> # -- inspect summary > summary(all.exgauss.n.1k.500.n.0.10.wid.1) Family: exgaussian Links: mu = identity; sigma = identity; beta = identity Formula: rt ~ directness * (zSPQPos + zSPQNeg + zSPQDis) * soa * relation + (soa * relation + 1 | part) + (directness + zSPQPos + zSPQNeg + zSPQDis + soa * relation + 1 | prime) + (zSPQPos + zSPQNeg + zSPQDis + soa * relation + 1 | targ) Data: all.data (Number of observations: 36910) Samples: 5 chains, each with iter = 6000; warmup = 1000; thin = 1; total post-warmup samples = 25000 Group-Level Effects: ~part (Number of levels: 160) Estimate Est.Error l-95% CI u-95% CI Eff.Sample sd(Intercept) 60.50 2.82 55.19 66.23 3548 sd(soa1) 21.76 1.32 19.31 24.49 5884 sd(relation1) 6.46 0.78 4.98 8.03 10956 sd(soa1:relation1) 4.71 0.82 3.10 6.31 8446 cor(Intercept,soa1) 0.24 0.07 0.11 0.38 4900 cor(Intercept,relation1) 0.11 0.10 -0.08 0.31 18376 cor(soa1,relation1) 0.17 0.11 -0.06 0.39 16593 cor(Intercept,soa1:relation1) 0.30 0.12 0.07 0.53 17301 cor(soa1,soa1:relation1) 0.07 0.14 -0.20 0.33 22513 cor(relation1,soa1:relation1) 0.56 0.16 0.22 0.84 8627 Rhat sd(Intercept) 1.00 sd(soa1) 1.00 sd(relation1) 1.00 sd(soa1:relation1) 1.00 cor(Intercept,soa1) 1.00 cor(Intercept,relation1) 1.00 cor(soa1,relation1) 1.00 cor(Intercept,soa1:relation1) 1.00 cor(soa1,soa1:relation1) 1.00 cor(relation1,soa1:relation1) 1.00 ~prime (Number of levels: 60) Estimate Est.Error l-95% CI u-95% CI Eff.Sample sd(Intercept) 2.51 1.35 0.17 5.18 2124 sd(directness1) 4.12 1.46 0.83 6.78 1699 sd(zSPQPos) 0.99 0.69 0.04 2.55 9894 sd(zSPQNeg) 0.90 0.65 0.04 2.40 12187 sd(zSPQDis) 0.69 0.52 0.03 1.92 16314 sd(soa1) 2.22 1.03 0.20 4.15 5264 sd(relation1) 2.51 1.42 0.16 5.40 2954 sd(soa1:relation1) 1.27 0.84 0.06 3.07 6893 cor(Intercept,directness1) 0.27 0.28 -0.36 0.73 3329 cor(Intercept,zSPQPos) -0.01 0.30 -0.58 0.57 26692 cor(directness1,zSPQPos) -0.06 0.30 -0.61 0.52 29971 cor(Intercept,zSPQNeg) 0.06 0.30 -0.52 0.61 29085 cor(directness1,zSPQNeg) 0.01 0.29 -0.56 0.57 37419 cor(zSPQPos,zSPQNeg) -0.01 0.30 -0.58 0.58 27255 cor(Intercept,zSPQDis) -0.06 0.30 -0.63 0.53 36109 cor(directness1,zSPQDis) -0.08 0.30 -0.63 0.52 36309 cor(zSPQPos,zSPQDis) -0.02 0.30 -0.59 0.57 29801 cor(zSPQNeg,zSPQDis) -0.08 0.31 -0.65 0.53 21877 cor(Intercept,soa1) 0.07 0.28 -0.49 0.59 12924 cor(directness1,soa1) 0.05 0.27 -0.48 0.56 15222 cor(zSPQPos,soa1) -0.06 0.30 -0.61 0.52 12638 cor(zSPQNeg,soa1) 0.02 0.29 -0.54 0.58 14021 cor(zSPQDis,soa1) -0.05 0.30 -0.61 0.53 12949 cor(Intercept,relation1) -0.01 0.30 -0.57 0.57 10519 cor(directness1,relation1) 0.02 0.28 -0.53 0.57 12849 cor(zSPQPos,relation1) -0.05 0.30 -0.61 0.54 11392 cor(zSPQNeg,relation1) -0.01 0.30 -0.58 