Genetic diversity increases with depth in red gorgonian populations of the Mediterranean Sea and the Atlantic Ocean Joanna Pilczynska, Silvia Cocito, Joana R. H. Boavida, Ester A. Serr‹o, Jorge M. Assis, Eliza Fragkopoulou, Henrique Queiroga S3. Summary of recent bottleneck tests (heterozygosity excess) performed with the software Bottleneck Version 1.2.02 (16.II.99) # -------------------------------------------------------------------------------- Genetics\Pc_Genetics.gen Data type: Genepop format Estimation based on 1000 replications. Date: 16-01-2019 Time: 10:09:49. Population : Espichel (deep) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 64 10 0.789 | 0.815 0.050 -0.533 0.2410 | 0.853 0.031 -2.069 0.0460 Parcla10 64 11 0.869 | 0.837 0.044 0.716 0.2610 | 0.869 0.027 -0.012 0.4280 Parcla14 64 15 0.904 | 0.891 0.026 0.515 0.3700 | 0.910 0.019 -0.325 0.3010 Parcla17 64 9 0.721 | 0.791 0.062 -1.137 0.1140 | 0.834 0.036 -3.111 0.0140 Par_d 64 5 0.658 | 0.621 0.116 0.318 0.4610 | 0.683 0.082 -0.305 0.2940 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.99 2 loci with heterozygosity deficiency and 3 loci with heterozygosity excess. Probability: 0.67774 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.97 5 loci with heterozygosity deficiency and 0 loci with heterozygosity excess. Probability: 0.01116 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -0.054 Probability: 0.47854 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -2.604 Probability: 0.00461 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.50000 Probability (one tail for H excess): 0.59375 Probability (two tails for H excess or deficiency): 1.00000 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.01563 Probability (one tail for H excess): 1.00000 Probability (two tails for H excess or deficiency): 0.03125 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.680 | 0.180 | 0.080 | 0.020 | 0.020 | 0.020 | 0.000 | 0.000 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:10:31. Population : Espichel (shallow) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 144 17 0.730 | 0.882 0.028 -5.441 0.0000 | 0.910 0.016 -11.564 0.0000 Parcla10 144 10 0.366 | 0.781 0.063 -6.599 0.0000 | 0.837 0.035 -13.632 0.0000 Parcla14 144 17 0.894 | 0.880 0.030 0.456 0.3850 | 0.909 0.027 -0.569 0.1470 Parcla17 144 7 0.720 | 0.687 0.097 0.343 0.4540 | 0.762 0.059 -0.691 0.1940 Par_d 144 10 0.710 | 0.782 0.061 -1.180 0.1170 | 0.838 0.033 -3.843 0.0040 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.97 3 loci with heterozygosity deficiency and 2 loci with heterozygosity excess. Probability: 0.32681 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.97 5 loci with heterozygosity deficiency and 0 loci with heterozygosity excess. Probability: 0.01098 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -5.555 Probability: 0.00000 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -13.551 Probability: 0.00000 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.07813 Probability (one tail for H excess): 0.95313 Probability (two tails for H excess or deficiency): 0.15625 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.01563 Probability (one tail for H excess): 1.00000 Probability (two tails for H excess or deficiency): 0.03125 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.721 | 0.197 | 0.000 | 0.016 | 0.049 | 0.000 | 0.000 | 0.016 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:12:26. Population : Sagres (deep) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 20 8 0.826 | 0.853 0.039 -0.668 0.2170 | 0.865 0.032 -1.223 0.1330 Parcla10 20 3 0.195 | 0.497 0.132 -2.294 0.0450 | 0.536 0.119 -2.875 0.0240 Parcla14 20 3 0.353 | 0.502 0.136 -1.102 0.1970 | 0.531 0.118 -1.506 0.1070 Parcla17 20 4 0.742 | 0.631 0.103 1.079 0.1020 | 0.658 0.088 0.951 0.1460 Par_d 20 5 0.679 | 0.712 0.078 -0.422 0.2890 | 0.737 0.068 -0.861 0.1810 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.95 4 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.09409 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 3.00 4 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.08685 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -1.524 Probability: 0.06376 