Reviewer,Bib_Numbe,Number,Author,Journal,Year,Outside_Scope,Review,Host,Host_SN,Other_Host,Other_SN,Parasite,Parasite_SN,Result,Rejected_Why,Other,Full_Review,
Leah,,124,Alexander et al,J of Theoretical Biology,2009,No,Not Review,Human,,No,,Viral,Influenza,how does model assumptions/structure influence predictions of emergence of drug resistance,No data,,No,
Lauren,,75,Alizon,Retrovirology,2013,No,Not Review,Human,,No,,Viral,HIV,genome-wide overview of the differences in the HIV rates of molecular evolution at the within- and between-host levels.,Other,not really modeling disease dynamics. estimating evolutionary rates; different kind of model study,Yes,
Lauren,,113,Alizon,Trends in Microbiology,2011,No,Review,,,,,,,,Review,,,
Lauren,,201,Alizon,Proceedings of the Royal Society B,2011,No,Not Review,Other,inspired by siderophore producing bacteria,,,Other,general parastie,,No data,,,
Melody,,202,Alizon,American Naturalist,2008,No,Review,,,,,,,,Review,,,
Sarah,,135,Antolin,Annual Review of Ecology Evolution and Systematics,2008,No,Not Review,Non-human mammal,,Yes,Human,Bacterial,Yersinia pestis,,No model,,Yes,
Ryan,,56,Artzy-Randrup,Theor Ecol,2014,No,Not Review,Human,Homo sapiens,No,,Protozoa (Malaria parasite/etc),Plasmodium faciparum (malaria),Evolution of acute vs chronic traits during infections,No data,,Yes,
Fadoua,,203,Ashby,Evolution Letters,2017,No,Not Review,Other,general host,,,Other,general parasite,,No data,,,
Fadoua,,148,"Bedhomme, S",Proceedings of the royal society b-biological sciences,2004,No,Not Review,Invertebrates (Insects/snails/worms/etc),mosquito Aedes Aegypti,No,,Fungal,Vavraia culicis,,No model,,No,
Ryan,,159,Beegle,J Invertebrate Pathol,1975,Yes,Not Review,,,,,,,,Out of Scope,,,
Leah,,204,Bell,Trends in Microbiology,2018,No,Not Review,Other,general host,,,Bacterial,general bacterium,,No data,,,
Ryan,,108,Betancourt,J Gen Virol,2011,No,Not Review,Plants,Melon plant,No,,Viral,Cucumber mosaic virus,Differences found in traits determining fitness of virus,No model,,Yes,
Fadoua,,73,Betancourt,Evolutionary Applications,2013,No,Not Review,Plants,,No,,Viral,Cucumber mosaic virus,,No data,,No,
Leah,,205,Birget,Proc Roy Soc B,2017,No,Not Review,Non-human mammal,mice,,,Protozoa (Malaria parasite/etc),Plasmodium chabaudi,,No between-host component,,,
Melody,,133,Boldin,Journal of Mathematical Biology,2008,No,Not Review,Other,Generic Host,No,,Other,Generic Pathogen,Superinfection allows for steady coexistence of pathogen traits,No data,,No,
Leah,,151,Boone et al,American J of Trop Med and Hygiene,2002,Yes,Not Review,,,,,,,,Out of Scope,,,
John,,30,Braquart-Varnier,Frontiers in Microbiology,2015,No,Not Review,Invertebrates (Insects/snails/worms/etc),,,,Bacterial,Wolbachia,,No data,,No,
John,,42,Brooks-Pollock,Proceedings of the Royal Society B-Biological Sciences,2015,No,Not Review,Non-human mammal,Meles meles (European Badger),Yes,Bos tauros (cattle),Bacterial,Bovine tuberculosis,Better controlling and understanding BTB in cattle by including badgers in the model,No within-host component,,,
Ryan,,206,Bushman,PlOS Biology,2018,No,Not Review,Human,,,,Protozoa (Malaria parasite/etc),P falciparum,,No data,,,
Fadoua,,207,Cai,Math Meth Appl Sci,2017,No,Not Review,Human,,,,Protozoa (Malaria parasite/etc),,,No data,,,
Lauren,,208,Cen,Journal of Theoretical Biology,2014,No,Not Review,Human,,Non-human mammal,"cat, mouse, pig",Protozoa (Malaria parasite/etc),T. gondii,,No data,,,
