Pathway ID	Pathway Name	Level 1	Level 2	Term Candidate Gene Num	Total Candidate Gene Num	Term Gene Num	Total Gene Num	Rich Ratio	P value	Q value
ko03010	Ribosome	Genetic Information Processing	Translation	434	4583	2379	44739	0.182429592	4.59E-34	6.11E-32
ko00040	Pentose and glucuronate interconversions	Metabolism	Carbohydrate metabolism	257	4583	1284	44739	0.200155763	3.10E-26	2.06E-24
ko00901	Indole alkaloid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	72	4583	267	44739	0.269662921	9.68E-15	4.29E-13
ko00940	Phenylpropanoid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	256	4583	1575	44739	0.162539683	4.94E-14	1.64E-12
ko00902	Monoterpenoid biosynthesis	Metabolism	Metabolism of terpenoids and polyketides	31	4583	92	44739	0.336956522	1.04E-09	2.30E-08
ko00190	Oxidative phosphorylation	Metabolism	Energy metabolism	166	4583	1020	44739	0.162745098	1.32E-09	2.49E-08
ko03020	RNA polymerase	Genetic Information Processing	Transcription	141	4583	831	44739	0.16967509	1.50E-09	2.49E-08
ko00073	"Cutin, suberine and wax biosynthesis"	Metabolism	Lipid metabolism	59	4583	255	44739	0.231372549	1.73E-09	2.56E-08
ko00460	Cyanoamino acid metabolism	Metabolism	Metabolism of other amino acids	123	4583	707	44739	0.17397454	3.64E-09	4.84E-08
ko00500	Starch and sucrose metabolism	Metabolism	Carbohydrate metabolism	258	4583	1843	44739	0.139989148	1.24E-07	1.50E-06
ko00052	Galactose metabolism	Metabolism	Carbohydrate metabolism	163	4583	1091	44739	0.149404216	5.91E-07	6.04E-06
ko00053	Ascorbate and aldarate metabolism	Metabolism	Carbohydrate metabolism	131	4583	844	44739	0.15521327	1.00E-06	9.51E-06
ko00908	Zeatin biosynthesis	Metabolism	Metabolism of terpenoids and polyketides	34	4583	140	44739	0.242857143	1.38E-06	1.22E-05
ko00520	Amino sugar and nucleotide sugar metabolism	Metabolism	Carbohydrate metabolism	204	4583	1494	44739	0.136546185	1.29E-05	0.000106985
ko00960	"Tropane, piperidine and pyridine alkaloid biosynthesis"	Metabolism	Biosynthesis of other secondary metabolites	51	4583	286	44739	0.178321678	6.40E-05	0.000500848
ko00230	Purine metabolism	Metabolism	Nucleotide metabolism	239	4583	1869	44739	0.127875869	0.000185559	0.001371077
ko00904	Diterpenoid biosynthesis	Metabolism	Metabolism of terpenoids and polyketides	38	4583	215	44739	0.176744186	0.000607955	0.004255682
ko00561	Glycerolipid metabolism	Metabolism	Lipid metabolism	118	4583	861	44739	0.137049942	0.000690668	0.004592944
ko00950	Isoquinoline alkaloid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	43	4583	256	44739	0.16796875	0.000832749	0.005274075
ko00240	Pyrimidine metabolism	Metabolism	Nucleotide metabolism	197	4583	1561	44739	0.126201153	0.001235218	0.007467454
ko00360	Phenylalanine metabolism	Metabolism	Amino acid metabolism	71	4583	485	44739	0.146391753	0.001398712	0.008088204
ko00061	Fatty acid biosynthesis	Metabolism	Lipid metabolism	51	4583	336	44739	0.151785714	0.002897671	0.01541561
ko00760	Nicotinate and nicotinamide metabolism	Metabolism	Metabolism of cofactors and vitamins	51	4583	336	44739	0.151785714	0.002897671	0.01541561
ko00565	Ether lipid metabolism	Metabolism	Lipid metabolism	46	4583	303	44739	0.151815182	0.004467864	0.02285484
ko00350	Tyrosine metabolism	Metabolism	Amino acid metabolism	59	4583	420	44739	0.14047619	0.008033629	0.03957306
ko00906	Carotenoid biosynthesis	Metabolism	Metabolism of terpenoids and polyketides	58	4583	420	44739	0.138095238	0.01193344	0.05668384