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -2.466 Probability: 0.00683 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.07813 Probability (one tail for H excess): 0.95313 Probability (two tails for H excess or deficiency): 0.15625 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.04688 Probability (one tail for H excess): 0.96875 Probability (two tails for H excess or deficiency): 0.09375 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.304 | 0.348 | 0.043 | 0.130 | 0.043 | 0.043 | 0.000 | 0.000 | 0.043 | 0.043 | shifted mode # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:12:49. Population : Sagres (shallow) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 8 3 0.464 | 0.623 0.093 -1.708 0.2060 | 0.639 0.087 -2.005 0.1470 Parcla10 0 0 0.000 MONOMORPHIC LOCUS. Parcla14 34 7 0.496 | 0.769 0.064 -4.287 0.0040 | 0.804 0.045 -6.877 0.0000 Parcla17 36 4 0.684 | 0.569 0.125 0.919 0.1840 | 0.627 0.093 0.612 0.3200 Par_d 10 3 0.378 | 0.586 0.110 -1.887 0.1520 | 0.608 0.097 -2.385 0.0840 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.33 3 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.19750 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.30 3 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.20771 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 4 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -3.482 Probability: 0.00025 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -5.327 Probability: 0.00000 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.06250 Probability (one tail for H excess): 0.96875 Probability (two tails for H excess or deficiency): 0.12500 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.06250 Probability (one tail for H excess): 0.96875 Probability (two tails for H excess or deficiency): 0.12500 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.353 | 0.294 | 0.059 | 0.059 | 0.059 | 0.000 | 0.000 | 0.118 | 0.059 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:13:43. Population : Berlengas (deeper) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 60 6 0.645 | 0.689 0.092 -0.485 0.2490 | 0.740 0.063 -1.517 0.0840 Parcla10 58 7 0.718 | 0.727 0.084 -0.108 0.3560 | 0.778 0.055 -1.084 0.1180 Parcla14 58 8 0.821 | 0.767 0.068 0.796 0.2000 | 0.816 0.039 0.127 0.4660 Parcla17 60 6 0.737 | 0.684 0.095 0.554 0.3350 | 0.741 0.066 -0.058 0.3880 Par_d 44 4 0.555 | 0.549 0.137 0.043 0.4220 | 0.608 0.106 -0.501 0.2420 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.98 2 loci with heterozygosity deficiency and 3 loci with heterozygosity excess. Probability: 0.67702 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.98 4 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.08983 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: 0.358 Probability: 0.36025 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -1.356 Probability: 0.08753 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.89063 Probability (one tail for H excess): 0.31250 Probability (two tails for H excess or deficiency): 0.62500 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.04688 Probability (one tail for H excess): 0.96875 Probability (two tails for H excess or deficiency): 0.09375 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.516 | 0.194 | 0.065 | 0.097 | 0.065 | 0.065 | 0.000 | 0.000 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:14:13. Population : Berlengas (shallow) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 52 6 0.765 | 0.689 0.096 0.796 0.2200 | 0.742 0.064 0.373 0.4220 Parcla10 54 2 0.507 | 0.228 0.165 1.689 0.0470 | 0.251 0.168 1.520 0.0540 Parcla14 54 8 0.813 | 0.770 0.068 0.640 0.2970 | 0.816 0.041 -0.064 0.4010 Parcla17 56 5 0.808 | 0.626 0.112 1.624 0.0020 | 0.689 0.080 1.492 0.0030 Par_d 54 2 0.283 | 0.243 0.163 0.243 0.4300 | 0.251 0.167 0.189 0.4440 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.73 0 loci with heterozygosity deficiency and 5 loci with heterozygosity excess. Probability: 0.04644 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.76 1 loci with heterozygosity deficiency and 4 loci with heterozygosity excess. Probability: 0.25606 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: 2.232 Probability: 0.01279 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: 