Fadoua,,209,Chang,Parasitology,2015,No,Not Review,Human,,,,Protozoa (Malaria parasite/etc),,,No between-host component,,,
Fadoua,,137,"Coombs, D",Theoretical population biology,2007,No,Not Review,Human,,No,,Viral,,,No data,,No,
Melody,,96,Cuadros,Theorotical Biology and Medical Modelling,2012,Yes,Not Review,Human,Homo Sapien,No,,Viral,human immunodeficiency virus,variations in the viral replicative capacity would influence the effect of co-infection on the VL,No data,,No,
Fadoua,,29,"Dang, YX",JOURNAL OF BIOLOGICAL DYNAMICS,2016,No,Not Review,Birds,,,,Viral,flu,,No data,,No,
Sarah,,18,De Maio,PLOS Computational Biology,2016,No,Not Review,Human,,,,Viral,Foot and Mouth Disease Virus,,Other,Software Paper (data found in another paper (10.1371/journal.pgen.1005421)),Yes,Klebsiella pneumoniae as well
Ryan,,25,DeBlasio,J Virol,2016,Yes,Not Review,,,,,,,,Out of Scope,,,
Sarah,,98,Devaux,World Journal of Virology,2012,No,Not Review,Human,,No,,Viral,Chikungunya,,No model,,Yes,
Sarah,,210,Dewar,PLOS Pathogens,2018,No,Not Review,Human,,,,Other,trypanosma brucei,,No between-host component,,,
Lauren,,13,Doekes,Plos Computational Biology,2017,No,Not Review,Human,,No,,Viral,HIV,Presence of latent reservoir can delay evolution of virus in the host changing transmission at the population level,No data,Data presented in Figure 2 is motivational,Yes,
Fadoua,,211,Dolan,Annual review of virology,2018,No,Review,,,,,,,,Review,,,
Lauren,,3,Dorratoltaj,Peer J,2017,No,Review,,,,,,,,Review,,,
Leah,,212,Duncan,Oikos,2018,No,Not Review,Invertebrates (Insects/snails/worms/etc),Paramecium caudatum,,,Bacterial,"Holospora undulata, H. caryophila, H. obtusa",,No model,,,
Zach,,136,"Ellner, Stephen P",AMERICAN NATURALIST,2007,No,Not Review,Invertebrates (Insects/snails/worms/etc),Sea Fan,No,,Fungal,Aspergillus sydowii,environmental factors effects sea fan immune system,No between-host component,,No,
Leah,,95,Erler et al,Ecology and Evolution,2012,Yes,Not Review,,,,,,,,Out of Scope,,,
Leah,,213,Famulare,PLOS Biology,2018,No,Not Review,Human,,,,Viral,Polio virus (wild and attenuated in vaccine),,No data,,,
Leah,,214,Farrukee,Antimicrobial Agents and Chemotherapy,2018,No,Not Review,Human,,,,Viral,Influenza B,,No model,,,
Lauren,,31,Feng,Mathematical Biosciences,2015,No,Not Review,Other,Not specific host,No,,Other,Not specific pathogen - environmentally driven pathogen,Importance of linking functions; potential backward bifurcation,No data,,No,
Fadoua,,215,Feng,Mathematical Biosciences,2012,No,Not Review,Non-human mammal,cats,,,Protozoa (Malaria parasite/etc),Toxoplasma gondii,,No data,,,
John,,21,Fenton,Parasitology,2016,No,Review,,,,,,,,Review,,No,
Lauren,,216,Fernandez-Gonzalez,Parasitology,2018,No,Not Review,Birds,,,,Other,",",,No model,,,
Zach,,28,Forrester,VIRUS EVOLUTION: CURRENT RESEARCH AND FUTURE DIRECTIONS,2016,No,Review,,,,,,,,Review,,,
Sarah,,47,Frost,Epidemics,2015,No,Review,,,,,,,,Review,,,
John,,102,Fryer,PLOS Computational Bio,2011,No,Not Review,Human,Homo sapien,No,,Viral,HIV,New approach for modeling HIV immune escape mutants in a vaccinated population,No data,,No,
Melody,,107,Fryer,PLoS One,2011,No,Not Review,Non-human mammal,Mus,No,,Other,transmissible spongiform encephalopathies,There is no safe does of TSE,No between-host component,,No,prions
Lauren,,217,Ganusov,Evolution,2002,No,Not Review,Non-human mammal,general vertebrate host (could be human or non-human),Human,,Other,general microparasite,,No data,,,
