LOCUS CapAstV-G2.1 6059 bp RNA linear 14-JAN-2019 DEFINITION CapAstV-G2.1, partial sequence. ACCESSION CapAstV-G2.1 VERSION KEYWORDS . SOURCE Caprine Astrovirus G2.1 ORGANISM Caprine Astrovirus G2.1 Unclassified. REFERENCE 1 (bases 1 to 6059) AUTHORS Kauer,R.V., Koch,M.C., Boujon,C.L., Werder,S. and Seuberlich,T. TITLE Discovery of novel astrovirus genotype species in small ruminants JOURNAL unpublished REFERENCE 2 (bases 1 to 6059) AUTHORS Kauer,R.V., Koch,M.C., Boujon,C.L., Werder,S. and Seuberlich,T. TITLE Direct Submission JOURNAL Submitted (14-JAN-2019) DCR-VPH, University of Bern, Bremgartenstrasse, Bern, 3012, Switzerland COMMENT Bankit Comment: TOTAL # OF SEQS:5 ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6059 /organism="Caprine Astrovirus G2.1" /mol_type="genomic RNA" /strain="CapAstV-G2.1" /host="Capra hircus" /tissue_type="brain" /country="Switzerland" /collection_date="2017" gene 41..3786 /gene="ORF1ab" CDS join(41..2272,2272..3786) /gene="ORF1ab" /ribosomal_slippage /codon_start=1 /product="nonstructural protein nsp1ab" /translation="MTASTVSEGEWRTFVLDVDHGEHVAVEVNHIRDHQPTILTAALI QDRSEKAREISDLRLNNELLRGELAVYRREHEATPRLTLSWPTIFALIFLGFSLFWHS ANGMTTTSTTAAAANPMEMLRLNIWLDDFIAEAKRVVHTHKTTVIDAVLTSPSWIVAT AVVPYLWPIVTITLGLISVYKSERKVLSVLFLAAASVSGGDWVFLATASSQTVVSAII QILCVLISHIDPLGSICLSAIAMFVVFLASMCCSNTDFIQHSRASSINTFVLIFSIVM RTMRVSAMPFAMAIAVVRAYYILTTPTGATIEVRSEDGKVLTKETLKPSVLFRFKQSI RDKVVRLFPQRVRHTQAPLVRVNPNAVCRVETPEGVGTAFFCANYIVTAAHVMGRHTV ATIILGPQRVQATLARVVPDKDIALLKIPPQCQNAPRLKIAKSKDVSWVCVYTPGEGG SIVQSVVPGNIIDGNVDYAIQTVDGMSGGPIVNPDGHVIGVHQTNTGYTGGGEVLTHE DVIDPPRDDEKAKLKAELEELRKQLKQCSGPNEANVVALVREAMGREMQILRAEIDAA LTKFSQVKKGKTKRRRAVLRGAKPGRRQKGPLFTEEEYQKMLDEGLTRDDIKRIVDEI YAKEAAGFPEWEPMDDDYNPDDDWVFDSDTPYGQKTVVIPSFTQYCRREYDPTDVVDM VQQLSAADLEALGPLVKVIINTSQVKNPLGPVMCLSDRYAAYHGLPPISDGLPYKQRS KPKNLQGGGQAPPKTNSLGYWKTLALPPRRVVTPQNFPVVCNLPINRPLYEDRGKRDP LLGLLPPCDEDLEFGPATWTPQAITKSFEKFEYAEPSQFWKLYPEECAFADFQWRKHF NFLEGSRVIHMCATEKNVRSTPGYPKCELFQTEEEFMDRYGWAPYLEEFKAIDAGERP VVLWYCFLKKEILKKSKIRDQDIRQIVCADAIYARIGCCLEQHQNKLCKENTGNSSGQ CGWCPFYGGFRDTMRRIERGKYKIEFDWTRFDGTIPCQLLKHIKDLRWEKMCPEHRDR YRGIRNWYVANLLTRHVLLPTGEVTVQHRGNPSGQISTTIDNNMINYWLQAFEFAYIN KGADIYALWDEYDTIVYGDDRLTTTPILPPDYVPRVIQMYREVFGMWVKPDKVKVSDT VVGLTFCGFTVGPDYLPYPTQPEKLWASLVDPVSKLPDVDSLCGKLESFRILMHNHPD HPFKEYIDKCLAALEEQRTMPVITDEFLKYLWRGGPKMSNHNAT*" gene 41..2314 /gene="ORF1a" CDS 41..2314 /gene="ORF1a" /codon_start=1 /product="nonstructural protein nsp1a" /translation="MTASTVSEGEWRTFVLDVDHGEHVAVEVNHIRDHQPTILTAALI QDRSEKAREISDLRLNNELLRGELAVYRREHEATPRLTLSWPTIFALIFLGFSLFWHS ANGMTTTSTTAAAANPMEMLRLNIWLDDFIAEAKRVVHTHKTTVIDAVLTSPSWIVAT AVVPYLWPIVTITLGLISVYKSERKVLSVLFLAAASVSGGDWVFLATASSQTVVSAII QILCVLISHIDPLGSICLSAIAMFVVFLASMCCSNTDFIQHSRASSINTFVLIFSIVM RTMRVSAMPFAMAIAVVRAYYILTTPTGATIEVRSEDGKVLTKETLKPSVLFRFKQSI RDKVVRLFPQRVRHTQAPLVRVNPNAVCRVETPEGVGTAFFCANYIVTAAHVMGRHTV ATIILGPQRVQATLARVVPDKDIALLKIPPQCQNAPRLKIAKSKDVSWVCVYTPGEGG SIVQSVVPGNIIDGNVDYAIQTVDGMSGGPIVNPDGHVIGVHQTNTGYTGGGEVLTHE DVIDPPRDDEKAKLKAELEELRKQLKQCSGPNEANVVALVREAMGREMQILRAEIDAA LTKFSQVKKGKTKRRRAVLRGAKPGRRQKGPLFTEEEYQKMLDEGLTRDDIKRIVDEI YAKEAAGFPEWEPMDDDYNPDDDWVFDSDTPYGQKTVVIPSFTQYCRREYDPTDVVDM VQQLSAADLEALGPLVKVIINTSQVKNPLGPVMCLSDRYAAYHGLPPISDGLPYKQRS KPKNSKGGDKRPPKPTA*" gene 3776..5980 /gene="ORF2" CDS 3776..5980 /gene="ORF2" /codon_start=1 /product="capsid protein precursor" /translation="MPRNRNGRQNRSTTRVVVQSTSGNQQASATNRARRSRKPTVNVN VNTRMQPQARQRPTSNNMRMRNDRRPRRRQQVSGQHEIHQRITTTLGTIGSNTSGGVE NEMTVIINPSTMKEQTGSTSFGPLNVLASQYAMWKVNRIEVTLKQLVGNNAASGTVGR VSAVPNTSASQVSWSSLGARRHMDVNIGRNGKFVITARELKGPKDGWYYTNTTLDPCD SCAGILQIHTLGRTMNPYQNTAYNGPLFLAEVTTDWSFKDYQQNPGMLNMVKSEVAQN ATVEVDPNTNKILMKVANSTRLGAYGQNPSAAEVIWMVTDTVITTGADVFPAPFNWLF KGGWWIIKRLAGAPVSNDANAVYFEVFPSIADAQNNKPCYATSPTNSVVTLQQVDYQQ ITPSNLGTPGETLTVARATTPGGFVVTRMETLYGTDNTYSPSNPTFIMRKNAPGYDRG IGVGDEGQRVFTWNLHRVHVDGDLPLTGPPVVFSDTAKVQIGYVVATSSIGFQGTGPA GANTPKDFYLANVLFVATDSRSYNFQGDYGPFVEGYYSFNRNNPQFTTGSNDFTTTRL KVDAGSTYVAQYLCVGGQRRSITLLGTEIKEPNDGWNNTAQTYTIPSSLGDPNRGFPV GYGAAFLFGNTTQQEAYYDAVASVDDDNDYSEEEALYFDEPPVSVLQVEPEVQNIYSL LLANGCSPRQARLAVNQIKPSKPYTDFVATYHDSLVDGCTPATARAAALAQW*" BASE COUNT 1497 a 1514 c 1522 g 1526 t ORIGIN 1 acggttctac ttttacccaa ccactaggcc tgatcgcgtt ttgaccgcga gtactgtttc 61 tgaaggtgag tggcgcacgt tcgtgcttga tgtggatcat ggtgagcatg ttgctgtgga 121 ggtcaaccac attcgtgatc accagccaac cattctcact gccgctctta ttcaggacag 181 gtcagaaaag gcacgtgaaa tatccgacct gaggctcaac aatgagttgt tgcggggtga 241 actcgctgta tacagacggg agcatgaagc gaccccccgg cttacactca gttggcccac 301 tatatttgcc ttgattttcc ttggcttctc ccttttttgg cattcggcga acggcatgac 361 tactacgtcg acgactgccg cggcggctaa ccccatggag atgcttaggt tgaacatctg 421 gcttgatgac tttattgccg aagcgaagcg tgttgttcat acgcacaaga caacggtaat 481 tgacgcggtc ctaacatcac cgtcttggat agttgccacc gctgtggtcc cctatctatg 541 gcccatagtc accatcaccc tagggttgat ttccgtttat aagtctgaac ggaaagtgtt 601 gtctgtgctt ttccttgctg ctgcttctgt tagcgggggg gattgggtat tcctggccac 661 tgcatcatcc cagactgtgg tcagtgccat tatccagatt ctgtgtgttt taatatccca 721 cattgacccc ctgggttcta tttgcctgtc agctattgcc atgtttgtgg tctttctcgc 781 tagcatgtgt tgcagcaata cggacttcat acaacactca cgagcctcat ccatcaacac 841 gtttgtgttg attttctcta tcgtgatgcg tactatgcgg gtgtcggcca tgccctttgc 901 catggcaatt gccgtggtta gagcgtatta tattcttacg acgcccactg gcgccacgat 961 tgaggtacgc agtgaagatg gtaaagtcct caccaaggag accttgaagc caagcgtttt 1021 gtttaggttt aaacagtcta tcagggacaa ggtggtacgg ttgtttccac aacgtgtgcg 1081 tcatactcaa gcaccgctgg tccgtgttaa ccctaatgca gtgtgccgcg ttgaaacgcc 1141 tgagggtgtt ggtacggctt tcttttgtgc caactatata gttacagcgg cgcatgtgat 1201 ggggaggcat acggtagcca ctatcattct tggcccccag cgtgtacagg ctacacttgc 1261 acgggtagtc cctgataagg acattgcact ccttaaaatt ccacctcagt gtcagaatgc 1321 cccccggctt aagatcgcca agagtaagga tgtttcatgg gtttgtgttt atacccctgg 1381 tgaagggggt tctatagtgc agtctgttgt cccaggaaac atcatagatg ggaacgtgga 1441 ctacgctata cagactgttg acggcatgtc gggtgggccc atagtcaacc cagatggcca 1501 tgtgattggc gttcaccaga ccaacactgg ctacacaggt ggcggtgaag tcttgaccca 1561 tgaagatgtc atcgacccac ccagggatga cgagaaggcc aaattgaaag ctgagttgga 1621 ggagttgcgt aagcaactga aacagtgctc tggtcctaat gaggcaaatg tcgtcgctct 1681 ggttcgtgag gccatgggcc gggagatgca gattcttcgc gctgaaattg acgccgcact 1741 cactaagttt agtcaagtga agaaggggaa gaccaagagg cgtcgcgcag tcctgcgcgg 1801 agccaagcct ggccgcagac agaagggccc actttttact gaggaggaat accagaaaat 1861 gcttgatgag ggtctgacta gggatgacat caagagaatt gtcgatgaga tctatgccaa 1921 ggaggcagca ggtttccctg agtgggagcc catggatgat gactacaacc ccgacgatga 1981 ctgggtcttt gactctgata caccatacgg ccaaaaaact gttgtgatac catctttcac 2041 acagtactgt cgccgtgaat atgacccaac tgatgtcgtc gacatggttc aacagctcag 2101 tgctgctgat cttgaagcgc ttggccccct tgtcaaggtt attatcaaca cctctcaagt 2161 caagaatccg cttggtccgg ttatgtgttt gtctgatcgg tacgctgctt atcatggcct 2221 accacccatc tctgatggct taccctacaa gcagcgttcc aaaccaaaaa actccaaggg 2281 gggggacaag cgccccccaa aaccaacagc ttaggatact ggaaaaccct tgcgctccca 2341 ccgcggcgag ttgtgacacc tcaaaacttc cccgtcgtgt gcaacctccc aattaaccgg 2401 cccttgtatg aggaccgtgg gaagcgcgat ccactgttgg gcctactacc cccttgtgat 2461 gaagaccttg agtttggacc ggcaacctgg accccacagg ctattacaaa atcttttgag 2521 aagtttgagt atgctgaacc