###################### INPUT FILE ####################### #NEXUS begin taxa; dimensions ntax= 92; taxlabels AB626850.1_Megalobrama_terminali AP010779.1_Mylocheilus_caurinus_ AP011215.1_Gila_sp._1460_mitocho AP011263.1_Scardinius_erythropht AP011267.1_Algansea_lacustris_mi AP011268.1_Yuriria_alta_mitochon AP011273.1_Hybognathus_nuchalis_ AP011274.1_Couesius_plumbeus_mit AP011275.1_Platygobio_gracilis_m AP011277.1_Erimystax_dissimilis_ AP011279.1_Pimephales_promelas_m AP011280.1_Clinostomus_elongatus AP012079.1_Luxilus_chrysocephalu AP012080.1_Macrhybopsis_gelida_m AP012083.1_Notropis_atherinoides AP012084.1_Notropis_baileyi_mito AP012087.1_Cyprinella_galactura_ AP012088.1_Hybopsis_lineapunctat AP012090.1_Luxilus_cornutus_mito AP012091.1_Lythrurus_ardens_mito AP012092.1_Lythrurus_fumeus_mito AP012093.1_Lythrurus_lirus_mitoc AP012094.1_Lythrurus_umbratilis_ AP012095.1_Macrhybopsis_meeki_mi AP012097.1_Notropis_bifrenatus_m AP012098.1_Pimephales_sp._MCZunc AP012100.1_Notropis_telescopus_m AP012101.1_Pimephales_notatus_mi AP012102.1_Pimephales_vigilax_mi AP012103.1_Pogonichthys_macrolep AP012106.1_Richardsonius_balteat AP012108.1_Notropis_chrosomus_mi AY216542.1_Lythrurus_umbratilus_ Pimephales_vigilax_R1S2_________ Pimephales_vigilax_R1S3_________ DQ536429.1_Notropis_stramineus_m JX910141.1_Squaliobarbus_curricu KC351187.1_Squaliobarbus_curricu KT278765.1_Pimephales_promelas_m KT289925.1_Pimephales_promelas_m KT424924.1_Rhinichthys_osculus_m KU200257.1_Chanodichthys_ilishae MF972070.1_Siphateles_bicolor_mo MG570407.1_Notropis_chalybaeus_v MG570408.1_Notropis_bifrenatus_v MG570413.1_Notropis_heterolepis_ MG570416.1_Rhinichthys_obtusus_v MG570417.1_Rhinichthys_obtusus_v MG570420.1_Pimephales_notatus_vo MG570443.1_Notropis_hudsonius_is MG570444.1_Rhinichthys_atratulus MG570445.1_Rhinichthys_atratulus MG570447.1_Luxilus_cornutus_isol MG570449.1_Luxilus_cornutus_isol MG570450.1_Pimephales_notatus_is MG570451.1_Notropis_bifrenatus_i MG570453.1_Exoglossum_maxillingu MG570454.1_Pimephales_promelas_i MG570455.1_Notropis_atherinoides MG570456.1_Notropis_atherinoides MG570457.1_Pimephales_notatus_is MG570458.1_Pimephales_notatus_is MK421554.1_Parabramis_pekinensis MT333789.1_Notropis_lutipinnis_v MT364325.1_Hybognathus_amarus_mi MT501368.1_Gila_cypha_isolate_SN MT501369.1_Notropis_simus_pecose MT501378.1_Hybognathus_amarus_is MT501385.1_Notropis_jemezanus_vo MT501391.1_Rhinichthys_osculus_i MT667239.1_Rhinichthys_osculus_t MT667242.1_Luxilus_cornutus_vouc MW300340.1_Hybognathus_placitus_ MW300341.1_Hybognathus_placitus_ NC_013763.1_Mylocheilus_caurinus NC_033926.1_Opsopoeodus_emiliae_ NC_037008.1_Notropis_chalybaeus_ NC_037009.1_Notropis_heterolepis NC_037010.1_Rhinichthys_obtusus_ NC_037014.1_Notropis_hudsonius_i NC_037015.1_Exoglossum_maxilling NC_054086.1_Ptychocheilus_lucius NC_054257.1_Gila_cypha_isolate_S NC_054259.1_Gila_nigrescens_isol NC_054260.1_Hybognathus_amarus_i NC_054262.1_Notropis_jemezanus_v Pimephales_notatus_R2S3_________ Pimephales_tenellus_tenellu_R2S1 Pimephales_tenellus_parvice_R2S2 Pimephales_notatus_R1S1_________ MG570452.1_Pimephales_promelas_i MG570452.1_Pimephales_promelas_S ; end; begin data; dimensions ntax=92 nchar= 15827; format missing=N gap=- matchchar=. datatype=dna interleave=yes; matrix AB626850.1_Megalobrama_terminali GCTAGCGTAGCTTAATACAAAGCATAACACTGAAGATGTTAAGATGGGTCCTAAAAAACTCCGCATGCATAAAGGCATGG AP010779.1_Mylocheilus_caurinus_ .........................G......................C...G.G..G...........C.......... AP011215.1_Gila_sp._1460_mitocho ................................................C...G.G..G...................... AP011263.1_Scardinius_erythropht ................................................C...G.G..G...................... AP011267.1_Algansea_lacustris_mi ..............................................A.C...G....G.C....G....C.......... AP011268.1_Yuriria_alta_mitochon ..........................................A.....C...G.G..G...........C.......... AP011273.1_Hybognathus_nuchalis_ ................................................C...G.G..G...........C.......... AP011274.1_Couesius_plumbeus_mit ................................................C...G.G..G...................... AP011275.1_Platygobio_gracilis_m ..........................................A.....C...G.G..G...........C.......... AP011277.1_Erimystax_dissimilis_ ................................................C...G.C..G......G............... AP011279.1_Pimephales_promelas_m ...............C................................C.....G..G......G....C.......... AP011280.1_Clinostomus_elongatus ................................................C...G.G..G...........C.......... AP012079.1_Luxilus_chrysocephalu .....T..........................................C...G.G..G....A......C.......... AP012080.1_Macrhybopsis_gelida_m .....T.........C................................C.....G..G....A......C.......... AP012083.1_Notropis_atherinoides .........................G......................C...G.G..G...........C.......... AP012084.1_Notropis_baileyi_mito ..........................................A.....C...G.G..G...........C.......... AP012087.1_Cyprinella_galactura_ ................G.........................A.....C....G...G...........C.......... AP012088.1_Hybopsis_lineapunctat ................G...............................C...G.G..GT..........C.......... AP012090.1_Luxilus_cornutus_mito ................................................C...G.G..G......G....C.......... AP012091.1_Lythrurus_ardens_mito ................................................C...G.G..G...........C.......... AP012092.1_Lythrurus_fumeus_mito ..........................................A.....C...G.G..G...........C.......... AP012093.1_Lythrurus_lirus_mitoc ................................................C...G.G..G...........C.......... AP012094.1_Lythrurus_umbratilis_ ................................................C...G.G..G...........C.......... AP012095.1_Macrhybopsis_meeki_mi .....T..........TT..............................C.....G..G....A......C.......... AP012097.1_Notropis_bifrenatus_m ................................................C...G.G..G...........C.......... AP012098.1_Pimephales_sp._MCZunc ................................................C...G.G..G...........C.......... AP012100.1_Notropis_telescopus_m ..............................................A.C...G.G..G...........C.......... AP012101.1_Pimephales_notatus_mi .................T................A.............C...G.G..G...........C.......... AP012102.1_Pimephales_vigilax_mi ..........................................A.....C...G.G..G...........C.......... AP012103.1_Pogonichthys_macrolep ................................................C...G.G..G...........C.......... AP012106.1_Richardsonius_balteat ................................................C...GG...G...........C.......... AP012108.1_Notropis_chrosomus_mi ...C............................................C....G...G...........C.......... AY216542.1_Lythrurus_umbratilus_ ---------------------------------------------------------------------C.......... Pimephales_vigilax_R1S2_________ ..........................................A.....C...G.G..G...........C.......... Pimephales_vigilax_R1S3_________ ..........................................A.....C...G.G..G...........C.......... DQ536429.1_Notropis_stramineus_m ................................................C...G.G..G...........C.......... JX910141.1_Squaliobarbus_curricu ......................................................G......................... KC351187.1_Squaliobarbus_curricu ......................................................G......................... KT278765.1_Pimephales_promelas_m ...............C................................C.....G..G...........C.......... KT289925.1_Pimephales_promelas_m ...............C................................C.....G..G......G....C.......... KT424924.1_Rhinichthys_osculus_m ............................................C...C.....G..G...........C.......... KU200257.1_Chanodichthys_ilishae ......................................................G......................... MF972070.1_Siphateles_bicolor_mo ................................................C...G.G..G...........C.......... MG570407.1_Notropis_chalybaeus_v ............................................C...C...G.G..G...........C.......... MG570408.1_Notropis_bifrenatus_v ................................................C...G.G..G...........C.......... MG570413.1_Notropis_heterolepis_ ..........................................A.....C...G.G..G...........C.......... MG570416.1_Rhinichthys_obtusus_v .........................G......................C...G.G..G...................... MG570417.1_Rhinichthys_obtusus_v .........................G......................C...G.G..G...................... MG570420.1_Pimephales_notatus_vo ................................................C...G.G..G...........C.......... MG570443.1_Notropis_hudsonius_is ................................................C...G.G..G...........C.......... MG570444.1_Rhinichthys_atratulus ................G...............................C.....G..G...................... MG570445.1_Rhinichthys_atratulus ................................................C.....G..G...................... MG570447.1_Luxilus_cornutus_isol ................................................C...G.G..G...........C.......... MG570449.1_Luxilus_cornutus_isol ................................................C...G.G..G...........C.......... MG570450.1_Pimephales_notatus_is ................................................C...G.G..G...........C.......... MG570451.1_Notropis_bifrenatus_i ................................................C...G.G..G...........C.......... MG570453.1_Exoglossum_maxillingu ................................................C...G.C..G......G............... MG570454.1_Pimephales_promelas_i ...............C..........................A.....C.....G..G......G....C.......... MG570455.1_Notropis_atherinoides ................................................C...G.G..G...........C.......... MG570456.1_Notropis_atherinoides .........................G......................C...G.G..G...........C.......... MG570457.1_Pimephales_notatus_is ................................................C...G.G..G...........C.......... MG570458.1_Pimephales_notatus_is ................................................C...G.G..G...........C.......... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v -------..................G................A.....C...G....G.....T.....C.......... MT364325.1_Hybognathus_amarus_mi ..........................................A.....C...G.G..G...........C.......... MT501368.1_Gila_cypha_isolate_SN ................................................C...G.G..G...................... MT501369.1_Notropis_simus_pecose ............................................C...C...G.G..G...........C.......... MT501378.1_Hybognathus_amarus_is ..................................A.......A.....C...G.G..G...........C.......... MT501385.1_Notropis_jemezanus_vo ................................................C...G.G..G...........C.......... MT501391.1_Rhinichthys_osculus_i .....T..........................................C...G.G..G...........C.......... MT667239.1_Rhinichthys_osculus_t .....T..........................................C...G.G..G...........C.......... MT667242.1_Luxilus_cornutus_vouc ..........................................C.....C...G.G..G...........C.......... MW300340.1_Hybognathus_placitus_ ................................................C...G.G..G...........C.......... MW300341.1_Hybognathus_placitus_ ................................................C...G.G..G...........C.......... NC_013763.1_Mylocheilus_caurinus .........................G......................C...G.G..G...........C.......... NC_033926.1_Opsopoeodus_emiliae_ .....T...........T............................A.C.....G..G...........C.......... NC_037008.1_Notropis_chalybaeus_ ............................................C...C...G.G..G...........C.......... NC_037009.1_Notropis_heterolepis ..........................................A.....C...G.G..G...........C.......... NC_037010.1_Rhinichthys_obtusus_ .........................G......................C...G.G..G...................... NC_037014.1_Notropis_hudsonius_i ................................................C...G.G..G...........C.......... NC_037015.1_Exoglossum_maxilling ................................................C...G.C..G......G............... NC_054086.1_Ptychocheilus_lucius ................................................C...G.G..G...................... NC_054257.1_Gila_cypha_isolate_S ................................................C...G.G..G...................... NC_054259.1_Gila_nigrescens_isol ..............................................A.C...G.G..G...................... NC_054260.1_Hybognathus_amarus_i ..........................................A.....C...G.G..G...........C.......... NC_054262.1_Notropis_jemezanus_v ................................................C...G.G..G...........C.......... Pimephales_notatus_R2S3_________ ................................................C...G.G..G...........C.......... Pimephales_tenellus_tenellu_R2S1 ................G...............................C...G.G..G...........C.......... Pimephales_tenellus_parvice_R2S2 ................G...............................C...G.G..G...........C.......... Pimephales_notatus_R1S1_________ ................................................C...G.G..G...........C.......... MG570452.1_Pimephales_promelas_i ...............C..................A.......A.....C.....G..G......G....C.......... MG570452.1_Pimephales_promelas_S ...............C................................C.....G..G......G....C.......... AB626850.1_Megalobrama_terminali TCCTGACCTTATTATCAGCTCTTACCCGACTTACACATGCAAGTCTCCGCAGTCCCGTGAGTATGCCCTCAATCCCCCGC AP010779.1_Mylocheilus_caurinus_ ......................A....A........................C..........C.....T.......T.. AP011215.1_Gila_sp._1460_mitocho ......................A....A........................C..T.......C.....T.......T.. AP011263.1_Scardinius_erythropht ...............T......A....A........................C................T.......T.. AP011267.1_Algansea_lacustris_mi ...C.......CC.......G.AG.T.A.......................AC..........A.....T.......T.. AP011268.1_Yuriria_alta_mitochon ...C.......C..........AG...A........................C..........A.....T.......T.. AP011273.1_Hybognathus_nuchalis_ ...C.......C.G......T.AG...A........................C..........A.....T.......T.. AP011274.1_Couesius_plumbeus_mit ......................A....A.......................AC................T.......T.. AP011275.1_Platygobio_gracilis_m ...C.......C..........AG...A........................C..........A.....T.......... AP011277.1_Erimystax_dissimilis_ ......................A....A.......................AC..........C................ AP011279.1_Pimephales_promelas_m ...C..................AG...A........................C..........A.....T.......T.. AP011280.1_Clinostomus_elongatus ......................A....A...................................C.....T.......T.. AP012079.1_Luxilus_chrysocephalu ...C.......C..........AG...A........................C..........A.............T.. AP012080.1_Macrhybopsis_gelida_m ...C.......C.G......T.AG...A.......................CC..T.......A.....T.......... AP012083.1_Notropis_atherinoides ...C.......C..........AG...A...................................A.....T.......T.. AP012084.1_Notropis_baileyi_mito ...C.......C..........AG...A...................................A.............T.. AP012087.1_Cyprinella_galactura_ ...C.......CC....A....AG...A........................C..T.............T.......T.. AP012088.1_Hybopsis_lineapunctat ...C.......C..........AG...A...................................A.....T.......... AP012090.1_Luxilus_cornutus_mito ...C.......C..........AG...A........................C..........A.............T.. AP012091.1_Lythrurus_ardens_mito ...C.......C..........AG...A........................C..........A.....T.......T.. AP012092.1_Lythrurus_fumeus_mito ...C.......C..........AG...A........................C..........A.....T.......T.. AP012093.1_Lythrurus_lirus_mitoc ...C.......C..........AG...A........................C..........A.....T.......T.. AP012094.1_Lythrurus_umbratilis_ ...C.......C..........AG...A........................C..........A.....T.......T.. AP012095.1_Macrhybopsis_meeki_mi ...C.......C........T.AG...A.......................CC..........A.....T.......... AP012097.1_Notropis_bifrenatus_m ...C..................AG...A.......................AC..T.......A.....T.......T.. AP012098.1_Pimephales_sp._MCZunc ...C.......C.G......T.AG...A........................C..........A.....T.......T.. AP012100.1_Notropis_telescopus_m ...C.......C..........AG...A........................C..........A.....T.......... AP012101.1_Pimephales_notatus_mi ...C.......C.G......T.AG...A........................C..........A.....T.......T.. AP012102.1_Pimephales_vigilax_mi ...C.......C.......C..GG...A.......................AA..........A.............TA. AP012103.1_Pogonichthys_macrolep ......................A....A........................C..........C.....T.......T.. AP012106.1_Richardsonius_balteat ....................A.A....A................................A..C.....T.......T.. AP012108.1_Notropis_chrosomus_mi ...C.......C........T.A....A........................C..T.......A.............T.. AY216542.1_Lythrurus_umbratilus_ ...C.......C..........AG...A........................C..........A.....T.......T.. Pimephales_vigilax_R1S2_________ ...C.......C.......C..GG...A.......................AA..........A.............TA. Pimephales_vigilax_R1S3_________ ...C.......C.......C..GG...A.......................AA..........A.............TA. DQ536429.1_Notropis_stramineus_m ...C.......C....G.....AG...A........................C..........A.....T.......TA. JX910141.1_Squaliobarbus_curricu ...........................A........................C........................... KC351187.1_Squaliobarbus_curricu ...........................A........................C........................... KT278765.1_Pimephales_promelas_m ...C.............A....AG...A........................C..........A.............T.. KT289925.1_Pimephales_promelas_m ...C.........G...A....AG...A........................C..........A.....T.......T.. KT424924.1_Rhinichthys_osculus_m ......................A....A........................C..........C.....T.......T.. KU200257.1_Chanodichthys_ilishae ......................C............................AC........................... MF972070.1_Siphateles_bicolor_mo ......................A....A...........................T.......C.....T.......T.. MG570407.1_Notropis_chalybaeus_v ...C.......C..........A........................................A.....T.......T.. MG570408.1_Notropis_bifrenatus_v ...C..................AG...A.......................AC..T.......A.....T.......T.. MG570413.1_Notropis_heterolepis_ ...C.......C........T.AG...A........................C..........A.....T.......T.. MG570416.1_Rhinichthys_obtusus_v ......................A....A........................C..........C.............T.. MG570417.1_Rhinichthys_obtusus_v ......................A....A........................C..........C.............T.. MG570420.1_Pimephales_notatus_vo ...C.......C.G......T.AG...A........................C..........A.....T.......T.. MG570443.1_Notropis_hudsonius_is ...C......GC..........AG...A.......................AC..........A.....T.......T.. MG570444.1_Rhinichthys_atratulus ......................AG...A.......................AC..........C................ MG570445.1_Rhinichthys_atratulus ......................AG...A.......................AC..........C.............T.. MG570447.1_Luxilus_cornutus_isol ...C.......C.G........AG...A........................C..........A.............T.. MG570449.1_Luxilus_cornutus_isol ...C.......C.G........AG...A........................C..........A.............T.. MG570450.1_Pimephales_notatus_is ...C.......C.G......T.AG...A........................C..........A.....T.......T.. MG570451.1_Notropis_bifrenatus_i ...C..................AG...A.......................AC..T.......A.....T.......T.. MG570453.1_Exoglossum_maxillingu ......................A....A.......................AC..........C................ MG570454.1_Pimephales_promelas_i ...C.........G...A....AG...A........................C..........A.....T.......T.. MG570455.1_Notropis_atherinoides ...C.......C..........AG...A..................................GA.....T.......T.. MG570456.1_Notropis_atherinoides ...C.......C..........AG...A...................................A.....T.......T.. MG570457.1_Pimephales_notatus_is ...C.......C.G......T.AG...A........................C..........A.....T.......T.. MG570458.1_Pimephales_notatus_is ...C.......C.G......T.AG...A........................C..........A.....T.......T.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...C..................AG............................C..........A.....T.......T.. MT364325.1_Hybognathus_amarus_mi ...C........AG........AG...A........................C..........A.....T.......T.. MT501368.1_Gila_cypha_isolate_SN ......................A....A...........................T.......C.....T.......T.. MT501369.1_Notropis_simus_pecose ...C.......C..........AG...A........................C..........A.....T.......... MT501378.1_Hybognathus_amarus_is ...C........AG........AG...A........................C..........A.....T.......T.. MT501385.1_Notropis_jemezanus_vo ...C.......C..........AG...A........................C..........A.....T.......T.. MT501391.1_Rhinichthys_osculus_i ......................A....A........................C..........C.....T.......T.. MT667239.1_Rhinichthys_osculus_t ......................A....A........................C..........C.....T.......T.. MT667242.1_Luxilus_cornutus_vouc ...C.......C.G........AG...A........................C..........A.............T.. MW300340.1_Hybognathus_placitus_ ...C.......C.G.T...C..AG...A........................C..........A.............T.. MW300341.1_Hybognathus_placitus_ ...C.......C.G.T...C..AG...A........................C..........A.............T.. NC_013763.1_Mylocheilus_caurinus ......................A....A........................C..........C.....T.......T.. NC_033926.1_Opsopoeodus_emiliae_ ...C................T.AG...A........................C..T.......A........-.....A. NC_037008.1_Notropis_chalybaeus_ ...C.......C..........A........................................A.....T.......T.. NC_037009.1_Notropis_heterolepis ...C.......C........T.AG...A........................C..........A.....T.......T.. NC_037010.1_Rhinichthys_obtusus_ ......................A....A........................C..........C.............T.. NC_037014.1_Notropis_hudsonius_i ...C......GC..........AG...A.......................AC..........A.....T.......T.. NC_037015.1_Exoglossum_maxilling ......................A....A.......................AC..........C................ NC_054086.1_Ptychocheilus_lucius ....................T.A....A...........................T.......C.....T.......T.. NC_054257.1_Gila_cypha_isolate_S ......................A....A...........................T.......C.....T.......T.. NC_054259.1_Gila_nigrescens_isol ......................A....A...........................T.......C.....T.......T.. NC_054260.1_Hybognathus_amarus_i ...C........AG........AG...A........................C..........A.....T.......T.. NC_054262.1_Notropis_jemezanus_v ...C.......C..........AG...A........................C..........A.....T.......T.. Pimephales_notatus_R2S3_________ ...C.......C.G......T.AG...A........................C..........A.....T.......T.. Pimephales_tenellus_tenellu_R2S1 ...C........C....A....AG...A.......................AC..........G.....T........A. Pimephales_tenellus_parvice_R2S2 ...C........C....A....AG...A.......................AC..........G.....T........A. Pimephales_notatus_R1S1_________ ...C.......C.G......T.AG...A........................C..........A.....T.......T.. MG570452.1_Pimephales_promelas_i ...C.........G...A....AG...A........................C..........A.....T.......T.. MG570452.1_Pimephales_promelas_S ...C..................AG...A........................C..........A.....T.......T.. AB626850.1_Megalobrama_terminali CCGGGGACGAGGAGCGGGCATCAGGCACAAAT-TTTAGCCCAAGACGCCTGGCCAAGCCACACCCCCAAGGGAATTCAGC AP010779.1_Mylocheilus_caurinus_ ...............................CT.....................T......................... AP011215.1_Gila_sp._1460_mitocho ................................T............................................... AP011263.1_Scardinius_erythropht ................................T.....................G......................... AP011267.1_Algansea_lacustris_mi ...............A...............CC.C..............A....T......................... AP011268.1_Yuriria_alta_mitochon ...............A..........G.....C................A....G......................... AP011273.1_Hybognathus_nuchalis_ ...............A................C................A....T......................... AP011274.1_Couesius_plumbeus_mit ............................G...T.....................T......................... AP011275.1_Platygobio_gracilis_m ...............A...............CC................A....T......................... AP011277.1_Erimystax_dissimilis_ ...............A...............CC.....................T......................... AP011279.1_Pimephales_promelas_m ...............A................C................A....T......................... AP011280.1_Clinostomus_elongatus ...............................CC.....................T......................... AP012079.1_Luxilus_chrysocephalu ...............A.............T..C................A....T......................... AP012080.1_Macrhybopsis_gelida_m ...............A...............CT................A....T......................... AP012083.1_Notropis_atherinoides ...............A................-................A....T......................... AP012084.1_Notropis_baileyi_mito ...............A................G................A....G......................... AP012087.1_Cyprinella_galactura_ ...............A.............T.GTA...............A....T......................... AP012088.1_Hybopsis_lineapunctat ...............A...............GC................A....G......................... AP012090.1_Luxilus_cornutus_mito ...............A................C................A....G......................... AP012091.1_Lythrurus_ardens_mito ...............A...............CC................A....T......................... AP012092.1_Lythrurus_fumeus_mito ...............A...............CC................A....T......................... AP012093.1_Lythrurus_lirus_mitoc ...............A...............CC................A....T......................... AP012094.1_Lythrurus_umbratilis_ ...............A...............CC................A....T......................... AP012095.1_Macrhybopsis_meeki_mi ...............A...............CC-...............A....T......................... AP012097.1_Notropis_bifrenatus_m ...............A................A................A.............................. AP012098.1_Pimephales_sp._MCZunc ...............A................C................A....G......................... AP012100.1_Notropis_telescopus_m ...............A................CC...............A....G......................... AP012101.1_Pimephales_notatus_mi ...............A................C................A....G......................... AP012102.1_Pimephales_vigilax_mi ...............A..............G.CA...............A...AG......................... AP012103.1_Pogonichthys_macrolep ...............................CC.....................T......................... AP012106.1_Richardsonius_balteat ...............................CC.....................T......................... AP012108.1_Notropis_chrosomus_mi ...............A................CC...............A....G......................... AY216542.1_Lythrurus_umbratilus_ ...............A...............CC................A....T......................... Pimephales_vigilax_R1S2_________ ...............A..............G.CA...............A...AG......................... Pimephales_vigilax_R1S3_________ ...............A..............G.CA...............A...AG......................... DQ536429.1_Notropis_stramineus_m ...............A...............GC................A....C......................... JX910141.1_Squaliobarbus_curricu ................................-............................................... KC351187.1_Squaliobarbus_curricu ................................-............................................... KT278765.1_Pimephales_promelas_m ...............A................C................A....G......................... KT289925.1_Pimephales_promelas_m ...............A................C................A....G......................... KT424924.1_Rhinichthys_osculus_m ...............A...............CCA..G.................T......................... KU200257.1_Chanodichthys_ilishae ................................-............................................... MF972070.1_Siphateles_bicolor_mo ................................T............................................... MG570407.1_Notropis_chalybaeus_v ...............A................T................A....G......................... MG570408.1_Notropis_bifrenatus_v ...............A................A................A.............................. MG570413.1_Notropis_heterolepis_ ...............A...............CC................A....G......................... MG570416.1_Rhinichthys_obtusus_v ...............A...............CA.....................T......................... MG570417.1_Rhinichthys_obtusus_v ...............A...............CA.....................T......................... MG570420.1_Pimephales_notatus_vo ...............A................C................A....G......................... MG570443.1_Notropis_hudsonius_is ...............A..............CCC................A.....C........................ MG570444.1_Rhinichthys_atratulus ...............A...............CA.....................T......................... MG570445.1_Rhinichthys_atratulus ...............A...............CA.....................T......................... MG570447.1_Luxilus_cornutus_isol ...............A................C................A....G......................... MG570449.1_Luxilus_cornutus_isol ...............A................C................A....G......................... MG570450.1_Pimephales_notatus_is ...............A................C................A....G......................... MG570451.1_Notropis_bifrenatus_i ...............A................A................A.............................. MG570453.1_Exoglossum_maxillingu ...............A...............CC.....................T......................... MG570454.1_Pimephales_promelas_i ...............A................C................A....G......................... MG570455.1_Notropis_atherinoides ...............A................-................A....T......................... MG570456.1_Notropis_atherinoides ...............A................-................A....T......................... MG570457.1_Pimephales_notatus_is ...............A.............G..C................A....G......................... MG570458.1_Pimephales_notatus_is ...............A................C................A....G......................... MK421554.1_Parabramis_pekinensis ................................-............................................... MT333789.1_Notropis_lutipinnis_v ...............A.............G..CC...............A....G......................... MT364325.1_Hybognathus_amarus_mi ...............A................C................A....T......................... MT501368.1_Gila_cypha_isolate_SN ................................T............................................... MT501369.1_Notropis_simus_pecose ...............A................T................A....G......................... MT501378.1_Hybognathus_amarus_is ...............A................C................A....T......................... MT501385.1_Notropis_jemezanus_vo ...............A................T................A....T......................... MT501391.1_Rhinichthys_osculus_i ..............TA...............CCA....................T......................... MT667239.1_Rhinichthys_osculus_t ..............TA...............CCA....................T......................... MT667242.1_Luxilus_cornutus_vouc ...............A................C................A....G......................... MW300340.1_Hybognathus_placitus_ ...............A................C................A....T......................... MW300341.1_Hybognathus_placitus_ ...............A................C................A....T......................... NC_013763.1_Mylocheilus_caurinus ...............................CT.....................T......................... NC_033926.1_Opsopoeodus_emiliae_ ......G........A..T..........T-.AC.C.............AA...G......................... NC_037008.1_Notropis_chalybaeus_ ...............A................T................A....G......................... NC_037009.1_Notropis_heterolepis ...............A...............CC................A....G......................... NC_037010.1_Rhinichthys_obtusus_ ...............A...............CA.....................T......................... NC_037014.1_Notropis_hudsonius_i ...............A..............CCC................A.....C........................ NC_037015.1_Exoglossum_maxilling ...............A...............CC.....................T......................... NC_054086.1_Ptychocheilus_lucius ................................T............................................... NC_054257.1_Gila_cypha_isolate_S ................................T............................................... NC_054259.1_Gila_nigrescens_isol ................................T............................................... NC_054260.1_Hybognathus_amarus_i ...............A................C................A....T......................... NC_054262.1_Notropis_jemezanus_v ...............A................T................A....T......................... Pimephales_notatus_R2S3_________ ...............A................C................A....G......................... Pimephales_tenellus_tenellu_R2S1 ...............A................C................A....T......................... Pimephales_tenellus_parvice_R2S2 ...............A................C................A....T......................... Pimephales_notatus_R1S1_________ ...............A................C................A....G......................... MG570452.1_Pimephales_promelas_i ...............A................C................A.............................. MG570452.1_Pimephales_promelas_S ...............A................C................A....T......................... AB626850.1_Megalobrama_terminali AGTGATAAACATTAAGCCATAAGTGAAAACTTGACTCAGTCAGGGCTAAG--AGGGCCGGTAAAACTCGTGCCAGCCACC AP010779.1_Mylocheilus_caurinus_ .......G.T...G....................................--............................ AP011215.1_Gila_sp._1460_mitocho .........T..........G........................T....--............................ AP011263.1_Scardinius_erythropht .........T..........G........................T....--............................ AP011267.1_Algansea_lacustris_mi .........T..............................T..A......--............................ AP011268.1_Yuriria_alta_mitochon .........T.................................A......--............................ AP011273.1_Hybognathus_nuchalis_ .........T.................................A......--............................ AP011274.1_Couesius_plumbeus_mit .........T..............................T....T....--............................ AP011275.1_Platygobio_gracilis_m .........T.................................A......--............................ AP011277.1_Erimystax_dissimilis_ .........T...................................T...TGT............................ AP011279.1_Pimephales_promelas_m .........T.................................A......--............................ AP011280.1_Clinostomus_elongatus .........T...................................T....--............................ AP012079.1_Luxilus_chrysocephalu .........T.............................C...A......--............................ AP012080.1_Macrhybopsis_gelida_m .........T.................................A......--............................ AP012083.1_Notropis_atherinoides .........T..............................T..A......--............................ AP012084.1_Notropis_baileyi_mito .........T.................................A......--.........T.................. AP012087.1_Cyprinella_galactura_ .........T..........................T......A......--............................ AP012088.1_Hybopsis_lineapunctat .........T...G......G.......G..............A......--..A......................... AP012090.1_Luxilus_cornutus_mito .........T.................................A......--............................ AP012091.1_Lythrurus_ardens_mito .........T..................G..............A......--............................ AP012092.1_Lythrurus_fumeus_mito .........T..................G..............C......--............................ AP012093.1_Lythrurus_lirus_mitoc .........T.................................A......--............................ AP012094.1_Lythrurus_umbratilis_ .........T..................G..............A......--............................ AP012095.1_Macrhybopsis_meeki_mi .........T.................................A.....A--............................ AP012097.1_Notropis_bifrenatus_m .........T.......T.....................C..........--............................ AP012098.1_Pimephales_sp._MCZunc .........T.................................A......--............................ AP012100.1_Notropis_telescopus_m .........T.................................A......--............................ AP012101.1_Pimephales_notatus_mi .........T..............................T..A......--............................ AP012102.1_Pimephales_vigilax_mi .........T...G..............G.........A.T..A..C..A--............................ AP012103.1_Pogonichthys_macrolep .........T...G...............................T....--............................ AP012106.1_Richardsonius_balteat .........T...................................T....--............................ AP012108.1_Notropis_chrosomus_mi .........T...G.............................A......--............................ AY216542.1_Lythrurus_umbratilus_ .........T..................G..............A......--............................ Pimephales_vigilax_R1S2_________ .........T...G..............G.........A.T..A..C..A--............................ Pimephales_vigilax_R1S3_________ .........T...G..............G.........A.T..A..C..A--............................ DQ536429.1_Notropis_stramineus_m ...........................................A..C...--............................ JX910141.1_Squaliobarbus_curricu .............................................T....--............................ KC351187.1_Squaliobarbus_curricu .............................................T....--............................ KT278765.1_Pimephales_promelas_m .........T.................................A......--............................ KT289925.1_Pimephales_promelas_m .........T.................................A......--............................ KT424924.1_Rhinichthys_osculus_m .........T...................................T.G..--............................ KU200257.1_Chanodichthys_ilishae .............................................T...A--............................ MF972070.1_Siphateles_bicolor_mo ........................................T....T.G..--............................ MG570407.1_Notropis_chalybaeus_v .........T........................................--............................ MG570408.1_Notropis_bifrenatus_v .........T.......T.....................C..........--............................ MG570413.1_Notropis_heterolepis_ .........T...G.............................C......--............................ MG570416.1_Rhinichthys_obtusus_v .........T..........G........................T....--............................ MG570417.1_Rhinichthys_obtusus_v .........T..........G........................T....--............................ MG570420.1_Pimephales_notatus_vo .........T.................................A......--............................ MG570443.1_Notropis_hudsonius_is .......G.T.................................A......--............................ MG570444.1_Rhinichthys_atratulus .........T...................................T....--............................ MG570445.1_Rhinichthys_atratulus .........T...................................T....--............................ MG570447.1_Luxilus_cornutus_isol .........T.................................A......--............................ MG570449.1_Luxilus_cornutus_isol .........T.................................A......--............................ MG570450.1_Pimephales_notatus_is .........T.................................A......--............................ MG570451.1_Notropis_bifrenatus_i .........T.......T.....................C..........--............................ MG570453.1_Exoglossum_maxillingu .........T...................................T...TG-............................ MG570454.1_Pimephales_promelas_i .........T.................................A......--............................ MG570455.1_Notropis_atherinoides .........T..............................T..A......--............................ MG570456.1_Notropis_atherinoides .........T..............................T..A......--............................ MG570457.1_Pimephales_notatus_is .........T.................................A......--............................ MG570458.1_Pimephales_notatus_is .........T.................................A......--............................ MK421554.1_Parabramis_pekinensis ..................................................--............................ MT333789.1_Notropis_lutipinnis_v .......G.T................................A.......--............................ MT364325.1_Hybognathus_amarus_mi .........T.................................A......--............................ MT501368.1_Gila_cypha_isolate_SN .........T..........G........................T....--............................ MT501369.1_Notropis_simus_pecose .........T........................................--............................ MT501378.1_Hybognathus_amarus_is .........T.................................A......--............................ MT501385.1_Notropis_jemezanus_vo .........T...G..........................T..A......--............................ MT501391.1_Rhinichthys_osculus_i .........T..................G...........G....T....--............................ MT667239.1_Rhinichthys_osculus_t .........T..................G................T....--............................ MT667242.1_Luxilus_cornutus_vouc .........T.................................A......--............................ MW300340.1_Hybognathus_placitus_ .........T...G.............................A......--.........................G.. MW300341.1_Hybognathus_placitus_ .........T...G.............................A......--.........................G.. NC_013763.1_Mylocheilus_caurinus .......G.T...G....................................--............................ NC_033926.1_Opsopoeodus_emiliae_ .........T..........................T...T..A......--.........................G.. NC_037008.1_Notropis_chalybaeus_ .........T........................................--............................ NC_037009.1_Notropis_heterolepis .........T...G.............................C......--............................ NC_037010.1_Rhinichthys_obtusus_ .........T..........G........................T....--............................ NC_037014.1_Notropis_hudsonius_i .......G.T.................................A......--............................ NC_037015.1_Exoglossum_maxilling .........T...................................T...TG-............................ NC_054086.1_Ptychocheilus_lucius .........T..........G........................T....--............................ NC_054257.1_Gila_cypha_isolate_S .........T..........G........................T....--............................ NC_054259.1_Gila_nigrescens_isol .........T..........G........................T....--............................ NC_054260.1_Hybognathus_amarus_i .........T.................................A......--............................ NC_054262.1_Notropis_jemezanus_v .........T..............................T..A......--............................ Pimephales_notatus_R2S3_________ ...........................................A......--............................ Pimephales_tenellus_tenellu_R2S1 .........T.................................A......--............................ Pimephales_tenellus_parvice_R2S2 .........T.................................A......--............................ Pimephales_notatus_R1S1_________ ...........................................A......--............................ MG570452.1_Pimephales_promelas_i .........T.................................A......--............................ MG570452.1_Pimephales_promelas_S .........T.................................A......--............................ AB626850.1_Megalobrama_terminali GCGGTTAAACGAGAGGCCCTAGTTGATAGCACCACGGCGTAAA-GGGTGGTTAAGGAGAGCAAGATAATTTTTTAAAGCC AP010779.1_Mylocheilus_caurinus_ ...................C........AT..A..........-.............A..TG.A.C..-----....... AP011215.1_Gila_sp._1460_mitocho .............................T..A..........-.............A...-.A....-----....... AP011263.1_Scardinius_erythropht ...................C....A...AT..A-.........-.............A....TA.CG.-----....... AP011267.1_Algansea_lacustris_mi ...........................G.TG.A..........-.............T...G.A.C..-----.....T. AP011268.1_Yuriria_alta_mitochon .............................T..A..........-.............T..TG.C....-----.....T. AP011273.1_Hybognathus_nuchalis_ ..........................C..T..A..........-.............T..A.TA....-----.....T. AP011274.1_Couesius_plumbeus_mit .............................T..A..........-.............AC...TA.C..-----....... AP011275.1_Platygobio_gracilis_m .............................TG.A..........-.............T..TG.A.C..-----.....T. AP011277.1_Erimystax_dissimilis_ ...................C........AT..A.........G-.A...........C..T..A....-----.....T. AP011279.1_Pimephales_promelas_m ............................TT..A..........-.............C.....ATC..-----.....T. AP011280.1_Clinostomus_elongatus ............................-TG.A..........-..............G.TG.A....-----....... AP012079.1_Luxilus_chrysocephalu .............................T..A..........-.............T..T..A.C..-----.....T. AP012080.1_Macrhybopsis_gelida_m ........................A.C..T.TA-.........-.............T..TG.A....-----.....T. AP012083.1_Notropis_atherinoides .............................T.TA..........-.........T...T...G.A....-----.....T. AP012084.1_Notropis_baileyi_mito .............................TG.A..........-.............T..TG.A....-----.....T. AP012087.1_Cyprinella_galactura_ .............................A..AG.........-.............C..T..AC...-----.....T. AP012088.1_Hybopsis_lineapunctat ............................AT.TA..........-.............T.AT..A....-----.....T. AP012090.1_Luxilus_cornutus_mito .............................T..A..........-.............T..T..A.C..-----.....T. AP012091.1_Lythrurus_ardens_mito .............................T..A..........-.............T..TG.AT...-----.....T. AP012092.1_Lythrurus_fumeus_mito .............................T..A..........-.............T..T..AT...-----.....T. AP012093.1_Lythrurus_lirus_mitoc ............................AT..A..........-.A...........T..T..AC...-----.....T. AP012094.1_Lythrurus_umbratilis_ .............................T..A..........-.............T..TG.AT.G.-----.....T. AP012095.1_Macrhybopsis_meeki_mi .............................T.TA-.........G.............T..TG.A....-----.....T. AP012097.1_Notropis_bifrenatus_m ............................AT.TA..........-.............T..TG.A.C..-----.....T. AP012098.1_Pimephales_sp._MCZunc .............................T..A..........-.............T..TG.T....-----.....T. AP012100.1_Notropis_telescopus_m .............................TG.A..........-.............T..TG......-----.....T. AP012101.1_Pimephales_notatus_mi .............................T..A..........-.............T..TG.T....-----.....T. AP012102.1_Pimephales_vigilax_mi ............................AT.TA..........-.............T.ATG.A..G.-----.....TT AP012103.1_Pogonichthys_macrolep ...................C........AT..A..........-.............A...G.A.C..-----....... AP012106.1_Richardsonius_balteat .............................T..A..........-................TG.A.C..-----....... AP012108.1_Notropis_chrosomus_mi .......G.....................T..A..........-.............T..TG......-----.....T. AY216542.1_Lythrurus_umbratilus_ .............................T..A..........-.............T...G..T...-----.....T. Pimephales_vigilax_R1S2_________ ............................AT.TA..........-.............T.ATG.A..G.-----.....TT Pimephales_vigilax_R1S3_________ ............................AT.TA..........-.............T..TG.A..G.-----.....TT DQ536429.1_Notropis_stramineus_m ...................C.........T..A..........-.............T.....A.C..-----.....T. JX910141.1_Squaliobarbus_curricu ............................A...T..........-.............A.....A.C..----........ KC351187.1_Squaliobarbus_curricu ............................A...T..........-.............A.....A.C..----........ KT278765.1_Pimephales_promelas_m .............................T..A..........-.............C...G.ATC..-----.....T. KT289925.1_Pimephales_promelas_m ............................TT..A..........-.............C.....ATC..-----.....T. KT424924.1_Rhinichthys_osculus_m .......G....................AT..A..........-.............T..TG.A....-----.....T. KU200257.1_Chanodichthys_ilishae ............................A..............-...............AT..C...T-........... MF972070.1_Siphateles_bicolor_mo ............................AT..A..........-.............AC..-.A.C..-----....... MG570407.1_Notropis_chalybaeus_v ............................AT..A..........-.............T..TG.A....-----.....TT MG570408.1_Notropis_bifrenatus_v ............................AT.TA..........-.............T..TG.A.C..-----.....T. MG570413.1_Notropis_heterolepis_ .............................T..A..........-.............T..T..A.C..-----.....T. MG570416.1_Rhinichthys_obtusus_v .............................T..A..........-.............T..T..AT...-----.....T. MG570417.1_Rhinichthys_obtusus_v .............................T..A..........-.............T..T..AT...-----.....T. MG570420.1_Pimephales_notatus_vo .............................T..A..........-.............T..TG.T....-----.....T. MG570443.1_Notropis_hudsonius_is .......G....................TT.TAG.........-.............T..TG.A....-----....... MG570444.1_Rhinichthys_atratulus .............................T..A..........-.............T.CT..A....-----.....T. MG570445.1_Rhinichthys_atratulus .............................T..A..........-.............T.CT..A....-----.....T. MG570447.1_Luxilus_cornutus_isol .............................T..A..........-.............T..T..A.C..-----.....T. MG570449.1_Luxilus_cornutus_isol .............................T..A..........-.............T..T..A.C..-----.....T. MG570450.1_Pimephales_notatus_is .............................T..A..........-.............T..TG.T....-----.....T. MG570451.1_Notropis_bifrenatus_i ............................AT.TA..........-.............T..TG.A.C..-----.....T. MG570453.1_Exoglossum_maxillingu ...................C........AT..A.........G-.A...........C..T..A....-----.....T. MG570454.1_Pimephales_promelas_i ............................TT..A..........-.............C.....ATC..-----.....T. MG570455.1_Notropis_atherinoides .............................T..A..........-.........T...T...G.A....-----.....T. MG570456.1_Notropis_atherinoides .............................T.TA..........-.........T...T...G.A....-----.....T. MG570457.1_Pimephales_notatus_is .............................T..A..........-.............T..TG.T....-----.....T. MG570458.1_Pimephales_notatus_is .............................T..A..........-.............T..TG.T....-----.....T. MK421554.1_Parabramis_pekinensis ...........................................-.................................... MT333789.1_Notropis_lutipinnis_v .............................T..A..........-.............T.....A....-----.....T. MT364325.1_Hybognathus_amarus_mi ..........................C.AT..A..........-.............T.TA.TAG.G.-----.....TT MT501368.1_Gila_cypha_isolate_SN .............................T..A..........-.............A...-.A.C..-----.....T. MT501369.1_Notropis_simus_pecose .............................T..A..........-.............T.....A.C..-----.....T. MT501378.1_Hybognathus_amarus_is ..........................C.AT..A..........-.............T.TA.TA..G.-----.....TT MT501385.1_Notropis_jemezanus_vo .............................T..A..........-.........T...T...G.A....-----.....T. MT501391.1_Rhinichthys_osculus_i .......G...................GATG.A..........-.............C..TG.A....-----.....T. MT667239.1_Rhinichthys_osculus_t .......G...................GATGTA..........-.............C..TG.A....-----.....T. MT667242.1_Luxilus_cornutus_vouc .............................T..A..........-.............T..T..A.C..-----.....T. MW300340.1_Hybognathus_placitus_ ........................A.C..T..A..........-.............T.AT.TAG...-----.....T. MW300341.1_Hybognathus_placitus_ ........................A.C..T..A..........-.............TTAT.TAG...-----.....T. NC_013763.1_Mylocheilus_caurinus ...................C........AT..A..........-.............A..TG.A.C..-----....... NC_033926.1_Opsopoeodus_emiliae_ ............................A-.TAG.........-.............T.AT-.A....-----.....T. NC_037008.1_Notropis_chalybaeus_ ............................AT..A..........-.............T..TG.A....-----.....TT NC_037009.1_Notropis_heterolepis .............................T..A..........-.............T..T..A.C..-----.....T. NC_037010.1_Rhinichthys_obtusus_ .............................T..A..........-.............T..T..AT...-----.....T. NC_037014.1_Notropis_hudsonius_i .......G....................TT.TAG.........-.............T..TG.A....-----....... NC_037015.1_Exoglossum_maxilling ...................C........AT..A.........G-.A...........C..T..A....-----.....T. NC_054086.1_Ptychocheilus_lucius .............................T..A..........-.............AC....AG-..-----....... NC_054257.1_Gila_cypha_isolate_S .............................T..A..........-.............A...-.A.C..-----.....T. NC_054259.1_Gila_nigrescens_isol .............................T..A..........-.............A...-.A.C..-----....... NC_054260.1_Hybognathus_amarus_i ..........................C.AT..A..........-.............T.TA.TA..G.-----.....TT NC_054262.1_Notropis_jemezanus_v .............................T..A..........-.........T...T...G.A....-----.....T. Pimephales_notatus_R2S3_________ ...........................GAT..A..........-.............T..TG.A....-----.....T. Pimephales_tenellus_tenellu_R2S1 ............................AT.TA..........-.............T..TG.A....-----.....T. Pimephales_tenellus_parvice_R2S2 ............................AT.TA..........-............GT..TG.A....-----.....T. Pimephales_notatus_R1S1_________ ...........................GAT..AG.........-.............T..TG.A....-----.....T. MG570452.1_Pimephales_promelas_i ............................TT..A..........-.............C.....ATC..-----.....T. MG570452.1_Pimephales_promelas_S ............................TT..A..........-.............C.....ATC..-----.....T. AB626850.1_Megalobrama_terminali AAATGGCCCTTTGGCCGTCATACGCTTCTAGGTGTCCGAAGCCCAATCATACGAAAGTAGCTTTAATAAAGCCCACCTGA AP010779.1_Mylocheilus_caurinus_ ...............T................A........T.....-.................GA..G.......... AP011215.1_Gila_sp._1460_mitocho ...............T..................C............-.................GA............. AP011263.1_Scardinius_erythropht G..............T...............................-.................G.............. AP011267.1_Algansea_lacustris_mi G..............T................A..............-..................G....T........ AP011268.1_Yuriria_alta_mitochon G..............T................A..............