Supplementary material,,,,,,,,
Comparative proteomic analysis for revealing the advantage mechanisms of Salt-tolerant tomato (Solanum lycoperscium),,,,,,,,
"Qiang Wang 1,2, ","Baike Wang1, 2,"," Huifang Liu 2, "," Hongwei Han 2,","Hongmei Zhuang 2, "," Juan Wang 2, ","Tao Yang 2,","Hao Wang 2*, ", Yong Qin 1*
"1College ofHorticulture£¬Xinjiang Agricultural University,Urumqi 830052,China ;",,,,,,,"2Institute of Horticulture Crops, Xinjiang Academy of Agricultural Sciences, Urumqi 830091, China;",
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"*Corresponding author:Hao Wang,Yong Qin, E-mail: wanghao183@163. com, 352167610@ qq.com",,,,,,,,
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Supplementary Table 1.The primer information of qRT-PCR,,,,,,,,
Accession,Forward primer£¨5¡¯-3¡¯£©,,,,Reverse primer£¨5¡¯-3¡¯£©,,,
A0A0C6G3Q8,TGATAACGGTCTGTACGAGCAATG,,,,ACTTCCTTCTCTGTCTTCCTTCCT,,,
A0A3Q7J2V8,ATTGGTGCTGTGCTTGTAAGTGA,,,,CACGCAACAGGATGTCCAGAA,,,
A0A3Q7IRF5,AGATCCACCAAGTCAGCTACCAT,,,,AGTCCACCAAGAACATCACCTAGT,,,
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Supplementary Table 2. Base data of TMT proteomics,,,,,,,,
Category,,Number,,,,,,
Total spectrum,,642315,,,,,,
Number of Peptides,,112063,,,,,,
Number of Unique peptides,,101322,,,,,,
 Number of Identified proteins               ,,7663,,,,,,
Quantifiable proteins,,6501,,,,,,
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Supplementary Table 3.  Gene ontology enrichment for the DAPs (top 30),,,,,,,,
ID,Class,,Descrption,,,,,P-value
GO:0006950,Biological Process,,response to stress,,,,,4.38E-07
GO:0005576,Cellular Component,,extracellular region,,,,,5.04E-07
GO:1901136,Biological Process,,carbohydrate derivative catabolic process,,,,,3.29E-06
GO:0072593,Biological Process,,reactive oxygen species metabolic process,,,,,4.97E-06
GO:0020037,Molecular Function,,heme binding,,,,,1.00E-05
GO:0044248,Biological Process,,cellular catabolic process,,,,,1.57E-05
GO:0042743,Biological Process,,hydrogen peroxide metabolic process,,,,,2.35E-05
GO:0042744,Biological Process,,hydrogen peroxide catabolic process,,,,,2.35E-05
GO:0006260,Biological Process,,DNA replication,,,,,2.77E-05
GO:0046906,Molecular Function,,tetrapyrrole binding,,,,,4.47E-05
GO:0050896,Biological Process,,response to stimulus,,,,,8.16E-05
GO:0051704,Biological Process,,multi-organism process,,,,,8.20E-05
GO:0006261,Biological Process,,DNA-dependent DNA replication,,,,,0.0001
GO:0004601,Molecular Function,,peroxidase activity,,,,,0.000174
GO:0016684,Molecular Function,,"oxidoreductase activity, acting on peroxide as acceptor",,,,,0.000174
GO:0006022,Biological Process,,aminoglycan metabolic process,,,,,0.000225
GO:0006026,Biological Process,,aminoglycan catabolic process,,,,,0.000225
GO:0006030,Biological Process,,chitin metabolic process,,,,,0.000225
GO:0006032,Biological Process,,chitin catabolic process,,,,,0.000225
GO:0016998,Biological Process,,cell wall macromolecule catabolic process,,,,,0.000225
GO:0046348,Biological Process,,amino sugar catabolic process,,,,,0.000225
GO:1901071,Biological Process,,glucosamine-containing compound metabolic process,,,,,0.000225
GO:1901072,Biological Process,,glucosamine-containing compound catabolic process,,,,,0.000225
GO:0009056,Biological Process,,catabolic process,,,,,0.000262
GO:0004568,Molecular Function,,chitinase activity,,,,,0.000298
GO:0016209,Molecular Function,,antioxidant activity,,,,,0.000299
GO:0042555,Cellular Component,,MCM complex,,,,,0.000361
GO:1901565,Biological Process,,organonitrogen compound catabolic process,,,,,0.000403
GO:0006040,Biological Process,,amino sugar metabolic process,,,,,0.000431
GO:0044710,Biological Process,,single-organism metabolic process,,,,,0.00049
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Supplementary Table 4. KEGG enrichment for the DAPs (P < 0.05),,,,,,,,
Ko- ID,Description,,,,P-value,,,
ko00940,Phenylpropanoid biosynthesis,,,,4.37E-07,,,
ko01100,Metabolic pathways,,,,2.47E-05,,,
ko00941,Flavonoid biosynthesis,,,,0.000178,,,
ko01110,Biosynthesis of secondary metabolites,,,,0.000191,,,
ko03030,DNA replication,,,,0.000737,,,
ko00910,Nitrogen metabolism,,,,0.001343,,,
ko00280,"Valine, leucine and isoleucine degradation",,,,0.001507,,,
ko00908,Zeatin biosynthesis,,,,0.00227,,,
ko00072,Synthesis and degradation of ketone bodies,,,,0.003026,,,
ko00650,Butanoate metabolism,,,,0.003979,,,
ko03410,Base excision repair,,,,0.011222,,,
ko04016,MAPK signaling pathway - plant,,,,0.024375,,,
ko00250,"Alanine, aspartate and glutamate metabolism",,,,0.02664,,,
ko00100,Steroid biosynthesis,,,,0.032428,,,