1.570 Probability: 0.05817 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 1.00000 Probability (one tail for H excess): 0.01563 Probability (two tails for H excess or deficiency): 0.03125 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.98438 Probability (one tail for H excess): 0.03125 Probability (two tails for H excess or deficiency): 0.06250 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.261 | 0.304 | 0.217 | 0.087 | 0.043 | 0.043 | 0.000 | 0.000 | 0.043 | 0.000 | shifted mode # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:15:40. Population : P Punta Mesco (shallow) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 58 6 0.788 | 0.680 0.098 1.109 0.0800 | 0.742 0.066 0.706 0.2450 Parcla10 54 10 0.827 | 0.825 0.049 0.055 0.4290 | 0.858 0.028 -1.083 0.1260 Parcla14 56 4 0.707 | 0.535 0.138 1.251 0.0460 | 0.605 0.103 0.997 0.1130 Parcla17 60 4 0.466 | 0.537 0.140 -0.507 0.2580 | 0.601 0.102 -1.316 0.1120 Par_d 52 3 0.669 | 0.428 0.162 1.485 0.0120 | 0.480 0.135 1.399 0.0250 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.98 1 loci with heterozygosity deficiency and 4 loci with heterozygosity excess. Probability: 0.32905 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.99 2 loci with heterozygosity deficiency and 3 loci with heterozygosity excess. Probability: 0.67920 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: 1.517 Probability: 0.06462 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: 0.314 Probability: 0.37665 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.96875 Probability (one tail for H excess): 0.04688 Probability (two tails for H excess or deficiency): 0.09375 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.59375 Probability (one tail for H excess): 0.50000 Probability (two tails for H excess or deficiency): 1.00000 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.370 | 0.222 | 0.222 | 0.148 | 0.000 | 0.000 | 0.000 | 0.037 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:16:08. Population : P Punta Mesco (deeper) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 58 7 0.795 | 0.734 0.080 0.757 0.2260 | 0.782 0.051 0.251 0.4880 Parcla10 60 13 0.840 | 0.872 0.034 -0.954 0.1480 | 0.894 0.025 -2.212 0.0260 Parcla14 60 8 0.755 | 0.765 0.070 -0.142 0.3520 | 0.813 0.043 -1.318 0.0870 Parcla17 60 4 0.476 | 0.534 0.142 -0.403 0.2760 | 0.601 0.104 -1.191 0.1030 Par_d 54 4 0.733 | 0.540 0.135 1.424 0.0230 | 0.610 0.102 1.209 0.0530 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.98 3 loci with heterozygosity deficiency and 2 loci with heterozygosity excess. Probability: 0.32332 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.93 3 loci with heterozygosity deficiency and 2 loci with heterozygosity excess. Probability: 0.34012 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: 0.305 Probability: 0.38003 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -1.458 Probability: 0.07243 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.59375 Probability (one tail for H excess): 0.50000 Probability (two tails for H excess or deficiency): 1.00000 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.10938 Probability (one tail for H excess): 0.92188 Probability (two tails for H excess or deficiency): 0.21875 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.583 | 0.139 | 0.139 | 0.083 | 0.028 | 0.000 | 0.000 | 0.028 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:16:47. Population : Livorno (shallow) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 50 8 0.751 | 0.780 0.062 -0.463 0.2610 | 0.815 0.045 -1.437 0.0800 Parcla10 50 9 0.773 | 0.807 0.055 -0.622 0.2150 | 0.841 0.033 -2.041 0.0470 Parcla14 50 9 0.814 | 0.808 0.053 0.103 0.4580 | 0.843 0.031 -0.940 0.1640 Parcla17 50 6 0.785 | 0.691 0.095 0.995 0.1130 | 0.747 0.065 0.591 0.3200 Par_d 48 3 0.467 | 0.425 0.161 0.260 0.4910 | 0.481 0.132 -0.105 0.3710 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.97 2 loci with heterozygosity deficiency and 3 loci with heterozygosity excess. Probability: 0.67326 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.99 4 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.08788 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: 0.122 