Predictions for sequence: BFRF1 3' UTR Calculation parameters: Genome: Human (hg38) Selected motifs: All Human/Mouse motifs Stringency level: High Conservation filter: Off ====================================================================================================================== doi: 10.1093/nar/gku406 Sequence Position: First nucleotide of RBP motif on the input sequence Motif: The binding motif for a given RBP K-mer: The sequence present in the input sequence which is recognized as an RBP motif Z-score: Measures the deviation of the site’s WR (weighted rank) score from the mean score calculated using the genome-specific background P-value: Represents the probability of obtaining a specific Z-score Protein: CNOT4(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 215 gacaga gacaga 2.413 7.91e-03 Protein: CPEB4(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 478 uuuuuu guuuuu 2.504 6.14e-03 Protein: CUG-BP(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 42 ugcug ggcug 2.469 6.77e-03 67 ugcug ugcug 2.920 1.75e-03 70 ugcug ugccg 2.248 1.23e-02 132 ugcug ugcuu 1.779 3.76e-02 157 ugcug ugcgg 2.150 1.58e-02 169 ugcug uccug 2.044 2.05e-02 172 ugcug ugcgg 2.150 1.58e-02 196 ugcug uccug 2.000 2.27e-02 211 ugcug ugcgg 1.965 2.47e-02 234 ugcug ugcuc 1.655 4.90e-02 323 ugcug uggug 2.142 1.61e-02 335 ugcug ugcgg 2.133 1.65e-02 339 ugcug ggcug 2.142 1.61e-02 342 ugcug ugccg 2.133 1.65e-02 431 ugcug ugcuu 1.743 4.07e-02 449 ugcug agcug 1.876 3.03e-02 474 ugcug ugaug 1.655 4.90e-02 512 ugcug uucug 1.965 2.47e-02 526 ugcug uucug 2.071 1.92e-02 529 ugcug ugcua 1.991 2.32e-02 545 ugcug ugcag 2.000 2.27e-02 Protein: ENOX1(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 213 hrkacag cggacag 2.906 1.83e-03 Protein: FUS(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 569 cgcgc ggcgc 2.735 3.12e-03 577 cgcgc cgcgc 2.735 3.12e-03 Protein: HNRNPC(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 476 huuuuuk auguuuu 2.420 7.76e-03 478 huuuuuk guuuuuc 2.455 7.04e-03 Protein: HNRNPCL1(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 476 huuuuuk auguuuu 2.404 8.11e-03 478 huuuuuk guuuuuc 2.430 7.55e-03 Protein: HNRNPF(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 163 gggug cggug 2.509 6.05e-03 175 gggug ggggg 2.509 6.05e-03 176 gggug ggggg 2.509 6.05e-03 178 gggug gggug 2.955 1.56e-03 323 gggug uggug 2.062 1.96e-02 330 gggug cggug 2.062 1.96e-02 332 gggug gugug 2.062 1.96e-02 339 gggug ggcug 2.062 1.96e-02 Protein: HNRNPH1(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 535 gargag gaagag 2.940 1.64e-03 Protein: HNRNPH2(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 397 gggaggg gggaggc 2.389 8.45e-03 Protein: HNRNPK(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 380 ccawmcc ccaagcc 3.362 3.87e-04 Protein: MATR3(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 110 maucuur ccucuug 2.230 1.29e-02 Protein: MBNL1(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 67 ygcuky ugcugc 3.088 1.01e-03 70 ygcuky ugccgc 2.657 3.94e-03 80 ygcuky cgcggc 2.696 3.51e-03 108 ygcuky cgccuc 2.294 1.09e-02 129 ygcuky cccugc 2.294 1.09e-02 132 gcuugc ugcuug 3.545 1.96e-04 157 ygcuky ugcggc 2.284 1.12e-02 169 ygcuky uccugc 2.088 1.84e-02 196 ygcuky uccugu 1.657 4.88e-02 234 ygcuky ugcucc 1.657 4.88e-02 297 ygcuky uccugu 1.686 4.59e-02 330 ygcuky cggugu 2.284 1.12e-02 339 ygcuky ggcugc 2.402 8.15e-03 342 ygcuky ugccgu 2.392 8.38e-03 358 ygcuky cgcguu 2.392 8.38e-03 374 ygcuky ggcugc 1.892 2.92e-02 428 ygcuky cccugc 2.304 1.06e-02 431 ygcuky ugcuuc 2.706 3.41e-03 474 ygcuky ugaugu 1.686 4.59e-02 526 ygcuky uucugc 2.069 1.93e-02 529 ygcuky ugcuac 2.078 1.89e-02 563 ygcuky ugccuc 1.676 4.69e-02 Protein: PCBP3(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 414 uuuycc uuuucc 2.568 5.11e-03 Protein: PTBP1(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 