Melody,,125,Garamszegi,Malaria Journal,2009,No,Not Review,Non-human mammal,Primates,No,,Protozoa (Malaria parasite/etc),Plasmodium,Primate malarias is constrained by the phylogenetic associations of their hosts,No within-host component,,No,
Sarah,,57,Garira,Mathematical Biosciences,2014,No,Not Review,Human,,No,,Macroparasite (Worms/ticks/etc),Schistosomiazis,,No data,,Yes,
Zach,,144,Gilchrist,Journal of Theoretical Biology,2006,No,Not Review,Other,general host,,,Other,general parasite,,No data,,,
Leah,,218,Gilchrist,Journal of Theoretical Biology,2002,No,Not Review,Other,general host,,,Other,general parasite,,No data,,,
Melody,,79,Gjini,Proceedings of the Royal Society B- Biological Science,2013,Yes,Not Review,,,,,,,,Out of Scope,,,
Lauren,,219,Gordo,BMC Evolutionary Biology,2007,No,Not Review,Other,gerenal host,,,Other,"general pathogen - called ""infectious agent""",,No data,,,
Lauren,,139,Graham,Trends in Parasitology,2007,No,Review,,,,,,,,Review,,,
Sarah,,220,Greeff,Vetrinary Parasitology,2018,No,Not Review,Non-human mammal,carnivores,,,Macroparasite (Worms/ticks/etc),Spirocerca lupi,,No model,,,
Lauren,,,Greenspoon,Journal of Theoretical Biology,2018,No,Not Review,Other,general host,,,Other,general pathogen,,No data,,,
Fadoua,,11,"Gulbudak, Hayriye",BULLETIN OF MATHEMATICAL BIOLOGY,2017,No,Not Review,Human,homo sapiens,No,,Viral,West Nile and Rift Valley,These results are utilized to compute host and pathogen evolutionary trajectories and to determine how model parameters affect evolution outcomes,No data,,No,
Ryan,,46,Gutierrez,J Virol,2015,No,Not Review,Invertebrates (Insects/snails/worms/etc),Mosquito,No,,Viral,Venezuelan equine encephalitis virus,Data on demographic changes of virus population,No model,,No,
John,,74,Hall,Virus Research,2013,No,Not Review,Plants,Does not specify,,,Viral,Barley yellow dwarf virus (PAV and PAS),"How competition between species affects virus growth within host, transmission rate between hosts, virus population structure",No model,,No,
Ryan,,97,Hall,Ecology,2012,No,Not Review,Invertebrates (Insects/snails/worms/etc),Daphnia dentifera (zooplankton),No,,Fungal,Metschnikowia bicuspidata,Determine which ecological factors affect trade-offs and why,No between-host component,,Yes,
Melody,,34,Handel,Philosophical Transactions of the Royal Society B-Biological Science,2015,No,Review,,,,,,,,Review,,,
John,,112,Hawley,Functional Ecology,2011,No,Review,,,,,,,,Review,,No,
Melody,,152,Hellriegel,Trends in Parasitology,2001,No,Not Review,Other,Generic Host,No,,Other,Generic Pathogen,Connecting immunology and epidemiology,No data,,No,
Lauren,,222,Hite,Philosophical Transactions B,2018,No,Not Review,Other,,,,Other,general parasite,,No data,,,
Fadoua,,223,Holding,The american naturalist,2018,No,Not Review,Human,,,,Protozoa (Malaria parasite/etc),,,No data,,,
Fadoua,,224,Holt,The american naturalist,1985,No,Not Review,Other,general host,,,Other,general parasite,,No data,,,
Fadoua,,61,Hool,EPIDEMICS,2014,No,Not Review,Human,homo sapiens,No,,Viral,HIV-1,,No model,,No,
Leah,,114,Hurt et al,J of Virology,2010,No,Not Review,Non-human mammal,ferret,No,,Viral,Influenza,"experimental + mathematical analysis provides ""insight
into the relative fitness, both within the host and between hosts, of two different influenza virus""",Other,between host experiments but no between host model,Yes,
Fadoua,,91,"Hurtado, PJ",JOURNAL OF THEORETICAL BIOLOGY,2012,No,Not Review,Birds,Carpodacus mexicanus,No,,Bacterial,Mycoplasma gallisepticum (MG),,No data,,No,