ctcccagttc tggaaactat accctgagga gtgcgccttt 2581 gctgacttcc agtggcgcaa acacttcaac tttcttgaag gatcacgtgt gatccatatg 2641 tgcgccaccg agaagaacgt gaggtccacc ccggggtatc ccaagtgtga gctattccag 2701 acggaagaag agtttatgga ccgctacggt tgggctcctt acctcgaaga atttaaggcg 2761 attgatgcgg gcgagcgtcc tgtagtcctc tggtattgtt tcctaaaaaa agagatcttg 2821 aagaaatcta aaattcggga ccaggatatt cgccagatag tgtgtgcaga tgccatttac 2881 gcacgcatag gttgttgcct tgaacaacat cagaataagt tgtgtaagga gaacacaggt 2941 aatagcagcg gtcagtgcgg gtggtgccct ttctatggcg gcttccgcga caccatgcgc 3001 cgcatagaga gaggtaaata taagatcgag ttcgattgga cccgatttga tggcactatc 3061 ccctgtcagc tactcaagca catcaaggac ctcaggtggg agaagatgtg tcctgagcat 3121 cgtgatcgct accgcgggat acgtaactgg tacgtggcta acttactcac acgccacgtc 3181 ctcctcccaa ctggtgaggt cactgtccaa caccgtggga atccctctgg gcagatctct 3241 actactattg acaacaacat gatcaactac tggctccagg cttttgagtt tgcctacatt 3301 aataagggcg ctgatatcta cgccctgtgg gacgaatatg acaccattgt ttatggagat 3361 gataggctta caaccacacc catacttccc ccagattacg tccctcgcgt catccagatg 3421 taccgtgagg tgtttgggat gtgggttaag cctgataaag tgaaggtttc cgacactgtt 3481 gtcggtctta ccttctgcgg gtttacggtt ggacctgatt atctcccata ccccacccaa 3541 ccagagaaac tgtgggctag tctcgttgat ccagtcagta aacttcctga tgttgatagc 3601 ctctgtggga agctagagag tttcaggatc ctcatgcata accacccaga ccatcctttt 3661 aaggaatata ttgataagtg tctggctgcg cttgaagaac agcgcacgat gcctgttata 3721 actgatgagt tcctgaagta tctttggagg ggcggaccaa agatgtctaa tcataatgcc 3781 acgtaatcgc aatggtaggc agaatcggag caccacgcga gtggtggtcc aatctacttc 3841 aggcaatcaa caggcgtcgg ctaccaaccg cgcacgacgg tctaggaaac ctacagtcaa 3901 tgtcaacgtc aacacgcgca tgcaaccaca ggcgcgacag cgacctactt ccaacaacat 3961 gcgcatgcgc aatgacaggc gtcctcgcag gcgtcaacaa gtttcgggcc agcatgaaat 4021 acaccagagg atcaccacga cgttaggcac tattgggtct aatactagtg ggggtgtaga 4081 aaatgaaatg acagttataa ttaatccctc aacaatgaaa gaacaaacag gctcaaccag 4141 ttttggtcct ctcaatgttt tagcctccca gtatgctatg tggaaagtca accgcattga 4201 ggtcacactc aaacaattgg tgggcaataa tgctgcctct ggcactgtgg gccgagtgtc 4261 agccgttcct aacaccagtg cctctcaagt cagctggtca tcccttggcg cacgtcgcca 4321 tatggatgtg aatatcggta ggaatggcaa gttcgtgata acagcgaggg agttgaaagg 4381 tccaaaggat ggctggtatt acaccaacac aaccttggat ccttgtgact cgtgcgctgg 4441 tatcctccaa atccacactc ttggtcgcac catgaaccct taccagaaca cagcatataa 4501 tggccccttg tttcttgcgg aggtcactac tgactggtct tttaaagatt accaacaaaa 4561 ccctggtatg ctcaatatgg tcaagagtga agtagcccag aacgccacag ttgaggtgga 4621 tcctaacacc aataaaatac tcatgaaagt agctaattcc actaggttgg gcgcatatgg 4681 ccagaatcca tctgcagctg aggtcatatg gatggttacc gatactgtta ttaccacggg 4741 cgctgacgtt tttccagcac cctttaactg gctttttaag ggtggttggt ggatcataaa 4801 gcgacttgct ggcgccccag tctctaatga cgccaatgca gtctattttg aggtctttcc 4861 ttccatagca gatgcacaga acaataaacc ttgctatgca acctcaccaa cgaattcagt 4921 ggtcacgcta cagcaggtgg actaccagca aataacccca tctaatctcg gtacgcctgg 4981 tgaaactcta actgtggcga gagccactac gccaggtgga tttgtggtta caaggatgga 5041 gaccctctat ggtactgata acacctactc gccatccaac cccacattca ttatgcggaa 5101 aaacgcacca ggttatgaca gggggattgg agttggggac gaaggccaac gtgttttcac 5161 gtggaatctg caccgtgtcc acgttgatgg tgacctgccc ctaacaggac caccggttgt 5221 tttcagtgac actgctaaag tgcaaattgg ctacgtggtt gccacgagtt ccataggctt 5281 ccagggcact gggccggctg gtgctaacac cccaaaggat ttttatctgg caaatgttct 5341 ttttgttgca actgacagta gatcatacaa tttccagggt gattatggac ccttcgttga 5401 gggttactac agtttcaacc gtaacaaccc gcaatttaca acagggtcca atgactttac 5461 gaccacgagg ttgaaagttg atgcaggcag cacctacgtc gcacagtatc tatgcgtagg 5521 tggccaacgg cgttctataa cactgcttgg cactgaaata aaggagccta atgatggatg 5581 gaataatact gcccagacat atacaatacc ctcatcactt ggtgatccta accgtggttt 5641 tccagtaggc tatggtgccg ccttcttgtt tggcaacacc acacaacaag aggcgtatta 5701 tgacgcggtc gccagtgttg atgatgataa tgattactct gaggaagagg cactatactt 5761 cgatgagccc cccgtgagcg ttctccaggt ggagcccgag gtgcagaata tatactcctt 5821 acttttggcg aacggctgtt cgcctaggca ggcacggctt gcggttaatc aaattaaacc 5881 cagcaagcct tatacagatt ttgttgcgac ctaccatgat agcttggtgg atggttgcac 5941 gcctgccact gccagggcag ctgctttggc acaatggtag tctgtgacgt gattgtcgca 6001 ggccagtttt cttcttcttt ttctgacatt tgtggtgtgc ataggtgtag ggacaaaaa // LOCUS CapAstV-G3.1 6062 bp RNA linear 14-JAN-2019 DEFINITION CapAstV-G3.1, partial sequence. ACCESSION CapAstV-G3.1 VERSION KEYWORDS . SOURCE Caprine Astrovirus G3.1 ORGANISM Caprine Astrovirus G3.1 Unclassified. REFERENCE 1 (bases 1 to 6062) AUTHORS Kauer,R.V., Koch,M.C., Boujon,C.L., Werder,S. and Seuberlich,T. TITLE Discovery of novel astrovirus genotype species in small ruminants JOURNAL unpublished REFERENCE 2 (bases 1 to 6062) AUTHORS Kauer,R.V., Koch,M.C., Boujon,C.L., Werder,S. and Seuberlich,T. TITLE Direct Submission JOURNAL Submitted (14-JAN-2019) DCR-VPH, University of Bern, Bremgartenstrasse, Bern, 3012, Switzerland COMMENT Bankit Comment: TOTAL # OF SEQS:5 ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6062 /organism="Caprine Astrovirus G3.1" /mol_type="genomic RNA" /strain="CapAstV-G3.1" /host="Capra hircus" /tissue_type="brain" /country="Switzerland" /collection_date="2017" gene 130..3734 /gene="ORF1ab" CDS join(130..2226,2226..3734) /gene="ORF1ab" /ribosomal_slippage /codon_start=1 /product="nonstructural protein nsp1ab" /translation="MIEDRDRVKREHADLCLQHELLRAELAQHRKEYAQTYRVRFSWP TMLALVFLGFSLCWHGSQAFEATTTTKTTMAVDPSAMLRLNVWLDEFIANAKKTIHTH HTTVVNIARASPTWIIVNAVMPYSWTLISILLGVISVYKAEHKVLSILFLCAATLSGG DWVFITTASYQTIISAIIQVLCVLVSHFDPLGAMCLSTVALFVTFLASMCLSSTDFVH HVRAASINTVVLIVSILLRTLALPAMPLAIALALVRAYHTLTTVSGATVEIRSEDGKV VSKEPVRPGILFKFKQALSRLRQVRSTMPPLVRVNPSAVLRIETPEGVGTGFLCANYI VTAGHVVGSNKVVSACVGQAKYQAQVVRHVPGKDIALLKIPQQLQTYPRLKLASKIDV AWVCVYSPDADGAIIQSVVPGHQVDECIDYAVPTRDGMSGAPLVNPDGRVMAVHLTNT GFTGGAQIITQVDIIDPPKTTATEDKLRAELEELKKQLNKCSQSTTNEQDIVNLVRAA IGREMTILRSEINRELGFQQAKGKTKHKLRARLAGATRRKQRGPMFTEEEYQRLLERG LTSDEIRDMVDQIYDKEVAGFPDWEVMDDGYDPDEDWVFETDTKFGQRNVKVPAFSQY LDRDYESTDVEEMLKSLTLADIAAIGPLYPIVQRSAGTALCPAVLCMVDRYAALNGLS LPTSGLSYSQRKVPPKNRPEGPTPSGPEIHKLDAWYDLREPPERYVVPDDYPVVCNLP INRPIYDDKVVDDPLLGLLPPCEPDLPYGPAVWGPEAYTKSFEKFCYAQPSRFWEDYP EECRFADLQWRKHYNFLDGSRVIHITATDKNMDSTPGYPKCELHDSERDYLERHGWGP YIREFSRVDAGECPKVLWYCFLKKEQLKKEKILDGDIRQIVCPDAIYSRIGAALEQHQ NSLMKKHTTDSSGQCGWTPFYGGFERTIRRLDKNYVVEFDWTRFDGTIPRELLRHIKN LRWEKMDPSHRERYRHVHKWYVDNLLTRYVLMPTGEVTIQRRGNPSGQISTTMDNNMV NYWLQAFEFAYLNKGKDIHTLWREYDTIVYGDDRLNTTPVLTENYVERVVSMYRNVFG MWVKPDKVKVHDGVVGASFCGFTVGDRYQPIPTNPDKLWASLVTPCQKLPDDIALCGK LLSFKILMHNSEGHPFKDYIEKCIAAIGPSVGIPKFTDEQLDYLWRGGPKNIPNG*" gene 130..2271 /gene="ORF1a" CDS 130..2271 /gene="ORF1a" /codon_start=1 /product="nonstructural protein nsp1a" /translation="MIEDRDRVKREHADLCLQHELLRAELAQHRKEYAQTYRVRFSWP TMLALVFLGFSLCWHGSQAFEATTTTKTTMAVDPSAMLRLNVWLDEFIANAKKTIHTH HTTVVNIARASPTWIIVNAVMPYSWTLISILLGVISVYKAEHKVLSILFLCAATLSGG DWVFITTASYQTIISAIIQVLCVLVSHFDPLGAMCLSTVALFVTFLASMCLSSTDFVH HVRAASINTVVLIVSILLRTLALPAMPLAIALALVRAYHTLTTVSGATVEIRSEDGKV VSKEPVRPGILFKFKQALSRLRQVRSTMPPLVRVNPSAVLRIETPEGVGTGFLCANYI VTAGHVVGSNKVVSACVGQAKYQAQVVRHVPGKDIALLKIPQQLQTYPRLKLASKIDV AWVCVYSPDADGAIIQSVVPGHQVDECIDYAVPTRDGMSGAPLVNPDGRVMAVHLTNT GFTGGAQIITQVDIIDPPKTTATEDKLRAELEELKKQLNKCSQSTTNEQDIVNLVRAA IGREMTILRSEINRELGFQQAKGKTKHKLRARLAGATRRKQRGPMFTEEEYQRLLERG