Probability: 0.45137 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -1.758 Probability: 0.03940 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.59375 Probability (one tail for H excess): 0.50000 Probability (two tails for H excess or deficiency): 1.00000 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.04688 Probability (one tail for H excess): 0.96875 Probability (two tails for H excess or deficiency): 0.09375 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.514 | 0.229 | 0.057 | 0.143 | 0.029 | 0.000 | 0.029 | 0.000 | 0.000 | 0.000 | normal L-shaped distribution Date: 16-01-2019 Time: 10:17:18. Population : Livorno (deeper) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 58 8 0.757 | 0.769 0.065 -0.170 0.3450 | 0.811 0.047 -1.159 0.1070 Parcla10 58 11 0.751 | 0.843 0.041 -2.213 0.0360 | 0.871 0.025 -4.738 0.0000 Parcla14 58 10 0.800 | 0.821 0.050 -0.419 0.2560 | 0.856 0.028 -1.942 0.0530 Parcla17 60 5 0.710 | 0.619 0.115 0.784 0.2340 | 0.683 0.081 0.328 0.4420 Par_d 58 3 0.492 | 0.406 0.161 0.533 0.3890 | 0.477 0.132 0.116 0.4410 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.94 3 loci with heterozygosity deficiency and 2 loci with heterozygosity excess. Probability: 0.33964 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.97 3 loci with heterozygosity deficiency and 2 loci with heterozygosity excess. Probability: 0.32889 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -0.664 Probability: 0.25331 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -3.307 Probability: 0.00047 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.50000 Probability (one tail for H excess): 0.59375 Probability (two tails for H excess or deficiency): 1.00000 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.07813 Probability (one tail for H excess): 0.95313 Probability (two tails for H excess or deficiency): 0.15625 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.595 | 0.162 | 0.054 | 0.108 | 0.054 | 0.000 | 0.027 | 0.000 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:17:52. Population : Pota Del Llop (Medes Islands, Spain) (shallow) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 54 11 0.891 | 0.846 0.040 1.136 0.0660 | 0.873 0.025 0.710 0.2600 Parcla10 54 13 0.888 | 0.876 0.032 0.393 0.4340 | 0.898 0.022 -0.453 0.2530 Parcla14 54 14 0.913 | 0.888 0.027 0.938 0.1370 | 0.907 0.021 0.310 0.4470 Parcla17 54 6 0.720 | 0.689 0.093 0.332 0.4390 | 0.741 0.067 -0.315 0.2860 Par_d 54 4 0.435 | 0.540 0.138 -0.762 0.2080 | 0.605 0.104 -1.632 0.0790 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.93 1 loci with heterozygosity deficiency and 4 loci with heterozygosity excess. Probability: 0.31217 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.95 3 loci with heterozygosity deficiency and 2 loci with heterozygosity excess. Probability: 0.33622 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: 0.911 Probability: 0.18111 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -0.617 Probability: 0.26848 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.95313 Probability (one tail for H excess): 0.07813 Probability (two tails for H excess or deficiency): 0.15625 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.31250 Probability (one tail for H excess): 0.89063 Probability (two tails for H excess or deficiency): 0.62500 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.667 | 0.188 | 0.104 | 0.000 | 0.021 | 0.000 | 0.000 | 0.021 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:18:36. Population : Pota Del Llop (Medes Islands, Spain) (deeper) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 54 13 0.885 | 0.876 0.031 0.294 0.4760 | 0.897 0.020 -0.571 0.2550 Parcla10 54 15 0.913 | 0.899 0.024 0.554 0.3340 | 0.916 0.014 -0.209 0.3750 Parcla14 54 18 0.911 | 0.919 0.036 -0.233 0.2020 | 0.934 0.013 -1.768 0.0390 Parcla17 54 5 0.644 | 0.626 0.109 0.164 0.5080 | 0.686 0.080 -0.524 0.2440 Par_d 54 3 0.237 | 0.424 0.158 -1.182 0.1700 | 0.474 0.140 -1.691 0.0940 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 3.03 2 loci with heterozygosity deficiency and 3 loci with heterozygosity excess. Probability: 0.65213 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.97 5 loci with heterozygosity