IQ-TREE 1.6.11 built Jun 6 2019 Input file name: /tmp/IQTREE/gxwIB6D6Zc/seqin.fst Type of analysis: ModelFinder + tree reconstruction + ultrafast bootstrap (1000 replicates) Random seed number: 875789 REFERENCES ---------- To cite ModelFinder please use: Subha Kalyaanamoorthy, Bui Quang Minh, Thomas KF Wong, Arndt von Haeseler, and Lars S Jermiin (2017) ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods, 14:587–589. https://doi.org/10.1038/nmeth.4285 To cite IQ-TREE please use: Lam-Tung Nguyen, Heiko A. Schmidt, Arndt von Haeseler, and Bui Quang Minh (2015) IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Mol Biol Evol, 32:268-274. https://doi.org/10.1093/molbev/msu300 Since you used ultrafast bootstrap (UFBoot) please also cite: Diep Thi Hoang, Olga Chernomor, Arndt von Haeseler, Bui Quang Minh, and Le Sy Vinh (2017) UFBoot2: Improving the ultrafast bootstrap approximation. Mol Biol Evol, in press. https://doi.org/10.1093/molbev/msx281 SEQUENCE ALIGNMENT ------------------ Input data: 138 sequences with 2308 amino-acid sites Number of constant sites: 1039 (= 45.0173% of all sites) Number of invariant (constant or ambiguous constant) sites: 1039 (= 45.0173% of all sites) Number of parsimony informative sites: 921 Number of distinct site patterns: 1508 ModelFinder ----------- Best-fit model according to BIC: JTT+R7 List of models sorted by BIC scores: Model LogL AIC w-AIC AICc w-AICc BIC w-BIC JTT+R7 -70044.7330 140659.4660 - 0.0000 140740.0892 - 0.0000 142296.5450 + 0.5277 JTT+R8 -70037.1045 140648.2090 - 0.0000 140730.0466 - 0.0000 142296.7762 + 0.4700 JTT+R6 -70057.9049 140681.8097 - 0.0000 140761.2287 - 0.0000 142307.4004 - 0.0023 JTT+F+R7 -69989.2418 140586.4836 - 0.0045 140679.0647 - 0.0087 142332.7011 - 0.0000 JTT+F+R8 -69981.8516 140575.7032 + 0.9955 140669.5982 + 0.9913 142333.4090 - 0.0000 JTTDCMut+R8 -70055.8968 140685.7937 - 0.0000 140767.6313 - 0.0000 142334.3609 - 0.0000 JTTDCMut+R9 -70048.9808 140675.9616 - 0.0000 140759.0240 - 0.0000 142336.0170 - 0.0000 JTT+R5 -70079.9857 140721.9714 - 0.0000 140800.1964 - 0.0000 142336.0738 - 0.0000 JTTDCMut+R7 -70065.2775 140700.5549 - 0.0000 140781.1781 - 0.0000 142337.6339 - 0.0000 JTT+F+R6 -70001.8518 140607.7036 - 0.0000 140698.9814 - 0.0000 142342.4329 - 0.0000 JTTDCMut+R6 -70078.9685 140723.9370 - 0.0000 140803.3560 - 0.0000 142349.5277 - 0.0000 JTT+I+G4 -70110.0403 140770.0805 - 0.0000 140844.7852 - 0.0000 142349.7181 - 0.0000 JTTDCMut+R5 -70091.8641 140745.7282 - 0.0000 140823.9533 - 0.0000 142359.8306 - 0.0000 JTT+F+R5 -70023.6414 140647.2828 - 0.0000 140737.2679 - 0.0000 142370.5238 - 0.0000 JTTDCMut+F+R8 -70000.9390 140613.8781 - 0.0000 140707.7731 - 0.0000 142371.5839 - 0.0000 JTTDCMut+F+R7 -70009.8940 140627.7879 - 0.0000 140720.3690 - 0.0000 142374.0055 - 0.0000 JTTDCMut+F+R9 -69994.5048 140605.0095 - 0.0000 140700.2291 - 0.0000 142374.2036 - 0.0000 JTT+F+I+G4 -70052.3310 140692.6620 - 0.0000 140778.8319 - 0.0000 142381.4381 - 0.0000 JTTDCMut+I+G4 -70127.1503 140804.3005 - 0.0000 140879.0052 - 0.0000 142383.9381 - 0.0000 JTTDCMut+F+R6 -70023.2744 140650.5488 - 0.0000 140741.8266 - 0.0000 142385.2781 - 0.0000 JTT+R4 -70113.0596 140784.1191 - 0.0000 140861.1605 - 0.0000 142386.7332 - 0.0000 JTTDCMut+F+R5 -70036.3068 140672.6135 - 0.0000 140762.5986 - 0.0000 142395.8545 - 0.0000 JTT+G4 -70137.0573 140822.1146 - 0.0000 140896.2415 - 0.0000 142396.0080 - 0.0000 JTT+F+R4 -70048.9074 140693.8148 - 0.0000 140782.5177 - 0.0000 142405.5675 - 0.0000 JTTDCMut+R4 -70126.0255 140810.0510 - 0.0000 140887.0924 - 0.0000 142412.6651 - 0.0000 JTTDCMut+F+I+G4 -70069.7790 140727.5580 - 0.0000 140813.7279 - 0.0000 142416.3342 - 0.0000 JTT+F+G4 -70078.9263 140743.8525 - 0.0000 140829.3957 - 0.0000 142426.8845 - 0.0000 JTTDCMut+G4 -70154.9992 140857.9983 - 0.0000 140932.1252 - 0.0000 142431.8918 - 0.0000 JTTDCMut+F+R4 -70066.5889 140729.1778 - 0.0000 140817.8806 - 0.0000 142440.9305 - 0.0000 JTTDCMut+F+G4 -70096.7661 140779.5322 - 0.0000 140865.0754 - 0.0000 142462.5643 - 0.0000 JTT+R3 -70251.5686 141057.1372 - 0.0000 141133.0051 - 0.0000 142648.2630 - 0.0000 JTT+F+R3 -70194.5377 140981.0754 - 0.0000 141068.5065 - 0.0000 142681.3398 - 0.0000 JTTDCMut+R3 -70269.3981 141092.7963 - 0.0000 141168.6643 - 0.0000 142683.9221 - 0.0000 JTTDCMut+F+R3 -70212.6980 141017.3960 - 0.0000 141104.8271 - 0.0000 142717.6604 - 0.0000 VT+R7 -70374.5126 141319.0252 - 0.0000 141399.6483 - 0.0000 142956.1041 - 0.0000 VT+R8 -70368.5215 141311.0430 - 0.0000 141392.8806 - 0.0000 142959.6102 - 0.0000 VT+R6 -70384.9535 141335.9070 - 0.0000 141415.3260 - 0.0000 142961.4977 - 0.0000 VT+R5 -70398.0682 141358.1364 - 0.0000 141436.3614 - 0.0000 142972.2388 - 0.0000 VT+I+G4 -70431.4486 141412.8972 - 0.0000 141487.6020 - 0.0000 142992.5348 - 0.0000 WAG+R7 -70395.8982 141361.7963 - 0.0000 141442.4195 - 0.0000 142998.8753 - 0.0000 WAG+R8 -70389.5200 141353.0399 - 0.0000 141434.8776 - 0.0000 143001.6072 - 0.0000 WAG+R6 -70408.2687 141382.5374 - 0.0000 141461.9564 - 0.0000 143008.1281 - 0.0000 VT+R4 -70428.0185 141414.0370 - 0.0000 141491.0785 - 0.0000 143016.6512 - 0.0000 WAG+R5 -70426.8850 141415.7700 - 0.0000 141493.9951 - 0.0000 143029.8724 - 0.0000 VT+F+R7 -70340.7424 141289.4849 - 0.0000 141382.0660 - 0.0000 143035.7024 - 0.0000 WAG+I+G4 -70453.9565 141457.9131 - 0.0000 141532.6178 - 0.0000 143037.5507 - 0.0000 VT+F+R8 -70334.9616 141281.9231 - 0.0000 141375.8182 - 0.0000 143039.6289 - 0.0000 VT+F+R6 -70350.6734 141305.3468 - 0.0000 141396.6246 - 0.0000 143040.0760 - 0.0000 VT+G4 -70460.9673 141469.9346 - 0.0000 141544.0615 - 0.0000 143043.8280 - 0.0000 VT+F+R5 -70362.9385 141325.8770 - 0.0000 141415.8621 - 0.0000 143049.1180 - 0.0000 VT+F+I+G4 -70396.4479 141380.8957 - 0.0000 141467.0656 - 0.0000 143069.6719 - 0.0000 WAG+R4 -70459.1039 141476.2077 - 0.0000 141553.2492 - 0.0000 143078.8219 - 0.0000 WAG+F+R7 -70362.5671 141333.1343 - 0.0000 141425.7154 - 0.0000 143079.3518 - 0.0000 WAG+F+R8 -70356.6339 141325.2678 - 0.0000 141419.1629 - 0.0000 143082.9736 - 0.0000 WAG+F+R6 -70374.4585 141352.9169 - 0.0000 141444.1947 - 0.0000 143087.6462 - 0.0000 WAG+G4 -70483.2142 141514.4284 - 0.0000 141588.5553 - 0.0000 143088.3218 - 0.0000 VT+F+R4 -70392.0315 141380.0631 - 0.0000 141468.7659 - 0.0000 143091.8158 - 0.0000 WAG+F+R5 -70392.8939 141385.7879 - 0.0000 141475.7729 - 0.0000 143109.0288 - 0.0000 VT+F+G4 -70425.3885 141436.7770 - 0.0000 141522.3202 - 0.0000 143119.8091 - 0.0000 WAG+F+I+G4 -70422.2047 141432.4093 - 0.0000 141518.5792 - 0.0000 143121.1855 - 0.0000 WAG+F+R4 -70425.8273 141447.6546 - 0.0000 141536.3574 - 0.0000 143159.4073 - 0.0000 WAG+F+G4 -70449.6613 141485.3225 - 0.0000 141570.8657 - 0.0000 143168.3546 - 0.0000 LG+F+R9 -70450.3115 141516.6231 - 0.0000 141611.8427 - 0.0000 143285.8172 - 0.0000 VT+R3 -70571.2324 141696.4648 - 0.0000 141772.3328 - 0.0000 143287.5907 - 0.0000 LG+F+R8 -70459.0583 141530.1166 - 0.0000 141624.0117 - 0.0000 143287.8224 - 0.0000 LG+F+R10 -70444.9877 141509.9753 - 0.0000 141606.5302 - 0.0000 143290.6577 - 0.0000 LG+F+R7 -70469.3463 141546.6925 - 0.0000 141639.2736 - 0.0000 143292.9101 - 0.0000 LG+F+R6 -70484.2890 141572.5780 - 0.0000 141663.8558 - 0.0000 143307.3072 - 0.0000 LG+F+R5 -70500.2973 141600.5945 - 0.0000 141690.5796 - 0.0000 143323.8355 - 0.0000 LG+F+I+G4 -70524.8327 141637.6654 - 0.0000 141723.8353 - 0.0000 143326.4415 - 0.0000 LG+F+G4 -70547.0959 141680.1918 - 0.0000 141765.7350 - 0.0000 143363.2239 - 0.0000 VT+F+R3 -70537.2679 141666.5357 - 0.0000 141753.9669 - 0.0000 143366.8002 - 0.0000 LG+R9 -70566.5785 141711.1570 - 0.0000 141794.2194 - 0.0000 143371.2125 - 0.0000 LG+R8 -70575.1917 141724.3834 - 0.0000 141806.2210 - 0.0000 143372.9506 - 0.0000 LG+F+R4 -70532.7087 141661.4174 - 0.0000 141750.1203 - 0.0000 143373.1702 - 0.0000 LG+R10 -70561.2087 141704.4173 - 0.0000 141788.7150 - 0.0000 143375.9611 - 0.0000 LG+R7 -70585.6574 141741.3148 - 0.0000 141821.9379 - 0.0000 143378.3937 - 0.0000 WAG+R3 -70620.0048 141794.0096 - 0.0000 141869.8776 - 0.0000 143385.1355 - 0.0000 LG+R6 -70600.4631 141766.9262 - 0.0000 141846.3452 - 0.0000 143392.5169 - 0.0000 LG+R5 -70616.2183 141794.4367 - 0.0000 141872.6617 - 0.0000 143408.5391 - 0.0000 LG+I+G4 -70644.0392 141838.0784 - 0.0000 141912.7831 - 0.0000 143417.7160 - 0.0000 LG+G4 -70665.7794 141879.5588 - 0.0000 141953.6857 - 0.0000 143453.4522 - 0.0000 LG+R4 -70650.0194 141858.0388 - 0.0000 141935.0802 - 0.0000 143460.6529 - 0.0000 WAG+F+R3 -70585.5836 141763.1671 - 0.0000 141850.5982 - 0.0000 143463.4316 - 0.0000 Dayhoff+F+R8 -70649.4860 141910.9719 - 0.0000 142004.8670 - 0.0000 143668.6777 - 0.0000 Dayhoff+F+R7 -70658.8251 141925.6502 - 0.0000 142018.2313 - 0.0000 143671.8677 - 0.0000 Dayhoff+F+R9 -70643.4273 141902.8546 - 0.0000 141998.0742 - 0.0000 143672.0487 - 0.0000 DCMut+F+R9 -70647.0302 141910.0604 - 0.0000 142005.2800 - 0.0000 143679.2544 - 0.0000 DCMut+F+R8 -70654.9140 141921.8279 - 0.0000 142015.7230 - 0.0000 143679.5337 - 0.0000 Dayhoff+F+R6 -70672.6050 141949.2101 - 0.0000 142040.4879 - 0.0000 143683.9393 - 0.0000 DCMut+F+R7 -70665.4509 141938.9018 - 0.0000 142031.4830 - 0.0000 143685.1194 - 0.0000 DCMut+F+R10 -70642.5600 141905.1200 - 0.0000 142001.6748 - 0.0000 143685.8023 - 0.0000 LG+F+R3 -70697.2134 141986.4269 - 0.0000 142073.8580 - 0.0000 143686.6913 - 0.0000 DCMut+F+R6 -70680.4750 141964.9499 - 0.0000 142056.2277 - 0.0000 143699.6792 - 0.0000 Dayhoff+F+I+G4 -70713.1196 142014.2391 - 0.0000 142100.4090 - 0.0000 143703.0153 - 0.0000 DCMut+F+I+G4 -70716.5247 142021.0494 - 0.0000 142107.2193 - 0.0000 143709.8255 - 0.0000 DCMut+F+R5 -70696.0256 141992.0512 - 0.0000 142082.0362 - 0.0000 143715.2922 - 0.0000 Dayhoff+F+R5 -70700.5137 142001.0273 - 0.0000 142091.0124 - 0.0000 143724.2683 - 0.0000 cpREV+R8 -70753.5449 142081.0897 - 0.0000 142162.9273 - 0.0000 143729.6569 - 0.0000 cpREV+R9 -70746.9561 142071.9122 - 0.0000 142154.9746 - 0.0000 143731.9677 - 0.0000 cpREV+R7 -70765.7090 142101.4180 - 0.0000 142182.0411 - 0.0000 143738.4969 - 0.0000 DCMut+F+R4 -70724.5966 142045.1932 - 0.0000 142133.8961 - 0.0000 143756.9460 - 0.0000 Dayhoff+F+G4 -70744.5414 142075.0828 - 0.0000 142160.6260 - 0.0000 143758.1148 - 0.0000 cpREV+R6 -70784.9282 142135.8565 - 0.0000 142215.2754 - 0.0000 143761.4471 - 0.0000 LG+R3 -70808.4694 142170.9388 - 0.0000 142246.8068 - 0.0000 143762.0647 - 0.0000 DCMut+F+G4 -70748.2013 142082.4027 - 0.0000 142167.9459 - 0.0000 143765.4347 - 0.0000 mtInv+F+R8 -70704.8819 142021.7638 - 0.0000 142115.6589 - 0.0000 143779.4696 - 0.0000 mtInv+F+R9 -70697.2488 142010.4976 - 0.0000 142105.7172 - 0.0000 143779.6917 - 0.0000 mtInv+F+R7 -70715.1306 142038.2612 - 0.0000 142130.8423 - 0.0000 143784.4788 - 0.0000 mtInv+F+R6 -70731.8879 142067.7758 - 0.0000 142159.0536 - 0.0000 143802.5051 - 0.0000 cpREV+R5 -70814.2420 142190.4839 - 0.0000 142268.7090 - 0.0000 143804.5863 - 0.0000 cpREV+I+G4 -70838.0107 142226.0213 - 0.0000 142300.7260 - 0.0000 143805.6589 - 0.0000 mtInv+F+R5 -70743.1770 142086.3540 - 0.0000 142176.3390 - 0.0000 143809.5949 - 0.0000 Dayhoff+F+R4 -70752.4405 142100.8809 - 0.0000 142189.5838 - 0.0000 143812.6336 - 0.0000 mtInv+F+I+G4 -70774.6326 142137.2652 - 0.0000 142223.4351 - 0.0000 143826.0414 - 0.0000 JTT+R2 -70851.5820 142253.1641 - 0.0000 142327.8688 - 0.0000 143832.8017 - 0.0000 cpREV+G4 -70866.9401 142281.8803 - 0.0000 142356.0072 - 0.0000 143855.7737 - 0.0000 mtInv+F+G4 -70798.4703 142182.9406 - 0.0000 142268.4838 - 0.0000 143865.9727 - 0.0000 JTTDCMut+R2 -70868.6500 142287.3001 - 0.0000 142362.0048 - 0.0000 143866.9376 - 0.0000 cpREV+R4 -70853.6972 142265.3943 - 0.0000 142342.4358 - 0.0000 143868.0085 - 0.0000 JTT+F+R2 -70798.0686 142184.1372 - 0.0000 142270.3071 - 0.0000 143872.9133 - 0.0000 mtInv+F+R4 -70787.7593 142171.5186 - 0.0000 142260.2215 - 0.0000 143883.2714 - 0.0000 cpREV+F+R8 -70760.2818 142132.5635 - 0.0000 142226.4586 - 0.0000 143890.2693 - 0.0000 cpREV+F+R9 -70753.3460 142122.6919 - 0.0000 142217.9115 - 0.0000 143891.8860 - 0.0000 cpREV+F+R7 -70772.7864 142153.5728 - 0.0000 142246.1539 - 0.0000 143899.7903 - 0.0000 JTTDCMut+F+R2 -70817.2165 142222.4330 - 0.0000 142308.6029 - 0.0000 143911.2092 - 0.0000 cpREV+F+R6 -70792.0202 142188.0405 - 0.0000 142279.3183 - 0.0000 143922.7697 - 0.0000 cpREV+F+I+G4 -70840.1518 142268.3035 - 0.0000 142354.4734 - 0.0000 143957.0797 - 0.0000 cpREV+F+R5 -70820.7262 142241.4524 - 0.0000 142331.4375 - 0.0000 143964.6934 - 0.0000 cpREV+F+G4 -70868.3234 142322.6468 - 0.0000 142408.1900 - 0.0000 144005.6789 - 0.0000 cpREV+F+R4 -70855.9608 142307.9216 - 0.0000 142396.6245 - 0.0000 144019.6744 - 0.0000 Dayhoff+R8 -70899.0230 142372.0459 - 0.0000 142453.8836 - 0.0000 144020.6132 - 0.0000 Dayhoff+R9 -70892.3939 142362.7878 - 0.0000 142445.8502 - 0.0000 144022.8433 - 0.0000 Dayhoff+R7 -70909.0241 142388.0483 - 0.0000 142468.6714 - 0.0000 144025.1272 - 0.0000 DCMut+R9 -70896.3018 142370.6036 - 0.0000 142453.6660 - 0.0000 144030.6591 - 0.0000 DCMut+R8 -70905.0696 142384.1392 - 0.0000 142465.9768 - 0.0000 144032.7064 - 0.0000 DCMut+R10 -70891.0510 142364.1021 - 0.0000 142448.3997 - 0.0000 144035.6458 - 0.0000 DCMut+R7 -70916.0514 142402.1029 - 0.0000 142482.7260 - 0.0000 144039.1818 - 0.0000 Dayhoff+R6 -70923.9369 142413.8739 - 0.0000 142493.2928 - 0.0000 144039.4645 - 0.0000 DCMut+R6 -70930.8417 142427.6833 - 0.0000 142507.1023 - 0.0000 144053.2740 - 0.0000 Dayhoff+I+G4 -70963.8084 142477.6168 - 0.0000 142552.3215 - 0.0000 144057.2544 - 0.0000 DCMut+I+G4 -70966.6477 142483.2954 - 0.0000 142558.0001 - 0.0000 144062.9330 - 0.0000 DCMut+R5 -70946.0907 142454.1814 - 0.0000 142532.4064 - 0.0000 144068.2838 - 0.0000 Dayhoff+R5 -70951.3101 142464.6203 - 0.0000 142542.8454 - 0.0000 144078.7227 - 0.0000 Dayhoff+F+R3 -70900.8169 142393.6337 - 0.0000 142481.0649 - 0.0000 144093.8982 - 0.0000 DCMut+F+R3 -70901.7335 142395.4669 - 0.0000 142482.8981 - 0.0000 144095.7314 - 0.0000 DCMut+R4 -70973.6146 142505.2291 - 0.0000 142582.2706 - 0.0000 144107.8433 - 0.0000 Dayhoff+G4 -70996.4213 142540.8426 - 0.0000 142614.9695 - 0.0000 144114.7361 - 0.0000 DCMut+G4 -70999.5525 142547.1049 - 0.0000 142621.2318 - 0.0000 144120.9983 - 0.0000 PMB+R7 -70984.8890 142539.7780 - 0.0000 142620.4011 - 0.0000 144176.8569 - 0.0000 PMB+R8 -70978.6681 142531.3361 - 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0.0000 144943.9774 - 0.0000 HIVb+F+I+G4 -71337.6741 143263.3481 - 0.0000 143349.5180 - 0.0000 144952.1243 - 0.0000 HIVb+F+R5 -71321.1429 143242.2857 - 0.0000 