John,,92,Jackwood,Infection Genetics and Evolution,2012,No,Not Review,Birds,Gallus gallus domesticus (chicken),No,,Viral,Avian gammacoronavirus infectious bronchitis virus,Evolution of IBV in commercial poultry,No model,,No,
Zach,,128,"Jaenike, John",OIKOS,2009,No,Not Review,Invertebrates (Insects/snails/worms/etc),mosquito spp.,No,,Bacterial,wolbachia,,No data,,No,
Sarah,,109,Johnson,Ecology,2011,No,Not Review,Reptile/Amphibian/Fish,,No,,Macroparasite (Worms/ticks/etc),"Ribeiroia ondatrae, Echinostoma trivolvis",,No model,,No,
Fadoua,,120,Kao,"Network Scinece, Complexity in nature and technology",2010,No,Review,,,,,,,,Review,,,
Ryan,,143,Karvonen,Parasitology,2006,No,Not Review,Birds,Larus argentatus (herring gull),Yes,Larus callus (common gull),Macroparasite (Worms/ticks/etc),Diplostoymum spothaceum and Diplostoymum pseadospathaceum,Investigated suitability of parasites between hosts; egg numbers positively correlated with parasite species,No model,,Yes,
Leah,,53,Kernbauer et al,Infection and Immunity,2015,No,Not Review,Non-human mammal,mouse model,No,,Bacterial,Staphylococcus aureus,establish animal model of within/between transmission of staph,No model,,No,
Sarah,,127,King,American Naturalist,2009,No,Not Review,Human,,No,,Bacterial,"Bordetella pertussis, Bordetella parapertussis",,No data,,Yes,
Leah,,226,Klein,Journal of Theoretical Biology,2014,No,Not Review,Human,,Invertebrates (Insects/snails/worms/etc),mosquito,Protozoa (Malaria parasite/etc),malaria (general),,No data,,,
Zach,,145,"Klinkenberg, D",PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES,2005,No,Not Review,Birds,gallus domesticus,No,,Protozoa (Malaria parasite/etc),Eimeria spp,,No between-host component,,No,
Leah,,32,Laabei et al,PLOS Biology,2015,No,Not Review,Other,unclear from abstract,No,,Bacterial,Staphylococcus aureus,toxicity of secretions by bacteria are inversely related to disease severity and may be related to evolutionary tradeoffs between fitness and transmissibility,No model,,Yes,
Melody,,16,Lambrechts,Current Opinions in Virology,2016,No,Not Review,Other,Mosquito,No,,Viral,Dengue Virus,Evolutionary changes of Dengue is an important component of the virus host interaction,No model,,No,
Lauren,,122,Lange,Plos Computational Biology,2009,No,Not Review,Other,Disease model in general (not species specific),Yes,Disease model in general (not species specific),Other,Disease model in general (not species specific),plausible mechanistic hypothesis for the observed tradeoff between pathogen transmissibility and antigenic diversity,No data,,No,
Ryan,,134,Lavine,Trends Microbiol,2008,No,Review,,,,,,,,Review,,,
Lauren,,22,Legros,Journal of Royal Society Interface,2016,No,Not Review,Human,,Yes,mosquito,Protozoa (Malaria parasite/etc),Plasmodium,Resistance is less likely in areas of high transmission due to competition of strains; introduction of linking functions,No data,,Yes,
Melody,,45,Lin,Journal of Virology,2015,No,Not Review,Human,Homo Sapien,No,,Viral,Hepatitis B virus,"Rapid mutation at limited spots, while all other spots on th genome mutate at a much slower rate when HBV is passed through multiple host",No model,,No,
Ryan,,70,Lion,J Evol Biol,2013,No,Not Review,Human,Homo sapiens,No,,Protozoa (Malaria parasite/etc),General parasite,Links model of kin selection of virulence evolution with epidemiological model; low within-host relatedness in competitive parasite interactions corresponds to either low or high levels of virulence,No data,,No,