LTSDEIRDMVDQIYDKEVAGFPDWEVMDDGYDPDEDWVFETDTKFGQRNVKVPAFSQY LDRDYESTDVEEMLKSLTLADIAAIGPLYPIVQRSAGTALCPAVLCMVDRYAALNGLS LPTSGLSYSQRKVPPKNAQRAQRHRAQKSIN*" gene 3727..5988 /gene="ORF2" CDS 3727..5988 /gene="ORF2" /codon_start=1 /product="capsid protein precursor" /translation="MASRRNARAMRSTTNIVVRNGTTAQAGRPTRQQQTQQQATRARR RRRRANQVSVRVLPTALSTRRATPRRAPQGNRVVVQKIVTTLGTVGSNGSGNIETELA VLLNPCTMKEATGSNSFGPLQIYASTYSLFSMRSLRLHLKPLVGSSAVSGTAVRMSWN PTNNPTQVSWSALGARKHSDTTPGKDGRFFLSARDLKGPKDGWYKTNTKGDPMLSFAG SLEVHTLGETRSTYQNGPFTGGLFLAELETVWAFKDYSQQPGLMNLVKGDSTGDATIT TDEGGRIILRTPPSTALARAAATTSAAEIIWMVTDAVITAGASAFPPPFSWLLRGGWW FLKRIAGAPVRAGEETFVVYSSINDARADVPCIADTANAEAVSVGQLHFQQITPGNTG ISVDIPQTRVVYDQFYGLGEVFVPSRVSRLKHNTLDEYIPGYLDWNFLNDGNQNPTTG VAFKADGVTRATYNVYKVEFNQQIDVDMFRHKIPIYIVTTSNTSGILVGVAVAKSYSQ FVQNTTWRVDNFLMYATITEGANYDQNWRVMSANYPKGPNWGVEMSVVTKPGFVRAQF QQGNWYVLQFTCYAPAGHPVVRQFVCGGEVVGAVSNKTIELGTQNYPPTVLEGDDTLA PYYGSGFQFQPFRDGEINVSNTLAHTFEDAMEHLDELTLDDTMEEPGDMELAPGDHYS DPPLSVLVVRPEAQDLYDMLVQTSTDRAARLAVNQIHPSDEYIRFGEMYHDALADGLS PPSARAYALGLDV*" BASE COUNT 1540 a 1440 c 1582 g 1500 t ORIGIN 1 gggttaacag cgagtacggt cattggtgat gagtggcgca cgtttgtgtg tgagaagttt 61 ggttgtaagc atatattaca ggaggtgaat tgtattccag accatcaggc aaccatttta 121 acagccgctc tgatcgagga tcgagatcgc gttaaacgtg aacatgctga cctatgtctg 181 cagcacgagc tgctgcgagc tgagctggca caacaccgca aggagtatgc ccagacgtac 241 agggtgcgct tcagctggcc cacaatgtta gcattagtgt tcctgggctt ttcattgtgc 301 tggcatggat cacaggcttt tgaggcaact acaacgacaa aaaccaccat ggctgtggac 361 cctagtgcca tgcttaggtt aaacgtgtgg ttggatgagt tcattgctaa tgctaagaaa 421 acgatccaca cccatcatac gaccgtggtc aacatagcac gtgcttcacc cacctggatc 481 atagtaaatg cggtcatgcc ttattcgtgg accctgatat cgatcttgct aggggtaata 541 tccgtgtata aagctgaaca caaagtctta tcaatactgt ttttgtgtgc agctaccctt 601 agcggtgggg attgggtttt tataacgact gcatcgtatc aaactataat aagtgctatc 661 atccaggtgt tgtgtgtctt agtgtctcat tttgacccct tgggcgccat gtgcttatcc 721 acggttgcgc tgtttgttac cttcttggct agtatgtgcc tgtccagcac tgactttgtg 781 caccacgtgc gtgctgcatc catcaatacc gtagtcctta tagtgtcaat acttcttagg 841 acactcgcgc tgcctgcaat gccactggcg atagcattgg ctttggtgcg cgcataccat 901 acattgacca cggtgtctgg tgccacagtt gagatccgta gtgaggacgg caaagttgtc 961 tccaaagaac cagtgcgacc aggaatactt tttaaattca aacaggctct tagcagactc 1021 cgacaagtcc gatcaaccat gccaccccta gttcgagtga atcccagcgc tgtacttcgc 1081 attgaaacac cagaaggtgt cggaacgggg ttcttgtgtg cgaactacat tgtcacagcc 1141 ggtcatgttg tgggttctaa caaggtagtc tcagcatgtg ttggccaagc caaataccag 1201 gcgcaagtgg tcaggcatgt acccgggaaa gacatcgccc tgcttaagat cccgcagcag 1261 ttgcaaactt accctaggct taaactggct agcaagattg atgtcgcgtg ggtatgtgtc 1321 tactcgcctg atgctgatgg cgccatcata caatctgtcg ttccaggcca ccaggtcgat 1381 gagtgcattg attacgcggt ccccactcgt gatggtatgt ctggtgcgcc attggtgaat 1441 cctgacggtc gtgttatggc cgttcatcta accaacaccg ggttcactgg tggggctcag 1501 ataatcaccc aggttgatat catagaccca cccaagacaa cagccaccga ggacaagtta 1561 cgggccgagc ttgaagagct aaagaaacag ctcaacaagt gttcgcagtc gaccacgaat 1621 gaacaagaca ttgtgaactt ggtgcgcgct gccatcggcc gtgaaatgac aatcctgagg 1681 tccgaaatca acagggagct cgggttccag caggcaaaag gtaagacaaa acacaagcta 1741 cgagcccgtc ttgctggggc tacgcggcgc aagcagcggg ggcctatgtt cacggaagaa 1801 gagtaccaac gccttcttga acgtggtcta acgtcagatg agatccgtga catggttgac 1861 cagatatatg ataaagaggt tgctggattc cccgattggg aggtaatgga tgatggctat 1921 gatccagatg aggattgggt gtttgaaacg gacacgaagt ttggacaacg taatgtgaaa 1981 gtaccagcat ttagtcaata tcttgaccgg gactatgaat ccactgacgt ggaggagatg 2041 ctcaagtcgc tcacccttgc agacatagca gctatcggtc ctctctatcc cattgtgcaa 2101 aggagcgctg ggacggccct atgcccggca gtgctttgca tggtcgatcg ctatgctgcc 2161 ctcaatggcc tatcactacc aacttcaggt ttaagctact cccaacgcaa agtcccgcca 2221 aaaaacgccc agagggccca acgccatcgg gcccagaaat ccataaacta gatgcttggt 2281 atgatttacg ggagccgcct gaacgatacg tggttcctga cgattatcca gttgtgtgca 2341 accttcccat aaataggccc atctatgatg ataaagttgt tgatgatcca ttgcttgggt 2401 tgttgccgcc gtgtgagcca gacctaccct acgggccagc agtgtggggt ccagaagcat 2461 acaccaagtc ctttgagaag ttttgctacg ctcaaccatc acgcttctgg gaggattacc 2521 ccgaggagtg caggtttgcg gacctgcaat ggcgtaagca ttataacttt ctggatggat 2581 ctcgagtcat acatataaca gctacagata aaaacatgga ctcgacacct ggttacccca 2641 agtgcgagct gcatgatagt gagcgggact atctggaacg ccatgggtgg ggaccctaca 2701 tacgtgagtt tagcagggtg gatgctggag aatgtcccaa ggtgttatgg tattgtttct 2761 taaagaagga acaacttaag aaagagaaga tactggatgg tgatataagg cagatagtat 2821 gccctgatgc catatactca cggataggtg cagcccttga acagcaccaa aactcattga 2881 tgaagaagca cacaacagac agtagtgggc aatgtggttg gactcccttt tacggtggct 2941 ttgagcgtac gatacgccgt ctggacaaaa attatgtggt agagtttgat tggacgcgtt 3001 ttgatggaac cataccacgt gagctgttac gccatataaa gaacctgagg tgggagaaga 3061 tggacccctc ccatcgtgag cgttatagac acgttcacaa gtggtacgtt gacaacttgt 3121 taacgcgtta tgtgctgatg ccaactggcg aagtcacgat tcaacgtagg ggtaacccat 3181 ctggccaaat atccaccacg atggacaaca acatggtgaa ctactggttg caagcgtttg 3241 agtttgcgta cctaaataag ggcaaagaca tccatacctt gtggcgtgag tatgatacaa 3301 tagtgtatgg ggatgacagg ctcaatacga caccagtttt gacagaaaac tatgttgagc 3361 gtgttgtttc catgtacaga aatgtctttg gtatgtgggt taagccagat aaagtgaaag 3421 tccatgatgg tgttgttgga gcctcgtttt gcggcttcac agttggcgat cgttaccaac 3481 ctataccaac caatccagac aagctgtggg caagccttgt gacaccatgc cagaaacttc 3541 ctgatgatat tgctctgtgt gggaaactcc ttagttttaa aatcctaatg cataacagtg 3601 aaggtcatcc atttaaggac tacattgaaa agtgcattgc tgcaattggc ccatccgtcg 3661 gtatccctaa atttactgac gagcagttgg attatctttg gaggggagga ccaaagaata 3721 ttcccaatgg ctagtaggcg taacgcccgt gctatgcgta gcacaactaa cattgtggtg 3781 cgcaatggga caacagctca agcagggagg ccgacgcgtc aacagcaaac tcagcagcaa 3841 gcgacgcgtg cgagacgacg tcgtagaaga gccaaccaag ttagtgtgcg ggtgcttccc 3901 actgcgttgt ctactcgacg tgcaactcct aggcgtgcac ctcaggggaa ccgcgtcgtg 3961 gtccagaaaa ttgtcacaac gcttgggaca gtcggttcaa atgggtcggg caacatcgag 4021 actgagttag ccgtcttact taacccgtgc acgatgaaag aggcgacagg ttccaattcg 4081 tttgggcccc tacagattta tgcttcaacg tatagcctct tttctatgag atcattacgg 4141 cttcatctta agccacttgt tggctcttcc gctgtgtcag ggacggctgt gcgcatgtca 4201 tggaacccaa ctaataaccc aacacaagtg tcgtggtcag cactgggggc tcgcaaacac 4261 tctgacacca ccccgggcaa agatggcaga ttcttcctta gcgctcgtga tcttaagggg 4321 cccaaggatg gatggtacaa gaccaacact aagggtgacc ccatgctcag ctttgctggc 4381 tcgcttgaag tgcatacact gggagaaacc cgcagtacat atcagaatgg accgtttact 4441 ggtgggctct tccttgctga gctggagact gtgtgggcct tcaaagatta tagccagcag 4501 cctggcctaa tgaacttggt caaaggcgac tccactggtg atgcaaccat aacaactgat 4561 gagggaggta ggataatcct gcgcacccct ccgtcgacag ccctcgcgcg tgcagcagcc 4621 actacatctg ctgctgagat aatttggatg gtgaccgatg cagtcattac tgctggtgct 4681 agtgcctttc cacctccgtt ctcttggtta ctgcgcggtg gctggtggtt cctaaaacgt 4741 atcgcgggtg ccccagtacg cgcaggcgaa gagaccttcg tagtttactc cagcataaat 4801 gatgcgcgag cagatgtccc gtgcattgcc gatactgcga atgcggaggc tgttagtgtt 4861 ggccagctcc acttccagca gatcacgcct ggtaacacag gcatctcggt tgacatcccc 4921 cagacgcgtg ttgtctatga ccagttttac gggttggggg aggtgtttgt accatctagg 4981 gtttcgagac tcaaacataa taccctggac gagtatatac cagggtactt agattggaac 5041 ttcctcaatg atggcaacca aaaccccacc actggtgttg cttttaaagc tgatggtgtt 5101 actagggcaa cctacaatgt gtataaggtg