deficiency and 0 loci with heterozygosity excess. Probability: 0.01103 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -0.180 Probability: 0.42865 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -2.130 Probability: 0.01657 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.59375 Probability (one tail for H excess): 0.50000 Probability (two tails for H excess or deficiency): 1.00000 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.01563 Probability (one tail for H excess): 1.00000 Probability (two tails for H excess or deficiency): 0.03125 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.759 | 0.148 | 0.056 | 0.000 | 0.000 | 0.019 | 0.000 | 0.000 | 0.019 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:19:54. Population : Pharillons (Marseille, France) (shallow) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 54 9 0.864 | 0.805 0.054 1.085 0.0670 | 0.839 0.035 0.717 0.2690 Parcla10 20 8 0.821 | 0.853 0.038 -0.856 0.1840 | 0.866 0.031 -1.443 0.0850 Parcla14 54 14 0.913 | 0.889 0.027 0.883 0.1820 | 0.907 0.018 0.311 0.4470 Parcla17 54 5 0.412 | 0.625 0.114 -1.870 0.0570 | 0.682 0.085 -3.172 0.0150 Par_d 48 4 0.533 | 0.552 0.130 -0.148 0.3520 | 0.614 0.099 -0.819 0.1710 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.93 3 loci with heterozygosity deficiency and 2 loci with heterozygosity excess. Probability: 0.34360 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.94 3 loci with heterozygosity deficiency and 2 loci with heterozygosity excess. Probability: 0.33793 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -0.406 Probability: 0.34255 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -1.970 Probability: 0.02439 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.50000 Probability (one tail for H excess): 0.59375 Probability (two tails for H excess or deficiency): 1.00000 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.07813 Probability (one tail for H excess): 0.95313 Probability (two tails for H excess or deficiency): 0.15625 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.550 | 0.325 | 0.050 | 0.000 | 0.025 | 0.000 | 0.025 | 0.025 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:20:35. Population : Pharillons (Marseille, France) (deeper) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 56 11 0.853 | 0.846 0.043 0.171 0.4770 | 0.873 0.025 -0.813 0.2010 Parcla10 56 17 0.898 | 0.914 0.020 -0.791 0.1820 | 0.927 0.017 -1.682 0.0290 Parcla14 56 16 0.918 | 0.907 0.022 0.481 0.3690 | 0.921 0.017 -0.206 0.3490 Parcla17 56 6 0.701 | 0.687 0.095 0.148 0.4760 | 0.738 0.065 -0.561 0.2340 Par_d 56 4 0.562 | 0.540 0.136 0.158 0.4730 | 0.607 0.100 -0.452 0.2650 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.99 1 loci with heterozygosity deficiency and 4 loci with heterozygosity excess. Probability: 0.33345 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.93 5 loci with heterozygosity deficiency and 0 loci with heterozygosity excess. Probability: 0.01218 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: 0.075 Probability: 0.47005 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -1.661 Probability: 0.04840 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.89063 Probability (one tail for H excess): 0.31250 Probability (two tails for H excess or deficiency): 0.62500 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.01563 Probability (one tail for H excess): 1.00000 Probability (two tails for H excess or deficiency): 0.03125 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.722 | 0.167 | 0.074 | 0.000 | 0.000 | 0.019 | 0.019 | 0.000 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:21:30. Population : Grotte Peres (Marseille, France) (shallow) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 58 8 0.728 | 0.763 0.071 -0.490 0.2480 | 0.815 0.039 -2.223 0.0320 Parcla10 58 12 0.892 | 0.858 0.037 0.919 0.1440 | 0.883 0.024 0.375 0.4290 Parcla14 58 14 0.825 | 0.886 0.028 -2.203 0.0400 | 0.905 0.017 -4.847 0.0000 Parcla17 58 6 0.455 | 0.685 0.095 -2.431 0.0310 | 0.741 0.066 -4.323 0.0040 Par_d 58 5 0.520 | 0.621 0.117 -0.861 0.1660 | 0.687 0.081 -2.059 0.0450 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.96 4 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.09380 