John,,121,Luciani,PLOS Computational Bio,2009,No,Not Review,Human,Homo sapien,No,"Doesn't specify humans, but virus only affects humans and chimps. So possibly chimps?",Viral,Hepatitis C,"Nested approach for modeling chronic infections that evolve rapidly, such as Hep C",No data,,No,
Sarah,,228,Lumby,PLOS Genetics,2018,No,Not Review,Other,general host,,,Viral,Influenza,,No between-host component,,,
Zach,,229,Lythgoe,International Journel of Organic Evolution,2013,No,Not Review,Human,,,,Viral,HIV,,No model,,Yes,they pulled data
Zach,,155,"Mackinnon, MJ",PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES,1999,No,Not Review,Non-human mammal,rodents?,No,,Protozoa (Malaria parasite/etc),Plasmodium chabaudi,,No between-host component,,No,
Lauren,,63,Maher,Canadian Journal of Zoology,2014,No,Not Review,Non-human mammal,Small mammal,No,,Macroparasite (Worms/ticks/etc),Fleas,Experimental quantification of small mammal - flea communities across spatial variation,No model,,No,
Zach,,230,Marchetto,Ecology,2018,No,Not Review,Plants,Phaseolus vulgaris,,,Viral,Clover yellow vein virus and Bean common mosaic virus,,No model,,No,
Fadoua,,41,Martcheva,VETERINARY RESEARCH,2015,No,Not Review,Non-human mammal,cattle,No,,Bacterial,Johne's disease/Mycobacterium avium,,No data,,No,
Melody,,69,"Martcheva, M",Journal of Biological Dynamics,2013,No,Not Review,Human,Homo Sapien,,,Viral,human immunodeficiency virus,Medicine that decreases viral load will increase overall population infection,No data,,No,
Lauren,,43,Martinez-Bakker,Trends in Ecology and Evolution,2015,No,Review,,,,,,,,Review,,,
Lauren,,150,McCarthy,Journal of Parasitology,2002,No,Not Review,Invertebrates (Insects/snails/worms/etc),Littorina saxatilis (snail),,,Macroparasite (Worms/ticks/etc),"Maritrema arenaria, Microphallus similis, Microphallus piriformes (nematodes)","Variation in host exploitation and life history appeared adaptive
for transmission to the next host",No model,,No,
Fadoua,,20,"McKay, AF",INTEGRATIVE AND COMPARATIVE BIOLOGY,2016,Yes,Review,,,,,,,,Out of Scope,,,
Lauren,,231,Mideo,"Infection, Genetics and Evolution",2012,Yes,Review,,,,,,,,Out of Scope,,,
Leah,,132,"Mideo, Alizon, and Day",Trends in Ecol and Evol,2008,No,Review,,,,,,,,Review,,,
Lauren,,104,"Mideo, Savill, Chadwick",American Naturalist,2011,No,Not Review,Non-human mammal,rodent,No,,Protozoa (Malaria parasite/etc),Plasmodium chabaudi,burst size of parasite contributes to dynamics,No between-host component,,No,
John,,62,Mobegi,Molecular Biology and Evolution,2014,No,Not Review,Human,Homo sapien,,,Protozoa (Malaria parasite/etc),human malaria parasite Plasmodium falciparum,,No model,,,
Melody,,24,Moncla,Cell Host and Microbe,2016,No,Not Review,Non-human mammal,Mustela putorius furo,No,,Viral,H1N1 influenza virus,The way that the virus mutates over time,No model,,Yes,
Zach,,40,"Mordecai, Erin A",PLOS ONE,2015,No,Not Review,Plants,Nassella (Stipa) pulchra,Yes,Bromus hordeaceus,Viral,"Barley yellow dwarf virus-PAV, Barley yellow dwarf virus-MAV, and Cereal yellow dwarf virus-RPV",,Other,,,?
John,,2,Moxon,Evolution,2017,No,Not Review,Other,Generic Host,,,Other,Generic Pathogen,Impact of bottlenecking on survival and adaptation - a new modeling approach,No data,,Yes,
Zach,,48,"Murall, Carmen Lia",: PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES,2015,No,Not Review,Other,Red Blood Cells,Yes,Homo sapien,Viral,human papillomavirus,,Other,,,?
