Package,Use
APE,"Multivariate analysis, PcoA"
VEGAN ,Test the statistical significance of the clusters w/ PERMANOVA (Permutational Multivariate Analysis of Variance Using Distance Matrices)
PSYCH,Functions for multivariate analysis 
DENDEXTEND,Cut a Tree (Dendrogram/hclust/phylo) into Groups of Data from the cluster dendrogram results (clust_result); perform tanglegram
PVCLUST,Creates a tree to represent the ecomorpho groups that exist in our matrix data.s
DBI,To communicate with sqlite database
GGPLOT 2,To plot figures
GGNEWSCALE,To have more than one colour or fill scale in a plot using ggplot2