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.95 4 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.09454 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -2.266 Probability: 0.01172 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -5.848 Probability: 0.00000 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.07813 Probability (one tail for H excess): 0.95313 Probability (two tails for H excess or deficiency): 0.15625 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.03125 Probability (one tail for H excess): 0.98438 Probability (two tails for H excess or deficiency): 0.06250 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.644 | 0.222 | 0.022 | 0.067 | 0.000 | 0.000 | 0.022 | 0.022 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:22:13. Population : Grotte Peres (Marseille, France) (deeper) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 76 13 0.806 | 0.862 0.033 -1.706 0.0670 | 0.890 0.020 -4.201 0.0030 Parcla10 76 13 0.891 | 0.860 0.038 0.804 0.2070 | 0.889 0.021 0.078 0.4700 Parcla14 76 19 0.915 | 0.918 0.016 -0.144 0.3750 | 0.930 0.014 -1.044 0.1020 Parcla17 76 6 0.544 | 0.675 0.093 -1.405 0.0840 | 0.734 0.065 -2.924 0.0160 Par_d 76 6 0.577 | 0.670 0.100 -0.928 0.1610 | 0.737 0.065 -2.459 0.0340 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.96 4 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.09376 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.91 4 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.10124 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -1.511 Probability: 0.06541 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -4.718 Probability: 0.00000 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.04688 Probability (one tail for H excess): 0.96875 Probability (two tails for H excess or deficiency): 0.09375 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.03125 Probability (one tail for H excess): 0.98438 Probability (two tails for H excess or deficiency): 0.06250 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.754 | 0.158 | 0.035 | 0.018 | 0.000 | 0.000 | 0.035 | 0.000 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:23:09. Population : Petit Congloue (Marseille, France) (shallow) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 66 10 0.838 | 0.817 0.049 0.433 0.3910 | 0.854 0.029 -0.578 0.2390 Parcla10 66 18 0.913 | 0.915 0.019 -0.081 0.3950 | 0.928 0.017 -0.889 0.1170 Parcla14 66 16 0.917 | 0.901 0.022 0.748 0.2520 | 0.916 0.015 0.068 0.4790 Parcla17 66 5 0.555 | 0.613 0.115 -0.503 0.2620 | 0.685 0.080 -1.621 0.0670 Par_d 66 5 0.690 | 0.615 0.116 0.647 0.2930 | 0.674 0.086 0.178 0.4890 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.95 2 loci with heterozygosity deficiency and 3 loci with heterozygosity excess. Probability: 0.66554 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.95 3 loci with heterozygosity deficiency and 2 loci with heterozygosity excess. Probability: 0.33478 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: 0.556 Probability: 0.28917 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -1.271 Probability: 0.10185 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.92188 Probability (one tail for H excess): 0.10938 Probability (two tails for H excess or deficiency): 0.21875 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.07813 Probability (one tail for H excess): 0.95313 Probability (two tails for H excess or deficiency): 0.15625 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.704 | 0.204 | 0.056 | 0.000 | 0.000 | 0.019 | 0.019 | 0.000 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:23:58. Population : Petit Congloue (Marseille, France) (deeper) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 54 8 0.787 | 0.774 0.062 0.201 0.5120 | 0.813 0.042 -0.634 0.2180 Parcla10 34 16 0.943 | 0.933 0.019 0.547 0.2990 | 0.939 0.011 0.352 0.4610 Parcla14 54 14 0.901 | 0.890 0.026 0.450 0.3850 | 0.908 0.016 -0.391 0.2990 Parcla17 54 6 0.442 | 0.691 0.095 -2.633 0.0260 | 0.744 0.063 -4.818 0.0020 Par_d 54 5 0.630 | 0.623 0.113 0.057 0.4260 | 0.688 0.084 -0.700 0.1960 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.97 1 loci with heterozygosity deficiency and 4 loci with heterozygosity