Specifications ============== Sequence source file: "Unigene" Definement of microsatellites (unit size / minimum number of repeats): (1/10) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Unigene Number 45394 Unigene Size 49110414 SSRs Number 8314 Unigene Number(SSR>=1) 6825 Unigene Number(SSR>=2) 1202 Compound SSRs Number 559 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 3806 2 3039 3 1178 4 101 5 83 6 107 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 total A - - - - - 540 250 173 94 61 55 37 21 13 6 3 1 2 1 1 1 1259 C - - - - - 5 9 5 7 4 2 2 1 1 1 37 G - - - - - 2 2 1 5 T - - - - - 1095 457 296 161 156 107 86 55 31 25 9 7 6 4 6 1 1 2 2505 AC - 48 30 11 11 7 6 3 1 2 119 AG - 157 94 68 28 13 12 10 7 5 13 4 2 2 1 1 1 1 419 AT - 66 34 22 12 12 8 3 4 3 4 1 2 1 172 CA - 44 21 12 5 9 6 3 2 3 7 3 1 116 CT - 326 184 104 64 36 36 21 19 12 19 9 3 4 1 1 2 1 1 843 GA - 161 81 43 23 23 10 10 4 6 11 1 2 1 1 377 GC - 1 1 1 3 GT - 28 11 9 5 2 2 1 2 60 TA - 68 36 19 14 7 5 5 3 3 4 1 1 1 1 168 TC - 261 145 74 46 25 20 5 15 12 10 8 2 3 1 2 1 1 631 TG - 50 23 26 13 6 3 3 4 1 1 1 131 AAC 5 1 2 8 AAG 42 8 6 1 2 59 AAT 11 7 1 1 1 1 1 23 ACA 7 2 2 11 ACC 8 2 5 2 1 18 ACG 1 1 2 ACT 3 3 AGA 27 12 5 1 1 1 1 48 AGC 7 3 3 1 1 15 AGG 8 5 1 14 ATA 6 1 1 8 ATC 10 4 1 15 ATG 21 4 2 27 ATT 16 4 7 3 1 1 32 CAA 3 1 2 1 1 8 CAC 21 7 4 2 2 1 37 CAG 14 2 1 2 19 CAT 6 1 3 10 CCA 32 16 11 4 3 4 70 CCG 33 10 6 2 1 52 CCT 14 4 1 1 1 21 CGA 7 7 CGC 16 4 3 2 25 CGG 32 7 2 1 42 CGT 1 1 2 CTA 2 2 CTC 26 4 2 2 34 CTG 4 1 1 6 CTT 9 6 1 2 18 GAA 45 7 5 1 1 1 60 GAC 6 2 8 GAG 21 7 3 1 1 33 GAT 32 5 1 1 39 GCA 9 4 2 1 16 GCC 15 6 3 1 2 27 GCG 9 2 2 1 14 GCT 4 3 1 8 GGA 7 1 5 13 GGC 21 5 5 31 GGT 10 7 1 2 20 GTA 1 1 GTC 1 1 2 GTG 8 2 2 12 GTT 2 1 3 TAA 4 1 5 TAC 2 1 3 TAG 2 2 TAT 10 2 12 TCA 12 1 13 TCC 12 4 2 1 19 TCG 3 3 TCT 14 9 3 2 28 TGA 33 6 1 1 1 1 43 TGC 6 2 1 9 TGG 17 5 2 24 TGT 3 1 4 TTA 19 9 5 2 1 1 1 1 1 40 TTC 24 13 2 2 1 1 43 TTG 4 2 1 7 AAAG 3 3 AAAT 1 1 2 AATA 1 1 AATT 2 2 ACAT 1 1 ACTC 1 1 2 AGAA 2 2 AGAC 1 1 AGAT 1 1 AGTG 1 1 ATAA 4 4 ATAC 4 1 5 ATAG 1 1 2 ATCA 1 1 ATGA 1 1 ATGT 1 1 ATTA 1 1 ATTT 3 1 4 CACT 1 1 CATA 1 1 CATC 1 1 CCTT 1 1 CTAC 1 1 CTCA 2 1 3 CTCC 1 1 CTTT 1 1 2 4 GAAA 1 1 GAAG 1 1 GGAT 1 1 GTCT 