gagttcaacc aacagattga tgtcgatatg 5161 tttaggcaca agatccctat atacattgta acaactagca acactagtgg tatactggtc 5221 ggtgttgccg ttgctaagtc gtactcccaa tttgtgcaaa ataccacttg gcgtgtggac 5281 aacttcctga tgtacgccac catcacagag ggagcaaatt atgatcaaaa ctggcgggtg 5341 atgagtgcca actaccccaa aggaccaaat tggggggtgg agatgtcagt tgtgactaag 5401 cccgggtttg ttagagcaca gttccaacag ggtaattggt acgtgcttca gttcacgtgc 5461 tatgccccag ccggccaccc tgttgtgcgt caatttgtct gtgggggaga agttgttggc 5521 gctgtctcga ataaaacaat tgaacttggg acccaaaact acccaccgac agtgctagaa 5581 ggagacgaca cacttgcccc ctattatggg tccggttttc agtttcaacc cttccgtgat 5641 ggtgagatca atgttagcaa tacattagcc cacacatttg aggatgcaat ggaacacctt 5701 gatgaactta ccttggatga tacaatggag gaacctggtg acatggagct tgcaccaggt 5761 gaccattatt cagacccccc acttagtgtc ctcgttgttc ggcccgaggc gcaggattta 5821 tatgacatgc tagtgcaaac tagcacagac cgagccgctc ggttggcagt taatcaaatc 5881 catccgagtg atgagtacat tcgctttggc gagatgtacc atgatgcatt ggctgatggc 5941 ttatccccgc ccagcgctag ggcatatgcc ctggggctgg acgtgtagcc gtgcatctgt 6001 gattgttttc tgttttctgt gtagttttag tttgattgca taggtgaagg gaaaaaaaaa 6061 aa // LOCUS CapAstV-G5.1 6232 bp RNA linear 14-JAN-2019 DEFINITION CapAstV-G5.1, partial sequence. ACCESSION CapAstV-G5.1 VERSION KEYWORDS . SOURCE Caprine Astrovirus G5.1 ORGANISM Caprine Astrovirus G5.1 Unclassified. REFERENCE 1 (bases 1 to 6232) AUTHORS Kauer,R.V., Koch,M.C., Boujon,C.L., Werder,S. and Seuberlich,T. TITLE Discovery of novel astrovirus genotype species in small ruminants JOURNAL unpublished REFERENCE 2 (bases 1 to 6232) AUTHORS Kauer,R.V., Koch,M.C., Boujon,C.L., Werder,S. and Seuberlich,T. TITLE Direct Submission JOURNAL Submitted (14-JAN-2019) DCR-VPH, University of Bern, Bremgartenstrasse, Bern, 3012, Switzerland COMMENT Bankit Comment: TOTAL # OF SEQS:5 ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6232 /organism="Caprine Astrovirus G5.1" /mol_type="genomic RNA" /strain="CapAstV-G5.1" /host="Capra hircus" /tissue_type="brain" /country="Switzerland" /collection_date="2017" gene 11..3903 /gene="ORF1ab" CDS join(11..2395,2395..3903) /gene="ORF1ab" /ribosomal_slippage /codon_start=1 /product="nonstructural protein nsp1ab" /translation="MNRADEAIASGDQIQLKARFDARCWFDELRRINPIVPWYITYQP RMYFYPTLKSDRVLTASTVDEDEWRTFVLTTKGCEHVAVEVNHIPDHQATILTAALMN DRANRKRELSDLKLENQILRAELAQHRNEQATTTRFVLSWPTIFALVFLGFSLFWHSA QALTTTSTTDSTDPMGMLRLNIWLEDFIKNAKNTIHTHHTTVVGIIQSSPTWIMVNFV MPYMWTLVVICLGLISVYKSEQKVLSLLFLCASSLSGGDWLMLSTASAQTIPSAIAQI LCVLVSHVDPLGSLCLSAVIMGVTFLTSMCMSNVNFIQHSRASAINTVTLVISVMLRT LKLPALPIACALALVRAYTIMTSASGSTIEIRSEDGKVVAKEPAKPGVLFRFKQALRK FGQVRASVAPLVRVNPSAVVRIETPDGIGTGFACANYIVTAGHVVGTHKAVSICVGKA KYQSTLVRHIDGKDIALLKMPQQLQGLPRLKIASKIETEWVCVYSPDEEGAIVQSVVP GHQVDECINYAVPTRDGMSGAPIVNPDGRVMGVHLTNTGYTGGAVILTLQDVTDPPKS NPTEDKLKAEIEELKKQLAACNQSSTSEQEIVNLVRVAIGREMQILRSELNKELGFSQ AKGKTKGKNRQKMMGARKRKQRGPVFTEEEYQKLIDEGLTSDQIRDMVDDLYIKEAAG YPEWEPLDDGYDPEDDWVFESEYDFGQKKTVVPSFKQYLARDYDASEVEEMLRSLTPS DIEALGPVYHVLVKNTSSPLCAPLICIADRYAAANGLAPPSFGMRYTQRRVPPKNRAA GPSPAGPEIHKLDGWYALRQPPERFVVPDDYPVVCNLPINRPIFDDKVPDDPLLGLLP PCDPDLAFAPAVWGPEAYTKSFEKFSYAQPSRFWELYPEECKFADHQWRKHYNFLEDT RVKHITATEKNIDSTPGYPKCEVHDSERDYMECYGWGPYIKEFKRIDKGAKPRVLWYC FLKKEQLKKEKIRDADIRQIICPDVIYSRIGAALEQHQNDLMKKHTNDSSGQCGWTPF YGGFEAKMRRLNRGNIIEFDWTRFDGTIPRELLKHIKDLRWEKINKIHRERYKHIHDW YVENLLTRYVLMPTGEVTIQRRGNPSGQISTTMDNNMVNYWLQAFEFAYINKGKDIYA LWDDYDTIVYGDDRLTSTPVLPDDYVPKVVAMYKDVFGMWVKPEKVKIHPTIIGASFC GFTVGPNYQPIPTSPEKLWASLVTPCQKLPDDNALYGKLLSFKILMHNSEDHPFKEYV EKCLAALEEHRSLPRLTDEQLDRLWRGGPKINPNG*" gene 11..2440 /gene="ORF1a" CDS 11..2440 /gene="ORF1a" /codon_start=1 /product="nonstructural protein nsp1a" /translation="MNRADEAIASGDQIQLKARFDARCWFDELRRINPIVPWYITYQP RMYFYPTLKSDRVLTASTVDEDEWRTFVLTTKGCEHVAVEVNHIPDHQATILTAALMN DRANRKRELSDLKLENQILRAELAQHRNEQATTTRFVLSWPTIFALVFLGFSLFWHSA QALTTTSTTDSTDPMGMLRLNIWLEDFIKNAKNTIHTHHTTVVGIIQSSPTWIMVNFV MPYMWTLVVICLGLISVYKSEQKVLSLLFLCASSLSGGDWLMLSTASAQTIPSAIAQI LCVLVSHVDPLGSLCLSAVIMGVTFLTSMCMSNVNFIQHSRASAINTVTLVISVMLRT LKLPALPIACALALVRAYTIMTSASGSTIEIRSEDGKVVAKEPAKPGVLFRFKQALRK FGQVRASVAPLVRVNPSAVVRIETPDGIGTGFACANYIVTAGHVVGTHKAVSICVGKA KYQSTLVRHIDGKDIALLKMPQQLQGLPRLKIASKIETEWVCVYSPDEEGAIVQSVVP GHQVDECINYAVPTRDGMSGAPIVNPDGRVMGVHLTNTGYTGGAVILTLQDVTDPPKS NPTEDKLKAEIEELKKQLAACNQSSTSEQEIVNLVRVAIGREMQILRSELNKELGFSQ AKGKTKGKNRQKMMGARKRKQRGPVFTEEEYQKLIDEGLTSDQIRDMVDDLYIKEAAG YPEWEPLDDGYDPEDDWVFESEYDFGQKKTVVPSFKQYLARDYDASEVEEMLRSLTPS DIEALGPVYHVLVKNTSSPLCAPLICIADRYAAANGLAPPSFGMRYTQRRVPPKNGQR GPRQRAQKSTN*" gene 3896..6145 /gene="ORF2" CDS 3896..6145 /gene="ORF2" /codon_start=1 /product="capsid protein precursor" /translation="MASNNTRRTARNTTNIVVRNGPAAPQGAAAPNRGQGRRRGVQRR ARRQQRAQVMVRVQPNQTSRRGRIPRRPRINNRVVFQKITTTLGTVGSNGSEQIECEL TCLMNPATMKEATGSNSFGPLGIYASTYSLFRMTKCVVKLKPLVGDSAVSGTITRVSW NPTSAPTQTSWSALGARKHIDVTPGKIGIFTLTARDLVGPKGGWYKTNTKGDPMMSFA GTLECHTLGRTMSTYRNEAFTGGLFLAELETEWQFKDYAQQPGMVNLLKGEDTTQAQI VTSSDGKIQLQLPANSRMARAATTTASEIIWLVTDTIINAGASAFPPPFNWLFRGGWW LVKRAAGAPVRAGEVTFDVYSSISDARAGVPCISTTPSSPPVSIGGLHFQQVTPGNVG IGDDIVRESRSIDIQPVSSPPRVLAYSGMYDTTFIPGYHVLYEKNNVPRSERGLAVPV QEGYITTYNYGKVEVDARPPPTRGIPVYLATSNTNRTQIGLAVSSTSTTLDNGGTPIT LSTMLFYCTESRNYDFTQSNDGLFRVADLSYSQAQAQIILRTRTVNKRKVLVASGSWY VLQFFCYGAAHETYRVDTPMTTEIRTPQNAWPASETTITYTPDSGNAEAGLTPGYSTS ILLGDIQTYTVTRYTRAMVDEEYHDLPPLEDEDDADDEDEDLTDEQLEMGPFDDYDTP PMSRLVVHPDARKTYELLLELYSERDARLAVNQLKPSDEYKEFVALYHDALVDGLSPR SARAHALGI*" BASE COUNT 1652 a 1574 c 1534 g 1472 t ORIGIN 1 ggcgctcttt ctgaatcgag cggacgaagc tattgcctcc ggtgatcaga tccagctcaa 61 agctcgcttt gacgctaggt gctggtttga tgagttgagg aggatcaacc ccatagtacc 121 gtggtatatc acatatcagc cacgtatgta cttctaccca actctcaaat cggaccgcgt 181 cttgacagcg agcactgttg atgaggatga gtggcgaact ttcgtgctca ccacaaaggg 241 atgtgagcac gttgcagttg aggttaacca tatacccgat catcaagcta caattctcac 301 agcagcgctg atgaatgatc gtgccaaccg gaagagggaa ttatctgacc tgaagttgga 361 gaaccagatc ctgagagcgg agcttgcgca acaccgcaac gaacaggcaa ccacaacgag 421 atttgtcctc agttggccta ctatcttcgc cctcgtgttt ctgggtttct ctttattttg 481 gcattctgct caggctctaa caaccacttc cacaacggat tccactgacc caatgggtat 541 gcttcgcctc aacatttggc tagaggactt cattaaaaat gcaaagaaca ccattcacac 601 ccatcatacc accgtggttg gaattatcca atcatcacca acctggatca tggtcaactt 661 tgtaatgcca tacatgtgga cacttgttgt catctgcctg ggcctcatct ctgtctataa 721 atcggagcag aaggtgcttt ctctcttgtt cctgtgtgct tcatctctta gtgggggtga 781 ctggctgatg ctatccacgg cctccgcaca aacaatccct agtgctattg ctcagatctt 841 gtgtgttctc gtatcacatg tggaccccct tggatcatta tgcctctcag cagtcattat 901 gggtgtgaca ttcttgacaa gcatgtgtat gtcgaacgtg aattttattc aacactcaag 961 agcatcagcc atcaacacag tcactttggt tatatcagta atgttgagga cactaaaact 1021 accagcccta ccaatcgcat gcgctctagc actcgtgaga gcatacacca tcatgacttc 1081 agcaagtggc tctaccattg aaattcgatc tgaagatggc aaagttgttg ccaaagaacc 1141 tgccaaaccc ggtgttctct tcagattcaa gcaagcactt cgtaaatttg gccaagtcag 1201 ggcgagtgtt gctccacttg taagggtaaa tccatcagcc gtcgttagga ttgagactcc 1261 tgacggcatt gggaccggtt tcgcgtgcgc gaactacatc gttacagcag gtcatgtggt 1321 tggcacacat aaggcagtct caatctgtgt tgggaaggcg aaatatcaat caactcttgt 1381 ccgccatatt gatgggaagg acattgccct cttgaagatg ccccagcagc ttcaagggtt 1441 gcctcgcttg aaaatcgcat ccaaaattga gactgagtgg gtctgtgtct actcgcctga 1501 