143332.2708 - 0.0000 144965.5267 - 0.0000 mtMet+F+R3 -71342.0022 143276.0045 - 0.0000 143363.4356 - 0.0000 144976.2689 - 0.0000 FLU+F+R9 -71295.8686 143207.7371 - 0.0000 143302.9567 - 0.0000 144976.9312 - 0.0000 FLU+F+R10 -71290.0026 143200.0052 - 0.0000 143296.5600 - 0.0000 144980.6875 - 0.0000 FLU+F+R8 -71305.8735 143223.7470 - 0.0000 143317.6421 - 0.0000 144981.4528 - 0.0000 LG+F+R2 -71357.1017 143302.2035 - 0.0000 143388.3734 - 0.0000 144990.9796 - 0.0000 FLU+F+R7 -71321.3384 143250.6768 - 0.0000 143343.2579 - 0.0000 144996.8944 - 0.0000 HIVb+F+G4 -71373.4076 143332.8152 - 0.0000 143418.3584 - 0.0000 145015.8473 - 0.0000 HIVb+F+R4 -71358.0154 143312.0307 - 0.0000 143400.7335 - 0.0000 145023.7834 - 0.0000 FLU+R9 -71393.9272 143365.8543 - 0.0000 143448.9168 - 0.0000 145025.9098 - 0.0000 FLU+R10 -71387.9905 143357.9810 - 0.0000 143442.2786 - 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0.0000 FLU+R4 -71524.5853 143607.1706 - 0.0000 143684.2120 - 0.0000 145209.7847 - 0.0000 rtREV+R8 -71512.3993 143598.7986 - 0.0000 143680.6362 - 0.0000 145247.3658 - 0.0000 rtREV+R7 -71520.5791 143611.1582 - 0.0000 143691.7814 - 0.0000 145248.2372 - 0.0000 rtREV+R9 -71508.2819 143594.5639 - 0.0000 143677.6263 - 0.0000 145254.6193 - 0.0000 rtREV+R6 -71535.6555 143637.3110 - 0.0000 143716.7300 - 0.0000 145262.9017 - 0.0000 Dayhoff+F+R2 -71503.1032 143594.2063 - 0.0000 143680.3762 - 0.0000 145282.9825 - 0.0000 DCMut+F+R2 -71505.3949 143598.7898 - 0.0000 143684.9597 - 0.0000 145287.5659 - 0.0000 rtREV+R5 -71559.6549 143681.3097 - 0.0000 143759.5348 - 0.0000 145295.4121 - 0.0000 rtREV+I+G4 -71586.4229 143722.8458 - 0.0000 143797.5506 - 0.0000 145302.4834 - 0.0000 cpREV+R2 -71603.1414 143756.2828 - 0.0000 143830.9875 - 0.0000 145335.9204 - 0.0000 rtREV+R4 -71589.9270 143737.8541 - 0.0000 143814.8955 - 0.0000 145340.4682 - 0.0000 rtREV+G4 -71610.5645 143769.1291 - 0.0000 143843.2560 - 0.0000 145343.0225 - 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0.0000 145878.2890 - 0.0000 mtREV+F+G4 -71810.5152 144207.0304 - 0.0000 144292.5736 - 0.0000 145890.0624 - 0.0000 mtREV+F+R5 -71785.7731 144171.5462 - 0.0000 144261.5313 - 0.0000 145894.7872 - 0.0000 mtREV+F+R4 -71809.6065 144215.2129 - 0.0000 144303.9157 - 0.0000 145926.9656 - 0.0000 Blosum62+F+R2 -71827.2789 144242.5578 - 0.0000 144328.7277 - 0.0000 145931.3340 - 0.0000 rtREV+F+R2 -71873.3660 144334.7320 - 0.0000 144420.9019 - 0.0000 146023.5081 - 0.0000 mtZOA+F+R3 -71890.3498 144372.6996 - 0.0000 144460.1308 - 0.0000 146072.9641 - 0.0000 mtREV+F+R3 -71993.3252 144578.6504 - 0.0000 144666.0815 - 0.0000 146278.9148 - 0.0000 mtVer+F+R10 -71984.9286 144589.8572 - 0.0000 144686.4121 - 0.0000 146370.5396 - 0.0000 mtVer+F+R9 -71997.3441 144610.6881 - 0.0000 144705.9077 - 0.0000 146379.8822 - 0.0000 mtVer+F+R8 -72011.8318 144635.6636 - 0.0000 144729.5586 - 0.0000 146393.3694 - 0.0000 mtVer+F+R7 -72029.2103 144666.4205 - 0.0000 144759.0017 - 0.0000 146412.6381 - 0.0000 mtVer+F+I+G4 -72080.5826 144749.1652 - 0.0000 144835.3351 - 0.0000 146437.9414 - 0.0000 mtVer+F+R6 -72055.5760 144715.1519 - 0.0000 144806.4297 - 0.0000 146449.8812 - 0.0000 mtVer+F+R5 -72073.3284 144746.6568 - 0.0000 144836.6418 - 0.0000 146469.8978 - 0.0000 mtMet+F+R2 -72096.8886 144781.7773 - 0.0000 144867.9472 - 0.0000 146470.5534 - 0.0000 mtVer+F+G4 -72111.8847 144809.7695 - 0.0000 144895.3127 - 0.0000 146492.8015 - 0.0000 mtVer+F+R4 -72116.2911 144828.5822 - 0.0000 144917.2850 - 0.0000 146540.3349 - 0.0000 rtREV+R2 -72376.0033 145302.0067 - 0.0000 145376.7114 - 0.0000 146881.6443 - 0.0000 mtVer+F+R3 -72309.8286 145211.6573 - 0.0000 145299.0884 - 0.0000 146911.9217 - 0.0000 HIVb+F+R2 -72334.2807 145256.5615 - 0.0000 145342.7314 - 0.0000 146945.3376 - 0.0000 FLU+F+R2 -72365.4054 145318.8107 - 0.0000 145404.9806 - 0.0000 147007.5869 - 0.0000 FLU+R2 -72473.4173 145496.8346 - 0.0000 145571.5393 - 0.0000 147076.4722 - 0.0000 HIVb+R2 -72627.4522 145804.9044 - 0.0000 145879.6091 - 0.0000 147384.5420 - 0.0000 mtZOA+F+R2 -72731.2336 146050.4672 - 0.0000 146136.6371 - 0.0000 147739.2433 - 0.0000 mtREV+F+R2 -72781.0185 146150.0371 - 0.0000 146236.2070 - 0.0000 147838.8132 - 0.0000 HIVw+F+R9 -72797.6246 146211.2493 - 0.0000 146306.4689 - 0.0000 147980.4434 - 0.0000 HIVw+F+R10 -72791.0416 146202.0832 - 0.0000 146298.6381 - 0.0000 147982.7656 - 0.0000 HIVw+F+R8 -72808.7944 146229.5888 - 0.0000 146323.4839 - 0.0000 147987.2946 - 0.0000 HIVw+F+R7 -72824.6818 146257.3636 - 0.0000 146349.9447 - 0.0000 148003.5811 - 0.0000 HIVw+F+R6 -72848.5120 146301.0240 - 0.0000 146392.3018 - 0.0000 148035.7533 - 0.0000 HIVw+F+I+G4 -72889.8466 146367.6931 - 0.0000 146453.8630 - 0.0000 148056.4693 - 0.0000 HIVw+F+R5 -72869.4789 146338.9578 - 0.0000 146428.9429 - 0.0000 148062.1988 - 0.0000 HIVw+F+G4 -72941.1516 146468.3033 - 0.0000 146553.8465 - 0.0000 148151.3353 - 0.0000 HIVw+F+R4 -72928.0065 146452.0130 - 0.0000 146540.7159 - 0.0000 148163.7658 - 0.0000 mtART+F+R10 -72993.1541 146606.3081 - 0.0000 146702.8630 - 0.0000 148386.9905 - 0.0000 mtART+F+R9 -73009.3585 146634.7170 - 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0.0000 148253.9588 - 0.0000 149820.6884 - 0.0000 HIVw+R7 -73817.2303 148204.4606 - 0.0000 148285.0838 - 0.0000 149841.5396 - 0.0000 mtMet+R3 -73853.6220 148261.2440 - 0.0000 148337.1120 - 0.0000 149852.3699 - 0.0000 mtInv+R8 -73817.0837 148208.1674 - 0.0000 148290.0050 - 0.0000 149856.7346 - 0.0000 mtInv+R9 -73809.7612 148197.5224 - 0.0000 148280.5849 - 0.0000 149857.5779 - 0.0000 mtInv+R7 -73827.7079 148225.4159 - 0.0000 148306.0390 - 0.0000 149862.4948 - 0.0000 HIVw+R6 -73843.8326 148253.6652 - 0.0000 148333.0842 - 0.0000 149879.2559 - 0.0000 mtInv+R6 -73846.0327 148258.0654 - 0.0000 148337.4844 - 0.0000 149883.6561 - 0.0000 HIVw+I+G4 -73880.9205 148311.8411 - 0.0000 148386.5458 - 0.0000 149891.4786 - 0.0000 mtInv+R5 -73859.7995 148281.5990 - 0.0000 148359.8241 - 0.0000 149895.7014 - 0.0000 HIVw+R5 -73867.8512 148297.7024 - 0.0000 148375.9275 - 0.0000 149911.8048 - 0.0000 mtInv+I+G4 -73902.3894 148354.7788 - 0.0000 148429.4835 - 0.0000 149934.4164 - 0.0000 mtInv+R4 -73901.6592 148361.3185 - 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0.0000 149077.8948 - 0.0000 150644.6244 - 0.0000 JTTDCMut -74278.4644 149102.9289 - 0.0000 149176.4805 - 0.0000 150671.0782 - 0.0000 mtREV+R7 -74233.0445 149036.0889 - 0.0000 149116.7120 - 0.0000 150673.1678 - 0.0000 mtREV+R6 -74264.5786 149095.1573 - 0.0000 149174.5763 - 0.0000 150720.7479 - 0.0000 mtREV+I+G4 -74298.3492 149146.6984 - 0.0000 149221.4031 - 0.0000 150726.3359 - 0.0000 mtREV+G4 -74326.4740 149200.9479 - 0.0000 149275.0748 - 0.0000 150774.8414 - 0.0000 JTT+F -74263.7505 149111.5010 - 0.0000 149196.4201 - 0.0000 150788.7889 - 0.0000 mtREV+R5 -74307.4104 149176.8208 - 0.0000 149255.0459 - 0.0000 150790.9232 - 0.0000 VT -74348.8152 149243.6305 - 0.0000 149317.1821 - 0.0000 150811.7798 - 0.0000 mtREV+R4 -74326.7934 149211.5867 - 0.0000 149288.6281 - 0.0000 150814.2008 - 0.0000 JTTDCMut+F -74284.6177 149153.2354 - 0.0000 149238.1545 - 0.0000 150830.5233 - 0.0000 cpREV+I -74358.2280 149264.4560 - 0.0000 149338.5829 - 0.0000 150838.3495 - 0.0000 DCMut+F+I -74322.8320 149231.6640 - 0.0000 149317.2072 - 0.0000 150914.6960 - 