ko00620	Pyruvate metabolism	Metabolism	Carbohydrate metabolism	108	4583	877	44739	0.123147092	0.02570764	0.1179006
ko00380	Tryptophan metabolism	Metabolism	Amino acid metabolism	56	4583	432	44739	0.12962963	0.03982371	0.1765518
ko00020	Citrate cycle (TCA cycle)	Metabolism	Carbohydrate metabolism	74	4583	593	44739	0.124789207	0.04392406	0.1884484
ko00905	Brassinosteroid biosynthesis	Metabolism	Metabolism of terpenoids and polyketides	14	4583	84	44739	0.166666667	0.04585318	0.1905773
ko00062	Fatty acid elongation	Metabolism	Lipid metabolism	30	4583	215	44739	0.139534884	0.05053724	0.2036804
ko00604	Glycosphingolipid biosynthesis - ganglio series	Metabolism	Glycan biosynthesis and metabolism	36	4583	279	44739	0.129032258	0.08833015	0.3356546
ko00941	Flavonoid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	52	4583	420	44739	0.123809524	0.08783717	0.3356546
ko00515	Mannose type O-glycan biosynthesis	Metabolism	Glycan biosynthesis and metabolism	3	4583	12	44739	0.25	0.1171552	0.4328234
ko00410	beta-Alanine metabolism	Metabolism	Metabolism of other amino acids	44	4583	368	44739	0.119565217	0.1580852	0.5577873
ko00590	Arachidonic acid metabolism	Metabolism	Lipid metabolism	37	4583	305	44739	0.121311475	0.1593678	0.5577873
ko00943	Isoflavonoid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	12	4583	87	44739	0.137931034	0.1773385	0.6047698
ko00030	Pentose phosphate pathway	Metabolism	Carbohydrate metabolism	63	4583	556	44739	0.113309353	0.2154931	0.7165146
ko03030	DNA replication	Genetic Information Processing	Replication and repair	77	4583	691	44739	0.111432706	0.2325787	0.7390012
ko03440	Homologous recombination	Genetic Information Processing	Replication and repair	89	4583	804	44739	0.110696517	0.2333688	0.7390012
ko00260	"Glycine, serine and threonine metabolism"	Metabolism	Amino acid metabolism	62	4583	553	44739	0.112115732	0.2437403	0.7538944
ko00965	Betalain biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	13	4583	104	44739	0.125	0.2659128	0.8037819
ko00010	Glycolysis / Gluconeogenesis	Metabolism	Carbohydrate metabolism	139	4583	1290	44739	0.107751938	0.2743939	0.8096584
ko00072	Synthesis and degradation of ketone bodies	Metabolism	Lipid metabolism	8	4583	61	44739	0.131147541	0.2847333	0.8096584
ko00785	Lipoic acid metabolism	Metabolism	Metabolism of cofactors and vitamins	5	4583	35	44739	0.142857143	0.2861199	0.8096584
ko00531	Glycosaminoglycan degradation	Metabolism	Glycan biosynthesis and metabolism	39	4583	347	44739	0.112391931	0.2940208	0.8146826
ko00640	Propanoate metabolism	Metabolism	Carbohydrate metabolism	38	4583	339	44739	0.112094395	0.3028728	0.8220833
ko03430	Mismatch repair	Genetic Information Processing	Replication and repair	65	4583	598	44739	0.108695652	0.3248545	0.864113
ko00270	Cysteine and methionine metabolism	Metabolism	Amino acid metabolism	93	4583	876	44739	0.106164384	0.3730057	0.9727404
ko04626	Plant-pathogen interaction	Organismal Systems	Environmental adaptation	222	4583	2126	44739	0.104421449	0.3895793	0.996424
ko00051	Fructose and mannose metabolism	Metabolism	Carbohydrate metabolism	62	4583	637	44739	0.09733124	0.6847479	0.9999994
ko00071	Fatty acid degradation	Metabolism	Lipid metabolism	45	4583	661	44739	0.068078669	0.9992081	0.9999994
ko00100	Steroid biosynthesis	Metabolism	Lipid metabolism	21	4583	238	44739	0.088235294	0.7948389	0.9999994
