/cgt 2781 2781 phylo (4,9) 25176035 4242883 4242883 SNP 1 c t coding Rv3793 embC 4239863 4243147 3285 + Pro 1007 - Pro Pro1007Pro ccc/cct 3021 3021 phylo (4,6,2,1) 25176035 4243848 4243848 SNP 1 g a coding Rv3794 embA 4243233 4246517 3285 + Val 206 - Met Val206Met gtg/atg 616 616 phylo (1,1) 25176035 4244420 4244420 SNP 1 g c coding Rv3794 embA 4243233 4246517 3285 + Val 396 - Val Val396Val gtg/gtc 1188 1188 phylo (1,2,1) 25176035 4245055 4245055 SNP 1 c a coding Rv3794 embA 4243233 4246517 3285 + Thr 608 - Asn Thr608Asn acc/aac 1823 1823 phylo (4,6,1,2) 25176035 4245969 4245969 SNP 1 c t coding Rv3794 embA 4243233 4246517 3285 + Pro 913 - Ser Pro913Ser ccg/tcg 2737 2737 phylo (1) 25176035 4246088 4246088 SNP 1 a g coding Rv3794 embA 4243233 4246517 3285 + Gln 952 - Gln Gln952Gln caa/cag 2856 2856 phylo (2,1) 25176035 4246508 4246508 SNP 1 g a coding Rv3794 embA 4243233 4246517 3285 + Ala 1092 - Ala Ala1092Ala gcg/gca 3276 3276 phylo (4,4,2) 25176035 4246864 4246864 SNP 1 c t coding Rv3795 embB 4246514 4249810 3297 + Val 117 - Val Val117Val gtc/gtt 351 351 phylo (BOV_AFRI) 25176035 4246930 4246930 SNP 1 g c coding Rv3795 embB 4246514 4249810 3297 + Gln 139 - His Gln139His cag/cac 417 417 phylo (4,1,1,2) 25176035 4248073 4248073 SNP 1 c t coding Rv3795 embB 4246514 4249810 3297 + Thr 520 - Thr Thr520Thr acc/act 1560 1560 phylo (7) 25176035 4248115 4248115 SNP 1 c t coding Rv3795 embB 4246514 4249810 3297 + Asp 534 - Asp Asp534Asp gac/gat 1602 1602 phylo (2,2,1,1) 25176035 4249012 4249012 SNP 1 g a coding Rv3795 embB 4246514 4249810 3297 + Leu 833 - Leu Leu833Leu ctg/cta 2499 2499 phylo (4,4,1,2) 25176035 4249732 4249732 SNP 1 c g coding Rv3795 embB 4246514 4249810 3297 + Ala 1073 - Ala Ala1073Ala gcc/gcg 3219 3219 phylo (4,7) 25176035 4260268 4260268 SNP 1 c g coding Rv3800c pks13 4261146 4255945 5202 - Ala 293 - Ala Ala293Ala gcc/gcg 879 879 phylo (4,6,1) 25176035 4268928 4268928 SNP 1 c t coding Rv3806c ubiA 4269833 4268925 909 - Gly 302 - Gly Gly302Gly ggc/ggt 906 906 phylo (4,4,2) 25176035 4269351 4269351 SNP 1 c t coding Rv3806c ubiA 4269833 4268925 909 - Ala 161 - Ala Ala161Ala gcc/gct 483 483 phylo (BOV_AFRI) 25176035 4269375 4269375 SNP 1 g a coding Rv3806c ubiA 4269833 4268925 909 - Val 153 - Val Val153Val gtg/gta 459 459 phylo (4,4,2) 25176035 4307886 4307886 SNP 1 c t coding Rv3834c serS 4308914 4307655 1260 - Arg 343 - Arg Arg343Arg cgc/cgt 1029 1029 phylo (4,4) 25176035 4316114 4316114 SNP 1 c t coding Rv3843c - 4316596 4315568 1029 - Ala 161 - Ala Ala161Ala gcc/gct 483 483 phylo (4,3,2) 25176035 4326176 4326176 SNP 1 a c coding Rv3854c ethA 4327473 4326004 1470 - Glu 433 - Ala Glu433Ala gag/gcg 1298 1298 phylo (3,1,2,2) 25176035 4326439 4326439 SNP 1 c a coding Rv3854c ethA 4327473 4326004 1470 - Asn 345 - Lys Asn345Lys aac/aaa 1035 1035 phylo (1,2,2) 25176035 4326739 4326739 SNP 1 c g coding Rv3854c ethA 4327473 4326004 1470 - Arg 245 - Arg Arg245Arg cgc/cgg 735 735 phylo (4,6,2,2) 25176035 4328004 4328004 SNP 1 g a coding Rv3855 ethR 4327549 4328199 651 + Val 152 - Val Val152Val gtg/gta 456 456 phylo (4,6,2,2) 25176035 4398141 4398141 SNP 1 g a coding Rv3910 - 4396597 4400151 3555 + Ser 515 - Ser Ser515Ser tcg/tca 1545 1545 phylo (4,3,4,1) 25176035 4404247 4404247 SNP 1 g a coding Rv3915 - 4403192 4404412 1221 + Leu 352 - Leu Leu352Leu ctg/cta 1056 1056 phylo (1,1) 25176035 4407780 4407780 SNP 1 g a coding Rv3919c gid 4408202 4407528 675 - Ala 141 - Ala Ala141Ala gcg/gca 423 423 phylo (1,1,3) 25176035