Zach,,72,"Murillo, Lisa N",THEORETICAL BIOLOGY,2013,No,Not Review,Human,Homo sapien?,No,,Viral,Influenza,multiscale model,No within-host component,,No,
Sarah,,232,Netshikweta,Computational and mathematical methods in medicine,2017,No,Not Review,Human,,,,Macroparasite (Worms/ticks/etc),Dracunculus medinensis,,No data,,,
Lauren,,233,O'Donnell,Proceedings of the Roayl Society B,2011,No,Not Review,Non-human mammal,rodent,,,Protozoa (Malaria parasite/etc),Plasmodium chabaudi,,No model,,,
Ryan,,116,Osiemo,Social Insects,2010,Yes,Not Review,,,,,,,,Out of Scope,,,
John,,138,Pagan,PLOS One,2007,No,Not Review,Plants,Abstract doesn't specify,No,,Viral,Arabidopsis thaliana-Cucumber mosaic virus,The need to consider the effect of both the host and parasite genotypes in analysis of host-parasite interaction,No within-host component,,No,
Leah,,15,Pagen et al,PLOS ONE,2016,No,Not Review,Human,,No,,Viral,HIV-1B,clinical factors are related to the rate of evolution of HIV virus between hosts.,No within-host component,,No,
Zach,,234,Palmer-Young,Scientic Reports,2017,No,Not Review,Invertebrates (Insects/snails/worms/etc),bumble bee,,,Protozoa (Malaria parasite/etc),Crithidia bombi,,No model,,No,
Leah,,77,Park et al,Phil Trans Roc Soc B,2013,No,Not Review,Other,general host,No,,Other,general pathogen,"""Results show that positive correlations between
fitnesses across scales can greatly facilitate emergence, while cross-scale conflicts in selection can lead to evolutionary dead ends""",No data,,Yes,
Melody,,5,Parkinson,Physiological Entomology,2017,No,Not Review,Invertebrates (Insects/snails/worms/etc),Planococcus citri,No,,Bacterial,proteobacteria (Symbiotic),The bacteria has very little effect on the fecundity or development of host,No between-host component,,No,
Lauren,,235,Parratt,Journal of Applied Ecology,2018,No,Not Review,Plants,,,,Multiple,"Po. plantaginis, Ampelomyces",,No model,,,
Melody,,115,Pepin,Journal of Theoretical Biology,2010,No,Not Review,Other,Generic Host,No,,Viral,Acute Viral infection,Discuss reasons for immune escape of virus,No data,,Yes,
Sarah,,71,Perez,Fungal Ecology,2013,Yes,Not Review,,,,,,,,Out of Scope,,,
Melody,,141,Perkins,International Journal for Parasitology,2006,No,Not Review,Invertebrates (Insects/snails/worms/etc),helminths,Yes,Generic Host,Other,Generic Pathogen,Helminths are modeled as a vector to spread a pathogen in a host. They show that it can increase pathogen virulence,No data,,No,
Sarah,,236,Pharaon,Journal of Theoretical Biology,2018,No,Not Review,Human,,,,Other,parasite,,No within-host component,,,
Ryan,,35,Pigeault,Phil Trans Roy Soc B,2015,No,Not Review,Invertebrates (Insects/snails/worms/etc),Culex pipiens (mosquito),No,,Protozoa (Malaria parasite/etc),Plasmodium relictum SGS1 (avian malaria),Statistical relationships between infection-related parameters and transmission,No model,,Yes,
Fadoua,,1,Pilosof,JOURNAL OF THEORETICAL BIOLOGY,2017,No,Not Review,Other,,No,,Other,,These results highlight the importance of considering multiple measures of disease risk and advance our understanding of disease spread in multihost systems,No data,,No,
Zach,,237,Pimenoff,Genes,2018,Yes,Review,,,,,,,,Out of Scope,,,
Zach,,19,"Piontkivska, Helen",GENOME BIOLOGY AND EVOLUTION,2016,Yes,Not Review,,,,,,,,Out of Scope,,,
Lauren,,238,Pollitt,Evolutionary Applications,2012,No,Not Review,Invertebrates (Insects/snails/worms/etc),Anopheles stephensi,,,Protozoa (Malaria parasite/etc),Plasmodium Berghei,,No within-host component,,,
Lauren,,239,Pollitt,Trends in Parasitology,2011,No,Review,,,,,,,,Review,,,
Sarah,,240,Pollitt,American Naturalist,2011,No,Not Review,Non-human mammal,rodent,,,Protozoa (Malaria parasite/etc),Plasmodium chabaudi,,No data,,,