1 1 GTGA 1 1 TAAT 2 2 TACC 1 1 TATC 1 1 TATG 1 1 1 1 4 TATT 2 1 1 4 TCAA 1 1 TCAC 1 1 TCTT 2 1 3 TGAG 1 1 TGTT 2 2 TTAA 1 1 2 TTAT 4 1 1 6 TTCA 1 1 TTCT 2 1 3 TTTA 4 2 1 7 TTTC 6 2 8 TTTG 1 1 AAAAC 2 2 AAGAG 2 1 3 AAGGC 1 1 ACCAA 1 1 ACCCC 1 1 ACTAG 1 1 ACTCC 1 1 AGAAG 2 2 AGAGA 2 2 AGAGG 1 1 AGGAG 1 1 AGGTA 1 1 AGTGT 1 1 ATACA 1 1 ATGAG 1 1 ATTAG 1 1 ATTTA 1 1 CAACA 1 1 CACAA 1 1 CACCC 2 1 3 CAGCT 1 1 CCACC 1 1 CCCCA 1 1 CCCTC 1 1 CCCTG 1 1 CCCTT 1 1 CCTCC 2 1 3 CCTCT 1 1 CCTTC 2 1 3 CTACC 1 1 CTCCC 1 1 CTCCT 1 1 CTCTC 1 1 2 CTCTT 1 1 2 CTGAT 1 1 CTGGT 1 1 CTTCT 1 1 GAAGA 4 1 5 GAGGA 1 1 GGAAT 1 1 GGCTC 1 1 GTTTT 1 1 TAAGA 1 1 TACAC 1 1 TCATG 1 1 TCCTC 1 1 TCTCT 2 2 TCTTC 3 3 TCTTT 1 1 TGGAT 1 1 TTCTG 2 2 TTCTT 1 1 TTGCC 1 1 TTGGA 1 1 TTTAT 1 1 TTTTC 3 1 2 6 TTTTG 1 1 AAGAGA 1 1 AAGATA 1 1 AATCCT 1 1 AATTCC 1 1 ACATAC 1 1 ACCCAA 1 1 ACCCTA 1 1 ACCTGT 1 1 ACTACC 1 1 ACTATT 1 1 ACTCCG 1 1 AGAAGT 1 1 AGAGAA 1 1 AGAGGC 1 1 AGAGTG 1 1 AGATAG 1 1 AGCACC 1 1 AGGGCA 1 1 AGTAGA 1 1 ATCTTC 1 1 ATGCCA 1 1 ATGGAC 1 1 ATTAAT 1 1 ATTACC 1 1 ATTCCG 1 1 ATTTGA 1 1 CAACTC 1 1 CAATCC 1 1 CAATTC 1 1 CACACC 1 1 CACCAT 1 1 CAGCCT 1 1 CCACCG 1 1 CCACCT 1 2 3 CCACTC 1 1 CCCACA 1 1 CCCCAA 1 1 CCCTCA 1 1 CCTCCA 1 1 CCTCCG 1 1 CCTGAA 1 1 CCTGAG 1 1 CGATCA 1 1 CGCCAT 1 1 CGCCCG 1 1 CGCCTC 1 1 CTAATG 1 1 CTACTC 1 1 CTAGTT 1 1 CTCCAC 2 2 CTCCCT 1 1 CTCCGC 1 1 CTCCGT 1 1 CTTCTA 1 1 CTTCTG 1 1 GAAAAA 1 1 GAAAGT 1 1 GAAGAT 1 1 1 3 GAATGT 1 1 GAGGAA 2 1 3 GAGGGA 1 1 GCCCTA 1 1 GCCGTC 1 1 GCCTCA 1 1 GCCTCC 2 2 GCCTTC 1 1 GCTGGT 1 1 GGAGGC 1 1 GGCTAT 1 1 GGGAGT 1 1 GGTAAA 1 1 GGTTCT 1 1 GTGAAT 1 1 GTGATG 1 1 TAGAGA 1 1 TAGATC 1 1 TAGGGC 1 1 TCAATT 1 1 TCACTC 1 1 1 3 TCATCC 1 1 TCCCTC 1 1 TCTCCC 1 1 TCTTCG 1 1 TGAGAG 1 1 TGCAAG 1 1 TGGAAA 1 1 TGGTAA 1 1 TGGTCT 1 1 TGGTGA 1 1 TGTGGA 1 1 TTCTTT 1 1 TTGATT 1 1 TTGCTC 1 1 TTTCCC 1 1 TTTCCG 1 1 TTTTCT 1 1 TTTTTC 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 total A/T - - - - - 1635 707 469 255 217 162 123 76 44 31 9 10 7 6 6 2 1 3 1 3764 C/G - - - - - 7 11 6 7 4 2 2 1 1 1 42 AC/GT - 170 85 58 34 24 17 10 8 5 10 4 1 426 AG/CT - 905 504 289 161 97 78 46 45 35 53 22 9 9 2 2 4 1 1 1 2 1 2 1 2270 AT/AT - 134 70 41 26 19 13 8 7 6 8 1 2 2 1 1 1 340 CG/CG - 1 1 1 3 AAC/GTT 24 8 6 1 1 1 