IQ-TREE 1.6.11 built Jun 6 2019 Input file name: /tmp/IQTREE/ZvWSaKvKBz/seqin.fst Type of analysis: ModelFinder + tree reconstruction + ultrafast bootstrap (1000 replicates) Random seed number: 398352 REFERENCES ---------- To cite ModelFinder please use: Subha Kalyaanamoorthy, Bui Quang Minh, Thomas KF Wong, Arndt von Haeseler, and Lars S Jermiin (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods, 14:587–589. https://doi.org/10.1038/nmeth.4285 To cite IQ-TREE please use: Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler, and Bui Quang Minh (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Mol Biol Evol, 32:268-274. https://doi.org/10.1093/molbev/msu300 Since you used ultrafast bootstrap (UFBoot) please also cite: Diep Thi Hoang, Olga Chernomor, Arndt von Haeseler, Bui Quang Minh, and Le Sy Vinh (2017) UFBoot2: Improving the ultrafast bootstrap approximation. Mol Biol Evol, in press. https://doi.org/10.1093/molbev/msx281 SEQUENCE ALIGNMENT ------------------ Input data: 71 sequences with 1367 amino-acid sites Number of constant sites: 485 (= 35.4792% of all sites) Number of invariant (constant or ambiguous constant) sites: 485 (= 35.4792% of all sites) Number of parsimony informative sites: 771 Number of distinct site patterns: 1117 ModelFinder ----------- Best-fit model according to BIC: JTT+G4 List of models sorted by BIC scores: Model LogL AIC w-AIC AICc w-AICc BIC w-BIC JTT+G4 -19436.4603 39152.9205 - 0.0000 39185.1228 - 0.0000 39883.7729 + 0.9446 JTT+I+G4 -19435.9721 39153.9442 - 0.0000 39186.6332 - 0.0000 39890.0169 - 0.0416 JTTDCMut+G4 -19440.7290 39161.4580 - 0.0000 39193.6603 - 0.0000 39892.3103 - 0.0132 JTTDCMut+I+G4 -19440.2636 39162.5272 - 0.0000 39195.2162 - 0.0000 39898.5999 - 0.0006 JTT+R3 -19438.4707 39162.9413 - 0.0000 39196.6159 - 0.0000 39909.4548 - 0.0000 JTTDCMut+R3 -19442.6207 39171.2413 - 0.0000 39204.9159 - 0.0000 39917.7548 - 0.0000 JTT+R4 -19437.2895 39164.5789 - 0.0000 39199.2554 - 0.0000 39921.5331 - 0.0000 JTTDCMut+R4 -19440.6618 39171.3235 - 0.0000 39206.0000 - 0.0000 39928.2777 - 0.0000 JTT+F+G4 -19394.5176 39107.0351 + 0.6469 39149.1892 + 0.7091 39937.0746 - 0.0000 JTT+F+I+G4 -19394.1818 39108.3635 + 0.3329 39151.0833 + 0.2751 39943.6234 - 0.0000 JTT+R2 -19462.9103 39207.8206 - 0.0000 39240.5096 - 0.0000 39943.8934 - 0.0000 JTTDCMut+F+G4 -19398.8677 39115.7354 - 0.0083 39157.8895 - 0.0092 39945.7749 - 0.0000 JTTDCMut+F+I+G4 -19398.5243 39117.0486 - 0.0043 39159.7683 - 0.0036 39952.3084 - 0.0000 JTTDCMut+R2 -19467.1719 39216.3438 - 0.0000 39249.0328 - 0.0000 39952.4165 - 0.0000 JTT+F+R3 -19396.3029 39116.6057 - 0.0054 39160.4695 - 0.0025 39962.3063 - 0.0000 JTTDCMut+F+R3 -19400.5416 39125.0832 - 0.0001 39168.9470 - 0.0000 39970.7838 - 0.0000 JTT+F+R4 -19395.3032 39118.6064 - 0.0020 39163.6314 - 0.0005 39974.7477 - 0.0000 JTTDCMut+F+R4 -19398.6791 39125.3582 - 0.0001 39170.3832 - 0.0000 39981.4995 - 0.0000 VT+G4 -19487.8568 39255.7136 - 0.0000 39287.9159 - 0.0000 39986.5659 - 0.0000 VT+I+G4 -19487.4306 39256.8612 - 0.0000 39289.5502 - 0.0000 39992.9340 - 0.0000 JTT+F+R2 -19420.9641 39161.9282 - 0.0000 39204.6480 - 0.0000 39997.1881 - 0.0000 JTTDCMut+F+R2 -19425.3196 39170.6392 - 0.0000 39213.3590 - 0.0000 40005.8990 - 0.0000 VT+R3 -19488.3665 39262.7330 - 0.0000 39296.4076 - 0.0000 40009.2465 - 0.0000 VT+R4 -19488.0110 39266.0221 - 0.0000 39300.6986 - 0.0000 40022.9763 - 0.0000 VT+R2 -19508.1538 39298.3076 - 0.0000 39330.9966 - 0.0000 40034.3803 - 0.0000 WAG+G4 -19513.6483 39307.2966 - 0.0000 39339.4989 - 0.0000 40038.1489 - 0.0000 WAG+I+G4 -19513.0729 39308.1458 - 0.0000 39340.8348 - 0.0000 40044.2185 - 0.0000 WAG+R3 -19514.0748 39314.1495 - 0.0000 39347.8241 - 0.0000 40060.6630 - 0.0000 VT+F+G4 -19461.0909 39240.1818 - 0.0000 39282.3359 - 0.0000 40070.2213 - 0.0000 WAG+R4 -19513.2839 39316.5678 - 0.0000 39351.2443 - 0.0000 40073.5220 - 0.0000 VT+F+I+G4 -19460.7198 39241.4396 - 0.0000 39284.1593 - 0.0000 40076.6994 - 0.0000 WAG+F+G4 -19465.5045 39249.0090 - 0.0000 39291.1631 - 0.0000 40079.0484 - 0.0000 WAG+F+I+G4 -19465.1081 39250.2161 - 0.0000 39292.9359 - 0.0000 40085.4759 - 0.0000 VT+F+R3 -19461.5531 39247.1061 - 0.0000 39290.9699 - 0.0000 40092.8067 - 0.0000 cpREV+G4 -19541.5569 39363.1137 - 0.0000 39395.3160 - 0.0000 40093.9661 - 0.0000 WAG+R2 -19541.4370 39364.8740 - 0.0000 39397.5630 - 0.0000 40100.9467 - 0.0000 WAG+F+R3 -19466.0560 39256.1120 - 0.0000 39299.9758 - 0.0000 40101.8126 - 0.0000 cpREV+I+G4 -19541.9754 39365.9508 - 0.0000 39398.6398 - 0.0000 40102.0235 - 0.0000 VT+F+R4 -19461.2619 39250.5238 - 0.0000 39295.5488 - 0.0000 40106.6651 - 0.0000 cpREV+R3 -19540.6763 39367.3526 - 0.0000 39401.0272 - 0.0000 40113.8661 - 0.0000 LG+G4 -19551.6256 39383.2512 - 0.0000 39415.4535 - 0.0000 40114.1036 - 0.0000 WAG+F+R4 -19465.3927 39258.7853 - 0.0000 39303.8103 - 0.0000 40114.9266 - 0.0000 VT+F+R2 -19480.8461 39281.6922 - 0.0000 39324.4120 - 0.0000 40116.9520 - 0.0000 LG+I+G4 -19551.5771 39385.1542 - 0.0000 39417.8431 - 0.0000 40121.2269 - 0.0000 cpREV+R4 -19540.0661 39370.1323 - 0.0000 39404.8088 - 