tgaagaaggt gcaattgttc aatcagtcgt ccccgggcat caggttgacg agtgcatcaa 1561 ctatgcagtc ccaacgcgcg atggtatgtc cggagcaccc attgtgaacc ctgatggtag 1621 agtcatggga gtccacctta ctaatactgg ctatactggg ggggcggtta tcctgacatt 1681 gcaggacgtc actgatccac ccaagtctaa ccccactgaa gacaaactca aagccgagat 1741 tgaggaattg aagaaacaac tagcagcctg caatcagtct agcacctcgg aacaggaaat 1801 tgtcaacctt gtccgcgtcg ctatcgggcg cgagatgcaa atcctgcgat ctgagctcaa 1861 caaggagctc ggcttctcac aggctaaggg gaagacaaag gggaagaaca gacagaaaat 1921 gatgggagcc aggaagcgca agcagcgtgg cccagttttt actgaggaag agtatcagaa 1981 gctcatcgat gagggtctca catcggatca aattcgtgac atggttgacg acctttacat 2041 aaaggaggca gccggttacc ctgagtggga accccttgat gatggttatg atccagagga 2101 tgattgggtt tttgagtccg agtatgactt tggccaaaag aagactgttg ttccatcctt 2161 caagcagtat ctggccagag actatgatgc cagtgaagtg gaggaaatgt tgcgttccct 2221 cactccatcg gacatcgaag cccttggtcc tgtctaccac gtgctcgtca aaaacacctc 2281 gagccctctc tgtgcccccc tgatttgcat tgcagatagg tacgcagctg ctaacggtct 2341 ggctccaccg tcatttggga tgcgctacac ccaacgtcgt gtcccaccaa aaaacgggca 2401 gcggggccct cgccagcggg cccagaaatc cacaaactag acggctggta tgcgctccgc 2461 caaccaccgg agcgatttgt cgtccctgac gactacccag tggtttgtaa tctgcccata 2521 aatagaccca tttttgatga caaagtccct gatgatccac ttcttggttt gctcccacct 2581 tgcgacccag atttggcctt tgcccccgcg gtgtggggcc ctgaagccta cacaaaatca 2641 tttgaaaaat ttagttacgc ccaaccatca agattttggg agttgtatcc tgaagagtgc 2701 aaatttgctg accaccagtg gcggaagcat tacaacttcc tcgaagacac tcgagtgaag 2761 catataactg ccactgaaaa gaatattgac tcaactccag gataccccaa gtgtgaagtt 2821 catgacagcg agcgtgacta tatggagtgt tatggctggg gaccctacat caaagagttc 2881 aaaaggatag acaaaggggc aaaaccaagg gttctgtggt attgtttcct gaagaaagaa 2941 caactcaaaa aggagaagat cagagacgcc gacattcgcc aaataatatg ccctgatgtg 3001 atctactcgc gtattggcgc tgctttggag caacaccaaa atgacttgat gaagaaacat 3061 actaatgaca gcagtggtca atgcggctgg acacccttct atggaggttt tgaggcgaag 3121 atgcgtcgtc tgaaccgcgg aaacatcatt gaatttgact ggacgcggtt tgacggaacg 3181 ataccacgcg aactcctcaa gcatattaag gacctacgct gggaaaagat caacaaaatc 3241 caccgtgagc gctataagca catacatgac tggtatgttg agaacctttt gaccagatat 3301 gtgcttatgc ccacaggtga agtcaccatc cagcgtagag gcaacccttc aggccaaatc 3361 tccacgacta tggataacaa tatggtaaac tactggctcc aggcctttga gtttgcctac 3421 attaacaagg gcaaagatat ctatgccctg tgggatgatt atgacaccat agtctatggg 3481 gatgacaggt tgacatcgac acctgtcttg cctgatgact acgttcccaa ggtagttgct 3541 atgtataaag atgtgtttgg gatgtgggtt aagccagaga aagtcaagat tcatcccacc 3601 atcattggag catcattctg tggctttaca gtgggtccta attaccaacc aattccaaca 3661 agcccagaga agctgtgggc cagccttgtg acaccctgcc aaaaactacc tgatgataat 3721 gccctctatg ggaagctcct tagctttaag atcctaatgc ataattcaga ggaccatcct 3781 ttcaaggagt acgttgagaa gtgccttgct gcattggagg aacaccgctc cttaccacgc 3841 ctcacagatg agcagctgga tcgtctttgg aggggaggac caaagataaa cccaaatggc 3901 tagcaacaac acacgccgca cagcgcgcaa cacgactaac atcgtggtgc gtaatgggcc 3961 agcagctccc caaggggcag ccgcccctaa cagaggtcaa ggcaggagga gaggagtgca 4021 gcgacgagct agacgccaac aacgggcaca agtcatggtg cgggtgcagc ccaatcaaac 4081 ttcgcgtcgc gggaggattc ctaggcgccc gaggatcaat aaccgtgtgg ttttccagaa 4141 gatcacgacg acactcggta cagtcggttc aaatgggagt gaacaaatag aatgtgagtt 4201 gacttgcctc atgaatccag caacgatgaa ggaggctacg ggcagcaata gctttggccc 4261 gttaggcatc tatgcctcca cttattcact gttccggatg acaaaatgtg tcgttaaact 4321 caaaccactc gtaggggaca gtgcagtctc ggggacaata acccgtgtct cttggaaccc 4381 cacatcagcc cccacacaaa catcgtggag tgcacttggg gctcggaaac atatcgatgt 4441 aacaccaggg aagatcggaa tctttacgct gaccgcgcgt gacttggttg gccctaaagg 4501 tggttggtac aagacgaaca ccaagggaga cccaatgatg tccttcgctg gaacactgga 4561 atgccacaca cttgggcgta caatgtcaac ctaccgcaat gaggctttca ctggtggctt 4621 gttccttgcc gagctggaaa cagagtggca gttcaaggat tatgcccagc agcctgggat 4681 ggtaaatttg cttaaaggtg aggatactac acaggcccaa attgtgacct cttctgacgg 4741 gaagattcaa ctccagctcc ctgccaactc taggatggcc cgcgctgcca ccacgacagc 4801 tagtgagata atatggcttg tcactgatac catcatcaat gctggtgcca gtgccttccc 4861 gccacccttc aattggctat tcaggggtgg ctggtggctt gtgaaacggg cagctggtgc 4921 gcccgttcga gcaggagagg ttacattcga tgtctactcg tctatttcag acgcccgtgc 4981 gggcgttccc tgcatctcaa ctacacctag ctcgccacct gtatccatag gtggtcttca 5041 ttttcagcag gtcacaccag gaaacgtggg cattggagat gacatcgtga gggagtcgcg 5101 atccatcgac atccaaccag ttagttcacc accgagagtc cttgcttact ctggcatgta 5161 tgacaccacc ttcatacccg gctaccatgt gctttatgag aagaacaatg tacctcgctc 5221 agagcgaggc ttggcagtcc cagtccaaga ggggtatatc acaacctaca actatggtaa 5281 agttgaagtg gacgccaggc cacctccaac taggggcata ccagtttatc tggcaacaag 5341 caatacaaat agaacgcaga ttgggctcgc cgtctccagc acctcaacca cgctggataa 5401 tggtggaacc ccaatcacct tgtcaaccat gctgttctat tgcactgagt cgaggaatta 5461 tgacttcacc cagagtaatg atgggctctt tagggttgca gatctttcat acagccaggc 5521 acaggctcag atcatcctaa ggacacgcac agtcaacaaa aggaaagtcc ttgtggcatc 5581 tggaagctgg tacgtgctcc agtttttctg ctatggagct gcgcatgaga catatcgtgt 5641 tgacactccc atgaccactg aaatcaggac ccctcaaaat gcctggcctg cgagtgaaac 5701 caccataacc tatacgcctg atagcggtaa tgctgaggcc ggtcttacac ccggctacag 5761 cacatccata ctgttaggtg acattcagac atacactgta actagataca ctcgcgccat 5821 ggttgatgaa gagtatcatg acctgccacc actggaggat gaggatgatg cagatgacga 5881 agatgaggac ctcactgatg aacagcttga aatgggccct tttgatgatt atgacacgcc 5941 accaatgtcc cggttggtgg ttcatccaga tgctcgcaaa acctatgagc ttttgcttga 6001 gctttattca gaacgggatg cccgcttggc agtaaatcag ctgaaaccaa gcgatgagta 6061 caaggagttt gttgccttgt accacgatgc gttagttgat ggcctatcac ctaggtctgc 6121 aagagcccat gccttgggga tctaggatgg cgcgcgcgtc gtgcattttt attttaatca 6181 gtttttcagt ttcatttgtg atttaattag cataggtgaa ggggaaacaa aa // LOCUS OvAstV-S5.1 6195 bp RNA linear 14-JAN-2019 DEFINITION OvAstV-S5.1, partial sequence. ACCESSION OvAstV-S5.1 VERSION KEYWORDS . SOURCE Ovine Astrovirus S5.1 ORGANISM Ovine Astrovirus S5.1 Unclassified. REFERENCE 1 (bases 1 to 6195) AUTHORS Kauer,R.V., Koch,M.C., Boujon,C.L., Werder,S. and Seuberlich,T. TITLE Discovery of novel astrovirus genotype species in small ruminants JOURNAL unpublished REFERENCE 2 (bases 1 to 6195) AUTHORS Kauer,R.V., Koch,M.C., Boujon,C.L., Werder,S. and Seuberlich,T. TITLE Direct Submission JOURNAL Submitted (14-JAN-2019) DCR-VPH, University of Bern, Bremgartenstrasse, Bern, 3012, Switzerland COMMENT Bankit Comment: TOTAL # OF SEQS:5 ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6195 /organism="Ovine Astrovirus S5.1" /mol_type="genomic RNA" /strain="OvAstV-S5.1" /host="Ovis aries" /tissue_type="brain" /country="Switzerland" /collection_date="2017" gene 20..3828 /gene="ORF1ab" CDS join(20..2320,2320..3828) /gene="ORF1ab" /ribosomal_slippage /codon_start=1 /product="nonstructural protein nsp1ab" /translation="MRRIHSTAPWYISYQPRMYFFPTLRSDRVLTASTVCEEEWRTFV LTTQGCEYIAVEVNHIPDHQPTILTAALMNDRADRKRELSDLRLENQLLRAELAQHRN EERSTTKFVLSWPTIFALVFLGFSMFWHSAHGLTTTSTTDSVDPMGMLKLNAWLDKFV ENAMKTVHTHHTTLVGAIQASPTWVLVNMVIPYMWTVVVLCLGLISVYKSEHKVISIL FLCASTLSGGDWVMLATSSYQTIPSAIVQIACVMISHIDALGAMCLSVVVMFTTFLAS MCLSNVSFIQHSRAAAINTVSLVISIVLRTLRLPAMPLAIAMALARAYNVLTTTSGST IEVRSEDGKVVSKESARPGLLFRFKQACRRFAQVRSNMAPLVRVNPAAVVRIETPDGS GTGFACANYIVTAGHVVGTHKVVSVCVGKAKYQSNLIRHVDGKDVALLKMPQQLQGMP RLKIASKVDTEWVCVYSPDEEGAIVQSVVPGHQVDECINYAVPTRDGMSGSPIVNPDG