> # -- inspect summary > summary(all.exgauss.n.1k.500.n.0.10.wid.2) Family: exgaussian Links: mu = identity; sigma = identity; beta = identity Formula: rt ~ directness * (zOLIFEPos + zOLIFENeg + zOLIFEDis + zOLIFEImp) * soa * relation + (soa * relation + 1 | part) + (directness + zOLIFEPos + zOLIFENeg + zOLIFEDis + zOLIFEImp + soa * relation + 1 | prime) + (zOLIFEPos + zOLIFENeg + zOLIFEDis + zOLIFEImp + soa * relation + 1 | targ) Data: all.data (Number of observations: 36910) Samples: 5 chains, each with iter = 6000; warmup = 1000; thin = 1; total post-warmup samples = 25000 Group-Level Effects: ~part (Number of levels: 160) Estimate Est.Error l-95% CI u-95% CI Eff.Sample sd(Intercept) 60.53 2.88 55.22 66.47 3510 sd(soa1) 21.31 1.31 18.90 24.01 5560 sd(relation1) 6.20 0.77 4.69 7.74 10665 sd(soa1:relation1) 4.82 0.81 3.24 6.40 8134 cor(Intercept,soa1) 0.23 0.07 0.08 0.37 5268 cor(Intercept,relation1) 0.11 0.10 -0.09 0.31 16336 cor(soa1,relation1) 0.19 0.12 -0.04 0.41 16450 cor(Intercept,soa1:relation1) 0.30 0.12 0.07 0.54 16081 cor(soa1,soa1:relation1) 0.09 0.13 -0.18 0.35 20074 cor(relation1,soa1:relation1) 0.58 0.16 0.24 0.85 7634 Rhat sd(Intercept) 1.00 sd(soa1) 1.00 sd(relation1) 1.00 sd(soa1:relation1) 1.00 cor(Intercept,soa1) 1.00 cor(Intercept,relation1) 1.00 cor(soa1,relation1) 1.00 cor(Intercept,soa1:relation1) 1.00 cor(soa1,soa1:relation1) 1.00 cor(relation1,soa1:relation1) 1.00 ~prime (Number of levels: 60) Estimate Est.Error l-95% CI u-95% CI Eff.Sample sd(Intercept) 2.54 1.36 0.16 5.22 2452 sd(directness1) 4.25 1.41 1.03 6.87 2558 sd(zOLIFEPos) 1.38 0.86 0.07 3.21 7052 sd(zOLIFENeg) 0.71 0.53 0.03 1.96 14238 sd(zOLIFEDis) 0.94 0.68 0.04 2.50 10849 sd(zOLIFEImp) 1.03 0.73 0.05 2.69 9020 sd(soa1) 2.16 1.03 0.19 4.10 4553 sd(relation1) 2.67 1.44 0.17 5.48 3073 sd(soa1:relation1) 1.30 0.85 0.06 3.10 6566 cor(Intercept,directness1) 0.26 0.27 -0.33 0.71 3636 cor(Intercept,zOLIFEPos) 0.07 0.28 -0.49 0.60 19358 cor(directness1,zOLIFEPos) -0.01 0.27 -0.53 0.52 22601 cor(Intercept,zOLIFENeg) 0.00 0.29 -0.55 0.56 31373 cor(directness1,zOLIFENeg) 0.00 0.28 -0.54 0.54 33433 cor(zOLIFEPos,zOLIFENeg) -0.00 0.29 -0.55 0.55 31982 cor(Intercept,zOLIFEDis) -0.02 0.29 -0.57 0.53 25218 cor(directness1,zOLIFEDis) -0.07 0.28 -0.59 0.48 27262 cor(zOLIFEPos,zOLIFEDis) -0.07 0.29 -0.60 0.50 23037 cor(zOLIFENeg,zOLIFEDis) -0.02 0.29 -0.57 0.54 21325 cor(Intercept,zOLIFEImp) 0.02 0.28 -0.54 0.56 27439 cor(directness1,zOLIFEImp) -0.01 0.28 -0.55 0.52 26401 cor(zOLIFEPos,zOLIFEImp) -0.04 0.29 -0.58 0.53 22760 cor(zOLIFENeg,zOLIFEImp) -0.01 0.29 -0.57 0.55 20967 cor(zOLIFEDis,zOLIFEImp) -0.01 0.29 -0.55 0.54 21825 cor(Intercept,soa1) 0.06 0.27 -0.49 0.56 