Sarah,,26,Rapti,Bulletin of Mathematical Biology,2016,No,Not Review,Other,Zooplankton,No,,Fungal,Yeast?,,No data,,Yes,
Leah,,140,Read and Keeling,Theor Pop Bio,2006,No,Not Review,Other,general,No,,Other,general,"""complex dynamics may emerge due to the feedbacks between epidemiological and evolutionary dynamics""",No data,,No,
Fadoua,,129,"Reckardt, K",OIKOS,2009,No,Not Review,Non-human mammal,bats,No,,Macroparasite (Worms/ticks/etc),wing mite Spinturnix,,No model,,No,
Melody,,241,Reece,Journal of Biological Rythyms,2017,No,Not Review,Other,general host,,,Other,general parasite,,No data,,,
Sarah,,81,Regoes,Proc. Royal Soc. Lond,2013,No,Not Review,Other,Generic Host,,,Viral,RNA virus,,No data,,Yes,
Melody,,242,Riley,Journal of Theoretical Biology,2003,No,Not Review,Non-human mammal,cat,,,Macroparasite (Worms/ticks/etc),Brugia pahangi,,No between-host component,,,
Sarah,,154,Rispe,American Naturalist,2000,No,Not Review,Invertebrates (Insects/snails/worms/etc),Aphid,No,,Bacterial,Buchnera,,No data,,Yes,
Leah,,65,Rolin et al,Infection and Immunity,2014,No,Not Review,Non-human mammal,mouse model,No,,Bacterial,Bordetella bronchiseptica,production of certain lipids impacts persistance with a host and transmission between,No model,,No,
Lauren,,131,Schmid,Plos one,2008,No,Not Review,Human,,No,,Viral,HIV,within-host TAP mutations occur frequently,Other,bioinformatic model,No,
Ryan,,243,Schneider,PLOS Pathogens,2018,No,Not Review,Non-human mammal,rodent,,,Protozoa (Malaria parasite/etc),,,No between-host component,,Yes,
Melody,,55,Scordato,Journal of Animal Ecology,2014,No,Not Review,Birds,Phylloscopus humei,Yes,Phylloscopus trochiloides,Protozoa (Malaria parasite/etc),Haemoproteus and Plasmodium,Host species is a better indicator of Malaria Diversity,No model,,Yes,
Fadoua,,101,"Severins, M",VETERINARY Quarterly,2012,No,Not Review,Non-human mammal,cattle,No,,Bacterial,Mycobacterium avium,,No data,,No,
Zach,,99,"Severins, Maite",JOURNAL OF THE ROYAL SOCIETY INTERFACE,2012,No,Not Review,Human,Homo sapien,No,,Protozoa (Malaria parasite/etc),Plasmodium falciparum,,Other,,,?
Leah,,44,Shen et al,Mathematical Biosciences,2015,No,Not Review,Human,,No,,Viral,HIV,Treatment of disease to slow within host progression and increase survival can also increase R0/transmission,No data,,No,
Zach,,58,"Shrestha, Sourya",THEORETICAL ECOLOGY,2014,No,Not Review,Other,general,No,,Other,general,invasion-presistance,No data,,No,
Ryan,,153,Smith,Proc Roy Soc B,2001,No,Not Review,Other,General population,No,,Bacterial,General bacterial pathogen,Mathematical model shows horizontal gene transfer is a novel mechanism for evolution of bacteria through populations,No data,,Yes,
Lauren,,Review suggested,Smith,Evolutionary Application,2017,No,Not Review,Human,,,,Viral,HIV,,No within-host component,,,
Sarah,,9,Sofone,Journal of Theoretical Biology,2017,No,Not Review,Other,Generic Host,,,Multiple,Generic Pathogen,,No between-host component,,No,
Sarah,,117,Steinmeyer,Philos. Trans. Royal Soc. B,2010,No,Not Review,Human,Generic Host,No,,Viral,,"""These results show that within-host dynamics and viral dose should not be neglected in epidemiological models,""",No data,,No,
Zach,,110,"Sternberg, Eleanore D",INFECTION GENETICS AND EVOLUTION,2011,Yes,Not Review,,,,,,,,Out of Scope,,No,
Zach,,245,Sun,International Journal of Bifurcation and Chaos,2018,No,Not Review,Other,general host,,,Other,general parasite,,No data,,,
Leah,,23,Sun et all,PLOS ONE,2016,No,Not Review,Human,,No,,Viral,HIV,when and how much treatment is given impacts R0 in an IBM of transmission between gay men (men sleeping with men),No data,,Yes,