-.................GA............. AP011273.1_Hybognathus_nuchalis_ G..............T................A..............-...........A......A............. AP011274.1_Couesius_plumbeus_mit G..............T.........................T.....-.................GA............. AP011275.1_Platygobio_gracilis_m G..............T................A..............-.................GG....T........ AP011277.1_Erimystax_dissimilis_ G........C.....T................A..............-...........A.....GG............. AP011279.1_Pimephales_promelas_m G..............T................A........T.....-...........A......G..T.......... AP011280.1_Clinostomus_elongatus G..............T................A..............-.................GG....T........ AP012079.1_Luxilus_chrysocephalu G..............T................A..............-...........A......C............. AP012080.1_Macrhybopsis_gelida_m G..............T................A..............-..................A............. AP012083.1_Notropis_atherinoides G..............T................A............G.-...........A......G............. AP012084.1_Notropis_baileyi_mito G........C.....T...............................-..................G............. AP012087.1_Cyprinella_galactura_ G..............T................A...T....T...GA-...........A.....GA.T........... AP012088.1_Hybopsis_lineapunctat G..............T................A.............C-...........A......-............. AP012090.1_Luxilus_cornutus_mito G..............T................A..............-...........A......C............. AP012091.1_Lythrurus_ardens_mito G..............T................A..............-...........A......G....T........ AP012092.1_Lythrurus_fumeus_mito G..............T................A..............T.C.........A......A............. AP012093.1_Lythrurus_lirus_mitoc G..............T................A..............-...........A......G....T........ AP012094.1_Lythrurus_umbratilis_ G..............T................A..............-...........A......G....T........ AP012095.1_Macrhybopsis_meeki_mi ...............T................A..............-..................G............. AP012097.1_Notropis_bifrenatus_m G..............T................A............G.-...........A.....--...A......... AP012098.1_Pimephales_sp._MCZunc G..............T................A............G.-...........A......G.G.A......... AP012100.1_Notropis_telescopus_m G..............T................A.............C-...........A......AG.T.......... AP012101.1_Pimephales_notatus_mi G..............T................A............G.-...........A......G.G.A..A...... AP012102.1_Pimephales_vigilax_mi ...............T.............G..A.......AT.T...-...........A......G............. AP012103.1_Pogonichthys_macrolep G..............T................A........T.....-.................GAG............ AP012106.1_Richardsonius_balteat ...............T................A..............-.................GA.C........... AP012108.1_Notropis_chrosomus_mi G..............T................A.............C-..................-....T........ AY216542.1_Lythrurus_umbratilus_ G..............T................A.C.........G..-...........A......G.G..T........ Pimephales_vigilax_R1S2_________ ...............T.............G..A.......AT.T...-...........A......G............. Pimephales_vigilax_R1S3_________ ...............T.............G..A.......AT.T...-...........A......G............. DQ536429.1_Notropis_stramineus_m G..............T................A.C..........GC-...........A.....GG....T........ JX910141.1_Squaliobarbus_curricu .................................................C...............T.............. KC351187.1_Squaliobarbus_curricu .................................................C...............T.............. KT278765.1_Pimephales_promelas_m G..............T..T.............A........T.....-...........A......G..C.......... KT289925.1_Pimephales_promelas_m G..............T................A..............-...........A......G..T.......... KT424924.1_Rhinichthys_osculus_m G..............T................A.............A-.................GA..........C.. KU200257.1_Chanodichthys_ilishae ...............................................T.C.......C...................... MF972070.1_Siphateles_bicolor_mo G..............T...............................-..................G............. MG570407.1_Notropis_chalybaeus_v G..............T................A..............-..................G............. MG570408.1_Notropis_bifrenatus_v G..............T................A............G.-...........A.....--...A......... MG570413.1_Notropis_heterolepis_ G..............T................A..............-...........A......G............. MG570416.1_Rhinichthys_obtusus_v G..............T................A..............-..................G............. MG570417.1_Rhinichthys_obtusus_v G..............T................A..............-..................G............. MG570420.1_Pimephales_notatus_vo G..............T................A............G.-...........A......G.G.A......... MG570443.1_Notropis_hudsonius_is G..............T................A..............-..................AG...T........ MG570444.1_Rhinichthys_atratulus G..............T................A...........G..-.................GG............. MG570445.1_Rhinichthys_atratulus G..............T................A...........G..-.................GG............. MG570447.1_Luxilus_cornutus_isol G..............T................A..............-...........A......C............. MG570449.1_Luxilus_cornutus_isol G..............T................A..............-...........A......C............. MG570450.1_Pimephales_notatus_is G..............T................A............G.-...........A......G.G.A......... MG570451.1_Notropis_bifrenatus_i G..............T................A............G.-...........A......-............. MG570453.1_Exoglossum_maxillingu G........C.....T................A..............-...........A.....GG............. MG570454.1_Pimephales_promelas_i G..............T................A..............-...........A......G..T.......... MG570455.1_Notropis_atherinoides G..............T................A............G.-...........A......G............. MG570456.1_Notropis_atherinoides G..............T................A............G.-...........A......G............. MG570457.1_Pimephales_notatus_is G..............T................A............G.-...........A......G.G.A......... MG570458.1_Pimephales_notatus_is G..............T................A............G.-...........A......G.G.A......... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...............T................A.............C-..................G............. MT364325.1_Hybognathus_amarus_mi G..............T................A..............-...........A......A.G........... MT501368.1_Gila_cypha_isolate_SN ...............T...............................-.................GA............. MT501369.1_Notropis_simus_pecose G..............T................A..............-..................G............. MT501378.1_Hybognathus_amarus_is G..............T................A..............-...........A......A.G........... MT501385.1_Notropis_jemezanus_vo ...............T................A..............-...........A......G............. MT501391.1_Rhinichthys_osculus_i G..............T................A..............-.................GA.C........... MT667239.1_Rhinichthys_osculus_t G..............T................A..............-.................GA.C........... MT667242.1_Luxilus_cornutus_vouc G..............T................A..............-...........A......C............. MW300340.1_Hybognathus_placitus_ ...............T................A........T.....-...........A......G............. MW300341.1_Hybognathus_placitus_ ...............T................A........T.....-...........A......G............. NC_013763.1_Mylocheilus_caurinus ...............T................A........T.....-.................GA..G.......... NC_033926.1_Opsopoeodus_emiliae_ GC.............T.............G..A.C......T.....-...........A......G............. NC_037008.1_Notropis_chalybaeus_ G..............T................A..............-..................G............. NC_037009.1_Notropis_heterolepis G..............T................A..............-...........A......G............. NC_037010.1_Rhinichthys_obtusus_ G..............T................A..............-..................G............. NC_037014.1_Notropis_hudsonius_i G..............T................A..............-..................AG...T........ NC_037015.1_Exoglossum_maxilling G........C.....T................A..............-...........A.....GG............. NC_054086.1_Ptychocheilus_lucius ...............T...............................-.................GAG............ NC_054257.1_Gila_cypha_isolate_S ...............T...............................-.................GA............. NC_054259.1_Gila_nigrescens_isol ...............T...............................-.................GA............. NC_054260.1_Hybognathus_amarus_i G..............T................A..............-...........A......A.G........... NC_054262.1_Notropis_jemezanus_v ...............T................A..............-...........A......G............. Pimephales_notatus_R2S3_________ G..............T................A..............-...........A......G....T........ Pimephales_tenellus_tenellu_R2S1 G..............T................A..............-...........A......G............. Pimephales_tenellus_parvice_R2S2 G..............T................A..............-...........A......G............. Pimephales_notatus_R1S1_________ G..............T................A..............-...........A......G....T........ MG570452.1_Pimephales_promelas_i G..............T................A..............-...........A......G..T.......... MG570452.1_Pimephales_promelas_S G..............T................A........T.....-...........A......G..T.......... AB626850.1_Megalobrama_terminali CCCCACGAAAGCTGAGAAACAAACTGGGATTAGATACCCCACTATGCTCAGCCATAAACCTAGACATCCAACTACAATTA AP010779.1_Mylocheilus_caurinus_ .....................................................G.........G.G.............. AP011215.1_Gila_sp._1460_mitocho .A..............................................................TG.............. AP011263.1_Scardinius_erythropht .................................................................G....G......... AP011267.1_Algansea_lacustris_mi ..........A........................................T........C...TG.............. AP011268.1_Yuriria_alta_mitochon ..........A........................................T........C....G....G......... AP011273.1_Hybognathus_nuchalis_ ..........A........................................T........C....G.............. AP011274.1_Couesius_plumbeus_mit .............................................................T...G.............- AP011275.1_Platygobio_gracilis_m ..........A........................................T........C....G...G.......... AP011277.1_Erimystax_dissimilis_ .................................................................G.............. AP011279.1_Pimephales_promelas_m .........................A..................................C....G.............. AP011280.1_Clinostomus_elongatus ................G..............................................G.G.............. AP012079.1_Luxilus_chrysocephalu ..........A........................................T........C....G....G.......C. AP012080.1_Macrhybopsis_gelida_m ..........A........................................T........C....G............A. AP012083.1_Notropis_atherinoides ..........A.....G..................................T........C....G....G.......C. AP012084.1_Notropis_baileyi_mito ..........A........................................T........C....G..T.T.......C. AP012087.1_Cyprinella_galactura_ ..........A........................................TT.......C....G.............. AP012088.1_Hybopsis_lineapunctat ..........A........................................T........C....G....G........T AP012090.1_Luxilus_cornutus_mito ..........A........................................T........C....GC...........C. AP012091.1_Lythrurus_ardens_mito ..........A........................................T.C......C..G.G.............. AP012092.1_Lythrurus_fumeus_mito ..........A........................................T........C....G.............. AP012093.1_Lythrurus_lirus_mitoc ..........A........................................T.C......C....G.............. AP012094.1_Lythrurus_umbratilis_ ..........A........................................T.C......C....G.............. AP012095.1_Macrhybopsis_meeki_mi ..........A........................................T........C....G.............. AP012097.1_Notropis_bifrenatus_m ..........A........................................T........C....G.............. AP012098.1_Pimephales_sp._MCZunc ..........A........................................T........C....G...G.......... AP012100.1_Notropis_telescopus_m ..........A........................................T.............G....G......... AP012101.1_Pimephales_notatus_mi ..........A........................................T........C....G.............. AP012102.1_Pimephales_vigilax_mi ..........A......................................G.T.G..........TG.............. AP012103.1_Pogonichthys_macrolep ...............................................................G.G.............. AP012106.1_Richardsonius_balteat ...............................................................G.G.............. AP012108.1_Notropis_chrosomus_mi ..........A........................................TT.......C....G..T.G.......C. AY216542.1_Lythrurus_umbratilus_ A.........A.................................................C....G.............. Pimephales_vigilax_R1S2_________ ..........A......................................G.T.G..........TG.............. Pimephales_vigilax_R1S3_________ ..........A......................................G.T.G..........TG.............. DQ536429.1_Notropis_stramineus_m ..........A........................................T........C...TG....G......... JX910141.1_Squaliobarbus_curricu .......................................................................A........ KC351187.1_Squaliobarbus_curricu .......................................................................A........ KT278765.1_Pimephales_promelas_m ...................................................T........C....G....G......... KT289925.1_Pimephales_promelas_m ............................................................C....G.............. KT424924.1_Rhinichthys_osculus_m T....................................................G......A....G.T............ KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo .A..............................................................TG....G......... MG570407.1_Notropis_chalybaeus_v ..........A........................................TT.......C....G.............. MG570408.1_Notropis_bifrenatus_v ..........A........................................T........C....G.............. MG570413.1_Notropis_heterolepis_ ..........A.....G..................................T........C....G.............. MG570416.1_Rhinichthys_obtusus_v ............................................................C..G.G..G.......G... MG570417.1_Rhinichthys_obtusus_v ............................................................C..G.G..G.......G... MG570420.1_Pimephales_notatus_vo ..........A........................................T........C....G...G.......... MG570443.1_Notropis_hudsonius_is ..........A........................................T........C....G.............. MG570444.1_Rhinichthys_atratulus ............................................................C..G.G..G.......G... MG570445.1_Rhinichthys_atratulus ............................................................C..G.G..G.......G... MG570447.1_Luxilus_cornutus_isol ..........A........................................T........C....GC...........C. MG570449.1_Luxilus_cornutus_isol ..........A........................................T........C....GC...........C. MG570450.1_Pimephales_notatus_is ..........A........................................T........C....G...G.......... MG570451.1_Notropis_bifrenatus_i ..........A........................................T........C....G.............. MG570453.1_Exoglossum_maxillingu .................................................................G.............. MG570454.1_Pimephales_promelas_i ............................................................C....G.............. MG570455.1_Notropis_atherinoides ..........A.....G..................................T........C....G....G.......C. MG570456.1_Notropis_atherinoides ..........A.....G..................................T........C....G....G.......C. MG570457.1_Pimephales_notatus_is ..........A........................................T........C....G...GG......... MG570458.1_Pimephales_notatus_is ..........A........................................T........C....G...G.......... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ........G.A........................................TT.......C....G..T.G.......C. MT364325.1_Hybognathus_amarus_mi ..........A........................................T........C....G....G.....G... MT501368.1_Gila_cypha_isolate_SN .A..............................................................TG.............. MT501369.1_Notropis_simus_pecose ..........A........................................T........C....G....C.......C. MT501378.1_Hybognathus_amarus_is ..........A........................................T........C....G....G.....G... MT501385.1_Notropis_jemezanus_vo ..........A.....G..................................T........C....G............C. MT501391.1_Rhinichthys_osculus_i ........G...................................................C....G.............. MT667239.1_Rhinichthys_osculus_t ........G...................................................C....G.............. MT667242.1_Luxilus_cornutus_vouc ..........A........................................T........C....GC...........C. MW300340.1_Hybognathus_placitus_ ..........A.....G..................................TT.......C....G.............. MW300341.1_Hybognathus_placitus_ ..........A.....G..................................TT.......C....G.............. NC_013763.1_Mylocheilus_caurinus .....................................................G.........G.G.............. NC_033926.1_Opsopoeodus_emiliae_ .................C..........................................A....G..T.C........G NC_037008.1_Notropis_chalybaeus_ ..........A........................................TT.......C....G.............. NC_037009.1_Notropis_heterolepis ..........A.....G..................................T........C....G.............. NC_037010.1_Rhinichthys_obtusus_ ............................................................C..G.G..G.......G... NC_037014.1_Notropis_hudsonius_i ..........A........................................T........C....G.............. NC_037015.1_Exoglossum_maxilling .................................................................G.............. NC_054086.1_Ptychocheilus_lucius .A..............................................................TG.............. NC_054257.1_Gila_cypha_isolate_S .A..............................................................TG.............. NC_054259.1_Gila_nigrescens_isol .A..............................................................TG.............. NC_054260.1_Hybognathus_amarus_i ..........A........................................T........C....G....G.....G... NC_054262.1_Notropis_jemezanus_v ..........A.....G..................................T........C....G............C. Pimephales_notatus_R2S3_________ ..........A......G.................................T........C....G.............. Pimephales_tenellus_tenellu_R2S1 ..........A........................................T........C....G....G......... Pimephales_tenellus_parvice_R2S2 ..........A.................................................C....G....G......... Pimephales_notatus_R1S1_________ ..........A......G.................................T........C....G.............. MG570452.1_Pimephales_promelas_i ............................................................C....G.............. MG570452.1_Pimephales_promelas_S .........................A..................................C....G.............. AB626850.1_Megalobrama_terminali GATGTCCGCCCGGGTACTACGAGCATCAGCTTGAAACCCAAAGGACCTGACGGTGCCTCAGACCCCCCTAGAGGAGCCTG AP010779.1_Mylocheilus_caurinus_ ..C.......................T..................................................... AP011215.1_Gila_sp._1460_mitocho .CCA......................T...............................T..................... AP011263.1_Scardinius_erythropht ..C.......................T...............................T..................... AP011267.1_Algansea_lacustris_mi ..CA......................T..................................................... AP011268.1_Yuriria_alta_mitochon ..C.......................T..................................................... AP011273.1_Hybognathus_nuchalis_ .GC.......................T..................................................... AP011274.1_Couesius_plumbeus_mit ..C.......................T...............A...............T..................... AP011275.1_Platygobio_gracilis_m ..C.......................T..................................................... AP011277.1_Erimystax_dissimilis_ .GC.......................T.....A........G...................................... AP011279.1_Pimephales_promelas_m ..C.......................T............G........................................ AP011280.1_Clinostomus_elongatus ..C.......................T..................................................... AP012079.1_Luxilus_chrysocephalu ..C.......................T..................................................... AP012080.1_Macrhybopsis_gelida_m ..C...........A...........T..................................................... AP012083.1_Notropis_atherinoides .GC.......................T..................................................... AP012084.1_Notropis_baileyi_mito .GC.......................T..................................................... AP012087.1_Cyprinella_galactura_ .GC.......................T..................................................... AP012088.1_Hybopsis_lineapunctat ..C.......................T..................................................... AP012090.1_Luxilus_cornutus_mito .GC.......................T..................................................... AP012091.1_Lythrurus_ardens_mito ..C.......................T..................................................... AP012092.1_Lythrurus_fumeus_mito ..CA......................T..................................................... AP012093.1_Lythrurus_lirus_mitoc ..C.......................T..................................................... AP012094.1_Lythrurus_umbratilis_ ..C.......................T..................................................... AP012095.1_Macrhybopsis_meeki_mi ..C...........A...........T..................................................... AP012097.1_Notropis_bifrenatus_m ..C.......................T..................................................... AP012098.1_Pimephales_sp._MCZunc .GC.......................T..................................................... AP012100.1_Notropis_telescopus_m ..C.......................T..................................................... AP012101.1_Pimephales_notatus_mi .GC.......................T..................................................... AP012102.1_Pimephales_vigilax_mi AGCA......................T..................................................... AP012103.1_Pogonichthys_macrolep ..C.......................T..................................................... AP012106.1_Richardsonius_balteat ..C.......................T..............G...................................... AP012108.1_Notropis_chrosomus_mi .GC.......................T..................................................... AY216542.1_Lythrurus_umbratilus_ ..C.......................T..................................................... Pimephales_vigilax_R1S2_________ AGCA......................T..................................................... Pimephales_vigilax_R1S3_________ AGCA......................T..................................................... DQ536429.1_Notropis_stramineus_m .GCA......................T..................................................... JX910141.1_Squaliobarbus_curricu ..C.......................T...............................T..................... KC351187.1_Squaliobarbus_curricu ..C.......................T...............................T..................... KT278765.1_Pimephales_promelas_m ..C.......................T............G........................................ KT289925.1_Pimephales_promelas_m ..C.......................T............G........................................ KT424924.1_Rhinichthys_osculus_m ..C.......................T..................................................... KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo ..CA......................T...............................T..................... MG570407.1_Notropis_chalybaeus_v .GC.......................T..................................................... MG570408.1_Notropis_bifrenatus_v ..C.......................T..................................................... MG570413.1_Notropis_heterolepis_ .GC.......................T..................................................... MG570416.1_Rhinichthys_obtusus_v ..C.......................T..................................................... MG570417.1_Rhinichthys_obtusus_v ..C.......................T..................................................... MG570420.1_Pimephales_notatus_vo .GC.......................T..................................................... MG570443.1_Notropis_hudsonius_is ..C.......................T..................................................... MG570444.1_Rhinichthys_atratulus ..C.......................T..................................................... MG570445.1_Rhinichthys_atratulus ..C.......................T..................................................... MG570447.1_Luxilus_cornutus_isol .GC.......................T..................................................... MG570449.1_Luxilus_cornutus_isol .GC.......................T..................................................... MG570450.1_Pimephales_notatus_is .GC.......................T..................................................... MG570451.1_Notropis_bifrenatus_i ..C.......................T..................................................... MG570453.1_Exoglossum_maxillingu .GC.......................T.....A........G...................................... MG570454.1_Pimephales_promelas_i ..C.......................T............G........................................ MG570455.1_Notropis_atherinoides .GC.......................T..................................................... MG570456.1_Notropis_atherinoides .GC.......................T..................................................... MG570457.1_Pimephales_notatus_is .GC.......................T..................................................... MG570458.1_Pimephales_notatus_is .GC.......................T..................................................... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..C.......................T..................................................... MT364325.1_Hybognathus_amarus_mi ..C.......................T..................................................... MT501368.1_Gila_cypha_isolate_SN .CCA......................T...............................T..................... MT501369.1_Notropis_simus_pecose .GC.......................T..................................................... MT501378.1_Hybognathus_amarus_is ..C.......................T..................................................... MT501385.1_Notropis_jemezanus_vo ..C.......................T..................................................... MT501391.1_Rhinichthys_osculus_i ..........................T..................................................... MT667239.1_Rhinichthys_osculus_t ..........................T..................................................... MT667242.1_Luxilus_cornutus_vouc .GC.......................T..................................................... MW300340.1_Hybognathus_placitus_ ..C.......................T..................................................... MW300341.1_Hybognathus_placitus_ ..C.......................T..................................................... NC_013763.1_Mylocheilus_caurinus ..C.......................T..................................................... NC_033926.1_Opsopoeodus_emiliae_ .GC.......T...............T.....A............................................... NC_037008.1_Notropis_chalybaeus_ .GC.......................T..................................................... NC_037009.1_Notropis_heterolepis .GC.......................T..................................................... NC_037010.1_Rhinichthys_obtusus_ ..C.......................T..................................................... NC_037014.1_Notropis_hudsonius_i ..C.......................T..................................................... NC_037015.1_Exoglossum_maxilling .GC.......................T.....A........G...................................... NC_054086.1_Ptychocheilus_lucius .CCA......................T...............................T..................... NC_054257.1_Gila_cypha_isolate_S .CCA......................T...............................T..................... NC_054259.1_Gila_nigrescens_isol .CCA......................T...............................T..................... NC_054260.1_Hybognathus_amarus_i ..C.......................T..................................................... NC_054262.1_Notropis_jemezanus_v ..C.......................T..................................................... Pimephales_notatus_R2S3_________ .GC.......................T..................................................... Pimephales_tenellus_tenellu_R2S1 .GC.......................T...................................T................. Pimephales_tenellus_parvice_R2S2 .GC.......................T..................................................... Pimephales_notatus_R1S1_________ .GC.......................T..................................................... MG570452.1_Pimephales_promelas_i ..C.......................T............G........................................ MG570452.1_Pimephales_promelas_S ..C.......................T............G........................................ AB626850.1_Megalobrama_terminali TTCTAGAACCGATAACCCCCGTTAAACCTCACCACTTCTAGCCATCCCAGCCTATATACCGCCGTCGTCAGCTTACCCTG AP010779.1_Mylocheilus_caurinus_ ............................................C................................... AP011215.1_Gila_sp._1460_mitocho ..................T..............G.............................................. AP011263.1_Scardinius_erythropht ............................................C................................... AP011267.1_Algansea_lacustris_mi ..................T..............G.............................................. AP011268.1_Yuriria_alta_mitochon .................................G..........C................................... AP011273.1_Hybognathus_nuchalis_ ................................................................................ AP011274.1_Couesius_plumbeus_mit ..................T.........................C................................... AP011275.1_Platygobio_gracilis_m ................................................................................ AP011277.1_Erimystax_dissimilis_ ............................................C................................... AP011279.1_Pimephales_promelas_m .................................G.............................................. AP011280.1_Clinostomus_elongatus ............................................C................................... AP012079.1_Luxilus_chrysocephalu .................................G.............................................. AP012080.1_Macrhybopsis_gelida_m .................................G.............................................. AP012083.1_Notropis_atherinoides .................................G.............................................. AP012084.1_Notropis_baileyi_mito ................................................................................ AP012087.1_Cyprinella_galactura_ .................................G.............................................. AP012088.1_Hybopsis_lineapunctat .................................G.C............................................ AP012090.1_Luxilus_cornutus_mito .................................G.............................................. AP012091.1_Lythrurus_ardens_mito .......................G.........G.............................................. AP012092.1_Lythrurus_fumeus_mito ................................................................................ AP012093.1_Lythrurus_lirus_mitoc .......................G.........G.............................................. AP012094.1_Lythrurus_umbratilis_ .................................G.............................................. AP012095.1_Macrhybopsis_meeki_mi .................................G.............................................. AP012097.1_Notropis_bifrenatus_m .............................................T.................................. AP012098.1_Pimephales_sp._MCZunc .................................G.............................................. AP012100.1_Notropis_telescopus_m .................................G.............................................. AP012101.1_Pimephales_notatus_mi .................................G.............................................. AP012102.1_Pimephales_vigilax_mi .................................G.........G.................................... AP012103.1_Pogonichthys_macrolep ............................................C................................... AP012106.1_Richardsonius_balteat ............................................C................................... AP012108.1_Notropis_chrosomus_mi .................................G.............................................. AY216542.1_Lythrurus_umbratilus_ .......................G.........G.............................................. Pimephales_vigilax_R1S2_________ .................................G.........G.................................... Pimephales_vigilax_R1S3_________ .................................G.........G.................................... DQ536429.1_Notropis_stramineus_m .................................G.............................................. JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m .................................G.............................................. KT289925.1_Pimephales_promelas_m .................................G.............................................. KT424924.1_Rhinichthys_osculus_m .......................T........................................................ KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo ..................T.........................C................................... MG570407.1_Notropis_chalybaeus_v .................................G.............................................. MG570408.1_Notropis_bifrenatus_v .............................................T.................................. MG570413.1_Notropis_heterolepis_ .................................G.............................................. MG570416.1_Rhinichthys_obtusus_v ............................................C................................... MG570417.1_Rhinichthys_obtusus_v ............................................C................................... MG570420.1_Pimephales_notatus_vo .................................G.............................................. MG570443.1_Notropis_hudsonius_is ................................................................................ MG570444.1_Rhinichthys_atratulus ............................................C................................... MG570445.1_Rhinichthys_atratulus ............................................C................................... MG570447.1_Luxilus_cornutus_isol .................................G.............................................. MG570449.1_Luxilus_cornutus_isol .................................G.............................................. MG570450.1_Pimephales_notatus_is .................................G.............................................. MG570451.1_Notropis_bifrenatus_i .............................................T.................................. MG570453.1_Exoglossum_maxillingu ............................................C................................... MG570454.1_Pimephales_promelas_i .................................G.............................................. MG570455.1_Notropis_atherinoides .................................G.............................................. MG570456.1_Notropis_atherinoides .................................G.............................................. MG570457.1_Pimephales_notatus_is .................................G.............................................. MG570458.1_Pimephales_notatus_is .................................G.............................................. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ................................................................................ MT364325.1_Hybognathus_amarus_mi .................................G.............................................. MT501368.1_Gila_cypha_isolate_SN ..................T............................................................. MT501369.1_Notropis_simus_pecose ..................T..............G.............................................. MT501378.1_Hybognathus_amarus_is ................................................................................ MT501385.1_Notropis_jemezanus_vo .................................G.............................................. MT501391.1_Rhinichthys_osculus_i ............................................C................................... MT667239.1_Rhinichthys_osculus_t ............................................C................................... MT667242.1_Luxilus_cornutus_vouc .................................G.............................................. MW300340.1_Hybognathus_placitus_ .................................G.............................................. MW300341.1_Hybognathus_placitus_ .................................G.............................................. NC_013763.1_Mylocheilus_caurinus ............................................C................................... NC_033926.1_Opsopoeodus_emiliae_ .................................G.......T.........................C............ NC_037008.1_Notropis_chalybaeus_ .................................G.............................................. NC_037009.1_Notropis_heterolepis .................................G.............................................. NC_037010.1_Rhinichthys_obtusus_ ............................................C................................... NC_037014.1_Notropis_hudsonius_i ................................................................................ NC_037015.1_Exoglossum_maxilling ............................................C................................... NC_054086.1_Ptychocheilus_lucius ..................T..............G.............................................. NC_054257.1_Gila_cypha_isolate_S ..................T............................................................. NC_054259.1_Gila_nigrescens_isol ..................T............................................................. NC_054260.1_Hybognathus_amarus_i .................................G.............................................. NC_054262.1_Notropis_jemezanus_v .................................G.............................................. Pimephales_notatus_R2S3_________ .................................G.............................................. Pimephales_tenellus_tenellu_R2S1 .................................G.............................................. Pimephales_tenellus_parvice_R2S2 .................................G.............................................. Pimephales_notatus_R1S1_________ .................................G.............................................. MG570452.1_Pimephales_promelas_i .................................G.............................................. MG570452.1_Pimephales_promelas_S .................................G.............................................. AB626850.1_Megalobrama_terminali TGAAGGTAATAAAAGTAAGCAAAATGGGCACAACCCAGAACGTCAGGTCGAGGTGTAGCGTACGAAGTGGGAAGAAATGG AP010779.1_Mylocheilus_caurinus_ ......C............................................................C............ AP011215.1_Gila_sp._1460_mitocho ......C............................................................C............ AP011263.1_Scardinius_erythropht ......C...............G.........G..................................C............ AP011267.1_Algansea_lacustris_mi ................................................................G..C............ AP011268.1_Yuriria_alta_mitochon ......C.........................................................G..C............ AP011273.1_Hybognathus_nuchalis_ ......C............................................................C............ AP011274.1_Couesius_plumbeus_mit ......C......................................................................... AP011275.1_Platygobio_gracilis_m ......C............................................................C............ AP011277.1_Erimystax_dissimilis_ ......C............................................................C............ AP011279.1_Pimephales_promelas_m ......C.........................G..................................C............ AP011280.1_Clinostomus_elongatus ............................................................A......C............ AP012079.1_Luxilus_chrysocephalu ......C............................................................C............ AP012080.1_Macrhybopsis_gelida_m ......C............................................................C............ AP012083.1_Notropis_atherinoides ......C............................................................C............ AP012084.1_Notropis_baileyi_mito ......C.....................T...............................A......C............ AP012087.1_Cyprinella_galactura_ ......C............................................................C............ AP012088.1_Hybopsis_lineapunctat ............................................................C....G.C............ AP012090.1_Luxilus_cornutus_mito ......C..............G.............................................C............ AP012091.1_Lythrurus_ardens_mito ......C............................................................C............ AP012092.1_Lythrurus_fumeus_mito ......C......................................................................... AP012093.1_Lythrurus_lirus_mitoc ......C............................................................C............ AP012094.1_Lythrurus_umbratilis_ ......C............................................................C............ AP012095.1_Macrhybopsis_meeki_mi ......C.........................................................G..C............ AP012097.1_Notropis_bifrenatus_m ......C......................................................................... AP012098.1_Pimephales_sp._MCZunc ......C....................................................AC......C............ AP012100.1_Notropis_telescopus_m ..............................T....................................C............ AP012101.1_Pimephales_notatus_mi ......C.....................................................C......C............ AP012102.1_Pimephales_vigilax_mi .......GT............................A......................C......C............ AP012103.1_Pogonichthys_macrolep ......C............................................................C............ AP012106.1_Richardsonius_balteat ......C............................................................C............ AP012108.1_Notropis_chrosomus_mi ......C.......................A.............................A......C............ AY216542.1_Lythrurus_umbratilus_ ......C............................................................C............ Pimephales_vigilax_R1S2_________ .......GT............................A......................C......C............ Pimephales_vigilax_R1S3_________ .......GT............................A......................C......C............ DQ536429.1_Notropis_stramineus_m ......C............................................................C............ JX910141.1_Squaliobarbus_curricu ......C..C..................................................C................... KC351187.1_Squaliobarbus_curricu ......C..C..................................................C................... KT278765.1_Pimephales_promelas_m ......C............................................................C............ KT289925.1_Pimephales_promelas_m ......C..............G.............................................C............ KT424924.1_Rhinichthys_osculus_m ......C............................................................C............ KU200257.1_Chanodichthys_ilishae ............................................................C................... MF972070.1_Siphateles_bicolor_mo ......C............................................................C............ MG570407.1_Notropis_chalybaeus_v ......C....................A................................A......C............ MG570408.1_Notropis_bifrenatus_v ......C......................................................................... MG570413.1_Notropis_heterolepis_ ......C............................................................C............ MG570416.1_Rhinichthys_obtusus_v ......C............................................................C............ MG570417.1_Rhinichthys_obtusus_v ......C............................................................C............ MG570420.1_Pimephales_notatus_vo ......C....................................................AC......C............ MG570443.1_Notropis_hudsonius_is ......C............................................................C............ MG570444.1_Rhinichthys_atratulus ......C............................................................C............ MG570445.1_Rhinichthys_atratulus ......C............................................................C............ MG570447.1_Luxilus_cornutus_isol ......C..............G.............................................C............ MG570449.1_Luxilus_cornutus_isol ......C..............G.............................................C............ MG570450.1_Pimephales_notatus_is ......C....................................................AC......C............ MG570451.1_Notropis_bifrenatus_i ......C......................................................................... MG570453.1_Exoglossum_maxillingu ......C............................................................C............ MG570454.1_Pimephales_promelas_i ......C..............G.............................................C............ MG570455.1_Notropis_atherinoides ......C............................................................C............ MG570456.1_Notropis_atherinoides ......C............................................................C............ MG570457.1_Pimephales_notatus_is ......C....................................................AC......C............ MG570458.1_Pimephales_notatus_is ......C.....................................................C......C............ MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ......C..............G.....................................CA......C............ MT364325.1_Hybognathus_amarus_mi .......G.............G.............................................C............ MT501368.1_Gila_cypha_isolate_SN ......C............................................................C............ MT501369.1_Notropis_simus_pecose ......-.....................................................A......C............ MT501378.1_Hybognathus_amarus_is .....................G.............................................C............ MT501385.1_Notropis_jemezanus_vo ......C............................................................C............ MT501391.1_Rhinichthys_osculus_i ......C............................................................C............ MT667239.1_Rhinichthys_osculus_t ......C.........................G..................................C............ MT667242.1_Luxilus_cornutus_vouc ......C..............G.............................................C............ MW300340.1_Hybognathus_placitus_ ...................................................................C............ MW300341.1_Hybognathus_placitus_ ...................................................................C............ NC_013763.1_Mylocheilus_caurinus ......C............................................................C............ NC_033926.1_Opsopoeodus_emiliae_ ......C...-.................................................C......C............ NC_037008.1_Notropis_chalybaeus_ ......C....................A................................A......C............ NC_037009.1_Notropis_heterolepis ......C............................................................C............ NC_037010.1_Rhinichthys_obtusus_ ......C............................................................C............ NC_037014.1_Notropis_hudsonius_i ......C............................................................C............ NC_037015.1_Exoglossum_maxilling ......C............................................................C............ NC_054086.1_Ptychocheilus_lucius ......C............................................................C............ NC_054257.1_Gila_cypha_isolate_S ......C............................................................C............ NC_054259.1_Gila_nigrescens_isol ......C............................................................C............ NC_054260.1_Hybognathus_amarus_i .....................G.............................................C............ NC_054262.1_Notropis_jemezanus_v ......C............................................................C............ Pimephales_notatus_R2S3_________ ......C.....................................................C......C............ Pimephales_tenellus_tenellu_R2S1 ............................T.A.............................C......C............ Pimephales_tenellus_parvice_R2S2 ............................T.A.............................C......C............ Pimephales_notatus_R1S1_________ ......C.....................................................C......C............ MG570452.1_Pimephales_promelas_i ......C..............G.............................................C............ MG570452.1_Pimephales_promelas_S ......C.........................G..................................C............ AB626850.1_Megalobrama_terminali GCTACATTTTCTATCACAGAACACTACGAACATGCAACATGAAATAGTGCTTGAAGGAGGATTTAGTAGTAAAAAGGAAG AP010779.1_Mylocheilus_caurinus_ ..............T.T...........G.T................................................A AP011215.1_Gila_sp._1460_mitocho ................T...........G.T................................................A AP011263.1_Scardinius_erythropht .............CA.T...........G............................................G...... AP011267.1_Algansea_lacustris_mi .............CT.T......T....G.T.C.....G......................................... AP011268.1_Yuriria_alta_mitochon ..............T.T...........G................................................... AP011273.1_Hybognathus_nuchalis_ ..............T.T...........G.T................................................. AP011274.1_Couesius_plumbeus_mit ..............T.T.............T...........................................G..... AP011275.1_Platygobio_gracilis_m ..............T.T....T......G................................................... AP011277.1_Erimystax_dissimilis_ ..............T.T...........G................................................... AP011279.1_Pimephales_promelas_m ..............T.T....T......G.....T.............A............................... AP011280.1_Clinostomus_elongatus ..............T.T...........G............................................G...... AP012079.1_Luxilus_chrysocephalu ..............T.T....T......G.....T............................................. AP012080.1_Macrhybopsis_gelida_m ..............................T................................................. AP012083.1_Notropis_atherinoides ..............T.T...........G................................................... AP012084.1_Notropis_baileyi_mito ..............T.T....T......G................................................... AP012087.1_Cyprinella_galactura_ ..............A.T...........G.TG................................................ AP012088.1_Hybopsis_lineapunctat ............................G.T...T............................................A AP012090.1_Luxilus_cornutus_mito ..............A.T....T......G................................................... AP012091.1_Lythrurus_ardens_mito ..............A.T...........G................................................... AP012092.1_Lythrurus_fumeus_mito ..............A.T...........G................................................... AP012093.1_Lythrurus_lirus_mitoc ..............A.T...........G................................................... AP012094.1_Lythrurus_umbratilis_ ..............A.T...........G................................................... AP012095.1_Macrhybopsis_meeki_mi ...............G............G.T.C............................................... AP012097.1_Notropis_bifrenatus_m ..............G.T....T......G................................................... AP012098.1_Pimephales_sp._MCZunc ..............T.T....T......G.....T............................................. AP012100.1_Notropis_telescopus_m ..............A.T...........G.....T............................................. AP012101.1_Pimephales_notatus_mi ..............T.T....T......G.....T............................................. AP012102.1_Pimephales_vigilax_mi ............G...............G.T................................................A AP012103.1_Pogonichthys_macrolep ..............T.T...........G.T................................................A AP012106.1_Richardsonius_balteat ..............T.T...........G................................................... AP012108.1_Notropis_chrosomus_mi ................T...........G................................................... AY216542.1_Lythrurus_umbratilus_ ..............A.T...........G................................................G.. Pimephales_vigilax_R1S2_________ ............G...............G.T................................................A Pimephales_vigilax_R1S3_________ ............G...............G.T................................................A DQ536429.1_Notropis_stramineus_m ..............A.T.............T................................................. JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m ................T....T......G.....T............................................. KT289925.1_Pimephales_promelas_m ..............T.T....T......G.....T.............A............................... KT424924.1_Rhinichthys_osculus_m ..............T.T...........G................................................... KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo ..............T.T.......C...G..................................................A MG570407.1_Notropis_chalybaeus_v ..............T.T...........G................................................... MG570408.1_Notropis_bifrenatus_v ..............G.T....T......G................................................... MG570413.1_Notropis_heterolepis_ ..............T.T...........G................................................... MG570416.1_Rhinichthys_obtusus_v ..............T.T...........G.TG..................C............................. MG570417.1_Rhinichthys_obtusus_v ..............T.T...........G.TG..................C............................. MG570420.1_Pimephales_notatus_vo ..............T.T....T......G.....T............................................. MG570443.1_Notropis_hudsonius_is ............................G.T................................................. MG570444.1_Rhinichthys_atratulus ..............A.T....T......G.T...................C............................. MG570445.1_Rhinichthys_atratulus ..............A.T....T......G.T...................C............................. MG570447.1_Luxilus_cornutus_isol ..............A.T....T......G................................................... MG570449.1_Luxilus_cornutus_isol ..............A.T....T......G................................................... MG570450.1_Pimephales_notatus_is ..............T.T....T......G.....T............................................. MG570451.1_Notropis_bifrenatus_i ..............A.T....T......G................................................... MG570453.1_Exoglossum_maxillingu ..............T.T...........G................................................... MG570454.1_Pimephales_promelas_i ..............T.T....T......G.....T.............A............................... MG570455.1_Notropis_atherinoides ..............T.T...........G................................................... MG570456.1_Notropis_atherinoides ..............T.T...........G................................................... MG570457.1_Pimephales_notatus_is ..............T.T....T......G.....T............................................. MG570458.1_Pimephales_notatus_is ..............T.T....T......G.....T............................................. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ................T............................................................... MT364325.1_Hybognathus_amarus_mi ..............T.T...........G.T...T............................................. MT501368.1_Gila_cypha_isolate_SN ..............T.T...........G..................................................A MT501369.1_Notropis_simus_pecose ..............A.T...........G................................................... MT501378.1_Hybognathus_amarus_is ..............T.T...........G.T...T............................................. MT501385.1_Notropis_jemezanus_vo ..............T.T...........G............................................G...... MT501391.1_Rhinichthys_osculus_i ..............T.T...........G............................................G...... MT667239.1_Rhinichthys_osculus_t ..............T.T...........G............................................G...... MT667242.1_Luxilus_cornutus_vouc ..............A.T....T......G................................................... MW300340.1_Hybognathus_placitus_ ..............T.T...........G................................................... MW300341.1_Hybognathus_placitus_ ..............T.T...........G................................................... NC_013763.1_Mylocheilus_caurinus ..............T.T...........G.T................................................A NC_033926.1_Opsopoeodus_emiliae_ ..............T.T....T.T......T...T............................................. NC_037008.1_Notropis_chalybaeus_ ..............T.T...........G................................................... NC_037009.1_Notropis_heterolepis ..............T.T...........G................................................... NC_037010.1_Rhinichthys_obtusus_ ..............T.T...........G.TG..................C............................. NC_037014.1_Notropis_hudsonius_i ............................G.T................................................. NC_037015.1_Exoglossum_maxilling ..............T.T...........G................................................... NC_054086.1_Ptychocheilus_lucius ................T..............................................................A NC_054257.1_Gila_cypha_isolate_S ..............T.T...........G..................................................A NC_054259.1_Gila_nigrescens_isol ..............T.T...........G..................................................A NC_054260.1_Hybognathus_amarus_i ..............T.T...........G.T...T............................................. NC_054262.1_Notropis_jemezanus_v ..............T.T...........G............................................G...... Pimephales_notatus_R2S3_________ ..............T.T....T......G.....T............................................. Pimephales_tenellus_tenellu_R2S1 ..............T.T...........G................................................... Pimephales_tenellus_parvice_R2S2 ..............T.T...........G..................................................A Pimephales_notatus_R1S1_________ ..............T.T....T......G.....T............................................. MG570452.1_Pimephales_promelas_i ..............T.T....T......G.....T.............A............................... MG570452.1_Pimephales_promelas_S ..............T.T....T......G.....T.............A............................... AB626850.1_Megalobrama_terminali CAGAGTGTCCTTTTGAACCCGGCTCTGAGGCGCGTACACACCGCCCGTCACTCTCCCCTGTCAA-AACGCAACAAAGATA AP010779.1_Mylocheilus_caurinus_ ................................................................-..T...GT....... AP011215.1_Gila_sp._1460_mitocho ...C............................................................-..T....T....... AP011263.1_Scardinius_erythropht ................................................................-..T....T....C.. AP011267.1_Algansea_lacustris_mi ...T..........................................................G.-..T.....G...C.. AP011268.1_Yuriria_alta_mitochon ...C.........................A................................G.-..T.........T.. AP011273.1_Hybognathus_nuchalis_ .............................A................................G.-..T....T.G..T.. AP011274.1_Couesius_plumbeus_mit ................................................................-..T....T.T..... AP011275.1_Platygobio_gracilis_m .............................A................................G.-..T....T....C.T AP011277.1_Erimystax_dissimilis_ .............................A..................................-..T....T..C.C.. AP011279.1_Pimephales_promelas_m ...C..........................................................G.-..T....T...AC.. AP011280.1_Clinostomus_elongatus ................................................................-..T............ AP012079.1_Luxilus_chrysocephalu ...T.........................A................................G.-..T...GT....T.. AP012080.1_Macrhybopsis_gelida_m ...C.........................A..................................-..T...TT....C.T AP012083.1_Notropis_atherinoides ...C.........................A................................G.-..T....T....T.. AP012084.1_Notropis_baileyi_mito ...T.........................A................................G.-..T....T....T.. AP012087.1_Cyprinella_galactura_ ..A...........................................................GT-..T....TG...T.. AP012088.1_Hybopsis_lineapunctat .............................A................................G.-..T....T....T.. AP012090.1_Luxilus_cornutus_mito ...C.........................A................................G.-..T...GT....T.. AP012091.1_Lythrurus_ardens_mito ...C...............T.........A..................................-..T....T....T.. AP012092.1_Lythrurus_fumeus_mito ...C.........................A................................G.-..T....T....T.. AP012093.1_Lythrurus_lirus_mitoc ...C...............T.........A..................................-..T....T....T.. AP012094.1_Lythrurus_umbratilis_ ...C...............T.........A..................................-..T....T....T.. AP012095.1_Macrhybopsis_meeki_mi ...C.........................A................................G.-..T....T....C.T AP012097.1_Notropis_bifrenatus_m ...C..........................................................G.-..T....T....C.. AP012098.1_Pimephales_sp._MCZunc ...C.........................A................................G.-..T.........C.. AP012100.1_Notropis_telescopus_m ...C.........................A................................G.-..T.......G.T.. AP012101.1_Pimephales_notatus_mi ...C.........................A................................G.-..T.........C.. AP012102.1_Pimephales_vigilax_mi ..................T...........................................GCTT.T....T...AT.. AP012103.1_Pogonichthys_macrolep ................................................................-.GT....T....... AP012106.1_Richardsonius_balteat ................................................................-..T....T....T.. AP012108.1_Notropis_chrosomus_mi ...C.........................A................................G.-..T....T....T.. AY216542.1_Lythrurus_umbratilus_ ...C...............T.........A..................................-..T..G.T....T.. Pimephales_vigilax_R1S2_________ ..................T...........................................GCTT.T....T...AT.. Pimephales_vigilax_R1S3_________ ..................T...........................................GCTT.T....T...AT.. DQ536429.1_Notropis_stramineus_m ...C...C..........TT.........A................................G.-..T....T.G..T.. JX910141.1_Squaliobarbus_curricu ................................................................-............... KC351187.1_Squaliobarbus_curricu ................................................................-............... KT278765.1_Pimephales_promelas_m ...C..........................................................G.-..T....T...AC.. KT289925.1_Pimephales_promelas_m ...C..........................................................G.-..T....T...AC.. KT424924.1_Rhinichthys_osculus_m ...C............................................................-..T...GT....C.. KU200257.1_Chanodichthys_ilishae ................................................................-............... MF972070.1_Siphateles_bicolor_mo ................................................................-..T....T....... MG570407.1_Notropis_chalybaeus_v ...C.........................A................................G.-..T....T....T.. MG570408.1_Notropis_bifrenatus_v ...C..........................................................G.-..T....T....C.. MG570413.1_Notropis_heterolepis_ ...C.........................A................................G.-..T....T....T.. MG570416.1_Rhinichthys_obtusus_v .............................A..................................-.GT....T....C.. MG570417.1_Rhinichthys_obtusus_v .............................A..................................-.GT....T....C.. MG570420.1_Pimephales_notatus_vo ...C.........................A................................G.-..T.........C.. MG570443.1_Notropis_hudsonius_is .............................A................................G.-..T....T....C.. MG570444.1_Rhinichthys_atratulus .............................A..................................-..T...GT....C.. MG570445.1_Rhinichthys_atratulus .............................A..................................-..T...GT....C.. MG570447.1_Luxilus_cornutus_isol ...C.........................A................................G.-..T...GT....T.. MG570449.1_Luxilus_cornutus_isol ...C.........................A................................G.-..T...GT....T.. MG570450.1_Pimephales_notatus_is ...C.........................A................................G.-..T.........C.. MG570451.1_Notropis_bifrenatus_i ...C..........................................................G.-..T....T....C.. MG570453.1_Exoglossum_maxillingu .............................A..................................-..T....T..C.C.. MG570454.1_Pimephales_promelas_i ...C..........................................................G.-..T....T...AC.. MG570455.1_Notropis_atherinoides ...C.........................A................................G.-..T....T....T.. MG570456.1_Notropis_atherinoides ...C.........................A................................G.-..T....T....T.. MG570457.1_Pimephales_notatus_is ...C.........................A................................G.-..T.........C.. MG570458.1_Pimephales_notatus_is ...C.........................A................................G.-..T.........C.. MK421554.1_Parabramis_pekinensis ................................................................-............... MT333789.1_Notropis_lutipinnis_v ...C..........................................................G.-..T....T....T.. MT364325.1_Hybognathus_amarus_mi .............................A.................................T-..T....T.G..T.. MT501368.1_Gila_cypha_isolate_SN ................................................................-..T....T....... MT501369.1_Notropis_simus_pecose ...C.........................A...............................TG.-..T.........T.. MT501378.1_Hybognathus_amarus_is .............................A.................................T-..T....T.G..T.. MT501385.1_Notropis_jemezanus_vo ...C.........................A................................G.-..T....T....T.. MT501391.1_Rhinichthys_osculus_i ...C............................................................-..T...GT....C.. MT667239.1_Rhinichthys_osculus_t ...C............................................................-..T...GT....C.. MT667242.1_Luxilus_cornutus_vouc ...C.........................A................................G.-..T...GT....T.. MW300340.1_Hybognathus_placitus_ ...C.........................A................................G.-..T...GT....T.. MW300341.1_Hybognathus_placitus_ ...C.........................A................................G.-..T...GT....T.. NC_013763.1_Mylocheilus_caurinus ................................................................-..T...GT....... NC_033926.1_Opsopoeodus_emiliae_ ...C...................G.....A..................................-..T...GT...AT.. NC_037008.1_Notropis_chalybaeus_ ...C.........................A................................G.-..T....T....T.. NC_037009.1_Notropis_heterolepis ...C.........................A................................G.-..T....T....T.. NC_037010.1_Rhinichthys_obtusus_ .............................A..................................-.GT....T....C.. NC_037014.1_Notropis_hudsonius_i .............................A................................G.-..T....T....C.. NC_037015.1_Exoglossum_maxilling .............................A..................................-..T....T..C.C.. NC_054086.1_Ptychocheilus_lucius T...............................................................-..T....TG...... NC_054257.1_Gila_cypha_isolate_S ................................................................-..T....T....... NC_054259.1_Gila_nigrescens_isol ...C............................................................-..T...GT....... NC_054260.1_Hybognathus_amarus_i ...................T.........A.................................T-..T....T.G..T.. NC_054262.1_Notropis_jemezanus_v ...C..........................................................G.-..T....T....T.. Pimephales_notatus_R2S3_________ ...C.........................A................................G.-..T....T....C.. Pimephales_tenellus_tenellu_R2S1 ...C.........................A..................................-.......T....C.. Pimephales_tenellus_parvice_R2S2 ...C.........................A..................................-.......T....C.. Pimephales_notatus_R1S1_________ ...C.........................A................................G.-..T....T....C.. MG570452.1_Pimephales_promelas_i ...C..........................................................G.-..T....T...AC.. MG570452.1_Pimephales_promelas_S ...C..........................................................G.-..T....T...AC.. AB626850.1_Megalobrama_terminali CTTAACACTAAAGCACTGACAAGGGGAGGCAAGTCGTAACATGGTAAGTGTACCGGAAGGTGCACTTGGATTAAA-CCCA AP010779.1_Mylocheilus_caurinus_ .C......CG.C..GG.......................................................A...-TT.. AP011215.1_Gila_sp._1460_mitocho .....T..C.....G............................................................-TT.. AP011263.1_Scardinius_erythropht .C.....AC.G...G............................................................-TT.. AP011267.1_Algansea_lacustris_mi .A............T......................................................G.A...-TT.. AP011268.1_Yuriria_alta_mitochon .C............T........................................................G...-.T.. AP011273.1_Hybognathus_nuchalis_ .C.....TC.....T........................................................A...-TT.. AP011274.1_Couesius_plumbeus_mit .C......C..C..G.......................................................A....-TT.. AP011275.1_Platygobio_gracilis_m ........C.....T........................................................A...-TT.. AP011277.1_Erimystax_dissimilis_ .C......C.G...GA...........................................................-TT.. AP011279.1_Pimephales_promelas_m .A...T..AT....T........................................................A..--TT.. AP011280.1_Clinostomus_elongatus .C......C.G...GA...........................................................-TT.. AP012079.1_Luxilus_chrysocephalu .C......C.T...T........................................................A...-TT.. AP012080.1_Macrhybopsis_gelida_m .C......C.....T........................................................A...-TT.. AP012083.1_Notropis_atherinoides .C....G.......T........................................................A...-TT.. AP012084.1_Notropis_baileyi_mito .C............T............................................................-TT.. AP012087.1_Cyprinella_galactura_ .C......C.....T........................................................A..--TT.. AP012088.1_Hybopsis_lineapunctat .C.....TC.....T........................................................A..--TT.. AP012090.1_Luxilus_cornutus_mito .C......C.....T........................................................A...-TT.. AP012091.1_Lythrurus_ardens_mito .C......C.....T........................................................G...-.T.. AP012092.1_Lythrurus_fumeus_mito A.......C.G...T.....G..................................................G...-.T.. AP012093.1_Lythrurus_lirus_mitoc .C......C.....T........................................................G...-.T.. AP012094.1_Lythrurus_umbratilis_ .C......C.....T........................................................G...-.T.. AP012095.1_Macrhybopsis_meeki_mi .C......C.....C........................................................A...-TT.. AP012097.1_Notropis_bifrenatus_m T......TC.....T........................................................A...-TT.. AP012098.1_Pimephales_sp._MCZunc .C.....A......T........................................................A..--TT.. AP012100.1_Notropis_telescopus_m .......TC.G...T........................................................A...TTT.. AP012101.1_Pimephales_notatus_mi .C.....A......T........................................................A..--TT.. AP012102.1_Pimephales_vigilax_mi .C...T.A......T........A...............................................A..--TT.. AP012103.1_Pogonichthys_macrolep .C......C......G.......................................................A...-TT.. AP012106.1_Richardsonius_balteat .C......C.G...G............................................................-TT.. AP012108.1_Notropis_chrosomus_mi .C......C.....T........................................................A...-TT.. AY216542.1_Lythrurus_umbratilus_ .C......C.....T...........................................-............G...-.T.. Pimephales_vigilax_R1S2_________ .C...T.A......T........A...............................................A..--TT.. Pimephales_vigilax_R1S3_________ .C...T.A......T........A...............................................A..--TT.. DQ536429.1_Notropis_stramineus_m ........C.G...T........................................................A...-TT.. JX910141.1_Squaliobarbus_curricu ........C..............................................................A...-.... KC351187.1_Squaliobarbus_curricu ........C..................................................................-.... KT278765.1_Pimephales_promelas_m .....T.TAT....T........................................................A..--TT.. KT289925.1_Pimephales_promelas_m .A...T..AT....T........................................................A..--TT.. KT424924.1_Rhinichthys_osculus_m .C......C.....GG...........................................................-TT.. KU200257.1_Chanodichthys_ilishae ...........................................................................-.... MF972070.1_Siphateles_bicolor_mo TC......C.....G............................................................-TT.. MG570407.1_Notropis_chalybaeus_v .......TC.....T........................................................A...-TT.. MG570408.1_Notropis_bifrenatus_v T......TC.....T........................................................A...-TT.. MG570413.1_Notropis_heterolepis_ AC......C.....T........................................................A...-TT.. MG570416.1_Rhinichthys_obtusus_v .C.....TC.T....G...........................................................-TT.. MG570417.1_Rhinichthys_obtusus_v .C.....TC.T....G...........................................................-TT.. MG570420.1_Pimephales_notatus_vo .C.....A......T........................................................A..--TT.. MG570443.1_Notropis_hudsonius_is TC......C.....T........................................................A...-TT.. MG570444.1_Rhinichthys_atratulus .C.....TC.T....GC..........................................................-TT.. MG570445.1_Rhinichthys_atratulus .C.....TC.T....GC..........................................................-TT.. MG570447.1_Luxilus_cornutus_isol .C......C.....T........................................................A...-TT.. MG570449.1_Luxilus_cornutus_isol .C......C.....T........................................................A...-TT.. MG570450.1_Pimephales_notatus_is .C.....A......T........................................................A..--TT.. MG570451.1_Notropis_bifrenatus_i T......TC.....T........................................................A...-TT.. MG570453.1_Exoglossum_maxillingu .C......C.G...GA...........................................................-TT.. MG570454.1_Pimephales_promelas_i .A...T..AT....T........................................................A..--TT.. MG570455.1_Notropis_atherinoides .C....G.......T........................................................A...-TT.. MG570456.1_Notropis_atherinoides .C....G.......T........................................................A...-TT.. MG570457.1_Pimephales_notatus_is .C.....A......T........................................................A..--TT.. MG570458.1_Pimephales_notatus_is .C.....A......T........................................................A..--TT.. MK421554.1_Parabramis_pekinensis ...........................................................................-.... MT333789.1_Notropis_lutipinnis_v .C......C.....T........................................................G...-TT.. MT364325.1_Hybognathus_amarus_mi .C.....TC.....T...............................................T........A...-TT.. MT501368.1_Gila_cypha_isolate_SN ........C.....G............................................................-TT.. MT501369.1_Notropis_simus_pecose .C.....TC.G...T.....G..................................................A...-TT.. MT501378.1_Hybognathus_amarus_is .C.....TC.....T........................................................A...-TT.. MT501385.1_Notropis_jemezanus_vo .C......C.....T........................................................A...-TT.. MT501391.1_Rhinichthys_osculus_i .C......C.....GG...........................................................-TT.. MT667239.1_Rhinichthys_osculus_t .C......C.....GG...........................................................-TT.. MT667242.1_Luxilus_cornutus_vouc .C......C.....T........................................................A...-TT.. MW300340.1_Hybognathus_placitus_ .C.....TC.....T........................................................A...-TT.. MW300341.1_Hybognathus_placitus_ .C.....TC.....T........................................................A...-TT.. NC_013763.1_Mylocheilus_caurinus .C......CG.C..GG.......................................................A...-TT.. NC_033926.1_Opsopoeodus_emiliae_ .C...T.A.G....C......................................................C.A..--TT.. NC_037008.1_Notropis_chalybaeus_ .......TC.....T........................................................A...-TT.. NC_037009.1_Notropis_heterolepis AC......C.....T........................................................A...-TT.. NC_037010.1_Rhinichthys_obtusus_ .C.....TC.T....G...........................................................-TT.. NC_037014.1_Notropis_hudsonius_i TC......C.....T........................................................A...-TT.. NC_037015.1_Exoglossum_maxilling .C......C.G...GA...........................................................-TT.. NC_054086.1_Ptychocheilus_lucius ........C..................................................................-TT.. NC_054257.1_Gila_cypha_isolate_S ........C.....G............................................................-TT.. NC_054259.1_Gila_nigrescens_isol ........C.....G............................................................-TT.. NC_054260.1_Hybognathus_amarus_i .C.....TC.....T........................................................A...-TT.. NC_054262.1_Notropis_jemezanus_v .C......C.....T........................................................A...-TT.. Pimephales_notatus_R2S3_________ .C.....AC.....T........................................................A..--TT.. Pimephales_tenellus_tenellu_R2S1 .C......AT....T........................................................A..--TT.. Pimephales_tenellus_parvice_R2S2 .C.....TAT....T........................................................A..--TT.. Pimephales_notatus_R1S1_________ .C.....AC.....T........................................................A..--TT.. MG570452.1_Pimephales_promelas_i .A...T..AT....T........................................................A..--TT.. MG570452.1_Pimephales_promelas_S .A...T..AT....T........................................................A..--TT.. AB626850.1_Megalobrama_terminali GGGCGTGGCTGAGTTAGTCAAGCATCTCACTTACACCGAGAAGACATCCATGCAAGTTGGATCACCCTGAGCCAAACAGC AP010779.1_Mylocheilus_caurinus_ .................C.....................................A...................C.... AP011215.1_Gila_sp._1460_mitocho ...T..............T...........................C........A....G..G................ AP011263.1_Scardinius_erythropht ..................T.....................................................T..C.... AP011267.1_Algansea_lacustris_mi .................C.........................................................C.... AP011268.1_Yuriria_alta_mitochon .............C...CT....................................A...................C.... AP011273.1_Hybognathus_nuchalis_ .............C....T....................................A.......G...........C.... AP011274.1_Couesius_plumbeus_mit ..................T.....C..............................A...................C.... AP011275.1_Platygobio_gracilis_m .............C....T....................................A................T..C.... AP011277.1_Erimystax_dissimilis_ ...T.............C......C..............................A.......G...........C.... AP011279.1_Pimephales_promelas_m ...TA.............T.....A..............................A......T............C.... AP011280.1_Clinostomus_elongatus .............C...C.........................................................C.... AP012079.1_Luxilus_chrysocephalu .............C....T....................................A...................C.... AP012080.1_Macrhybopsis_gelida_m ...T.........C-..CT.....C.................A............A................T..C.... AP012083.1_Notropis_atherinoides ...T.........C....T....................................A....G..G...........C.... AP012084.1_Notropis_baileyi_mito .............CC...T....................................A...................C.... AP012087.1_Cyprinella_galactura_ ...T.........C....T....................................A.......G...........C.... AP012088.1_Hybopsis_lineapunctat .............C....T....................................A...................C.... AP012090.1_Luxilus_cornutus_mito .............C....T....................................A....G..G...........C.... AP012091.1_Lythrurus_ardens_mito .............C....T....................................A....G..G...........C.... AP012092.1_Lythrurus_fumeus_mito .............C....T...........................C........A....G..G...........C.... AP012093.1_Lythrurus_lirus_mitoc .............C....T....................................A....G..G...........C.... AP012094.1_Lythrurus_umbratilis_ .............C....T....................................A....G..G...........C.... AP012095.1_Macrhybopsis_meeki_mi .............C-..CT.....C.................A............A................T..C.... AP012097.1_Notropis_bifrenatus_m ..A..........C....T....................................A.......G...........C.... AP012098.1_Pimephales_sp._MCZunc ...T..............T....................................A...................C.... AP012100.1_Notropis_telescopus_m .............C....T....................................A...................C.... AP012101.1_Pimephales_notatus_mi ...T..............T....................................A...................C.... AP012102.1_Pimephales_vigilax_mi ...T..............T......T.............................A...................T.... AP012103.1_Pogonichthys_macrolep ........................C..............................A...................C.... AP012106.1_Richardsonius_balteat ..................T.....................................................T..C.... AP012108.1_Notropis_chrosomus_mi .............C....T....................................A....G..G...........C.... AY216542.1_Lythrurus_umbratilus_ .............C....T....................................A....G..G...........C.... Pimephales_vigilax_R1S2_________ ...T..............T......T.............................A...................T.... Pimephales_vigilax_R1S3_________ ...T..............T....................................A...................T.... DQ536429.1_Notropis_stramineus_m ..................T....................................A....G..G...........C.... JX910141.1_Squaliobarbus_curricu .......................................................A........................ KC351187.1_Squaliobarbus_curricu .......................................................A........................ KT278765.1_Pimephales_promelas_m ...TA.............T.....A..............................A......T............C.... KT289925.1_Pimephales_promelas_m ...TA.............T.....A..............................A......T............C.... KT424924.1_Rhinichthys_osculus_m .................C.....................................A.......G........T..C.... KU200257.1_Chanodichthys_ilishae ..................T............................................G................ MF972070.1_Siphateles_bicolor_mo ...T..............T....................................A........................ MG570407.1_Notropis_chalybaeus_v .............C....T....................................A...................C.... MG570408.1_Notropis_bifrenatus_v ..A..........C....T....................................A.......G...........C.... MG570413.1_Notropis_heterolepis_ ...T.........C....T....................................A....G..............C.... MG570416.1_Rhinichthys_obtusus_v ........................................................................T..C.... MG570417.1_Rhinichthys_obtusus_v ........................................................................T..C.... MG570420.1_Pimephales_notatus_vo ...T..............T....................................A...................C.... MG570443.1_Notropis_hudsonius_is .......................................................A...................C.... MG570444.1_Rhinichthys_atratulus ........................................................................T..C.... MG570445.1_Rhinichthys_atratulus ........................................................................T..C.... MG570447.1_Luxilus_cornutus_isol .............C....T....................................A....G..G...........C.... MG570449.1_Luxilus_cornutus_isol .............C....T....................................A....G..G...........C.... MG570450.1_Pimephales_notatus_is ...T..............T....................................A...................C.... MG570451.1_Notropis_bifrenatus_i ..A..........C....T....................................A.......G...........C.... MG570453.1_Exoglossum_maxillingu ...T.............C......C..............................A.......G...........C.... MG570454.1_Pimephales_promelas_i ...TA.............T.....A..............................A......T............C.... MG570455.1_Notropis_atherinoides ...T.........C....T....................................A....G..G...........C.... MG570456.1_Notropis_atherinoides ...T.........C....T....................................A....G..G...........C.... MG570457.1_Pimephales_notatus_is ...T..............T....................................A...................C.... MG570458.1_Pimephales_notatus_is ...T..............T....................................A...................C.... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .............C....T....................................A...................C.... MT364325.1_Hybognathus_amarus_mi .............C....T....................................A.......G...........C.... MT501368.1_Gila_cypha_isolate_SN ...T..............T....................................A....G..G................ MT501369.1_Notropis_simus_pecose .............C....T....................................A....G..G...........C.... MT501378.1_Hybognathus_amarus_is .............C....T....................................A.......G...........C.... MT501385.1_Notropis_jemezanus_vo ...T.........C....T....................................A.......G...........C.... MT501391.1_Rhinichthys_osculus_i .................C.....................................A................T..C.... MT667239.1_Rhinichthys_osculus_t .................C.....................................A................T..C.... MT667242.1_Luxilus_cornutus_vouc .............C....T....................................A....G..G...........C.... MW300340.1_Hybognathus_placitus_ .............C....T....................................A...................C.... MW300341.1_Hybognathus_placitus_ .............C....T....................................A...................C.... NC_013763.1_Mylocheilus_caurinus .................C.....................................A...................C.... NC_033926.1_Opsopoeodus_emiliae_ ...TA............CT.......C............................A......T.........T..C.... NC_037008.1_Notropis_chalybaeus_ .............C....T....................................A...................C.... NC_037009.1_Notropis_heterolepis ...T.........C....T....................................A....G..............C.... NC_037010.1_Rhinichthys_obtusus_ ........................................................................T..C.... NC_037014.1_Notropis_hudsonius_i .......................................................A...................C.... NC_037015.1_Exoglossum_maxilling ...T.............C......C..............................A.......G...........C.... NC_054086.1_Ptychocheilus_lucius ...T..............T....................................A.......G................ NC_054257.1_Gila_cypha_isolate_S ...T..............T....................................A....G..G................ NC_054259.1_Gila_nigrescens_isol ...T..............T...........................C.............G..G................ NC_054260.1_Hybognathus_amarus_i .............C....T....................................A.......G...........C.... NC_054262.1_Notropis_jemezanus_v ...T.........C....T....................................A.......G...........C.... Pimephales_notatus_R2S3_________ ...T.............CT.....C..............................A...................C.... Pimephales_tenellus_tenellu_R2S1 ...T..........C..CT.....C..............................A...................C.... Pimephales_tenellus_parvice_R2S2 ...T.............CT.....C..............................A...................C.... Pimephales_notatus_R1S1_________ ...T.............CT.....C..............................A...................C.... MG570452.1_Pimephales_promelas_i ...TA.............T.....A..............................A......T............C.... MG570452.1_Pimephales_promelas_S ...TA.............T.....A..............................A......T............C.... AB626850.1_Megalobrama_terminali TAGCTTAACCCCCAATATAACCCAACAATGTTAATAACA-AAAC-ATGACCTAACACC-ATAAACTAAACCATTTTTTTA AP010779.1_Mylocheilus_caurinus_ ......T...A.T.......TT.G........C......-.G..-.AA........T.-.C..................G AP011215.1_Gila_sp._1460_mitocho ........TTA.TG......TT.G.....A..C......-...T-...G.........-..................... AP011263.1_Scardinius_erythropht ........TTATTT.......TT......A..T......-....-...G.....T...-..................... AP011267.1_Algansea_lacustris_mi .........TA.........AGT....C.A..T......-....-.A....A...C..-.C................... AP011268.1_Yuriria_alta_mitochon .........TA.........TTT.........T......-....-.A....C...C..-.C................... AP011273.1_Hybognathus_nuchalis_ ..........A...G.....T.T......A..T......-....-.A....C...C.T-.C.................C. AP011274.1_Couesius_plumbeus_mit ......G.TTATT........TT...G..T..C......-....-.............-..................... AP011275.1_Platygobio_gracilis_m ........T.AT..C.....TTT......A..T......-.C..-.A...T....C..-.C................... AP011277.1_Erimystax_dissimilis_ ........T.A.TT.A....TTT......A..C......-.T..-.A.........A.-.C................... AP011279.1_Pimephales_promelas_m ........TAA...G......TT......A..TT.....-....-.A........C..-.C................... AP011280.1_Clinostomus_elongatus ........TTA.T........T..........C......-.G..-.A....C....A.-.C................... AP012079.1_Luxilus_chrysocephalu ........TTA...G.....T.TG.....A..T......-....-.A....C..ACGT-.C................... AP012080.1_Macrhybopsis_gelida_m ........T.AT..T.....TTT.........T......-CC..-.A...T....C.T-.....T............... AP012083.1_Notropis_atherinoides ........T.A...G.....TT.......A..T......-....-.A........C.T-.C................... AP012084.1_Notropis_baileyi_mito ........TTAA..G.....TA.......A..C......-....-.A....CC..C..-.CG.................. AP012087.1_Cyprinella_galactura_ ........T.AT........TTG......A..C......T....-.A....C...C..-.C.............C..... AP012088.1_Hybopsis_lineapunctat .......TTTA...GA.....T...T...A.AT......-....A.A....CC..C.T-..................... AP012090.1_Luxilus_cornutus_mito ........T.AT..G.....T.TG.....A..T......-....-GAA...CG..C..-.C................... AP012091.1_Lythrurus_ardens_mito ........TTA...G......T....G..A..T......-....-.A.G..CC..C.T-.C................... AP012092.1_Lythrurus_fumeus_mito ........T.A.........TT.......A.GT......-....-.A....CC..C.T-.C................... AP012093.1_Lythrurus_lirus_mitoc ........TTA...G......T.......A..T......-....-.A.G..CC..C.T-..................... AP012094.1_Lythrurus_umbratilis_ ........TTA...G......T.......A..T......-....-.A.G..CC..C.T-.C................... AP012095.1_Macrhybopsis_meeki_mi ...T...T..ATT.C.....TTT.........T......-CC..-.A...T....C.A-..................... AP012097.1_Notropis_bifrenatus_m ........TTATT.......TT.......A..C......-.G..-.A....C...C..-.C................... AP012098.1_Pimephales_sp._MCZunc ........TAA..........T.......A..TT.....-.G..-.AA.......T..-.CT.................. AP012100.1_Notropis_telescopus_m ......T.T.A...G.....TT.......A..C......-GG..-.A........C.T-..................... AP012101.1_Pimephales_notatus_mi ........TAA..........TT......A..TT.....-.G..-.AA.......T..-.CT.................. AP012102.1_Pimephales_vigilax_mi ........TGATT......T.TT.....CA..TT.....-....-.A........C.T-.C...T............... AP012103.1_Pogonichthys_macrolep .........TA.........TTT.........C......-.G..-.A.........T.-.C................... AP012106.1_Richardsonius_balteat ........TTA.T.......TT.......A..C......-.C..-.A....C....A.-.CG..T....T.......... AP012108.1_Notropis_chrosomus_mi ........TTA..........T.......A..T......-.G..-.A.....C..C.T-..G.................. AY216542.1_Lythrurus_umbratilus_ ........TTAT..G......T.......A..T......-.G..-.G.G..CC..C.T-.C................... Pimephales_vigilax_R1S2_________ ........TGATT......T.TT.....CA..TT.....-....-.A........C.T-.C...T............... Pimephales_vigilax_R1S3_________ ........TGATT......T.TT.....CA..TT.....-....-.A........C.T-.C...T............... DQ536429.1_Notropis_stramineus_m ......T.A.A..................A.CT......-..G.-.G.G..C...C.T-.A....C.............. JX910141.1_Squaliobarbus_curricu ..........A............................-....-..A...C......-.C................... KC351187.1_Squaliobarbus_curricu ..........A............................-....-..A...C......-.C................... KT278765.1_Pimephales_promelas_m ........TAA..........TT......A..TT.....-....-.A........C..-.CG.................. KT289925.1_Pimephales_promelas_m ........TAA...G......TT......A..TT.....-....-.A........C..-GC................... KT424924.1_Rhinichthys_osculus_m .........TA.T.......TTT...TT.A..C......-G...-.A....C...C..-.C................... KU200257.1_Chanodichthys_ilishae ..........A...........T................-....-............T-.C................... MF972070.1_Siphateles_bicolor_mo ....C...TTA.T.......TT.......A..C......-....-...G.........-..................... MG570407.1_Notropis_chalybaeus_v .........TA...C......TT.........T......-....-.A.....C..C.T-..................... MG570408.1_Notropis_bifrenatus_v ........TTATT.......TT.......A..C......-.G..-.A....C...C..-.C................... MG570413.1_Notropis_heterolepis_ ........T.A...G.....TT.......A..T......-....-.A.G..C...C.T-.C................... MG570416.1_Rhinichthys_obtusus_v ......G..TA..........TA...TT.A..C......-....-.AA...C...G..-.CG.................. MG570417.1_Rhinichthys_obtusus_v ......G..TA..........TA...TT.A..C......-....-.AA...C...G..-.CG.................. MG570420.1_Pimephales_notatus_vo ........TAA..........T.......A..TT.....-.G..-.AA.......T..-.CT.................. MG570443.1_Notropis_hudsonius_is ..........A...C.....TTT..T...A..C.....G-..G.-.G...TC...CA.-GC................... MG570444.1_Rhinichthys_atratulus ......G.ATA.T.......TTA...TT.A..C......-....-.A....C...G..-.C................... MG570445.1_Rhinichthys_atratulus ......G.ATA.T.......TTA...TT.A..C......-....-.A....C...G..-.C................... MG570447.1_Luxilus_cornutus_isol ........T.AT..G.....T.TG.....A..T......-....-.A....CG..C..-.C................... MG570449.1_Luxilus_cornutus_isol ........T.AT..G.....T.TG.....A..T......-....-.A....CG..C..-.C................... MG570450.1_Pimephales_notatus_is ........TAA..........T.......A..TT.....-.G..-.AA.......T..-.CT.................. MG570451.1_Notropis_bifrenatus_i ........TTATT.......TT.......A..C......-.G..-.A....C...C..-.C................... MG570453.1_Exoglossum_maxillingu ........T.A.TT.A....TTT......A..C......-.T..-.A.........A.-.C................... MG570454.1_Pimephales_promelas_i ........TAA...G......TT......A..TT.....-....-.A........C..-GC................... MG570455.1_Notropis_atherinoides ........T.A...G.....TT.......A..T......-....-.A........C.T-.C................... MG570456.1_Notropis_atherinoides ........T.A...G.....TT.......A..T......-....-.A........C.T-.C................... MG570457.1_Pimephales_notatus_is ........TAA..........T.......A..TT.....-.G..-.AA.......T..-.CT.................. MG570458.1_Pimephales_notatus_is ........TAA..........T.......A..TT.....-.G..-.AA.......T..-.CT.................. MK421554.1_Parabramis_pekinensis .......................................-....-.............-..................... MT333789.1_Notropis_lutipinnis_v ........T.A.........TT.......A..T......-....-.A....CC..C.T-..................... MT364325.1_Hybognathus_amarus_mi ..........A...G.......T......A..T.....G-....-.AA...C...C.T-GC...T.............C. MT501368.1_Gila_cypha_isolate_SN ........TTA.TG......TT.G.....A..C......-....-...G.........-..................... MT501369.1_Notropis_simus_pecose ......C...AT..CC....TT.......A.CC.....T-....-.A....CT..C.T-..................... MT501378.1_Hybognathus_amarus_is ..........A...G.......T......A..T.....G-....-.AA...C...C.T-GC...T.............C. MT501385.1_Notropis_jemezanus_vo ........T.A...G.....TT.......A..T......-....-.A.....G..C.T-.C................... MT501391.1_Rhinichthys_osculus_i .........TA.T.......T.....TT.A..C......-G...-.A....C...G..-..................... MT667239.1_Rhinichthys_osculus_t .........TA.T...T...T.....TT.A..C......-G...-.A....C...G..-..................... MT667242.1_Luxilus_cornutus_vouc ........T.AT..G.....T.TG.....A..T......-....-.A....CG..C..-.C................... MW300340.1_Hybognathus_placitus_ ..........A..........T.......A..C.....G-G...-.A........C.T-.C.G...............CG MW300341.1_Hybognathus_placitus_ ..........A..........T.......A..C.....G-G...-.A........C.T-.C.G...............CG NC_013763.1_Mylocheilus_caurinus ......T...A.T.......TT.G........C......-.G..-.AA........T.-.C..................G NC_033926.1_Opsopoeodus_emiliae_ ........TAATT........TT......A..T......-....-.A........C.T-..................... NC_037008.1_Notropis_chalybaeus_ .........TA...C......TT.........T......-....-.A.....C..C.T-..................... NC_037009.1_Notropis_heterolepis ........T.A...G.....TT.......A..T......-....-.A.G..C...C.T-.C................... NC_037010.1_Rhinichthys_obtusus_ ......G..TA..........TA...TT.A..C......-....-.AA...C...G..-.CG.................. NC_037014.1_Notropis_hudsonius_i ..........A...C.....TTT..T...A..C.....G-..G.-.G...TC...CA.-GC................... NC_037015.1_Exoglossum_maxilling ........T.A.TT.A....TTT......A..C......-.T..-.A.........A.-.C................... NC_054086.1_Ptychocheilus_lucius ....C...TTA.TG......TT.......A..T......-...T-...G.........-..................... NC_054257.1_Gila_cypha_isolate_S ........TTA.TG......TT.G.....A..C......-....-...G.........-..................... NC_054259.1_Gila_nigrescens_isol ........TTA.TG......TT.......A..C......-...T-...G.........-..................... NC_054260.1_Hybognathus_amarus_i ..........A...G.......T......A..T.....G-.G..-.AA...C...C.T-GC...T.............C. NC_054262.1_Notropis_jemezanus_v ........T.A...G.....TT.......A..T......-....-.A.....G..C.T-.C................... Pimephales_notatus_R2S3_________ ........TAA..........TT......A..TT.....-....-.AA..T....C..-.CT............C..... Pimephales_tenellus_tenellu_R2S1 ........TAAT..G.....TTT......A..C......-.G..-.AA...C...C..T.....A............... Pimephales_tenellus_parvice_R2S2 ........TAAT........TTT......A..T......-GG..-.AA...C...C..T.....A............... Pimephales_notatus_R1S1_________ ........TAA..........TT......A..TT.....-....-.AA..T....C..-.CT............C..... MG570452.1_Pimephales_promelas_i ........TAA...G......TT......A..TT.....-....-.A........C..-GC................... MG570452.1_Pimephales_promelas_S ........TAA...G......TT......A..TT.....-....-.A........C..-.C................... AB626850.1_Megalobrama_terminali CCTGAGTATGGGCGACAGAAAAGGTTCAACCTAAAGCAATAGAAAAAGTACCGCAAGGGAAAGCTGAAAGAGAAATGAAA AP010779.1_Mylocheilus_caurinus_ ............A...........C......C...........G.................................... AP011215.1_Gila_sp._1460_mitocho ...A....C...A...G..........................G..............................G..... AP011263.1_Scardinius_erythropht ...A....C...A...G................G.........G.................................... AP011267.1_Algansea_lacustris_mi ............A...............C.-C................................................ AP011268.1_Yuriria_alta_mitochon ............A..............GC.-C................................................ AP011273.1_Hybognathus_nuchalis_ ........C...A...G...........C.-................................................. AP011274.1_Couesius_plumbeus_mit ............A..............C...CG............................................... AP011275.1_Platygobio_gracilis_m ............A...............C.-C...........G.................................... AP011277.1_Erimystax_dissimilis_ ............A.................-C...........G.............................G...... AP011279.1_Pimephales_promelas_m ............A..............GC.-..............G.................................. AP011280.1_Clinostomus_elongatus ............A................T.............G..............................G..... AP012079.1_Luxilus_chrysocephalu ............A...............C.-AC....G....................................G..... AP012080.1_Macrhybopsis_gelida_m ............A...............C................................................... AP012083.1_Notropis_atherinoides ............A...............C.-..G.........G.................................... AP012084.1_Notropis_baileyi_mito ...A........A...............C.-................................................. AP012087.1_Cyprinella_galactura_ ............A............C..C.-C..........................................G..... AP012088.1_Hybopsis_lineapunctat ...A........A...............C.-............G..C................................. AP012090.1_Luxilus_cornutus_mito ............A...............C.-.C....G.......................................... AP012091.1_Lythrurus_ardens_mito ............A...............C.-..............G............................G..... AP012092.1_Lythrurus_fumeus_mito ............A.................-..G...........C............................G..... AP012093.1_Lythrurus_lirus_mitoc ............A...............C.-..............G.................................. AP012094.1_Lythrurus_umbratilis_ ............A...............C.-...........................................G..... AP012095.1_Macrhybopsis_meeki_mi ............A...............C.T....A............................................ AP012097.1_Notropis_bifrenatus_m ............A...............C.-...........................................G..... AP012098.1_Pimephales_sp._MCZunc ............A...............C.-............G.................................... AP012100.1_Notropis_telescopus_m ............A...............C.-................................................. AP012101.1_Pimephales_notatus_mi ............A...............C.-............G..............................G..... AP012102.1_Pimephales_vigilax_mi ............A.............T.C.-............G.................................... AP012103.1_Pogonichthys_macrolep ...A........A..................C................................................ AP012106.1_Richardsonius_balteat ............A................T.CG..........G.................................... AP012108.1_Notropis_chrosomus_mi ............A.................-AG..........G.................C.................. AY216542.1_Lythrurus_umbratilus_ ............A...............C.-..............G..........-....................... Pimephales_vigilax_R1S2_________ ............A.............T.C.-............G.................................... Pimephales_vigilax_R1S3_________ ............A.............T.C.-............G.................................... DQ536429.1_Notropis_stramineus_m ............A...............T.-...........................................G..... JX910141.1_Squaliobarbus_curricu ............A................T.................................................. KC351187.1_Squaliobarbus_curricu ............A................T.................................................. KT278765.1_Pimephales_promelas_m ............A..............GC.-................................................. KT289925.1_Pimephales_promelas_m ............A..............GC.-................................................. KT424924.1_Rhinichthys_osculus_m ...A........A.................TC...........G..............................G..... KU200257.1_Chanodichthys_ilishae ............A..................C.....G.......................................... MF972070.1_Siphateles_bicolor_mo ...A....C...A...G................G.........G..............................G..... MG570407.1_Notropis_chalybaeus_v ............A...............C.-............G.................................... MG570408.1_Notropis_bifrenatus_v ............A...............C.-...........................................G..... MG570413.1_Notropis_heterolepis_ ............A...............C.-C................................................ MG570416.1_Rhinichthys_obtusus_v ...A........A..................C.....G.....G..............................G..... MG570417.1_Rhinichthys_obtusus_v ...A........A..................C.....G.....G..............................G..... MG570420.1_Pimephales_notatus_vo ............A...............C.-............G.................................... MG570443.1_Notropis_hudsonius_is ........C...A..............GC.T................................................. MG570444.1_Rhinichthys_atratulus ...A........A..................C.....G.....G..............................G..... MG570445.1_Rhinichthys_atratulus ...A........A..................C.....G.....G..............................G..... MG570447.1_Luxilus_cornutus_isol ............A...............C.-.C............................................... MG570449.1_Luxilus_cornutus_isol ............A...............C.-.C............................................... MG570450.1_Pimephales_notatus_is ............A...............C.-............G.................................... MG570451.1_Notropis_bifrenatus_i ............A...............C.-...........................................G..... MG570453.1_Exoglossum_maxillingu ............A.................-C...........G.............................G...... MG570454.1_Pimephales_promelas_i ............A..............GC.-................................................. MG570455.1_Notropis_atherinoides ............A...............C.-..G.........G.................................... MG570456.1_Notropis_atherinoides ............A...............C.-..G.........G.................................... MG570457.1_Pimephales_notatus_is ........C...A...............C.-............G.................................... MG570458.1_Pimephales_notatus_is ............A...............C.-............G.................................... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ............A.................-.G............................................... MT364325.1_Hybognathus_amarus_mi ........C...A...G.............T..............................C.................. MT501368.1_Gila_cypha_isolate_SN ...A....C...A...G..........................G..............................G..... MT501369.1_Notropis_simus_pecose ............A.................-................................................. MT501378.1_Hybognathus_amarus_is ........C...A...G.............T..............................C.................. MT501385.1_Notropis_jemezanus_vo ............A..............CC.--...........G.................................... MT501391.1_Rhinichthys_osculus_i ............A.................T............G.................................... MT667239.1_Rhinichthys_osculus_t ............A.................T............G.................................... MT667242.1_Luxilus_cornutus_vouc ............A...............C.-.C............................................... MW300340.1_Hybognathus_placitus_ ........C...A...G.......C...C.-...........................................G..... MW300341.1_Hybognathus_placitus_ ........C...A...G.......C...C.-...........................................G..... NC_013763.1_Mylocheilus_caurinus ............A...........C......C...........G.................................... NC_033926.1_Opsopoeodus_emiliae_ ............A..............GC.T......T......................CT.................. NC_037008.1_Notropis_chalybaeus_ ............A...............C.-............G.................................... NC_037009.1_Notropis_heterolepis ............A...............C.-C................................................ NC_037010.1_Rhinichthys_obtusus_ ...A........A..................C.....G.....G..............................G..... NC_037014.1_Notropis_hudsonius_i ........C...A..............GC.T................................................. NC_037015.1_Exoglossum_maxilling ............A.................-C...........G.............................G...... NC_054086.1_Ptychocheilus_lucius ...A....C...A...G................G.........G.................................... NC_054257.1_Gila_cypha_isolate_S ...A....C...A...G..........................G..............................G..... NC_054259.1_Gila_nigrescens_isol ...A....C...A...G..........................G.................................... NC_054260.1_Hybognathus_amarus_i ........C...A...G.............T..............................C.................. NC_054262.1_Notropis_jemezanus_v ............A..............CC.