ko00130	Ubiquinone and other terpenoid-quinone biosynthesis	Metabolism	Metabolism of cofactors and vitamins	34	4583	401	44739	0.08478803	0.8975897	0.9999994
ko00195	Photosynthesis	Metabolism	Energy metabolism	19	4583	299	44739	0.063545151	0.9930161	0.9999994
ko00196	Photosynthesis - antenna proteins	Metabolism	Energy metabolism	8	4583	80	44739	0.1	0.582916	0.9999994
ko00220	Arginine biosynthesis	Metabolism	Amino acid metabolism	14	4583	310	44739	0.04516129	0.999928	0.9999994
ko00250	"Alanine, aspartate and glutamate metabolism"	Metabolism	Amino acid metabolism	34	4583	493	44739	0.068965517	0.9961587	0.9999994
ko00261	Monobactam biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	3	4583	84	44739	0.035714286	0.9936439	0.9999994
ko00280	"Valine, leucine and isoleucine degradation"	Metabolism	Amino acid metabolism	60	4583	600	44739	0.1	0.5985958	0.9999994
ko00290	"Valine, leucine and isoleucine biosynthesis"	Metabolism	Amino acid metabolism	18	4583	197	44739	0.091370558	0.7297917	0.9999994
ko00300	Lysine biosynthesis	Metabolism	Amino acid metabolism	6	4583	95	44739	0.063157895	0.9328391	0.9999994
ko00310	Lysine degradation	Metabolism	Amino acid metabolism	42	4583	455	44739	0.092307692	0.7842563	0.9999994
ko00330	Arginine and proline metabolism	Metabolism	Amino acid metabolism	52	4583	503	44739	0.103379722	0.4939077	0.9999994
ko00340	Histidine metabolism	Metabolism	Amino acid metabolism	17	4583	216	44739	0.078703704	0.9010349	0.9999994
ko00400	"Phenylalanine, tyrosine and tryptophan biosynthesis"	Metabolism	Amino acid metabolism	30	4583	385	44739	0.077922078	0.9576528	0.9999994
ko00402	Benzoxazinoid biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	4	4583	63	44739	0.063492063	0.8978446	0.9999994
ko00430	Taurine and hypotaurine metabolism	Metabolism	Metabolism of other amino acids	1	4583	67	44739	0.014925373	0.9992874	0.9999994
ko00440	Phosphonate and phosphinate metabolism	Metabolism	Metabolism of other amino acids	2	4583	56	44739	0.035714286	0.9826572	0.9999994
ko00450	Selenocompound metabolism	Metabolism	Metabolism of other amino acids	20	4583	255	44739	0.078431373	0.9192554	0.9999994
ko00480	Glutathione metabolism	Metabolism	Metabolism of other amino acids	53	4583	694	44739	0.076368876	0.9924412	0.9999994
ko00510	N-Glycan biosynthesis	Metabolism	Glycan biosynthesis and metabolism	27	4583	407	44739	0.066339066	0.9957438	0.9999994
ko00511	Other glycan degradation	Metabolism	Glycan biosynthesis and metabolism	64	4583	625	44739	0.1024	0.5209475	0.9999994
ko00514	Other types of O-glycan biosynthesis	Metabolism	Glycan biosynthesis and metabolism	18	4583	187	44739	0.096256684	0.6453854	0.9999994
ko00562	Inositol phosphate metabolism	Metabolism	Carbohydrate metabolism	50	4583	753	44739	0.066401062	0.9998007	0.9999994
ko00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	Metabolism	Glycan biosynthesis and metabolism	26	4583	247	44739	0.105263158	0.4724085	0.9999994
ko00564	Glycerophospholipid metabolism	Metabolism	Lipid metabolism	74	4583	898	44739	0.082405345	0.9824144	0.9999994
ko00591	Linoleic acid metabolism	Metabolism	Lipid metabolism	26	4583	394	44739	0.065989848	0.9955623	0.9999994
ko00592	alpha-Linolenic acid metabolism	Metabolism	Lipid metabolism	38	4583	602	44739	0.063122924	0.9997483	0.9999994
ko00600	Sphingolipid metabolism	Metabolism	Lipid metabolism	72	4583	732	44739	0.098360656	0.661049	0.9999994