RVMAVHLTNTGYTGGAVVLTLQDVTDPPKSNPNEDKLKAEIEELKKQLAACNQSNTSE QDIVNLVRVAIGREMSILRSELNKELGFSQAKGKTKGKNRQKMMGAKKRKQRGPVFTE EEYQKLIDEGLTSDQIRDMVDDLYKKEEAGYPEWEPLDDGYDPEDDWVFESEYDFGQR KTVVPSFKQYLARDYDANEVEEMLRSLTPSDIEALGPVYHVLVKNTSSPLCAPLICIA DRYAAANGLAPPSFGMRYTQRRVPPKNRTAGPSPAGPEIHKLDGWYALRQPPERFVVP NDYPVVCNLPINRPIFDDKIPDDPLLGLLPPCDPDLAFAPAVWGPEAYTKSFEKFSYA QPSKFWELHPEECKFADHQWRKHYNFLEDTRVKHITATEKNVDSTPGYPKCEAHDSER DYMECYGWGPYIKEFKRIDRGAKPKVLWYCFLKKEQLKKEKIRDADIRQIICPDVIYS RIGAALEQHQNDLMKKHTDDSSGQCGWTPFYGGFEAKMRRLNRGNIIEFDWTRFDGTI PRELLKHIKDLRWEKINKIHRERYKHIHDWYVENLLTRYVLMPTGEVTIQRRGNPSGQ ISTTMDNNMVNYWLQAFEFAYINKGKDIYALWDDYDTIVYGDDRLSSTPVLPDDYIPK VVAMYKDVFGMWVKPEKVKIHPNIIGASFCGFTVGPNYQPIPTSPEKLWASLVTPCQK LPDDSALYGKLLSFKILMHNSEDHPFKEYVEKCLAALEEHRSLPRLTDEQLDRLWRGG PKTNPNG*" gene 20..2365 /gene="ORF1a" CDS 20..2365 /gene="ORF1a" /codon_start=1 /product="nonstructural protein nsp1a" /translation="MRRIHSTAPWYISYQPRMYFFPTLRSDRVLTASTVCEEEWRTFV LTTQGCEYIAVEVNHIPDHQPTILTAALMNDRADRKRELSDLRLENQLLRAELAQHRN EERSTTKFVLSWPTIFALVFLGFSMFWHSAHGLTTTSTTDSVDPMGMLKLNAWLDKFV ENAMKTVHTHHTTLVGAIQASPTWVLVNMVIPYMWTVVVLCLGLISVYKSEHKVISIL FLCASTLSGGDWVMLATSSYQTIPSAIVQIACVMISHIDALGAMCLSVVVMFTTFLAS MCLSNVSFIQHSRAAAINTVSLVISIVLRTLRLPAMPLAIAMALARAYNVLTTTSGST IEVRSEDGKVVSKESARPGLLFRFKQACRRFAQVRSNMAPLVRVNPAAVVRIETPDGS GTGFACANYIVTAGHVVGTHKVVSVCVGKAKYQSNLIRHVDGKDVALLKMPQQLQGMP RLKIASKVDTEWVCVYSPDEEGAIVQSVVPGHQVDECINYAVPTRDGMSGSPIVNPDG RVMAVHLTNTGYTGGAVVLTLQDVTDPPKSNPNEDKLKAEIEELKKQLAACNQSNTSE QDIVNLVRVAIGREMSILRSELNKELGFSQAKGKTKGKNRQKMMGAKKRKQRGPVFTE EEYQKLIDEGLTSDQIRDMVDDLYKKEEAGYPEWEPLDDGYDPEDDWVFESEYDFGQR KTVVPSFKQYLARDYDANEVEEMLRSLTPSDIEALGPVYHVLVKNTSSPLCAPLICIA DRYAAANGLAPPSFGMRYTQRRVPPKNGQRGPRQRAQKSTN*" gene 3821..6091 /gene="ORF2" CDS 3821..6091 /gene="ORF2" /codon_start=1 /product="capsid protein precursor" /translation="MASNNTRRSARNTTNIVVRNGPAAPQGAAAPNRGQGKRRGMQRR ARRQQRAQVMVRVQPSQIPRRGRISRRPRVNNRVVFQKITTTLGTVGSNGSEQIECEL TCLMNPATMKEATGSNSFGPLGIYASTYSLFRMTKCVVKLKPLVGDSAVSGTITRVSW NPTSSPTQTSWSALGARKHIDVTPGKIGIFTLTARDLVGPKGGWYKTNTKGDPMMSFA GTLECHTLGKTMSTYRNEAFTGGLFLAELETEWQFKDYAQQPGMVNLLKGEDTQQAQI TTDSTGKIQLTMPDTSRMARAATTTASEIIWLVTDTIITAGASAFPPPFNWLFRGGWW LVKRAAGAPVREGGVTFDVYSSISDARAGVPCISTNVGSGPITIGGLHFQQVTPGNTG ISDEIPRLERSIVQPVNQNTHIITYTGMYNTDEIPGDIVWYERVGTDPRSQRGLALPV GEGVITTYNYGKVTITNRDVPTRGIPVYMIHGENFTRVQVGLAVAGNHATRELASTHQ ITLATILFYCNNFQGYTYNGTNDSTFRYTRPSYTQAQASIALNSGTVTQRRIKVDPGN WYVLQFFCYGAAYETYTINNGDNFTIKIPRDNWPTSTTINYSPLISDVTKGLAPGYST SMVMKNFNEFTIVRNSRSVEHQDTTAQDTFYDLPPLEDDDDADDEDEDLTDEQLEMGP LDDYDTPPMSRLVVHPDARKTYELLLELYSEREARLAVNQLKPSDEYKEFVALYHDAL VDGLSPRSARAHALGI*" BASE COUNT 1673 a 1521 c 1526 g 1475 t ORIGIN 1 ggggaactgg tttgatgagt tgcggaggat acattcaaca gcaccgtggt acatttcgta 61 tcagccacga atgtatttct tcccaaccct caggtcagac cgtgtcttga ctgctagtac 121 ggtctgtgag gaggagtggc gcactttcgt actcaccaca cagggatgtg agtacattgc 181 ggtcgaggtg aatcatatac ccgaccatca gcccactatc ctcacagcag cacttatgaa 241 tgatcgtgct gaccggaaga gagaattatc tgacttgcgc cttgaaaacc agcttttgag 301 agcagaactg gcccaacacc gtaatgaaga gaggagcaca accaagtttg ttctgagttg 361 gcctaccatc tttgctctgg tttttcttgg cttttctatg ttctggcatt ctgcacatgg 421 gctcaccacc acatcaacaa ccgactccgt ggatcctatg gggatgctta agctgaatgc 481 atggcttgac aagtttgttg agaacgccat gaagacagtt cacacccatc acacaacctt 541 ggttggagcc atacaggcat cacccacatg ggtgcttgtg aatatggtga taccatatat 601 gtggactgtt gttgtcctgt gtctcggcct aatatctgtc tataaatctg agcacaaggt 661 catttccatt ctcttccttt gtgcgtccac gttaagcggc ggggattggg tcatgcttgc 721 gacgtcatcc taccaaacta tacccagtgc catcgtgcag atcgcatgtg ttatgatatc 781 acacattgat gcattgggtg ctatgtgtct atctgtagta gtgatgttca caacattcct 841 agccagcatg tgcctatcta atgtgagctt cattcaacat tctcgtgcag ctgccataaa 901 cactgtgtct cttgtcattt ccattgtact gcggaccctg aggctccctg caatgcccct 961 tgcaatcgcc atggcccttg ccagagccta caatgtcttg acaacaacga gtggctcgac 1021 aattgaagtg agatctgaag atggtaaggt tgtgtctaag gaatcagcga gaccaggctt 1081 actctttaga tttaagcagg cgtgcaggcg ctttgcgcag gttagatcca acatggcccc 1141 ccttgtgcgt gtcaaccccg ctgctgtggt taggatagag acaccagatg gtagcggcac 1201 cggtttcgca tgcgcgaact atattgtcac agccggacat gtcgtgggta cgcacaaggt 1261 tgtatccgtg tgtgtgggta aagcaaaata tcagtctaac ctcatccgtc atgtggatgg 1321 taaagatgtt gccctcctta agatgccaca acagctccag ggtatgccac gccttaagat 1381 agcaagcaag gttgatacag agtgggtttg cgtttattca cctgatgaag aaggtgcgat 1441 tgtacagtca gttgtacctg gacatcaagt tgacgaatgt atcaactatg cagtgcccac 1501 tcgtgacggc atgtccggtt ccccgatcgt caaccctgat ggtcgcgtga tggcagtaca 1561 tctcactaac acaggctaca ctgggggtgc tgttgtccta accctccagg atgtgactga 1621 tccacccaag tcaaacccca atgaggacaa actcaaagcc gagattgagg agcttaagaa 1681 acagcttgca gcttgcaatc agtccaacac ctctgagcag gatatcgtca accttgtccg 1741 tgttgccatc ggacgcgaga tgtcaatcct gcgttcagag cttaacaagg aacttggttt 1801 ttctcaggct aaggggaaga caaagggtaa gaacagacag aagatgatgg gagccaagaa 1861 acgcaaacag cgcggcccag tgttcactga ggaggagtac caaaagctca tcgatgaggg 1921 cctcacatca gaccaaattc gtgatatggt tgatgacctt tacaagaaag aggaagctgg 1981 ttaccctgaa tgggagcccc tcgatgatgg ctatgatcca gaggatgatt gggtttttga 2041 gtccgagtat gactttggcc aaaggaagac tgttgttcca tccttcaagc agtatctggc 2101 cagagactac gatgccaatg aggtagagga gatgttgcgt tctctcactc catcggacat 2161 cgaagccctt gggccggtct atcatgtgct cgtcaaaaac acctcgagcc ctctctgcgc 2221 tcctctgatc tgcattgcag atagatacgc agccgccaat ggcctggccc caccatcgtt 2281 tgggatgcgt tacacccaac gtcgtgtccc accaaaaaac ggacagcggg gccctcgcca 2341 gcgggcccag aaatccacaa actagacggc tggtatgcgc tccgtcaacc accggagcga 2401 tttgtcgttc ctaacgacta cccagtggtt tgtaacttac ccataaatag acccattttt 2461 gatgataaga ttcctgatga cccacttctt ggtttgcttc caccttgtga cccagatctg 2521 gcctttgccc ctgctgtatg gggtcccgag gcctacacaa agtcatttga gaaatttagt 2581 tacgctcaac cgtcaaagtt ctgggaacta catcctgagg agtgcaagtt tgccgatcac 2641 cagtggcgta aacactacaa cttcctcgag gacacccgag tgaagcatat aactgccact 2701 gagaaaaatg ttgattcaac tccaggatac ccaaaatgtg aagctcatga cagcgagcgt 2761 gactacatgg agtgctatgg ctggggaccc tacatcaaag aatttaaaag gatagacaga 2821 ggtgcaaaac ccaaggtcct gtggtattgt tttctgaaga aggaacagct taagaaagag 2881 aagatcagag atgctgatat tcgccaaata atatgtcctg atgtgatata ctcacgcatt 2941 ggtgctgcat tggaacaaca tcaaaatgac ctgatgaaga agcacactga tgatagcagc 3001 ggtcaatgcg gctggacacc tttttacggg ggctttgagg cgaagatgcg tcgcctgaac 3061 cgcgggaaca ttatcgagtt cgattggacg cggttcgatg ggacaatacc acgtgagctc 3121 ctaaaacaca tcaaagatct gcgctgggag aagatcaaca agatccaccg agagcgttat 3181 aagcacatac atgattggta tgttgagaat cttttgacca ggtatgtgct catgcccact 3241 ggtgaggtaa ccattcagcg cagaggcaat ccatcgggcc aaatttctac aaccatggac 3301 aacaatatgg tgaactactg gttacaagcc tttgagtttg cctatattaa caagggaaag 3361 gacatctatg ccctctggga tgattacgat acaatagtct atggtgatga caggctatca 3421 tcaacgcctg ttctgcctga tgactacatc cccaaggttg tcgccatgta taaggatgtg 3481 tttgggatgt gggtcaagcc agagaaagtc aagatccacc ctaatatcat tggagcatct 3541 ttttgtggat ttacagtagg cccaaattac cagccaattc caacaagtcc agagaagctg 3601 tgggctagcc ttgttacacc ttgccaaaaa ttgccagatg acagtgccct ctatgggaag 3661 ctccttagct ttaagatcct aatgcataac tcagaggacc atcctttcaa ggagtatgtc 3721 gagaagtgtc tcgctgcatt ggaagaacac cgctccttgc cacgcctcac agatgagcag 3781 ctggatcgtc tttggagggg aggaccaaag