--...........G.................................... Pimephales_notatus_R2S3_________ ............A...............C.-................................................. Pimephales_tenellus_tenellu_R2S1 ............A...............C.-................................................. Pimephales_tenellus_parvice_R2S2 ............A...............C.-................................................. Pimephales_notatus_R1S1_________ ............A...............C.-................................................. MG570452.1_Pimephales_promelas_i ............A..............GC.-................................................. MG570452.1_Pimephales_promelas_S ............A..............GC.-..............G.................................. AB626850.1_Megalobrama_terminali CAACCCATATAAGCACTAAAAAACAAAGACTAAACCTTGTACCTTTTGCATCATGATTTAGCCAGCACCCTCAAGCAAAG AP010779.1_Mylocheilus_caurinus_ .................................................................T.............. AP011215.1_Gila_sp._1460_mitocho ...............T...G.............................................T.............. AP011263.1_Scardinius_erythropht ...............A.G...............G...............................T......G....... AP011267.1_Algansea_lacustris_mi ..............G.............................................................G... AP011268.1_Yuriria_alta_mitochon .................G...............................................T..........G... AP011273.1_Hybognathus_nuchalis_ ..............G..G...............................................T..........G... AP011274.1_Couesius_plumbeus_mit T.............G.CG.............................................................. AP011275.1_Platygobio_gracilis_m T................G.............................................................. AP011277.1_Erimystax_dissimilis_ T.G.............CG...............................................T......G....... AP011279.1_Pimephales_promelas_m .................................................................T.............. AP011280.1_Clinostomus_elongatus ................C.G...........................................T................. AP012079.1_Luxilus_chrysocephalu .................................................................T.............. AP012080.1_Macrhybopsis_gelida_m .................................................................T...A.......... AP012083.1_Notropis_atherinoides .................................................................T.............. AP012084.1_Notropis_baileyi_mito ..............G.C.G..............................................T.............. AP012087.1_Cyprinella_galactura_ .................G..C..............................................A........G... AP012088.1_Hybopsis_lineapunctat T.............G..........G.......................................T.............. AP012090.1_Luxilus_cornutus_mito .................................................................T.............. AP012091.1_Lythrurus_ardens_mito .................................................................T.............. AP012092.1_Lythrurus_fumeus_mito T................G...............................................T..........G... AP012093.1_Lythrurus_lirus_mitoc .................................G...............................T.T........G... AP012094.1_Lythrurus_umbratilis_ .................................................................T..........G... AP012095.1_Macrhybopsis_meeki_mi ...............A.................................................T...A.......... AP012097.1_Notropis_bifrenatus_m ...............T.G.............................................................. AP012098.1_Pimephales_sp._MCZunc ...T.T...........G....T..........................................T..........G... AP012100.1_Notropis_telescopus_m T.............G...G..............................................T.............. AP012101.1_Pimephales_notatus_mi .................G....T..........................................T..........G... AP012102.1_Pimephales_vigilax_mi T...............CG...............................................T.............. AP012103.1_Pogonichthys_macrolep ...............................T.................................A.............. AP012106.1_Richardsonius_balteat .................................................................T.A........G... AP012108.1_Notropis_chrosomus_mi ..............G..................................................T..........G... AY216542.1_Lythrurus_umbratilus_ .................................................................T.....T....G... Pimephales_vigilax_R1S2_________ T...............CG...............................................T.............. Pimephales_vigilax_R1S3_________ T...............CG...............................................T.............. DQ536429.1_Notropis_stramineus_m .................G...............C.............................................. JX910141.1_Squaliobarbus_curricu ............................................................................G... KC351187.1_Squaliobarbus_curricu ............................................................................G... KT278765.1_Pimephales_promelas_m .................................................................T.............. KT289925.1_Pimephales_promelas_m .................................................................T.............. KT424924.1_Rhinichthys_osculus_m .................G..............G................................T.............. KU200257.1_Chanodichthys_ilishae ................C........................................................G...... MF972070.1_Siphateles_bicolor_mo ...................G............................................................ MG570407.1_Notropis_chalybaeus_v T................G...............................................T..........G... MG570408.1_Notropis_bifrenatus_v ...............T.G.............................................................. MG570413.1_Notropis_heterolepis_ A.............G..................................................T.............. MG570416.1_Rhinichthys_obtusus_v ...................G.........T...................................T.............. MG570417.1_Rhinichthys_obtusus_v ...................G.........T...................................T.............. MG570420.1_Pimephales_notatus_vo ...T.T...........G....T..........................................T..........G... MG570443.1_Notropis_hudsonius_is ................C................................................T.............. MG570444.1_Rhinichthys_atratulus T..................G.........T.T.................................T.............. MG570445.1_Rhinichthys_atratulus T.........G........G.........T.T.................................T.............. MG570447.1_Luxilus_cornutus_isol .................................................................T.............. MG570449.1_Luxilus_cornutus_isol .................................................................T.............. MG570450.1_Pimephales_notatus_is ...T.T...........G....T..........................................T..........G... MG570451.1_Notropis_bifrenatus_i ...............T.G.............................................................. MG570453.1_Exoglossum_maxillingu T.G.............CG...............................................T......G....... MG570454.1_Pimephales_promelas_i .................................................................T.............. MG570455.1_Notropis_atherinoides .................................................................T.............. MG570456.1_Notropis_atherinoides .................................................................T.............. MG570457.1_Pimephales_notatus_is ...T.T...........G....T..........................................T..........G... MG570458.1_Pimephales_notatus_is ...T.T...........G....T..........................................T..........G... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..............G...G..............................................T..........G... MT364325.1_Hybognathus_amarus_mi ..............G..G...............................................T..........G... MT501368.1_Gila_cypha_isolate_SN ...................G............................................................ MT501369.1_Notropis_simus_pecose ..............G..G..............G................................T.T............ MT501378.1_Hybognathus_amarus_is ..............G..G...............................................T..........G... MT501385.1_Notropis_jemezanus_vo .................G...............................................T..........G... MT501391.1_Rhinichthys_osculus_i .................G..............G................................T.............. MT667239.1_Rhinichthys_osculus_t .................G..............G................................T.............. MT667242.1_Luxilus_cornutus_vouc .................................................................T.............. MW300340.1_Hybognathus_placitus_ .................................................................T.T........G... MW300341.1_Hybognathus_placitus_ .................................................................T.T........G... NC_013763.1_Mylocheilus_caurinus .................................................................T.............. NC_033926.1_Opsopoeodus_emiliae_ ......................C......................................................... NC_037008.1_Notropis_chalybaeus_ T................G...............................................T..........G... NC_037009.1_Notropis_heterolepis A.............G..................................................T.............. NC_037010.1_Rhinichthys_obtusus_ ...................G.........T...................................T.............. NC_037014.1_Notropis_hudsonius_i ................C................................................T.............. NC_037015.1_Exoglossum_maxilling T.G.............CG...............................................T......G....... NC_054086.1_Ptychocheilus_lucius ...................G............................................................ NC_054257.1_Gila_cypha_isolate_S ...................G............................................................ NC_054259.1_Gila_nigrescens_isol ...................G............................................................ NC_054260.1_Hybognathus_amarus_i ..............G..G.......................................C.......T..........G... NC_054262.1_Notropis_jemezanus_v .................G...............................................T..........G... Pimephales_notatus_R2S3_________ .................G....C..........................................T.............. Pimephales_tenellus_tenellu_R2S1 T.............G.C................................................T.T........G... Pimephales_tenellus_parvice_R2S2 T.............G.C................................................T.T........G... Pimephales_notatus_R1S1_________ .................G....C..........................................T.............. MG570452.1_Pimephales_promelas_i .................................................................T.............. MG570452.1_Pimephales_promelas_S .................................................................T.............. AB626850.1_Megalobrama_terminali AGACCTTTAGTTTGAAACCCCGAAACCAGGTGAGCTACCCCGAGACAGCCTATTTAAATTTAGGGCTAACCCGTCTCTGT AP010779.1_Mylocheilus_caurinus_ .....................................................G.T........................ AP011215.1_Gila_sp._1460_mitocho ...........................G.........................A-TT....................... AP011263.1_Scardinius_erythropht .....................................................G.T........................ AP011267.1_Algansea_lacustris_mi ...............T............A........................G-T-....................... AP011268.1_Yuriria_alta_mitochon ...T...........T.....................................A-T........................ AP011273.1_Hybognathus_nuchalis_ ...T...........T.....................................A-T........................ AP011274.1_Couesius_plumbeus_mit ................G...........A........................A.T...C.................... AP011275.1_Platygobio_gracilis_m ...T...........T.....................................G-T........................ AP011277.1_Erimystax_dissimilis_ ...............T.....................................A-T........................ AP011279.1_Pimephales_promelas_m ...T...........T.....................................A-T........................ AP011280.1_Clinostomus_elongatus ............................A........................G.T........................ AP012079.1_Luxilus_chrysocephalu ...T...........T......................................-T........................ AP012080.1_Macrhybopsis_gelida_m ...T...........T.....................................A-T........................ AP012083.1_Notropis_atherinoides ...T...........T.....................................A-T........................ AP012084.1_Notropis_baileyi_mito ...T...........T.....................................A-T........................ AP012087.1_Cyprinella_galactura_ ...T...........C....................................AA-T........................ AP012088.1_Hybopsis_lineapunctat ...T...........T.....................................A-T...A.................... AP012090.1_Luxilus_cornutus_mito ...T...........T.....................................A-T..........C............. AP012091.1_Lythrurus_ardens_mito ...T...........T.............A.......................A-T-....................... AP012092.1_Lythrurus_fumeus_mito ...T...........T.....................................A-T-....................... AP012093.1_Lythrurus_lirus_mitoc ...T...........T.....................................A-T-....................... AP012094.1_Lythrurus_umbratilis_ ...T...........T.............A.......................A-T-....................... AP012095.1_Macrhybopsis_meeki_mi ...T...........C.....................................A-T........................ AP012097.1_Notropis_bifrenatus_m ...T...........T....................................AG-T........................ AP012098.1_Pimephales_sp._MCZunc ...T...........T.....................................A-T........................ AP012100.1_Notropis_telescopus_m ...T...........T.....................................A-T........................ AP012101.1_Pimephales_notatus_mi ...T...........T.....................................A-T........................ AP012102.1_Pimephales_vigilax_mi ...T...........T.....................................A-T........................ AP012103.1_Pogonichthys_macrolep .....................................................G.T...C.................... AP012106.1_Richardsonius_balteat .....................................................G.T..........C............. AP012108.1_Notropis_chrosomus_mi ...T...........T.....................................A-T..........G............. AY216542.1_Lythrurus_umbratilus_ ...T.........A.T.....................................A-T-..........G............ Pimephales_vigilax_R1S2_________ ...T...........T.....................................A-T........................ Pimephales_vigilax_R1S3_________ ...T...........T.....................................A-T........................ DQ536429.1_Notropis_stramineus_m ...T...........T.....................................G-T........................ JX910141.1_Squaliobarbus_curricu .......................................................T........................ KC351187.1_Squaliobarbus_curricu .......................................................T........................ KT278765.1_Pimephales_promelas_m ...T...........T.....................................A-T........................ KT289925.1_Pimephales_promelas_m ...T...........T.....................................A-T........................ KT424924.1_Rhinichthys_osculus_m ...............TG....................................G-T........................ KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo .....................................................A-TT....................... MG570407.1_Notropis_chalybaeus_v ...T...........T.....................................A-T........................ MG570408.1_Notropis_bifrenatus_v ...T...........T....................................AG-T........................ MG570413.1_Notropis_heterolepis_ ...T...........T.....................................A-C........................ MG570416.1_Rhinichthys_obtusus_v ...............T.....................................G-T........................ MG570417.1_Rhinichthys_obtusus_v ...............T.....................................G-T........................ MG570420.1_Pimephales_notatus_vo ...T...........T.....................................A-T........................ MG570443.1_Notropis_hudsonius_is ...T...........T.....................................A-T..........A............. MG570444.1_Rhinichthys_atratulus ...............T.....................................G-T........................ MG570445.1_Rhinichthys_atratulus ...............T.....................................G-T........................ MG570447.1_Luxilus_cornutus_isol ...T...........T.....................................A-T........................ MG570449.1_Luxilus_cornutus_isol ...T...........T.....................................A-T........................ MG570450.1_Pimephales_notatus_is ...T...........T.....................................A-T........................ MG570451.1_Notropis_bifrenatus_i ...T...........T....................................AG-T........................ MG570453.1_Exoglossum_maxillingu ...............T.....................................A-T........................ MG570454.1_Pimephales_promelas_i ...T...........T.....................................A-T........................ MG570455.1_Notropis_atherinoides ...T...........T.....................................A-T........................ MG570456.1_Notropis_atherinoides ...T...........T.T...................................A-T........................ MG570457.1_Pimephales_notatus_is ...T...........T.....................................A-T........................ MG570458.1_Pimephales_notatus_is ...T...........T.....................................A-T........................ MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...T...........T.....................................A-T..........G............. MT364325.1_Hybognathus_amarus_mi ...............T.....................................A-T........................ MT501368.1_Gila_cypha_isolate_SN ............................A........................A-TT....................... MT501369.1_Notropis_simus_pecose ...T...........C.....................................A-T...G.................... MT501378.1_Hybognathus_amarus_is ...............T.....................................A-T........................ MT501385.1_Notropis_jemezanus_vo ...T...........TGT...................................A-T........................ MT501391.1_Rhinichthys_osculus_i ...............T.....................................G-T........................ MT667239.1_Rhinichthys_osculus_t ...............T.....................................G-T........................ MT667242.1_Luxilus_cornutus_vouc ...T...........T.....................................A-T........................ MW300340.1_Hybognathus_placitus_ ...T...........T.....................................A-T-....................... MW300341.1_Hybognathus_placitus_ ...T...........T.....................................A-T-....................... NC_013763.1_Mylocheilus_caurinus .....................................................G.T........................ NC_033926.1_Opsopoeodus_emiliae_ ...T...........C....................................AA-T..........C............. NC_037008.1_Notropis_chalybaeus_ ...T...........T.....................................A-T........................ NC_037009.1_Notropis_heterolepis ...T...........T.....................................A-C........................ NC_037010.1_Rhinichthys_obtusus_ ...............T.....................................G-T........................ NC_037014.1_Notropis_hudsonius_i ...T...........T.....................................A-T..........A............. NC_037015.1_Exoglossum_maxilling ...............T.....................................A-T........................ NC_054086.1_Ptychocheilus_lucius .....................................................A-TT....................... NC_054257.1_Gila_cypha_isolate_S ............................A........................A-TT....................... NC_054259.1_Gila_nigrescens_isol ...........................G.........................A-CT....................... NC_054260.1_Hybognathus_amarus_i ...............T.....................................A-T........................ NC_054262.1_Notropis_jemezanus_v ...T...........TGT...................................A-T........................ Pimephales_notatus_R2S3_________ ...T...........T.....................................A-T........................ Pimephales_tenellus_tenellu_R2S1 ...T...........T.....................................G-T........................ Pimephales_tenellus_parvice_R2S2 ...T...........T.............................T.......G-T........................ Pimephales_notatus_R1S1_________ ...T...........T.....................................A-T........................ MG570452.1_Pimephales_promelas_i ...T...........T.....................................A-T........................ MG570452.1_Pimephales_promelas_S ...T...........T.....................................A-T........................ AB626850.1_Megalobrama_terminali GGCAAAAGAGTGGGAAGAGCTCCGGGTAGAAGTGACAGACCTACCGAACCTGGTGATAGCTGGTTGCCTGAGAAGTGGAT AP010779.1_Mylocheilus_caurinus_ ................................................................................ AP011215.1_Gila_sp._1460_mitocho .................................................................AT............. AP011263.1_Scardinius_erythropht ................................................................................ AP011267.1_Algansea_lacustris_mi .................................................T...................A....A..A.. AP011268.1_Yuriria_alta_mitochon ..........................................................................T..A.. AP011273.1_Hybognathus_nuchalis_ .....................................................................A....A..A.. AP011274.1_Couesius_plumbeus_mit .................................................T.............................. AP011275.1_Platygobio_gracilis_m ......................................................................G...A..A.. AP011277.1_Erimystax_dissimilis_ .....................................................................A....A..... AP011279.1_Pimephales_promelas_m ..................A..................................................AG......A.. AP011280.1_Clinostomus_elongatus ......................................................................G......... AP012079.1_Luxilus_chrysocephalu .....................................................................A....A..A.. AP012080.1_Macrhybopsis_gelida_m ..........................................................................A..A.. AP012083.1_Notropis_atherinoides .....................................................................A....A..A.. AP012084.1_Notropis_baileyi_mito ..........................................................................A..A.. AP012087.1_Cyprinella_galactura_ .....................................................................A....A..A.. AP012088.1_Hybopsis_lineapunctat .....................................................................A....A..... AP012090.1_Luxilus_cornutus_mito .....................................................................A....A..A.. AP012091.1_Lythrurus_ardens_mito .....................................................................A.......... AP012092.1_Lythrurus_fumeus_mito .....................................................................A....A..A.. AP012093.1_Lythrurus_lirus_mitoc .....................................................................A.......A.. AP012094.1_Lythrurus_umbratilis_ .....................................................................A.......... AP012095.1_Macrhybopsis_meeki_mi .....................................................................A....A..A.. AP012097.1_Notropis_bifrenatus_m .....................................................................A....A..A.. AP012098.1_Pimephales_sp._MCZunc .....................................................................AG...A..A.. AP012100.1_Notropis_telescopus_m ................................C....................................A....A..A.. AP012101.1_Pimephales_notatus_mi .....................................................................AG...A..A.. AP012102.1_Pimephales_vigilax_mi .....................................................................AG...A..A.. AP012103.1_Pogonichthys_macrolep ......................................................................G......... AP012106.1_Richardsonius_balteat ................................................................................ AP012108.1_Notropis_chrosomus_mi .....................................................................A.......A.. AY216542.1_Lythrurus_umbratilus_ .....................................................................A.......... Pimephales_vigilax_R1S2_________ .....................................................................AG...A..A.. Pimephales_vigilax_R1S3_________ .....................................................................AG...A..A.. DQ536429.1_Notropis_stramineus_m .....................................................................AG...A..A.. JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m ..................A..................................................AG...A..A.. KT289925.1_Pimephales_promelas_m ..................A..................................................AG...A..A.. KT424924.1_Rhinichthys_osculus_m .........................................................................GA..... KU200257.1_Chanodichthys_ilishae .......................................................................A........ MF972070.1_Siphateles_bicolor_mo ..................................................................T............. MG570407.1_Notropis_chalybaeus_v ...................................T.............................A...A....A..A.. MG570408.1_Notropis_bifrenatus_v .....................................................................A....A..A.. MG570413.1_Notropis_heterolepis_ .....................................................................A....A..A.. MG570416.1_Rhinichthys_obtusus_v ................................................................................ MG570417.1_Rhinichthys_obtusus_v ................................................................................ MG570420.1_Pimephales_notatus_vo .....................................................................AG...A..A.. MG570443.1_Notropis_hudsonius_is ..............................G....T.T...............................AG...A..A.. MG570444.1_Rhinichthys_atratulus ......................................................................G......... MG570445.1_Rhinichthys_atratulus ......................................................................G......... MG570447.1_Luxilus_cornutus_isol .....................................................................A....A..A.. MG570449.1_Luxilus_cornutus_isol .....................................................................A....A..A.. MG570450.1_Pimephales_notatus_is .....................................................................AG...A..A.. MG570451.1_Notropis_bifrenatus_i .....................................................................A....A..A.. MG570453.1_Exoglossum_maxillingu .....................................................................A....A..... MG570454.1_Pimephales_promelas_i ..................A..................................................AG...A..A.. MG570455.1_Notropis_atherinoides .....................................................................A....A..A.. MG570456.1_Notropis_atherinoides .....................................................................A....A..A.. MG570457.1_Pimephales_notatus_is .....................................................................AG...A..A.. MG570458.1_Pimephales_notatus_is .....................................................................AG...A..A.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .....................................................................A....A..A.. MT364325.1_Hybognathus_amarus_mi ...............G..........................................................A..A.. MT501368.1_Gila_cypha_isolate_SN ..................................................................T............. MT501369.1_Notropis_simus_pecose .....................................................................A....A..A.. MT501378.1_Hybognathus_amarus_is ..........................................................................A..A.. MT501385.1_Notropis_jemezanus_vo ..........................................................................A..A.. MT501391.1_Rhinichthys_osculus_i .........................................................................GA..... MT667239.1_Rhinichthys_osculus_t .........................................................................GA..... MT667242.1_Luxilus_cornutus_vouc .....................................................................A....A..A.. MW300340.1_Hybognathus_placitus_ .....................................................................A....A..... MW300341.1_Hybognathus_placitus_ .....................................................................A....A..... NC_013763.1_Mylocheilus_caurinus ................................................................................ NC_033926.1_Opsopoeodus_emiliae_ ......................T..............................................A....A..... NC_037008.1_Notropis_chalybaeus_ ...................................T.............................A...A....A..A.. NC_037009.1_Notropis_heterolepis .....................................................................A....A..A.. NC_037010.1_Rhinichthys_obtusus_ ................................................................................ NC_037014.1_Notropis_hudsonius_i ..............................G....T.T...............................AG...A..A.. NC_037015.1_Exoglossum_maxilling .....................................................................A....A..... NC_054086.1_Ptychocheilus_lucius .................................................................AT............. NC_054257.1_Gila_cypha_isolate_S ..................................................................T............. NC_054259.1_Gila_nigrescens_isol .................................................................AT............. NC_054260.1_Hybognathus_amarus_i ...............G..........................................................A..A.. NC_054262.1_Notropis_jemezanus_v ..........................................................................A..A.. Pimephales_notatus_R2S3_________ .....................................................................AG...A..A.. Pimephales_tenellus_tenellu_R2S1 .....................................................................AG...A..... Pimephales_tenellus_parvice_R2S2 .....................................................................AG...A..... Pimephales_notatus_R1S1_________ .....................................................................AG...A..A.. MG570452.1_Pimephales_promelas_i ..................A..................................................AG...A..A.. MG570452.1_Pimephales_promelas_S ..................A..................................................AG......A.. AB626850.1_Megalobrama_terminali AGAAGTTCAGCCTCGTA-CACCCCAAATCAA--AAATATAACAT-TAAGACA-ATAAGGGAAACATACGAGAGTTAGTTA AP010779.1_Mylocheilus_caurinus_ ...............C.-.........C...G-...C...T...-C....T.-CC........A...............G AP011215.1_Gila_sp._1460_mitocho ..............A..-T.......G....C-.T.....TTG.-.....T.-T.........T...T...........G AP011263.1_Scardinius_erythropht ...............CG-T......G.C...G-.......C...-....GTG-T.T.......T.C.............. AP011267.1_Algansea_lacustris_mi ...............C.-......G......G-...C.C.TTC.-C....T.--..........G..............G AP011268.1_Yuriria_alta_mitochon ...............C.-.....TT......G-.....C.C...CC....T.--.T.T.....T...............G AP011273.1_Hybognathus_nuchalis_ ................T-.....TT.....CA-.....C.TA..-......G--.T.T...T.T...............G AP011274.1_Couesius_plumbeus_mit ...............C.-.........C...T-.......T...-.....T.-C.........T..G............G AP011275.1_Platygobio_gracilis_m ...............C.-.....TT......G-...C...C.G.-C......--.T.T.....A...............G AP011277.1_Erimystax_dissimilis_ ...............C.-.G...........G-G..C...T..C-C....T.--C.T.A....AG..............G AP011279.1_Pimephales_promelas_m ...............C.-.....TT......A-.T.....T...-.......--.T.T.....................G AP011280.1_Clinostomus_elongatus .................-.C.......C...G-.G.G...T..C-C....T.-C.........A................ AP012079.1_Luxilus_chrysocephalu ...............C.-.....TT......A-G..C.C.T..C-C......--.T.T......G..............G AP012080.1_Macrhybopsis_gelida_m ...............C.-.....TT......A-C....C.TT.C-.....T---.C.T.....A...............G AP012083.1_Notropis_atherinoides ...............C.-.G...TT......G-.....C.T...-C....T.--.T.T...T.T...............G AP012084.1_Notropis_baileyi_mito ...............C.-.....TT......G-.....C.T...-C......----CT........G............G AP012087.1_Cyprinella_galactura_ ...............C.-.....TT......A-G..C.C.T...-..G..A.-T.T.T.....AG..............G AP012088.1_Hybopsis_lineapunctat ...............C.-.....TT......G-..GC.C.-...-C....T.--.T.T.....A...............G AP012090.1_Luxilus_cornutus_mito ...............C.-.....TT......G-...C.C.T...-C......--.T.T......G..............G AP012091.1_Lythrurus_ardens_mito ...............C.-T....TTC.....G-..G....T...-C......--.-.T.....TG..............G AP012092.1_Lythrurus_fumeus_mito ...............C.-.G...TT....G.G-..G....C...-C....TG--A-.T.....TG..............G AP012093.1_Lythrurus_lirus_mitoc ...............C.-T....TTC.....G-..GC...T...-C......--A-.T.....TG..............G AP012094.1_Lythrurus_umbratilis_ ...............C.-T....TTC.....G-..G....T...-C......--.-.T.....TG..............G AP012095.1_Macrhybopsis_meeki_mi ...............C.-.....TT......A-C..C..GCT.C-.....T---.T.T.....AGC.............G AP012097.1_Notropis_bifrenatus_m ...............C.-.G...TT......A-...C.C.T.G.-.......--CT.T........G............G AP012098.1_Pimephales_sp._MCZunc ...............C.-.....TT....G.A-.G.C.C.TT..-C......--CTGT......G..............G AP012100.1_Notropis_telescopus_m ...............C.-.....TC.G....G-.G...C.T..C-.......--.C.T.....TG..............G AP012101.1_Pimephales_notatus_mi ...............C.-.....TT....G.A-.G.C...T...-C......--CTGT......G..............G AP012102.1_Pimephales_vigilax_mi .................-.....T..G...GA-.......CA.A-.......--CT.T......G..T...........G AP012103.1_Pogonichthys_macrolep ..............AC.-.G.......C...A-G..C...T...-C....T.-CC.....T..A..G............G AP012106.1_Richardsonius_balteat .................-.C.....G...GGA-.G.....T..C-C....T.-C.......G.A................ AP012108.1_Notropis_chrosomus_mi ...............C.-.....TT......G-...C...C...-C.G..T.---T.T.....TG..............G AY216542.1_Lythrurus_umbratilus_ ...............C.-.....TTC.....G-.......T...-C......--.N.T.....TG..............G Pimephales_vigilax_R1S2_________ .................-.....T..G...GA-.......CA.A-.......--CT.T......G..T...........G Pimephales_vigilax_R1S3_________ .................-.....T..G...GA-.......CA.A-.......--CT.T......G..T...........G DQ536429.1_Notropis_stramineus_m ...............C.C.C...TT....G.A-...CGC.TT..-C....TG--CT.T.....TG.G............G JX910141.1_Squaliobarbus_curricu .................-.............AT.....C.....-.......AC.........T................ KC351187.1_Squaliobarbus_curricu .................-.............AT.....C.....-.......AC.........T................ KT278765.1_Pimephales_promelas_m ...............C.-.....TT......G-.T...C.T...-C......--.T.T.....T...............G KT289925.1_Pimephales_promelas_m ...............C.-.....TT......A-.T.....T...-.......--.T.T.....................G KT424924.1_Rhinichthys_osculus_m ...............C.-.C...........G-.G.A...T...-C....T.CT.T.A..G..AG.GT...........T KU200257.1_Chanodichthys_ilishae .................-.......G.....A-...C.......-.......--C......................... MF972070.1_Siphateles_bicolor_mo ..............A.T-.G...........G-.TG....TT..-.....T.-C..T......T...T...........G MG570407.1_Notropis_chalybaeus_v ...............C.-.....T......GG-........T.C-.......--.T.A........G............G MG570408.1_Notropis_bifrenatus_v ...............C.-.G...TT......A-...C.C.T.G.-.......--CT.T........G............G MG570413.1_Notropis_heterolepis_ ...............CT-.....TT......G--..C...T.G.-.......--CTGT......G.G............G MG570416.1_Rhinichthys_obtusus_v ...............C.-.C..........GA-.G.AG..T..C-C....TG-C.T.A..G..AG..............G MG570417.1_Rhinichthys_obtusus_v ...............C.-.C..........GA-.G.AG..T..C-C....TG-C.T.A..G..AG..............G MG570420.1_Pimephales_notatus_vo ...............C.-.....TT....G.A-.G.C.C.TT..-C......--CTGT......G..............G MG570443.1_Notropis_hudsonius_is ...............C.-T....TT......A-...C...T...-C....T.--.TGT...................... MG570444.1_Rhinichthys_atratulus ...............C.-.C...........G-.G.AG..TT..-C....TG-C.T.A..G.GAG..............G MG570445.1_Rhinichthys_atratulus ...............C.-.C...........G-.G.AG..TT..-C....TG-C.T.A..G.GAG..............G MG570447.1_Luxilus_cornutus_isol ...............C.-.....TT......G-...C.C.T..C-C......--.T.T......G..............G MG570449.1_Luxilus_cornutus_isol ...............C.-.....TT......G-...C.C.T..C-C......--.T.T......G..............G MG570450.1_Pimephales_notatus_is ...............C.-.....TT....G.A-.G.C.C.TT..-C......--CTGT......G..............G MG570451.1_Notropis_bifrenatus_i ...............C.-.G...TT......A-...C.C.T.G.-.......--CT.T........G............G MG570453.1_Exoglossum_maxillingu ...............C.-.G...........G-G..C...T..C-C....T.--C.T.A....AG..............G MG570454.1_Pimephales_promelas_i ...............C.-.G...TT......A-.T.....T...-.......--.T.T.....................G MG570455.1_Notropis_atherinoides ........G......C.-.G...TT......G-...C.C.T...-C....T.--.T.T...T.T...............G MG570456.1_Notropis_atherinoides ...............C.-.G...TT......G-.....C.T...-C....T.--.T.T...T.T...............G MG570457.1_Pimephales_notatus_is ...............C.-.....TT....G.A-.G.C.C.TT..-C......--CTGT......G..............G MG570458.1_Pimephales_notatus_is ...............C.-.....TT....G.A-.G.C.C.TT..-C......--CTGT......G..............G MK421554.1_Parabramis_pekinensis .................-.............--...........-.......-........................... MT333789.1_Notropis_lutipinnis_v ...............C.-.....TT......A-...C.C.T.G.-..G..T.---T.T......G..T............ MT364325.1_Hybognathus_amarus_mi .................-.....TT......G-.....C.TG..-C.....G--.T.T...T....G............G MT501368.1_Gila_cypha_isolate_SN ..............A..-.............T-.TG....TT..-.....T.-C.G.......T...T...........G MT501369.1_Notropis_simus_pecose ...............C.-.....TT......A-C...CC.T.G.-.......----CT......G..............G MT501378.1_Hybognathus_amarus_is .................-.....TT......G-.....C.TG..-C.....G--.T.T...T....G............G MT501385.1_Notropis_jemezanus_vo ...............C.-.....TT......G-...C.C.T...-C....T.--C..T...T.T...............G MT501391.1_Rhinichthys_osculus_i ...............C.-.T...........G-...G...T..C-C....T.CT.T.A..G..AG.GT...........G MT667239.1_Rhinichthys_osculus_t ...............C.-.T...........G-...G...T..C-C....T.CT.T.A..G..AG.GT...........G MT667242.1_Luxilus_cornutus_vouc ...............C.-.....TT......G-...C.C.T..C-C......--.T.T......G..............G MW300340.1_Hybognathus_placitus_ ...............C.-.....TT......G-.......TAG.-C.....G--.-.A...T.T..G............G MW300341.1_Hybognathus_placitus_ ...............C.-.....TT......G-.......TAG.-C.....G--.-.A...T.T..G............G NC_013763.1_Mylocheilus_caurinus ...............C.-.........C...G-...C...T...-C....T.-CC........A...............G NC_033926.1_Opsopoeodus_emiliae_ .................-.C...TT......--.......TT..-.....----CT.C...G.TG............... NC_037008.1_Notropis_chalybaeus_ ...............C.-.....T......GG-........T.C-.......--.T.A........G............G NC_037009.1_Notropis_heterolepis ...............CT-.....TT......G--..C...T.G.-.......--CTGT......G.G............G NC_037010.1_Rhinichthys_obtusus_ ...............C.-.C..........GA-.G.AG..T..C-C....TG-C.T.A..G..AG..............G NC_037014.1_Notropis_hudsonius_i ...............C.-T....TT......A-...C...T...-C....T.--.TGT...................... NC_037015.1_Exoglossum_maxilling ...............C.-.G...........G-G..C...T..C-C....T.--C.T.A....AG..............G NC_054086.1_Ptychocheilus_lucius ............C.A..-.............C-.TG....TT..-.....T.-C.............T...........G NC_054257.1_Gila_cypha_isolate_S ..............A..-.............T-.TG....TT..-.......-C.G.......T...T...........G NC_054259.1_Gila_nigrescens_isol ..............A..-.............T-.T.....CT..-.....T.-T.......G.T...T...........G NC_054260.1_Hybognathus_amarus_i .................-.....TT......G-.....C.TG..-C.....G--.T.T...T....G............G NC_054262.1_Notropis_jemezanus_v ...............C.-.....TT......G-..GC.C.T...-C....T.--C..T...T.T...............G Pimephales_notatus_R2S3_________ ...............C.-.....TT......A-G..C...C...-C......--.T.T......G..............G Pimephales_tenellus_tenellu_R2S1 ...............C.-.....T..G....C-.......TT..-..G....----.T.....................G Pimephales_tenellus_parvice_R2S2 ...............C.-.....T..G....C-.......TT..-..G....----.T.....................G Pimephales_notatus_R1S1_________ ...............C.-.....TT......A-G..C...C...-C......--.T.T......G..............G MG570452.1_Pimephales_promelas_i ...............C.-.....TT......A-.T.....T...-.......--.T.T.....................G MG570452.1_Pimephales_promelas_S ...............C.-.....TT......A-.T.....T...-.......--.T.T.....................G AB626850.1_Megalobrama_terminali AAGGGGGTACAGCCCCTCTAACAAAGGATACAACC-TTCACAGGAGGATAAAGATCATAATATATAAAACATACTGTTTC AP010779.1_Mylocheilus_caurinus_ .................T.................-..........................................CT AP011215.1_Gila_sp._1460_mitocho ..A............T.T.................-..T.......A................G...............T AP011263.1_Scardinius_erythropht .................T.G...............-..T................................C......CT AP011267.1_Algansea_lacustris_mi .................T.................-..........................A.C....T........CT AP011268.1_Yuriria_alta_mitochon .................T....G............-..A....................G..A....G.T.C......CT AP011273.1_Hybognathus_nuchalis_ .................T.................-..T.......................A......T.........T AP011274.1_Couesius_plumbeus_mit .................T.................-.......................G..C.C.............CT AP011275.1_Platygobio_gracilis_m .................T.................-..T..............................T........CT AP011277.1_Erimystax_dissimilis_ .................T.................-..T................................C......CT AP011279.1_Pimephales_promelas_m .................T.................-..T.......................AG.....T........CT AP011280.1_Clinostomus_elongatus .................T.................-..T........................G..............CT AP012079.1_Luxilus_chrysocephalu .................T.................-..T.......................A......T........CT AP012080.1_Macrhybopsis_gelida_m .................T.................-..T..............................T.C......CT AP012083.1_Notropis_atherinoides .................T.................-..A......................TA......T........CT AP012084.1_Notropis_baileyi_mito .................T.................-..........................AC.....T........CT AP012087.1_Cyprinella_galactura_ .................T.................-..TG......................A....G.T........CT AP012088.1_Hybopsis_lineapunctat .................T.................-..T....................G..A......T.........T AP012090.1_Luxilus_cornutus_mito .................T.................-..T....................C..AG.....T........CT AP012091.1_Lythrurus_ardens_mito .................T.................-..........................A....G..........CT AP012092.1_Lythrurus_fumeus_mito ..A............T.T.....G...........-..T.T.....................A....G.T........CT AP012093.1_Lythrurus_lirus_mitoc .................T.................-..........................A....G..........CT AP012094.1_Lythrurus_umbratilis_ .................T.................-..........................A....G..........CT AP012095.1_Macrhybopsis_meeki_mi .................T.................-..T....................G.C................CT AP012097.1_Notropis_bifrenatus_m .................T.................-.......................G..A......T........CT AP012098.1_Pimephales_sp._MCZunc .................T.................-..T......................TA....G.T........CT AP012100.1_Notropis_telescopus_m .................T.................-..T.......................AG.....T........CT AP012101.1_Pimephales_notatus_mi .................T.................-..T......................TA....G.T........CT AP012102.1_Pimephales_vigilax_mi .................T.................-..T.......A...............AC.....T........CT AP012103.1_Pogonichthys_macrolep .................TC................-..........................................CT AP012106.1_Richardsonius_balteat .................T.................-..TG......................................CT AP012108.1_Notropis_chrosomus_mi .................T..........C......-..TG......................AG.....T........CT AY216542.1_Lythrurus_umbratilus_ .................T.................-..........................A....G..........CT Pimephales_vigilax_R1S2_________ .................T.................-..T.......A...............AC.....T........CT Pimephales_vigilax_R1S3_________ .................T.................-..T.T.....A...............AC.....T........CT DQ536429.1_Notropis_stramineus_m .................T.................-..........................GG...G.T........CT JX910141.1_Squaliobarbus_curricu ...................................-..T........................................T KC351187.1_Squaliobarbus_curricu ...................................-..T........................................T KT278765.1_Pimephales_promelas_m .................T.................-..T.......................AG.....T........CT KT289925.1_Pimephales_promelas_m .................T.................-..T.......................AG.....T........CT KT424924.1_Rhinichthys_osculus_m .................TC................-........C......................G...C......CT KU200257.1_Chanodichthys_ilishae ...................................-...........................................T MF972070.1_Siphateles_bicolor_mo ..A............T.T.................T..T....................G...................T MG570407.1_Notropis_chalybaeus_v .................T.................-..........................AC.....T........CT MG570408.1_Notropis_bifrenatus_v .................T.................-.......................G..A......T........CT MG570413.1_Notropis_heterolepis_ .................T.................-..........................A......T........CT MG570416.1_Rhinichthys_obtusus_v .................TC................-..TG......................C....G...C......CT MG570417.1_Rhinichthys_obtusus_v .................TC................-..TG......................C....G...C......CT MG570420.1_Pimephales_notatus_vo .................T.................-..T......................TA....G.T........CT MG570443.1_Notropis_hudsonius_is .................T.................-..G....................G..GG...G.T........CT MG570444.1_Rhinichthys_atratulus .................TC................-...............................G...C......CT MG570445.1_Rhinichthys_atratulus .................TC................-...G...........................G...C......CT MG570447.1_Luxilus_cornutus_isol .................T.................-..T....................C..A......T........CT MG570449.1_Luxilus_cornutus_isol .................T.................-..T....................C..A......T........CT MG570450.1_Pimephales_notatus_is .................T.................-..T......................TA....G.T........CT MG570451.1_Notropis_bifrenatus_i .................T.................-.......................G..A......T........CT MG570453.1_Exoglossum_maxillingu .................T.................-..T............................G...C......CT MG570454.1_Pimephales_promelas_i .................T....G............-..T.......................AG.....T........CT MG570455.1_Notropis_atherinoides .................T.................-..AG.....................TA....G.T........CT MG570456.1_Notropis_atherinoides .................T.................-..A......................TA......T........CT MG570457.1_Pimephales_notatus_is .................T.................-..T......................TA....G.T........CT MG570458.1_Pimephales_notatus_is .................T.................-..T......................TA....G.T........CT MK421554.1_Parabramis_pekinensis ...................................-............................................ MT333789.1_Notropis_lutipinnis_v ..A............T.T.................-..T.......................A......T........CT MT364325.1_Hybognathus_amarus_mi .................T.................-..T.......................A......T........CT MT501368.1_Gila_cypha_isolate_SN ..A............T.T..G..............-..T.......A................G...............T MT501369.1_Notropis_simus_pecose .................T.................-..........................AG.....T........CT MT501378.1_Hybognathus_amarus_is .................T.................-..T.......................A......T........CT MT501385.1_Notropis_jemezanus_vo .................T.................-..AG.....................CA......T........CT MT501391.1_Rhinichthys_osculus_i .................TC................-...G....T......................G...C......CT MT667239.1_Rhinichthys_osculus_t .................TC................-...G....T......................G...C......CT MT667242.1_Luxilus_cornutus_vouc .................T.................-..T....................C..A......T........CT MW300340.1_Hybognathus_placitus_ .................T.................-..T.......................G......T.CC.....CT MW300341.1_Hybognathus_placitus_ .................T.................-..T.......................G......T.CC.....CT NC_013763.1_Mylocheilus_caurinus .................T.................-..........................................CT NC_033926.1_Opsopoeodus_emiliae_ .................T.................-..T.......................G......T.A......AT NC_037008.1_Notropis_chalybaeus_ .................T.................-..........................AC.....T........CT NC_037009.1_Notropis_heterolepis .................T.................-..........................A......T........CT NC_037010.1_Rhinichthys_obtusus_ .................TC................-..TG......................C....G...C......CT NC_037014.1_Notropis_hudsonius_i .................T.................-..G....................G..GG...G.T........CT NC_037015.1_Exoglossum_maxilling .................T.................-..T............................G...C......CT NC_054086.1_Ptychocheilus_lucius ..A............T.T.................-..T.......A................G...............T NC_054257.1_Gila_cypha_isolate_S ..A............T.T..G..............-..T.......A................G...............T NC_054259.1_Gila_nigrescens_isol ..A............T.T.................-..TG......A................G...G...........T NC_054260.1_Hybognathus_amarus_i .................T.................-..T.......................A......T........CT NC_054262.1_Notropis_jemezanus_v .................T.................-..AG.....................CA......T........CT Pimephales_notatus_R2S3_________ .................T.................-..T......................TAG...G.T........CT Pimephales_tenellus_tenellu_R2S1 .................T.................-..T....A..................A......T..G.....C. Pimephales_tenellus_parvice_R2S2 .................T.................-..T....A..................A......T..G.....C. Pimephales_notatus_R1S1_________ .................T.................-..T......................TAG.....T........CT MG570452.1_Pimephales_promelas_i .................T.................-..T.......................AG.....T........CT MG570452.1_Pimephales_promelas_S .................T.................-..T.......................AG.....T........CT AB626850.1_Megalobrama_terminali AGTGGGCCTAAAAGCAGCCATCTAAATAGAAAGCGTTAAAGCTCAGACAGAAAGAAGTTTATTATACTGATAA-AAAATC AP010779.1_Mylocheilus_caurinus_ ............G.......C.....C.........................G..............C.....-...... AP011215.1_Gila_sp._1460_mitocho ...................................................................C.....-.C.... AP011263.1_Scardinius_erythropht ............G.......C.....C........................................C.....-...... AP011267.1_Algansea_lacustris_mi .........G..........C.....C.................G.......G...A........C.C.....-...... AP011268.1_Yuriria_alta_mitochon .........G................C.................G.......G...A........T.C.....-...... AP011273.1_Hybognathus_nuchalis_ .........G.............G..CG................G....................T.C.....-...... AP011274.1_Couesius_plumbeus_mit ....................C.....C.................C......G..............TC.....-G..... AP011275.1_Platygobio_gracilis_m .........G..........C.....C.................G.......G..............C.....-...... AP011277.1_Erimystax_dissimilis_ .........G..........C....GC.........................G...A..........C.....-...... AP011279.1_Pimephales_promelas_m .........G..................................G....................C.C.....-...... AP011280.1_Clinostomus_elongatus ....................C..............................................C.....-...... AP012079.1_Luxilus_chrysocephalu .........G................C.................G.....G.G...A........T.C.....-...... AP012080.1_Macrhybopsis_gelida_m .......T.G................C.................G......................C.....-...... AP012083.1_Notropis_atherinoides .........G................C.................G.......C............C.C.....-...... AP012084.1_Notropis_baileyi_mito .........G..G.............C.................G...........A........C.C.....-...... AP012087.1_Cyprinella_galactura_ .........G...............CC.................G.........G.A........C.C....GA...... AP012088.1_Hybopsis_lineapunctat .........G...............CC.................G.......CA...........C.C....T-T..... AP012090.1_Luxilus_cornutus_mito .........G................C.................G.......G...A........C.C.....-...... AP012091.1_Lythrurus_ardens_mito .........G.G.............GC.................G.........G..........C.C.....-...... AP012092.1_Lythrurus_fumeus_mito .........G................C.................G....................C.C.....-...... AP012093.1_Lythrurus_lirus_mitoc .........G...............GC.................G.........T..........C.C.G...G...... AP012094.1_Lythrurus_umbratilis_ .........G...............GC.................G.........G..........C.C.....-...... AP012095.1_Macrhybopsis_meeki_mi .......T.G................C.................G......................C.....-.T.... AP012097.1_Notropis_bifrenatus_m .........G................C.................G.......G...A........C.C.....-...... AP012098.1_Pimephales_sp._MCZunc .........G................C.................G.......C...A........C.C.....-...... AP012100.1_Notropis_telescopus_m .........G...............TC.................G...........A........C.C.....-...... AP012101.1_Pimephales_notatus_mi .........G................C.................G.......C...A........C.C.....-...... AP012102.1_Pimephales_vigilax_mi .........G..................................G....................C.C.....-C..... AP012103.1_Pogonichthys_macrolep ....................C....GC........................................C.....-...... AP012106.1_Richardsonius_balteat ...........G........C.....C........................................C.....