0.0000 Dayhoff+F+I -74323.0225 149232.0451 - 0.0000 149317.5883 - 0.0000 150915.0771 - 0.0000 WAG -74431.8188 149409.6377 - 0.0000 149483.1893 - 0.0000 150977.7870 - 0.0000 VT+F -74358.5034 149301.0068 - 0.0000 149385.9259 - 0.0000 150978.2947 - 0.0000 PMB+I -74444.1515 149436.3030 - 0.0000 149510.4299 - 0.0000 151010.1965 - 0.0000 cpREV+F+I -74388.7614 149363.5227 - 0.0000 149449.0659 - 0.0000 151046.5548 - 0.0000 DCMut+I -74472.4458 149492.8916 - 0.0000 149567.0185 - 0.0000 151066.7851 - 0.0000 Dayhoff+I -74473.5026 149495.0053 - 0.0000 149569.1322 - 0.0000 151068.8987 - 0.0000 mtART+F+R2 -74409.2713 149406.5427 - 0.0000 149492.7126 - 0.0000 151095.3188 - 0.0000 LG+I -74486.9032 149521.8065 - 0.0000 149595.9334 - 0.0000 151095.6999 - 0.0000 mtVer+R10 -74429.4099 149440.8197 - 0.0000 149525.1174 - 0.0000 151112.3635 - 0.0000 mtVer+R9 -74438.7954 149455.5908 - 0.0000 149538.6533 - 0.0000 151115.6463 - 0.0000 mtVer+R8 -74452.8443 149479.6887 - 0.0000 149561.5263 - 0.0000 151128.2559 - 0.0000 LG+F+I -74434.1523 149454.3047 - 0.0000 149539.8479 - 0.0000 151137.3367 - 0.0000 mtVer+R7 -74472.2940 149514.5881 - 0.0000 149595.2112 - 0.0000 151151.6670 - 0.0000 mtVer+R6 -74505.9125 149577.8251 - 0.0000 149657.2441 - 0.0000 151203.4157 - 0.0000 mtVer+I+G4 -74545.9076 149641.8152 - 0.0000 149716.5200 - 0.0000 151221.4528 - 0.0000 mtVer+R5 -74528.1693 149618.3386 - 0.0000 149696.5637 - 0.0000 151232.4410 - 0.0000 PMB+F+I -74482.0272 149550.0543 - 0.0000 149635.5975 - 0.0000 151233.0864 - 0.0000 mtVer+G4 -74561.8655 149671.7310 - 0.0000 149745.8579 - 0.0000 151245.6244 - 0.0000 Blosum62+I -74562.7528 149673.5056 - 0.0000 149747.6325 - 0.0000 151247.3991 - 0.0000 WAG+F -74496.8044 149577.6089 - 0.0000 149662.5280 - 0.0000 151254.8968 - 0.0000 mtREV+R3 -74566.6150 149687.2301 - 0.0000 149763.0980 - 0.0000 151278.3559 - 0.0000 mtVer+R4 -74573.3786 149704.7571 - 0.0000 149781.7985 - 0.0000 151307.3712 - 0.0000 Blosum62+F+I -74523.4308 149632.8616 - 0.0000 149718.4048 - 0.0000 151315.8936 - 0.0000 mtZOA+R2 -74600.9977 149751.9955 - 0.0000 149826.7002 - 0.0000 151331.6331 - 0.0000 mtMet+R2 -74727.4793 150004.9586 - 0.0000 150079.6633 - 0.0000 151584.5962 - 0.0000 mtVer+R3 -74803.8761 150161.7523 - 0.0000 150237.6203 - 0.0000 151752.8781 - 0.0000 mtMAM+F+R2 -74770.8176 150129.6353 - 0.0000 150215.8052 - 0.0000 151818.4114 - 0.0000 mtInv+F+I -74810.8645 150207.7289 - 0.0000 150293.2721 - 0.0000 151890.7610 - 0.0000 HIVw+R2 -74885.2168 150320.4336 - 0.0000 150395.1384 - 0.0000 151900.0712 - 0.0000 mtInv+R2 -74895.0128 150340.0257 - 0.0000 150414.7304 - 0.0000 151919.6633 - 0.0000 cpREV -74911.3872 150368.7744 - 0.0000 150442.3260 - 0.0000 151936.9237 - 0.0000 Dayhoff+F -74954.9300 150493.8600 - 0.0000 150578.7791 - 0.0000 152171.1479 - 0.0000 DCMut+F -74955.0519 150494.1038 - 0.0000 150579.0229 - 0.0000 152171.3917 - 0.0000 PMB -75037.6514 150621.3028 - 0.0000 150694.8544 - 0.0000 152189.4521 - 0.0000 cpREV+F -74965.7763 150515.5526 - 0.0000 150600.4717 - 0.0000 152192.8405 - 0.0000 rtREV+F+I -74998.3437 150582.6874 - 0.0000 150668.2306 - 0.0000 152265.7194 - 0.0000 DCMut -75108.0530 150762.1061 - 0.0000 150835.6577 - 0.0000 152330.2554 - 0.0000 Dayhoff -75108.6393 150763.2786 - 0.0000 150836.8302 - 0.0000 152331.4279 - 0.0000 LG -75123.4768 150792.9535 - 0.0000 150866.5051 - 0.0000 152361.1028 - 0.0000 Blosum62 -75153.7605 150853.5211 - 0.0000 150927.0727 - 0.0000 152421.6704 - 0.0000 LG+F -75081.6619 150747.3238 - 0.0000 150832.2429 - 0.0000 152424.6117 - 0.0000 PMB+F -75085.6476 150755.2952 - 0.0000 150840.2143 - 0.0000 152432.5831 - 0.0000 Blosum62+F -75131.9287 150847.8575 - 0.0000 150932.7766 - 0.0000 152525.1454 - 0.0000 rtREV+I -75366.2694 151280.5389 - 0.0000 151354.6658 - 0.0000 152854.4323 - 0.0000 mtREV+R2 -75445.8860 151441.7720 - 0.0000 151516.4767 - 0.0000 153021.4095 - 0.0000 mtInv+F -75430.3672 151444.7343 - 0.0000 151529.6534 - 0.0000 153122.0222 - 0.0000 mtART+I+G4 -75544.1360 151638.2720 - 0.0000 151712.9767 - 0.0000 153217.9096 - 0.0000 mtART+G4 -75561.5309 151671.0617 - 0.0000 151745.1886 - 0.0000 153244.9552 - 0.0000 mtART+R4 -75632.4826 151822.9651 - 0.0000 151900.0065 - 0.0000 153425.5792 - 0.0000 mtART+R5 -75626.9735 151815.9470 - 0.0000 151894.1721 - 0.0000 153430.0494 - 0.0000 mtMet+F+I -75580.6924 151747.3848 - 0.0000 151832.9280 - 0.0000 153430.4168 - 0.0000 rtREV+F -75640.3496 151864.6992 - 0.0000 151949.6183 - 0.0000 153541.9871 - 0.0000 mtVer+R2 -75731.8382 152013.6764 - 0.0000 152088.3811 - 0.0000 153593.3140 - 0.0000 FLU+I -75824.0009 152196.0019 - 0.0000 152270.1288 - 0.0000 153769.8953 - 0.0000 FLU+F+I -75846.3353 152278.6706 - 0.0000 152364.2138 - 0.0000 153961.7026 - 0.0000 HIVb+F+I -75847.1827 152280.3654 - 0.0000 152365.9086 - 0.0000 153963.3975 - 0.0000 mtART+R3 -75961.2563 152476.5125 - 0.0000 152552.3805 - 0.0000 154067.6384 - 0.0000 rtREV -75982.4274 152510.8548 - 0.0000 152584.4065 - 0.0000 154079.0041 - 0.0000 HIVb+I -76005.1438 152558.2877 - 0.0000 152632.4146 - 0.0000 154132.1811 - 0.0000 mtMAM+R10 -76023.9709 152629.9419 - 0.0000 152714.2395 - 0.0000 154301.4856 - 0.0000 mtMAM+R9 -76044.7407 152667.4814 - 0.0000 152750.5438 - 0.0000 154327.5368 - 0.0000 mtMAM+R8 -76072.9567 152719.9135 - 0.0000 152801.7511 - 0.0000 154368.4807 - 0.0000 mtMAM+R7 -76113.5449 152797.0897 - 0.0000 152877.7128 - 0.0000 154434.1686 - 0.0000 mtMAM+I+G4 -76166.0406 152882.0811 - 0.0000 152956.7859 - 0.0000 154461.7187 - 0.0000 mtREV+F+I -76107.0143 152800.0286 - 0.0000 152885.5718 - 0.0000 154483.0607 - 0.0000 mtMAM+G4 -76190.0635 152928.1270 - 0.0000 153002.2539 - 0.0000 154502.0204 - 0.0000 mtMAM+R6 -76177.1249 152920.2497 - 0.0000 152999.6687 - 0.0000 154545.8404 - 0.0000 mtMet+F -76214.6360 153013.2721 - 0.0000 153098.1912 - 0.0000 154690.5600 - 0.0000 mtMAM+R5 -76287.2280 153136.4560 - 0.0000 153214.6811 - 0.0000 154750.5584 - 0.0000 FLU -76441.3768 153428.7536 - 0.0000 153502.3052 - 0.0000 154996.9029 - 0.0000 mtMAM+R4 -76465.5199 153489.0397 - 0.0000 153566.0812 - 0.0000 155091.6539 - 0.0000 mtZOA+F+I -76439.8605 153465.7211 - 0.0000 153551.2643 - 0.0000 155148.7531 - 0.0000 FLU+F -76464.6470 153513.2941 - 0.0000 153598.2132 - 0.0000 155190.5820 - 0.0000 HIVb+F -76579.7544 153743.5087 - 0.0000 153828.4278 - 0.0000 155420.7966 - 0.0000 mtMAM+R3 -76695.3286 153944.6571 - 0.0000 154020.5251 - 0.0000 155535.7829 - 0.0000 HIVb -76733.4317 154012.8633 - 0.0000 154086.4150 - 0.0000 155581.0126 - 0.0000 mtREV+F -76748.3994 154080.7989 - 0.0000 154165.7180 - 0.0000 155758.0868 - 0.0000 mtART+R2 -77082.6557 154715.3115 - 0.0000 154790.0162 - 0.0000 156294.9490 - 0.0000 mtVer+F+I -77013.5732 154613.1465 - 0.0000 154698.6897 - 0.0000 156296.1785 - 0.0000 mtZOA+F -77031.5419 154647.0838 - 0.0000 154732.0029 - 0.0000 156324.3717 - 0.0000 HIVw+F+I -77103.4524 154792.9049 - 0.0000 154878.4481 - 0.0000 156475.9369 - 0.0000 mtVer+F -77688.1133 155960.2266 - 0.0000 156045.1457 - 0.0000 157637.5145 - 0.0000 mtMAM+R2 -77795.9886 156141.9773 - 0.0000 156216.6820 - 0.0000 157721.6149 - 0.0000 HIVw+F -77856.7016 156297.4033 - 0.0000 156382.3224 - 0.0000 157974.6912 - 0.0000 HIVw+I -78012.9708 156573.9417 - 0.0000 156648.0686 - 0.0000 158147.8351 - 0.0000 HIVw -78734.5449 