12310 cor(directness1,soa1) 0.04 0.25 -0.46 0.53 17350 cor(zOLIFEPos,soa1) -0.07 0.28 -0.59 0.48 12796 cor(zOLIFENeg,soa1) 0.02 0.29 -0.53 0.57 13588 cor(zOLIFEDis,soa1) 0.05 0.28 -0.51 0.58 14200 cor(zOLIFEImp,soa1) 0.06 0.28 -0.50 0.59 13678 cor(Intercept,relation1) -0.01 0.28 -0.55 0.53 9427 cor(directness1,relation1) 0.04 0.27 -0.49 0.56 13041 cor(zOLIFEPos,relation1) -0.06 0.28 -0.58 0.49 11394 cor(zOLIFENeg,relation1) -0.05 0.29 -0.59 0.51 10215 cor(zOLIFEDis,relation1) -0.05 0.28 -0.58 0.51 10835 cor(zOLIFEImp,relation1) -0.05 0.29 -0.59 0.51 12011 cor(soa1,relation1) -0.05 0.28 -0.57 0.50 12424 cor(Intercept,soa1:relation1) 0.02 0.28 -0.53 0.55 21723 cor(directness1,soa1:relation1) 0.00 0.28 -0.53 0.54 23621 cor(zOLIFEPos,soa1:relation1) 0.03 0.29 -0.53 0.57 19777 cor(zOLIFENeg,soa1:relation1) -0.04 0.29 -0.58 0.52 17609 cor(zOLIFEDis,soa1:relation1) -0.02 0.29 -0.56 0.53 18891 cor(zOLIFEImp,soa1:relation1) 0.03 0.29 -0.53 0.57 18703 cor(soa1,soa1:relation1) -0.03 0.28 -0.56 0.51 20880 cor(relation1,soa1:relation1) 0.07 0.28 -0.49 0.60 18219 Rhat sd(Intercept) 1.00 sd(directness1) 1.00 sd(zOLIFEPos) 1.00 sd(zOLIFENeg) 1.00 sd(zOLIFEDis) 1.00 sd(zOLIFEImp) 1.00 sd(soa1) 1.00 sd(relation1) 1.00 sd(soa1:relation1) 1.00 cor(Intercept,directness1) 1.00 cor(Intercept,zOLIFEPos) 1.00 cor(directness1,zOLIFEPos) 1.00 cor(Intercept,zOLIFENeg) 1.00 cor(directness1,zOLIFENeg) 1.00 cor(zOLIFEPos,zOLIFENeg) 1.00 cor(Intercept,zOLIFEDis) 1.00 cor(directness1,zOLIFEDis) 1.00 cor(zOLIFEPos,zOLIFEDis) 1.00 cor(zOLIFENeg,zOLIFEDis) 1.00 cor(Intercept,zOLIFEImp) 1.00 cor(directness1,zOLIFEImp) 1.00 cor(zOLIFEPos,zOLIFEImp) 1.00 cor(zOLIFENeg,zOLIFEImp) 1.00 cor(zOLIFEDis,zOLIFEImp) 1.00 cor(Intercept,soa1) 1.00 cor(directness1,soa1) 1.00 cor(zOLIFEPos,soa1) 1.00 cor(zOLIFENeg,soa1) 1.00 cor(zOLIFEDis,soa1) 1.00 cor(zOLIFEImp,soa1) 1.00 cor(Intercept,relation1) 1.00 cor(directness1,relation1) 1.00 cor(zOLIFEPos,relation1) 1.00 cor(zOLIFENeg,relation1) 1.00 cor(zOLIFEDis,relation1) 1.00 cor(zOLIFEImp,relation1) 1.00 cor(soa1,relation1) 1.00 cor(Intercept,soa1:relation1) 1.00 cor(directness1,soa1:relation1) 1.00 cor(zOLIFEPos,soa1:relation1) 1.00 cor(zOLIFENeg,soa1:relation1) 1.00 cor(zOLIFEDis,soa1:relation1) 1.00 cor(zOLIFEImp,soa1:relation1) 1.00 cor(soa1,soa1:relation1) 1.00 cor(relation1,soa1:relation1) 1.00 ~targ (Number of levels: 120) Estimate Est.Error l-95% CI u-95% CI Eff.Sample sd(Intercept) 19.44 1.39 16.86 22.34 6256 sd(zOLIFEPos) 1.67 1.02 0.08 3.77 5214 sd(zOLIFENeg) 0.71 0.53 0.03 1.99 15334 sd(zOLIFEDis) 1.93 1.03 0.14 3.96 4655 sd(zOLIFEImp) 2.14 0.97 0.25 3.98 5847 sd(soa1) 3.27 0.80 1.68 4.80 8883 sd(relation1) 3.35 1.27 0.64 5.66 