acaaacccaa atggctagta acaacacacg 3841 ccgttcagcg cgcaacacga ctaacatcgt ggtgcgcaat gggccagcgg ctccccaagg 3901 agcagccgcc cctaacagag gtcaaggaaa gaggagagga atgcagcgac gagccagacg 3961 ccaacagagg gcgcaggtca tggtgcgggt gcagcccagt caaattccgc gtcgcgggag 4021 gatttctagg cgtccgaggg tcaataaccg tgtggttttc cagaagatca cgacgactct 4081 cggaacagtg ggctcaaatg gaagcgaaca gatagaatgt gagttgacat gcctcatgaa 4141 cccagctacc atgaaggaag caactggtag caattccttt gggccgttgg gcatctacgc 4201 atccacatac tcattgttcc gtatgaccaa gtgtgtcgtc aagcttaaac cactggttgg 4261 tgatagtgca gtgtcgggta cgataaccag ggtatcatgg aaccctacat catcacccac 4321 ccaaacctca tggagtgctc tcggggctag aaagcatatt gatgttacac ctggaaaaat 4381 tggtattttt accttgacgg ccagagacct ggtcggccct aagggtgggt ggtacaaaac 4441 aaacaccaag ggcgatccca tgatgtcctt tgcaggaacc ttggagtgcc acactctagg 4501 gaagaccatg tccacctacc gcaatgaggc ctttacagga gggttgtttt tggcagagct 4561 tgaaacagag tggcagttca aagattacgc ccaacagcct gggatggtta acctcctcaa 4621 aggagaggat actcagcagg cccagataac aactgactca acaggtaaga tacaactaac 4681 catgccagac acctctcgca tggcccgtgc agcaaccaca accgctagtg aaatcatatg 4741 gttagtcact gatacaataa taactgctgg tgccagcgca ttcccgcccc ctttcaattg 4801 gcttttcagg ggcggctggt ggctagtcaa acgggccgca ggtgctcccg tgcgggaagg 4861 gggagtcacc tttgatgtct actcctcaat atcggatgcg agggcaggtg taccttgcat 4921 ttccaccaat gtaggctctg gtccaatcac aattggtggg cttcacttcc agcaagtcac 4981 gcccggcaat accgggatat ctgatgaaat ccccaggtta gagcgctcaa ttgtccaacc 5041 tgtcaatcaa aacacccata ttatcacgta cactgggatg tacaacactg atgagatacc 5101 aggtgatatt gtctggtacg agcgggttgg tactgatcct aggtcccagc gcggccttgc 5161 attgcctgtt ggagagggtg tgataactac ctataactat ggcaaggtga ctataaccaa 5221 tcgggacgtg ccaacgcgag gtatccctgt ctatatgata cacggggaga acttcacccg 5281 agtccaagtt ggtcttgctg ttgctggtaa tcatgcaacc agggaacttg ccagcaccca 5341 tcagatcacg cttgccacca tcctgtttta ctgtaataac ttccagggct atacctacaa 5401 tgggacgaat gactcaacct tcaggtatac aagaccatca tacacccagg cacaggcatc 5461 cattgccctg aatagtggaa cagtgaccca gaggcgcatt aaagtggacc ctggcaattg 5521 gtacgtactc cagttctttt gctatggtgc agcctatgaa acatacacaa taaataatgg 5581 tgacaatttc accatcaaaa tacctaggga taattggccc acatctacaa ccataaatta 5641 ctccccactt attagtgatg tcaccaaagg gctagcgcct ggctacagca catccatggt 5701 gatgaagaat ttcaatgaat tcaccatagt aaggaactca agatcagtgg agcaccaaga 5761 caccactgcc caggacactt tttatgacct gcccccgctt gaggatgatg atgatgcaga 5821 cgacgaagat gaagatctaa ctgatgagca acttgagatg ggccctcttg atgactatga 5881 tacaccacca atgtcccggt tggtggttca tccagatgct cgcaagacct atgagctcct 5941 gcttgagctc tattcagaac gggaagcccg cttggcagtg aatcagctga aaccaagcga 6001 tgagtacaag gaattcgttg ccttgtacca cgatgcatta gttgatggcc tatcacctag 6061 atcagcgagg gctcacgctc ttgggatcta ggatggcgca tgcatcgtgc cttttaattt 6121 aatcagtttt tcagtttcat ttgtgattta attagcatag gtgaagggga aaaaaaaaaa 6181 aaaaaaaaaa aaaaa // LOCUS OvAstV-S6.1 6130 bp RNA linear 14-JAN-2019 DEFINITION OvAstV-S6.1, partial sequence. ACCESSION OvAstV-S6.1 VERSION KEYWORDS . SOURCE Ovine Astrovirus S6.1 ORGANISM Ovine Astrovirus S6.1 Unclassified. REFERENCE 1 (bases 1 to 6130) AUTHORS Kauer,R.V., Koch,M.C., Boujon,C.L., Werder,S. and Seuberlich,T. TITLE Discovery of novel astrovirus genotype species in small ruminants JOURNAL unpublished REFERENCE 2 (bases 1 to 6130) AUTHORS Kauer,R.V., Koch,M.C., Boujon,C.L., Werder,S. and Seuberlich,T. TITLE Direct Submission JOURNAL Submitted (14-JAN-2019) DCR-VPH, University of Bern, Bremgartenstrasse, Bern, 3012, Switzerland COMMENT Bankit Comment: TOTAL # OF SEQS:5 ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.11.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6130 /organism="Ovine Astrovirus S6.1" /mol_type="genomic RNA" /strain="OvAstV-S6.1" /host="Ovis aries" /tissue_type="brain" /country="Switzerland" /collection_date="2017" gene 37..3794 /gene="ORF1ab" CDS join(37..2286,2286..3794) /gene="ORF1ab" /ribosomal_slippage /codon_start=1 /product="nonstructural protein nsp1ab" /translation="MYFFPTLRSDRVLTASTVCEEEWRTFMLTTQGCEHIAVEVNHIP DHQPTILTAALMNDRAARKRELSDLRLENQILRAELAQHRNEERSTTKFVLSWPTIFA LVFLGFSMFWHSAHGLTTTSTTDSVDPIGILRLNAWLDKFVENAMKTVHTHHTTLVGA IQASPTWVLVNMVMPHMWTVVVMCLGLISVYKSEHKVISILFLCASTLSGGDWVMLAT SSYQTIPSAIVQIACVMISHIDALGAMCLSMVVMFTTFIASMCLSNVSFIQHSRAAAI NTASLVVSIVLRTLRLPAMPLAVAMALVRAYTILTTTSGSTIEVRSEDGKVVSKEPAR PGLLFRFKQACRRFAQVRSSMAPLVRVNPAAVVRIETPDGIGTGFACANYIVTAGHVM GSHKVVSICVGKAKYQSSLIRHVDGKDVALLKMPQQLQGIPRLKIAGKVDTEWVCVYS PDEEGAIVQSVVPGHQVDECINYAVPTRDGMSGAPIVNPDGRVMAVHLTNTGYTGGAV ILTLQDVTDPPKSNPNEDKLKAEIEELKKQLAACNQSSTSEQDIINLVRVAIGREMSI LRSELNKELGFSQAKGKIKGKNRQKMMGARKRKQRGPVFTEEEYQKLIDEGLTSDQIR DMVDDLYIKEAAGYPEWEPLDDGYDPEDDWVFESDYDFGQKKTVVPSFKQYLARDYDA SEVEEMLRSLTPSDIEALGPVYHVLVKNTSSPLCASLICIADRYAAANGLAPPSFGMR YTQRRVPSKNRAAGPSPAGPEIHKLDGWYALRQPPERFVVPDDYPVVCNLPINRPIFD DKVPDDPLLGLLPPCDPDLAFAPAVWGPEAYTKSFEKFSYAQPSKFWELYPEECKFAD HQWRKHYNFLEDTRVKHITATEKNIDSTPGYPKCEVHDSERDYMDCYGWGPYIKEFKR IDKGAKPKVLWYCFLKKEQLKKEKIKDADIRQIICPDVIYSRIGAALEQHQNDLMKKH TNDSSGQCGWTPFYGGFEAKMRRLNRGNIIEFDWTRFDGTIPRELLKHIKNLRWEKVN KAHRERYRHVHEWYVENLLTRYVLMPTGEVTIQRRGNPSGQISTTMDNNMVNYWLQAF EFAYINKGKDIYALWGDYDTIVYGDDRLTSTPVLPDDYIPKVVAMYKDVFGMWVKPEK VKIHPTIVGASFCGFTVGPNYQPVPTNPEKLWASLVTPCQKLPDDNALYGKLLSFKIL MHNSGDHPFKEYVEKCLAALEEHRSLPRLTDEQLDRLWRGGPKTNPNG*" gene 37..2331 /gene="ORF1a" CDS 37..2331 /gene="ORF1a" /codon_start=1 /product="nonstructural protein nsp1a" /translation="MYFFPTLRSDRVLTASTVCEEEWRTFMLTTQGCEHIAVEVNHIP DHQPTILTAALMNDRAARKRELSDLRLENQILRAELAQHRNEERSTTKFVLSWPTIFA LVFLGFSMFWHSAHGLTTTSTTDSVDPIGILRLNAWLDKFVENAMKTVHTHHTTLVGA IQASPTWVLVNMVMPHMWTVVVMCLGLISVYKSEHKVISILFLCASTLSGGDWVMLAT SSYQTIPSAIVQIACVMISHIDALGAMCLSMVVMFTTFIASMCLSNVSFIQHSRAAAI NTASLVVSIVLRTLRLPAMPLAVAMALVRAYTILTTTSGSTIEVRSEDGKVVSKEPAR PGLLFRFKQACRRFAQVRSSMAPLVRVNPAAVVRIETPDGIGTGFACANYIVTAGHVM GSHKVVSICVGKAKYQSSLIRHVDGKDVALLKMPQQLQGIPRLKIAGKVDTEWVCVYS PDEEGAIVQSVVPGHQVDECINYAVPTRDGMSGAPIVNPDGRVMAVHLTNTGYTGGAV ILTLQDVTDPPKSNPNEDKLKAEIEELKKQLAACNQSSTSEQDIINLVRVAIGREMSI LRSELNKELGFSQAKGKIKGKNRQKMMGARKRKQRGPVFTEEEYQKLIDEGLTSDQIR DMVDDLYIKEAAGYPEWEPLDDGYDPEDDWVFESDYDFGQKKTVVPSFKQYLARDYDA SEVEEMLRSLTPSDIEALGPVYHVLVKNTSSPLCASLICIADRYAAANGLAPPSFGMR YTQRRVPSKNGQRGPRQRAQKSTN*" gene 3787..6036 /gene="ORF2" CDS 3787..6036 /gene="ORF2" /codon_start=1 /product="capsid protein precursor" /translation="MASNSTRRTARNTTNIVVRNGPAAPQGAVAPNRGQGRRKGVQRR ARRQQRAQVMVRVQPSQTSRRGRIPRRPRFNNRVVFQKITTTLGTVGSNGSEQIECEL TCLMNPATMKEATGSNSFGPLGIYASTYSLFRMTKCVVKLKPLVGDSAVSGTITRVSW NPTSAPTQTSWSALGARKHIDVTPGKIGIFTLTARDLVGPKGGWYKTNTKGDPMMSFA GTLECHTLGRTMSTYRNEAFTGGLFLAELETEWQFKDYAQQPGMVNLLKGEDATQAQI VTSSDGKIQLQLPANSRMARAATTTASEIIWLVTDTIITAGASAFPPPFNWLFRGGWW LVKRAAGAPVRAGEVTFDVYSSISDARAGVPCISTTPSSPPVTIGGLHFQQVTPGNVG IGDDIVRESRSIDIQPVSSPPRVLAYSGMYDTTFIPGYHVLYEKNNVPRSERGLAVPV QEGFITTYNYGKVEVDARLPPTRGIPVYLATSNTNRTQIGLAVSSTSTTLENGGTPIT LSTMLFYCTESRNYDFTQSNDGLFRVADLSYSQAQAQIILRTRTVNKRKVLVASGSWY VLQFFCYGAAHETYRVDTPTVTEIRTPQNAWPMNETTITYTPDSSNAEAGLTPGYSTS ILLGDIQTYTVTRYARAMADEEYHDLPPLEDEDDADDEDEDLTDEQLEMGPFDDYDTP PMSRLVVHPDARKTYDLLLELYSEREARLAVNQLKPSDEYKEFVALYHDALVDGLSPR SARAHALGI*" BASE COUNT 1627 a 1518 c 1520 g 1465 t ORIGIN 1 ccaacagcac cgtggtatgt ttcatatcaa ccgcggatgt atttcttccc aactctcaga 61 tcggaccgtg tcctgacagc