158015.0897 - 0.0000 158088.6414 - 0.0000 159583.2390 - 0.0000 mtART+F+I -78801.4023 158188.8046 - 0.0000 158274.3478 - 0.0000 159871.8367 - 0.0000 mtInv+I -78877.9859 158303.9717 - 0.0000 158378.0986 - 0.0000 159877.8652 - 0.0000 mtMet+I -78987.9798 158523.9596 - 0.0000 158598.0865 - 0.0000 160097.8531 - 0.0000 mtZOA+I -79298.3820 159144.7640 - 0.0000 159218.8909 - 0.0000 160718.6574 - 0.0000 mtREV+I -79343.0305 159234.0610 - 0.0000 159308.1879 - 0.0000 160807.9544 - 0.0000 mtMAM+F+I -79363.9437 159313.8874 - 0.0000 159399.4306 - 0.0000 160996.9194 - 0.0000 mtInv -79453.6677 159453.3354 - 0.0000 159526.8870 - 0.0000 161021.4847 - 0.0000 mtART+F -79385.6284 159355.2567 - 0.0000 159440.1758 - 0.0000 161032.5446 - 0.0000 mtMet -79563.4707 159672.9415 - 0.0000 159746.4931 - 0.0000 161241.0908 - 0.0000 mtZOA -79846.6598 160239.3197 - 0.0000 160312.8713 - 0.0000 161807.4690 - 0.0000 mtREV -79927.1555 160400.3110 - 0.0000 160473.8626 - 0.0000 161968.4603 - 0.0000 mtMAM+F -80049.3174 160682.6349 - 0.0000 160767.5540 - 0.0000 162359.9228 - 0.0000 mtVer+I -80414.5467 161377.0934 - 0.0000 161451.2203 - 0.0000 162950.9869 - 0.0000 mtVer -81003.9069 162553.8137 - 0.0000 162627.3653 - 0.0000 164121.9630 - 0.0000 mtART+I -82624.0693 165796.1387 - 0.0000 165870.2656 - 0.0000 167370.0321 - 0.0000 mtART -83177.4194 166900.8387 - 0.0000 166974.3904 - 0.0000 168468.9880 - 0.0000 mtMAM+I -83330.1038 167208.2076 - 0.0000 167282.3345 - 0.0000 168782.1010 - 0.0000 mtMAM -83940.8479 168427.6958 - 0.0000 168501.2474 - 0.0000 169995.8451 - 0.0000 AIC, w-AIC : Akaike information criterion scores and weights. AICc, w-AICc : Corrected AIC scores and weights. BIC, w-BIC : Bayesian information criterion scores and weights. Plus signs denote the 95% confidence sets. Minus signs denote significant exclusion. SUBSTITUTION PROCESS -------------------- Model of substitution: JTT+R7 State frequencies: (model) Model of rate heterogeneity: FreeRate with 7 categories Site proportion and rates: (0.1929,0.0734) (0.1390,0.2452) (0.1324,0.5049) (0.0903,0.8561) (0.1152,0.9103) (0.1957,1.6132) (0.1344,2.8785) Category Relative_rate Proportion 1 0.0734 0.1929 2 0.2452 0.1390 3 0.5049 0.1324 4 0.8561 0.0903 5 0.9103 0.1152 6 1.6132 0.1957 7 2.8785 0.1344 MAXIMUM LIKELIHOOD TREE ----------------------- Log-likelihood of the tree: -69987.6546 (s.e. 1942.9512) Unconstrained log-likelihood (without tree): -15149.4026 Number of free parameters (#branches + #model parameters): 285 Akaike information criterion (AIC) score: 140545.3093 Corrected Akaike information criterion (AICc) score: 140625.9324 Bayesian information criterion (BIC) score: 142182.3882 Total tree length (sum of branch lengths): 30.7388 Sum of internal branch lengths: 15.3675 (49.9938% of tree length) WARNING: 4 near-zero internal branches (<0.0004) should be treated with caution Such branches are denoted by '**' in the figure below NOTE: Tree is UNROOTED although outgroup taxon 'Glyma.20G029600.1.p' is drawn at root Numbers in parentheses are ultrafast bootstrap support (%) +--------------------------------Glyma.20G029600.1.p | | +--Glyma.17G078300.1.p | +---------| (100) | | +--Glyma.05G021100.1.p | +-------------------| (100) | | | +---------29941.m000220 | | +--| (96) | | | +--Thecc1EG014262t1 | | +---| (100) | | | +**Cotton_A_13344 | | | +--| (93) | | | | | +--Gorai.008G199100 | | | | +--| (99) | | | | | +--Gh_D12G1807 | | | | +--| (91) | | | | +--GOBAR_DD30619 | | +------| (100) | | +--Gh_A12G2653 | +--| (99) | | | +--BRADI2G54240.1 | | | +--| (100) | | | | +--Os01t0835500-01 | | | +----| (100) | | | | | +--BRADI2G22820.1 | | | | +--| (100) | | | | +--Os05t0465800-01 | | +---------| (100) | | | +--------Glyma.07G130800.1.p | | +---| (100) | | | +------30039.m000240 | | | +--| (100) | | | | | +--Potri.006G097200.1 | | | | +----| (100) | | | | +--Potri.016G112200.1 | | | +--| (96) | | | | | +--RbohH | | | | +-------| (100) | | | | +----RbohJ | | +--| (100) | | | +---Thecc1EG041962t1 | | +-----| (100) | | | +**GOBAR_AA36532 | | | +--| (61) | | | | | +--Cotton_A_24667 | | | | +--| (66) | | | | +--Gh_A07G0856 | | | +--| (16) | | | | +**GOBAR_DD21834 | | +-------| (100) | | | +--Gorai.001G106500 | | +--| (100) | | +--Gh_D07G0928 | +------| (100) | | | +------Os08t0453700-00 | | | +--| (100) | | | | +--BRADI3G37530.1 | | | +-----| (100) | | | | | +--BRADI4G31130.1 | | | | +--| (100) | | | | +--Os09t0438000-01 | | | +-------| (100) | | | | | +--------RbohE | | | | +--| (100) | | | | | +--Glyma.09G073200.1.p | | | | | +-----| (100) | | | | | | +--Glyma.15G182000.1.p | | | | | +--| (88) | | | | | | | +---Potri.006G137300.1 | | | | | | +--| (97) | | | | | | +--29739.m003705 | | | | +--| (100) | | | | | +--Thecc1EG037473t1 | | | | +--| (100) | | | | | +**Gorai.001G017400 | | | | | +**| (61) | | | | | | +**GOBAR_DD05976 | | | | | +--| (95) | | | | | | +--Gh_D07G0136 | | | | +--| (100) | | | | | +--Cotton_A_05673 | | | | +--| (78) | | | | | +**GOBAR_AA19212 | | | | +--| (96) | | | | +--Gh_A07G0143 | | +--| (100) | | | +--------------RbohI | | | +--| (91) | | | | +--RbohF | | | +--| (95) | | | | | +--30190.m011285 | | | | | +--| (100) | | | | | | | +--Potri.003G133300.1 | | | | | | +--| (100) | | | | | | +--Potri.001G098300.1 | | | | | +--| (78) | | | | | | | +--Glyma.05G212500.1.p | | | | | | | +--| (100) | | | | | | | | +--Glyma.08G018900.1.p | | | | | | +--| (100) | | | | | | | +--Glyma.11G020700.1.p | | | | | | +--| (100) | | | | | | +--Glyma.01G222700.1.p | | | | +--| (70) | | | | | +--Gh_A08G0982 | | | | | +--| (98) | | | | | | +--GOBAR_AA08909 | | | | | +--| (100) | | | | | | +--Cotton_A_31123 | | | | | +--| (100) | | | | | | | +--Gorai.004G137300 | | | | | | +--| (100) | | | | | | +--Gh_D08G1257 | | | | | +--| (96) | | | | | | | +**Gh_A02G1791 | | | | | | | +--| (100) | | | | | | | | | +--Cotton_A_38536 | | | | | | | | +--| (100) | | | | | | | | +**GOBAR_AA24991 | | | | | | +--| (100) | | | | | | | +--Gorai.003G085100 | | | | | | +--| (93) | | | | | | +--Gh_D03G0688 | | | | | +--| (65) | | | | | | +--Thecc1EG016350t1 | | | | +--| (100) | | | | | +--Gh_A12G2669 | | | | | +--| (100) | | | | | | +--GOBAR_AA23701 | | | | | +--| (93) | | | | | | +--Cotton_A_23171 | | | | +--| (100) | | | | | +--Gorai.008G250500 | | | | +--| (100) | | | | +--Gh_D12G2750 | | +---| (100) | | | +--Os01t0734200-00 | | | +--| (66) | | | | +--BRADI2G49040.1 | | +----| (100) | | | +--BRADI2G19090.1 | | +--| (100) | | +--Os05t0528000-01 | +--| (100) | | | +----BRADI4G05540.1 | | | +------| (100) | | | | +--Os12t0541300-01 | | | +--| (100) | | | | +-------Os01t0360200-01 | | +--| (99) | | | +----------RbohB | | +--| (100) | | | +--Glyma.10G152200.1.p | | | +--| (100) | | | | +--Glyma.20G236200.1.p | | | +--| (100) | | | | | +--Glyma.19G233900.1.p | | | | +--| (100) | | | | +--Glyma.03G236300.1.p | | +--| (55) | | | +--Thecc1EG026646t1 | | | +--| (100) | | | | | +--Gorai.007G299500 | | | | +--| (100) | | | | | +**Gh_A11G2426 | | | | | +--| (99) | | | | | | +--GOBAR_AA19255 | | | | | +**| (67) | | | | | | +**Gh_D11G2743 | | | | +**| (82) | | | | | +**GOBAR_DD12974 | | | | +--| (87) | | | | +--Cotton_A_29320 | | +--| (68) | | | +--Potri.005G026200.1 | | +--| (100) | | +--30128.m008818 | +--| (100) | | +-----BRADI4G17020.1 | +--| (100) | | | +-----RbohD | | | +--| (97) | | | | | +--Gorai.002G128200 | | | | | +--| (100) | | | | | | | +--GOBAR_AA29299 | | | | | | | +--| (98) | | | | | | | | +--Cotton_A_33534 | | | | | | | +--| (100) | | | | | | | | +--Gh_A01G0943 | | | | | | | +--| (71) | | | | | | | | +--GOBAR_DD22521 | | | | | | +--| (71) | | | | | | +--Gh_D01G0990 | | | | | +--| (78) | | | | | | | +--Gh_D05G1864 | | | | | | | +--| (100) | | | | | | | | +--Gorai.009G202500 | | | | | | +--| (100) | | | | | | | +--GOBAR_AA06210 | | | | | | +--| (81) | | | | | | | +--Cotton_A_13752 | | | | | | +--| (100) | | | | | | +--Gh_A05G1666 | | | | | +--| (59) | | | | | | +--Thecc1EG034030t1 | | | | +--| (98) | | | | | +--Gh_A05G2211 | | | | | +--| (100) | | | | | | +--Cotton_A_18772 | | | | | +--| (95) | | | | | | +--Gh_D05G2471 | | | | +--| (100) | | | | +--Gorai.009G273400 | | +--| (100) | | | +--Potri.001G070900.1 | | +--| (100) | | +--Potri.003G159800.1 | +--| (91) | | | +-----------RbohA | | +--| (99) | | | +---------RbohG | | +--| (100) | | +--RbohC | +--| (28) | | | +--30147.m014377 | | +--| (100) | | | +--Potri.015G109800.1 | | +--| (100) | | +--Potri.012G111600.1 | +---| (100) | | | +--Gh_A03G0476 | | | +--| (100) | | | | +--Cotton_A_16216 | | | +--| (77) | | | | +**GOBAR_AA01568 | | | +--| (78) | | | | | +--Gh_D03G1062 | | | | +--| (100) | | | | +--GOBAR_DD02070 | | | +--| (100) | | | | +--Gorai.003G117900 | | | +--| (87) | | | | | +--Gorai.008G212100 | | | | | +--| (82) | | | | | | | +--GOBAR_AA11222 | | | | | | +--| (96) | | | | | | | +**Cotton_A_07974 | | | | | | +--| (98) | | | | | | +--Gh_A12G1774 | | | | | +--| (83) | | | | | | +--GOBAR_DD20994 | | | | +--| (100) | | | | +--Gh_D12G1932 | | | +--| (82) | | | | +--Thecc1EG014791t1 | | +--| (100) | | | +--Cotton_A_03631 | | | +**| (89) | | | | +--Gh_A07G0398 | | | +--| (100) | | | | +--GOBAR_AA28632 | | +--| (100) | | | +--Gorai.001G053300 | | +--| (100) | | | +--GOBAR_DD31632 | | +--| (100) | | +--Gh_D07G0463 +--| (99) | | +--Glyma.04G203200.1.p | +--| (100) | +--Glyma.06G162300.1.p | | +--Glyma.05G198700.1.p +--| (94) +--Glyma.08G005900.1.p Tree in newick format: (Glyma.20G029600.1.p:1.9437707575,(((((((((((Glyma.17G078300.1.p:0.1512221167,Glyma.05G021100.1.p:0.1072200036)100:0.5947482991,(29941.m000220:0.6332316643,(Thecc1EG014262t1:0.2290105919,((Cotton_A_13344:0.0000017630,(Gorai.008G199100:0.0129713393,(Gh_D12G1807:0.0052784025,GOBAR_DD30619:0.0485142262)91:0.0042050896)99:0.0367828494)93:0.0054217217,Gh_A12G2653:0.0013575882)100:0.4048827913)100:0.2463182557)96:0.0770624996)100:1.1799974000,(((BRADI2G54240.1:0.1115280797,Os01t0835500-01:0.0897509443)100:0.1446777580,(BRADI2G22820.1:0.2170264186,Os05t0465800-01:0.1438151240)100:0.1812264450)100:0.3131772136,(Glyma.07G130800.1.p:0.5384288476,(((30039.m000240:0.4288340886,(Potri.006G097200.1:0.1525349379,Potri.016G112200.1:0.1552752431)100:0.3118401053)100:0.1284337071,(RbohH:0.2052025896,RbohJ:0.3229962347)100:0.4897030688)96:0.0603501485,(Thecc1EG041962t1:0.2389575159,(((GOBAR_AA36532:0.0000029252,(Cotton_A_24667:0.0017919964,Gh_A07G0856:0.0056293978)66:0.0071957286)61:0.0290855700,GOBAR_DD21834:0.0000024448)16:0.0035349315,(Gorai.001G106500:0.0055670480,Gh_D07G0928:0.0037945148)100:0.0116792562)100:0.4824073478)100:0.3603332273)100:0.1746451943)100:0.2740968748)100:0.5781080243)99:0.1512706395,((((Os08t0453700-00:0.4454578503,BRADI3G37530.1:0.1670037862)100:0.0920872580,(BRADI4G31130.1:0.0888923076,Os09t0438000-01:0.1187879014)100:0.1119548892)100:0.3482450455,(RbohE:0.5542052394,(((Glyma.09G073200.1.p:0.0361595579,Glyma.15G182000.1.p:0.0802771278)100:0.3673959834,(Potri.006G137300.1:0.2637116819,29739.m003705:0.1507037590)97:0.0456998896)88:0.0288075517,(Thecc1EG037473t1:0.0464788940,(((Gorai.001G017400:0.0000018642,GOBAR_DD05976:0.0000018642)61:0.0000020584,Gh_D07G0136:0.0036369967)95:0.0043404961,(Cotton_A_05673:0.0029791486,(GOBAR_AA19212:0.0000023149,Gh_A07G0143:0.0054435421)96:0.0028248561)78:0.0015364053)100:0.1064488777)100:0.1613746359)100:0.1103981249)100:0.1640687311)100:0.4832901237,(((RbohI:0.8924829993,RbohF:0.2284971401)91:0.0567988160,(((30190.m011285:0.1120185851,(Potri.003G133300.1:0.0659433719,Potri.001G098300.1:0.0846902527)100:0.0513250959)100:0.0417251930,((Glyma.05G212500.1.p:0.0242428264,Glyma.08G018900.1.p:0.0145100549)100:0.1067589072,(Glyma.11G020700.1.p:0.0219888508,Glyma.01G222700.1.p:0.0206466176)100:0.1335533375)100:0.0892180404)78:0.0346616542,((((((Gh_A08G0982:0.1477440268,GOBAR_AA08909:0.0088953058)98:0.0016918480,Cotton_A_31123:0.0604470947)100:0.0122689577,(Gorai.004G137300:0.0014218356,Gh_D08G1257:0.0165093769)100:0.0133092896)100:0.1348711967,((Gh_A02G1791:0.0000021778,(Cotton_A_38536:0.0014629597,GOBAR_AA24991:0.0000022848)100:0.0014629835)100:0.0029634673,(Gorai.003G085100:0.0044073777,Gh_D03G0688:0.0014703919)93:0.0014235436)100:0.0651458021)96:0.0143979784,Thecc1EG016350t1:0.0479021918)65:0.0118829510,(((Gh_A12G2669:0.0014524244,GOBAR_AA23701:0.0014578709)100:0.0025707402,Cotton_A_23171:0.0016132586)93:0.0039990779,(Gorai.008G250500:0.0014574505,Gh_D12G2750:0.0058460478)100:0.0066820433)100:0.0877534047)100:0.0825005164)70:0.0427076972)95:0.0963607288,((Os01t0734200-00:0.1443849496,BRADI2G49040.1:0.0737673216)66:0.0343580184,(BRADI2G19090.1:0.0853252098,Os05t0528000-01:0.0617298655)100:0.0762968678)100:0.2974755439)100:0.2359507838)100:0.2210248588)100:0.4161824678,(((BRADI4G05540.1:0.3190187358,Os12t0541300-01:0.1416715900)100:0.4242092677,Os01t0360200-01:0.5118766188)100:0.2019956005,(RbohB:0.6579933844,(((Glyma.10G152200.1.p:0.0164589316,Glyma.20G236200.1.p:0.0139517185)100:0.1291229343,(Glyma.19G233900.1.p:0.0188627575,Glyma.03G236300.1.p:0.0195345975)100:0.1126391198)100:0.0960932576,((Thecc1EG026646t1:0.0514514001,(Gorai.007G299500:0.0086287000,(((Gh_A11G2426:0.0000018642,GOBAR_AA19255:0.0095992558)99:0.0094576172,Gh_D11G2743:0.0000018642)67:0.0000018643,(GOBAR_DD12974:0.0000027022,Cotton_A_29320:0.0034530907)87:0.0017827773)82:0.0000023693)100:0.0676886884)100:0.1130612783,(Potri.005G026200.1:0.1339111231,30128.m008818:0.1208180758)100:0.0422987490)68:0.0399034664)55:0.0419137742)100:0.1069597349)99:0.0782635950)100:0.1099053281,BRADI4G17020.1:0.3982982306)100:0.1066102201,((RbohD:0.3841228893,((((Gorai.002G128200:0.0478894183,((((GOBAR_AA29299:0.0061951635,Cotton_A_33534:0.0062289730)98:0.0085333044,Gh_A01G0943:0.0020306739)100:0.0267670497,GOBAR_DD22521:0.0059958376)71:0.0066026701,Gh_D01G0990:0.0039054349)71:0.0015512511)100:0.1499769789,((Gh_D05G1864:0.0212729755,Gorai.009G202500:0.0058522924)100:0.0091152363,(GOBAR_AA06210:0.0061006561,(Cotton_A_13752:0.0150573020,Gh_A05G1666:0.0125830161)100:0.0164020058)81:0.0079057244)100:0.0821924896)78:0.0193954720,Thecc1EG034030t1:0.0417696231)59:0.0213012120,(((Gh_A05G2211:0.0181312704,Cotton_A_18772:0.0241631563)100:0.0030503338,Gh_D05G2471:0.0044155153)95:0.0018597970,Gorai.009G273400:0.0057027926)100:0.0727890119)98:0.0841858599)97:0.0664137068,(Potri.001G070900.1:0.1106575248,Potri.003G159800.1:0.0627004615)100:0.0961646719)100:0.1957598587)100:0.1151072668,(RbohA:0.7069876007,(RbohG:0.5826807950,RbohC:0.2032484337)100:0.2070072