ko00601	Glycosphingolipid biosynthesis - lacto and neolacto series	Metabolism	Glycan biosynthesis and metabolism	1	4583	15	44739	0.066666667	0.802373	0.9999994
ko00603	Glycosphingolipid biosynthesis - globo and isoglobo series	Metabolism	Glycan biosynthesis and metabolism	4	4583	61	44739	0.06557377	0.8832506	0.9999994
ko00630	Glyoxylate and dicarboxylate metabolism	Metabolism	Carbohydrate metabolism	77	4583	810	44739	0.095061728	0.7736304	0.9999994
ko00650	Butanoate metabolism	Metabolism	Carbohydrate metabolism	23	4583	233	44739	0.098712446	0.6064209	0.9999994
ko00660	C5-Branched dibasic acid metabolism	Metabolism	Carbohydrate metabolism	7	4583	102	44739	0.068627451	0.9081667	0.9999994
ko00670	One carbon pool by folate	Metabolism	Metabolism of cofactors and vitamins	21	4583	216	44739	0.097222222	0.632999	0.9999994
ko00710	Carbon fixation in photosynthetic organisms	Metabolism	Energy metabolism	80	4583	783	44739	0.102171137	0.5275846	0.9999994
ko00730	Thiamine metabolism	Metabolism	Metabolism of cofactors and vitamins	12	4583	145	44739	0.082758621	0.8200298	0.9999994
ko00740	Riboflavin metabolism	Metabolism	Metabolism of cofactors and vitamins	11	4583	216	44739	0.050925926	0.9978106	0.9999994
ko00750	Vitamin B6 metabolism	Metabolism	Metabolism of cofactors and vitamins	4	4583	101	44739	0.03960396	0.9941137	0.9999994
ko00770	Pantothenate and CoA biosynthesis	Metabolism	Metabolism of cofactors and vitamins	23	4583	279	44739	0.082437276	0.8884681	0.9999994
ko00780	Biotin metabolism	Metabolism	Metabolism of cofactors and vitamins	14	4583	134	44739	0.104477612	0.5106843	0.9999994
ko00790	Folate biosynthesis	Metabolism	Metabolism of cofactors and vitamins	13	4583	206	44739	0.063106796	0.9818481	0.9999994
ko00860	Porphyrin and chlorophyll metabolism	Metabolism	Metabolism of cofactors and vitamins	27	4583	401	44739	0.067331671	0.9944177	0.9999994
ko00900	Terpenoid backbone biosynthesis	Metabolism	Metabolism of terpenoids and polyketides	29	4583	309	44739	0.093851133	0.7181955	0.9999994
ko00909	Sesquiterpenoid and triterpenoid biosynthesis	Metabolism	Metabolism of terpenoids and polyketides	21	4583	195	44739	0.107692308	0.4384997	0.9999994
ko00910	Nitrogen metabolism	Metabolism	Energy metabolism	21	4583	284	44739	0.073943662	0.9593768	0.9999994
ko00920	Sulfur metabolism	Metabolism	Energy metabolism	12	4583	208	44739	0.057692308	0.9919608	0.9999994
ko00942	Anthocyanin biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	4	4583	37	44739	0.108108108	0.5333563	0.9999994
ko00944	Flavone and flavonol biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	7	4583	81	44739	0.086419753	0.7358702	0.9999994
ko00945	"Stilbenoid, diarylheptanoid and gingerol biosynthesis"	Metabolism	Biosynthesis of other secondary metabolites	22	4583	228	44739	0.096491228	0.6487372	0.9999994
ko00966	Glucosinolate biosynthesis	Metabolism	Biosynthesis of other secondary metabolites	4	4583	48	44739	0.083333333	0.7382666	0.9999994
ko00970	Aminoacyl-tRNA biosynthesis	Genetic Information Processing	Translation	50	4583	653	44739	0.076569678	0.9903629	0.9999994
ko01040	Biosynthesis of unsaturated fatty acids	Metabolism	Lipid metabolism	32	4583	439	44739	0.072892938	0.9866717	0.9999994
ko01200	Carbon metabolism	Metabolism	Global and overview maps	250	4583	2514	44739	0.099443119	0.7047329	0.9999994
ko01210	2-Oxocarboxylic acid metabolism	Metabolism	Global and overview maps	43	4583	556	44739	0.077338129	0.9821406	0.9999994