2382 sd(soa1:relation1) 1.78 1.06 0.10 3.89 3909 cor(Intercept,zOLIFEPos) -0.11 0.25 -0.57 0.42 23680 cor(Intercept,zOLIFENeg) -0.00 0.29 -0.56 0.55 35624 cor(zOLIFEPos,zOLIFENeg) 0.02 0.30 -0.56 0.59 29160 cor(Intercept,zOLIFEDis) -0.17 0.24 -0.60 0.34 23485 cor(zOLIFEPos,zOLIFEDis) -0.13 0.30 -0.67 0.49 9219 cor(zOLIFENeg,zOLIFEDis) -0.02 0.30 -0.60 0.56 11903 cor(Intercept,zOLIFEImp) -0.35 0.22 -0.72 0.16 15716 cor(zOLIFEPos,zOLIFEImp) -0.06 0.29 -0.61 0.52 12935 cor(zOLIFENeg,zOLIFEImp) -0.01 0.30 -0.58 0.56 14471 cor(zOLIFEDis,zOLIFEImp) 0.07 0.29 -0.49 0.61 14574 cor(Intercept,soa1) 0.48 0.15 0.16 0.76 20359 cor(zOLIFEPos,soa1) -0.08 0.28 -0.60 0.46 9776 cor(zOLIFENeg,soa1) -0.04 0.30 -0.59 0.54 9011 cor(zOLIFEDis,soa1) -0.29 0.27 -0.74 0.30 8052 cor(zOLIFEImp,soa1) -0.14 0.26 -0.63 0.39 12922 cor(Intercept,relation1) -0.34 0.19 -0.68 0.06 13891 cor(zOLIFEPos,relation1) -0.01 0.28 -0.55 0.54 7577 cor(zOLIFENeg,relation1) -0.03 0.30 -0.59 0.55 6254 cor(zOLIFEDis,relation1) -0.03 0.28 -0.55 0.52 8516 cor(zOLIFEImp,relation1) 0.10 0.27 -0.44 0.60 9866 cor(soa1,relation1) -0.11 0.24 -0.57 0.38 11889 cor(Intercept,soa1:relation1) 0.02 0.24 -0.46 0.48 28977 cor(zOLIFEPos,soa1:relation1) -0.12 0.30 -0.66 0.49 10348 cor(zOLIFENeg,soa1:relation1) -0.01 0.30 -0.58 0.57 12153 cor(zOLIFEDis,soa1:relation1) -0.04 0.29 -0.59 0.53 15555 cor(zOLIFEImp,soa1:relation1) 0.09 0.29 -0.49 0.61 13654 cor(soa1,soa1:relation1) 0.03 0.27 -0.50 0.55 19615 cor(relation1,soa1:relation1) 0.17 0.29 -0.44 0.67 10989 Rhat sd(Intercept) 1.00 sd(zOLIFEPos) 1.00 sd(zOLIFENeg) 1.00 sd(zOLIFEDis) 1.00 sd(zOLIFEImp) 1.00 sd(soa1) 1.00 sd(relation1) 1.00 sd(soa1:relation1) 1.00 cor(Intercept,zOLIFEPos) 1.00 cor(Intercept,zOLIFENeg) 1.00 cor(zOLIFEPos,zOLIFENeg) 1.00 cor(Intercept,zOLIFEDis) 1.00 cor(zOLIFEPos,zOLIFEDis) 1.00 cor(zOLIFENeg,zOLIFEDis) 1.00 cor(Intercept,zOLIFEImp) 1.00 cor(zOLIFEPos,zOLIFEImp) 1.00 cor(zOLIFENeg,zOLIFEImp) 1.00 cor(zOLIFEDis,zOLIFEImp) 1.00 cor(Intercept,soa1) 1.00 cor(zOLIFEPos,soa1) 1.00 cor(zOLIFENeg,soa1) 1.00 cor(zOLIFEDis,soa1) 1.00 cor(zOLIFEImp,soa1) 1.00 cor(Intercept,relation1) 1.00 cor(zOLIFEPos,relation1) 1.00 cor(zOLIFENeg,relation1) 1.00 cor(zOLIFEDis,relation1) 1.00 cor(zOLIFEImp,relation1) 1.00 cor(soa1,relation1) 1.00 cor(Intercept,soa1:relation1) 1.00 cor(zOLIFEPos,soa1:relation1) 1.00 cor(zOLIFENeg,soa1:relation1) 1.00 cor(zOLIFEDis,soa1:relation1) 1.00 cor(zOLIFEImp,soa1:relation1) 1.00 cor(soa1,soa1:relation1) 1.00 cor(relation1,soa1:relation1) 1.00 Population-Level Effects: Estimate Est.Error l-95% CI u-95% CI Intercept 614.98 5.19 604.72 624.91 directness1 8.27 4.64 -0.87 17.32 zOLIFEPos -0.27 4.72 -9.53 9.07 zOLIFENeg -1.74 4.59 -10.81 7.13 zOLIFEDis 0.84 4.89 -8.73 10.42 zOLIFEImp 5.56 4.98 -4.30 15.29 soa1 7.92 1.81 4.38 11.49 relation1 -7.30 0.87 -9.02 -5.58 directness1:zOLIFEPos -0.22 4.75 -9.62 9.07 directness1:zOLIFENeg -1.72 4.69 -10.83 7.41 directness1:zOLIFEDis 4.52 4.96 -5.20 14.22 directness1:zOLIFEImp -0.09 4.93 -9.59 9.55 directness1:soa1 0.81 1.82 -2.78 4.37 zOLIFEPos:soa1 0.25 1.93 -3.51 4.03 zOLIFENeg:soa1 1.22 1.88 -2.45 4.86 zOLIFEDis:soa1 -1.05 2.11 -5.19 3.08 zOLIFEImp:soa1 5.00 2.08 0.91 9.12 directness1:relation1 -4.64 0.79 -6.21 -3.08 zOLIFEPos:relation1 0.52 0.80 -1.05 2.07 zOLIFENeg:relation1 -0.45 0.77 -1.96 1.07 zOLIFEDis:relation1 -1.01 0.88 -2.74 0.71 zOLIFEImp:relation1 0.50 0.85 -1.15 2.17 soa1:relation1 -0.28 0.71 -1.64 1.10 directness1:zOLIFEPos:soa1 1.06 1.91 -2.71 4.84 directness1:zOLIFENeg:soa1 -0.39 1.89 -4.10 3.36 directness1:zOLIFEDis:soa1 1.09 2.07 -2.93 5.20 directness1:zOLIFEImp:soa1 -0.87 2.05 -4.91 3.18 directness1:zOLIFEPos:relation1 -0.23 0.79 -1.77 1.32 directness1:zOLIFENeg:relation1 -0.56 0.77 -2.08 0.94 directness1:zOLIFEDis:relation1 -0.89 0.87 -2.58 0.82 directness1:zOLIFEImp:relation1 2.12 0.84 0.47 3.76 directness1:soa1:relation1 -0.85 0.67 -2.15 0.47 zOLIFEPos:soa1:relation1 -0.30 0.71 -1.69 1.07 zOLIFENeg:soa1:relation1 -0.43 0.69 -1.80 0.92 zOLIFEDis:soa1:relation1 -0.25 0.78 -1.80 1.26 zOLIFEImp:soa1:relation1 0.32 0.75 -1.15 1.82 directness1:zOLIFEPos:soa1:relation1 0.60 0.71 -0.80 2.01 directness1:zOLIFENeg:soa1:relation1 -0.79 0.69 -2.15 0.56 directness1:zOLIFEDis:soa1:relation1 -0.82 0.78 -2.32 0.73 directness1:zOLIFEImp:soa1:relation1 -0.17 0.75 -1.64 1.34 Eff.Sample Rhat Intercept 1672 1.00 directness1 2306 1.00 zOLIFEPos 3116 1.00 zOLIFENeg 2385 1.00 zOLIFEDis 2749 1.00 zOLIFEImp 2682 1.00 soa1 4585 1.00 relation1 15117 1.00 directness1:zOLIFEPos 2320 1.00 directness1:zOLIFENeg 2535 1.00 directness1:zOLIFEDis 2340 1.00 directness1:zOLIFEImp 2310 1.00 directness1:soa1 4441 1.00 zOLIFEPos:soa1 4770 1.00 zOLIFENeg:soa1 4622 1.00 zOLIFEDis:soa1 5098 1.00 zOLIFEImp:soa1 5064 1.00 directness1:relation1 15464 1.00 zOLIFEPos:relation1 15764 1.00 zOLIFENeg:relation1 14732 1.00 zOLIFEDis:relation1 13892 1.00 zOLIFEImp:relation1 16031 1.00 soa1:relation1 16522 1.00 directness1:zOLIFEPos:soa1 5085 1.00 directness1:zOLIFENeg:soa1 4668 1.00 directness1:zOLIFEDis:soa1 4696 1.00 directness1:zOLIFEImp:soa1 4421 1.00 directness1:zOLIFEPos:relation1 14558 1.00 directness1:zOLIFENeg:relation1 16477 1.00 directness1:zOLIFEDis:relation1 15208 1.00 directness1:zOLIFEImp:relation1 13464 1.00 directness1:soa1:relation1 18293 1.00 zOLIFEPos:soa1:relation1 17205 1.00 zOLIFENeg:soa1:relation1 15882 1.00 