414)99:0.1032221659)91:0.0619119642,(30147.m014377:0.1446343203,(Potri.015G109800.1:0.0718564401,Potri.012G111600.1:0.0643548221)100:0.0890747933)100:0.1053372296)28:0.0285796470,(((((((Gh_A03G0476:0.0351735600,Cotton_A_16216:0.0015102586)100:0.0153890976,GOBAR_AA01568:0.0000028372)77:0.0119303584,(Gh_D03G1062:0.0030279718,GOBAR_DD02070:0.0015208943)100:0.0019111009)78:0.0085353300,Gorai.003G117900:0.0101618110)100:0.1455177903,(((Gorai.008G212100:0.0455770397,(GOBAR_AA11222:0.0069550125,(Cotton_A_07974:0.0000020550,Gh_A12G1774:0.0047548192)98:0.0065929046)96:0.0038183570)82:0.0018792643,GOBAR_DD20994:0.0315349551)83:0.0037056636,Gh_D12G1932:0.0036702270)100:0.1741039247)87:0.0088484596,Thecc1EG014791t1:0.0854029843)82:0.0257037314,(((Cotton_A_03631:0.0016414210,Gh_A07G0398:0.0015975959)89:0.0000015950,GOBAR_AA28632:0.0296636539)100:0.0173552991,(Gorai.001G053300:0.0031750383,(GOBAR_DD31632:0.0031990945,Gh_D07G0463:0.0015951566)100:0.0034213371)100:0.0367903861)100:0.1238132354)100:0.1315813332)100:0.2636476936,(Glyma.04G203200.1.p:0.0673517986,Glyma.06G162300.1.p:0.0653094362)100:0.1795048873)99:0.2031001127,(Glyma.05G198700.1.p:0.0718842570,Glyma.08G005900.1.p:0.0627378633)94:0.0812366377); CONSENSUS TREE -------------- Consensus tree is constructed from 1000bootstrap trees Log-likelihood of consensus tree: -69988.542671 Robinson-Foulds distance between ML tree and consensus tree: 4 Branches with support >0.000000% are kept (extended consensus) Branch lengths are optimized by maximum likelihood on original alignment Numbers in parentheses are bootstrap supports (%) +---------------------------------Glyma.20G029600.1.p | | +--Glyma.17G078300.1.p | +---------| (100) | | +--Glyma.05G021100.1.p | +-------------------| (100) | | | +----------29941.m000220 | | +--| (96) | | | +---Thecc1EG014262t1 | | +---| (100) | | | +--Cotton_A_13344 | | | +--| (93) | | | | | +--Gorai.008G199100 | | | | +--| (99) | | | | | +--Gh_D12G1807 | | | | +--| (91) | | | | +--GOBAR_DD30619 | | +------| (100) | | +--Gh_A12G2653 | +--| (99) | | | +--BRADI2G54240.1 | | | +--| (100) | | | | +--Os01t0835500-01 | | | +----| (100) | | | | | +--BRADI2G22820.1 | | | | +--| (100) | | | | +--Os05t0465800-01 | | +---------| (100) | | | +--------Glyma.07G130800.1.p | | +---| (100) | | | +------30039.m000240 | | | +--| (100) | | | | | +--Potri.006G097200.1 | | | | +----| (100) | | | | +--Potri.016G112200.1 | | | +--| (96) | | | | | +--RbohH | | | | +-------| (100) | | | | +----RbohJ | | +--| (100) | | | +---Thecc1EG041962t1 | | +-----| (100) | | | +--GOBAR_AA36532 | | | +--| (61) | | | | | +--Cotton_A_24667 | | | | +--| (66) | | | | +--Gh_A07G0856 | | +-------| (100) | | | +--GOBAR_DD21834 | | +--| (84) | | | +--Gorai.001G106500 | | +--| (100) | | +--Gh_D07G0928 | +------| (100) | | | +------Os08t0453700-00 | | | +--| (100) | | | | +--BRADI3G37530.1 | | | +-----| (100) | | | | | +--BRADI4G31130.1 | | | | +--| (100) | | | | +--Os09t0438000-01 | | | +-------| (100) | | | | | +--------RbohE | | | | +--| (100) | | | | | +--Glyma.09G073200.1.p | | | | | +-----| (100) | | | | | | +--Glyma.15G182000.1.p | | | | | +--| (88) | | | | | | | +---Potri.006G137300.1 | | | | | | +--| (97) | | | | | | +--29739.m003705 | | | | +--| (100) | | | | | +--Thecc1EG037473t1 | | | | +--| (100) | | | | | +--Gorai.001G017400 | | | | | +--| (61) | | | | | | +--GOBAR_DD05976 | | | | | +--| (95) | | | | | | +--Gh_D07G0136 | | | | +--| (100) | | | | | +--Cotton_A_05673 | | | | +--| (78) | | | | | +--GOBAR_AA19212 | | | | +--| (96) | | | | +--Gh_A07G0143 | | +--| (100) | | | +--------------RbohI | | | +--| (91) | | | | +---RbohF | | | +--| (95) | | | | | +--30190.m011285 | | | | | +--| (100) | | | | | | | +--Potri.003G133300.1 | | | | | | +--| (100) | | | | | | +--Potri.001G098300.1 | | | | | +--| (78) | | | | | | | +--Glyma.05G212500.1.p | | | | | | | +--| (100) | | | | | | | | +--Glyma.08G018900.1.p | | | | | | +--| (100) | | | | | | | +--Glyma.11G020700.1.p | | | | | | +--| (100) | | | | | | +--Glyma.01G222700.1.p | | | | +--| (70) | | | | | +--Gh_A08G0982 | | | | | +--| (98) | | | | | | +--GOBAR_AA08909 | | | | | +--| (100) | | | | | | +--Cotton_A_31123 | | | | | +--| (100) | | | | | | | +--Gorai.004G137300 | | | | | | +--| (100) | | | | | | +--Gh_D08G1257 | | | | | +--| (96) | | | | | | | +--Gh_A02G1791 | | | | | | | +--| (100) | | | | | | | | | +--Cotton_A_38536 | | | | | | | | +--| (100) | | | | | | | | +--GOBAR_AA24991 | | | | | | +--| (100) | | | | | | | +--Gorai.003G085100 | | | | | | +--| (93) | | | | | | +--Gh_D03G0688 | | | | | +--| (65) | | | | | | +--Thecc1EG016350t1 | | | | +--| (100) | | | | | +--Gh_A12G2669 | | | | | +--| (100) | | | | | | +--GOBAR_AA23701 | | | | | +--| (93) | | | | | | +--Cotton_A_23171 | | | | +--| (100) | | | | | +--Gorai.008G250500 | | | | +--| (100) | | | | +--Gh_D12G2750 | | +---| (100) | | | +--Os01t0734200-00 | | | +--| (66) | | | | +--BRADI2G49040.1 | | +----| (100) | | | +--BRADI2G19090.1 | | +--| (100) | | +--Os05t0528000-01 | +--| (100) | | | +----BRADI4G05540.1 | | | +------| (100) | | | | +--Os12t0541300-01 | | | +--| (100) | | | | +--------Os01t0360200-01 | | +--| (99) | | | +----------RbohB | | +--| (100) | | | +--Glyma.10G152200.1.p | | | +--| (100) | | | | +--Glyma.20G236200.1.p | | | +--| (100) | | | | | +--Glyma.19G233900.1.p | | | | +--| (100) | | | | +--Glyma.03G236300.1.p | | +--| (55) | | | +--Thecc1EG026646t1 | | | +--| (100) | | | | | +--Gorai.007G299500 | | | | +--| (100) | | | | | +--Gh_A11G2426 | | | | | +--| (99) | | | | | | +--GOBAR_AA19255 | | | | | +--| (67) | | | | | | +--Gh_D11G2743 | | | | +--| (82) | | | | | +--GOBAR_DD12974 | | | | +--| (87) | | | | +--Cotton_A_29320 | | +--| (68) | | | +--Potri.005G026200.1 | | +--| (100) | | +--30128.m008818 | +--| (100) | | +-----BRADI4G17020.1 | +--| (100) | | | +-----RbohD | | | +--| (97) | | | | | +--Gorai.002G128200 | | | | | +--| (100) | | | | | | | +--GOBAR_AA29299 | | | | | | | +--| (98) | | | | | | | | +--Cotton_A_33534 | | | | | | | +--| (100) | | | | | | | | +--Gh_A01G0943 | | | | | | | +--| (71) | | | | | | | | +--GOBAR_DD22521 | | | | | | +--| (71) | | | | | | +--Gh_D01G0990 | | | | | +--| (78) | | | | | | | +--Gh_D05G1864 | | | | | | | +--| (100) | | | | | | | | +--Gorai.009G202500 | | | | | | +--| (100) | | | | | | | +--GOBAR_AA06210 | | | | | | +--| (81) | | | | | | | +--Cotton_A_13752 | | | | | | +--| (100) | | | | | | +--Gh_A05G1666 | | | | | +--| (59) | | | | | | +--Thecc1EG034030t1 | | | | +--| (98) | | | | | +--Gh_A05G2211 | | | | | +--| (100) | | | | | | +--Cotton_A_18772 | | | | | +--| (95) | | | | | | +--Gh_D05G2471 | | | | +--| (100) | | | | +--Gorai.009G273400 | | +--| (100) | | | +--Potri.001G070900.1 | | +--| (100) | | +--Potri.003G159800.1 | +--| (91) | | | +-----------RbohA | | +--| (99) | | | +---------RbohG | | +--| (100) | | +--RbohC | +---| (100) | | | +--Gh_A03G0476 | | | +--| (100) | | | | +--Cotton_A_16216 | | | +--| (77) | | | | +--GOBAR_AA01568 | | | +--| (78) | | | | | +--Gh_D03G1062 | | | | +--| (100) | | | | +--GOBAR_DD02070 | | | +--| (100) | | | | +--Gorai.003G117900 | | | +--| (87) | | | | | +--Gorai.008G212100 | | | | | +--| (82) | | | | | | | +--GOBAR_AA11222 | | | | | | +--| (96) | | | | | | | +--Cotton_A_07974 | | | | | | +--| (98) | | | | | | +--Gh_A12G1774 | | | | | +--| (83) | | | | | | +--GOBAR_DD20994 | | | | +--| (100) | | | | +--Gh_D12G1932 | | | +--| (82) | | | | +--Thecc1EG014791t1 | | | +--| (100) | | | | | +--Cotton_A_03631 | | | | | +--| (89) | | | | | | +--Gh_A07G0398 | | | | | +--| (100) | | | | | | +--GOBAR_AA28632 | | | | +--| (100) | | | | | +--Gorai.001G053300 | | | | +--| (100) | | | | | +--GOBAR_DD31632 | | | | +--| (100) | | | | +--Gh_D07G0463 | | +--| (36) | | | +--30147.m014377 | | +--| (100) | | | +--Potri.015G109800.1 | | +--| (100) | | +--Potri.012G111600.1 +--| (99) | | +--Glyma.04G203200.1.p | +--| (100) | +--Glyma.06G162300.1.p | | +--Glyma.05G198700.1.p +--| (94) +--Glyma.08G005900.1.p Consensus tree in newick format: (Glyma.20G029600.1.p:1.9413931688,((((((((((Glyma.17G078300.1.p:0.1510367993,Glyma.05G021100.1.p:0.1068481528)100:0.5939039961,(29941.m000220:0.6318418744,(Thecc1EG014262t1:0.2288181404,((Cotton_A_13344:0.0000026913,(Gorai.008G199100:0.0129430698,(Gh_D12G1807:0.0052688834,GOBAR_DD30619:0.0483980632)91:0.0041954668)99:0.0367042178)93:0.0054092764,Gh_A12G2653:0.0013556975)100:0.4037152965)100:0.2458341844)96:0.0769568633)100:1.1775416372,(((BRADI2G54240.1:0.1112278832,Os01t0835500-01:0.0895910552)100:0.1443501699,(BRADI2G22820.1:0.2165704504,Os05t0465800-01:0.1435787562)100:0.1808982348)100:0.3114304968,(Glyma.07G130800.1.p:0.5381374616,(((30039.m000240:0.4280633240,(Potri.006G097200.1:0.1518859132,Potri.016G112200.1:0.1552642775)100:0.3111002642)100:0.1286464968,(RbohH:0.2046305683,RbohJ:0.3223889224)100:0.4879835985)96:0.0605111095,(Thecc1EG041962t1:0.2369095252,((GOBAR_AA36532:0.0016195011,(Cotton_A_24667:0.0018187695,Gh_A07G0856:0.0055869441)66:0.0055875256)61:0.0190592695,(GOBAR_DD21834:0.0018741430,(Gorai.001G106500:0.0053059980,Gh_D07G0928:0.0040437867)100:0.0126137593)84:0.0107019160)100:0.4761729532)100:0.3601888684)100:0.1734781490)100:0.2745273856)100:0.5777569012)99:0.1510594576,((((Os08t0453700-00:0.4444309617,BRADI3G37530.1:0.1667734570)100:0.0913941700,(BRADI4G31130.1:0.0887343917,Os09t0438000-01:0.1185623358)100:0.1123177183)100:0.3487515954,(RbohE:0.5530171672,(((Glyma.09G073200.1.p:0.0361217716,Glyma.15G182000.1.p:0.0800318516)100:0.3664252829,(Potri.006G137300.1:0.2630734372,29739.m003705:0.1503443736)97:0.0456190714)88:0.0287904488,(Thecc1EG037473t1:0.0463885416,(((Gorai.001G017400:0.0000026890,GOBAR_DD05976:0.0000026890)61:0.0000026890,Gh_D07G0136:0.0036275500)95:0.0043298304,(Cotton_A_05673:0.0029716088,(GOBAR_AA19212:0.0000026890,Gh_A07G0143:0.0054294326)96:0.0028177213)78:0.0015314266)100:0.1061558775)100:0.1608879175)100:0.1101651020)100:0.1625718740)100:0.4837555751,(((RbohI:0.8905759444,RbohF:0.2280684030)91:0.0568558590,(((30190.m011285:0.1118065518,(Potri.003G133300.1:0.0658162667,Potri.001G098300.1:0.0844951340)100:0.0512381260)100:0.0416261521,((Glyma.05G212500.1.p:0.0241951786,Glyma.08G018900.1.p:0.0144825594)100:0.1065468190,(Glyma.11G020700.1.p:0.0219486529,Glyma.01G222700.1.p:0.0205929534)100:0.1332505369)100:0.0890694502)78:0.0345650312,((((((Gh_A08G0982:0.1474384086,GOBAR_AA08909:0.0088757625)98:0.0016871586,Cotton_A_31123:0.0603010308)100:0.0122422025,(Gorai.004G137300:0.0014178629,Gh_D08G1257:0.0164701958)100:0.0132799135)100:0.1345839892,((Gh_A02G1791:0.0000026890,(Cotton_A_38536:0.0014598669,GOBAR_AA24991:0.0000026890)100:0.0014598903)100:0.0029571702,(Gorai.003G085100:0.0043982771,Gh_D03G0688:0.0014668296)93:0.0014197477)100:0.0650162753)96:0.0143738405,Thecc1EG016350t1:0.0478154807)65:0.0118207600,(((Gh_A12G2669:0.0014494549,GOBAR_AA23701:0.0014544675)100:0.0025653221,Cotton_A_23171:0.0016096668)93:0.0039918265,(Gorai.008G250500:0.0014540333,Gh_D12G2750:0.0058341142)100:0.0066680419)100:0.0876044913)100:0.0824198975)70:0.0424912406)95:0.0962958324,((Os01t0734200-00:0.1442494413,BRADI2G49040.1:0.0734981904)66:0.0344210107,(BRADI2G19090.1:0.0850805721,Os05t0528000-01:0.0615981092)100:0.0759905453)100:0.2967790706)100:0.2341560410)100:0.2225931639)100:0.4158813325,(((BRADI4G05540.1:0.3192240508,Os12t0541300-01:0.1406879559)100:0.4235890406,Os01t0360200-01:0.5114539885)100:0.2014041403,(RbohB:0.6570134266,(((Glyma.10G152200.1.p:0.0163838063,Glyma.20G236200.1.p:0.0139693278)100:0.1292027875,(Glyma.19G233900.1.p:0.0188415196,Glyma.03G236300.1.p:0.0194869499)100:0.1122001776)100:0.0965271912,((Thecc1EG026646t1:0.0513442988,(Gorai.007G299500:0.0086125526,(((Gh_A11G2426:0.0000026890,GOBAR_AA19255:0.0095804639)99:0.0094392470,Gh_D11G2743:0.0000026890)67:0.0000026890,(GOBAR_DD12974:0.0000026890,Cotton_A_29320:0.0034465790)87:0.0017801295)82:0.0000022748)100:0.0675761628)100:0.1126299841,(Potri.005G026200.1:0.1339803951,30128.m008818:0.1203505940)100:0.0423546315)68:0.0392671474)55:0.0415927957)100:0.1075151324)99:0.0785062504)100:0.1133355924,BRADI4G17020.1:0.3943424173)100:0.1080401012,((RbohD:0.3840484259,((((Gorai.002G128200:0.0478067371,((((GOBAR_AA29299:0.0061849432,Cotton_A_33534:0.0062190463)98:0.0085123815,Gh_A01G0943:0.0020378548)100:0.0267198371,GOBAR_DD22521:0.0060001288)71:0.0065922590,Gh_D01G0990:0.0038994020)71:0.0015487830)100:0.1499678762,((Gh_D05G1864:0.0212474910,Gorai.009G202500:0.0058442472)100:0.0091063771,(GOBAR_AA06210:0.0060921873,(Cotton_A_13752:0.0150366113,Gh_A05G1666:0.0125634707)100:0.0163824815)81:0.0078956609)100:0.0819595847)78:0.0193354916,Thecc1EG034030t1:0.0419885022)59:0.0216183233,(((Gh_A05G2211:0.0180970496,Cotton_A_18772:0.0241264236)100:0.0030426058,Gh_D05G2471:0.0044099156)95:0.0018547755,Gorai.009G273400:0.0056962749)100:0.0721852250)98:0.0835838320)97:0.0653237798,(Potri.001G070900.1:0.1101007059,Potri.003G159800.1:0.0629962380)100:0.0975730467)100:0.1921550569)100:0.1041001460,(RbohA:0.7050883899,(RbohG:0.5821968934,RbohC:0.2028970809)100:0.2117935137)99:0.1099269282)91:0.0508113167,((((((((Gh_A03G0476:0.0351061490,Cotton_A_16216:0.0015058475)100:0.0153598580,GOBAR_AA01568:0.0000026931)77:0.0119075881,(Gh_D03G1062:0.0030191568,GOBAR_DD02070:0.0015164394)100:0.0019061120)78:0.0085185012,Gorai.003G117900:0.0101395471)100:0.1460456528,(((Gorai.008G212100:0.0455048949,(GOBAR_AA11222:0.0069393016,(Cotton_A_07974:0.0000026890,Gh_A12G1774:0.0047462767)98:0.0065810675)96:0.0038124049)82:0.0018727970,GOBAR_DD20994:0.0314805872)83:0.0036900152,Gh_D12G1932:0.0036665341)100:0.1731895156)87:0.0091880950,Thecc1EG014791t1:0.0850764911)82:0.0208279748,(((Cotton_A_03631:0.0016376614,Gh_A07G0398:0.0015949308)89:0.0000026913,GOBAR_AA28632:0.0296155602)100:0.0171673267,(Gorai.001G053300:0.0031686308,(GOBAR_DD31632:0.0031927073,Gh_D07G0463:0.0015924468)100:0.0034138067)100:0.0368680789)100:0.1279702488)100:0.1452800576,(30147.m014377:0.1424842995,(Potri.015G109800.1:0.0722907744,Potri.012G111600.1:0.0639766967)100:0.0912516777)100:0.1050857042)36:0.0360996320)100:0.2559982393,(Glyma.04G203200.1.p:0.0654709933,Glyma.06G162300.1.p:0.0666191965)100:0.1826620820)99:0.2014993903,(Glyma.05G198700.1.p:0.0728505602,Glyma.08G005900.1.p:0.0617928826)94:0.0791910417); TIME STAMP ---------- Date and time: Fri Jul 12 12:37:54 2019 Total CPU time used: 12732.58735 seconds (3h:32m:12s) Total wall-clock time used: 4280.772909 seconds (1h:11m:20s)