Sarah,,39,Susi,American Naturalist,2015,No,Not Review,Plants,Plantago lanceolata,No,,Fungal,Pdodsphaera plantaginis,,Other,,,
Lauren,,52,Susi,Nature Communications,2015,No,Not Review,Plants,Plantago lanceolata,No,,Other,"Podosphaera plantaginis (mildew, parasite?)","Data on co-infection - co-infected hosts shed more transmission pagules, effecting between-host transmission",No model,,No,
Leah,,106,Svensson-Coelho and Ricklefs,J of Animal Ecology,2011,Yes,Not Review,,,,,,,,Out of Scope,,,
Melody,,247,Taylor,Parasitology,2003,No,Not Review,Other,"general, cattle, tick",,,Protozoa (Malaria parasite/etc),theileria annulata,,No model,,,
Ryan,,248,Theys,Current Opinion in Virology,2017,No,Review,,,,,,,,Review,,,
Fadoua,,111,Ulrich,Journal of Evolutionary Biology,2011,No,Not Review,Invertebrates (Insects/snails/worms/etc),bumblebee,No,,Protozoa (Malaria parasite/etc),trypanosome,,No model,,No,
Zach,,118,"van Noort, Sander P",PLOS ONE,2010,No,Not Review,Other,general?,No,,Protozoa (Malaria parasite/etc),Plasmodium falciparum,pathogen evolution,No data,,No,
Ryan,,17,VanderWaal,Func Ecol,2016,No,Review,,,,,,,,Review,,,
John,,149,Vavre,Evolution,2003,No,Not Review,Invertebrates (Insects/snails/worms/etc),,No,,Bacterial,Wolbachia,Revisiting how Wolbachia spreads and how it may evolve once in a new host,No data,,No,
Lauren,,250,Viljoen,Acta Biotheor,2018,No,Not Review,Other,general host,,,Other,general pathogen,,No data,,,
Lauren,,251,Vrancken,Virus Evolution,2017,No,Not Review,Human,,,,Viral,hepatitus B,,No within-host component,,,
Zach,,252,Vrancken,Conference paper,2013,Yes,Not Review,,,,,,,,Out of Scope,,,
Ryan,,7,Walker,Phil Trans Roy Soc B,2017,No,Not Review,Non-human mammal,Giraffe,Yes,"Other herbivore hosts, namely hartebeest, steenbok, etc",Macroparasite (Worms/ticks/etc),Nematode parasite,Explore connections between parasites and hosts to determine differences in susceptibility and transmissibility,Other,Model not linked,Yes,
Ryan,,80,Walker,Lancet Infect Dis,2013,No,Not Review,Human,Homo sapiens,No,,Bacterial,Mycobacterium tuberculosis,Estimate genetic diversity of strains through sequencing to determine how it can be used to investigate outbreaks,No model,,No,
Zach,,10,"Wang, Xueying",JOURNAL OF BIOLOGICAL DYNAMICS,2017,No,Not Review,Human,Homo sapien,No,,Bacterial,Vibrio cholerae,prevention and control methods,Other,,,?
Fadoua,,49,"Wasik, Brian",EVOLUTION,2015,No,Not Review,Other,,No,,Viral,vesicular stomatitis virus,,No model,,No,
Lauren,,94,Wilks,Vaccine,2012,No,Review,,,,,,,,Review,,,
Leah,,4,"Willem, et al",BMC Infectious Diseases,2017,No,Review,,,,,,,,Review,,,
John,,12,Willemsen,BMC Evolutionary Biology,2017,No,Not Review,Plants,Nicotiana benthamiana,Yes,Datura stramonium,Viral,Tobacco Etch Virus,Studying virulence and fitness for TEV in several host species,No between-host component,,,
Zach,,253,Wymant,Mol Biol Evo,2017,Yes,Not Review,,,,,,,,Out of Scope,,New Software Paper,
Melody,,254,Xiao,Siam Journal on Applied Mathematics,2013,No,Not Review,Human,,,,Protozoa (Malaria parasite/etc),Malaria,,No model,,,
Melody,,255,Yang,International Journal of Biomathematics,2018,No,Not Review,Human,,,,Bacterial,Cholera,,No data,,,
Melody,,256,Zeng,Microbiome,2018,Yes,Not Review,,,,,,,,Out of Scope,,,
Zach,,89,"Zug, R",EVOLUTIONARY BIOLOGY,2012,No,Not Review,Invertebrates (Insects/snails/worms/etc),mosquito spp.,,,Bacterial,wolbachia,evolutionary adaptation,No within-host component,,No,
Ryan,,157,Zung,Canadian J Zool,1989,Yes,Not Review,,,,,,,,Out of Scope,,,
Ryan,,126,Zwart,Evol Appl,2009,Yes,Not Review,,,,,,,,Out of Scope,,,
John,,244,Scholle,The american naturalist,2013,No,Not Review,Other,general,,,Viral,,,No data,,,