0.0000 40127.0865 - 0.0000 LG+R3 -19553.8392 39393.6784 - 0.0000 39427.3530 - 0.0000 40140.1919 - 0.0000 WAG+F+R2 -19493.3750 39306.7501 - 0.0000 39349.4698 - 0.0000 40142.0099 - 0.0000 LG+R4 -19552.9763 39395.9526 - 0.0000 39430.6291 - 0.0000 40152.9068 - 0.0000 cpREV+R2 -19576.3300 39434.6600 - 0.0000 39467.3490 - 0.0000 40170.7327 - 0.0000 LG+F+G4 -19518.2163 39354.4327 - 0.0000 39396.5868 - 0.0000 40184.4721 - 0.0000 LG+R2 -19584.2442 39450.4884 - 0.0000 39483.1774 - 0.0000 40186.5612 - 0.0000 LG+F+I+G4 -19518.1867 39356.3734 - 0.0000 39399.0931 - 0.0000 40191.6332 - 0.0000 cpREV+F+G4 -19527.0524 39372.1048 - 0.0000 39414.2589 - 0.0000 40202.1443 - 0.0000 cpREV+F+I+G4 -19527.2742 39374.5484 - 0.0000 39417.2681 - 0.0000 40209.8082 - 0.0000 LG+F+R3 -19520.3652 39364.7304 - 0.0000 39408.5941 - 0.0000 40210.4309 - 0.0000 cpREV+F+R3 -19526.1500 39376.3000 - 0.0000 39420.1638 - 0.0000 40222.0006 - 0.0000 LG+F+R4 -19519.5526 39367.1052 - 0.0000 39412.1302 - 0.0000 40223.2465 - 0.0000 cpREV+F+R4 -19525.4202 39378.8404 - 0.0000 39423.8654 - 0.0000 40234.9817 - 0.0000 LG+F+R2 -19549.8270 39419.6539 - 0.0000 39462.3737 - 0.0000 40254.9137 - 0.0000 mtInv+F+G4 -19554.0105 39426.0211 - 0.0000 39468.1752 - 0.0000 40256.0605 - 0.0000 PMB+G4 -19623.7143 39527.4286 - 0.0000 39559.6309 - 0.0000 40258.2810 - 0.0000 mtInv+F+I+G4 -19554.1278 39428.2556 - 0.0000 39470.9754 - 0.0000 40263.5155 - 0.0000 PMB+I+G4 -19623.5614 39529.1229 - 0.0000 39561.8118 - 0.0000 40265.1956 - 0.0000 PMB+R3 -19624.1938 39534.3875 - 0.0000 39568.0621 - 0.0000 40280.9010 - 0.0000 mtInv+F+R3 -19556.0283 39436.0566 - 0.0000 39479.9204 - 0.0000 40281.7571 - 0.0000 cpREV+F+R2 -19563.6026 39447.2053 - 0.0000 39489.9250 - 0.0000 40282.4651 - 0.0000 PMB+R4 -19623.2117 39536.4234 - 0.0000 39571.0999 - 0.0000 40293.3776 - 0.0000 mtInv+F+R4 -19555.5483 39439.0967 - 0.0000 39484.1216 - 0.0000 40295.2380 - 0.0000 PMB+R2 -19641.7128 39565.4257 - 0.0000 39598.1147 - 0.0000 40301.4984 - 0.0000 Blosum62+G4 -19660.8604 39601.7207 - 0.0000 39633.9230 - 0.0000 40332.5731 - 0.0000 mtInv+F+R2 -19589.1809 39498.3619 - 0.0000 39541.0816 - 0.0000 40333.6217 - 0.0000 Blosum62+I+G4 -19660.6112 39603.2223 - 0.0000 39635.9113 - 0.0000 40339.2950 - 0.0000 Blosum62+R3 -19661.8515 39609.7029 - 0.0000 39643.3775 - 0.0000 40356.2164 - 0.0000 PMB+F+G4 -19607.0632 39532.1263 - 0.0000 39574.2804 - 0.0000 40362.1658 - 0.0000 Blosum62+R4 -19661.0685 39612.1370 - 0.0000 39646.8135 - 0.0000 40369.0912 - 0.0000 PMB+F+I+G4 -19606.9189 39533.8379 - 0.0000 39576.5576 - 0.0000 40369.0977 - 0.0000 Dayhoff+F+G4 -19612.5717 39543.1433 - 0.0000 39585.2974 - 0.0000 40373.1828 - 0.0000 Blosum62+R2 -19678.7936 39639.5871 - 0.0000 39672.2761 - 0.0000 40375.6599 - 0.0000 DCMut+F+G4 -19613.9083 39545.8166 - 0.0000 39587.9707 - 0.0000 40375.8560 - 0.0000 Dayhoff+F+I+G4 -19611.4290 39542.8581 - 0.0000 39585.5778 - 0.0000 40378.1179 - 0.0000 DCMut+F+I+G4 -19612.9313 39545.8627 - 0.0000 39588.5824 - 0.0000 40381.1225 - 0.0000 PMB+F+R3 -19607.4750 39538.9501 - 0.0000 39582.8138 - 0.0000 40384.6506 - 0.0000 PMB+F+R4 -19606.5343 39541.0685 - 0.0000 39586.0935 - 0.0000 40397.2098 - 0.0000 Dayhoff+F+R3 -19613.9946 39551.9893 - 0.0000 39595.8530 - 0.0000 40397.6898 - 0.0000 DCMut+F+R3 -19615.0973 39554.1946 - 0.0000 39598.0583 - 0.0000 40399.8951 - 0.0000 Dayhoff+F+R4 -19610.4821 39548.9642 - 0.0000 39593.9891 - 0.0000 40405.1055 - 0.0000 DCMut+F+R4 -19610.7927 39549.5854 - 0.0000 39594.6103 - 0.0000 40405.7267 - 0.0000 PMB+F+R2 -19626.0027 39572.0054 - 0.0000 39614.7252 - 0.0000 40407.2653 - 0.0000 Blosum62+F+G4 -19634.2357 39586.4714 - 0.0000 39628.6255 - 0.0000 40416.5108 - 0.0000 mtMet+F+G4 -19634.8936 39587.7872 - 0.0000 39629.9413 - 0.0000 40417.8266 - 0.0000 Blosum62+F+I+G4 -19633.9264 39587.8529 - 0.0000 39630.5726 - 0.0000 40423.1127 - 0.0000 Dayhoff+G4 -19707.2859 39694.5718 - 0.0000 39726.7740 - 0.0000 40425.4241 - 0.0000 mtMet+F+I+G4 -19635.0973 39590.1946 - 0.0000 39632.9144 - 0.0000 40425.4545 - 0.0000 DCMut+G4 -19708.5441 39697.0883 - 0.0000 39729.2906 - 0.0000 40427.9406 - 0.0000 VT+I -19708.5716 39697.1432 - 0.0000 39729.3455 - 0.0000 40427.9955 - 0.0000 Dayhoff+I+G4 -19705.6764 39693.3529 - 0.0000 39726.0419 - 0.0000 40429.4256 - 0.0000 DCMut+I+G4 -19707.3248 39696.6496 - 0.0000 39729.3386 - 0.0000 40432.7224 - 0.0000 JTT+I -19712.0859 39704.1718 - 0.0000 39736.3741 - 0.0000 40435.0241 - 0.0000 Blosum62+F+R3 -19635.0518 39594.1036 - 0.0000 39637.9674 - 0.0000 40439.8041 - 0.0000 rtREV+F+G4 -19647.3930 39612.7860 - 0.0000 39654.9401 - 0.0000 40442.8254 - 0.0000 mtMet+F+R3 -19636.9583 39597.9166 - 0.0000 39641.7804 - 0.0000 40443.6172 - 0.0000 JTTDCMut+I -19716.4666 39712.9331 - 0.0000 39745.1354 - 0.0000 40443.7854 - 0.0000 Dayhoff+F+R2 -19646.2065 39612.4131 - 0.0000 39655.1328 - 0.0000 40447.6729 - 0.0000 rtREV+F+I+G4 -19647.1759 39614.3518 - 0.0000 39657.0715 - 0.0000 40449.6116 - 0.0000 Dayhoff+R3 -19708.5898 39703.1797 - 0.0000 39736.8543 - 0.0000 40449.6931 - 0.0000 DCMut+F+R2 -19647.9382 39615.8764 - 0.0000 39658.5962 - 0.0000 40451.1362 - 0.0000 DCMut+R3 -19709.5040 39705.0081 - 0.0000 39738.6827 - 0.0000 40451.5215 - 0.0000 Blosum62+F+R4 -19634.4363 39596.8726 - 0.0000 39641.8976 - 0.0000 40453.0139 - 0.0000 mtMet+F+R4 -19636.6531 39601.3061 - 0.0000 39646.3311 - 0.0000 40457.4474 - 0.0000 DCMut+R4 -19705.3523 39700.7045 - 0.0000 39735.3810 - 0.0000 40457.6587 - 0.0000 Dayhoff+R4 -19705.3674 39700.7347 - 0.0000 39735.4112 - 0.0000 40457.6889 - 0.0000 Blosum62+F+R2 -19653.5076 39627.0151 - 0.0000 39669.7349 - 0.0000 40462.2749 - 0.0000 rtREV+F+R3 -19648.9288 39621.8576 - 0.0000 39665.7213 - 0.0000 40467.5581 - 0.0000 rtREV+F+R4 -19647.1785 39622.3569 - 0.0000 39667.3819 - 0.0000 40478.4982 - 0.0000 JTT+F+I -19674.0450 39666.0900 - 0.0000 39708.2441 - 0.0000 40496.1294 - 0.0000 Dayhoff+R2 -19741.0192 39764.0384 - 0.0000 39796.7274 - 0.0000 40500.1111 - 0.0000 DCMut+R2 -19742.7257 39767.4513 - 0.0000 39800.1403 - 0.0000 40503.5241 - 0.0000 JTTDCMut+F+I -19679.1080 39676.2160 - 0.0000 39718.3701 - 0.0000 40506.2555 - 0.0000 rtREV+F+R2 -19677.1981 39674.3962 - 0.0000 39717.1160 - 0.0000 40509.6561 - 0.0000 WAG+I -19750.1498 39780.2997 - 0.0000 39812.5020 - 0.0000 40511.1520 - 0.0000 VT+F+I -19684.2778 39686.5557 - 0.0000 39728.7098 - 0.0000 40516.5951 - 0.0000 mtMet+F+R2 -19683.2729 39686.5458 - 0.0000 39729.2655 - 0.0000 40521.8056 - 0.0000 HIVb+F+G4 -19688.4090 39694.8181 - 0.0000 39736.9722 - 0.0000 40524.8575 - 0.0000 HIVb+F+I+G4 -19687.9103 39695.8207 - 0.0000 39738.5404 - 0.0000 40531.0805 - 0.0000 FLU+G4 -19768.7670 39817.5340 - 0.0000 39849.7362 - 0.0000 40548.3863 - 0.0000 HIVb+F+R3 -19690.2264 39704.4529 - 0.0000 39748.3167 - 0.0000 40550.1534 - 0.0000 FLU+I+G4 -19768.1767 39818.3534 - 0.0000 39851.0424 - 0.0000 40554.4261 - 0.0000 HIVb+F+R4 -19686.6354 39701.2708 - 0.0000 39746.2957 - 0.0000 40557.4121 - 0.0000 FLU+F+G4 -19706.6600 39731.3201 - 0.0000 39773.4742 - 0.0000 40561.3595 - 0.0000 rtREV+G4 -19777.8605 39835.7210 - 0.0000 39867.9233 - 0.0000 40566.5733 - 0.0000 FLU+F+I+G4 -19706.3601 39732.7202 - 0.0000 39775.4400 - 0.0000 40567.9801 - 0.0000 WAG+F+I -19710.4187 39738.8374 - 0.0000 39780.9915 - 0.0000 40568.8769 - 0.0000 rtREV+I+G4 -19777.4642 39836.9283 - 0.0000 39869.6173 - 0.0000 40573.0010 - 0.0000 FLU+R3 -19770.8053 39827.6106 - 0.0000 39861.2852 - 0.0000 40574.1241 - 0.0000 HIVb+G4 -19783.5812 39847.1624 - 0.0000 39879.3647 - 0.0000 40578.0147 - 0.0000 HIVb+I+G4 -19782.9327 39847.8654 - 0.0000 39880.5544 - 0.0000 40583.9382 - 0.0000 FLU+R4 -19769.0528 39828.1057 - 0.0000 39862.7822 - 0.0000 40585.0599 - 0.0000 FLU+F+R3 -19708.6253 39741.2506 - 0.0000 39785.1144 - 0.0000 40586.9512 - 0.0000 rtREV+R3 -19779.3086 39844.6173 - 0.0000 39878.2918 - 0.0000 40591.1307 - 0.0000 FLU+F+R4 -19707.5089 39743.0177 - 0.0000 39788.0427 - 0.0000 40599.1590 - 0.0000 HIVb+R3 -19783.8536 39853.7072 - 0.0000 39887.3818 - 0.0000 40600.2207 - 0.0000 rtREV+R4 -19777.9751 39845.9502 - 0.0000 39880.6267 - 0.0000 40602.9044 - 0.0000 HIVb+R4 -19781.0613 39852.1225 - 0.0000 39886.7990 - 0.0000 40609.0767 - 0.0000 rtREV+R2 -19808.8336 39899.6672 - 0.0000 39932.3562 - 0.0000 40635.7400 - 0.0000 mtREV+F+G4 -19749.4573 39816.9146 - 0.0000 39859.0687 - 0.0000 40646.9541 - 0.0000 cpREV+I -19820.3590 39920.7180 - 0.0000 39952.9202 - 0.0000 40651.5703 - 0.0000 HIVb+F+R2 -19748.1904 39816.3809 - 0.0000 39859.1006 - 0.0000 40651.6407 - 0.0000 mtREV+F+I+G4 -19749.2944 39818.5888 - 0.0000 39861.3085 - 0.0000 40653.8486 - 0.0000 FLU+R2 -19827.5415 39937.0830 - 0.0000 39969.7720 - 0.0000 40673.1557 - 0.0000 mtREV+F+R3 -19753.1697 39830.3394 - 0.0000 39874.2032 - 0.0000 40676.0399 - 0.0000 FLU+F+R2 -19764.8882 39849.7765 - 0.0000 39892.4962 - 0.0000 40685.0363 - 0.0000 mtREV+F+R4 -19750.7758 39829.5515 - 0.0000 39874.5765 - 0.0000 40685.6928 - 0.0000 HIVb+R2 -19844.7820 39971.5640 - 0.0000 40004.2530 - 0.0000 40707.6367 - 0.0000 mtZOA+F+G4 -19781.0548 39880.1095 - 0.0000 39922.2636 - 0.0000 40710.1490 - 0.0000 PMB+I -19852.7720 39985.5440 - 0.0000 40017.7463 - 0.0000 40716.3963 - 0.0000 mtZOA+F+I+G4 -19781.4550 39882.9099 - 0.0000 39925.6297 - 0.0000 40718.1697 - 0.0000 mtZOA+F+R3 -19786.5969 39897.1938 - 0.0000 39941.0576 - 0.0000 40742.8943 - 0.0000 LG+I -19867.8786 40015.7573 - 0.0000 40047.9596 - 0.0000 40746.6096 - 0.0000 mtZOA+F+R4 -19784.7835 39897.5671 - 0.0000 39942.5920 - 0.0000 40753.7084 - 0.0000 cpREV+F+I -19803.9177 39925.8354 - 0.0000 39967.9895 - 0.0000 40755.8748 - 0.0000 mtREV+F+R2 -19805.0146 39930.0292 - 0.0000 39972.7490 - 0.0000 40765.2890 - 0.0000 VT -19884.3099 40046.6197 - 0.0000 40078.3394 - 0.0000 40772.2517 - 0.0000 Blosum62+I -19891.5014 40063.0028 - 0.0000 40095.2051 - 0.0000 40793.8551 - 0.0000 PMB+F+I -19837.4930 39992.9861 - 0.0000 40035.1402 - 0.0000 40823.0255 - 0.0000 LG+F+I -19837.6322 39993.2644 - 0.0000 40035.4185 - 0.0000 40823.3038 - 0.0000 JTT -19910.3580 40098.7161 - 0.0000 40130.4357 - 0.0000 40824.3480 - 0.0000 JTTDCMut -19914.1232 40106.2464 - 0.0000 40137.9660 - 0.0000 40831.8784 - 0.0000 mtZOA+F+R2 -19841.9291 40003.8583 - 0.0000 40046.5780 - 0.0000 40839.1181 - 0.0000 WAG -19928.1768 40134.3536 - 0.0000 40166.0733 - 0.0000 40859.9856 - 0.0000 VT+F -19862.0794 40040.1588 - 0.0000 40081.7515 - 0.0000 40864.9778 - 0.0000 mtVer+F+G4 -19859.4646 40036.9291 - 0.0000 40079.0832 - 0.0000 40866.9686 - 0.0000 Blosum62+F+I -19862.7763 40043.5526 - 0.0000 40085.7067 - 0.0000 40873.5920 - 0.0000 mtVer+F+I+G4 -19859.4852 40038.9704 - 0.0000 40081.6901 - 0.0000 40874.2302 - 0.0000 JTT+F -19874.5538 40065.1076 - 0.0000 40106.7003 - 0.0000 40889.9266 - 0.0000 mtVer+F+R3 -19864.8491 40053.6983 - 0.0000 40097.5621 - 0.0000 40899.3989 - 0.0000 JTTDCMut+F -19879.3702 40074.7404 - 0.0000 40116.3331 - 0.0000 40899.5594 - 0.0000 mtVer+F+R4 -19864.3961 40056.7923 - 0.0000 40101.8172 - 0.0000 40912.9336 - 0.0000 WAG+F -19893.9731 40103.9461 - 0.0000 40145.5388 - 0.0000 40928.7652 - 0.0000 Dayhoff+F+I -19895.4169 40108.8338 - 0.0000 40150.9879 - 0.0000 40938.8732 - 0.0000 DCMut+F+I -19896.5864 40111.1727 - 0.0000 40153.3268 - 0.0000 40941.2122 - 0.0000 cpREV -19980.7028 40239.4056 - 0.0000 40271.1252 - 0.0000 40965.0376 - 0.0000 Dayhoff+I -19987.3310 40254.6621 - 0.0000 40286.8644 - 0.0000 40985.5144 - 0.0000 DCMut+I -19988.2455 40256.4911 - 0.0000 40288.6934 - 0.0000 40987.3434 - 0.0000 mtInv+F+I -19925.9923 40169.9846 - 0.0000 40212.1387 - 0.0000 41000.0240 - 0.0000 mtVer+F+R2 -19924.2048 40168.4097 - 0.0000 40211.1294 - 0.0000 41003.6695 - 0.0000 PMB -20021.3577 40320.7154 - 0.0000 40352.4350 - 0.0000 41046.3474 - 0.0000 cpREV+F -19969.4640 40254.9281 - 0.0000 40296.5208 - 0.0000 41079.7471 - 0.0000 rtREV+F+I -19968.1571 40254.3143 - 0.0000 40296.4684 - 0.0000 41084.3537 - 0.0000 Blosum62 -20061.3601 40400.7203 - 0.0000 40432.4399 - 0.0000 41126.3522 - 0.0000 LG -20072.9626 40423.9251 - 0.0000 40455.6447 - 0.0000 41149.5571 - 0.0000 PMB+F -20009.3869 40334.7738 - 0.0000 40376.3666 - 0.0000 41159.5929 - 0.0000 rtREV+I -20086.2706 40452.5413 - 0.0000 40484.7435 - 0.0000 41183.3936 - 0.0000 Blosum62+F -20036.4459 40388.8919 - 0.0000 40430.4846 - 0.0000 41213.7109 - 0.0000 LG+F -20047.5659 40411.1317 - 0.0000 40452.7245 - 0.0000 41235.9508 - 0.0000 HIVw+F+G4 -20044.1178 40406.2356 - 0.0000 40448.3897 - 0.0000 41236.2750 - 0.0000 HIVw+F+I+G4 -20042.8583 40405.7167 - 0.0000 40448.4364 - 0.0000 41240.9765 - 0.0000 HIVw+F+R3 -20045.0872 40414.1745 - 0.0000 40458.0382 - 0.0000 41259.8750 - 0.0000 HIVw+F+R4 -20041.0720 40410.1441 - 0.0000 40455.1691 - 0.0000 41266.2854 - 0.0000 FLU+I -20146.1635 40572.3270 - 0.0000 40604.5293 - 0.0000 41303.1793 - 0.0000 mtMet+F+I -20080.8711 40479.7422 - 0.0000 40521.8963 - 0.0000 41309.7816 - 0.0000 Dayhoff+F -20102.3317 40520.6634 - 0.0000 40562.2561 - 0.0000 41345.4825 - 0.0000 DCMut+F -20103.4033 40522.8066 - 0.0000 40564.3994 - 0.0000 41347.6257 - 0.0000 HIVb+F+I -20102.4736 40522.9471 - 0.0000 40565.1012 - 0.0000 41352.9866 - 0.0000 FLU+F+I -20106.2163 40530.4325 - 0.0000 40572.5866 - 0.0000 41360.4720 - 0.0000 HIVb+I -20174.9908 40629.9816 - 0.0000 40662.1839 - 0.0000 41360.8340 - 0.0000 HIVw+F+R2 -20111.3818 40542.7636 - 0.0000 40585.4833 - 0.0000 41378.0234 - 0.0000 Dayhoff -20190.3191 40658.6382 - 0.0000 40690.3578 - 0.0000 41384.2701 - 0.0000 DCMut -20191.1273 40660.2546 - 0.0000 40691.9742 - 0.0000 41385.8865 - 0.0000 mtInv+F -20131.1920 40578.3840 - 0.0000 40619.9768 - 0.0000 41403.2031 - 0.0000 mtREV+F+I -20154.0503 40626.1006 - 0.0000 40668.2547 - 0.0000 41456.1401 - 0.0000 rtREV+F -20184.1332 40684.2665 - 0.0000 40725.8592 - 0.0000 41509.0856 - 0.0000 mtMAM+F+G4 -20185.5340 40689.0679 - 0.0000 40731.2220 - 0.0000 41519.1074 - 0.0000 mtART+F+G4 -20187.1406 40692.2813 - 0.0000 40734.4354 - 0.0000 41522.3207 - 0.0000 mtMAM+F+I+G4 -20185.6696 40691.3392 - 0.0000 40734.0589 - 0.0000 41526.5990 - 0.0000 mtART+F+I+G4 -20187.6462 40695.2924 - 0.0000 40738.0121 - 0.0000 41530.5522 - 0.0000 mtART+F+R3 -20204.9347 40733.8694 - 0.0000 40777.7332 - 0.0000 41579.5700 - 0.0000 mtART+F+R4 -20198.6155 40725.2310 - 0.0000 40770.2559 - 0.0000 41581.3723 - 0.0000 mtMAM+F+R4 -20198.7076 40725.4152 - 0.0000 40770.4402 - 0.0000 41581.5565 - 0.0000 mtMAM+F+R5 -20191.5463 40715.0926 - 0.0000 40761.2960 - 0.0000 41581.6747 - 0.0000 rtREV -20294.6022 40867.2043 - 0.0000 40898.9240 - 0.0000 41592.8363 - 0.0000 mtMAM+F+R3 -20214.9354 40753.8708 - 0.0000 40797.7346 - 0.0000 41599.5714 - 0.0000 HIVw+G4 -20304.2999 40888.5997 - 0.0000 40920.8020 - 0.0000 41619.4521 - 0.0000 HIVw+I+G4 -20303.0560 40888.1119 - 0.0000 40920.8009 - 0.0000 41624.1846 - 0.0000 mtMet+G4 -20315.8469 40911.6937 - 0.0000 40943.8960 - 0.0000 41642.5461 - 0.0000 HIVw+R3 -20306.2418 40898.4835 - 0.0000 40932.1581 - 0.0000 41644.9970 - 0.0000 mtMet+I+G4 -20316.3135 40914.6270 - 0.0000 40947.3159 - 0.0000 41650.6997 - 0.0000 HIVw+R4 -20301.9607 40893.9214 - 0.0000 40928.5979 - 0.0000 41650.8756 - 0.0000 mtZOA+G4 -20327.2897 40934.5794 - 0.0000 40966.7817 - 0.0000 41665.4317 - 0.0000 mtMet+R3 -20320.1192 40926.2384 - 0.0000 40959.9130 - 0.0000 41672.7519 - 0.0000 mtZOA+I+G4 -20327.8731 40937.7463 - 0.0000 40970.4352 - 0.0000 41673.8190 - 0.0000 mtMet+R4 -20319.8763 40929.7525 - 0.0000 40964.4290 - 0.0000 41686.7067 - 0.0000 mtART+F+R2 -20269.1738 40858.3477 - 0.0000 40901.0674 - 0.0000 41693.6075 - 0.0000 mtZOA+F+I -20280.2704 40878.5407 - 0.0000 40920.6948 - 0.0000 41708.5802 - 0.0000 mtZOA+R3 -20338.9541 40963.9081 - 0.0000 40997.5827 - 0.0000 41710.4216 - 0.0000 mtZOA+R4 -20334.0000 40957.9999 - 0.0000 40992.6764 - 0.0000 41714.9541 - 0.0000 mtMAM+F+R2 -20286.6026 40893.2053 - 0.0000 40935.9250 - 0.0000 41728.4651 - 0.0000 mtMet+F -20305.9366 40927.8732 - 0.0000 40969.4659 - 0.0000 41752.6922 - 0.0000 FLU -20381.0900 41040.1801 - 0.0000 41071.8997 - 0.0000 41765.8120 - 0.0000 mtMet+R2 -20374.6077 41031.2153 - 0.0000 41063.9043 - 0.0000 41767.2881 - 0.0000 HIVw+R2 -20379.5719 41041.1439 - 0.0000 41073.8329 - 0.0000 41777.2166 - 0.0000 mtZOA+R2 -20395.2426 41072.4852 - 0.0000 41105.1742 - 0.0000 41808.5579 - 0.0000 FLU+F -20339.7438 40995.4875 - 0.0000 41037.0802 - 0.0000 41820.3066 - 0.0000 mtInv+G4 -20424.3868 41128.7737 - 0.0000 41160.9759 - 0.0000 41859.6260 - 0.0000 HIVb+F -20362.9004 41041.8008 - 0.0000 41083.3935 - 0.0000 41866.6199 - 0.0000 mtInv+I+G4 -20424.8200 41131.6401 - 0.0000 41164.3291 - 0.0000 41867.7128 - 0.0000 HIVb -20432.0712 41142.1424 - 0.0000 41173.8620 - 0.0000 41867.7744 - 0.0000 mtInv+R3 -20424.5549 41135.1097 - 0.0000 41168.7843 - 0.0000 41881.6232 - 0.0000 mtREV+F -20373.8949 41063.7898 - 0.0000 41105.3826 - 0.0000 41888.6089 - 0.0000 mtInv+R4 -20424.1113 41138.2225 - 0.0000 41172.8990 - 0.0000 41895.1767 - 0.0000 mtVer+F+I -20373.7965 41065.5929 - 0.0000 41107.7470 - 0.0000 41895.6324 - 0.0000 mtREV+G4 -20450.8966 41181.7933 - 0.0000 41213.9956 - 0.0000 41912.6456 - 0.0000 mtREV+I+G4 -20450.8745 41183.7489 - 0.0000 41216.4379 - 0.0000 41919.8216 - 0.0000 mtInv+R2 -20459.2306 41200.4611 - 0.0000 41233.1501 - 0.0000 41936.5339 - 0.0000 mtREV+R3 -20458.2925 41202.5849 - 0.0000 41236.2595 - 0.0000 41949.0984 - 0.0000 mtREV+R4 -20455.6374 41201.2747 - 0.0000 41235.9512 - 0.0000 41958.2289 - 0.0000 HIVw+F+I -20415.8037 41149.6075 - 0.0000 41191.7616 - 0.0000 41979.6469 - 0.0000 mtREV+R2 -20511.5988 41305.1977 - 0.0000 41337.8866 - 0.0000 42041.2704 - 0.0000 mtVer+G4 -20553.0322 41386.0644 - 0.0000 41418.2667 - 0.0000 42116.9167 - 0.0000 mtVer+I+G4 -20553.1076 41388.2151 - 0.0000 41420.9041 - 0.0000 42124.2879 - 0.0000 mtVer+R3 -20561.3924 41408.7849 - 0.0000 41442.4595 - 0.0000 42155.2984 - 0.0000 mtZOA+F -20508.5032 41333.0065 - 0.0000 41374.5992 - 0.0000 42157.8255 - 0.0000 mtVer+R4 -20560.7077 41411.4153 - 0.0000 41446.0918 - 0.0000 42168.3695 - 0.0000 mtVer+R2 -20626.7044 41535.4088 - 0.0000 41568.0977 - 0.0000 42271.4815 - 0.0000 HIVw+I -20686.5251 41653.0501 - 0.0000 41685.2524 - 0.0000 42383.9024 - 0.0000 mtVer+F -20650.5637 41617.1274 - 0.0000 41658.7201 - 0.0000 42441.9464 - 0.0000 HIVw+F -20686.5998 41689.1996 - 0.0000 41730.7923 - 0.0000 42514.0187 - 0.0000 mtART+G4 -20886.8986 42053.7971 - 0.0000 42085.9994 - 0.0000 42784.6494 - 0.0000 mtART+I+G4 -20887.2773 42056.5546 - 0.0000 42089.2436 - 0.0000 42792.6273 - 0.0000 mtART+F+I -20823.9095 41965.8190 - 0.0000 42007.9731 - 0.0000 42795.8584 - 0.0000 mtMAM+G4 -20905.0365 42090.0729 - 0.0000 42122.2752 - 0.0000 42820.9253 - 0.0000 mtMet+I -20907.3423 42094.6847 - 0.0000 42126.8870 - 0.0000 42825.5370 - 0.0000 mtMAM+I+G4 -20905.3997 42092.7994 - 0.0000 42125.4884 - 0.0000 42828.8721 - 0.0000 mtART+R6 -20885.7366 42069.4733 - 0.0000 42106.2029 - 0.0000 42847.3090 - 0.0000 mtART+R5 -20893.8916 42081.7832 - 0.0000 42117.4781 - 0.0000 42849.1782 - 0.0000 mtART+R7 -20881.5326 42065.0652 - 0.0000 42102.8462 - 0.0000 42853.3416 - 0.0000 mtART+R4 -20907.7381 42105.4762 - 0.0000 42140.1527 - 0.0000 42862.4304 - 0.0000 mtART+R3 -20916.6368 42119.2737 - 0.0000 42152.9483 - 0.0000 42865.7871 - 0.0000 mtMAM+F+I -20859.1271 42036.2541 - 0.0000 42078.4082 - 0.0000 42866.2936 - 0.0000 mtInv+I -20930.0445 42140.0890 - 0.0000 42172.2913 - 0.0000 42870.9413 - 0.0000 mtMAM+R6 -20907.9189 42113.8378 - 0.0000 42150.5675 - 0.0000 42891.6735 - 0.0000 mtMAM+R5 -20915.9471 42125.8943 - 0.0000 42161.5891 - 0.0000 42893.2892 - 0.0000 mtMAM+R7 -20903.3955 42108.7911 - 0.0000 42146.5721 - 0.0000 42897.0675 - 0.0000 mtMAM+R4 -20926.1094 42142.2188 - 0.0000 42176.8953 - 0.0000 42899.1730 - 0.0000 HIVw -20959.4144 42196.8288 - 0.0000 42228.5485 - 0.0000 42922.4608 - 0.0000 mtMAM+R3 -20956.8004 42199.6009 - 0.0000 42233.2754 - 0.0000 42946.1143 - 0.0000 mtREV+I -20968.0623 42216.1245 - 0.0000 42248.3268 - 0.0000 42946.9769 - 0.0000 mtART+R2 -21003.1548 42288.3095 - 0.0000 42320.9985 - 0.0000 43024.3822 - 0.0000 mtZOA+I -21007.8851 42295.7703 - 0.0000 42327.9726 - 0.0000 43026.6226 - 0.0000 mtMAM+R2 -21060.4981 42402.9962 - 0.0000 42435.6851 - 0.0000 43139.0689 - 0.0000 mtMet -21151.1698 42580.3395 - 0.0000 42612.0592 - 0.0000 43305.9715 - 0.0000 mtInv -21156.4875 42590.9750 - 0.0000 42622.6947 - 0.0000 43316.6070 - 0.0000 mtART+F -21093.0296 42502.0593 - 0.0000 42543.6520 - 0.0000 43326.8783 - 0.0000 mtREV -21203.6075 42685.2150 - 0.0000 42716.9346 - 0.0000 