excess. Probability: 0.32800 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.98 4 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.09011 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -0.617 Probability: 0.26878 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -2.769 Probability: 0.00281 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.89063 Probability (one tail for H excess): 0.31250 Probability (two tails for H excess or deficiency): 0.62500 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.03125 Probability (one tail for H excess): 0.98438 Probability (two tails for H excess or deficiency): 0.06250 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.714 | 0.184 | 0.041 | 0.020 | 0.000 | 0.020 | 0.000 | 0.020 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:25:02. Population : Riou Sud (Marseille, France) (shallow) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 62 12 0.881 | 0.855 0.037 0.713 0.2500 | 0.882 0.025 -0.040 0.3980 Parcla10 62 16 0.911 | 0.902 0.023 0.358 0.4510 | 0.918 0.015 -0.469 0.2620 Parcla14 62 18 0.934 | 0.918 0.019 0.846 0.1860 | 0.929 0.018 0.270 0.4540 Parcla17 62 5 0.543 | 0.621 0.115 -0.680 0.2050 | 0.682 0.082 -1.688 0.0620 Par_d 62 5 0.455 | 0.619 0.120 -1.364 0.1030 | 0.680 0.085 -2.654 0.0240 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.97 2 loci with heterozygosity deficiency and 3 loci with heterozygosity excess. Probability: 0.67357 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.98 4 loci with heterozygosity deficiency and 1 loci with heterozygosity excess. Probability: 0.09059 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -0.057 Probability: 0.47735 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -2.049 Probability: 0.02025 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.59375 Probability (one tail for H excess): 0.50000 Probability (two tails for H excess or deficiency): 1.00000 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.04688 Probability (one tail for H excess): 0.96875 Probability (two tails for H excess or deficiency): 0.09375 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.732 | 0.214 | 0.018 | 0.000 | 0.000 | 0.000 | 0.018 | 0.018 | 0.000 | 0.000 | normal L-shaped distribution # -------------------------------------------------------------------------------- Date: 16-01-2019 Time: 10:25:59. Population : Riou Sud (Marseille, France) (deeper) observed | under the T.P.M. | under the S.M.M. locus n ko He | Heq S.D. DH/sd Prob | Heq S.D. DH/sd Prob Parcla09 52 13 0.870 | 0.879 0.032 -0.270 0.3030 | 0.898 0.019 -1.459 0.0890 Parcla10 52 16 0.885 | 0.910 0.021 -1.185 0.1180 | 0.924 0.014 -2.830 0.0140 Parcla14 52 16 0.914 | 0.910 0.020 0.186 0.5220 | 0.923 0.017 -0.531 0.1950 Parcla17 52 5 0.636 | 0.633 0.110 0.025 0.4330 | 0.690 0.077 -0.714 0.2010 Par_d 52 4 0.389 | 0.552 0.124 -1.311 0.1190 | 0.602 0.101 -2.109 0.0420 # ------------------------ SIGN TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.96 3 loci with heterozygosity deficiency and 2 loci with heterozygosity excess. Probability: 0.33060 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Expected number of loci with heterozygosity excess: 2.93 5 loci with heterozygosity deficiency and 0 loci with heterozygosity excess. Probability: 0.01221 # ------------------------ STANDARDIZED DIFFERENCES TEST Caution: only 5 polymorphic loci (minimum 20). Assumptions: all loci fit T.P.M., mutation-drift equilibrium. T2: -1.143 Probability: 0.12659 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. T2: -3.418 Probability: 0.00032 # ------------------------ WILCOXON TEST Assumptions: all loci fit T.P.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.07813 Probability (one tail for H excess): 0.95313 Probability (two tails for H excess or deficiency): 0.15625 Assumptions: all loci fit S.M.M., mutation-drift equilibrium. Probability (one tail for H deficiency): 0.01563 Probability (one tail for H excess): 1.00000 Probability (two tails for H excess or deficiency): 0.03125 # ------------------------ MODE-SHIFT 0.0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 | 0.759 | 0.130 | 0.056 | 0.019 | 0.000 | 0.019 | 0.000 | 0.019 | 0.000 | 0.000 | normal L-shaped distribution