0.56 11572 cor(zSPQDis,relation1) -0.01 0.30 -0.59 0.57 12323 cor(soa1,relation1) -0.05 0.29 -0.60 0.52 13291 cor(Intercept,soa1:relation1) 0.01 0.30 -0.56 0.58 23442 cor(directness1,soa1:relation1) -0.01 0.29 -0.57 0.55 24738 cor(zSPQPos,soa1:relation1) 0.02 0.30 -0.55 0.59 22009 cor(zSPQNeg,soa1:relation1) -0.03 0.30 -0.60 0.56 20957 cor(zSPQDis,soa1:relation1) 0.01 0.30 -0.57 0.57 19024 cor(soa1,soa1:relation1) -0.03 0.29 -0.58 0.54 22361 cor(relation1,soa1:relation1) 0.07 0.30 -0.51 0.62 18463 Rhat sd(Intercept) 1.00 sd(directness1) 1.00 sd(zSPQPos) 1.00 sd(zSPQNeg) 1.00 sd(zSPQDis) 1.00 sd(soa1) 1.00 sd(relation1) 1.00 sd(soa1:relation1) 1.00 cor(Intercept,directness1) 1.00 cor(Intercept,zSPQPos) 1.00 cor(directness1,zSPQPos) 1.00 cor(Intercept,zSPQNeg) 1.00 cor(directness1,zSPQNeg) 1.00 cor(zSPQPos,zSPQNeg) 1.00 cor(Intercept,zSPQDis) 1.00 cor(directness1,zSPQDis) 1.00 cor(zSPQPos,zSPQDis) 1.00 cor(zSPQNeg,zSPQDis) 1.00 cor(Intercept,soa1) 1.00 cor(directness1,soa1) 1.00 cor(zSPQPos,soa1) 1.00 cor(zSPQNeg,soa1) 1.00 cor(zSPQDis,soa1) 1.00 cor(Intercept,relation1) 1.00 cor(directness1,relation1) 1.00 cor(zSPQPos,relation1) 1.00 cor(zSPQNeg,relation1) 1.00 cor(zSPQDis,relation1) 1.00 cor(soa1,relation1) 1.00 cor(Intercept,soa1:relation1) 1.00 cor(directness1,soa1:relation1) 1.00 cor(zSPQPos,soa1:relation1) 1.00 cor(zSPQNeg,soa1:relation1) 1.00 cor(zSPQDis,soa1:relation1) 1.00 cor(soa1,soa1:relation1) 1.00 cor(relation1,soa1:relation1) 1.00 ~targ (Number of levels: 120) Estimate Est.Error l-95% CI u-95% CI Eff.Sample sd(Intercept) 19.44 1.37 16.93 22.32 6512 sd(zSPQPos) 1.47 0.89 0.08 3.32 7529 sd(zSPQNeg) 0.80 0.60 0.03 2.23 11823 sd(zSPQDis) 1.23 0.78 0.07 2.92 7425 sd(soa1) 3.31 0.79 1.73 4.85 9710 sd(relation1) 3.44 1.29 0.67 5.74 1916 sd(soa1:relation1) 1.70 1.05 0.08 3.82 4236 cor(Intercept,zSPQPos) -0.22 0.26 -0.68 0.37 25539 cor(Intercept,zSPQNeg) 0.02 0.30 -0.56 0.59 35156 cor(zSPQPos,zSPQNeg) -0.02 0.32 -0.61 0.59 30697 cor(Intercept,zSPQDis) -0.24 0.28 -0.72 0.38 25555 cor(zSPQPos,zSPQDis) -0.04 0.31 -0.62 0.57 21287 cor(zSPQNeg,zSPQDis) -0.09 0.32 -0.68 0.55 18385 cor(Intercept,soa1) 0.50 0.15 0.17 0.77 21784 cor(zSPQPos,soa1) -0.14 0.29 -0.66 0.46 7648 cor(zSPQNeg,soa1) -0.09 0.31 -0.67 0.53 8299 cor(zSPQDis,soa1) -0.27 0.30 -0.77 0.39 7941 cor(Intercept,relation1) -0.35 0.19 -0.69 0.06 12709 cor(zSPQPos,relation1) 0.09 0.30 -0.50 0.64 6355 cor(zSPQNeg,relation1) -0.04 0.31 -0.62 0.56 6352 cor(zSPQDis,relation1) 0.02 0.30 -0.56 0.60 7720 cor(soa1,relation1) -0.11 0.25 -0.60 0.39 11803 cor(Intercept,soa1:relation1) 0.01 0.25 -0.49 0.50 33370 cor(zSPQPos,soa1:relation1) -0.09 0.31 -0.65 0.54 11757 cor(zSPQNeg,soa1:relation1) -0.03 