tagtacggtc tgtgaggaag agtggcgtac ctttatgctc 121 accacacagg gttgtgagca cattgcggtc gaggtcaacc acatacccga tcaccagccc 181 accatcctca cagcagcatt gatgaatgat cgtgctgccc ggaagagaga actatctgac 241 ttgcgccttg aaaaccaaat tttgagagca gaattggccc aacaccgtaa tgaagagagg 301 agcaccacta aatttgttct gagttggcca acaatctttg ctttggtttt ccttggcttc 361 tccatgtttt ggcattccgc acacgggctt accaccacgt caacaaccga ttctgtggac 421 cccattggaa tactcagatt gaacgcatgg ctggacaagt ttgtggagaa tgcaatgaaa 481 acagtccaca cccatcatac aactctagtt ggtgccatac aggcatcacc cacctgggtg 541 cttgtgaata tggtgatgcc ccatatgtgg actgttgttg tgatgtgtct cggtctgata 601 tctgtttata aatccgagca caaggtcatt tccatattgt tcctctgtgc atccacattg 661 agtggtggtg actgggtcat gcttgcaaca tcatcatatc agacgatacc tagcgccatt 721 gttcaaattg cgtgcgtcat gatatcacat atcgacgcgc taggagcaat gtgtttatct 781 atggttgtta tgtttacaac attcatagct agtatgtgtc tatctaatgt gagcttcatc 841 caacactccc gtgcggcagc tataaacaca gcatccctcg ttgtttcaat cgtgttgcgg 901 actttgaggc tcccagctat gccccttgca gtcgccatgg cacttgtcag ggcttacact 961 atcttgacaa cgacaagcgg ctcgaccatt gaggtgagat ctgaggatgg caaggttgtc 1021 tccaaggagc cagcgaggcc ggggttgctg ttcaggttta aacaggcctg tcggcggttt 1081 gcgcaggtca gatccagcat ggcccccctt gtgcgtgtca accccgctgc cgtggttaga 1141 atagagacac cagatggcat tggcactggc tttgcgtgtg caaactatat tgtcacagct 1201 gggcacgtca tggggtcaca caaggttgtg tccatatgtg taggtaaggc gaaatatcaa 1261 tcaagtctca tccgccatgt ggatggaaaa gatgttgccc ttctcaagat gccgcaacag 1321 ctccagggta taccgcgcct taaaatagca ggtaaggttg acacagagtg ggtttgtgtg 1381 tattcacctg atgaagaagg cgcgattgtg cagtcagttg tgcctggaca tcaggttgat 1441 gagtgcatca actatgcagt acccactcgt gatggcatgt ctggtgctcc gatcgtcaat 1501 cctgatggtc gtgttatggc agtacatctc actaacactg gctatactgg aggtgctgtc 1561 atcctaaccc tccaggatgt gactgaccca cccaagtcaa accccaatga ggataaactc 1621 aaagccgaga ttgaggagct aaagaagcaa cttgcagcct gcaaccaatc cagcacttct 1681 gagcaagaca tcatcaacct tgtccgtgtt gccattggac gtgagatgtc gatcctgcgc 1741 tctgagctca acaaggagct cggcttctca caggccaaag ggaagataaa ggggaagaac 1801 agacagaaaa tgatgggagc caggaaacgc aagcagcgtg gcccagtctt tactgaggag 1861 gagtatcaga agctcatcga tgagggtctc acatcggatc aaattcgtga catggttgac 1921 gacctctaca taaaggaagc agccggttac cctgagtggg aaccccttga tgatggctat 1981 gatccagagg atgattgggt ctttgagtcc gattatgact ttggccaaaa gaagactgtt 2041 gttccatcct tcaagcagta tctggctaga gactatgatg ccagtgaagt ggaggaaatg 2101 ctgcgttccc tcactccatc ggacatcgaa gcccttggtc ctgtctacca cgtgctcgtc 2161 aaaaacacct cgagccctct ctgtgcctcc ctgatttgca ttgcagatag gtacgcagct 2221 gccaacggtc tggctccacc gtcatttggg atgcgctaca cccaacgtcg tgtcccatca 2281 aaaaacgggc agcggggccc tcgccagcgg gcccagaaat ccacaaacta gacggctggt 2341 atgcgctccg ccaaccaccg gagcgatttg tcgtccctga cgactaccca gtggtttgta 2401 atctgcccat aaatagaccc atttttgatg acaaagtccc tgatgaccca ctccttggtc 2461 tgctcccacc ttgtgaccca gatttggcct ttgcccccgc tgtatggggc cccgaagctt 2521 acacaaagtc atttgagaaa tttagttacg ctcaaccatc aaagttttgg gaattatatc 2581 ctgaagagtg caagtttgct gaccaccaat ggcgcaaaca ctataacttc ctcgaagaca 2641 cccgagtgaa gcacataaca gccactgaga aaaacattga ctctacacca gggtatccaa 2701 aatgtgaagt tcatgatagt gagcgtgact acatggattg ttatggctgg gggccttaca 2761 tcaaagaatt caaaaggata gacaaagggg caaaacccaa agttctgtgg tattgtttct 2821 tgaagaagga acagcttaag aaagagaaaa tcaaagacgc tgacattcgc caaataatat 2881 gccctgatgt gatatactca cgcattggcg ctgctttaga acaacatcaa aacgacctga 2941 tgaagaaaca cactaatgac agtagcggcc agtgtggttg gacacccttc tacgggggtt 3001 ttgaggcaaa gatgcgtcgt ttgaaccgcg gcaatatcat tgagtttgac tggacgcggt 3061 ttgatggaac gataccacgt gagctcctga aacacatcaa aaacctgcgt tgggagaagg 3121 tcaataaagc ccaccgtgag cgctacaggc acgtccatga gtggtacgtt gaaaatctcc 3181 tgaccaggta cgtgcttatg cccactggtg aggtgaccat tcaacgcagg ggcaacccat 3241 caggtcaaat ttctacaacc atggacaaca atatggtgaa ttactggctt caagcctttg 3301 aatttgccta catcaataag ggcaaggaca tctatgccct ttggggtgat tacgacacaa 3361 tagtctatgg tgatgacagg ttgacatcaa cgcctgtcct gcctgatgac tacatcccta 3421 aggttgttgc catgtacaaa gatgtgtttg ggatgtgggt taagccagag aaagttaaaa 3481 tccatcccac cattgttgga gcatcctttt gtggattcac agtgggtcca aactaccaac 3541 ccgttccaac aaacccagag aagttgtggg ctagcctcgt gacaccctgc caaaaattac 3601 cagatgataa tgccctctat gggaaactcc ttagttttaa gatcctaatg cataattcag 3661 gggaccatcc tttcaaggag tatgtggaga agtgtctcgc tgcattggaa gaacatcgct 3721 ccttgccacg cctcacagat gagcagctgg atcgtctttg gaggggagga ccaaagacaa 3781 acccaaatgg ctagcaacag cacacgccgc acagcgcgca acacgactaa tatcgtggtg 3841 cgcaatgggc cagcagctcc ccaaggagca gtcgccccta acagaggtca aggtaggagg 3901 aaaggagtgc agcgacgagc cagacgccag caacgagcac aagtcatggt gcgggtgcag 3961 cccagtcaaa cttcgcgtcg cgggaggatt cctaggcgcc cgaggttcaa taaccgtgtg 4021 gttttccaga agatcacgac aactctcgga acagtgggat caaatgggag tgaacaaata 4081 gaatgtgagt tgacttgcct catgaaccca gcaacaatga aggaggctac gggtagtaat 4141 agctttggcc cattaggcat ctatgcctcc acttattcat tgttccggat gacaaaatgt 4201 gtcgtcaaac tcaaaccact cgtaggggac agtgcagtct cggggacaat aacccgtgtc 4261 tcttggaacc ccacatcagc tcctacacaa acatcgtgga gtgcacttgg ggctcggaaa 4321 catatcgatg taacaccagg aaagattgga atcttcacgc tgaccgcgcg tgacttggta 4381 ggccccaagg gtggttggta caagacgaac accaagggag acccaatgat gtccttcgct 4441 ggaacactgg aatgccacac acttgggcgt acaatgtcaa cctaccgcaa tgaggctttt 4501 actggtggat tgttcctggc cgagttggaa acagagtggc agttcaagga ttatgcccag 4561 cagcctggga tggtgaattt gcttaagggt gaggatgcta cacaggctca aattgtgacc 4621 tcttctgacg ggaagattca actccagctt cctgccaact ctagaatggc ccgcgctgcc 4681 accacgacag ctagtgagat aatatggctt gtcacagata ctatcattac tgctggtgcc 4741 agtgccttcc cgccaccctt caattggcta ttcaggggtg gctggtggct tgtgaaacgg 4801 gcagctggtg cgcccgtccg agcaggagag gttacattcg atgtctactc atctatttca 4861 gacgcccgtg cgggcgtccc ctgcatctca actacaccta gctcaccacc tgtaaccata 4921 ggtggtcttc attttcagca ggtcacacca gggaacgtgg gtattggaga tgacatcgtg 4981 agggagtcgc gatccatcga catccaacca gttagttcac caccgagagt tcttgcctac 5041 tctggcatgt atgacaccac cttcataccc ggctatcatg ttctttatga gaagaataat 5101 gtacctcgct cagagcgagg cctggcagtc ccagtccaag aggggtttat tacaacctac 5161 aactatggca aagttgaagt ggacgccagg ctacctccaa ctagaggcat accagtttat 5221 ctggcaacaa gcaatacaaa tagaacgcag attgggctcg ccgtctccag cacctcaact 5281 acattggaaa atggtggaac cccaatcacc ttgtcaacca tgctgttcta ttgcactgag 5341 tcgaggaatt atgattttac ccagagcaat gatgggcttt ttagggttgc agatctttca 5401 tatagccagg cacaggccca gatcatccta aggacacgca cagttaacaa aaggaaagtc 5461 cttgtggcat ctggaagctg gtacgttctc cagttcttct gctatggagc tgcgcatgag 5521 acatatcgtg ttgacactcc cacggtcact gaaatcagga cccctcaaaa tgcctggcct 5581 atgaatgaaa ccaccataac ctatacgcct gatagcagta atgctgaggc cggtcttaca 5641 cccggctaca gcacatccat actgttaggt gacatccaaa catacactgt gactagatac 5701 gctcgcgcca tggctgatga agagtatcat gacctgccac cactggagga tgaggatgat 5761 gctgatgatg aggatgagga tttgactgat gaacagcttg aaatgggtcc ttttgatgat 5821 tatgatacgc caccaatgtc ccggttggtg gttcatccag atgctcgcaa aacctatgac 5881 cttttgctcg agctttattc agaacgggaa gcccgcttgg cagtaaatca gctgaaacca 5941 agcgatgagt ataaggaatt tgttgccttg taccacgatg cgttagttga tggcctatca 6001 cctaggtctg caagagccca tgccttgggg atctaggatg gcgcacgcgt cgtgcatttt 6061 aatttaatca gtttttcagt ttcatttgtg atttaattag cataggtgaa ggggaaaaaa 6121 aaaaaagaaa //