41 AAG/CTT 161 55 22 7 4 3 1 1 1 1 256 AAT/ATT 66 23 14 6 2 3 1 2 1 1 1 120 ACC/GGT 96 39 25 10 5 6 181 ACG/CGT 19 5 24 ACT/AGT 10 1 11 AGC/CTG 44 14 8 1 4 1 1 73 AGG/CCT 88 25 11 4 4 1 1 134 ATC/ATG 114 21 5 3 3 1 147 CCG/CGG 126 34 21 3 4 2 1 191 AAAC/GTTT 3 3 AAAG/CTTT 16 4 4 24 AAAT/ATTT 19 6 2 1 28 AAGG/CCTT 1 1 2 AATC/ATTG 1 1 2 AATG/ATTC 1 1 2 AATT/AATT 4 2 1 7 ACAG/CTGT 2 2 ACAT/ATGT 7 3 1 1 12 ACCT/AGGT 1 1 2 ACTC/AGTG 5 1 2 2 10 AGAT/ATCT 3 1 4 AGGG/CCCT 1 1 ATCC/ATGG 2 2 AAAAC/GTTTT 3 1 4 AAAAG/CTTTT 5 1 2 8 AAAAT/ATTTT 1 1 AAACC/GGTTT 1 1 AAATT/AATTT 1 1 AACAC/GTGTT 2 2 AACAG/CTGTT 2 2 AAGAG/CTCTT 15 4 1 20 AAGAT/ATCTT 1 1 AAGGC/CCTTG 2 2 AAGGG/CCCTT 2 2 4 AAGGT/ACCTT 1 1 AATAC/ATTGT 1 1 AATCC/ATTGG 2 2 AATCT/AGATT 1 1 AATGG/ATTCC 1 1 ACACT/AGTGT 1 1 2 ACATG/ATGTC 1 1 ACCAG/CTGGT 1 1 ACCCC/GGGGT 5 1 6 ACCCT/AGGGT 1 1 ACTAG/AGTCT 1 1 ACTCC/AGTGG 1 1 AGAGG/CCTCT 7 1 8 AGATC/ATCTG 1 1 AGATG/ATCTC 1 1 AGCCG/CGGCT 1 1 AGCTC/AGCTG 1 1 AGGGC/CCCTG 1 1 AGGGG/CCCCT 4 1 5 AAAAAG/CTTTTT 3 1 4 AAAATC/ATTTTG 1 1 AAACCC/GGGTTT 1 1 AAACGG/CCGTTT 1 1 AAAGAG/CTCTTT 2 2 AAAGAT/ATCTTT 1 1 AAAGGG/CCCTTT 1 1 AAAGGT/ACCTTT 1 1 AAAGTG/ACTTTC 1 1 AAATGG/ATTTCC 1 1 AAATTC/AATTTG 1 1 AAATTG/AATTTC 1 1 AACCAG/CTGGTT 1 1 AACCCC/GGGGTT 1 1 AACCCT/AGGGTT 1 1 AACCTG/AGGTTC 1 1 AACTAG/AGTTCT 1 1 AACTCC/AGTTGG 1 1 AAGACC/CTTGGT 1 1 AAGACG/CGTCTT 1 1 AAGAGC/CTCTTG 1 1 AAGAGG/CCTCTT 2 1 3 AAGATG/ATCTTC 1 2 1 4 AAGCAG/CTGCTT 1 1 AAGGCG/CCTTCG 1 1 AAGGGC/CCCTTG 1 1 AAGTAG/ACTTCT 3 3 AAGTGC/ACTTGC 1 1 AATAGT/ACTATT 1 1 AATATT/AATATT 1 1 AATCCC/ATTGGG 1 1 AATCCT/AGGATT 1 1 AATCGG/ATTCCG 1 1 AATGCC/ATTGGC 1 1 AATGCT/AGCATT 1 1 AATGGT/ACCATT 2 2 AATGTG/ACATTC 1 1 2 AATTCC/AATTGG 2 2 ACACAT/ATGTGT 1 1 ACACCC/GGGTGT 1 1 2 ACAGGT/ACCTGT 1 1 ACATCC/ATGTGG 1 1 ACATGG/ATGTCC 1 1 ACCACT/AGTGGT 1 1 ACCAGC/CTGGTG 1 1 2 ACCATC/ATGGTG 3 3 ACCCTC/AGGGTG 1 1 ACCGCC/CGGTGG 1 1 ACCTCC/AGGTGG 4 2 6 ACGATC/ATCGTG 1 1 ACGGAG/CCGTCT 1 1 ACGGCG/CCGTCG 1 1 ACTCCC/AGTGGG 1 1 2 ACTCCG/AGTCGG 1 1 ACTCCT/AGGAGT 1 1 ACTCTC/AGAGTG 2 2 1 5 AGAGAT/ATCTCT 2 2 AGAGGC/CCTCTG 1 1 AGAGGG/CCCTCT 4 4 AGATCT/AGATCT 1 1 AGCCAT/ATGGCT 1 1 AGCCCT/AGGGCT 2 2 AGCCTC/AGGCTG 1 1 2 AGCCTG/AGGCTC 1 1 AGGATG/ATCCTC 1 1 AGGCGG/CCGCCT 4 2 6 ATCGCC/ATGGCG 1 1 CCCGCG/CGCGGG 1 1