0.32 -0.62 0.59 13736 cor(zSPQDis,soa1:relation1) 0.03 0.31 -0.56 0.61 13890 cor(soa1,soa1:relation1) 0.02 0.29 -0.54 0.57 22215 cor(relation1,soa1:relation1) 0.17 0.30 -0.47 0.69 9928 Rhat sd(Intercept) 1.00 sd(zSPQPos) 1.00 sd(zSPQNeg) 1.00 sd(zSPQDis) 1.00 sd(soa1) 1.00 sd(relation1) 1.00 sd(soa1:relation1) 1.00 cor(Intercept,zSPQPos) 1.00 cor(Intercept,zSPQNeg) 1.00 cor(zSPQPos,zSPQNeg) 1.00 cor(Intercept,zSPQDis) 1.00 cor(zSPQPos,zSPQDis) 1.00 cor(zSPQNeg,zSPQDis) 1.00 cor(Intercept,soa1) 1.00 cor(zSPQPos,soa1) 1.00 cor(zSPQNeg,soa1) 1.00 cor(zSPQDis,soa1) 1.00 cor(Intercept,relation1) 1.00 cor(zSPQPos,relation1) 1.00 cor(zSPQNeg,relation1) 1.00 cor(zSPQDis,relation1) 1.00 cor(soa1,relation1) 1.00 cor(Intercept,soa1:relation1) 1.00 cor(zSPQPos,soa1:relation1) 1.00 cor(zSPQNeg,soa1:relation1) 1.00 cor(zSPQDis,soa1:relation1) 1.00 cor(soa1,soa1:relation1) 1.00 cor(relation1,soa1:relation1) 1.00 Population-Level Effects: Estimate Est.Error l-95% CI u-95% CI Intercept 615.54 5.20 605.39 625.91 directness1 8.49 4.66 -0.77 17.47 zSPQPos -0.52 4.72 -9.74 8.76 zSPQNeg -1.41 4.95 -11.23 8.16 zSPQDis 3.41 5.16 -6.60 13.60 soa1 7.76 1.87 4.08 11.42 relation1 -7.11 0.89 -8.85 -5.35 directness1:zSPQPos 3.64 4.81 -5.85 13.01 directness1:zSPQNeg -3.26 5.06 -13.34 6.58 directness1:zSPQDis 0.69 5.23 -9.53 10.88 directness1:soa1 1.78 1.84 -1.88 5.37 zSPQPos:soa1 0.58 2.02 -3.36 4.59 zSPQNeg:soa1 0.04 2.11 -4.12 4.20 zSPQDis:soa1 0.56 2.27 -3.94 4.96 directness1:relation1 -4.52 0.82 -6.12 -2.92 zSPQPos:relation1 0.09 0.82 -1.54 1.69 zSPQNeg:relation1 -0.29 0.88 -2.01 1.42 zSPQDis:relation1 -0.50 0.95 -2.39 1.36 soa1:relation1 -0.51 0.70 -1.90 0.88 directness1:zSPQPos:soa1 -1.75 2.00 -5.67 2.22 directness1:zSPQNeg:soa1 -0.80 2.13 -5.05 3.41 directness1:zSPQDis:soa1 0.57 2.25 -3.88 4.98 directness1:zSPQPos:relation1 -0.51 0.82 -2.11 1.12 directness1:zSPQNeg:relation1 -0.58 0.87 -2.29 1.13 directness1:zSPQDis:relation1 0.64 0.94 -1.18 2.48 directness1:soa1:relation1 -0.92 0.67 -2.23 0.38 zSPQPos:soa1:relation1 -1.02 0.71 -2.40 0.40 zSPQNeg:soa1:relation1 -0.38 0.76 -1.87 1.12 zSPQDis:soa1:relation1 0.11 0.82 -1.50 1.72 directness1:zSPQPos:soa1:relation1 -0.85 0.72 -2.26 0.56 directness1:zSPQNeg:soa1:relation1 -0.55 0.76 -2.06 0.93 directness1:zSPQDis:soa1:relation1 0.37 0.82 -1.24 1.98 Eff.Sample Rhat Intercept 1672 1.00 directness1 1878 1.00 zSPQPos 2506 1.00 zSPQNeg 2359 1.00 zSPQDis 2824 1.00 soa1 4314 1.00 relation1 15067 1.00 directness1:zSPQPos 2371 1.00 directness1:zSPQNeg 2485 1.00 directness1:zSPQDis 2890 1.00 directness1:soa1 4211 1.00 zSPQPos:soa1 4621 1.00 zSPQNeg:soa1 4720 1.00 zSPQDis:soa1 4637 1.00 directness1:relation1 15431 1.00 