43410.8469 - 0.0000 mtMAM+F -21180.7892 42677.5783 - 0.0000 42719.1710 - 0.0000 43502.3974 - 0.0000 mtVer+I -21248.8889 42777.7779 - 0.0000 42809.9801 - 0.0000 43508.6302 - 0.0000 mtZOA -21266.7043 42811.4085 - 0.0000 42843.1282 - 0.0000 43537.0405 - 0.0000 mtVer -21535.6397 43349.2793 - 0.0000 43380.9990 - 0.0000 44074.9113 - 0.0000 mtART+I -21726.7884 43733.5769 - 0.0000 43765.7791 - 0.0000 44464.4292 - 0.0000 mtMAM+I -21817.0040 43914.0080 - 0.0000 43946.2103 - 0.0000 44644.8604 - 0.0000 mtART -22043.0689 44364.1379 - 0.0000 44395.8575 - 0.0000 45089.7698 - 0.0000 mtMAM -22162.4554 44602.9107 - 0.0000 44634.6304 - 0.0000 45328.5427 - 0.0000 AIC, w-AIC : Akaike information criterion scores and weights. AICc, w-AICc : Corrected AIC scores and weights. BIC, w-BIC : Bayesian information criterion scores and weights. Plus signs denote the 95% confidence sets. Minus signs denote significant exclusion. SUBSTITUTION PROCESS -------------------- Model of substitution: JTT+G4 State frequencies: (model) Model of rate heterogeneity: Gamma with 4 categories Gamma shape alpha: 1.0122 Category Relative_rate Proportion 1 0.1394 0.2500 2 0.4804 0.2500 3 1.0020 0.2500 4 2.3783 0.2500 Relative rates are computed as MEAN of the portion of the Gamma distribution falling in the category. MAXIMUM LIKELIHOOD TREE ----------------------- Log-likelihood of the tree: -19420.6649 (s.e. 427.6458) Unconstrained log-likelihood (without tree): -9375.0823 Number of free parameters (#branches + #model parameters): 140 Akaike information criterion (AIC) score: 39121.3298 Corrected Akaike information criterion (AICc) score: 39153.5321 Bayesian information criterion (BIC) score: 39852.1822 Total tree length (sum of branch lengths): 5.7200 Sum of internal branch lengths: 5.2231 (91.3131% of tree length) WARNING: 5 near-zero internal branches (<0.0007) should be treated with caution Such branches are denoted by '**' in the figure below NOTE: Tree is UNROOTED although outgroup taxon 'GOBAR_AA36532' is drawn at root Numbers in parentheses are ultrafast bootstrap support (%) +**GOBAR_AA36532 | | +--Cotton_A_24667 +--| (97) | +--Gh_A07G0856 | | +**GOBAR_DD21834 +--| (99) | +--Gorai.001G106500 | +**| (43) | | | +**Cotton_A_13344 | | | +--| (94) | | | | | +--Gorai.008G199100 | | | | +--| (100) | | | | | +--Gh_D12G1807 | | | | +--| (85) | | | | +--GOBAR_DD30619 | | | +-----------------------------| (100) | | | | +**Gh_A12G2653 | | +--------------------------| (100) | | | +**Gorai.001G017400 | | | +**| (63) | | | | +**GOBAR_DD05976 | | | +--| (96) | | | | +--Gh_D07G0136 | | | +**| (50) | | | | | +**GOBAR_AA19212 | | | | +--| (97) | | | | +--Gh_A07G0143 | | | +----------------| (100) | | | | +--Cotton_A_05673 | | | +--| (100) | | | | | +--Gh_A08G0982 | | | | | +--| (90) | | | | | | +--GOBAR_AA08909 | | | | | +--| (97) | | | | | | +--Cotton_A_31123 | | | | | +--| (100) | | | | | | | +--Gorai.004G137300 | | | | | | +--| (100) | | | | | | +--Gh_D08G1257 | | | | | +--| (85) | | | | | | | +--Gh_A12G2669 | | | | | | | +--| (100) | | | | | | | | +--GOBAR_AA23701 | | | | | | | +--| (98) | | | | | | | | +--Cotton_A_23171 | | | | | | +--| (100) | | | | | | | +--Gorai.008G250500 | | | | | | +--| (99) | | | | | | +--Gh_D12G2750 | | | | +------| (100) | | | | | +**Gh_A02G1791 | | | | | +--| (99) | | | | | | | +--Cotton_A_38536 | | | | | | +--| (100) | | | | | | +**GOBAR_AA24991 | | | | +--| (95) | | | | | +--Gorai.003G085100 | | | | +--| (80) | | | | +--Gh_D03G0688 | | +--| (93) | | | +--Gorai.007G299500 | | | +--| (96) | | | | | +**Gh_D11G2743 | | | | +**| (45) | | | | +**GOBAR_DD12974 | | | +-----| (100) | | | | | +--Gh_A11G2426 | | | | | +--| (97) | | | | | | +**GOBAR_AA19255 | | | | +--| (89) | | | | +**Cotton_A_29320 | | +---------| (100) | | | +--Gorai.002G128200 | | | +--| (92) | | | | | +--Gh_D01G0990 | | | | +--| (92) | | | | +--GOBAR_DD22521 | | | +--| (100) | | | | | +--GOBAR_AA29299 | | | | | +--| (90) | | | | | | +--Gh_A01G0943 | | | | +--| (100) | | | | +--Cotton_A_33534 | | | +--| (81) | | | | | +--Gh_A05G2211 | | | | | +--| (51) | | | | | | +--Cotton_A_18772 | | | | +--| (100) | | | | | +--Gh_D05G2471 | | | | +--| (46) | | | | +--Gorai.009G273400 | | | +--| (100) | | | | | +--Gh_D05G1864 | | | | | +--| (100) | | | | | | +--Gorai.009G202500 | | | | +--| (100) | | | | | +--GOBAR_AA06210 | | | | +--| (70) | | | | | +**Cotton_A_13752 | | | | +--| (100) | | | | +--Gh_A05G1666 | | +--| (100) | | | +--Gh_A03G0476 | | | +--| (99) | | | | +--Cotton_A_16216 | | | +--| (67) | | | | +**GOBAR_AA01568 | | | +--| (69) | | | | | +--Gh_D03G1062 | | | | +--| (100) | | | | +--GOBAR_DD02070 | | | +--| (100) | | | | +--Gorai.003G117900 | | | +--| (89) | | | | | +--Gorai.008G212100 | | | | | +--| (54) | | | | | | +--Gh_D12G1932 | | | | | +--| (88) | | | | | | +--GOBAR_DD20994 | | | | +--| (100) | | | | | +--GOBAR_AA11222 | | | | +--| (68) | | | | | +--Cotton_A_07974 | | | | +--| (90) | | | | +**Gh_A12G1774 | | +-----| (100) | | | +--Cotton_A_03631 | | | +**| (61) | | | | +--Gh_A07G0398 | | | +--| (99) | | | | +--GOBAR_AA28632 | | +--| (100) | | | +--Gorai.001G053300 | | +--| (100) | | | +--GOBAR_DD31632 | | +--| (100) | | +--Gh_D07G0463 +--| (99) +--Gh_D07G0928 Tree in newick format: (GOBAR_AA36532:0.0000020723,(Cotton_A_24667:0.0012901927,Gh_A07G0856:0.0013312095)97:0.0051808885,(GOBAR_DD21834:0.0000029763,((Gorai.001G106500:0.0039993529,(((Cotton_A_13344:0.0000024274,(Gorai.008G199100:0.0085003737,(Gh_D12G1807:0.0055622656,GOBAR_DD30619:0.0030586876)85:0.0023715631)100:0.0249159151)94:0.0014815483,Gh_A12G2653:0.0000023527)100:1.0831706040,((((((Gorai.001G017400:0.0000024274,GOBAR_DD05976:0.0000024274)63:0.0000024438,Gh_D07G0136:0.0027728619)96:0.0044748284,(GOBAR_AA19212:0.0000020344,Gh_A07G0143:0.0041482696)97:0.0022276077)50:0.0000021780,Cotton_A_05673:0.0022500244)100:0.6228395002,(((((Gh_A08G0982:0.1157707977,GOBAR_AA08909:0.0012056778)90:0.0013093225,Cotton_A_31123:0.0674984988)97:0.0090534994,(Gorai.004G137300:0.0011590141,Gh_D08G1257:0.0035654788)100:0.0103101146)100:0.1053807342,(((Gh_A12G2669:0.0011394486,GOBAR_AA23701:0.0011433360)100:0.0017585544,Cotton_A_23171:0.0012723555)98:0.0046665389,(Gorai.008G250500:0.0011418168,Gh_D12G2750:0.0045840442)99:0.0039485311)100:0.0635832029)85:0.0156841851,((Gh_A02G1791:0.0000024274,(Cotton_A_38536:0.0011492175,GOBAR_AA24991:0.0000024274)100:0.0011492278)99:0.0023048843,(Gorai.003G085100:0.0034641726,Gh_D03G0688:0.0107406290)80:0.0011482374)95:0.0261545648)100:0.2538640624)100:0.1405365546,(((Gorai.007G299500:0.0063529366,(Gh_D11G2743:0.0000024274,GOBAR_DD12974:0.0000024274)45:0.0000024274)96:0.0013665115,((Gh_A11G2426:0.0012721993,GOBAR_AA19255:0.0000021679)97:0.0051007857,Cotton_A_29320:0.0000022488)89:0.0011753179)100:0.2393715751,(((((Gorai.002G128200:0.0382816436,(Gh_D01G0990:0.0036116648,GOBAR_DD22521:0.0070428901)92:0.0038506646)92:0.0077329581,((GOBAR_AA29299:0.0048026633,Gh_A01G0943:0.0012784910)90:0.0011986783,Cotton_A_33534:0.0035194366)100:0.0087580759)100:0.0917874857,((Gh_A05G2211:0.0109142181,Cotton_A_18772:0.0173927218)51:0.0015287322,(Gh_D05G2471:0.0034345074,Gorai.009G273400:0.0045740561)46:0.0008456865)100:0.0530901384)81:0.0154004117,((Gh_D05G1864:0.0170396345,Gorai.009G202500:0.0045544492)100:0.0076108439,(GOBAR_AA06210:0.0048323402,(Cotton_A_13752:0.0000024274,Gh_A05G1666:0.0099210824)100:0.0089293956)70:0.0067712541)100:0.0560813295)100:0.1250872824,((((((Gh_A03G0476:0.0242084298,Cotton_A_16216:0.0011547185)99:0.0117794296,GOBAR_AA01568:0.0000021209)67:0.0091230039,(Gh_D03G1062:0.0023260593,GOBAR_DD02070:0.0011667495)100:0.0014734868)69:0.0066963866,Gorai.003G117900:0.0076144170)100:0.1084660432,(((Gorai.008G212100:0.0353529078,Gh_D12G1932:0.0028714314)54:0.0019558606,GOBAR_DD20994:0.0193074864)88:0.0009719747,(GOBAR_AA11222:0.0025927850,(Cotton_A_07974:0.0011516897,Gh_A12G1774:0.0000020173)90:0.0039974051)68:0.0040942722)100:0.1063507324)89:0.0257605902,(((Cotton_A_03631:0.0012037480,Gh_A07G0398:0.0011969704)61:0.0000020723,GOBAR_AA28632:0.0025239100)99:0.0102566023,(Gorai.001G053300:0.0023259522,(GOBAR_DD31632:0.0024077557,Gh_D07G0463:0.0012035298)100:0.0025037078)100:0.0274937363)100:0.0790292249)100:0.2193743185)100:0.1122023206)100:0.3732347479)93:0.0933210571)100:0.9699807378)43:0.0000024304,Gh_D07G0928:0.0026634860)99:0.0103616108)99:0.0214306218); CONSENSUS TREE -------------- Consensus tree is constructed from 1000bootstrap trees Log-likelihood of consensus tree: -19420.665769 Robinson-Foulds distance between ML tree and consensus tree: 0 Branches with support >0.000000% are kept (extended consensus) Branch lengths are optimized by maximum likelihood on original alignment Numbers in parentheses are bootstrap supports (%) +--GOBAR_AA36532 | | +--Cotton_A_24667 +--| (97) | +--Gh_A07G0856 | | +--GOBAR_DD21834 +--| (99) | +--Gorai.001G106500 | +--| (43) | | | +--Cotton_A_13344 | | | +--| (94) | | | | | +--Gorai.008G199100 | | | | +--| (100) | | | | | +--Gh_D12G1807 | | | | +--| (85) | | | | +--GOBAR_DD30619 | | | +-----------------------------| (100) | | | | +--Gh_A12G2653 | | +--------------------------| (100) | | | +--Gorai.001G017400 | | | +--| (63) | | | | +--GOBAR_DD05976 | | | +--| (96) | | | | +--Gh_D07G0136 | | | +--| (50) | | | | | +--GOBAR_AA19212 | | | | +--| (97) | | | | +--Gh_A07G0143 | | | +----------------| (100) | | | | +--Cotton_A_05673 | | | +--| (100) | | | | | +--Gh_A08G0982 | | | | | +--| (90) | | | | | | +--GOBAR_AA08909 | | | | | +--| (97) | | | | | | +--Cotton_A_31123 | | | | | +--| (100) | | | | | | | +--Gorai.004G137300 | | | | | | +--| (100) | | | | | | +--Gh_D08G1257 | | | | | +--| (85) | | | | | | | +--Gh_A12G2669 | | | | | | | +--| (100) | | | | | | | | +--GOBAR_AA23701 | | | | | | | +--| (98) | | | | | | | | +--Cotton_A_23171 | | | | | | +--| (100) | | | | | | | +--Gorai.008G250500 | | | | | | +--| (99) | | | | | | +--Gh_D12G2750 | | | | +------| (100) | | | | | +--Gh_A02G1791 | | | | | +--| (99) | | | | | | | +--Cotton_A_38536 | | | | | | +--| (100) | | | | | | +--GOBAR_AA24991 | | | | +--| (95) | | | | | +--Gorai.003G085100 | | | | +--| (80) | | | | +--Gh_D03G0688 | | +--| (93) | | | +--Gorai.007G299500 | | | +--| (96) | | | | | +--Gh_D11G2743 | | | | +--| (45) | | | | +--GOBAR_DD12974 | | | +-----| (100) | | | | | +--Gh_A11G2426 | | | | | +--| (97) | | | | | | +--GOBAR_AA19255 | | | | +--| (89) | | | | +--Cotton_A_29320 | | +---------| (100) | | | +--Gorai.002G128200 | | | +--| (92) | | | | | +--Gh_D01G0990 | | | | +--| (92) | | | | +--GOBAR_DD22521 | | | +--| (100) | | | | | +--GOBAR_AA29299 | | | | | +--| (90) | | | | | | +--Gh_A01G0943 | | | | +--| (100) | | | | +--Cotton_A_33534 | | | +--| (81) | | | | | +--Gh_A05G2211 | | | | | +--| (51) | | | | | | +--Cotton_A_18772 | | | | +--| (100) | | | | | +--Gh_D05G2471 | | | | +--| (46) | | | | +--Gorai.009G273400 | | | +--| (100) | | | | | +--Gh_D05G1864 | | | | | +--| (100) | | | | | | +--Gorai.009G202500 | | | | +--| (100) | | | | | +--GOBAR_AA06210 | | | | +--| (70) | | | | | +--Cotton_A_13752 | | | | +--| (100) | | | | +--Gh_A05G1666 | | +--| (100) | | | +--Gh_A03G0476 | | | +--| (99) | | | | +--Cotton_A_16216 | | | +--| (67) | | | | +--GOBAR_AA01568 | | | +--| (69) | | | | | +--Gh_D03G1062 | | | | +--| (100) | | | | +--GOBAR_DD02070 | | | +--| (100) | | | | +--Gorai.003G117900 | | | +--| (89) | | | | | +--Gorai.008G212100 | | | | | +--| (54) | | | | | | +--Gh_D12G1932 | | | | | +--| (88) | | | | | | +--GOBAR_DD20994 | | | | +--| (100) | | | | | +--GOBAR_AA11222 | | | | +--| (68) | | | | | +--Cotton_A_07974 | | | | +--| (90) | | | | +--Gh_A12G1774 | | +-----| (100) | | | +--Cotton_A_03631 | | | +--| (61) | | | | +--Gh_A07G0398 | | | +--| (99) | | | | +--GOBAR_AA28632 | | +--| (100) | | | +--Gorai.001G053300 | | +--| (100) | | | +--GOBAR_DD31632 | | +--| (100) | | +--Gh_D07G0463 +--| (99) +--Gh_D07G0928 Consensus tree in newick format: (GOBAR_AA36532:0.0000020723,(Cotton_A_24667:0.0012884257,Gh_A07G0856:0.0013294109)97:0.0051782077,(GOBAR_DD21834:0.0000020723,((Gorai.001G106500:0.0039969261,(((Cotton_A_13344:0.0000024305,(Gorai.008G199100:0.0084962841,(Gh_D12G1807:0.0055610093,GOBAR_DD30619:0.0030563925)85:0.0023690823)100:0.0249050766)94:0.0014799487,Gh_A12G2653:0.0000024305)100:1.0824801756,((((((Gorai.001G017400:0.0000024274,GOBAR_DD05976:0.0000024274)63:0.0000024274,Gh_D07G0136:0.0027706939)96:0.0044725490,(GOBAR_AA19212:0.0000024274,Gh_A07G0143:0.0041460700)97:0.0022259329)50:0.0000020375,Cotton_A_05673:0.0022484570)100:0.6225343886,(((((Gh_A08G0982:0.1157153702,GOBAR_AA08909:0.0012034384)90:0.0013072654,Cotton_A_31123:0.0674674110)97:0.0090499173,(Gorai.004G137300:0.0011569951,Gh_D08G1257:0.0035630561)100:0.0103052432)100:0.1053336986,(((Gh_A12G2669:0.0011375809,GOBAR_AA23701:0.0011414535)100:0.0017566339,Cotton_A_23171:0.0012703139)98:0.0046635977,(Gorai.008G250500:0.0011399415,Gh_D12G2750:0.0045812201)99:0.0039486172)100:0.0635562643)85:0.0157139302,((Gh_A02G1791:0.0000024274,(Cotton_A_38536:0.0011470783,GOBAR_AA24991:0.0000024274)100:0.0011470877)99:0.0023033662,(Gorai.003G085100:0.0034617719,Gh_D03G0688:0.0107350137)80:0.0011462291)95:0.0260912686)100:0.2536976700)100:0.1405046783,(((Gorai.007G299500:0.0063484665,(Gh_D11G2743:0.0000024274,GOBAR_DD12974:0.0000024274)45:0.0000024274)96:0.0013656522,((Gh_A11G2426:0.0012713051,GOBAR_AA19255:0.0000024274)97:0.0050971905,Cotton_A_29320:0.0000024274)89:0.0011740589)100:0.2391699525,(((((Gorai.002G128200:0.0382565667,(Gh_D01G0990:0.0036094707,GOBAR_DD22521:0.0070376333)92:0.0038482431)92:0.0077283064,((GOBAR_AA29299:0.0047992123,Gh_A01G0943:0.0012775485)90:0.0011978145,Cotton_A_33534:0.0035171424)100:0.0087515113)100:0.0917252627,((Gh_A05G2211:0.0109060508,Cotton_A_18772:0.0173798153)51:0.0015275903,(Gh_D05G2471:0.0034321853,Gorai.009G273400:0.0045705896)46:0.0008450257)100:0.0530549527)81:0.0153934107,((Gh_D05G1864:0.0170280846,Gorai.009G202500:0.0045508684)100:0.0076053368,(GOBAR_AA06210:0.0048289412,(Cotton_A_13752:0.0000024274,Gh_A05G1666:0.0099133811)100:0.0089223446)70:0.0067660705)100:0.0560509755)100:0.1249960595,((((((Gh_A03G0476:0.0241870084,Cotton_A_16216:0.0011531794)99:0.0117689511,GOBAR_AA01568:0.0000024305)67:0.0091153638,(Gh_D03G1062:0.0023240142,GOBAR_DD02070:0.0011651704)100:0.0014712620)69:0.0067000208,Gorai.003G117900:0.0076026440)100:0.1083790445,(((Gorai.008G212100:0.0353264227,Gh_D12G1932:0.0028680855)54:0.0019530199,GOBAR_DD20994:0.0192904090)88:0.0009750550,(GOBAR_AA11222:0.0025908393,(Cotton_A_07974:0.0011500464,Gh_A12G1774:0.0000025993)90:0.0039937141)68:0.0040900151)100:0.1062611599)89:0.0257760641,(((Cotton_A_03631:0.0012022865,Gh_A07G0398:0.0011955239)61:0.0000020723,GOBAR_AA28632:0.0025218599)99:0.0102494536,(Gorai.001G053300:0.0023233273,(GOBAR_DD31632:0.0024058336,Gh_D07G0463:0.0012020603)100:0.0025017289)100:0.0274721650)100:0.0789525554)100:0.2192267131)100:0.1122290785)100:0.3729820844)93:0.0935098155)100:0.9694093207)43:0.0000029640,Gh_D07G0928:0.0026623218)99:0.0103578929)99:0.0214221250); TIME STAMP ---------- Date and time: Wed Jul 10 10:05:43 2019 Total CPU time used: 1639.494759 seconds (0h:27m:19s) Total wall-clock time used: 1641.833724 seconds (0h:27m:21s)