zOLIFEDis:soa1:relation1 16886 1.00 zOLIFEImp:soa1:relation1 16775 1.00 directness1:zOLIFEPos:soa1:relation1 16601 1.00 directness1:zOLIFENeg:soa1:relation1 18263 1.00 directness1:zOLIFEDis:soa1:relation1 15892 1.00 directness1:zOLIFEImp:soa1:relation1 16034 1.00 Family Specific Parameters: Estimate Est.Error l-95% CI u-95% CI Eff.Sample Rhat sigma 49.41 0.55 48.32 50.49 26804 1.00 beta 141.45 0.98 139.52 143.39 35720 1.00 Samples were drawn using sampling(NUTS). For each parameter, Eff.Sample is a crude measure of effective sample size, and Rhat is the potential scale reduction factor on split chains (at convergence, Rhat = 1). > prior_summary(all.exgauss.n.1k.500.n.0.10.wid.2) prior class coef group 1 normal(1000, 500) Intercept 2 lkj_corr_cholesky(2) L 3 L part 4 L prime 5 L targ 6 normal(0, 10) b 7 b directness1 8 b directness1:relation1 9 b directness1:soa1 10 b directness1:soa1:relation1 11 b directness1:zOLIFEDis 12 b directness1:zOLIFEDis:relation1 13 b directness1:zOLIFEDis:soa1 14 b directness1:zOLIFEDis:soa1:relation1 15 b directness1:zOLIFEImp 16 b directness1:zOLIFEImp:relation1 17 b directness1:zOLIFEImp:soa1 18 b directness1:zOLIFEImp:soa1:relation1 19 b directness1:zOLIFENeg 20 b directness1:zOLIFENeg:relation1 21 b directness1:zOLIFENeg:soa1 22 b directness1:zOLIFENeg:soa1:relation1 23 b directness1:zOLIFEPos 24 b directness1:zOLIFEPos:relation1 25 b directness1:zOLIFEPos:soa1 26 b directness1:zOLIFEPos:soa1:relation1 27 b relation1 28 b soa1 29 b soa1:relation1 30 b zOLIFEDis 31 b zOLIFEDis:relation1 32 b zOLIFEDis:soa1 33 b zOLIFEDis:soa1:relation1 34 b zOLIFEImp 35 b zOLIFEImp:relation1 36 b zOLIFEImp:soa1 37 b zOLIFEImp:soa1:relation1 38 b zOLIFENeg 39 b zOLIFENeg:relation1 40 b zOLIFENeg:soa1 41 b zOLIFENeg:soa1:relation1 42 b zOLIFEPos 43 b zOLIFEPos:relation1 44 b zOLIFEPos:soa1 45 b zOLIFEPos:soa1:relation1 46 normal(0, 10) beta 47 normal(0, 10) sd 48 sd part 49 sd Intercept part 50 sd relation1 part 51 sd soa1 part 52 sd soa1:relation1 part 53 sd prime 54 sd Intercept prime 55 sd directness1 prime 56 sd relation1 prime 57 sd soa1 prime 58 sd soa1:relation1 prime 59 sd zOLIFEDis prime 60 sd zOLIFEImp prime 61 sd zOLIFENeg prime 62 sd zOLIFEPos prime 63 sd targ 64 sd Intercept targ 65 sd relation1 targ 66 sd soa1 targ 67 sd soa1:relation1 targ 68 sd zOLIFEDis targ 69 sd zOLIFEImp targ 70 sd zOLIFENeg targ 71 sd zOLIFEPos targ 72 normal(0, 10) sigma resp dpar nlpar bound 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 > > # -- save model data > saveRDS(all.exgauss.n.1k.500.n.0.10.wid.2, "all.exgauss.n.1k.500.n.0.10.wid.2-2x-231019.rds") > > > > > > > > > > > proc.time() user system elapsed 694863.624 167.934 158062.465