zSPQPos:relation1 16001 1.00 zSPQNeg:relation1 15772 1.00 zSPQDis:relation1 15232 1.00 soa1:relation1 18454 1.00 directness1:zSPQPos:soa1 4320 1.00 directness1:zSPQNeg:soa1 4534 1.00 directness1:zSPQDis:soa1 4743 1.00 directness1:zSPQPos:relation1 16577 1.00 directness1:zSPQNeg:relation1 15263 1.00 directness1:zSPQDis:relation1 14984 1.00 directness1:soa1:relation1 19409 1.00 zSPQPos:soa1:relation1 16587 1.00 zSPQNeg:soa1:relation1 18657 1.00 zSPQDis:soa1:relation1 17319 1.00 directness1:zSPQPos:soa1:relation1 18822 1.00 directness1:zSPQNeg:soa1:relation1 17410 1.00 directness1:zSPQDis:soa1:relation1 17422 1.00 Family Specific Parameters: Estimate Est.Error l-95% CI u-95% CI Eff.Sample Rhat sigma 49.47 0.55 48.40 50.55 33107 1.00 beta 141.50 0.98 139.57 143.42 43983 1.00 Samples were drawn using sampling(NUTS). For each parameter, Eff.Sample is a crude measure of effective sample size, and Rhat is the potential scale reduction factor on split chains (at convergence, Rhat = 1). > prior_summary(all.exgauss.n.1k.500.n.0.10.wid.1) prior class coef group resp 1 normal(1000, 500) Intercept 2 lkj_corr_cholesky(2) L 3 L part 4 L prime 5 L targ 6 normal(0, 10) b 7 b directness1 8 b directness1:relation1 9 b directness1:soa1 10 b directness1:soa1:relation1 11 b directness1:zSPQDis 12 b directness1:zSPQDis:relation1 13 b directness1:zSPQDis:soa1 14 b directness1:zSPQDis:soa1:relation1 15 b directness1:zSPQNeg 16 b directness1:zSPQNeg:relation1 17 b directness1:zSPQNeg:soa1 18 b directness1:zSPQNeg:soa1:relation1 19 b directness1:zSPQPos 20 b directness1:zSPQPos:relation1 21 b directness1:zSPQPos:soa1 22 b directness1:zSPQPos:soa1:relation1 23 b relation1 24 b soa1 25 b soa1:relation1 26 b zSPQDis 27 b zSPQDis:relation1 28 b zSPQDis:soa1 29 b zSPQDis:soa1:relation1 30 b zSPQNeg 31 b zSPQNeg:relation1 32 b zSPQNeg:soa1 33 b zSPQNeg:soa1:relation1 34 b zSPQPos 35 b zSPQPos:relation1 36 b zSPQPos:soa1 37 b zSPQPos:soa1:relation1 38 normal(0, 10) beta 39 normal(0, 10) sd 40 sd part 41 sd Intercept part 42 sd relation1 part 43 sd soa1 part 44 sd soa1:relation1 part 45 sd prime 46 sd Intercept prime 47 sd directness1 prime 48 sd relation1 prime 49 sd soa1 prime 50 sd soa1:relation1 prime 51 sd zSPQDis prime 52 sd zSPQNeg prime 53 sd zSPQPos prime 54 sd targ 55 sd Intercept targ 56 sd relation1 targ 57 sd soa1 targ 58 sd soa1:relation1 targ 59 sd zSPQDis targ 60 sd zSPQNeg targ 61 sd zSPQPos targ 62 normal(0, 10) sigma dpar nlpar bound 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 > > # -- save model data > saveRDS(all.exgauss.n.1k.500.n.0.10.wid.1, "all.exgauss.n.1k.500.n.0.10.wid.1-2x-231019.rds") > > proc.time() user system elapsed 565429.93 188.75 123344.60