112 ucuu ucuu 2.446 7.22e-03 124 ucuu ucau 1.884 2.98e-02 133 ucuu gcuu 2.027 2.13e-02 344 cucucu ccgucu 2.018 2.18e-02 346 cucucu gucucu 2.580 4.94e-03 348 cucucu cucuau 2.580 4.94e-03 350 cucucu cuauca 2.027 2.13e-02 Protein: RALY(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 479 uuuuuub uuuuucg 2.634 4.22e-03 Protein: RBFOX1(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 153 wgcaugm ugcaugc 2.500 6.21e-03 Protein: RBM38(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 332 kkguguk gugugcg 3.359 3.91e-04 Protein: RBM4(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 334 gcgcgss gugcggg 2.319 1.02e-02 Protein: RBM45(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 276 gacgamv gacgagc 2.867 2.07e-03 Protein: RBM8A(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 31 rygcgcb gcgcccg 3.405 3.31e-04 270 rygcgcb gcccgcg 1.676 4.69e-02 Protein: SAMD4A(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 43 gckgghm gcuggcg 2.395 8.31e-03 Protein: SRSF1(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 262 crsmsgw cagagga 2.389 8.45e-03 Protein: SRSF2(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 67 ugcygyy ugcugcc 3.374 3.70e-04 70 ugcygyy ugccgca 2.899 1.87e-03 105 ugcygyy ucccgcc 2.737 3.10e-03 119 ugcygyy ugccauc 2.707 3.39e-03 157 ugcygyy ugcggcc 2.172 1.49e-02 227 ugcygyy agccguu 1.949 2.56e-02 297 ugcygyy uccuguu 2.646 4.07e-03 316 ugcygyy ugccacc 2.828 2.34e-03 339 ugcygyy ggcugcc 2.848 2.20e-03 342 ugcygyy ugccguc 2.586 4.85e-03 526 ugcygyy uucugcu 2.172 1.49e-02 Protein: SRSF3(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 76 wcwwc acaac 1.941 2.61e-02 80 cuckucy cgcggcc 2.000 2.27e-02 93 cuckucy cucgacc 2.700 3.47e-03 106 cuckucy cccgccu 2.380 8.66e-03 108 cuckucy cgccucu 2.380 8.66e-03 111 cuckucy cucuugg 2.380 8.66e-03 123 cuckucy aucaucc 2.020 2.17e-02 124 wcwwc ucauc 1.941 2.61e-02 129 cuckucy cccugcu 2.030 2.12e-02 141 cuckucy cccgacc 1.990 2.33e-02 149 cuckucy cacuugc 1.940 2.62e-02 165 cuckucy guggucc 1.780 3.75e-02 283 cuckucy cucaccu 2.530 5.70e-03 288 cuckucy cuguucu 3.070 1.07e-03 291 cuckucy uucuccu 2.530 5.70e-03 293 cuckucy cuccucc 3.070 1.07e-03 296 cuckucy cuccugu 2.530 5.70e-03 413 cuckucy auuuucc 1.860 3.14e-02 428 cuckucy cccugcu 1.850 3.22e-02 431 cuckucy ugcuucc 1.850 3.22e-02 505 cuckucy cugguau 1.850 3.22e-02 517 wcwwc acauc 2.863 2.10e-03 523 cuckucy caguucu 1.860 3.14e-02 526 cuckucy uucugcu 1.860 3.14e-02 Protein: SRSF5(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 110 yywcwsg ccucuug 1.828 3.38e-02 261 yywcwsg ccagagg 2.269 1.16e-02 282 yywcwsg ccucacc 2.505 6.12e-03 303 yywcwsg uuagagg 2.312 1.04e-02 353 yywcwsg ucagacg 1.882 2.99e-02 391 yywcwsg cuccagg 1.882 2.99e-02 479 yywcwsg uuuuucg 2.301 1.07e-02 481 yywcwsg uuucggg 2.301 1.07e-02 511 yywcwsg uuucuga 1.882 2.99e-02 554 yywcwsg cuuuugg 1.882 2.99e-02 Protein: SRSF7(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 264 acgacg gaggac 3.705 1.06e-04 265 wggacra aggacgc 1.957 2.52e-02 267 acgacg gacgcc 3.705 1.06e-04 276 acgacg gacgag 3.449 2.81e-04 549 acgacg gaggac 2.962 1.53e-03 Protein: TARDBP(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 324 ugugug ggugag 2.183 1.45e-02 326 ugugug ugagcg 2.156 1.55e-02 331 ugugug ggugug 2.725 3.22e-03 333 ugugug ugugcg 2.725 3.22e-03 335 ugugug ugcggg 2.156 1.55e-02 Protein: TIA1(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 479 uuuuubk uuuuucg 2.755 2.93e-03 Protein: TRA2A(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 535 gaagaggaag gaagaguacg 1.739 4.10e-02 Protein: TRA2B(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 476 aaguguu auguuuu 1.821 3.43e-02 536 aaguguu aagagua 1.726 4.22e-02 Protein: U2AF2(Hs/Mm) Sequence Position Motif K-mer Z-score P-value 413 uuuuuyc auuuucc 1.867 3.10e-02 478 uuuuuyc guuuuuc 2.295 1.09e-02 479 uuuuuyc uuuuucg 2.171 1.50e-02