ko01212	Fatty acid metabolism	Metabolism	Global and overview maps	76	4583	802	44739	0.094763092	0.7812226	0.9999994
ko01230	Biosynthesis of amino acids	Metabolism	Global and overview maps	188	4583	2168	44739	0.086715867	0.9947846	0.9999994
ko02010	ABC transporters	Environmental Information Processing	Membrane transport	77	4583	862	44739	0.089327146	0.9116915	0.9999994
ko03008	Ribosome biogenesis in eukaryotes	Genetic Information Processing	Translation	90	4583	895	44739	0.100558659	0.5908071	0.9999994
ko03013	RNA transport	Genetic Information Processing	Translation	230	4583	2330	44739	0.098712446	0.7387294	0.9999994
ko03015	mRNA surveillance pathway	Genetic Information Processing	Translation	126	4583	1592	44739	0.079145729	0.9994581	0.9999994
ko03018	RNA degradation	Genetic Information Processing	"Folding, sorting and degradation"	120	4583	1440	44739	0.083333333	0.9943997	0.9999994
ko03022	Basal transcription factors	Genetic Information Processing	Transcription	29	4583	415	44739	0.069879518	0.9914649	0.9999994
ko03040	Spliceosome	Genetic Information Processing	Transcription	203	4583	2250	44739	0.090222222	0.9785014	0.9999994
ko03050	Proteasome	Genetic Information Processing	"Folding, sorting and degradation"	51	4583	487	44739	0.104722793	0.4556752	0.9999994
ko03060	Protein export	Genetic Information Processing	"Folding, sorting and degradation"	32	4583	395	44739	0.081012658	0.9363378	0.9999994
ko03410	Base excision repair	Genetic Information Processing	Replication and repair	32	4583	434	44739	0.073732719	0.9838348	0.9999994
ko03420	Nucleotide excision repair	Genetic Information Processing	Replication and repair	79	4583	802	44739	0.098503741	0.6617438	0.9999994
ko03450	Non-homologous end-joining	Genetic Information Processing	Replication and repair	3	4583	66	44739	0.045454545	0.9709621	0.9999994
ko04016	MAPK signaling pathway - plant	Environmental Information Processing	Signal transduction	182	4583	1899	44739	0.095839916	0.843288	0.9999994
ko04070	Phosphatidylinositol signaling system	Environmental Information Processing	Signal transduction	61	4583	815	44739	0.074846626	0.9973336	0.9999994
ko04075	Plant hormone signal transduction	Environmental Information Processing	Signal transduction	190	4583	2255	44739	0.084257206	0.9987751	0.9999994
ko04120	Ubiquitin mediated proteolysis	Genetic Information Processing	"Folding, sorting and degradation"	76	4583	1198	44739	0.063439065	0.9999994	0.9999994
ko04130	SNARE interactions in vesicular transport	Genetic Information Processing	"Folding, sorting and degradation"	9	4583	227	44739	0.039647577	0.9998629	0.9999994
ko04136	Autophagy - other	Cellular Processes	Transport and catabolism	22	4583	395	44739	0.055696203	0.9996793	0.9999994
ko04141	Protein processing in endoplasmic reticulum	Genetic Information Processing	"Folding, sorting and degradation"	184	4583	2211	44739	0.083220262	0.9992469	0.9999994
ko04144	Endocytosis	Cellular Processes	Transport and catabolism	167	4583	1891	44739	0.088313062	0.983967	0.9999994
ko04145	Phagosome	Cellular Processes	Transport and catabolism	68	4583	698	44739	0.097421203	0.6884036	0.9999994
ko04146	Peroxisome	Cellular Processes	Transport and catabolism	74	4583	948	44739	0.078059072	0.9958854	0.9999994
ko04712	Circadian rhythm - plant	Organismal Systems	Environmental adaptation	36	4583	661	44739	0.054462935	0.9999968	0.9999994