-.G.G.. AP012108.1_Notropis_chrosomus_mi .........G................CG................G....................C.C.....-...... AY216542.1_Lythrurus_umbratilus_ .........G...............GC.................G.........G..........C.C.....-...... Pimephales_vigilax_R1S2_________ .........G..................................G....................C.C.....-C..... Pimephales_vigilax_R1S3_________ .........G..................................G....................C.C.....-C..... DQ536429.1_Notropis_stramineus_m .........G...............TC.................G......C....A........T.C....G-G..... JX910141.1_Squaliobarbus_curricu ............G......................................G.....................A...... KC351187.1_Squaliobarbus_curricu ............G......................................G.....................A...... KT278765.1_Pimephales_promelas_m .........G..................................G......G.............C.C.....-...... KT289925.1_Pimephales_promelas_m .........G..................................G....................C.C.....-...... KT424924.1_Rhinichthys_osculus_m .........G..........C....GC.............................A..........C.....-.G.... KU200257.1_Chanodichthys_ilishae ...................................................G.....................-...... MF972070.1_Siphateles_bicolor_mo ...................................................................C.....-...... MG570407.1_Notropis_chalybaeus_v .........G................C.................G...........A........C.C.....-...... MG570408.1_Notropis_bifrenatus_v .........G................C.................G.......G...A........C.C.....-...... MG570413.1_Notropis_heterolepis_ .........G..........C.....C.................G...........A........C.C.....-...... MG570416.1_Rhinichthys_obtusus_v .........G...............GC.........................GT..A..........C.....-.G.... MG570417.1_Rhinichthys_obtusus_v .........G...............GC.........................GT..A..........C.....-.G.... MG570420.1_Pimephales_notatus_vo .........G................C.................G.......C...A........C.C.....-...... MG570443.1_Notropis_hudsonius_is .........G..........C....GC.................G.............C......C.C.....-...G.. MG570444.1_Rhinichthys_atratulus .........G...............GC.........................G...A..........C.....A...... MG570445.1_Rhinichthys_atratulus .........G...............GC.........................G...A..........C.....-...... MG570447.1_Luxilus_cornutus_isol .........G................C.................G.......G...A........C.C.....-...... MG570449.1_Luxilus_cornutus_isol .........G................C.................G.......G...A........C.C.....-...... MG570450.1_Pimephales_notatus_is .........G................C.................G.......C...A........C.C.....-...... MG570451.1_Notropis_bifrenatus_i .........G................C.................G.......G...A........C.C.....-...... MG570453.1_Exoglossum_maxillingu .........G..........C....GC.........................G...A..........C.....-...... MG570454.1_Pimephales_promelas_i .........G..................................G....................C.C.....-...... MG570455.1_Notropis_atherinoides .........G................C.................G.......C............C.C.....-...... MG570456.1_Notropis_atherinoides .........G................C.................G.......C............C.C.....-...... MG570457.1_Pimephales_notatus_is .........G................C.................G.......C...A........C.C.....-...... MG570458.1_Pimephales_notatus_is .........G................C.................G.......C...A........C.C.....-...... MK421554.1_Parabramis_pekinensis .........................................................................-...... MT333789.1_Notropis_lutipinnis_v .........G..................................G.......G............C.C....G-...... MT364325.1_Hybognathus_amarus_mi .........G................CG................G....................T.C.....-...... MT501368.1_Gila_cypha_isolate_SN ....................C..............................................C.....-...... MT501369.1_Notropis_simus_pecose .........G................C.................G.......C...A........C.C.....-GG.... MT501378.1_Hybognathus_amarus_is .........G.............G..CG................G....................T.C.....-...... MT501385.1_Notropis_jemezanus_vo .........G................C.................G.G.....G............C.C.....-...... MT501391.1_Rhinichthys_osculus_i .........G..........C....GC.............................A..........C.....-G..... MT667239.1_Rhinichthys_osculus_t .........G..........C....GC.............................A..........C.....-G..... MT667242.1_Luxilus_cornutus_vouc .........G................C.................G.......G...A........C.C.....-...... MW300340.1_Hybognathus_placitus_ .........G................CG................G.......C............T.C.....-...... MW300341.1_Hybognathus_placitus_ .........G................CG................G.......C............T.C.....-...... NC_013763.1_Mylocheilus_caurinus ............G.......C.....C.........................G..............C.....-...... NC_033926.1_Opsopoeodus_emiliae_ .........G.........................................G..G.A........C.C.....-.T.... NC_037008.1_Notropis_chalybaeus_ .........G................C.................G...........A........C.C.....-...... NC_037009.1_Notropis_heterolepis .........G..........C.....C.................G...........A........C.C.....-...... NC_037010.1_Rhinichthys_obtusus_ .........G...............GC.........................GT..A..........C.....-.G.... NC_037014.1_Notropis_hudsonius_i .........G..........C....GC.................G.............C......C.C.....-...G.. NC_037015.1_Exoglossum_maxilling .........G..........C....GC.........................G...A..........C.....-...... NC_054086.1_Ptychocheilus_lucius ....................C.......................G......G...............C.....-...... NC_054257.1_Gila_cypha_isolate_S ....................C..............................................C.....-...... NC_054259.1_Gila_nigrescens_isol ....................C...C..........................................C.....-...... NC_054260.1_Hybognathus_amarus_i .........G................CG................G....................T.C.....-...... NC_054262.1_Notropis_jemezanus_v .........G................C.................G.......G............C.C.....-...... Pimephales_notatus_R2S3_________ .........G...............GC.................G.......C............C.C.....-...... Pimephales_tenellus_tenellu_R2S1 .........G.............G................................A........C.C.....-...... Pimephales_tenellus_parvice_R2S2 .........G..............................................A........C.C.....-...... Pimephales_notatus_R1S1_________ .........G...............GC.................G.......C............C.C.....-...... MG570452.1_Pimephales_promelas_i .........G..................................G....................C.C.....-...... MG570452.1_Pimephales_promelas_S .........G.............G....................G......G.............C.C.....-...... AB626850.1_Megalobrama_terminali TTATTCCCCTAACAATATCAGGCTAACCCATGCCCGCATGGAAGAAATTATGCTAAAATGAGTAACAAGAAGACCTGCTC AP010779.1_Mylocheilus_caurinus_ ...C........TTG........C.....................G.................................. AP011215.1_Gila_sp._1460_mitocho .....T......TT.......ATC.GT.......AA.........G.........G......................A. AP011263.1_Scardinius_erythropht ...C........TT.........C..........AA........GG.................................. AP011267.1_Algansea_lacustris_mi ...C.........TG...T....C...........C......T..G.C.......G..................TA.A.. AP011268.1_Yuriria_alta_mitochon .............TG...T....C...........A.....GT..G.C.............................A.. AP011273.1_Hybognathus_nuchalis_ ...C.........TG...T....C..........TA.....GT..G.C..........................T..A.. AP011274.1_Couesius_plumbeus_mit ............GT.......A.C...........C.........G.................................. AP011275.1_Platygobio_gracilis_m ...C........TTG........C...........A......T..G.C.............................A.. AP011277.1_Erimystax_dissimilis_ ...C........TT....T....CG.........TA.........G.............................CAA.. AP011279.1_Pimephales_promelas_m ...C.........TC..CT....C.G.........A.....GT..G.C.........................TT..A.. AP011280.1_Clinostomus_elongatus ...C........TT.........C..........TA......................................T..... AP012079.1_Luxilus_chrysocephalu ...C.........TG...T....C..........TA.....GT..G.C..........................T..A.. AP012080.1_Macrhybopsis_gelida_m ............TT....T....CG.........TA.....GT..G............................T..A.. AP012083.1_Notropis_atherinoides ...C.........TG...T....C..........TA.....GT..G.C..........................TC.A.. AP012084.1_Notropis_baileyi_mito ...C.........TG........C...........A.....GT..G.C..........................T..A.. AP012087.1_Cyprinella_galactura_ ...C........TTG...T....C..T........A......T..G.CC................T..........AA.. AP012088.1_Hybopsis_lineapunctat ...C.......G.TG...T....C...........A......T..G.C..........................T..A.. AP012090.1_Luxilus_cornutus_mito ...C.........TG...T....C..........TA.....GT..G.C..........................T..A.. AP012091.1_Lythrurus_ardens_mito ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. AP012092.1_Lythrurus_fumeus_mito ...C.........TG...T....C..........TA.....GT..G.C..........................T..A.. AP012093.1_Lythrurus_lirus_mitoc ...C.........T....T....CG................GT..G.C..........................T..A.. AP012094.1_Lythrurus_umbratilis_ ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. AP012095.1_Macrhybopsis_meeki_mi ............T.....T....C..........TA.....GT..G...............................A.. AP012097.1_Notropis_bifrenatus_m ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. AP012098.1_Pimephales_sp._MCZunc ...C........TTG..CT....C...........C.....GT..G.C.............................A.. AP012100.1_Notropis_telescopus_m ...C.........T....T....C...........A.....GT..G.C..........................TC.A.. AP012101.1_Pimephales_notatus_mi ...C........TTG..CT....C...........C.....GT..G.C.............................A.. AP012102.1_Pimephales_vigilax_mi ...C.T......TTG..CT....C..T........A....A.T..G.C.............................A.. AP012103.1_Pogonichthys_macrolep ...C........TT...C.....C...........A.........G.................................. AP012106.1_Richardsonius_balteat ...C........TT.........C...........A......................................T..... AP012108.1_Notropis_chrosomus_mi ...C.......G.TG...T....C...........A.....GT..G.C..........................T..A.. AY216542.1_Lythrurus_umbratilus_ ...C.........TG...T....CG..........A.....NT..G............................T..A.. Pimephales_vigilax_R1S2_________ ...C.T......TTG..CT....C..T........A....A.T..G.C.............................A.. Pimephales_vigilax_R1S3_________ ...C.T......TTG..CT....C..T........A......T..G.C.............................A.. DQ536429.1_Notropis_stramineus_m ...C......T..TG..CTG...C.................GT..G.C..........................T..A.. JX910141.1_Squaliobarbus_curricu ...........G.........A............TA............................................ KC351187.1_Squaliobarbus_curricu ...........G......................TA............................................ KT278765.1_Pimephales_promelas_m ...C.........TC..CT....C.G.........A.....GT..G.C.........................TT..A.. KT289925.1_Pimephales_promelas_m ...C.........TC..CT....C.G.........A.....GT..G.C.........................TT..A.. KT424924.1_Rhinichthys_osculus_m ...C........TT.........C...........A.....G...G...........................T...A.. KU200257.1_Chanodichthys_ilishae ...................................A............................................ MF972070.1_Siphateles_bicolor_mo ............TT.......ATC...........A.........G.........G................C..C..G. MG570407.1_Notropis_chalybaeus_v ...C.........TG...T....C..T.T......A......T..G.C.................T...........A.. MG570408.1_Notropis_bifrenatus_v ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. MG570413.1_Notropis_heterolepis_ ...C.......G.TG...T....C...........A.....GT..G.C..........................TC.A.. MG570416.1_Rhinichthys_obtusus_v ...C.......GTT.........CG..........C.........G.........G.....................A.. MG570417.1_Rhinichthys_obtusus_v ...C.......GTT.........CG..........C.........G.........G.....................A.. MG570420.1_Pimephales_notatus_vo ...C........TTG..CT....C...........C.....GT..G.C.............................A.. MG570443.1_Notropis_hudsonius_is ...C.......G.CG..CT....CG..........A.....GT..G.C..........................A..A.. MG570444.1_Rhinichthys_atratulus ...C........TT...C.....C.....................G...............................A.. MG570445.1_Rhinichthys_atratulus ...C........TT...C.....C.....................G...............................A.. MG570447.1_Luxilus_cornutus_isol ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. MG570449.1_Luxilus_cornutus_isol ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. MG570450.1_Pimephales_notatus_is ...C........TTG..CT....C...........C.....GT..G.C.............................A.. MG570451.1_Notropis_bifrenatus_i ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. MG570453.1_Exoglossum_maxillingu ...C........TT....T....CG.........TA.........G.............................CAA.. MG570454.1_Pimephales_promelas_i ...C.........TC..CT....C.G.........A.....GT..G.C.........................TT..A.. MG570455.1_Notropis_atherinoides ...C.........TG...T....C..........TA.....GT..G.C..........................TC.A.. MG570456.1_Notropis_atherinoides ...C.........TG...T....C..........TA.....GT..G.C..........................TC.A.. MG570457.1_Pimephales_notatus_is ...C........TTG..CT....C...........C.....GT..G.C.............................A.. MG570458.1_Pimephales_notatus_is ...C........TTG..CT....C...........C.....GT..G.C.............................A.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...C.........TG...T....C.................GT..G.C..........................T..A.. MT364325.1_Hybognathus_amarus_mi ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. MT501368.1_Gila_cypha_isolate_SN .....T......TT.......AT...........AA...................G......................G. MT501369.1_Notropis_simus_pecose ...C.........TG...T....CG.........TA.....GT..G.C.......G..................T..A.. MT501378.1_Hybognathus_amarus_is ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. MT501385.1_Notropis_jemezanus_vo ...C.........TG........C..........TA.....GT..G.C..........................TC.A.. MT501391.1_Rhinichthys_osculus_i ............TT.......A.C...........A.....G...G...............................A.. MT667239.1_Rhinichthys_osculus_t ............TT.......A.C...........A.....G...G...............................A.. MT667242.1_Luxilus_cornutus_vouc ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. MW300340.1_Hybognathus_placitus_ ...C.......G.TG...T....CG..........A.....GT..G.C..........................TC.A.. MW300341.1_Hybognathus_placitus_ ...C.......G.TG...T....CG..........A.....GT..G.C..........................TC.A.. NC_013763.1_Mylocheilus_caurinus ...C........TTG........C.....................G.................................. NC_033926.1_Opsopoeodus_emiliae_ ...C........TTT...T....C....T.....TA.....GT..G.CC............................A.. NC_037008.1_Notropis_chalybaeus_ ...C.........TG...T....C..T.T......A......T..G.C.................T...........A.. NC_037009.1_Notropis_heterolepis ...C.......G.TG...T....C...........A.....GT..G.C..........................TC.A.. NC_037010.1_Rhinichthys_obtusus_ ...C.......GTT.........CG..........C.........G.........G.....................A.. NC_037014.1_Notropis_hudsonius_i ...C.......G.CG..CT....CG..........A.....GT..G.C..........................A..A.. NC_037015.1_Exoglossum_maxilling ...C........TT....T....CG.........TA.........G.............................CAA.. NC_054086.1_Ptychocheilus_lucius .....T......TC.......AT............A...................G......................A. NC_054257.1_Gila_cypha_isolate_S .....T......TT.......AT...........AA...................G......................G. NC_054259.1_Gila_nigrescens_isol .....T......TT.......ATC..........AA.........G.........G......................G. NC_054260.1_Hybognathus_amarus_i ...C.........TG...T....C...........A.....GT..G.C..........................T..A.. NC_054262.1_Notropis_jemezanus_v ...C.........TG........C..........TA.....GT..G.C..........................TC.A.. Pimephales_notatus_R2S3_________ ...C........TTG..CT....C...........C.....GT..G.CC............................A.. Pimephales_tenellus_tenellu_R2S1 ............TTT..CT....C..TT.......A......T..G.C.........................A...A.. Pimephales_tenellus_parvice_R2S2 ............TTC..CT....C..TT.......A......T..G.C.........................A...A.. Pimephales_notatus_R1S1_________ ...C........TTG..CT....C...........C.....GT..G.CC............................A.. MG570452.1_Pimephales_promelas_i ...C.........TC..CT....C.G.........A.....GT..G.C.........................TT..A.. MG570452.1_Pimephales_promelas_S ...C.........TC..CT....C.G.........A.....GT..G.C.........................TT..A.. AB626850.1_Megalobrama_terminali TTCTCCAAGCACAAGTGTAAACCAGATCGGACAAACCACTGGAAATTAACGAACCCAACCCAAGAGAGTAATGTGAACAA AP010779.1_Mylocheilus_caurinus_ ......C.........................C...........T.......G.............G.C.G......... AP011215.1_Gila_sp._1460_mitocho ......TT..........................G.........C.....................G.C........... AP011263.1_Scardinius_erythropht ......C....................T....T.G.........C.....................G.CG.......... AP011267.1_Algansea_lacustris_mi ......CGC..........G............C...........T.......G......TA.....G.C.C......T.. AP011268.1_Yuriria_alta_mitochon ......CGC.......................C.........G.C.......G.......A.....G.C.T......T.. AP011273.1_Hybognathus_nuchalis_ ......CGC.......................CT..........T.......G.......A.....G.C.T......T.. AP011274.1_Couesius_plumbeus_mit ......C......C.............T....C..........CC.....................G...G......T.. AP011275.1_Platygobio_gracilis_m ......CGC..........G............C...........T.......G......TA.....G.C.T......T.. AP011277.1_Erimystax_dissimilis_ ......CGC.......................C...........T.......G.............G.C.G......T.. AP011279.1_Pimephales_promelas_m ......CGC................GC.....C...........T.......G.......A.....G.C.T........G AP011280.1_Clinostomus_elongatus ......C............G............C...........T.....................G.C........... AP012079.1_Luxilus_chrysocephalu ......CGC.......................T...........T.......G.......A.....G.C.T......T.. AP012080.1_Macrhybopsis_gelida_m ......CGC..........G............C...........T.......G......TA.....G.C.T......T.. AP012083.1_Notropis_atherinoides ......CGC.......................T.G..G......T.......G.......A.....G.C.T..C...T.. AP012084.1_Notropis_baileyi_mito ......CGC..T....................T..A.G......T.......G.......A.....G.C.T......TT. AP012087.1_Cyprinella_galactura_ ......CGC.......................CCG.......T.T.......G......AA.....G.C.T....G.T.. AP012088.1_Hybopsis_lineapunctat ......CGC.......................C...........T.......G.......A.....G.C.T......T.. AP012090.1_Luxilus_cornutus_mito ......CGC.......................T....G......T.......G.......A.....G.C.T......T.. AP012091.1_Lythrurus_ardens_mito ......CGC....G..................T.T.........T.......G.......A.....G.C.T......T.. AP012092.1_Lythrurus_fumeus_mito ......CGC....G..................T..........CT...............A.....G.C.T.....GT.. AP012093.1_Lythrurus_lirus_mitoc ......CGC.......................T.C.........T.......G.......A.....G.C.T......T.. AP012094.1_Lythrurus_umbratilis_ ......CGC....G..................T.C.........T.......G.......A.....G.C.T......T.. AP012095.1_Macrhybopsis_meeki_mi ......CGC..........G............C...........T.......G......TA.....G.C.T......G.. AP012097.1_Notropis_bifrenatus_m ......CGC...........G...........C...........T.......G.....TTA.....G...T......T.. AP012098.1_Pimephales_sp._MCZunc ......CGC....G..................CT..........T.......G.......A.....G.C.T......T.. AP012100.1_Notropis_telescopus_m .....TCGC..........C............CT..........T.......G.......AG....G.C.T......T.. AP012101.1_Pimephales_notatus_mi ......CGC....G..................CT..........T.......G.......A.....G.C.T......T.. AP012102.1_Pimephales_vigilax_mi ......CGC..T....................T....G......T..............TA.....G...T......TT. AP012103.1_Pogonichthys_macrolep ......C.........................C...........T.....................G.C.G......... AP012106.1_Richardsonius_balteat ......C............G............C...........T.....................G.C.G....G.T.. AP012108.1_Notropis_chrosomus_mi ......CGC..........G............T..........GT...............G.....G.C.T......T.. AY216542.1_Lythrurus_umbratilus_ ......CGC....G..................T.C.........T.......G.......A.....G.C.T......T.. Pimephales_vigilax_R1S2_________ ......CGC..T....................T....G......T..............TA.....G...T......TT. Pimephales_vigilax_R1S3_________ ......CGC..T....................T...........T..............TA.....G...T......TT. DQ536429.1_Notropis_stramineus_m ......CGC....G......G...........CC..........T.......G.......A.....G.C.T....G.T.. JX910141.1_Squaliobarbus_curricu .....................................G.......................................... KC351187.1_Squaliobarbus_curricu .....................................G.......................................... KT278765.1_Pimephales_promelas_m ......TGC.................C.....C...........T.......G.......A.....G.C.T........G KT289925.1_Pimephales_promelas_m ......CGC................GC.....C...........T.......G.......A.....G.C.T........G KT424924.1_Rhinichthys_osculus_m ......CGC..........GG.............G..G......T.....................G.C.G....G.T.G KU200257.1_Chanodichthys_ilishae ....................G................G................T....................G.... MF972070.1_Siphateles_bicolor_mo ......TT..........................G..G......C...G.................G.C.........T. MG570407.1_Notropis_chalybaeus_v ......CGC.......................T...........T.......G.....T.A.....G.C.T......... MG570408.1_Notropis_bifrenatus_v ......CGC...........G...........C...........T.......G.....TTA.....G...T......T.. MG570413.1_Notropis_heterolepis_ ......CGC.......................CCC.........T.......G.......A.....G...T......... MG570416.1_Rhinichthys_obtusus_v ......CGC.......................C....G......C..............T......G.C.T......T.G MG570417.1_Rhinichthys_obtusus_v ......CGC.......................C....G......C..............T......G.C.T......T.G MG570420.1_Pimephales_notatus_vo ......CGC....G..................CT..........T.......G.......A.....G.C.T......T.. MG570443.1_Notropis_hudsonius_is ......CGC...........G...........T...........T.......G......TA.....G.C.T.....TT.. MG570444.1_Rhinichthys_atratulus ......CGC.......................C....G......C..............T......G.C.G......... MG570445.1_Rhinichthys_atratulus ......CGC.......................C...........C..............T......G.C.G......... MG570447.1_Luxilus_cornutus_isol ......CGC.......................T....G......T.......G.......A.....G.C.T......T.. MG570449.1_Luxilus_cornutus_isol ......CGC.......................T....G......T.......G.......A.....G.C.T......T.. MG570450.1_Pimephales_notatus_is ......CGC....G..................CT..........T.......G.......A.....G.C.T......T.. MG570451.1_Notropis_bifrenatus_i ......CGC...........G...........C...........T.......G.....TTA.....G...T......T.. MG570453.1_Exoglossum_maxillingu ......CGC.......................C...........T.......G.............G.C.G......T.. MG570454.1_Pimephales_promelas_i ......CGC................GC.....C...........T.......G.......A.....G.C.T........G MG570455.1_Notropis_atherinoides ......CGC.......................T.G..G......T.......G.......A.....G.C.T..C...T.. MG570456.1_Notropis_atherinoides ......CGC.......................T.G..G......T.......G.......A.....G.C.T..C...T.. MG570457.1_Pimephales_notatus_is ......CGC....G..................CT..........T.......G.......A.....G.C.T......T.. MG570458.1_Pimephales_notatus_is ......CGC....G..................CT..........T.......G.......A.....G.C.T......T.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ......CGC.......................T....G......T...............AC....G.C.T......T.. MT364325.1_Hybognathus_amarus_mi ......CGC..........G............CT..........T.......G.......A.....G.C.T......T.. MT501368.1_Gila_cypha_isolate_SN ......TT..........................G.........C.....................G............. MT501369.1_Notropis_simus_pecose ......CGC..T........GT............G..G...A..T.......G.......A.....G.C.T....G.T.. MT501378.1_Hybognathus_amarus_is ......CGC..........G............CT..........T.......G.......A.....G.C.T......T.. MT501385.1_Notropis_jemezanus_vo ......CGC.......................T.G..G......T.......G.......A.....G.C.T..C...T.. MT501391.1_Rhinichthys_osculus_i ......CGC..........G.................G......T.....................G.C.G...AG.TGG MT667239.1_Rhinichthys_osculus_t ......CGC..........G.................G......T.....................G.C.G...AG.TGG MT667242.1_Luxilus_cornutus_vouc ......CGC.......................T....G......T.......G.......A.....G.C.T......T.. MW300340.1_Hybognathus_placitus_ ......CGC..T....................CT..........T.......G.......A.....G.C.T......T.. MW300341.1_Hybognathus_placitus_ ......CGC..T....................CT..........T.......G.......A.....G.C.T......T.. NC_013763.1_Mylocheilus_caurinus ......C.........................C...........T.......G.............G.C.G......... NC_033926.1_Opsopoeodus_emiliae_ ......C.C..T........C....CA.....C.........G.T.....A.G.......A.....G.C.T........G NC_037008.1_Notropis_chalybaeus_ ......CGC.......................T...........T.......G.....T.A.....G.C.T......... NC_037009.1_Notropis_heterolepis ......CGC.......................CCC.........T.......G.......A.....G...T......... NC_037010.1_Rhinichthys_obtusus_ ......CGC.......................C....G......C..............T......G.C.T......T.G NC_037014.1_Notropis_hudsonius_i ......CGC...........G...........T...........T.......G......TA.....G.C.T.....TT.. NC_037015.1_Exoglossum_maxilling ......CGC.......................C...........T.......G.............G.C.G......T.. NC_054086.1_Ptychocheilus_lucius ......TT..........................G.........C.....................G.........CT.. NC_054257.1_Gila_cypha_isolate_S ......TT..........................G.........C.....................G............. NC_054259.1_Gila_nigrescens_isol ......TT..........................G.........C.....................G...G.....C... NC_054260.1_Hybognathus_amarus_i ......CGC..........G............CT..........T.......G.......G.....G.C.T......T.. NC_054262.1_Notropis_jemezanus_v ......CGC.......................T.G..G......T.......G.......A.....G.C.T..C...T.. Pimephales_notatus_R2S3_________ ......CGC.......................TT..........T.......G.......A.....G.C.T......T.. Pimephales_tenellus_tenellu_R2S1 ......CGC................GC.....C...........C...............A.....G...T......T.. Pimephales_tenellus_parvice_R2S2 ......CGC...........G....GC.....C...........C...............A.....G...T......T.. Pimephales_notatus_R1S1_________ ......CGC.......................TT..........T.......G.......A.....G.C.T......T.. MG570452.1_Pimephales_promelas_i ......CGC................GC.....C...........T.......G.......A.....G.C.T........G MG570452.1_Pimephales_promelas_S ......CGC................GC.....C...........T.......G.......A.....G.C.T........G AB626850.1_Megalobrama_terminali CAG-AAAAACCAAGAAAAACCCACAACTAAAC-AATCGTTAACCCCACACTGGAGTGCTATTTT--TAAAGGAAAGACTA AP010779.1_Mylocheilus_caurinus_ T.A-...CCT......G.G.T........G.G-....................C......--..--...G.......... AP011215.1_Gila_sp._1460_mitocho ...-...T.T..G...G..TT....GT.....T...............................AT.............. AP011263.1_Scardinius_erythropht T.C-.G.CC.......G...T..........T-............G..................--...G.......... AP011267.1_Algansea_lacustris_mi T.AT.G.CCT.G....G.G.T..........T-........................GC.-...--...G.......... AP011268.1_Yuriria_alta_mitochon T.A-...CCT......G...T....G.....T-.........T..T.......G...GC.-...--...G.......... AP011273.1_Hybognathus_nuchalis_ T.A-...CCT......G...T.........TT-........................GC.-...--C..G.......... AP011274.1_Couesius_plumbeus_mit T.A-G..CCT......G.C.T....C.C...T--...................C......-...--A............. AP011275.1_Platygobio_gracilis_m T.A-.G.CCT......G...T....-.....T-G........................C.-.A.--...G.......... AP011277.1_Erimystax_dissimilis_ T.A-...CCT........C.T......C..G.--........................C.-...--...G.......... AP011279.1_Pimephales_promelas_m T.A-.G.CCT......G.G.T.....T...CT-.........T..............GC.-...--...G.......... AP011280.1_Clinostomus_elongatus ..A-G..CCT......G...T......A...T-G..........................-...--.............. AP012079.1_Luxilus_chrysocephalu T.A-...CCT......G.G.T.....T...GT-........................GC.-...--...G.......... AP012080.1_Macrhybopsis_gelida_m A.A-...CCT..........T....-.C..T.-T........................C.-...--...G.......... AP012083.1_Notropis_atherinoides T.A-.G.CCT..G...G.G...G...T...CT-G.......................GC.-...--...G.......... AP012084.1_Notropis_baileyi_mito T..-..GCCT......G...T..........T-.........T..............GC.-.A.--...G.......... AP012087.1_Cyprinella_galactura_ T.A-...CCT......G...T..........T-........................GCG-...--...G.......... AP012088.1_Hybopsis_lineapunctat T.A-...TCT......G...T......C.GCT-G.......G...............GC.--..--...G.......... AP012090.1_Luxilus_cornutus_mito T.T-...CCT......G...T.....T...GT-.......G.T..............GC.-...--.............. AP012091.1_Lythrurus_ardens_mito T.A-...CCT......G...T.........TT-.........T..............GC.-...--G............. AP012092.1_Lythrurus_fumeus_mito T.T-...CCT......G.G.T.....T...T.-.........T..............G..-...--A............. AP012093.1_Lythrurus_lirus_mitoc T.A-...CCT......G...T.........TT-G........T..............GC.-...--G............. AP012094.1_Lythrurus_umbratilis_ T.A-...CCT......G...T.........TT-G........T..............GC.-...--G............. AP012095.1_Macrhybopsis_meeki_mi T.A-...CCT..........T....-....T.-T........................C.-...--...G.......... AP012097.1_Notropis_bifrenatus_m T.A-...CCT..........T.....A...C--.........T..............GC.-...--A..G.......... AP012098.1_Pimephales_sp._MCZunc T.A-...TCT......G...T.........CT-G........T..............GC.-...--...G.......... AP012100.1_Notropis_telescopus_m T.AT...CCT..........T....G....C.-........................GC.-..A--...GA......... AP012101.1_Pimephales_notatus_mi T.A-...TCT......G...T.........CT-G........T..............GC.-...--...G.......... AP012102.1_Pimephales_vigilax_mi T.A-.G.CCT......G...T......C..TT-.........T...........A..GC.--..--...G.......... AP012103.1_Pogonichthys_macrolep T.A-.G.CCT..G...G...T....G......-.........................C.--..--...T.......... AP012106.1_Richardsonius_balteat T.A-...TCT......G...T.......G..T-G........................C.--..--.............. AP012108.1_Notropis_chrosomus_mi T.A-..TCCT......G...T.G.......TT-.........T..........G...GC.-.A.--...G.......... AY216542.1_Lythrurus_umbratilus_ T.A-...CCT......G...T.G.......TT-........................GC.-...--G............. Pimephales_vigilax_R1S2_________ T.A-.G.CCT......G...T......C..TT-.........T...........A..GC.--..--...G.......... Pimephales_vigilax_R1S3_________ T.A-.G.CCT......G...T......C..TT-.........T...........A..GC.--..--...G.......... DQ536429.1_Notropis_stramineus_m T..-...CTT..G...G...T.......G.TG-G.......................GC.-...--...G.......... JX910141.1_Squaliobarbus_curricu ..A-.......................C....-.........................C.....--.............. KC351187.1_Squaliobarbus_curricu ..A-.......................C....-.........................C.....--.............. KT278765.1_Pimephales_promelas_m T.A-.G.CCT......G.G.T.....T...CT-.........T..............GC.-...--...G.......... KT289925.1_Pimephales_promelas_m T.A-.G.CCT......G.G.T.....T...CT-.........T..............GC.-...--...G.......... KT424924.1_Rhinichthys_osculus_m T.A-...TCT......G...T....-.....T-.........................C.....--...G.......... KU200257.1_Chanodichthys_ilishae ..A-.....................G......T...............................--.............. MF972070.1_Siphateles_bicolor_mo ..A-...TCT.........TT.....T..G..--........T..................C..ATC............. MG570407.1_Notropis_chalybaeus_v T.A-....CT......G...T.........CT-........................GC.-CA.--...G.......... MG570408.1_Notropis_bifrenatus_v T.A-...CCT..........T.....A...C--.........T..............GC.-...--A..G.......... MG570413.1_Notropis_heterolepis_ T.A-.G.CCT..G...G...T.........TT-........GT..............GC.-...--...G.......... MG570416.1_Rhinichthys_obtusus_v T.A-...CC.......G...T..........T-G........................C.-...--...G.......... MG570417.1_Rhinichthys_obtusus_v T.A-...CC.......G...T..........T-G........................C.-...--...G.......... MG570420.1_Pimephales_notatus_vo T.A-...TCT......G...T.........CT-G........T..............GC.-...--...G.......... MG570443.1_Notropis_hudsonius_is T.A-...CCT......G.G.T.....T...TT-G.......................GC.-...--...G.......... MG570444.1_Rhinichthys_atratulus T.A-.G.CCT..G...G...T.........TT-.........................C.-...--...G.......... MG570445.1_Rhinichthys_atratulus T.A-.G.CCT..G...G...T.........TT-G........................C.-...--...G.......... MG570447.1_Luxilus_cornutus_isol T.T-...CCT......G...T.....T...GT-.......G.T..............GC.-...--.............. MG570449.1_Luxilus_cornutus_isol T.T-...CCT......G...T.....T...GT-.......G.T..............GC.-...--.............. MG570450.1_Pimephales_notatus_is T.A-...TCT......G...T.........CT-G........T..............GC.-...--...G.......... MG570451.1_Notropis_bifrenatus_i T.A-...CCT..........T.....A...C--.........T..............GC.-...--A..G.......... MG570453.1_Exoglossum_maxillingu T.A-...CCT........C.T......C..G.--........................C.-...--...G.......... MG570454.1_Pimephales_promelas_i T.A-.G.CCT......G.G.T.....T...CT-.........T..............GC.-...--...G.......... MG570455.1_Notropis_atherinoides T.A-.G.CCT..G...G.G...G...T...CT-G.......................GC.-...--...G.......... MG570456.1_Notropis_atherinoides T.A-.G.CCT..G...G.G...G...T...CT-G.......................GC.-...--...G.......... MG570457.1_Pimephales_notatus_is T.A-...TCT......G...T.........CT-G........T..............GC.-...--...G.......... MG570458.1_Pimephales_notatus_is T.A-...TCT......G...T.........CT-G........T..............GC.-...--...G.......... MK421554.1_Parabramis_pekinensis ...-............................-...............................--.............. MT333789.1_Notropis_lutipinnis_v T.A-...TTG......G...T.........TT-.........T..........C...GC.-.A.--...G.......... MT364325.1_Hybognathus_amarus_mi T.A-...CCT......G...T.........TT-T.......................GC.-...--C..G.......... MT501368.1_Gila_cypha_isolate_SN ..A-...T.T......G..TT....GT..G..T...........................-...TA.............. MT501369.1_Notropis_simus_pecose T.A-...CCT..G...G........G....C.-........................GC.-.A.--...G.......... MT501378.1_Hybognathus_amarus_is T.A-...CCT......G...T.........TT-T.......................GC.-...--C..G.......... MT501385.1_Notropis_jemezanus_vo T..-.G.CT...G...G.G...G...T...CT-G.......................GCG-...--...G.......... MT501391.1_Rhinichthys_osculus_i T.A-...CT..G....G...TT...-.....T-.........................C.-...--...G.......... MT667239.1_Rhinichthys_osculus_t T.A-...CT..G....G...TT...-.....T-.........................C.-...--...G.......... MT667242.1_Luxilus_cornutus_vouc T.T-...CCT......G...T.....T...GT-.......G.T..............GC.-...--.............. MW300340.1_Hybognathus_placitus_ T.A-.G.CCT..G...G.C.T.........TT-G.......................GC.-.C.--C..G.......... MW300341.1_Hybognathus_placitus_ T.A-.G.CCT..G...G.C.T.........TT-G.......G...............GC.-.C.--C..G.......... NC_013763.1_Mylocheilus_caurinus T.A-...CCT......G.G.T........G.G-....................C......--..--...G.......... NC_033926.1_Opsopoeodus_emiliae_ T.A-...CTT......G...T.........CT--..T.....T.TT........A..GA.--..--.............. NC_037008.1_Notropis_chalybaeus_ T.A-....CT......G...T.........CT-........................GC.-CA.--...G.......... NC_037009.1_Notropis_heterolepis T.A-.G.CCT..G...G...T.........TT-........GT..............GC.-...--...G.......... NC_037010.1_Rhinichthys_obtusus_ T.A-...CC.......G...T..........T-G........................C.-...--...G.......... NC_037014.1_Notropis_hudsonius_i T.A-...CCT......G.G.T.....T...TT-G.......................GC.-...--...G.......... NC_037015.1_Exoglossum_maxilling T.A-...CCT........C.T......C..G.--........................C.-...--...G.......... NC_054086.1_Ptychocheilus_lucius ..A-...T.T......G..TT.....T.....T.........T.................-...TA.............. NC_054257.1_Gila_cypha_isolate_S ..A-...T.T......G..TT....GT..G..T...........................-...TA.............. NC_054259.1_Gila_nigrescens_isol ..A-.G.T.T......G..TT.....T.....T...........................-...TA...G.......... NC_054260.1_Hybognathus_amarus_i T.A-...CCT......G...T.........TT-T.......................GC.-...--C..G.......... NC_054262.1_Notropis_jemezanus_v T..-.G.CT...G...G.G...G...T...CT-G.......................GCG-...--...G.......... Pimephales_notatus_R2S3_________ T.A-...TCT......G...T.....T...CT-........................GC.-...--...G.......... Pimephales_tenellus_tenellu_R2S1 T..-...CCT......G...T.....T...CT-.........T..............GC.....--...G.......... Pimephales_tenellus_parvice_R2S2 T..-...CCT......G.G.T.....T...CT-.........T..............GC.....--...G.......... Pimephales_notatus_R1S1_________ T.A-...TCT......G...T.....T...CT-........................GC.-...--...G.......... MG570452.1_Pimephales_promelas_i T.A-.G.CCT......G.G.T.....T...CT-.........T..............GC.-...--...G.......... MG570452.1_Pimephales_promelas_S T.A-.G.CCT......G.G.T.....T...CT-.........T..............GC.-...--...G.......... AB626850.1_Megalobrama_terminali AAAGAAAGGGAAGGAACTCGGCAAACACAAGCCTCGCCTGTTTACCAAAAACATCGCCTCCTGCAACTAAACTGAGTATA AP010779.1_Mylocheilus_caurinus_ ......G.............................................................GG.T........ AP011215.1_Gila_sp._1460_mitocho ..G.GTG..A.............................................................T........ AP011263.1_Scardinius_erythropht .....GG..............................................................T.T........ AP011267.1_Algansea_lacustris_mi ......G............................................................---GTAA...... AP011268.1_Yuriria_alta_mitochon .....G.............................................................---.TAA...... AP011273.1_Hybognathus_nuchalis_ ......G..........................................................G.---TTAA...... AP011274.1_Couesius_plumbeus_mit ....................................................................--.T.A...... AP011275.1_Platygobio_gracilis_m ......G............................................................---.T.A...... AP011277.1_Erimystax_dissimilis_ ......G..............................................................G.......... AP011279.1_Pimephales_promelas_m ......G..........................................................GT---.TAA...... AP011280.1_Clinostomus_elongatus ......G................................................................T........ AP012079.1_Luxilus_chrysocephalu ......G..........................................................G.---.AA....... AP012080.1_Macrhybopsis_gelida_m .....G...A.........................................................---.T.A...... AP012083.1_Notropis_atherinoides ......G..........................................................G.---.TAA...... AP012084.1_Notropis_baileyi_mito ......G............................................................---.TAA...... AP012087.1_Cyprinella_galactura_ ....GG..........................................................G..---.TAA...... AP012088.1_Hybopsis_lineapunctat .....GT............................................................---.TAA...... AP012090.1_Luxilus_cornutus_mito ......G..........................................................G.---.TAA...... AP012091.1_Lythrurus_ardens_mito ......G..........................................................G.---.TGT...... AP012092.1_Lythrurus_fumeus_mito ......G...........................................................T---.TCA...... AP012093.1_Lythrurus_lirus_mitoc ......G..........................................................G.---.TGA...... AP012094.1_Lythrurus_umbratilis_ ......G..........................................................G.---.TGT...... AP012095.1_Macrhybopsis_meeki_mi ......G............................................................---...A...... AP012097.1_Notropis_bifrenatus_m ......G.....................G......................................---..AA...... AP012098.1_Pimephales_sp._MCZunc ......G...........................................................T---.TAA...... AP012100.1_Notropis_telescopus_m ......G..........................................................T.---.TAA...... AP012101.1_Pimephales_notatus_mi ......G...........................................................T---.TAA...... AP012102.1_Pimephales_vigilax_mi ......G....................A......................................T---.TAA...... AP012103.1_Pogonichthys_macrolep ......G............................................................C.....A...... AP012106.1_Richardsonius_balteat .....................................................................G.......... AP012108.1_Notropis_chrosomus_mi ......G............................................................---.TA....... AY216542.1_Lythrurus_umbratilus_ ......G..........................................................G.---.TCT...... Pimephales_vigilax_R1S2_________ ......G....................A......................................T---.TAA...... Pimephales_vigilax_R1S3_________ ......G....................A......................................T---.TAA...... DQ536429.1_Notropis_stramineus_m ......G...........................................................T---.TA....... JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m ......G..........................................................GT---.TAA...... KT289925.1_Pimephales_promelas_m ......G...........................................................T---.TAA...... KT424924.1_Rhinichthys_osculus_m ..G...G..............................................................G.T........ KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo ..G..T...A.................................................T...........T........ MG570407.1_Notropis_chalybaeus_v ......G............................................................---.TAAT..... MG570408.1_Notropis_bifrenatus_v ......G.....................G......................................---..AA...... MG570413.1_Notropis_heterolepis_ ......G............................................................---..AA...... MG570416.1_Rhinichthys_obtusus_v .....................................................................G.T.A...... MG570417.1_Rhinichthys_obtusus_v .....................................................................G.T.A...... MG570420.1_Pimephales_notatus_vo ......G...........................................................T---.TAA...... MG570443.1_Notropis_hudsonius_is ......G..........................................................GT---TTAA...... MG570444.1_Rhinichthys_atratulus .....................................................................G.T........ MG570445.1_Rhinichthys_atratulus .....................................................................G.T........ MG570447.1_Luxilus_cornutus_isol ......G..........................................................G.---.TAA...... MG570449.1_Luxilus_cornutus_isol ......G..........................................................G.---.TAA...... MG570450.1_Pimephales_notatus_is ......G...........................................................T---.TAA...... MG570451.1_Notropis_bifrenatus_i ......G............................................................---..AA...... MG570453.1_Exoglossum_maxillingu ......G..............................................................G.......... MG570454.1_Pimephales_promelas_i ......G...........................................................T---.TAA...... MG570455.1_Notropis_atherinoides ......G..........................................................G.---.TAA...... MG570456.1_Notropis_atherinoides ......G..........................................................G.---.TAA...... MG570457.1_Pimephales_notatus_is ......G...........................................................T---.TAA...... MG570458.1_Pimephales_notatus_is ......G...........................................................T---.TAA...... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ......G.A..........................................................---.TAA...... MT364325.1_Hybognathus_amarus_mi ......G..........................................................G.---TTAA...... MT501368.1_Gila_cypha_isolate_SN ..G.GTG..A.............................................................T........ MT501369.1_Notropis_simus_pecose .....GG...................G......................................G.---.TAA...... MT501378.1_Hybognathus_amarus_is ......G..........................................................G.---TTAA...... MT501385.1_Notropis_jemezanus_vo .....GG..........................................................G.---.TA....... MT501391.1_Rhinichthys_osculus_i ..G...G................................................................T........ MT667239.1_Rhinichthys_osculus_t ..G...G................................................................T........ MT667242.1_Luxilus_cornutus_vouc ......G..........................................................G.---.TAA...... MW300340.1_Hybognathus_placitus_ ......G............................................................---TTAA...... MW300341.1_Hybognathus_placitus_ ......G............................................................---TTAA...... NC_013763.1_Mylocheilus_caurinus ......G.............................................................GG.T........ NC_033926.1_Opsopoeodus_emiliae_ .....GG....................T......................................T---.TAA.A.... NC_037008.1_Notropis_chalybaeus_ ......G............................................................---.TAAT..... NC_037009.1_Notropis_heterolepis ......G............................................................---..AA...... NC_037010.1_Rhinichthys_obtusus_ .....................................................................G.T.A...... NC_037014.1_Notropis_hudsonius_i ......G..........................................................GT---TTAA...... NC_037015.1_Exoglossum_maxilling ......G..............................................................G.......... NC_054086.1_Ptychocheilus_lucius ....GTG..A.............................................................T........ NC_054257.1_Gila_cypha_isolate_S ..G.GTG..A.............................................................T........ NC_054259.1_Gila_nigrescens_isol ....GTG..A...................................................................... NC_054260.1_Hybognathus_amarus_i ......G..........................................................G.---TTAA...... NC_054262.1_Notropis_jemezanus_v .....GG..........................................................G.---.TAA...... Pimephales_notatus_R2S3_________ ..................................................................T---.TAA...... Pimephales_tenellus_tenellu_R2S1 ......G............................................................---.TAA...... Pimephales_tenellus_parvice_R2S2 .....GG..........................................................G.---.TAA...... Pimephales_notatus_R1S1_________ ..................................................................T---.TAA...... MG570452.1_Pimephales_promelas_i ......G...........................................................T---.TAA...... MG570452.1_Pimephales_promelas_S ......G..........................................................GT---.TAA...... AB626850.1_Megalobrama_terminali GGAGGTCCAGCCTGCCCAGTGACTACGGGTTCAACGGCCGCGGTATTTTGACCGTGCAAAGGTAGCGCAATCACTTGTCT AP010779.1_Mylocheilus_caurinus_ ................................................................................ AP011215.1_Gila_sp._1460_mitocho ................................................................................ AP011263.1_Scardinius_erythropht ................................................................................ AP011267.1_Algansea_lacustris_mi ..............................................A................................. AP011268.1_Yuriria_alta_mitochon ..............................................A................................. AP011273.1_Hybognathus_nuchalis_ ..............................................A................................. AP011274.1_Couesius_plumbeus_mit ..............................................C................................. AP011275.1_Platygobio_gracilis_m ..............................................A................................. AP011277.1_Erimystax_dissimilis_ ................................................................................ AP011279.1_Pimephales_promelas_m ..............................................A................................. AP011280.1_Clinostomus_elongatus ................................................................................ AP012079.1_Luxilus_chrysocephalu ..............................................A................................. AP012080.1_Macrhybopsis_gelida_m .........................T.A..................A................................. AP012083.1_Notropis_atherinoides ..............................................A................................. AP012084.1_Notropis_baileyi_mito ..............................................A................................. AP012087.1_Cyprinella_galactura_ ..............................................A................................. AP012088.1_Hybopsis_lineapunctat ...............................T..............A................................. AP012090.1_Luxilus_cornutus_mito ..............................................A................................. AP012091.1_Lythrurus_ardens_mito ..............................................A................................. AP012092.1_Lythrurus_fumeus_mito ...............................T..............A................................. AP012093.1_Lythrurus_lirus_mitoc ..............................................A................................. AP012094.1_Lythrurus_umbratilis_ ..............................................A................................. AP012095.1_Macrhybopsis_meeki_mi .........................TAA..................A................................. AP012097.1_Notropis_bifrenatus_m ..............................................A................................. AP012098.1_Pimephales_sp._MCZunc ..............................................A................................. AP012100.1_Notropis_telescopus_m ..............................................A................................. AP012101.1_Pimephales_notatus_mi ..............................................A................................. AP012102.1_Pimephales_vigilax_mi ...............................A..............A................................. AP012103.1_Pogonichthys_macrolep ................................................................................ AP012106.1_Richardsonius_balteat ................................................................................ AP012108.1_Notropis_chrosomus_mi ..............................................A................................. AY216542.1_Lythrurus_umbratilus_ ..............................................A................................. Pimephales_vigilax_R1S2_________ ...............................A..............A................................. Pimephales_vigilax_R1S3_________ ...............................A..............A................................. DQ536429.1_Notropis_stramineus_m ..............................................A................................. JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m ..............................................A................................. KT289925.1_Pimephales_promelas_m ..............................................A................................. KT424924.1_Rhinichthys_osculus_m ................................................................................ KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo .A.............................................................................. MG570407.1_Notropis_chalybaeus_v ..............................................A................................. MG570408.1_Notropis_bifrenatus_v ..............................................A................................. MG570413.1_Notropis_heterolepis_ ..............................................A................................. MG570416.1_Rhinichthys_obtusus_v ................................................................................ MG570417.1_Rhinichthys_obtusus_v ................................................................................ MG570420.1_Pimephales_notatus_vo ..............................................A................................. MG570443.1_Notropis_hudsonius_is ..............................................A................................. MG570444.1_Rhinichthys_atratulus ................................................................................ MG570445.1_Rhinichthys_atratulus ................................................................................ MG570447.1_Luxilus_cornutus_isol ..............................................A................................. MG570449.1_Luxilus_cornutus_isol ..............................................A................................. MG570450.1_Pimephales_notatus_is ..............................................A................................. MG570451.1_Notropis_bifrenatus_i ..............................................A................................. MG570453.1_Exoglossum_maxillingu ................................................................................ MG570454.1_Pimephales_promelas_i ..............................................A................................. MG570455.1_Notropis_atherinoides ..............................................A................................. MG570456.1_Notropis_atherinoides ..............................................A................................. MG570457.1_Pimephales_notatus_is ..............................................A................................. MG570458.1_Pimephales_notatus_is ..............................................A................................. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..............................................A................................. MT364325.1_Hybognathus_amarus_mi ..............................................A................................. MT501368.1_Gila_cypha_isolate_SN ................................................................................ MT501369.1_Notropis_simus_pecose ...............................T..............A................................. MT501378.1_Hybognathus_amarus_is ..............................................A................................. MT501385.1_Notropis_jemezanus_vo ..............................................A................................. MT501391.1_Rhinichthys_osculus_i ................................................................................ MT667239.1_Rhinichthys_osculus_t ................................................................................ MT667242.1_Luxilus_cornutus_vouc ..............................................A................................. MW300340.1_Hybognathus_placitus_ ..............................................A................................. MW300341.1_Hybognathus_placitus_ ..............................................A................................. NC_013763.1_Mylocheilus_caurinus ................................................................................ NC_033926.1_Opsopoeodus_emiliae_ ...............................A..............A................................. NC_037008.1_Notropis_chalybaeus_ ..............................................A................................. NC_037009.1_Notropis_heterolepis ..............................................A................................. NC_037010.1_Rhinichthys_obtusus_ ................................................................................ NC_037014.1_Notropis_hudsonius_i ..............................................A................................. NC_037015.1_Exoglossum_maxilling ................................................................................ NC_054086.1_Ptychocheilus_lucius ................................................................................ NC_054257.1_Gila_cypha_isolate_S ................................................................................ NC_054259.1_Gila_nigrescens_isol ................................................................................ NC_054260.1_Hybognathus_amarus_i ..............................................A................................. NC_054262.1_Notropis_jemezanus_v ..............................................A................................. Pimephales_notatus_R2S3_________ ..............................................A................................. Pimephales_tenellus_tenellu_R2S1 ................................................................................ Pimephales_tenellus_parvice_R2S2 ................................................................................ Pimephales_notatus_R1S1_________ ..............................................A................................. MG570452.1_Pimephales_promelas_i ..............................................A................................. MG570452.1_Pimephales_promelas_S ..............................................A................................. AB626850.1_Megalobrama_terminali TTTAAATAGAGACCTGTATGAATGGCTAAACGAGGGCTTAACTGTCTCCCCCTTCAAGTCAGTGAAATTGATCTATCCGT AP010779.1_Mylocheilus_caurinus_ C...........................G.......................C..C........................ AP011215.1_Gila_sp._1460_mitocho C...........................G.......................AC.......................... AP011263.1_Scardinius_erythropht C...........................G.......................C..C........................ AP011267.1_Algansea_lacustris_mi ............................G.......................C..C........................ AP011268.1_Yuriria_alta_mitochon ............................G.......................C..C........................ AP011273.1_Hybognathus_nuchalis_ ............................G.......................C..C........................ AP011274.1_Couesius_plumbeus_mit C...........................G..........................C........................ AP011275.1_Platygobio_gracilis_m ............................G.......................C..C........................ AP011277.1_Erimystax_dissimilis_ C...........................G..........................C........................ AP011279.1_Pimephales_promelas_m C...........................G..........................C........................ AP011280.1_Clinostomus_elongatus C...........................G..........................CG....................... AP012079.1_Luxilus_chrysocephalu ............................G..........................C....G................... AP012080.1_Macrhybopsis_gelida_m ............................G......................TC..CT....................... AP012083.1_Notropis_atherinoides ............................G.......................C..C........................ AP012084.1_Notropis_baileyi_mito ............................G.......................C..C........................ AP012087.1_Cyprinella_galactura_ ........A...................G.......................CC.C........................ AP012088.1_Hybopsis_lineapunctat ............................G.......................C..C........................ AP012090.1_Luxilus_cornutus_mito ............................G.......................C..C........................ AP012091.1_Lythrurus_ardens_mito ............................G..........................C........................ AP012092.1_Lythrurus_fumeus_mito ............................G.......................C..C........................ AP012093.1_Lythrurus_lirus_mitoc ............................G..........................C........................ AP012094.1_Lythrurus_umbratilis_ ............................G..........................C........................ AP012095.1_Macrhybopsis_meeki_mi ............................G..........................CT....................... AP012097.1_Notropis_bifrenatus_m ............................G..........................C........................ AP012098.1_Pimephales_sp._MCZunc ............................G..........................C........................ AP012100.1_Notropis_telescopus_m ............................G.......................C..C........................ AP012101.1_Pimephales_notatus_mi ............................G..........................C........................ AP012102.1_Pimephales_vigilax_mi .......G....................G..........................C........................ AP012103.1_Pogonichthys_macrolep C...........................G..........................C........................ AP012106.1_Richardsonius_balteat C...........................G..........................C........................ AP012108.1_Notropis_chrosomus_mi ............................G.......................C..C........................ AY216542.1_Lythrurus_umbratilus_ ............................G.........................TC........................ Pimephales_vigilax_R1S2_________ .......G....................G..........................C........................ Pimephales_vigilax_R1S3_________ .......G....................G..........................C........................ DQ536429.1_Notropis_stramineus_m ............................G.......................C..C........................ JX910141.1_Squaliobarbus_curricu ..........................C..................................................... KC351187.1_Squaliobarbus_curricu ..........................C..................................................... KT278765.1_Pimephales_promelas_m C...........................G..........................C........................ KT289925.1_Pimephales_promelas_m C...........................G..........................C........................ KT424924.1_Rhinichthys_osculus_m C...........................G.........................TC...................C.... KU200257.1_Chanodichthys_ilishae ........................................................................T..C.... MF972070.1_Siphateles_bicolor_mo C...........................G......................TA........................... MG570407.1_Notropis_chalybaeus_v ............................G..........................C........................ MG570408.1_Notropis_bifrenatus_v ............................G..........................C........................ MG570413.1_Notropis_heterolepis_ ............................G.......................C..C........................ MG570416.1_Rhinichthys_obtusus_v C...........................G..........................C........................ MG570417.1_Rhinichthys_obtusus_v C...........................G..........................C........................ MG570420.1_Pimephales_notatus_vo ............................G..........................C........................ MG570443.1_Notropis_hudsonius_is ............................G..........................C........................ MG570444.1_Rhinichthys_atratulus C...........................G..........................C........................ MG570445.1_Rhinichthys_atratulus C...........................G..........................C........................ MG570447.1_Luxilus_cornutus_isol ............................G.......................C..C........................ MG570449.1_Luxilus_cornutus_isol ............................G.......................C..C........................ MG570450.1_Pimephales_notatus_is ............................G..........................C........................ MG570451.1_Notropis_bifrenatus_i ............................G..........................C........................ MG570453.1_Exoglossum_maxillingu C...........................G..........................C........................ MG570454.1_Pimephales_promelas_i C...........................G..........................C........................ MG570455.1_Notropis_atherinoides ............................G.......................C..C........................ MG570456.1_Notropis_atherinoides ............................G.......................C..C........................ MG570457.1_Pimephales_notatus_is ............................G..........................C........................ MG570458.1_Pimephales_notatus_is ............................G..........................C........................ MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ............................G...........G........T..C..C........................ MT364325.1_Hybognathus_amarus_mi ............................G.......................C..CG....................... MT501368.1_Gila_cypha_isolate_SN C...........................G.......................AC.......................... MT501369.1_Notropis_simus_pecose ............................G.......................C..C........................ MT501378.1_Hybognathus_amarus_is ............................G.......................C..CG....................... MT501385.1_Notropis_jemezanus_vo ............................G..........................C........................ MT501391.1_Rhinichthys_osculus_i C...........................G.........................TC........................ MT667239.1_Rhinichthys_osculus_t C...........................G.........................TC........................ MT667242.1_Luxilus_cornutus_vouc ............................G.......................C..C........................ MW300340.1_Hybognathus_placitus_ ............................G..........................C........................ MW300341.1_Hybognathus_placitus_ ............................G..........................C........................ NC_013763.1_Mylocheilus_caurinus C...........................G.......................C..C........................ NC_033926.1_Opsopoeodus_emiliae_ ............................G..........G............C..C........................ NC_037008.1_Notropis_chalybaeus_ ............................G..........................C........................ NC_037009.1_Notropis_heterolepis ............................G.......................C..C........................ NC_037010.1_Rhinichthys_obtusus_ C...........................G..........................C........................ NC_037014.1_Notropis_hudsonius_i ............................G..........................C........................ NC_037015.1_Exoglossum_maxilling C...........................G..........................C........................ NC_054086.1_Ptychocheilus_lucius C...........................G.......................AC.......................... NC_054257.1_Gila_cypha_isolate_S C...........................G.......................AC.......................... NC_054259.1_Gila_nigrescens_isol C...........................G.......................AC.......................... NC_054260.1_Hybognathus_amarus_i ............................G.......................C..CG....................... NC_054262.1_Notropis_jemezanus_v ............................G..........................CG....................... Pimephales_notatus_R2S3_________ ............................G..........................C........................ Pimephales_tenellus_tenellu_R2S1 ............................G.......................C..C........................ Pimephales_tenellus_parvice_R2S2 ............................G.......................C..C........................ Pimephales_notatus_R1S1_________ ............................G..........................C........................ MG570452.1_Pimephales_promelas_i C...........................G..........................C........................ MG570452.1_Pimephales_promelas_S C...........................G..........................C........................ AB626850.1_Megalobrama_terminali GCAGAAGCGGGTATAATTATACAAGACGAGAAGACCCTTTGGAGCTTAAGGTACAAAAT-TCAACCACGTTAAGCAACTT AP010779.1_Mylocheilus_caurinus_ ................CCG........................................-.............A.....C AP011215.1_Gila_sp._1460_mitocho ..............G.C........................................T--.T.T.........A.....C AP011263.1_Scardinius_erythropht ...........................................................-.T...........A.G...C AP011267.1_Algansea_lacustris_mi ...........................................................-...G...T.....A.....C AP011268.1_Yuriria_alta_mitochon .................AC........................................-...G......A..A.....C AP011273.1_Hybognathus_nuchalis_ ................CAC........................................-...G...T...........C AP011274.1_Couesius_plumbeus_mit ................A.C.......................................C-.............A.....C AP011275.1_Platygobio_gracilis_m ................CAG.....................................G.C-...G.........A.....C AP011277.1_Erimystax_dissimilis_ .................AC........................................-.T.G.........A.....C AP011279.1_Pimephales_promelas_m ..................C........................................-...C...T.....A.....C AP011280.1_Clinostomus_elongatus ............G...CC.......................................G.-.............A.G.... AP012079.1_Luxilus_chrysocephalu .................AC........................................-...G...............C AP012080.1_Macrhybopsis_gelida_m .................AC...............A......................G.C.T..T........A.....C AP012083.1_Notropis_atherinoides ...............G.AC....................................G...-...G...............C AP012084.1_Notropis_baileyi_mito ..................T........................................-...GT........A.....C AP012087.1_Cyprinella_galactura_ ...............CAAC.....................................G..-...GT............... AP012088.1_Hybopsis_lineapunctat ................CAC........................................-C..G.........A...... AP012090.1_Luxilus_cornutus_mito .................AC.....................................G..-...G...............C AP012091.1_Lythrurus_ardens_mito ...............T.AC........................................-...G.........A...... AP012092.1_Lythrurus_fumeus_mito .................AC........................................-..........C..A.....C AP012093.1_Lythrurus_lirus_mitoc .................AC........................................-...G.........A...... AP012094.1_Lythrurus_umbratilis_ ...............T.AC........................................-...G.........A...... AP012095.1_Macrhybopsis_meeki_mi .................AC........................................T.T...........A.....C AP012097.1_Notropis_bifrenatus_m ...............TAAC.....................................G..-...G...............C AP012098.1_Pimephales_sp._MCZunc .................AC........................................-...G...T...........C AP012100.1_Notropis_telescopus_m .................AC.......................................C-...G...T...........C AP012101.1_Pimephales_notatus_mi .................AC......................................G.-...G...T...........C AP012102.1_Pimephales_vigilax_mi .................CC........................................-.......TA..........C AP012103.1_Pogonichthys_macrolep ................C........................................G.-.............A.....C AP012106.1_Richardsonius_balteat .........................................................G.-.............A.G...C AP012108.1_Notropis_chrosomus_mi ..................C........................................-...G.........A.....C AY216542.1_Lythrurus_umbratilus_ .................AC......................................G.-...G.........A...... Pimephales_vigilax_R1S2_________ .................CC........................................-.......TA..........C Pimephales_vigilax_R1S3_________ .................CC........................................-.......TA..........C DQ536429.1_Notropis_stramineus_m .................AC.....................................G..-...G......C........C JX910141.1_Squaliobarbus_curricu ................CC.........................................-..........C......... KC351187.1_Squaliobarbus_curricu ................CC.........................................-..........C......... KT278765.1_Pimephales_promelas_m ...............G..C........................................-...C...T.....A.....C KT289925.1_Pimephales_promelas_m ..................C........................................-...C...T.....A.....C KT424924.1_Rhinichthys_osculus_m ................CA......................................G..-...G.........A.....C KU200257.1_Chanodichthys_ilishae ................C..........................................-.................... MF972070.1_Siphateles_bicolor_mo ..............G.C.C......................................T--.T.T......C..A.....C MG570407.1_Notropis_chalybaeus_v ................CAC........................................-...G...............A MG570408.1_Notropis_bifrenatus_v ...............TAAC.....................................G..-...G...............C MG570413.1_Notropis_heterolepis_ .................AT......................................G.-...G.........A.C...C MG570416.1_Rhinichthys_obtusus_v .................A.........................................-...G.........A.G...C MG570417.1_Rhinichthys_obtusus_v .................A.........................................-...G.........A.G...C MG570420.1_Pimephales_notatus_vo .................AC........................................-...G...T...........C MG570443.1_Notropis_hudsonius_is .................AC........................................-...G...............C MG570444.1_Rhinichthys_atratulus .................A.........................................-..GG.........A.G...C MG570445.1_Rhinichthys_atratulus .................A.........................................-..GG.........A.G...C MG570447.1_Luxilus_cornutus_isol .................AC........................................-...G...............C MG570449.1_Luxilus_cornutus_isol .................AC........................................-...G...............C MG570450.1_Pimephales_notatus_is .................AC........................................-...G...T...........C MG570451.1_Notropis_bifrenatus_i ...............TAAC.....................................G..-...G...............C MG570453.1_Exoglossum_maxillingu .................AC........................................-.T.G.........A.....C MG570454.1_Pimephales_promelas_i ..................C........................................-...C...T.....A.....C MG570455.1_Notropis_atherinoides ...............G.AC....................................G...-...G...............C MG570456.1_Notropis_atherinoides ...............G.AC....................................G...-...G...............C MG570457.1_Pimephales_notatus_is .................AC........................................-...G...T...........C MG570458.1_Pimephales_notatus_is .................AC........................................-...G...T...........C MK421554.1_Parabramis_pekinensis ...........................................................-.................... MT333789.1_Notropis_lutipinnis_v ..................C........................................-...G...T...........A MT364325.1_Hybognathus_amarus_mi ................CAC.....................................G..-...G...T.......G...C MT501368.1_Gila_cypha_isolate_SN ..............G.CC.......................................C--.T.T.........A.....C MT501369.1_Notropis_simus_pecose ................C.C........................................-...G......C........C MT501378.1_Hybognathus_amarus_is ................CAC.....................................G..-...G...T.......G...C MT501385.1_Notropis_jemezanus_vo ...............G.AC....................................GG..-...................C MT501391.1_Rhinichthys_osculus_i ................CG......................................G..-...G.........A.G.... MT667239.1_Rhinichthys_osculus_t ................CG......................................G..-...G.........A.G.... MT667242.1_Luxilus_cornutus_vouc .................AC........................................-...G...............C MW300340.1_Hybognathus_placitus_ .................AC.....................................G..-...G...T...........C MW300341.1_Hybognathus_placitus_ .................AC.....................................G..-...G...T...........C NC_013763.1_Mylocheilus_caurinus ................CCG........................................-.............A.....C NC_033926.1_Opsopoeodus_emiliae_ .................AT........................................-.......T...........C NC_037008.1_Notropis_chalybaeus_ ................CAC........................................-...G...............A NC_037009.1_Notropis_heterolepis .................AT......................................G.-...G.........A.C...C NC_037010.1_Rhinichthys_obtusus_ .................A.........................................-...G.........A.G...C NC_037014.1_Notropis_hudsonius_i .................AC........................................-...G...............C NC_037015.1_Exoglossum_maxilling .................AC........................................-.T.G.........A.....C NC_054086.1_Ptychocheilus_lucius ..........A...G.CC.......................................T--.T.C.........A.....C NC_054257.1_Gila_cypha_isolate_S ..............G.CC.......................................C--.T.T.........A.....C NC_054259.1_Gila_nigrescens_isol ................C........................................T--.T.T.........A.....C NC_054260.1_Hybognathus_amarus_i ................CAC.....................................G..-...G...T.......G...C NC_054262.1_Notropis_jemezanus_v ...............G.AC....................................GG..-...................C Pimephales_notatus_R2S3_________ .................AC........................................-...G...T...........C Pimephales_tenellus_tenellu_R2S1 ..................C.....................................G..-...GTT.T...........C Pimephales_tenellus_parvice_R2S2 ..................C.....................................G.C-....T..T...........C Pimephales_notatus_R1S1_________ .................AC........................................-...G...T...........C MG570452.1_Pimephales_promelas_i ..................C........................................-...C...T.....A.....C MG570452.1_Pimephales_promelas_S ..................C........................................-...C...T.....A.....C AB626850.1_Megalobrama_terminali AATAAAAAGCAAAAACTTAGTGGAAAGTGAAATTTTACCTTCGGTTGGGGCGACCGCGGAGGAAAAACAAGCCTCCGAGT AP010779.1_Mylocheilus_caurinus_ C....G......G..........C.GA........................................T............ AP011215.1_Gila_sp._1460_mitocho C..G.....T..G..........C.GA.A..C.......................A....A................... AP011263.1_Scardinius_erythropht TG..G.......G..........CG.A....G.......................A.......G...G............ AP011267.1_Algansea_lacustris_mi CG..G.......G......A...C-CA.......................................G............. AP011268.1_Yuriria_alta_mitochon C...C.......G......A...C-CA.......................................G............. AP011273.1_Hybognathus_nuchalis_ C...G.......G......A...C-CA............................A..........G............. AP011274.1_Couesius_plumbeus_mit T........T..G..........CCT....G........................A...........TG........... AP011275.1_Platygobio_gracilis_m CG..G.......G..........C-CA.....C......................A........................ AP011277.1_Erimystax_dissimilis_ ............G..........C-CA............................A........................ AP011279.1_Pimephales_promelas_m CG..G.......G.....T.....-TA.....C......................A........................ AP011280.1_Clinostomus_elongatus C...........G..........C..A.....C......................A.....A......G........... AP012079.1_Luxilus_chrysocephalu C...G.......G..........C-CA............................A..........G............. AP012080.1_Macrhybopsis_gelida_m C.A.........G.........A.-TC.A...C......................A........................ AP012083.1_Notropis_atherinoides C.....C.....G..........T-CA.......................................G............. AP012084.1_Notropis_baileyi_mito T..G...G....G..........C-CA......................................GG............. AP012087.1_Cyprinella_galactura_ ...G........G.........AC-.A....CA......................A........................ AP012088.1_Hybopsis_lineapunctat C..........GG......C...C-CA..G.........................A..........G............. AP012090.1_Luxilus_cornutus_mito C....G......G......A...C-C.....G.......................A..........G............. AP012091.1_Lythrurus_ardens_mito CC..........G..........C-C.....G.......................A.........G.............. AP012092.1_Lythrurus_fumeus_mito CC..........G.........AC-CA....G.......................A..........G............. AP012093.1_Lythrurus_lirus_mitoc CC..........G......A...C-C.....G..................................G............. AP012094.1_Lythrurus_umbratilis_ CC..........G..........C-C.....G.......................A.........GG............. AP012095.1_Macrhybopsis_meeki_mi C.A.........G......A....-.A.A...C......................A...........T............ AP012097.1_Notropis_bifrenatus_m TG..........G......A...C-CA............................A........................ AP012098.1_Pimephales_sp._MCZunc C...G.......G.....TA...C-CA.....C......................A..........G............. AP012100.1_Notropis_telescopus_m C..G........G......A...C-CA...G........................A..........G............. AP012101.1_Pimephales_notatus_mi C...G.......G.....TA...T-CA.....C......................A..........G............. AP012102.1_Pimephales_vigilax_mi TT..........C.....TA....-CA.....C......................A.....T....GG..A......... AP012103.1_Pogonichthys_macrolep C...........G..........C..A.......................................G............. AP012106.1_Richardsonius_balteat CG...G.....GG..........T..A...G.C.................................G............. AP012108.1_Notropis_chrosomus_mi T...G.......G......A...C-C.....G.......................A........................ AY216542.1_Lythrurus_umbratilus_ CC..........G..........C-CC....G.......................A.........G.A............ Pimephales_vigilax_R1S2_________ TT..........C.....TA....-CA.....C......................A.....T....GG..A......... Pimephales_vigilax_R1S3_________ TT..........C.....TA...G-CA.....C......................A.....T....GG..A......... DQ536429.1_Notropis_stramineus_m CG.G........G..........C-CA....T.......................A..........G............. JX910141.1_Squaliobarbus_curricu ............G.............A....G.......................A........................ KC351187.1_Squaliobarbus_curricu ............G.............A....G.......................A........................ KT278765.1_Pimephales_promelas_m C...G.......G.....TA...G-TA.....C......................A........................ KT289925.1_Pimephales_promelas_m CG..G.......G.....T.....-TA.....C......................A........................ KT424924.1_Rhinichthys_osculus_m C...C.......G.........AC-CA............................A..........GT............ KU200257.1_Chanodichthys_ilishae ..........................A....G.......................A........................ MF972070.1_Siphateles_bicolor_mo C........T..G..........C..A..G.........................A............G........... MG570407.1_Notropis_chalybaeus_v C...........G.........AC-CA...G........................A........................ MG570408.1_Notropis_bifrenatus_v TG..........G......A...C-CA............................A........................ MG570413.1_Notropis_heterolepis_ C...........G..........C-T....G........................A........................ MG570416.1_Rhinichthys_obtusus_v CT...G......G..........C-CA............................A...........T............ MG570417.1_Rhinichthys_obtusus_v CT...G......G..........C-CA............................A...........T............ MG570420.1_Pimephales_notatus_vo C...G.......G.....TA...C-CA.....C......................A..........G............. MG570443.1_Notropis_hudsonius_is .G..G.......G..........C-CA....G.......................A..........G............. MG570444.1_Rhinichthys_atratulus CC...G.....GG..........C-CAC...........................A...........T............ MG570445.1_Rhinichthys_atratulus CC...G.....GG..........C-CAC...........................A...........T............ MG570447.1_Luxilus_cornutus_isol CT...G......G......A...C-CA....G.......................A..........G............. MG570449.1_Luxilus_cornutus_isol CT...G......G......A...C-CA....G.......................A..........G............. MG570450.1_Pimephales_notatus_is C...G.......G.....TA...C-CA.....C......................A..........G............. MG570451.1_Notropis_bifrenatus_i TG..........G......A...C-CA............................A........................ MG570453.1_Exoglossum_maxillingu ............G..........C-CA............................A........................ MG570454.1_Pimephales_promelas_i CG..G.......G.....T.....-TA...G.C......................A........................ MG570455.1_Notropis_atherinoides CG....C.....G..........T-CA.......................................G............. MG570456.1_Notropis_atherinoides C.....C.....G..........T-CA.......................................G............. MG570457.1_Pimephales_notatus_is C...G.......G.....TA...C-CA.....C......................A..........G............. MG570458.1_Pimephales_notatus_is C...G.......G.....TA...C-CA.....C......................A..........G............. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v C...........G..........C-CA....G.......................A........................ MT364325.1_Hybognathus_amarus_mi C..GG.......G......A...C-CA............................A..........G............. MT501368.1_Gila_cypha_isolate_SN T........T..G..........C..A.A................................................... MT501369.1_Notropis_simus_pecose T.C.G.......G..........T-CA...G...................................G............. MT501378.1_Hybognathus_amarus_is C..GG.......G......A...C-CA............................A..........G............. MT501385.1_Notropis_jemezanus_vo C.....G.....G..........T-CC....G..................................G............. MT501391.1_Rhinichthys_osculus_i T...G.G.....G..........C-CA............................A.........G.T............ MT667239.1_Rhinichthys_osculus_t T...G.G.....G..........C-CA............................A.........G.T............ MT667242.1_Luxilus_cornutus_vouc CT...G......G......A...C-CA....G.......................A..........G............. MW300340.1_Hybognathus_placitus_ CG..G.......G..........C-C.............................A........................ MW300341.1_Hybognathus_placitus_ CG..G.......G..........C-C.............................A..........G............. NC_013763.1_Mylocheilus_caurinus C....G......G..........C.GA........................................T............ NC_033926.1_Opsopoeodus_emiliae_ C......C....G.....TA...C-TA...G.C......................A....A.....G............. NC_037008.1_Notropis_chalybaeus_ C...........G.........AC-CA...G........................A........................ NC_037009.1_Notropis_heterolepis C...........G..........C-T....G........................A........................ NC_037010.1_Rhinichthys_obtusus_ CT...G......G..........C-CA............................A...........T............ NC_037014.1_Notropis_hudsonius_i .G..G.......G..........C-CA....G.......................A..........G............. NC_037015.1_Exoglossum_maxilling ............G..........C-CA............................A........................ NC_054086.1_Ptychocheilus_lucius T........T..G..........C..A.A...C......................A...........T............ NC_054257.1_Gila_cypha_isolate_S T........T..G..........C..A.A................................................... NC_054259.1_Gila_nigrescens_isol C........T..G..........C..A.A..C.......................A....A.....G............. NC_054260.1_Hybognathus_amarus_i C..GG.......G......A...C-CA............................A..........G............. NC_054262.1_Notropis_jemezanus_v C.....G.....G..........T-CC....G..................................G............. Pimephales_notatus_R2S3_________ T...........G.....T....C-CA....CC......................A..........G............. Pimephales_tenellus_tenellu_R2S1 C...G.......G.....TA..AC-CA.....C............................................... Pimephales_tenellus_parvice_R2S2 C...G.............T...AC-CA.....C......................A........................ Pimephales_notatus_R1S1_________ T...........G.....T....C-CA....CC......................A..........G............. MG570452.1_Pimephales_promelas_i CG..G.......G.....T.....-TA...G.C......................A........................ MG570452.1_Pimephales_promelas_S CG..G.......G.....T.....-TA.....C......................A........................ AB626850.1_Megalobrama_terminali GGAATGGGCC--AAACCCCTAAAACCAAGAGAAACATCTCTAAGCCACAGAACATCTGACCAAAAATGATCCGGCCAATA AP010779.1_Mylocheilus_caurinus_ ...C......-A.-.........G.T..A..........A......G..........................A.T..-. AP011215.1_Gila_sp._1460_mitocho ...C....G.--GG.........G....T..........A......G.....T....................A..TCAG AP011263.1_Scardinius_erythropht ........TT-A..--...C...G.T......T.............G...G......................A.TG... AP011267.1_Algansea_lacustris_mi ...C......-A.G.........G....A..........T......G................C.........A.T..-. AP011268.1_Yuriria_alta_mitochon ...C......-A.G.........G....A..........T......G................T.G.............. AP011273.1_Hybognathus_nuchalis_ ...C......-A...........G....A...G......T......G................T...........T..-. AP011274.1_Couesius_plumbeus_mit ...C......--...T.......T..G.A...G......T..G.........T..........T...........TC.-. AP011275.1_Platygobio_gracilis_m ...C......-A...........G........G......T......G................T...........T.... AP011277.1_Erimystax_dissimilis_ ...T......-A...........G...............T......G................T.........A.T.G-. AP011279.1_Pimephales_promelas_m ...C......AA...........G.T..A...G......T......G................T...........T..-. AP011280.1_Clinostomus_elongatus ...C......-A.-.........G.T.............A......G..........................A.G..-. AP012079.1_Luxilus_chrysocephalu ...C......-A.G.........G....A..G....C..T......G................C...........T.... AP012080.1_Macrhybopsis_gelida_m ...C......-A.G.-.......G....A..........T......G................T...........T.--. AP012083.1_Notropis_atherinoides ...C......-G.G.-.......G...............TC.....G................T...........T.G-. AP012084.1_Notropis_baileyi_mito ...C......-A...........G.T..A...G......TA.....G................C...........T..C. AP012087.1_Cyprinella_galactura_ ...C......--.T.........G....A..........T.......................T...........T..-T AP012088.1_Hybopsis_lineapunctat ...C....A.--...........G.T..A.A.G....T.T......G................T...........T...G AP012090.1_Luxilus_cornutus_mito ...C......-A.C.........G....A...G......T......G.....T..........T..G........T..-. AP012091.1_Lythrurus_ardens_mito ...C......-G...........G....A...G......T.G....G................T...........T..-. AP012092.1_Lythrurus_fumeus_mito ...C......-A.G.........G....A...G......T......G................T.G.........T..-. AP012093.1_Lythrurus_lirus_mitoc ...C.....T-G.G.........G....A...G......TAG....G................T...........T..-. AP012094.1_Lythrurus_umbratilis_ ...C......-G...........G....A...G......T.G....G................T...........T..-. AP012095.1_Macrhybopsis_meeki_mi ...C......-A.G.-.......G....A..........T......G................T...........T.--. AP012097.1_Notropis_bifrenatus_m ...C......-G...........G.T..A...G......TC.....G................T...........T.... AP012098.1_Pimephales_sp._MCZunc ...C......-A.-.........G.T..A...G......T......G................C.........A....-G AP012100.1_Notropis_telescopus_m ...C......-A...........G.T..A..........T......G................T...........T.T.. AP012101.1_Pimephales_notatus_mi ...C......-A.-.........G.T..A...G......T......G................T.........A....-G AP012102.1_Pimephales_vigilax_mi ...C......-A.-.........G.T..A...G......T......G.....A..........T..........TT..-C AP012103.1_Pogonichthys_macrolep ...T......--...........G....A...G......A......G...............................-. AP012106.1_Richardsonius_balteat ...C......-G.-.........G.T.............A......G..........................A.T..-. AP012108.1_Notropis_chrosomus_mi ...T.....T-A.C.........G.T..A...G......TA.....G................T...........TCG-. AY216542.1_Lythrurus_umbratilus_ ...C......-G.G.........G....A...G......T......G................T...........T..-. Pimephales_vigilax_R1S2_________ ...C......-A.-.........G.T..A...G......T......G.....A..........T..........TT..-C Pimephales_vigilax_R1S3_________ ...C......-A.-.........G.T......G......T......G.....A..........T...........T..-C DQ536429.1_Notropis_stramineus_m ...C......-G.C.........G...TA...G......T......G................T...........T---. JX910141.1_Squaliobarbus_curricu ..........-A.-.T...........................................................T.C.. KC351187.1_Squaliobarbus_curricu ..........-A.-.T...........................................................T.C.. KT278765.1_Pimephales_promelas_m ...C......-A...T.......G.TG.A...G......T......G................T...........T..-. KT289925.1_Pimephales_promelas_m ...C......AA...........G.T..A...G......T......G................T...........T..-G KT424924.1_Rhinichthys_osculus_m ...C......-A.-.........G......................G................T.........A.TG.-. KU200257.1_Chanodichthys_ilishae ..........--............TT......G..........................................T.... MF972070.1_Siphateles_bicolor_mo ...C......--G..........G.T..T..........A......G.....T....................A...CAG MG570407.1_Notropis_chalybaeus_v ...C......-A.............T..A..........TG.....G................T...........T.... MG570408.1_Notropis_bifrenatus_v ...C......-G...........G.T..A...G......TC.....G................T...........T.... MG570413.1_Notropis_heterolepis_ ...C......-A...........G....A...G......T......G................T...........T..-. MG570416.1_Rhinichthys_obtusus_v ...C......--...........G......................G.....T..........T.........A.T..-. MG570417.1_Rhinichthys_obtusus_v ...C......--...........G......................G.....T..........T.........A.T..-. MG570420.1_Pimephales_notatus_vo ...C......-A.-.........G.T..A...G......T......G................C.........A....-G MG570443.1_Notropis_hudsonius_is ...CC.....-A...T.......G....A...G......T......G................T...........T..-. MG570444.1_Rhinichthys_atratulus ...C......--...........G......................G.....T..........T.........A.T..-. MG570445.1_Rhinichthys_atratulus ...C......--...........G......................G.....T..........T.........A.T..-. MG570447.1_Luxilus_cornutus_isol ...C......-A.C.........G....A...G......T......G.....T..........T..G........T..-. MG570449.1_Luxilus_cornutus_isol ...C......-A.C.........G....A...G......T......G.....T..........T..G........T..-. MG570450.1_Pimephales_notatus_is ...C......-A.-.........G.T..A...G......T......G................C.........A....-G MG570451.1_Notropis_bifrenatus_i ...C......-G...........G.T..A...G......TC.....G................T...........T.... MG570453.1_Exoglossum_maxillingu ...T......-A...........G...............T......G................T.........A.T.G-. MG570454.1_Pimephales_promelas_i ...C......AA...........G.T..A...G......T......G................T...........T..-. MG570455.1_Notropis_atherinoides ..GC......-G.G.-.......G...............TC.....G................T...........T..-. MG570456.1_Notropis_atherinoides ...C......-G.G.-.......G...............TC.....G................T...........T.G-. MG570457.1_Pimephales_notatus_is ...C......-A.-.........G.T..A...G......T......G................C.........A....-G MG570458.1_Pimephales_notatus_is ...C......-A.-.........G.T..A...G......T......G................C.........A....-G MK421554.1_Parabramis_pekinensis ..........--.................................................................... MT333789.1_Notropis_lutipinnis_v .......A..-A...........G.T..A...G......TA.G...G................T..........TT.--. MT364325.1_Hybognathus_amarus_mi ...C......-A...........G....A...G......T......G................C...........T..-. MT501368.1_Gila_cypha_isolate_SN ...C....G.--...........G....T..........A......G.....T....................A.TCCAG MT501369.1_Notropis_simus_pecose ...CC.....-A...........G.T..A..........TA.G...G................C...........T..-G MT501378.1_Hybognathus_amarus_is ...C......-A...........G....A...G......T......G................C...........T..-. MT501385.1_Notropis_jemezanus_vo ...C......-G.G.-.......G...............TC.....G................T...........TCG-. MT501391.1_Rhinichthys_osculus_i ...C.....T-A.-.T.......G......................G................CG........A.T..-. MT667239.1_Rhinichthys_osculus_t ...C.....T-A.-.T.......G......................G................C.........A.T..-. MT667242.1_Luxilus_cornutus_vouc ...C......-A.C.........G....A...G......T......G.....T..........T..G........T..-. MW300340.1_Hybognathus_placitus_ ...C......-G.C.........G....A...G......T......G................T...........T..-. MW300341.1_Hybognathus_placitus_ ...C......-G.C.........G....A...G......T..G...G................T...........T..-. NC_013763.1_Mylocheilus_caurinus ...C......-A.-.........G.T..A..........A......G..........................A.T..-. NC_033926.1_Opsopoeodus_emiliae_ ...C......-A.-.........G.T..A...G......T......G................T...........T---. NC_037008.1_Notropis_chalybaeus_ ...C......-A.............T..A..........TG.....G................T...........T.... NC_037009.1_Notropis_heterolepis ...C......-A...........G....A...G......T......G................T...........T..-. NC_037010.1_Rhinichthys_obtusus_ ...C......--...........G......................G.....T..........T.........A.T..-. NC_037014.1_Notropis_hudsonius_i ...CC.....-A...T.......G....A...G......T......G................T...........T..-. NC_037015.1_Exoglossum_maxilling ...T......-A...........G...............T......G................T.........A.T.G-. NC_054086.1_Ptychocheilus_lucius ...C....G.--...........G....T..........A............T....................A..CCA. NC_054257.1_Gila_cypha_isolate_S ...C....G.--...........G....T..........A......G.....T....................A.TCCAG NC_054259.1_Gila_nigrescens_isol ...C....GT--...........G....T..........A......G.....T....................A..CCAG NC_054260.1_Hybognathus_amarus_i ...C......-A...........G....A...G......T......G................C...........T..-. NC_054262.1_Notropis_jemezanus_v ...C......-G.G.-.......G...............TC.....G................T...........TCG-. Pimephales_notatus_R2S3_________ ...C......-A.-.........G.T..A...G......T......G................C.........A.TG.-G Pimephales_tenellus_tenellu_R2S1 ...C......-A...........G.T..A...G......T......G................T...........T.... Pimephales_tenellus_parvice_R2S2 ...C......-A.G.........G.T..A...G......T......G................T...........T.... Pimephales_notatus_R1S1_________ ...C......-A.-.........G.T..A...G......T......G................C.........A.TG.-G MG570452.1_Pimephales_promelas_i ...C......AA...........G.T..A...G......T......G................T...........T..-. MG570452.1_Pimephales_promelas_S ...C......AA...........G.T..A...G......T......G................T...........T..-. AB626850.1_Megalobrama_terminali AAGCCGATCAACGAACCAAGTTACCCTAGGGATAACAGCGCAATCCTCTCCCAGAGTCCATATCGACGAGGGGGTTTACG AP010779.1_Mylocheilus_caurinus_ ................................................................................ AP011215.1_Gila_sp._1460_mitocho .G.T.........G................................C................................. AP011263.1_Scardinius_erythropht ................................................................................ AP011267.1_Algansea_lacustris_mi .............G..........................................C....................... AP011268.1_Yuriria_alta_mitochon .G......................................................C....................... AP011273.1_Hybognathus_nuchalis_ .C...........G..........................................C....................... AP011274.1_Couesius_plumbeus_mit .T......................................................C..G.................... AP011275.1_Platygobio_gracilis_m ........................................................C....................... AP011277.1_Erimystax_dissimilis_ G.......................................................C....................... AP011279.1_Pimephales_promelas_m .............G..........................................C....................... AP011280.1_Clinostomus_elongatus ................................................................................ AP012079.1_Luxilus_chrysocephalu .............G..........................................C....................... AP012080.1_Macrhybopsis_gelida_m ........................................................C..T.................... AP012083.1_Notropis_atherinoides .............G..........................................C....................... AP012084.1_Notropis_baileyi_mito G............G..........................................C....................... AP012087.1_Cyprinella_galactura_ .......C.....G..........................................C....................... AP012088.1_Hybopsis_lineapunctat .G......................................................C....................... AP012090.1_Luxilus_cornutus_mito .............G..........................................C....................... AP012091.1_Lythrurus_ardens_mito .............G..........................................C....................... AP012092.1_Lythrurus_fumeus_mito ..........G..G..........................................C....................... AP012093.1_Lythrurus_lirus_mitoc .G...........G..........................................C....................... AP012094.1_Lythrurus_umbratilis_ .............G..........................................C....................... AP012095.1_Macrhybopsis_meeki_mi ........................................................C..T.................... AP012097.1_Notropis_bifrenatus_m ........................................................C....................... AP012098.1_Pimephales_sp._MCZunc .G.T.........G..........................................C....................... AP012100.1_Notropis_telescopus_m .G...........G..........................................C....................... AP012101.1_Pimephales_notatus_mi .G.T.........G..........................................C....................... AP012102.1_Pimephales_vigilax_mi ........................................................C.............A......... AP012103.1_Pogonichthys_macrolep ................................................................................ AP012106.1_Richardsonius_balteat ................................................................................ AP012108.1_Notropis_chrosomus_mi CG...........G..........................................C....................... AY216542.1_Lythrurus_umbratilus_ ..........G..G..........................................C....................... Pimephales_vigilax_R1S2_________ ........................................................C.............A......... Pimephales_vigilax_R1S3_________ ........................................................C.............A......... DQ536429.1_Notropis_stramineus_m .............G..........................................C....................... JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m .............G..........................................C....................... KT289925.1_Pimephales_promelas_m .............G..........................................C....................... KT424924.1_Rhinichthys_osculus_m ........................................................C....................... KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo TG.T..........................................C................................. MG570407.1_Notropis_chalybaeus_v ........................................................C....................... MG570408.1_Notropis_bifrenatus_v ........................................................C....................... MG570413.1_Notropis_heterolepis_ C............G..........................................C....................... MG570416.1_Rhinichthys_obtusus_v ...T....................................................C....................... MG570417.1_Rhinichthys_obtusus_v ...T....................................................C....................... MG570420.1_Pimephales_notatus_vo .G.T.........G..........................................C....................... MG570443.1_Notropis_hudsonius_is .G...........G..........................................A.......T............... MG570444.1_Rhinichthys_atratulus ...T....................................................C....................... MG570445.1_Rhinichthys_atratulus ...T....................................................C....................... MG570447.1_Luxilus_cornutus_isol .............G..........................................C....................... MG570449.1_Luxilus_cornutus_isol .............G..........................................C....................... MG570450.1_Pimephales_notatus_is .G.T.........G..........................................C....................... MG570451.1_Notropis_bifrenatus_i ........................................................C....................... MG570453.1_Exoglossum_maxillingu G.......................................................C....................... MG570454.1_Pimephales_promelas_i .............G..........................................C....................... MG570455.1_Notropis_atherinoides .............G..........................................C....................... MG570456.1_Notropis_atherinoides .............G..........................................C....................... MG570457.1_Pimephales_notatus_is .G.T.........G..........................................C....................... MG570458.1_Pimephales_notatus_is .G.T.........G..........................................C....................... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..A.......G..G..........................................C....................... MT364325.1_Hybognathus_amarus_mi .............G..........................................C....................... MT501368.1_Gila_cypha_isolate_SN ...T..........................................C................................. MT501369.1_Notropis_simus_pecose .G...........G..........................................C....................... MT501378.1_Hybognathus_amarus_is .............G..........................................C....................... MT501385.1_Notropis_jemezanus_vo .............G..........................................C....................... MT501391.1_Rhinichthys_osculus_i ........................................................C....................... MT667239.1_Rhinichthys_osculus_t ........................................................C....................... MT667242.1_Luxilus_cornutus_vouc .............G..........................................C....................... MW300340.1_Hybognathus_placitus_ .............G..........................................C....................... MW300341.1_Hybognathus_placitus_ .............G..........................................C....................... NC_013763.1_Mylocheilus_caurinus ................................................................................ NC_033926.1_Opsopoeodus_emiliae_ .............G........................................................A......... NC_037008.1_Notropis_chalybaeus_ ........................................................C....................... NC_037009.1_Notropis_heterolepis C............G..........................................C....................... NC_037010.1_Rhinichthys_obtusus_ ...T....................................................C....................... NC_037014.1_Notropis_hudsonius_i .G...........G..........................................A.......T............... NC_037015.1_Exoglossum_maxilling G.......................................................C....................... NC_054086.1_Ptychocheilus_lucius .G.T..........................................C................................. NC_054257.1_Gila_cypha_isolate_S ...T..........................................C................................. NC_054259.1_Gila_nigrescens_isol .G.T.........G................................C................................. NC_054260.1_Hybognathus_amarus_i .............G..........................................C....................... NC_054262.1_Notropis_jemezanus_v .............G..........................................C....................... Pimephales_notatus_R2S3_________ .G.T.........G..........................................C....................... Pimephales_tenellus_tenellu_R2S1 ........................................................C....................... Pimephales_tenellus_parvice_R2S2 G.......................................................C....................... Pimephales_notatus_R1S1_________ .G.T.........G..........................................C....................... MG570452.1_Pimephales_promelas_i .............G..........................................C....................... MG570452.1_Pimephales_promelas_S .............G..........................................C....................... AB626850.1_Megalobrama_terminali ACCTCGATGTTGGATCAGGACATCCTAATGGTGCAGCCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCCTACGTG AP010779.1_Mylocheilus_caurinus_ ................................................................................ AP011215.1_Gila_sp._1460_mitocho ................................................................................ AP011263.1_Scardinius_erythropht ................................................................................ AP011267.1_Algansea_lacustris_mi ..........................G................C.................................... AP011268.1_Yuriria_alta_mitochon ..........................GG...............C.................................... AP011273.1_Hybognathus_nuchalis_ ..........................GG.................................................... AP011274.1_Couesius_plumbeus_mit ................................................................................ AP011275.1_Platygobio_gracilis_m ..........................GG.................................................... AP011277.1_Erimystax_dissimilis_ ................................................................................ AP011279.1_Pimephales_promelas_m ..........................GG.................................................... AP011280.1_Clinostomus_elongatus ................................................................................ AP012079.1_Luxilus_chrysocephalu ..........................GG.................................................... AP012080.1_Macrhybopsis_gelida_m ..........................G..................................................... AP012083.1_Notropis_atherinoides ..........................GG.................................................... AP012084.1_Notropis_baileyi_mito ..........................GG.................................................... AP012087.1_Cyprinella_galactura_ ..........................GG.................................................... AP012088.1_Hybopsis_lineapunctat ..........................G..................................................... AP012090.1_Luxilus_cornutus_mito ..........................GG.................................................... AP012091.1_Lythrurus_ardens_mito ..........................GG.....T.............................................. AP012092.1_Lythrurus_fumeus_mito ..........................GG.....T.............................................. AP012093.1_Lythrurus_lirus_mitoc ..........................GG.....T.............................................. AP012094.1_Lythrurus_umbratilis_ ..........................GG.....T.............................................. AP012095.1_Macrhybopsis_meeki_mi ..........................G..................................................... AP012097.1_Notropis_bifrenatus_m ..........................GG.................................................... AP012098.1_Pimephales_sp._MCZunc ..........................G..................................................... AP012100.1_Notropis_telescopus_m ..........................G..................................................... AP012101.1_Pimephales_notatus_mi ..........................G..................................................... AP012102.1_Pimephales_vigilax_mi ................................................................................ AP012103.1_Pogonichthys_macrolep ................................................................................ AP012106.1_Richardsonius_balteat ................................................................................ AP012108.1_Notropis_chrosomus_mi ..........................GG..............C..................................... AY216542.1_Lythrurus_umbratilus_ ..........................GG.....T.............................................. Pimephales_vigilax_R1S2_________ ................................................................................ Pimephales_vigilax_R1S3_________ ................................................................................ DQ536429.1_Notropis_stramineus_m .........................C...................................................... JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m ..........................GG.................................................... KT289925.1_Pimephales_promelas_m ................................................................................ KT424924.1_Rhinichthys_osculus_m ................................................................................ KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo ................................................................................ MG570407.1_Notropis_chalybaeus_v ..........................G..................................................... MG570408.1_Notropis_bifrenatus_v ..........................GG.................................................... MG570413.1_Notropis_heterolepis_ ................................................................................ MG570416.1_Rhinichthys_obtusus_v ................................................................................ MG570417.1_Rhinichthys_obtusus_v ................................................................................ MG570420.1_Pimephales_notatus_vo ..........................G..................................................... MG570443.1_Notropis_hudsonius_is ..........................GG.................................................... MG570444.1_Rhinichthys_atratulus ................................................................................ MG570445.1_Rhinichthys_atratulus ................................................................................ MG570447.1_Luxilus_cornutus_isol ..........................G..................................................... MG570449.1_Luxilus_cornutus_isol ..........................G..................................................... MG570450.1_Pimephales_notatus_is ..........................G..................................................... MG570451.1_Notropis_bifrenatus_i ..........................GG.................................................... MG570453.1_Exoglossum_maxillingu ................................................................................ MG570454.1_Pimephales_promelas_i ..........................GG.................................................... MG570455.1_Notropis_atherinoides ..........................GG.................................................... MG570456.1_Notropis_atherinoides ..........................GG.................................................... MG570457.1_Pimephales_notatus_is ..........................G..................................................... MG570458.1_Pimephales_notatus_is ..........................G..................................................... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..........................G..................................................... MT364325.1_Hybognathus_amarus_mi ..........................G..................................................... MT501368.1_Gila_cypha_isolate_SN ................................................................................ MT501369.1_Notropis_simus_pecose ..........................GG.................................................... MT501378.1_Hybognathus_amarus_is ..........................G..................................................... MT501385.1_Notropis_jemezanus_vo ..........................GG.................................................... MT501391.1_Rhinichthys_osculus_i ................................................................................ MT667239.1_Rhinichthys_osculus_t ................................................................................ MT667242.1_Luxilus_cornutus_vouc ..........................G..................................................... MW300340.1_Hybognathus_placitus_ ..........................GG.................................................... MW300341.1_Hybognathus_placitus_ ..........................GG.................................................... NC_013763.1_Mylocheilus_caurinus ................................................................................ NC_033926.1_Opsopoeodus_emiliae_ ................................................................................ NC_037008.1_Notropis_chalybaeus_ ..........................G..................................................... NC_037009.1_Notropis_heterolepis ................................................................................ NC_037010.1_Rhinichthys_obtusus_ ................................................................................ NC_037014.1_Notropis_hudsonius_i ..........................GG.................................................... NC_037015.1_Exoglossum_maxilling ................................................................................ NC_054086.1_Ptychocheilus_lucius ................................................................................ NC_054257.1_Gila_cypha_isolate_S ................................................................................ NC_054259.1_Gila_nigrescens_isol ................................................................................ NC_054260.1_Hybognathus_amarus_i ..........................G..................................................... NC_054262.1_Notropis_jemezanus_v ..........................GG.................................................... Pimephales_notatus_R2S3_________ ..........................G..................................................... Pimephales_tenellus_tenellu_R2S1 ...........................G.................................................... Pimephales_tenellus_parvice_R2S2 ...........................G.................................................... Pimephales_notatus_R1S1_________ ..........................G..................................................... MG570452.1_Pimephales_promelas_i ..........................GG.................................................... MG570452.1_Pimephales_promelas_S ..........................GG.................................................... AB626850.1_Megalobrama_terminali ATCTGAGTTCAGACCGGAGCAATCCAGGTCAGTTTCTATCTGTAACGCTACTTTTCCTAGTACGAAAGGATCGGAAAAGA AP010779.1_Mylocheilus_caurinus_ ................................................C............................... AP011215.1_Gila_sp._1460_mitocho ...................T........................G..........................T.......G AP011263.1_Scardinius_erythropht ............................................G................................... AP011267.1_Algansea_lacustris_mi .........................................................C...................... AP011268.1_Yuriria_alta_mitochon .................................................G.......C.....................G AP011273.1_Hybognathus_nuchalis_ .........................................................C...................... AP011274.1_Couesius_plumbeus_mit ...................T............................................................ AP011275.1_Platygobio_gracilis_m ................................................................................ AP011277.1_Erimystax_dissimilis_ .......................................................T.C...............A...... AP011279.1_Pimephales_promelas_m .................................................G.......C............C........G AP011280.1_Clinostomus_elongatus ...........A..A..........................................C...................... AP012079.1_Luxilus_chrysocephalu .........................................................C.....................G AP012080.1_Macrhybopsis_gelida_m .........................................................C....................AG AP012083.1_Notropis_atherinoides .........................................................C...................... AP012084.1_Notropis_baileyi_mito ................................................................................ AP012087.1_Cyprinella_galactura_ ...............................................................................G AP012088.1_Hybopsis_lineapunctat ................................................................................ AP012090.1_Luxilus_cornutus_mito .........................................................C...................... AP012091.1_Lythrurus_ardens_mito ................................................................................ AP012092.1_Lythrurus_fumeus_mito .........................................................C...................... AP012093.1_Lythrurus_lirus_mitoc ................................................................................ AP012094.1_Lythrurus_umbratilis_ ................................................................................ AP012095.1_Macrhybopsis_meeki_mi .........................................................C....................AG AP012097.1_Notropis_bifrenatus_m .........................................................C...................... AP012098.1_Pimephales_sp._MCZunc .........................................................C.....................G AP012100.1_Notropis_telescopus_m ......................................................C..C...................... AP012101.1_Pimephales_notatus_mi .........................................................C.....................G AP012102.1_Pimephales_vigilax_mi ..................................................T...........................AG AP012103.1_Pogonichthys_macrolep ................................................C............................... AP012106.1_Richardsonius_balteat .........................................................C...................... AP012108.1_Notropis_chrosomus_mi .......................................................T........................ AY216542.1_Lythrurus_umbratilus_ ................................................................................ Pimephales_vigilax_R1S2_________ ..................................................T...........................AG Pimephales_vigilax_R1S3_________ ..................................................T...........................AG DQ536429.1_Notropis_stramineus_m ......................................................C...................G..... JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m .................................................G.......C............C........G KT289925.1_Pimephales_promelas_m .................................................G.......C............C........G KT424924.1_Rhinichthys_osculus_m .......................................................T.C...................... KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo ...................T...................................................T........ MG570407.1_Notropis_chalybaeus_v ................................................................................ MG570408.1_Notropis_bifrenatus_v .........................................................C...................... MG570413.1_Notropis_heterolepis_ .......................................................................T........ MG570416.1_Rhinichthys_obtusus_v ................................................................................ MG570417.1_Rhinichthys_obtusus_v ................................................................................ MG570420.1_Pimephales_notatus_vo .........................................................C.....................G MG570443.1_Notropis_hudsonius_is ................................................................................ MG570444.1_Rhinichthys_atratulus .........................................................C...................... MG570445.1_Rhinichthys_atratulus .........................................................C...................... MG570447.1_Luxilus_cornutus_isol .........................................................C...................... MG570449.1_Luxilus_cornutus_isol .........................................................C...................... MG570450.1_Pimephales_notatus_is .........................................................C.....................G MG570451.1_Notropis_bifrenatus_i .........................................................C...................... MG570453.1_Exoglossum_maxillingu .......................................................T.C...............A...... MG570454.1_Pimephales_promelas_i .................................................G.......C............C........G MG570455.1_Notropis_atherinoides .........................................................C...................... MG570456.1_Notropis_atherinoides .........................................................C...................... MG570457.1_Pimephales_notatus_is .........................................................C.....................G MG570458.1_Pimephales_notatus_is .........................................................C.....................G MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .........................................................C...................... MT364325.1_Hybognathus_amarus_mi .........................................................C.....................G MT501368.1_Gila_cypha_isolate_SN ...................T...................................................T........ MT501369.1_Notropis_simus_pecose ..............................................................................AG MT501378.1_Hybognathus_amarus_is .........................................................C.....................G MT501385.1_Notropis_jemezanus_vo .........................................................C.....................G MT501391.1_Rhinichthys_osculus_i .................................................G.....T.C...............A...... MT667239.1_Rhinichthys_osculus_t .................................................G.....T.C...............A...... MT667242.1_Luxilus_cornutus_vouc .........................................................C...................... MW300340.1_Hybognathus_placitus_ ................................................................................ MW300341.1_Hybognathus_placitus_ ................................................................................ NC_013763.1_Mylocheilus_caurinus ................................................C............................... NC_033926.1_Opsopoeodus_emiliae_ .........................................................C....................TG NC_037008.1_Notropis_chalybaeus_ ................................................................................ NC_037009.1_Notropis_heterolepis .......................................................................T........ NC_037010.1_Rhinichthys_obtusus_ ................................................................................ NC_037014.1_Notropis_hudsonius_i ................................................................................ NC_037015.1_Exoglossum_maxilling .......................................................T.C...............A...... NC_054086.1_Ptychocheilus_lucius ...................T...................................................T........ NC_054257.1_Gila_cypha_isolate_S ...................T...................................................T........ NC_054259.1_Gila_nigrescens_isol ...................T...................................................T........ NC_054260.1_Hybognathus_amarus_i .........................................................C.....................G NC_054262.1_Notropis_jemezanus_v .........................................................C.....................G Pimephales_notatus_R2S3_________ .........................................................C...................G.. Pimephales_tenellus_tenellu_R2S1 ......................................................C..C............C........G Pimephales_tenellus_parvice_R2S2 ......................................................C..C............C........G Pimephales_notatus_R1S1_________ .........................................................C...................G.. MG570452.1_Pimephales_promelas_i .................................................G.......C............C........G MG570452.1_Pimephales_promelas_S .................................................G.......C............C........G AB626850.1_Megalobrama_terminali GGGGCCCATACTTAAAGCACGCCCCACCCCTAATTAATGAAAACAAATAAATTAAATAAAGGGAGGGCCAAAACCCCAAC AP010779.1_Mylocheilus_caurinus_ .........G.CC......TA..............G...................G......A......G.......TG. AP011215.1_Gila_sp._1460_mitocho .........G.....G.........G....A........................G.....................TG. AP011263.1_Scardinius_erythropht ..............G....T.....G.........G...................G.....................TG. AP011267.1_Algansea_lacustris_mi ......T....C...C...T...............C....................G-...................T.. AP011268.1_Yuriria_alta_mitochon ......T..G.C...C...T...............C.....................-...................TG. AP011273.1_Hybognathus_nuchalis_ ......T....C...C...T...............C................A....-...................TG. AP011274.1_Couesius_plumbeus_mit ............C......T.....G.........C...................G................G....T.. AP011275.1_Platygobio_gracilis_m ..............G....T...............C.....................-............G......TG. AP011277.1_Erimystax_dissimilis_ ......T..G.........T...............................C...G......A..............T.. AP011279.1_Pimephales_promelas_m .........G.....C...T.....G.........C.....................-...................TG. AP011280.1_Clinostomus_elongatus ...................T...............G...T...............G.......C.............TG. AP012079.1_Luxilus_chrysocephalu ......T........C...T...............C.....................-...................TG. AP012080.1_Macrhybopsis_gelida_m ...................T................G....................-......-..........T.T.. AP012083.1_Notropis_atherinoides ......T........C...T...............C................C....-...................TG. AP012084.1_Notropis_baileyi_mito ............C..C...T...............C.....................-..........T........TG. AP012087.1_Cyprinella_galactura_ ......T.....CG.C...T...............C.....G..............C-..........T...G....T.. AP012088.1_Hybopsis_lineapunctat ......T..G.C...C...T...............C................A....-...................GG. AP012090.1_Luxilus_cornutus_mito ......T......G.C...T...............C.....................-...................TG. AP012091.1_Lythrurus_ardens_mito ......T......G.C...T...............C.....................-...................TG. AP012092.1_Lythrurus_fumeus_mito .........G.....C...T....T..........C.....................-...................TG. AP012093.1_Lythrurus_lirus_mitoc ......T..G...G.C...T...............C.....................-...................TG. AP012094.1_Lythrurus_umbratilis_ .............G.C...T...............C.....................-...................TG. AP012095.1_Macrhybopsis_meeki_mi ...................T...............C....................C-......-..........T.T.. AP012097.1_Notropis_bifrenatus_m ...............C...T...............C................C....-...................TG. AP012098.1_Pimephales_sp._MCZunc ......T........C...T...............C.....................-...................TG. AP012100.1_Notropis_telescopus_m ......T........C...T...............C.....................-...................TG. AP012101.1_Pimephales_notatus_mi ......T........C...T...............C.....................-...................TG. AP012102.1_Pimephales_vigilax_mi ......T....--..C............T..........................G.-....A.....A.......TT.. AP012103.1_Pogonichthys_macrolep ...........CC......T...................................G......A..............TG. AP012106.1_Richardsonius_balteat ...................T.....G.........G...................G.....................TG. AP012108.1_Notropis_chrosomus_mi ...............C...T...............C.....................-...................TG. AY216542.1_Lythrurus_umbratilus_ ......T..G.....C...T.....G.........C.....................-...................T.. Pimephales_vigilax_R1S2_________ ......T....--..C............T..........................G.-....A.....A.......TT.. Pimephales_vigilax_R1S3_________ ......T....--..C............T..........................G.-....A.....A.......TT.. DQ536429.1_Notropis_stramineus_m ......T..G...T.C...T...............C.....................-...................TG. JX910141.1_Squaliobarbus_curricu ............................................................................-... KC351187.1_Squaliobarbus_curricu ............................................................................-... KT278765.1_Pimephales_promelas_m .........G.....C...T.....G.........C.....................-...................TG. KT289925.1_Pimephales_promelas_m .........G....GC...T.....G.........C.....................-...................TG. KT424924.1_Rhinichthys_osculus_m ......T......G.G...T.....G.............................G.....................T.. KU200257.1_Chanodichthys_ilishae ..............C.........................................C....................... MF972070.1_Siphateles_bicolor_mo .........G.....G.........G....A........................G.....................TG. MG570407.1_Notropis_chalybaeus_v ......T........C...T...............C.....................-...................TG. MG570408.1_Notropis_bifrenatus_v ...............C...T...............C................C....-...................TG. MG570413.1_Notropis_heterolepis_ ............C..C...T.............C.C.....................-...................TG. MG570416.1_Rhinichthys_obtusus_v ......T..G.....G...T...............G...................G.G...................TG. MG570417.1_Rhinichthys_obtusus_v ......T..G.....G...T...............G...................G.G...................TG. MG570420.1_Pimephales_notatus_vo ......T........C...T...............C.....................-...................TG. MG570443.1_Notropis_hudsonius_is ......T..G.C..TC...T...............C.....................-..........T........T.. MG570444.1_Rhinichthys_atratulus ......T..G.....G...T.....G.........G...................G.G...................TG. MG570445.1_Rhinichthys_atratulus ......T..G.....G...T.....G.........G...................G.G...................TG. MG570447.1_Luxilus_cornutus_isol ......T......G.C...T...............C.....................-...................TG. MG570449.1_Luxilus_cornutus_isol ......T......G.C...T...............C.....................-...................TG. MG570450.1_Pimephales_notatus_is ......T........C...T............G..C.....................-...................TG. MG570451.1_Notropis_bifrenatus_i ...............C...T...............C................C....-......-............TG. MG570453.1_Exoglossum_maxillingu ......T..G.........T...............................C...G......A..............T.. MG570454.1_Pimephales_promelas_i .........G.....C...T.....G.........C.....................-...................TG. MG570455.1_Notropis_atherinoides ......T........C...T...............C................C....-...................TG. MG570456.1_Notropis_atherinoides ......T......G.C...T...............C................C....-...................TG. MG570457.1_Pimephales_notatus_is ......T........C...T...............C.....................-...................TG. MG570458.1_Pimephales_notatus_is ......T........C...T...............C.....................-...................TG. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...............C.T.T.....G........CC................A....-...................TG. MT364325.1_Hybognathus_amarus_mi ......T........C...T...............C................A....-.............G.....TG. MT501368.1_Gila_cypha_isolate_SN ...............G.........G....A........................G.....................TG. MT501369.1_Notropis_simus_pecose ...........C..GC...T.....G.........C.....................-...................TG. MT501378.1_Hybognathus_amarus_is ......T........C...T...............C................A....-.............G.....TG. MT501385.1_Notropis_jemezanus_vo ......T......C.C...T...............C.....G...............-..........T........TG. MT501391.1_Rhinichthys_osculus_i ......T......G.G...T...............G.........................................TG. MT667239.1_Rhinichthys_osculus_t ......T......G.G...T...............G.........................................TG. MT667242.1_Luxilus_cornutus_vouc ......T......G.C...T...............C.....................-...................TG. MW300340.1_Hybognathus_placitus_ ...........C.GGC...T...............C................A....-...................TG. MW300341.1_Hybognathus_placitus_ ...........C.GGC...T...............C................A....-...................TG. NC_013763.1_Mylocheilus_caurinus .........G.CC......TA..............G...................G......A......G.......TG. NC_033926.1_Opsopoeodus_emiliae_ ......T........C........A........C..................C....-.....C............-TG. NC_037008.1_Notropis_chalybaeus_ ......T........C...T...............C.....................-...................TG. NC_037009.1_Notropis_heterolepis ............C..C...T.............C.C.....................-...................TG. NC_037010.1_Rhinichthys_obtusus_ ......T..G.....G...T...............G...................G.G...................TG. NC_037014.1_Notropis_hudsonius_i ......T..G.C..TC...T...............C.....................-..........T........T.. NC_037015.1_Exoglossum_maxilling ......T..G.........T...............................C...G......A..............T.. NC_054086.1_Ptychocheilus_lucius .........G..C..G.........G....A.......................GG.....................TG. NC_054257.1_Gila_cypha_isolate_S ...............G.........G....A........................G.....................TG. NC_054259.1_Gila_nigrescens_isol .........G.....G.........G....A........................G.....................TG. NC_054260.1_Hybognathus_amarus_i ......T........C...T...............C................A....-.............G.....TG. NC_054262.1_Notropis_jemezanus_v ......T......C.C...T...............C.....G...............-..........T........TG. Pimephales_notatus_R2S3_________ ......T........C...................C.....................-...................TG. Pimephales_tenellus_tenellu_R2S1 ......T........C.T.T...............C.....................-.....C.............TG. Pimephales_tenellus_parvice_R2S2 ......T........C.T.T...............C.....................-.....C.............TG. Pimephales_notatus_R1S1_________ ......T........C...................C.....................-...................TG. MG570452.1_Pimephales_promelas_i .........G.....C...T.....G.........C.....................-...................TG. MG570452.1_Pimephales_promelas_S .........G.....C...T.....G.........C.....................-...................TG. AB626850.1_Megalobrama_terminali CGCCCGAAATAAGGACATACTGGGGTGGCAGAGCATGGTAAATTGCGAAAGGCCTAAGCCCTTTATACCAGAGGTTCAAA AP010779.1_Mylocheilus_caurinus_ .......G......G........................T........C................A.T............ AP011215.1_Gila_sp._1460_mitocho ..TT.A.G.........................................................A.T...G.......G AP011263.1_Scardinius_erythropht ..T..............................................................A.............. AP011267.1_Algansea_lacustris_mi .A...A.G......G................................T...............ATAC............G AP011268.1_Yuriria_alta_mitochon ...T.A.G......G................................T...............A.A.............. AP011273.1_Hybognathus_nuchalis_ ...T.A.G......G...............................AT...............A.A.............. AP011274.1_Couesius_plumbeus_mit .....T............................G..............................A.....G........ AP011275.1_Platygobio_gracilis_m .....A.GT.....G................................T...............A.A.............G AP011277.1_Erimystax_dissimilis_ .....A.G......G..................................................A.T............ AP011279.1_Pimephales_promelas_m .....A.G......G...............................AT...............A.A.............G AP011280.1_Clinostomus_elongatus .....A........G..................................................A.............G AP012079.1_Luxilus_chrysocephalu .....A.G......G................................T...............A.A.............G AP012080.1_Macrhybopsis_gelida_m .....A.G......G................................T...............A.A.............. AP012083.1_Notropis_atherinoides .....A.G......G................................T...............A.A.............G AP012084.1_Notropis_baileyi_mito .....A.G......G................................T...............A.AG............G AP012087.1_Cyprinella_galactura_ .......G......G...................G...........AT...............A.A.............. AP012088.1_Hybopsis_lineapunctat TA...A.G......G...............................AT...............A.AC............. AP012090.1_Luxilus_cornutus_mito .....A.G......G................................T...............A.A.............. AP012091.1_Lythrurus_ardens_mito ...T.A.G......G................................T...............A.A.............. AP012092.1_Lythrurus_fumeus_mito .....A.G......G................................T...............A.A.............G AP012093.1_Lythrurus_lirus_mitoc ...T.A.G......G................................T...............A.A.............. AP012094.1_Lythrurus_umbratilis_ ...T.A.G......G................................T...............A.A.............. AP012095.1_Macrhybopsis_meeki_mi .....A.G......G...............................AT...............A.A.............. AP012097.1_Notropis_bifrenatus_m .....A.G......G...............................AT...............A.A.............. AP012098.1_Pimephales_sp._MCZunc .....A.G......G...............................AT...............A.A.............. AP012100.1_Notropis_telescopus_m ...T.A.G......G...............................AT...............A.A.............G AP012101.1_Pimephales_notatus_mi .....A.G......G...............................AT...............A.A.............. AP012102.1_Pimephales_vigilax_mi T....A.G......G...............................AT...............A................ AP012103.1_Pogonichthys_macrolep .......G......G........................T.........................A.............. AP012106.1_Richardsonius_balteat .....A.G......G........................T.........................A.....G........ AP012108.1_Notropis_chrosomus_mi .....A.G......G................................T...............A.A.............. AY216542.1_Lythrurus_umbratilus_ ...T.A.G......G..--------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T....A.G......G...............................AT...............A................ Pimephales_vigilax_R1S3_________ T....A.G......G...............................AT...............A................ DQ536429.1_Notropis_stramineus_m .....A.G......G................................T...............A.AG............. JX910141.1_Squaliobarbus_curricu .A...............................................................A.............G KC351187.1_Squaliobarbus_curricu .A...............................................................A.............G KT278765.1_Pimephales_promelas_m .....A.G......G...............................AT...............A.A.............G KT289925.1_Pimephales_promelas_m .....A.G......G...............................AT...............A.A.............G KT424924.1_Rhinichthys_osculus_m .....A.G......G..................................................A.T...........G KU200257.1_Chanodichthys_ilishae .................................................................A.............. MF972070.1_Siphateles_bicolor_mo ..TT.A.G.....A...................................................A.............. MG570407.1_Notropis_chalybaeus_v .....A.G......G................................T...............A.A.............. MG570408.1_Notropis_bifrenatus_v .....A.G......G...............................AT...............A.A.............. MG570413.1_Notropis_heterolepis_ .....A.G......G................................T...............A.AG............. MG570416.1_Rhinichthys_obtusus_v .....A.T.G....G..................................................C.T............ MG570417.1_Rhinichthys_obtusus_v .....A.T.G....G..................................................C.T............ MG570420.1_Pimephales_notatus_vo .....A.G......G...............................AT...............A.A.............. MG570443.1_Notropis_hudsonius_is .....A.G......G...............................AT...............A.A.T...........G MG570444.1_Rhinichthys_atratulus .......T.A....G..................................................AGT............ MG570445.1_Rhinichthys_atratulus .......T.G....G..................................................AGT............ MG570447.1_Luxilus_cornutus_isol .....A.G......G................................T...............A.A.............. MG570449.1_Luxilus_cornutus_isol .....A.G......G................................T...............A.A.............. MG570450.1_Pimephales_notatus_is .....A.G......G...............................AT...............A.A.............. MG570451.1_Notropis_bifrenatus_i .....A.G......G...............................AT...............A.A.............. MG570453.1_Exoglossum_maxillingu .....A.G......G..................................................A.T............ MG570454.1_Pimephales_promelas_i .....A.G......G...............................AT...............A.A.............G MG570455.1_Notropis_atherinoides ...T.A.G......G................................T...............A.A.............. MG570456.1_Notropis_atherinoides ...T.A.G......G................................T...............A.A.............G MG570457.1_Pimephales_notatus_is .....A.G......G...............................AT...............A.A.............. MG570458.1_Pimephales_notatus_is .....A.G......G...............................AT...............A.A.............. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .....A.G......G........................T.......T...............A.A.............. MT364325.1_Hybognathus_amarus_mi ...T.A.G......G...............................AT...............A.A.............. MT501368.1_Gila_cypha_isolate_SN ..TT.A.G.......T.................................................A.............. MT501369.1_Notropis_simus_pecose .....A.G......G...............................AT...............A.A.............G MT501378.1_Hybognathus_amarus_is ...T.A.G......G...............................AT...............A.A.............. MT501385.1_Notropis_jemezanus_vo .....A.G......G................................T...............A.AG............. MT501391.1_Rhinichthys_osculus_i .....A.G......G..................................................A.T...........G MT667239.1_Rhinichthys_osculus_t .....A.G......G..................................................A.T...........G MT667242.1_Luxilus_cornutus_vouc .....A.G......G................................T...............A.A.............. MW300340.1_Hybognathus_placitus_ ...T.A.G......G...................G....T.......T...............A.A.............. MW300341.1_Hybognathus_placitus_ ...T.A.G......G...................G....T.......T...............A.A.............. NC_013763.1_Mylocheilus_caurinus .......G......G........................T........C................A.T............ NC_033926.1_Opsopoeodus_emiliae_ .....A.G......G...........................A...AT....T..........A.A.............. NC_037008.1_Notropis_chalybaeus_ .....A.G......G................................T...............A.A.............. NC_037009.1_Notropis_heterolepis .....A.G......G................................T...............A.AG............. NC_037010.1_Rhinichthys_obtusus_ .....A.T.G....G..................................................C.T............ NC_037014.1_Notropis_hudsonius_i .....A.G......G...............................AT...............A.A.T...........G NC_037015.1_Exoglossum_maxilling .....A.G......G..................................................A.T............ NC_054086.1_Ptychocheilus_lucius ..TT.A.G.........................................................A.T............ NC_054257.1_Gila_cypha_isolate_S ...T.A.G.........................................................A.............. NC_054259.1_Gila_nigrescens_isol ..TT.A.G.........................................................A.T............ NC_054260.1_Hybognathus_amarus_i ...T.A.G......G...............................AT...............A.A.............. NC_054262.1_Notropis_jemezanus_v .....A.G......G................................T...............A.AG............. Pimephales_notatus_R2S3_________ .....A.G......G...............................AT...............A.A.............. Pimephales_tenellus_tenellu_R2S1 .....A.G......G...............................AT...............A.A.............. Pimephales_tenellus_parvice_R2S2 .....A.G......G...............................AT...............A.A.............. Pimephales_notatus_R1S1_________ .....A.G......G...............................AT...............A.A.............. MG570452.1_Pimephales_promelas_i .....A.G......G...............................AT...............A.A.............G MG570452.1_Pimephales_promelas_S .....A.G......G...............................AT...............A.A.............G AB626850.1_Megalobrama_terminali TCCTCTTCCCAGTTCATGCTAAACACTCTAATAAACCACCTAATTAACCCCCTAGCCTATATTGTGCCCGTCCTATTAGC AP010779.1_Mylocheilus_caurinus_ ..............T...........C.......CT.....G........T..C...........C.............. AP011215.1_Gila_sp._1460_mitocho ..............T...........C.......C.......G...G...A..C...............A....G..G.. AP011263.1_Scardinius_erythropht ......C...........................GT.....GG..........C.....C.....T..T........... AP011267.1_Algansea_lacustris_mi ......C.......T.....T.............CT.....G.....T..A..C.....C..C..T......T....... AP011268.1_Yuriria_alta_mitochon ......C.............T.....CT......CT..T..G........A..C...........C.........C.G.. AP011273.1_Hybognathus_nuchalis_ ......C.......T.....T.....CT.G..G.C...T...........G..C...........T.....T........ AP011274.1_Couesius_plumbeus_mit ..................A...............GT.....G...........T.....C........T..T..TC.... AP011275.1_Platygobio_gracilis_m ......C.......T.....G.....CT....G.C...T........T.....C...........C..A.....C..... AP011277.1_Erimystax_dissimilis_ ....................G.....C.......CT...........T.....C........C.....T..T...C.... AP011279.1_Pimephales_promelas_m ......C.......T.....T.....CT.....CTT...........T..A..C...........C..A......C.... AP011280.1_Clinostomus_elongatus ..............T...................G.........C..T.....T.....C.....C...........G.. AP012079.1_Luxilus_chrysocephalu ......C.......T.....T.....CT......C......G...........C.....C.....T...........G.. AP012080.1_Macrhybopsis_gelida_m ......C.............G.....C.......C...TT.............C..T........C..AA.....C.G.. AP012083.1_Notropis_atherinoides ......C.............T.....CT......CT......G.......G..C.....C.....T.........C.G.. AP012084.1_Notropis_baileyi_mito ......C.............T.....CT......T......G........A..C.....C.....T.........C.... AP012087.1_Cyprinella_galactura_ ......C..............G....CT.G....C...............A..C........C..C......T.G..G.. AP012088.1_Hybopsis_lineapunctat ......C.............T.....CT......C...............A..T.....C.....C...A.....C.T.. AP012090.1_Luxilus_cornutus_mito ......C.......T.....T.....CT..G.G.C......G...........C...........T...........G.. AP012091.1_Lythrurus_ardens_mito ......C.............T...G.CT.G....C............T..G..T.........A.C..T..G...C.... AP012092.1_Lythrurus_fumeus_mito ......C.............T.....CT.G....CT......G.......G..T...........C.....GT....... AP012093.1_Lythrurus_lirus_mitoc ......C.......T.....T...G.CT.G..G.C...............A..T...........C.....GT..C.... AP012094.1_Lythrurus_umbratilis_ ......C.............T...G.CT.G....C............T..G..T...........C..T..G...C.... AP012095.1_Macrhybopsis_meeki_mi ......C.............G.....C.......C....T.............C........C..C..AA.....C.G.. AP012097.1_Notropis_bifrenatus_m ......C.T...........T..T..CT......TT......G.......G..C.....C..C..C...........G.. AP012098.1_Pimephales_sp._MCZunc ......C.......T.....T.....CT.G..G.TT.....G........A..C...........C........G..... AP012100.1_Notropis_telescopus_m ......C.............T.....CT.G..G.C....T..........A..C.....C.....C........C..G.. AP012101.1_Pimephales_notatus_mi ......C.......T.....T.....CT.G..G.TT.....G........A..C...........C.....T........ AP012102.1_Pimephales_vigilax_mi ......C.......T...A.TG.T.TCT....T.TT.....G........A..C........CA.C..TA....T..... AP012103.1_Pogonichthys_macrolep ........................G.........C.........C.....A..T.....C..C..C...........G.. AP012106.1_Richardsonius_balteat ......C.......-...................G.......G....T.....T...........C.............. AP012108.1_Notropis_chrosomus_mi ......C.......T.....T.....CT.G..G.C......G........A..C...........C.....G...C.G.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ......C...G...T...A.TG.T.TCT....T.TT.....G........A..C........CA.C..TA....T..... Pimephales_vigilax_R1S3_________ ......C.......T...A.TG.T.TCT....T.TT.....G........A..C........CA.C..TA....T..... DQ536429.1_Notropis_stramineus_m ......C.............T.....CT.G..C.CA..............G..C.....C...............C.G.. JX910141.1_Squaliobarbus_curricu ..............T....................T...T....C..T...........C..C..A........G..... KC351187.1_Squaliobarbus_curricu ..............T....................T...T....C..T...........C..C..A........G..... KT278765.1_Pimephales_promelas_m ......CT......T.....T.....CT.....CTT..............A..C...........C..G......C.... KT289925.1_Pimephales_promelas_m ......C.......T.....T.....CT.....CTT...........T..A..C...........C..G......C.... KT424924.1_Rhinichthys_osculus_m ......C.............G.............CT...........T.....T...........T..T..T...C.... KU200257.1_Chanodichthys_ilishae ..............T.............................C.................C.....T.....GC.... MF972070.1_Siphateles_bicolor_mo ..........................C...G.G.G..................C.................T........ MG570407.1_Notropis_chalybaeus_v ......C.......T.....T.....CT.G..G.CT.....C........A..C..T..................C.G.. MG570408.1_Notropis_bifrenatus_v ......C.T...........T..T..CT......TT......G.......G..C.....C..C..C...........G.. MG570413.1_Notropis_heterolepis_ ......C..T....T.....T.....CT.G..G.C...............A..C...........C...........G.. MG570416.1_Rhinichthys_obtusus_v ......C.............G........G....C..................T........C..C...........G.. MG570417.1_Rhinichthys_obtusus_v ......C.............G........G...GC..................T........C..C...........G.. MG570420.1_Pimephales_notatus_vo ......C.......T.....T.....CT....G.TT.....G........A..C...........C........G..... MG570443.1_Notropis_hudsonius_is ......C.......T.....TG.....T......C...T..C........G..C........C..C..T.....C..... MG570444.1_Rhinichthys_atratulus ......C.............G.....C.......C..................T........CA.C...A.......... MG570445.1_Rhinichthys_atratulus ......C.............G.....C.......C..................T........CA.C...A.......... MG570447.1_Luxilus_cornutus_isol ......C.......T.....T.....CT..G.G.C......G...........C...........C...........G.. MG570449.1_Luxilus_cornutus_isol ......C.......T.....T.....CT..G.G.C......G...........C...........C...........G.. MG570450.1_Pimephales_notatus_is ......C.......T.....T.....CT....G.TT.....G........A..C...........C........G..... MG570451.1_Notropis_bifrenatus_i ......C.T...........T..T..CT......TT......G.......G..C.....C..C..C...........G.. MG570453.1_Exoglossum_maxillingu ....................G.....C.......CT...........T.....C........C.....T..T...C.... MG570454.1_Pimephales_promelas_i ......C.......T.....T.....CT.....CTT...........T..A..C...........C..G......C.... MG570455.1_Notropis_atherinoides ......C.............T.....CT......CT......G.......G..C.....C.....T.........C.G.. MG570456.1_Notropis_atherinoides ......C.............T.....CT......CT......G.......G..C.....C.....T.........C.G.. MG570457.1_Pimephales_notatus_is ......C.......T.....T.....CT.G..G.TT.....G........A..C...........C........G..... MG570458.1_Pimephales_notatus_is ......C.......T.....T.....CT.G..G.TT.....G........A..C...........C........G..... MK421554.1_Parabramis_pekinensis ...............................................T...........................C.... MT333789.1_Notropis_lutipinnis_v ......C.............T.....CT......CT..T...........AT.............C...A..T.GC.... MT364325.1_Hybognathus_amarus_mi ......C.......T.....T.....CT.G..G.C...T...........G..C.....C.....T.............. MT501368.1_Gila_cypha_isolate_SN ..............T...........C.......G............T.....C........C................. MT501369.1_Notropis_simus_pecose ......C.......T.....T.....AT.G..G.C...............A.....T........C.....TT....G.. MT501378.1_Hybognathus_amarus_is ......C.......T.....T.....CT.G..G.C...T.....C.....G..C.....C.....T.............. MT501385.1_Notropis_jemezanus_vo ......C.............T.....CT....G.CT..T..GG.......A..C.....C.....T.........C.G.. MT501391.1_Rhinichthys_osculus_i ......C.............G.............C......GG..........T...........C..TA.T..GC.G.. MT667239.1_Rhinichthys_osculus_t ......C.............G.............C......GG..........T...........C..TA.T..GC.G.. MT667242.1_Luxilus_cornutus_vouc ......C.......T.....T.....CT..G.G.C......G...........C...........C...........G.. MW300340.1_Hybognathus_placitus_ ......C.......T.....T.....CT.G..G.C...............A..C...........T..T..T.....G.. MW300341.1_Hybognathus_placitus_ ......C.......T.....T.....CT.G..G.C...............A..C...........T..T..T.....G.. NC_013763.1_Mylocheilus_caurinus ..............T...........C.......CT.....G........T..C...........C.............. NC_033926.1_Opsopoeodus_emiliae_ ......C.............TC....CT....TGTT..T..T.....T.....C.........A.C..TA.TT....... NC_037008.1_Notropis_chalybaeus_ ......C.......T.....T.....CT.G..G.CT.....C........A..C..T..................C.G.. NC_037009.1_Notropis_heterolepis ......C..T....T.....T.....CT.G..G.C...............A..C...........C...........G.. NC_037010.1_Rhinichthys_obtusus_ ......C.............G........G....C..................T........C..C...........G.. NC_037014.1_Notropis_hudsonius_i ......C.......T.....TG.....T......C...T..C........G..C........C..C..T.....C..... NC_037015.1_Exoglossum_maxilling ....................G.....C.......CT...........T.....C........C.....T..T...C.... NC_054086.1_Ptychocheilus_lucius ..............T...........C.......G......G........G..C........C................. NC_054257.1_Gila_cypha_isolate_S ..............T...........C.......G............T.....C........C............C.... NC_054259.1_Gila_nigrescens_isol ..............T...........CT......C............T..G..C.......................... NC_054260.1_Hybognathus_amarus_i ......C.......T.....T.....CT.G..G.C...T...........G..C.....C.....T.............. NC_054262.1_Notropis_jemezanus_v ......C.............T.....CT....G.CT.....GG.......A..C.....C.....T.........C.G.. Pimephales_notatus_R2S3_________ ......C.......T.....T.....CT.G..G.TT.....G..C..T..A..C...........C........G..... Pimephales_tenellus_tenellu_R2S1 ......C.......T.....T.....CT.T...GTT.....G........A..C.....C........T..T...C.... Pimephales_tenellus_parvice_R2S2 ......C.......T.....T.....CT.T...GTT...T.G........A..C.....C........T..T...C.... Pimephales_notatus_R1S1_________ ......C.......T.....T.....CT.G..G.TT.....G..C..T..A..C...........C........G..... MG570452.1_Pimephales_promelas_i ......C.......T.....T.....CT.....CTT...........T..A..C...........C..G......C.... MG570452.1_Pimephales_promelas_S ......C.......T.....T.....CT.....CTT...........T..A..C...........C..A......C.... AB626850.1_Megalobrama_terminali AGTAGCCTTCCTAACTCTAATCGAGCGTAAAGTATTAGGATATATACAACTACGAAAGGGGCCAAATGTAGTCGGACCAT AP010779.1_Mylocheilus_caurinus_ G..G...........C..GC....A..G..G..GC.T..G.....G.....G..G.....A..T........A.....T. AP011215.1_Gila_sp._1460_mitocho C..............C..TC.G.....A..G..G........C......T.G..C.....C..T.....G........T. AP011263.1_Scardinius_erythropht C..............C..TC.T..A..A.................G.....G..G..A..A..T..............T. AP011267.1_Algansea_lacustris_mi T.....A........CT..C.A..A..A..G...C....G...........T..G..A.....T.....G..T..G..T. AP011268.1_Yuriria_alta_mitochon C..G..G...T....AT.GC.T..A..A..............C........G.....A..A..C........A.....C. AP011273.1_Hybognathus_nuchalis_ T..G..A...T....CT..C.T..A..A......C....C.....G..G..G.....A..A..C.....G........C. AP011274.1_Couesius_plumbeus_mit ...G........G..C..CC.T.....G..G...C....T.....G........G.....C........C..A..G..C. AP011275.1_Platygobio_gracilis_m ..........T.G..CT.GC....A..G.....GC.T..G.....G..G..............T.....G..A..G..T. AP011277.1_Erimystax_dissimilis_ C.....T........CT..C....A..G.......................G..T..A..A..C.....G..T..C..T. AP011279.1_Pimephales_promelas_m ...G..A...T....C..GC.T..A..G........G..............G.....A..A..T.....G..A....... AP011280.1_Clinostomus_elongatus G..............C...C....A..G..G........G.....G...........A..A..C........A.....C. AP012079.1_Luxilus_chrysocephalu C..G..A...T.G..C..GG.T..A..A..G........G.....G.....G........A..C.....G..G..G..C. AP012080.1_Macrhybopsis_gelida_m ..........T....C...C.A..A..A.....................T.G.....A..A..T........A.....T. AP012083.1_Notropis_atherinoides C..G..A..TT.G...T.GC.T..A..A..G.....G........G..G........A..A..T..C.....A.....T. AP012084.1_Notropis_baileyi_mito C..G..A..TT....CT.GC.......A..G..G...........G...T.......A..A..T.....G..T.....T. AP012087.1_Cyprinella_galactura_ C..G..A...T.G..C...C.T.....G..G..G.....G.........T.C..G.....A..T..C.....A..G..C. AP012088.1_Hybopsis_lineapunctat C.....A.....G..CT..G.T..A..A.....G..G..T.........T.......A..A..T........A.....C. AP012090.1_Luxilus_cornutus_mito C.....A...T....CT..C.T..A..A..............C..G.....G..G........T.....G..A..G..C. AP012091.1_Lythrurus_ardens_mito C.....G..TT.G..C..GC.T.....A..G..................T.............C........T.....C. AP012092.1_Lythrurus_fumeus_mito C..G..A...T....CT.GC.T.....A.....GC....T.....G...T.......A.....C...........G..C. AP012093.1_Lythrurus_lirus_mitoc C.....A..TT....C..GC.T.....A..G...........C.....GT.G...........C..............T. AP012094.1_Lythrurus_umbratilis_ C.....G..TT.G..C..GC.T.....A..G...........C......T.............C........T.....C. AP012095.1_Macrhybopsis_meeki_mi ..........T....CT..C.A..A..A...........G..C......T.G.....A.....T........A.....T. AP012097.1_Notropis_bifrenatus_m T.....A...T....AT..C.T..A..A.................G...T.G.....A..A..T.....G..A.....C. AP012098.1_Pimephales_sp._MCZunc G..G..A...T....CT..G.T.....A..............C..............A..A..T........A.....C. AP012100.1_Notropis_telescopus_m C..G..A...T.....T..C.......G.....GC..........G...T....G..A..A..C.....G..G..G..C. AP012101.1_Pimephales_notatus_mi G..G..A...T....CT..G.T.....A..............C..............A..A..T........A.....C. AP012102.1_Pimephales_vigilax_mi ...G..A...T....C...C.T..A..A.......................G.....A..A..T........G.....C. AP012103.1_Pogonichthys_macrolep ...............C...C.T..A..A.....GC.T........G..G........A..A..T..C.....A.....T. AP012106.1_Richardsonius_balteat ...............C..GC.......A...........G..C..G........G..A.....C.....G..G..G..C. AP012108.1_Notropis_chrosomus_mi C..G..A...T.G..CT..G.T.....A..G..............G.....G........A..T........A.....C. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...G..A...T....C...C.T..A..A.......................G.....A..A..T........G.....C. Pimephales_vigilax_R1S3_________ ...G..A...T....C...C.T..A..A.......................G.....A..A..T........G.....C. DQ536429.1_Notropis_stramineus_m C..G......T.G..CT..C.T..A..G..G..GC....C..C..G..GT.G.....A..C..G........G.....C. JX910141.1_Squaliobarbus_curricu ...G..T.........T..G....A....................G...........A.....T..C.....A.....G. KC351187.1_Squaliobarbus_curricu ...G..T.........T..G....A....................G...........A.....T..C.....A.....G. KT278765.1_Pimephales_promelas_m G..G..A...T....C..GC.T..A..G.......................G.....A..A..T.....G..A....... KT289925.1_Pimephales_promelas_m ...G..A...T....C..GC.T..A..G..............C........G..G..A..A..T.....G..A....... KT424924.1_Rhinichthys_osculus_m C..............CT..C.T..A..A......C....G.....G..G..G........A..T........T.....C. KU200257.1_Chanodichthys_ilishae ........................A................................A..A........G.......... MF972070.1_Siphateles_bicolor_mo C..G..T........C..CC.T.....G..G........G.....G..G.....C..A.....T.....T..T.....T. MG570407.1_Notropis_chalybaeus_v C..G..A..TT....CT..C.T.....A......C..........G...T.......A.....C........A.....C. MG570408.1_Notropis_bifrenatus_v T.....A...T....AT..C.T..A..A.................G...T.G.....A..A..T.....G..A.....C. MG570413.1_Notropis_heterolepis_ C..G..A...T.......TG.T..A..A..G..............G...........A..A..T........G..C..C. MG570416.1_Rhinichthys_obtusus_v C..............CT.GC.T.....A......C..........G..G.....G.....C..T........T.....C. MG570417.1_Rhinichthys_obtusus_v C..............CT.GC.T.....A......C..........G..G.....G.....C..T........T.....C. MG570420.1_Pimephales_notatus_vo G..G..A...T....CT..G.T.....A.............................A..A..T........A.....C. MG570443.1_Notropis_hudsonius_is C.....A..TT.G..CT.GC....A..A...........C...........C..T.....A..T........A..G..T. MG570444.1_Rhinichthys_atratulus C..G........G..CT..C.T..A..A......C.......C..G.....G.....A..C..T........T.....C. MG570445.1_Rhinichthys_atratulus C..G........G..CT..C.T..A..A..G...C.......C..G.....G.....A..C..T........T.....C. MG570447.1_Luxilus_cornutus_isol C.....A...T....CT..C.T..A..A..............C..G.....G..G.....A..T.....G..A..G..C. MG570449.1_Luxilus_cornutus_isol C.....A...T....CT..C.T..A..A..............C..G.....G..G.....A..T.....G..A..G..C. MG570450.1_Pimephales_notatus_is G..G..A...T....CT..G.T.....A.............................A..A..T........A.....C. MG570451.1_Notropis_bifrenatus_i T.....A...T....AT..C.T..A..A.................G...T.G.....A..A..T.....G..A.....C. MG570453.1_Exoglossum_maxillingu C.....T........CT..C....A..G.......................G..T..A..A..C.....G..T..C..T. MG570454.1_Pimephales_promelas_i ...G..A...T....C..GC.T..A..G..............C........G..G..A..A..T.....G..A....... MG570455.1_Notropis_atherinoides C..G..A..TT.G...T.GC.T.....A..G.....G........G..G........A........C..G..A.....T. MG570456.1_Notropis_atherinoides C..G..A..TT.G...T.GC.T.....A..G.....G........G..G........A..A..T..C.....A.....T. MG570457.1_Pimephales_notatus_is G..G..A...T....CT..G.T.....A..............C..............A..A..T........A.....C. MG570458.1_Pimephales_notatus_is G..G..A...T....CT..G.T.....A..............C..............A..A..T........A.....C. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v C.....A...T....CT..C.T..A..A..G..............G..............A..T........A.....C. MT364325.1_Hybognathus_amarus_mi T..G..A...T....CT..C.T..A..A......C....C.....G.....G.....A..A..T.....G........C. MT501368.1_Gila_cypha_isolate_SN C..............C..TC.G.....A..G..............G........C..A..C..T.....G........T. MT501369.1_Notropis_simus_pecose ...G..A...T.G..CT..G.T.....A..G...C....G..C..G.....G..G..A..A..T........G..G..C. MT501378.1_Hybognathus_amarus_is T..G..A...T....CT..C.T..A..A......C....C.....G.....G.....A..A..T.....G........C. MT501385.1_Notropis_jemezanus_vo C..G..G..TT.G...T..C.T.....A..G.....G..C..C.....G........A.....T..C..G..A..G..T. MT501391.1_Rhinichthys_osculus_i C..G...........CT..C.T.....G...........G.....G..G..G...........T.....G..T.....C. MT667239.1_Rhinichthys_osculus_t C..G...........CT..C.T.....G...........G.....G.....G.....A.....T.....G..T.....C. MT667242.1_Luxilus_cornutus_vouc C.....A...T....CT..C.T..A..A..............C..G.....G..G.....A..T.....G..A..G..C. MW300340.1_Hybognathus_placitus_ C..G..A...T....CT..C.T..A.....G..GC.G..C..C..G..G..G..G.....A..T..............C. MW300341.1_Hybognathus_placitus_ C..G..A...T....CT..C.T..A.....G..GC.G..C..C..G..G..G..G.....A..T..............C. NC_013763.1_Mylocheilus_caurinus G..G...........C..GC....A..G..G..GC.T..G.....G.....G..G.....A..T........A.....T. NC_033926.1_Opsopoeodus_emiliae_ ...G..A...T....C...C.T..A..A...........C.................A.....T.....T..A.....C. NC_037008.1_Notropis_chalybaeus_ C..G..A..TT....CT..C.T.....A......C..........G...T.......A.....C........A.....C. NC_037009.1_Notropis_heterolepis C..G..A...T.......TG.T..A..A..G..............G...........A..A..T........G..C..C. NC_037010.1_Rhinichthys_obtusus_ C..............CT.GC.T.....A......C..........G..G.....G.....C..T........T.....C. NC_037014.1_Notropis_hudsonius_i C.....A..TT.G..CT.GC....A..A...........C...........C..T.....A..T........A..G..T. NC_037015.1_Exoglossum_maxilling C.....T........CT..C....A..G.......................G..T..A..A..C.....G..T..C..T. NC_054086.1_Ptychocheilus_lucius C..............C..TC.A.....A..G..................T....C.....C..T.....G..A.....C. NC_054257.1_Gila_cypha_isolate_S C..............C..TC.G.....A..G..............G........C..A..C..T.....G........T. NC_054259.1_Gila_nigrescens_isol C..G...........C..TC.A.....A.....G.....G.........T....C..A..C..T..............T. NC_054260.1_Hybognathus_amarus_i T..G..A...T....CT..C.T..A..A......C....C.....G.....G.....A..A..T.....G........C. NC_054262.1_Notropis_jemezanus_v C..G..G..TT.G...T..C.T.....A..G........C..C.....G........A.....T..C..G..A..G..T. Pimephales_notatus_R2S3_________ G..G..A...T....C...G.T.....A...........G..C......T.......A..A..T........A..G..C. Pimephales_tenellus_tenellu_R2S1 ......A...T........C.T..A..............G.....G...T.......A..A..T........A.....C. Pimephales_tenellus_parvice_R2S2 ......A...T........C.T..A....................G...T.......A..A..T........A.....C. Pimephales_notatus_R1S1_________ G..G..A...T....C...G.T.....A...........G..C......T.......A..A..T........A..G..C. MG570452.1_Pimephales_promelas_i ...G..A...T....C..GC.T..A..G..............C........G..G..A..A..T.....G..A....... MG570452.1_Pimephales_promelas_S ...G..A...T....C..GC.T..A..G........G..............G.....A..A..T.....G..A....... AB626850.1_Megalobrama_terminali ACGGACTTTTACAGCCCATCGCTGATGGAGTAAAACTATTTATTAAAGAACCAGTCCGCCCCTCTACATCCTCCCCATTC AP010779.1_Mylocheilus_caurinus_ .....T.AC....A..T.....C.....G..C..G.....C..C.....G..C...........C..C..A.....C... AP011215.1_Gila_sp._1460_mitocho .T..C..A.....A..T..T..C......T................G..G..CA.............T........C... AP011263.1_Scardinius_erythropht .T..T..AC.G..A..T..............C..GT.............G..C........T..C..C..A.....C... AP011267.1_Algansea_lacustris_mi .....T.AC....A..T.....C..C..G..T...T.............G..C...........C.....G.....T... AP011268.1_Yuriria_alta_mitochon .T...T.AC....A..T.....C.....G..T..GT..........G.....C........A........A......... AP011273.1_Hybognathus_nuchalis_ .T..TT.AC.T..A..T.....C..C..G..T..G..G........G..G..C........A..C..G..A........T AP011274.1_Couesius_plumbeus_mit .....T.GC....A..T.....C..C...T.G..GT.G..............C........T.....C..A..T..C... AP011275.1_Platygobio_gracilis_m .......A.....A..T.....C..C..G..C.....G...........G..T...........C.....A.....C... AP011277.1_Erimystax_dissimilis_ ....GT.GC....A..T..T..A.....G......T....C..C........C..G........C..C..A.....C... AP011279.1_Pimephales_promelas_m .T..TT.A..G..A..T..T..C..C.....T..GT.G........G.....T..T........C..............T AP011280.1_Clinostomus_elongatus .....T.A.....A..T.....C..C...........G...........G..C...........C..C..A..T..C... AP012079.1_Luxilus_chrysocephalu .T..TT.AC.G..A..T..T..C..C..GA.C...T.G...........G..C..T.....T..C.....A.....C... AP012080.1_Macrhybopsis_gelida_m .......AC....A..T..T.....C.....C.....T...........G..C...........C.....A.....C... AP012083.1_Notropis_atherinoides .T..C..AC.............C..C........G..G..............C..T.....A..C.....G......... AP012084.1_Notropis_baileyi_mito ....C..AC.T..A........C.....G..T..GT..........G.....G........A........G........T AP012087.1_Cyprinella_galactura_ ....CT.GC.G...................................G..G..C..T........C..G..A......... AP012088.1_Hybopsis_lineapunctat .T..TT.AC.T..A..T.....C........T...T.............G..C..T.....G........A......... AP012090.1_Luxilus_cornutus_mito .T..TT.G..G..A..T.....C..C..G..C....................C..T.....T..C...........C... AP012091.1_Lythrurus_ardens_mito ....TT.GC.G..A..T.....C.....G..T..GT.G........G.....C..T.....G..C...........G... AP012092.1_Lythrurus_fumeus_mito ....TT.AC.G..A..T.....C..C.....T..GT....C.....G.....C..T.....A..C.....A.....C..T AP012093.1_Lythrurus_lirus_mitoc ....TT.GC.G.....T.....C.....G..T..GT.G..............C..T.....A..C........A..G... AP012094.1_Lythrurus_umbratilis_ ....TT.GC.G..A..T.....C.....G..T..GT.G........G.....C..T.....G..C...........G... AP012095.1_Macrhybopsis_meeki_mi .....T.A.....A.....T.....C.....T.....T.....C........C...........C.....A.....C... AP012097.1_Notropis_bifrenatus_m .T..T..GC....A..T..T..C.....G..T..GT................C..T.....A..C........A...... AP012098.1_Pimephales_sp._MCZunc .T..CT.AC.G..A..T.....C.....G..T..GT.G.....C........C..T........C..............T AP012100.1_Notropis_telescopus_m .T..C..AC.G..A.....T..C.....G..T..GT.............G..C........A..C.....A......... AP012101.1_Pimephales_notatus_mi .T..CT.AC.G..A..T.....C.....G..T..GT.G..............C..T..T.....C..............T AP012102.1_Pimephales_vigilax_mi .T..TT.AC.T..A..T...........G..T...T................C.....T.....C........T.....T AP012103.1_Pogonichthys_macrolep .....T.AC....A..T..T..C........C..G........C..G..G..C...........C..C..A.....C... AP012106.1_Richardsonius_balteat ....GT.A.....A..T.....C..C...........G........G..G..C...........C..C........C... AP012108.1_Notropis_chrosomus_mi .T..TT.AC.T..A..T.....C........C..G.....C........G..CA.......G........A......... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .T..TT.AC.T..A..T...........G..T...T................C.....T.....C........T.....T Pimephales_vigilax_R1S3_________ .T..TT.AC.T..A..T...........G..T...T................C.....T.....C........T.....T DQ536429.1_Notropis_stramineus_m ....TT.AC.G..A..T........C.....T..GT....C.....G..G..C..T.....G..C.....A......... JX910141.1_Squaliobarbus_curricu .......CC....A..T.....C..C.........T.......C.....G..C...........C...........C..T KC351187.1_Squaliobarbus_curricu .......CC....A..T.....C..C.........T.......C.....G..C...........C...........C..T KT278765.1_Pimephales_promelas_m .T..TT.G.....A..T..T..C..C.....T..GT.G........G.....T..T........C..............T KT289925.1_Pimephales_promelas_m .T..TT.A..G..A..T..T..C..C.....T..GT.G..............T..T........C..............T KT424924.1_Rhinichthys_osculus_m .....T.AC.G..A..T.....C..C..T.....GT.............G..C...........C..C........C... KU200257.1_Chanodichthys_ilishae .T.....CC....A..T.....C..C.........T.......C..............T...........T..T..G... MF972070.1_Siphateles_bicolor_mo .T...T.A..G..A..T.....C.....GT.......G..C.....G.....CA.............T........C... MG570407.1_Notropis_chalybaeus_v ....CT.AC.T..A..T.....C.....G..T..GT................T.....T...........A........T MG570408.1_Notropis_bifrenatus_v .T..T..GC....A..T..T..C.....G..T..GT................C..T.....A..C........A...... MG570413.1_Notropis_heterolepis_ .T..T..A..G..A..T.....C..C..G..T...T................T..T..T..T..C.....A......... MG570416.1_Rhinichthys_obtusus_v .T..GT.GC.G..A..T.....C.....G.....GT....C..C.....G..C.....T.....C..C..A.....C... MG570417.1_Rhinichthys_obtusus_v .T..GT.GC.G..A..T.....C.....G.....GT....C..C.....G..C.....T.....C..C..A.....C... MG570420.1_Pimephales_notatus_vo .T..CT.AC.G..A..T.....C.....G..T..GT.G.....C........C..T........C..............T MG570443.1_Notropis_hudsonius_is .T...T.A.....A..A.....C..C..GA.T..GT.G.....C.....G..T..T........C.....A.....C... MG570444.1_Rhinichthys_atratulus .T..TT.AC....A..T........C..G..G..GT......CC.....G..C...........C..C..G.....C... MG570445.1_Rhinichthys_atratulus .T..TT.AC....A..T........C..G..G..GT......CC.....G..C...........C..C..G.....C... MG570447.1_Luxilus_cornutus_isol .T..TT.G..G..A..T.....C..C..G..C....................C..T.....T..C...........C... MG570449.1_Luxilus_cornutus_isol ....TT.G..G..A..T.....C..C..G..C....................C..T.....T..C...........C... MG570450.1_Pimephales_notatus_is .T..CT.AC.G..A..T.....C.....G..T..GT.G.....C........C..T........C..............T MG570451.1_Notropis_bifrenatus_i .T..T..GC....A..T..T..C.....G..T..GT................T..T.....A..C........A...... MG570453.1_Exoglossum_maxillingu ....GT.GC....A..T..T..A.....G......T....C..C........C..G........C..C..A.....C... MG570454.1_Pimephales_promelas_i .T..TT.A..G..A..T..T..C..C.....T..GT.G..............T..T........C..............T MG570455.1_Notropis_atherinoides .T..C..AC.G...........C..C.....T..G..G...........G..C..T.....A..C.....G.....G... MG570456.1_Notropis_atherinoides .T..C..AC.............C..C........G..G..............C..T.....A..C.....G......... MG570457.1_Pimephales_notatus_is .T..CT.AC.G..A..T.....C.....G..T..GT.G.....C........C..T........C..............T MG570458.1_Pimephales_notatus_is .T..CT.AC.G..A..T.....C.....G..T..GT.G.....C........C..T........C..............T MK421554.1_Parabramis_pekinensis ...............................................................................T MT333789.1_Notropis_lutipinnis_v .T..T..AC.T..A..T...........G..T.................G..C........A........A........T MT364325.1_Hybognathus_amarus_mi .T..TT.AC.T..A..T.....C..C..G..T..G..G........G..G..C........A..C.....A......... MT501368.1_Gila_cypha_isolate_SN .T..C..G.....A..T.....C.....GT......................CA.............T........C... MT501369.1_Notropis_simus_pecose ....CT.AC.T..A........C.....G..T..G...........G.....C..T.....G........T......... MT501378.1_Hybognathus_amarus_is .T..TT.AC.T..A..T.....C..C..G..T..G..G........G..G..C........A..C.....A......... MT501385.1_Notropis_jemezanus_vo .T..C..GC.G.....T........C.....T..G..C...........G..C..T.....G..C.....G......... MT501391.1_Rhinichthys_osculus_i ....GT.AC....A..T........C..C.....GT.G..C........G..C...........C..T........C... MT667239.1_Rhinichthys_osculus_t ....GT.AC....A..T........C..C.....GT.G..C........G..C...........C..T........C... MT667242.1_Luxilus_cornutus_vouc .T..TT.G..G..A..T.....C..C..G..C....................C..T.....T..C...........C... MW300340.1_Hybognathus_placitus_ ....T..GC.T..A..T.....C........T..............G........T.....G..A..............T MW300341.1_Hybognathus_placitus_ ....T..GC.T..A..T.....C.....G..T..............G........T.....G..A..............T NC_013763.1_Mylocheilus_caurinus .....T.AC....A..T.....C.....G..C..G.....C..C.....G..C...........C..C..A.....C... NC_033926.1_Opsopoeodus_emiliae_ .T..CT.AC....A..T.....C..C..TA.T..GT.............G..CA.T........C..C..T........T NC_037008.1_Notropis_chalybaeus_ ....CT.AC.T..A..T.....C.....G..T..GT................T.....T...........A........T NC_037009.1_Notropis_heterolepis .T..T..A..G..A..T.....C..C..G..T...T................T..T..T..T..C.....A......... NC_037010.1_Rhinichthys_obtusus_ .T..GT.GC.G..A..T.....C.....G.....GT....C..C.....G..C.....T.....C..C..A.....C... NC_037014.1_Notropis_hudsonius_i .T...T.A.....A..A.....C..C..GA.T..GT.G.....C.....G..T..T........C.....A.....C... NC_037015.1_Exoglossum_maxilling ....GT.GC....A..T..T..A.....G......T....C..C........C..G........C..C..A.....C... NC_054086.1_Ptychocheilus_lucius ....G..A.....A..T..T..C.....GT......................CA.............T........T... NC_054257.1_Gila_cypha_isolate_S .T..C..G.....A..T.....C.....GT......................CA.............T........C... NC_054259.1_Gila_nigrescens_isol .T..C..A.....A..T..T..C......T......................CA.............T........C... NC_054260.1_Hybognathus_amarus_i .T..TT.AC.T..A..T.....C..C..G..T..G..G........G..G..C........A..C.....A......... NC_054262.1_Notropis_jemezanus_v .T..C..AC.G.....T........C.....T..G..C...........G..C..T.....A..C.....G......... Pimephales_notatus_R2S3_________ .T..TT.A.....A..T.....C........T..GT.......C.....G..C..T........C..............T Pimephales_tenellus_tenellu_R2S1 .T..TT.AC....A..T..............T..GT................T..T........C.....A......... Pimephales_tenellus_parvice_R2S2 .T..TT.AC....A..T.....C........T..GT................T..T........C.....A......... Pimephales_notatus_R1S1_________ .T..TT.A.....A..T.....C........T..GT.......C.....G..C..T........C..............T MG570452.1_Pimephales_promelas_i .T..TT.A..G..A..T..T..C..C.....T..GT.G..............T..T........C..............T MG570452.1_Pimephales_promelas_S .T..TT.A..G..A..T..T..C..C.....T..GT.G........G.....T..T........C..............T AB626850.1_Megalobrama_terminali CTATTTCTAGCCGCCCCCATTCTTGCACTAACTCTAGCCATAACACTATGAGCACCCATACCCATGCCCTATCCAGTAGT AP010779.1_Mylocheilus_caurinus_ ..C...T....AA....T.........T.G..C..G.....G.......................A.....C..C...A. AP011215.1_Gila_sp._1460_mitocho ......T....TA...................C........G..CT.............G........T..C..CA.C.. AP011263.1_Scardinius_erythropht ..C..C..C..AA....T..............C........G........G......C..........T..C..T..... AP011267.1_Algansea_lacustris_mi T.G..CT....AA....A..C...........C..C...C.C..C..T...........C........TC.C.....CA. AP011268.1_Yuriria_alta_mitochon T..........AA....T..C...........C..C...C.T..T..T........T..C..T..A..TC.C......A. AP011273.1_Hybognathus_nuchalis_ .....CT....AA....T..............C..T..TC.C..C..C.....T..T..C..T..A..TC.C.....CA. AP011274.1_Couesius_plumbeus_mit T.....T....AA....T..C.....G..G..C..C..T..G...T.G.....C...C.C..............T..T.. AP011275.1_Platygobio_gracilis_m T.G...T.G..A.....T........G..G..C..T...C....C..T..G..................C.C.....CA. AP011277.1_Erimystax_dissimilis_ T.....T....AA....T..............G..T...T.G..C..C...........C..T..A..TC.C..C..CA. AP011279.1_Pimephales_promelas_m T....C.....AA....T..............C..T..TC.T..C..T.....C..T.....T..A...C.C.....CA. AP011280.1_Clinostomus_elongatus ..C...T....GA....T..............C..C........G......T.............A........C...A. AP012079.1_Luxilus_chrysocephalu T.G.....G..AA....T..C........G..C..T...C.T..C..T...........G..T......C.C.....CA. AP012080.1_Macrhybopsis_gelida_m ......T....A.....T..C......T....C..T...T....C..T..............T.....T.........A. AP012083.1_Notropis_atherinoides T.....T....GA.............G.....C..T...C....T..T...........C..T.....TC.C.....CA. AP012084.1_Notropis_baileyi_mito T.G...T....AA....T..C......T....C..T...C.C..C..T...........C.....A..T.....G..CA. AP012087.1_Cyprinella_galactura_ ........T..GA....T..C........C..C..T..GC.T..C..T........T.....T......C.C.....CA. AP012088.1_Hybopsis_lineapunctat T....CT....A.....T..C......T.......T...C.T..C..T.....C..T.....T.....TC.C.....CA. AP012090.1_Luxilus_cornutus_mito T....C..G..AA....T...........G..C..T...C.C..C..T..G...........T..A..TC.C.....CA. AP012091.1_Lythrurus_ardens_mito T.G.........A....T..C........T..C..T..TC.C..T..T..............T..A..TC.C......A. AP012092.1_Lythrurus_fumeus_mito T..........TA.......C........C..C..T...T....T..T.....G..T..C..A..A..TC.C........ AP012093.1_Lythrurus_lirus_mitoc T.G.........A....T..C........C..C..T..TC.C..T..T........T.....T..A..TC.C.....CA. AP012094.1_Lythrurus_umbratilis_ T.G.....G...A....T..C........T..C..T..TC.C..T..T..............T..A..TC.C.....CA. AP012095.1_Macrhybopsis_meeki_mi ......T....A.....T..C........T..C..C...T....C..T........T.....T.....T..C......A. AP012097.1_Notropis_bifrenatus_m T..........AA....T...........T..C..C...C.C..T..C........T.....T..A..TC.C.....TA. AP012098.1_Pimephales_sp._MCZunc T....C.....AA....T.........T....C..T..TC....T..T.....C.....G..T......C.......CA. AP012100.1_Notropis_telescopus_m T..........AA.......C...........C..T..TC.T..C..T.....C..T..C..T..A..TC.C..C..TA. AP012101.1_Pimephales_notatus_mi T..........AA....T.........T....C..T..TC....T..T.....G.....G..T......C.......CA. AP012102.1_Pimephales_vigilax_mi T.......C..AA....T.........T.G..C......C.C..C..T.....C..A.....T..A...C.C...A.CA. AP012103.1_Pogonichthys_macrolep ..C...T....AA..............T....C..C.....GG.......G....................C..C...A. AP012106.1_Richardsonius_balteat ......T....AA................G..C........G..C..G.................A...C.C..C..CA. AP012108.1_Notropis_chrosomus_mi T.....T....AA.......C..C........C..T...C.C..C..C........T..C.....A...C.C.....CA. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T.......C..AA....T.........T.G..C......C.C..C..T.....C..A.....T..A...C.C...A.CA. Pimephales_vigilax_R1S3_________ T.......C..AA....T.........T.G..C......C.C..C..T.....C..A.....T..A...C.C...A.CA. DQ536429.1_Notropis_stramineus_m T....CT.G..AA.T............T....C..G..TC.C..C..C.....C..T..C..T......C.C......A. JX910141.1_Squaliobarbus_curricu .....C......A...................C..G.............................A..T..C........ KC351187.1_Squaliobarbus_curricu .....C......A...................C..G.............................A..T..C........ KT278765.1_Pimephales_promelas_m T....C.....AA....T..............C..T..TC.T..C..T.....C..T.....T......C.C.....TA. KT289925.1_Pimephales_promelas_m T....C.....AA....T..............C..T..TC.T..C..T.....C..T.....T..A...C.C.....CA. KT424924.1_Rhinichthys_osculus_m ..C...T...TAA.............G.....C......C.G..C.................T..A...C.C..C..GA. KU200257.1_Chanodichthys_ilishae T....CT.....A.......C..C...T....C..G........T....................A.....C........ MF972070.1_Siphateles_bicolor_mo .....CT.....A...................C........G..G..............G.....A.....C..C...A. MG570407.1_Notropis_chalybaeus_v T....CT....AA.......C..C........C..T...C.T..C..T........T..T..T..A..TC.......CA. MG570408.1_Notropis_bifrenatus_v T..........AA....T...........T..C..C...C.C..T..C........T.....T..A..TC.C.....TA. MG570413.1_Notropis_heterolepis_ T..........AA....T..C..C........C..C...C.C..T..T........T........A..TC.C......A. MG570416.1_Rhinichthys_obtusus_v T.....T.G..AA....T.................G...T....C.....G..G.....G.....A..TC.C..C...A. MG570417.1_Rhinichthys_obtusus_v T.....T.G..AA....T.................G...T....C.....G..G.....G.....A..TC.C..C...A. MG570420.1_Pimephales_notatus_vo T....C.....AA....T.........T....C..T..TC....T..T.....C.....G..T......C.......CA. MG570443.1_Notropis_hudsonius_is ......T....AA.......C......T.G...T.G...C.T..C..T........T..C..T..A..TC.C..G..CA. MG570444.1_Rhinichthys_atratulus T.....T....GA....T........G........G...T.G..C..G..G..G.....G........T..C..CA.TA. MG570445.1_Rhinichthys_atratulus T.....T....GA....T........G........G...T.G..C..G..G..G.....G........T..C..CA.TA. MG570447.1_Luxilus_cornutus_isol T....C..G..AA....T...........G..C..T...C.C..C..T.....G........T..A..TC.......CA. MG570449.1_Luxilus_cornutus_isol T....C..G..AA....T...........G..C..T...C.C..C..T.....G........T..A..TC.C.....CA. MG570450.1_Pimephales_notatus_is T....C.....AA....T.........T....C..T..TC....T..T.....C.....G..T......C.......CA. MG570451.1_Notropis_bifrenatus_i T..........AA....TG.C........T..C..C...C.C..T..C........T.....T..A..TC.C.....TA. MG570453.1_Exoglossum_maxillingu T.....T....AA....T..............G..T...T.G..C..C...........C..T..A..TC.C..C..CA. MG570454.1_Pimephales_promelas_i T....C.....AA....T..............C..T..TC.T..C..T.....C..T.....T..A...C.C.....CA. MG570455.1_Notropis_atherinoides T.....T....GA...................C..T...C....T..T...........C..T.....TC.C.....CA. MG570456.1_Notropis_atherinoides T.G...T....GA.............G.....C..T...C.G..T..T...........C..T.....TC.C.....CA. MG570457.1_Pimephales_notatus_is T....C.....AA....T.........T....C..T..TC....T..T.....C.....G..T......C.......CA. MG570458.1_Pimephales_notatus_is T....C.....AA....T.........T....C..T..TC....T..T.....C.....G..T......C.......CA. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v T.G...T....AA....T..C..C........C..T...C.C..C..T........T..C.....A...C.C..G..CA. MT364325.1_Hybognathus_amarus_mi T....CT.G..AA....T..............C..T..TC.C..C..C.....C..T.....T..A..TC.C.....TA. MT501368.1_Gila_cypha_isolate_SN .....CT....TA....T.....C........C..G.....G..C.......................T..C..C..CA. MT501369.1_Notropis_simus_pecose T.G...T.G..AA.......C.....G.....C..C...C.C.TC..T..G........C.....A..TC.C..T..TA. MT501378.1_Hybognathus_amarus_is .....CT.G..AA....T..............C..T..TC.C..C..C.....C..T.....T..A..TC.C.....TA. MT501385.1_Notropis_jemezanus_vo T.G...T....AA....T...........G..C..T...C.C..T..T...........C..T..A..TC.C.....CA. MT501391.1_Rhinichthys_osculus_i ..C..CT....AA....T..............C..G...T.G..C...........T........A..TC.C..C..CA. MT667239.1_Rhinichthys_osculus_t ..C..CT....AA....T..............C..G...T....C...........T...........TC.G..C..CA. MT667242.1_Luxilus_cornutus_vouc T....C..G..AA....T...........G..C..T...C.C..C..T.....G........T..A..TC.C.....CA. MW300340.1_Hybognathus_placitus_ T....C..G..AA....T.....C........C..T..TC.T..C..T..G..C........T......C.C.....CA. MW300341.1_Hybognathus_placitus_ T....C..G..AA....T.....C........C..T..TC.T..C..T..G..C........T......C.C.....CA. NC_013763.1_Mylocheilus_caurinus ..C...T....AA....T.........T.G..C..G.....G.......................A.....C..C...A. NC_033926.1_Opsopoeodus_emiliae_ T.......C..AA....T..............C..T..GC.T..C........C...........A..T..C..CA.CA. NC_037008.1_Notropis_chalybaeus_ T....CT....AA.......C..C........C..T...C.T..C..T........T..T..T..A..TC.......CA. NC_037009.1_Notropis_heterolepis T..........AA....T..C..C........C..C...C.C..T..T........T........A..TC.C......A. NC_037010.1_Rhinichthys_obtusus_ T.....T.G..AA....T.................G...T....C.....G..G.....G.....A..TC.C..C...A. NC_037014.1_Notropis_hudsonius_i ......T....AA.......C......T.G...T.G...C.T..C..T........T..C..T..A..TC.C..G..CA. NC_037015.1_Exoglossum_maxilling T.....T....AA....T..............G..T...T.G..C..C...........C..T..A..TC.C..C..CA. NC_054086.1_Ptychocheilus_lucius ......T.....A...................C........G.....G.................A..T..C......A. NC_054257.1_Gila_cypha_isolate_S .....CT....TA....T.....C........C..G.....G..C.......................T..C..C..CA. NC_054259.1_Gila_nigrescens_isol ......T.....A...................C...........C..............G........T..C..C..GA. NC_054260.1_Hybognathus_amarus_i T....CT.G..AA....T..............C..T..TC.C..C..C.....C..T.....T..A..TC.C.....TA. NC_054262.1_Notropis_jemezanus_v T.G...T....AA....T...........G..C..T...C.C..T..T...........C..T..A..TC.C.....CA. Pimephales_notatus_R2S3_________ T....C..G..AA..............T....C..T..TC.T..T..T.....C........T.....TC....G..TA. Pimephales_tenellus_tenellu_R2S1 T.G.....G..AA................G..C..T..TC.C..C..T.....T..T........A..TC.C.....CA. Pimephales_tenellus_parvice_R2S2 T.G.....G..AA................G..C..T..TC.C..C..T.....T..T.....T..A..TC.C.....CA. Pimephales_notatus_R1S1_________ T....C..G..AA...................C..T..TC.T..T..T.....C........T.....TC....G..TA. MG570452.1_Pimephales_promelas_i T....C.....AA....T..............C..T..TC.T..C..T.....C..T.....T..A...C.C.....CA. MG570452.1_Pimephales_promelas_S T....C.....AA....T..............C..T..TC.T..C..T.....C..T.....T..A...C.C.....CA. AB626850.1_Megalobrama_terminali TGACCTCAACCTAGGGGTTCTGTTTATCCTGGCCCTGTCAAGCCTCGCAGTGTACTCTATTCTAGGATCAGGGTGAGCAT AP010779.1_Mylocheilus_caurinus_ ......T...T.......C..A..C.....A..AT.A........T.....A..T........T........C....... AP011215.1_Gila_sp._1460_mitocho ......T...T.....A.C........TT.....T.A..G.....T........T..C..C..T..G..C..A....... AP011263.1_Scardinius_erythropht ..................C..A.....T..A.....C..............A...........C..G.....A....... AP011267.1_Algansea_lacustris_mi .A.............T.....A......T.A..AT....G.....T.....A..T........T..C........G..C. AP011268.1_Yuriria_alta_mitochon .A.......TT....T...........T..A..AT.A..G..T........A..T........T..C.....A....... AP011273.1_Hybognathus_nuchalis_ .A.T..G...T....T...T.A..C..T..A..AT.A........T.....A...........T..C..G..A....... AP011274.1_Couesius_plumbeus_mit ......T...T....A.....A.....TT.......T...........G.....T..C.....T..G..G..T....... AP011275.1_Platygobio_gracilis_m .A....T.....G..TA.C........TT.A..AT..........T.....A..T........T..G.....T....... AP011277.1_Erimystax_dissimilis_ ......T...T....A..............A..AT.A........T..T..A..T........T................ AP011279.1_Pimephales_promelas_m .A....G...T....T..C..A.....TT.A..A..A........T.....A..T........T..C............. AP011280.1_Clinostomus_elongatus ......T...T....A............T.A..A..A..G.....T.....A..T........T..C.....A....... AP012079.1_Luxilus_chrysocephalu .A....T...T....T.....C......T.A..AT.A........T..G..A..T.....C..T..C............. AP012080.1_Macrhybopsis_gelida_m .A....T..T.....T..C..A.....TT.A..AT..........T.....A..T..A.....T..G.....A....... AP012083.1_Notropis_atherinoides .A....T...T....T............T.A..A..A..C.....T..G..A..T........T..C.....C..G..G. AP012084.1_Notropis_baileyi_mito .A........T....CA....C.....TT.A..AT.A........T.....T...........T..C.....C....... AP012087.1_Cyprinella_galactura_ CA....T...T....T...T..........A..A...........T.....C..T...........C..G.......... AP012088.1_Hybopsis_lineapunctat .A....T...T....T..C..A.....TT.A..G..A........T.....A...........T..C.....T..G.... AP012090.1_Luxilus_cornutus_mito .A....T..TT.G..T..G..C......T.A..AT..........T.....A..T........T................ AP012091.1_Lythrurus_ardens_mito .A........T....T.....A......T.A..AT.A........T.....A...........T..C.....C....... AP012092.1_Lythrurus_fumeus_mito .A....T...T....T.....A......T.A..A..A........T.....A..T........C..C.....A....... AP012093.1_Lythrurus_lirus_mitoc .A....T...T....T............T.A..GT.A........T..G..A...........T..C.....C..G..C. AP012094.1_Lythrurus_umbratilis_ .A....T...T....T.....A......T.A..AT.A........T.....A...........T..C.....C....... AP012095.1_Macrhybopsis_meeki_mi .A.T..T..T.....T..C..A.....TT....AT.A........T.....A..T........C..G.....A..G.... AP012097.1_Notropis_bifrenatus_m .A....T..TT....T.....A......T.A..A..C.....T..T........T........T..C.....C....... AP012098.1_Pimephales_sp._MCZunc .A....T...T....T..C..C.....TT....AT.A..T.....T.....A..T........T..C.....A....... AP012100.1_Notropis_telescopus_m .A....T..TT....T..C..A.....TT....A..A........T.....A..T.....C..T..C.....A....... AP012101.1_Pimephales_notatus_mi .A....T...T....T..C..C.....TT....AT.A..T.....T.....A..T........T..C.....A....... AP012102.1_Pimephales_vigilax_mi .A....T..T.....T.....A.....T.....A..A........T.....A..T..C.....T..C.....A....... AP012103.1_Pogonichthys_macrolep ..........T.......CT.A..C...T.A..AT.A..............A...........C..G..G..C....... AP012106.1_Richardsonius_balteat ......T...T..........C........A..AT.A..G..T..T........T........C..G............. AP012108.1_Notropis_chrosomus_mi CA....T...T....T...........T..A..A..A..............A..T........T..C..G..A..G.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .A....T..T.....T.....A.....T.....A..A........T.....A..T..C.....T..C.....A....... Pimephales_vigilax_R1S3_________ .A....T..T.....T.....A.....T.....A..A........T.....A..T..C.....T..C.....A....... DQ536429.1_Notropis_stramineus_m .A........T....A.....C.....T..A..A..A..C.....T.....C..T........T..C.....C....... JX910141.1_Squaliobarbus_curricu ..................C...........A.....A..............C.....C.....C................ KC351187.1_Squaliobarbus_curricu ..................C...........A.....A..............C.....C.....C................ KT278765.1_Pimephales_promelas_m .A....G..TT.G..T..C..A.....TT.A..A...........T.....A..T........T..C.....A....... KT289925.1_Pimephales_promelas_m .A....G...T.G..T..C..A.....TT.A..A..A........T..G..A..T........T..C.....A....... KT424924.1_Rhinichthys_osculus_m C.....T...T....A.....C..CG.TT.A..A.......................C.....T..G.....A....... KU200257.1_Chanodichthys_ilishae C.........T.......C..C........A...T.A..............A..T.................A..G.... MF972070.1_Siphateles_bicolor_mo C.........T.G.....C..A.....TT.....T.A........T.....A.....G..C..T..G..C..C....... MG570407.1_Notropis_chalybaeus_v .A....A..TT....T.....A.....TT.A..A..A........T.....T...........T..C.....A....... MG570408.1_Notropis_bifrenatus_v .A....T..TT....T.....A......T.A..A..C.....T..T........T........T..C.....C....... MG570413.1_Notropis_heterolepis_ .A....T........T.....A......T.A..A..A........T.....A..T........C..C............. MG570416.1_Rhinichthys_obtusus_v ......T...T.G.....C..............AT................A..T.....C..T..C........G..C. MG570417.1_Rhinichthys_obtusus_v ......T...T.G.....C..............AT................A..T.....C..T..C........G..C. MG570420.1_Pimephales_notatus_vo .A....T...T....T..C..C.....TT....AT.A..T.....T.....A..T........T..C.....A....... MG570443.1_Notropis_hudsonius_is CA....T...T.................T....AT.A..T.....T.....A..T..A.....T..G............. MG570444.1_Rhinichthys_atratulus ......A...T......................AT.A...........G.....T..A..C..T..C.....A..G..C. MG570445.1_Rhinichthys_atratulus ......A...T......................A..A...........G.....T..A..C..T..C.....A..G..C. MG570447.1_Luxilus_cornutus_isol .A....T..TT.G..T..G..C......T.A..AT..........T.....A..T........T................ MG570449.1_Luxilus_cornutus_isol .A....T..TT.G..T..G..C......T.A..AT..........T.....A..T........T................ MG570450.1_Pimephales_notatus_is .A....T...T....T..C..C.....TT....AT.A..T.....T.....A..T........T..C.....A....... MG570451.1_Notropis_bifrenatus_i .A....T..TT....T.....A......T.A..A..C.....T..T........T........T..C.....C....... MG570453.1_Exoglossum_maxillingu ......T...T....A..............A..AT.A........T..T..A..T........T................ MG570454.1_Pimephales_promelas_i .A....G...T....T..C..A.....TT.A..A..A........T.....A..T........T..C.....A....... MG570455.1_Notropis_atherinoides .A....T...T....T.....C.....TT.A..A..A..C.....T..G..A..T........T..C.....C..G..G. MG570456.1_Notropis_atherinoides .A....T...T....TA...........T.A..A..A..C.....T..G..A..T........T..C.....C..G..G. MG570457.1_Pimephales_notatus_is .A....T...T....T..C..C.....TT....AT.A..T.....T.....A..T........T..C.....A....... MG570458.1_Pimephales_notatus_is .A....T...T....T..C..C.....TT....AT.A..T.....T.....A..T........T..C.....A....... MK421554.1_Parabramis_pekinensis ............................T................................................... MT333789.1_Notropis_lutipinnis_v CA....T...T....TA....A.....T..A..AT.A..G.....T.....A..T........T..C............. MT364325.1_Hybognathus_amarus_mi .A.T..A..TT....TA..T.......T.....AT.A........T.....A...........T..C.....A....... MT501368.1_Gila_cypha_isolate_SN ......T...T.......C........TT.....T.A........T........T.....C..T..G..C..A....... MT501369.1_Notropis_simus_pecose .A....T...T....C.....C.....TT....AT.A........T........T..G.....T..C..G.......... MT501378.1_Hybognathus_amarus_is .A.T..A..TT....TA..T.......T.....AT.A........T.....A...........T..C.....A....... MT501385.1_Notropis_jemezanus_vo .A....T...T.G..T............T....A..A..C.....T..G..A...........T..C.....C..G..C. MT501391.1_Rhinichthys_osculus_i ......A...T.............C.....A..A..A........T..C..A.....C.....T..G..G........G. MT667239.1_Rhinichthys_osculus_t ......A...T........T....C...T.A..A..A........T..C..A.....C.....T..G...........G. MT667242.1_Luxilus_cornutus_vouc .A....T..TT.G..T..G..C......T.A..AT..........T.....A..T........T................ MW300340.1_Hybognathus_placitus_ .A....T..TT....T..C..C..C..TT.A..AT.A..G.....T.................T..C.....C....... MW300341.1_Hybognathus_placitus_ .A....T..TT....T..C..C..C..TT.A..AT.A..G.....T.................T..C.....C....... NC_013763.1_Mylocheilus_caurinus ......T...T.......C..A..C.....A..AT.A........T.....A..T........T........C....... NC_033926.1_Opsopoeodus_emiliae_ .A.......T.....T..C..A.....TT.A..AT..........TA.......T..C.....T..C.....A..G.... NC_037008.1_Notropis_chalybaeus_ .A....A..TT....T.....A.....TT.A..A..A........T.....T...........T..C.....A....... NC_037009.1_Notropis_heterolepis .A....T........T.....A......T.A..A..A........T.....A..T........C..C............. NC_037010.1_Rhinichthys_obtusus_ ......T...T.G.....C..............AT................A..T.....C..T..C........G..C. NC_037014.1_Notropis_hudsonius_i CA....T...T.................T....AT.A..T.....T.....A..T..A.....T..G............. NC_037015.1_Exoglossum_maxilling ......T...T....A..............A..AT.A........T..T..A..T........T................ NC_054086.1_Ptychocheilus_lucius ......T...T....AA.C..A.....TT.....T.A........T.....A..T.....C..T.....C..A....... NC_054257.1_Gila_cypha_isolate_S ......T...T.......C........TT.....T.A........T........T.....C..T..G..C..A....... NC_054259.1_Gila_nigrescens_isol ......T..TT....TA.C........TT.....T.A........T.....A..T.....C..T..T..C.......... NC_054260.1_Hybognathus_amarus_i .A.T..A..TT....TA..T.......T.....AT.A........T.....A...........T..C.....A....... NC_054262.1_Notropis_jemezanus_v .A....T...T.G..T............T....A..A..C.....T..G..A...........T..C.....C..G..C. Pimephales_notatus_R2S3_________ .A.T..T........T..C..C.....TT.A..A.....T.....T.....A..T........C..C.....A....... Pimephales_tenellus_tenellu_R2S1 .A....A...T....C..C..A..C..TT.A..A........T..T.....A..T..C.....T..C.....C....... Pimephales_tenellus_parvice_R2S2 .A....A...T....C..C..A..C..TT.A..A........T..T.....A..T..C.....T..C.....C....... Pimephales_notatus_R1S1_________ .A.T..T........T..C..C.....TT.A..A.....T.....T.....A..T........C..C.....A....... MG570452.1_Pimephales_promelas_i .A....G...T.G..T..C..A.....TT.A..A..A........T.....A..T........T..C.....A....... MG570452.1_Pimephales_promelas_S .A....G...T....T..C..A.....TT.A..A..A........T.....A..T........T..C............. AB626850.1_Megalobrama_terminali CAAATTCAAAATATGCACTAATCGGAGCCCTACGGGCCGTAGCCCAAACAATTTCCTATGAAGTAAGCCTCGGACTAATT AP010779.1_Mylocheilus_caurinus_ .G...........C.....T..T..............A..G.....G........A.....G..G.....T.....T... AP011215.1_Gila_sp._1460_mitocho .G...........C........T..T.....C.....G..C...........C..G.....G..............T... AP011263.1_Scardinius_erythropht .G..C........C..C.....T..G...T.......A.....T..G..G.................T..T..G..T..C AP011267.1_Algansea_lacustris_mi .......G.....C..G..T..T........T.....A..C.....G........A..C...........T.....C..C AP011268.1_Yuriria_alta_mitochon ....C..............C..T........T..A..A..T........C.....A..C.....G.....T.....T..C AP011273.1_Hybognathus_nuchalis_ ..........G........T..T..T........A..A..T..............A.................G..T... AP011274.1_Couesius_plumbeus_mit .C...........C........T..G.....C.....A....................C.................C... AP011275.1_Platygobio_gracilis_m ..........G..C.....G..T..G..G.....A..A..T..............A..C..G...........G..T..C AP011277.1_Erimystax_dissimilis_ ....C........C........T..G........A..A..T.....G........G....................T... AP011279.1_Pimephales_promelas_m .T........G..C.....C..............A..G..T..............G..C...........T.....T..C AP011280.1_Clinostomus_elongatus ......................T.....T..G.....A..C..........................T..T.....T... AP012079.1_Luxilus_chrysocephalu ...................C.....G........A..A..T..............A..C...........T.....C..C AP012080.1_Macrhybopsis_gelida_m ......................T..G........A..A..T..............A..C.....T...........T... AP012083.1_Notropis_atherinoides .G..C..............C..T...........A..A..T.....G..G.....A..C..G........T.....T..C AP012084.1_Notropis_baileyi_mito ................T..C..............A..A..T...........C....................G..T..C AP012087.1_Cyprinella_galactura_ ..........G.....G..T..T..G.....G..A..A.................A........G.....T.....T... AP012088.1_Hybopsis_lineapunctat ....C........C.....T..T..G........A..A..T...........C.......................T..C AP012090.1_Luxilus_cornutus_mito ..........G........C.....G........A..A..T.....G........A..C.....G.....T..G..T..C AP012091.1_Lythrurus_ardens_mito .......G.....C.....C.....G........A..A..T.....G.......................T..G..C..C AP012092.1_Lythrurus_fumeus_mito .C........G..C.....C.....G.....G.....A..T.....G........T..C...........A.....C..C AP012093.1_Lythrurus_lirus_mitoc .......G.....C.....C.....G........A..A..T.....G........T........G.....T.....C..C AP012094.1_Lythrurus_umbratilis_ .......G.....C.....C.....G........A..G..T.............................T..G..C..C AP012095.1_Macrhybopsis_meeki_mi ......................T..G........A..A..T..............A........T...........T... AP012097.1_Notropis_bifrenatus_m ....C.....G..C.....C.........T....A..A..T...........C.....C.....G.....A.....C... AP012098.1_Pimephales_sp._MCZunc .C..C..............T...........G..A..A..T.....G........A.....G..T.....A.....T... AP012100.1_Notropis_telescopus_m ................T..C.....G...........A..T.....G........A.................G..T..C AP012101.1_Pimephales_notatus_mi .C..C..............T...........G..A..A..T..............A.....G..T...........T... AP012102.1_Pimephales_vigilax_mi .T.................T...........G..A..A..T..............G..............T.....T... AP012103.1_Pogonichthys_macrolep .......G.....C........T......T.......A...........G.....A.....G..............T... AP012106.1_Richardsonius_balteat .............C........T.....TT.G.....A..C..............A.....G........A.....T... AP012108.1_Notropis_chrosomus_mi .C........G..C.....T.....G...........A..T.....G........A..C..G..............C... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .T.................T...........G..A..A..T..............G..............T.....T... Pimephales_vigilax_R1S3_________ .T.................T...........G..A..A..T..............G..............T.....T... DQ536429.1_Notropis_stramineus_m .............C.....C..T........G..A..G..T.....G........G.....G..............G..C JX910141.1_Squaliobarbus_curricu .............C........T..G...T....A..G.................A........T..T..A........C KC351187.1_Squaliobarbus_curricu .............C........T..G...T....A..G.................A........T..T..A........C KT278765.1_Pimephales_promelas_m .T........G..C.....C..............A..A..T..............G..C.....G.....T.....T... KT289925.1_Pimephales_promelas_m ..........G..C.....C..............A..A..T..............G..C.....G.....T.....T..C KT424924.1_Rhinichthys_osculus_m .......G..G........G..T..G........A..G..C.....G..G.....A..............T.....T... KU200257.1_Chanodichthys_ilishae .........................G...........T.........................................C MF972070.1_Siphateles_bicolor_mo ..........G..C........T..T.....C.....A..C........G.....A....................C... MG570407.1_Notropis_chalybaeus_v ..........G........C..T..G........A..A..T..T...........A..............A..G..T..C MG570408.1_Notropis_bifrenatus_v ....C.....G..C.....C.........T....A..A..T...........C.....C.....G.....A.....C... MG570413.1_Notropis_heterolepis_ .T.................C..............A..A..T.....G.....C..A..C..G........T.....T... MG570416.1_Rhinichthys_obtusus_v .......G.....C..G........G........A..G..C........G.....A.....G........T.....T... MG570417.1_Rhinichthys_obtusus_v .......G.....C..G........G........A..G..C........G.....A.....G........T.....T... MG570420.1_Pimephales_notatus_vo .C..C..............T...........G..A..A..T.....G........A.....G..T.....A.....T... MG570443.1_Notropis_hudsonius_is ..........G..C.....C..T........C..A..A..T........C.....A..............T.....T..C MG570444.1_Rhinichthys_atratulus .......G.....C..G........G...........G..C.....G..G.....A....................C... MG570445.1_Rhinichthys_atratulus .......G.....C..G........G...........G..C.....G..G.....A....................C... MG570447.1_Luxilus_cornutus_isol ..........G........C..............A..A..T..............A..C.....G.....T.....T..C MG570449.1_Luxilus_cornutus_isol ..........G........C..............A..A..T..............A..C.....G.....T.....T..C MG570450.1_Pimephales_notatus_is .C..C..............T...........G..A..A..T.....G........A.....G..T.....A.....T... MG570451.1_Notropis_bifrenatus_i ....C.....G..C.....C.........T....A..A..T...........C.....C.....G.....A.....C... MG570453.1_Exoglossum_maxillingu ....C........C........T..G........A..A..T.....G........G....................T... MG570454.1_Pimephales_promelas_i ..........G..C.....C..............A..A..T..............G..C.....G.....T.....T..C MG570455.1_Notropis_atherinoides .G..C...........G..C..T...........A..A..T.....G..G.....A..C..G........T.....T..C MG570456.1_Notropis_atherinoides .G..C..............C..T...........A..A..T.....G..G.....A..C..G........T.....T..C MG570457.1_Pimephales_notatus_is .C..C..............T...........G..A..A..T.....G........A.....G..T.....A.....T... MG570458.1_Pimephales_notatus_is .C..C..............T...........G..A..A..T.....G........A.....G..T.....A.....T... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .............C.....C.................A..T...........C..A....................T..C MT364325.1_Hybognathus_amarus_mi .......G..G........T..T..T........A..A..T..............A.................G..T... MT501368.1_Gila_cypha_isolate_SN ....C.................T..T.....C.....G..C...........C..A.....G..............T... MT501369.1_Notropis_simus_pecose .............C.....C.....G........A..G..T........C.....G.....G............T....C MT501378.1_Hybognathus_amarus_is .......G..G........T..T..T........A..A..T..............A.................G..T... MT501385.1_Notropis_jemezanus_vo .G..C...........G..C.....G........A..A..T.....G........A..C.....G.....T.....T... MT501391.1_Rhinichthys_osculus_i .............C..G........G........A..G..C.....G.....C..A.....G..G.....T.....T... MT667239.1_Rhinichthys_osculus_t .............C..G........G........A..G..C.....G.....C..A........G.....T.....T... MT667242.1_Luxilus_cornutus_vouc ..........G........C..............A..A..T..............A..C.....G.....T.....T..C MW300340.1_Hybognathus_placitus_ .T..C..............T..T..T...........G..T.....G........G..C..G...........G..T..C MW300341.1_Hybognathus_placitus_ .T..C..............T..T..T...........G..T.....G........G..C..............G..T..C NC_013763.1_Mylocheilus_caurinus .G...........C.....T..T..............A..G.....G........A.....G..G.....T.....T... NC_033926.1_Opsopoeodus_emiliae_ .C........G........C.....G........A..A..T.....G........A....................C..C NC_037008.1_Notropis_chalybaeus_ ..........G........C..T..G........A..A..T..T...........A..............A..G..T..C NC_037009.1_Notropis_heterolepis .T.................C..............A..A..T.....G.....C..A..C..G........T.....T... NC_037010.1_Rhinichthys_obtusus_ .......G.....C..G........G........A..G..C........G.....A.....G........T.....T... NC_037014.1_Notropis_hudsonius_i ..........G..C.....C..T........C..A..A..T........C.....A..............T.....T..C NC_037015.1_Exoglossum_maxilling ....C........C........T..G........A..A..T.....G........G....................T... NC_054086.1_Ptychocheilus_lucius ......................T..T.....C.....G..C.....G........A..C.................T... NC_054257.1_Gila_cypha_isolate_S ....C.................T..T.....C.....G..C...........C..A.....G..............T... NC_054259.1_Gila_nigrescens_isol .............C........T..T.....C.....G..C.....G.....C..G.....G..............T... NC_054260.1_Hybognathus_amarus_i .......G..G........T..T..T........A..A..T..............A.................G..T... NC_054262.1_Notropis_jemezanus_v .G..C.....G.....G..C.....G........A..A..T.....G........A..C.....G.....T.....T..C Pimephales_notatus_R2S3_________ .C.................T..T...........A..A..T.....G........G..C.....C.....T.....C... Pimephales_tenellus_tenellu_R2S1 .T..C.....G........T..............A..A..T..............A..............T.....T... Pimephales_tenellus_parvice_R2S2 .T..C.....G........T..T...........A..A..T..............A..............T.....T... Pimephales_notatus_R1S1_________ .C.................T..T...........A..A..T.....G........G..C.....C.....T.....C... MG570452.1_Pimephales_promelas_i ..........G..C.....C..............A..A..T..............G..C.....G.....T.....T..C MG570452.1_Pimephales_promelas_S .T........G..C.....C..............A..G..T..............G..C...........T.....T..C AB626850.1_Megalobrama_terminali CTTCTATCGGTCATTATCTTCTCAGGAGGCTATACTCTACAAACATTTAGCACAGCCCAAGAAAGCATCTGATTATTAGC AP010779.1_Mylocheilus_caurinus_ ..A..T..A..A.....T.....T..C........C..C........C.A.........G......G.A......C.G.. AP011215.1_Gila_sp._1460_mitocho ..C..C..A..A........T..T..C...........C..........AT..C..G.....G..TG.....C..C.... AP011263.1_Scardinius_erythropht ..C..T..A......G.......C.....T........C........C.A.........G...........G...C.... AP011267.1_Algansea_lacustris_mi T.A..C..A..A...G.......C...........C..T..G..G....AT...........G...G.A......C..AT AP011268.1_Yuriria_alta_mitochon ..C..C..A..A...G....T..T..G...........T..G..C....AT...A..........TG.G...C.GC..AT AP011273.1_Hybognathus_nuchalis_ ..C..C..A..A..CG.T..T..T..G.....C..C..T..G..C....A...C.........G..G.A...C..C.CAT AP011274.1_Couesius_plumbeus_mit ..C..T..A..A...........G..............C...........T..C.................GC.G..... AP011275.1_Platygobio_gracilis_m T.G..T..A..T...G....T..T.....T..C..C..C..........AT..C..T.........G.A..G..G..GAT AP011277.1_Erimystax_dissimilis_ T.A..C..A..G...G.G.....T..G..T.....C..C.....G....A....A..........TG.A...C.GC..AT AP011279.1_Pimephales_promelas_m ..A..C..A..T...........T..C.....C..C..T..........AT............GC.G.A......C.CAT AP011280.1_Clinostomus_elongatus ..A..T..A..A...G.T.....T..C..T..C.....C.....G....AT.T.............G.A...C..C.G.. AP012079.1_Luxilus_chrysocephalu ..C..C..A..A........T..T..G..A..C..C..T..G..C....AT..G............G.A...C..C..AT AP012080.1_Macrhybopsis_gelida_m T.A..T..A..A...G.TC.T..C..G...........C........C.AT..TA..........TG.A.........AT AP012083.1_Notropis_atherinoides ..C..C..A..A..CG....T..C..G.....C..C..T...........T..C..............T...C.GC.C.T AP012084.1_Notropis_baileyi_mito ..C..C..A..A...G....T..T..G........C........G....A................G.A...C.CC.C.T AP012087.1_Cyprinella_galactura_ A.C..T..A..G..CG....T..C..G..T.....C..T..G............A........G..G.A...C..C..AT AP012088.1_Hybopsis_lineapunctat ..C..C..A..A..CG....T..C..G.....C..C..C..G.......AT.....T.........G.A...C.GC.TAT AP012090.1_Luxilus_cornutus_mito ..C..C..A..A........T..T........C..C..T..........AT..............TG.A......C.GAT AP012091.1_Lythrurus_ardens_mito ..C..C..............T..T..C..G..C.....T.....G....AT...........G...G.A..GC.GC.GAT AP012092.1_Lythrurus_fumeus_mito ..C..C.....A...G....T..T..G..T.....C..T.....G....AT.....A..G..G...G.G...C.....AT AP012093.1_Lythrurus_lirus_mitoc ..G..C.....A........T..T..C..G..C.....T..G..G....AT.....T..G..G...G.A..GC.C..GAT AP012094.1_Lythrurus_umbratilis_ ..C..C..............T..T..C..G..C.....T.....G....AT...........G...G.A..GC.GC.GAT AP012095.1_Macrhybopsis_meeki_mi T.A..T..A..G...G..C....C..G..T........C..........AT..TA..........TG.A......G..AT AP012097.1_Notropis_bifrenatus_m ..C..T..A..A...G.......T........C..C..T..G.......AT..C....................GC.T.T AP012098.1_Pimephales_sp._MCZunc ..C..C..A..A..C........T..C.....C..C..T..........AT...............G.A...C..C.TAT AP012100.1_Notropis_telescopus_m ..C..C..A..G...G....T..T...........C..T.....C....AT..G..............T...C.GC.TAT AP012101.1_Pimephales_notatus_mi ..C..C..A..A..C........T..C.....C..C..T..........AT..GA...........G.A...C..C.TAT AP012102.1_Pimephales_vigilax_mi A.C..C..AC.A..CG....T..T..T........C..T.....C.....T...A........G....T...C.CC.TAT AP012103.1_Pogonichthys_macrolep ..G..C..A..A...........T..C.....C..C..C........C.A................G.A......C.... AP012106.1_Richardsonius_balteat ..A..T..A..A.....T.....T..G..T..C..C..C..........A................G.G...C..C.... AP012108.1_Notropis_chrosomus_mi ..C..C..A..G...G....T..T..C........C..G.....G....A....A...........G.A...C.GC.CAT AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ A.C..C..AC.A..CG....T..T..T........C..T.....C.....T...A........G....T...C.CC.TAT Pimephales_vigilax_R1S3_________ A.C..C..AC.A..CG....T..T..T........C..T.....C.....T...A........G....T...C.CC.TAT DQ536429.1_Notropis_stramineus_m ..C..T.....A..CG....T..T..G..T..C..C..T.....C....AT..C..G..G..GGC.G.A..G..GG.T.T JX910141.1_Squaliobarbus_curricu ...T....A..A..............C..G..C..C..T........C........................C..C.... KC351187.1_Squaliobarbus_curricu ...T....A..A..............C..G..C..C..T........C........................C..C.... KT278765.1_Pimephales_promelas_m ..A..C..A..G..C........T..C.....C..C..T..........AT............GC.G.A......C.CAT KT289925.1_Pimephales_promelas_m ..A..C..A..G..C........T..C.....C..C..T..........AT............GC.G.A..G...C.TAT KT424924.1_Rhinichthys_osculus_m ..G..T..A..A...........T..G..T.....C..C........C.A...G..T..G..G...G.G...C..C.GAT KU200257.1_Chanodichthys_ilishae ........A..A.................T.....C.............................T......C....... MF972070.1_Siphateles_bicolor_mo ..C..C..A..A...G....T..T..C...........C.....G....AT.....A.....GG.T..T...C.GC.... MG570407.1_Notropis_chalybaeus_v ..C..C..A..A...G....T..T..G........C.............AT..T............G.A...C.GC.T.T MG570408.1_Notropis_bifrenatus_v ..C..T..A..A...G.......T........C..C..T..G.......AT..C....................GC.T.T MG570413.1_Notropis_heterolepis_ ..C..C..A..A...G....T..T.....T.....C..T.....G....AT............G..G.A..GC.....AT MG570416.1_Rhinichthys_obtusus_v ..G..T..A......G.......G..G..T.....C..T..........A...G.....G......G.A...C..C.TAT MG570417.1_Rhinichthys_obtusus_v ..G..T..A......G.......G..G..T.....C..T..........A...G.....G......G.A...C..C.TAT MG570420.1_Pimephales_notatus_vo ..C..C..A..A..C........T..C.....C..C..T..........AT...............G.A...C..C.TAT MG570443.1_Notropis_hudsonius_is ..G..C..A..A........T..T........C..A..T..G.......AT.....T..G......G.A...C.TC..CT MG570444.1_Rhinichthys_atratulus ..G..T..A..A...G..........G.....C..C..T..G.......A...G.....G......G....GC..C.TAT MG570445.1_Rhinichthys_atratulus ..G..T..A..A...G..........G.....C..C..T..G.......A...G.....G......G....GC..C.TAT MG570447.1_Luxilus_cornutus_isol ..C..C..A..A........T..T........C..C..T..........AT..............TG.A......C..AT MG570449.1_Luxilus_cornutus_isol ..C..C..A..A........T..T........C..C..T..........AT..............TG.A......C..AT MG570450.1_Pimephales_notatus_is ..C..C..A..A..C........T..C.....C..C..T..........AT...............G.A...C..C.TAT MG570451.1_Notropis_bifrenatus_i ..C..T..A..A...G.......T........C..C..T..G.......AT..C....................GC.T.T MG570453.1_Exoglossum_maxillingu T.A..C..A..G...G.G.....T..G..T.....C..C.....G....A....A..........TG.A...C.GC..AT MG570454.1_Pimephales_promelas_i ..A..C..A..G..C........T..C.....C..C..T..........AT............GC.G.A..G...C.TAT MG570455.1_Notropis_atherinoides ..C..C..A..A..CG....T..C..G.....C..C..T..........AT..C..............T...C.GC.C.T MG570456.1_Notropis_atherinoides ..C..C..A..A..CG....T..C..G.....C..C..T..........AT..C..............T...C.GC.C.T MG570457.1_Pimephales_notatus_is ..C..C..A..A..C........T..C.....C..C..T..........AT...............G.A...C..C.TAT MG570458.1_Pimephales_notatus_is ..C..C..A..A..C........T..C.....C..C..T..........AT...............G.A...C..C.TAT MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..C..C..A..A...G....T..T..C........C.............AT............G..G.A......C.TAT MT364325.1_Hybognathus_amarus_mi ..C..C..A..A..CG.T..T..C..G.....C..C..T..G..C....A...C.........GC.G.A...C..C.CAT MT501368.1_Gila_cypha_isolate_SN ..C..C..A..A...G....T..T..C...........C..........A......A.....G..T.....GC..C...T MT501369.1_Notropis_simus_pecose ..C..CG....A........T..T..G..T..C..C........G....A...T............G.A...C.GC.TAT MT501378.1_Hybognathus_amarus_is ..C..C..A..A..CG.T..T..C..G.....C..C..T..G..C....A...C.........GC.G.A...C..C.C.T MT501385.1_Notropis_jemezanus_vo ..A..C..A..A..CG....T..C..G.....C..C..T..........AT..C........G.....T..GC..C.C.T MT501391.1_Rhinichthys_osculus_i ..G..T..A..A...........T..G..T.....C..C..G..G..C.A............G...G........C..AT MT667239.1_Rhinichthys_osculus_t ..G..C..A..A...G.......T..G..T.....C..C..G..G..C.A............G...G........C..AT MT667242.1_Luxilus_cornutus_vouc ..C..C..A..A........T..T........C..C..T..........AT..............TG.A......C..AT MW300340.1_Hybognathus_placitus_ ..C..C..A..A...G.T..T..T..G.....C..C..C..G.......A...T...........TG.A...C.GC.CCT MW300341.1_Hybognathus_placitus_ ..C..C..A..A...G.T..T..T..G.....C..C..C..G.......A...T...........TG.A...C.GC.CCT NC_013763.1_Mylocheilus_caurinus ..A..T..A..A.....T.....T..C........C..C........C.A.........G......G.A......C.G.. NC_033926.1_Opsopoeodus_emiliae_ ..C..C..A..A..C.....T..T..G.....C..C..T..........AT..TA.A........TG.A..GC..C.TAT NC_037008.1_Notropis_chalybaeus_ ..C..C..A..A...G....T..T..G........C.............AT..T............G.A...C.GC.T.T NC_037009.1_Notropis_heterolepis ..C..C..A..A...G....T..T.....T.....C..T.....G....AT............G..G.A..GC.....AT NC_037010.1_Rhinichthys_obtusus_ ..G..T..A......G.......G..G..T.....C..T..........A...G.....G......G.A...C..C.TAT NC_037014.1_Notropis_hudsonius_i ..G..C..A..A........T..T........C..A..T..G.......AT.....T..G......G.A...C.TC..CT NC_037015.1_Exoglossum_maxilling T.A..C..A..G...G.G.....T..G..T.....C..C.....G....A....A..........TG.A...C.GC..AT NC_054086.1_Ptychocheilus_lucius ..C..C..A..A...G....T..T..C...........C..G.......AT.....A........T..T...C..C..AT NC_054257.1_Gila_cypha_isolate_S ..C..C..A..A...G....T..T..C...........C..........A......A.....G..T.....GC..C...T NC_054259.1_Gila_nigrescens_isol ..C..C..A..A.C......T..T..C.....C.....C..........AT..C..A.....G.........C..C...T NC_054260.1_Hybognathus_amarus_i ..C..C..A..A..CG.T..T..C..G.....C..C..T..G..C....A...C.........GC.G.A...C..C.CAT NC_054262.1_Notropis_jemezanus_v ..C..C..A..A..CG....T..C..G.....C..C.............AT..C........G.....T..GC..C.C.T Pimephales_notatus_R2S3_________ ..A..C..A..A..CG.......T..C.....C..C..T........C.AT...A...........G.T...C..C.TAT Pimephales_tenellus_tenellu_R2S1 ..C..T..A..A...G....T..T..C........C..T..G.......AT.....G........TG.A...C..C.TAT Pimephales_tenellus_parvice_R2S2 ..C..C..A..A...G....T..T..C........C..T..G.......AT.....G.....G..TG.A...C..C.TAT Pimephales_notatus_R1S1_________ ..A..C..A..A..CG.......T..C.....C..C..T........C.AT...A...........G.T...C..C.TAT MG570452.1_Pimephales_promelas_i ..A..C..A..G..C........T..C.....C..C..T..........AT............GC.G.A..G...C.TAT MG570452.1_Pimephales_promelas_S ..A..C..A..T...........T..C.....C..C..T..........AT............GC.G.A......C.CAT AB626850.1_Megalobrama_terminali CCCTGCCTGACCACTGGCCGCAATATGATATATCTCAACCTTAGCAGAAACGAACCGAGCACCATTCGACCTAACAGAAG AP010779.1_Mylocheilus_caurinus_ ......A.....T..A.....G..G..G.....T......C.......G..C.....G.....C..............G. AP011215.1_Gila_sp._1460_mitocho ......A.....C..T.....G..................C..........T.....C........T..T.......... AP011263.1_Scardinius_erythropht ...C..A.....T...........................C.G..G..G..T...........C..T...T....C.... AP011267.1_Algansea_lacustris_mi ...C..A......T..........G..G..C.........C.T.....G..C..T........C..T.....G..G..G. AP011268.1_Yuriria_alta_mitochon ......A........A.....G..G.....C.....C..TC.T........C..T..C.....T..T..TT.G....... AP011273.1_Hybognathus_nuchalis_ ......A........A........G........T..C...C.T.....G..C..T..G.....C........G..G.... AP011274.1_Couesius_plumbeus_mit ......A.....C..A.....T.....G.....T......C..........T..T..G........T.....G..G..G. AP011275.1_Platygobio_gracilis_m ......A......T.A........G.....C.....C...C.G..G.....C...........T..T............. AP011277.1_Erimystax_dissimilis_ ......A.....CT.A...........G............C.G........T.....C.....C..T..TT.......G. AP011279.1_Pimephales_promelas_m T.....A.....T..A..T........G..C.....C..TC.T.....G..C..T..T.....T..T...........G. AP011280.1_Clinostomus_elongatus ......A.....CT.A...........G............C..........T.....G.....C..T..TT......... AP012079.1_Luxilus_chrysocephalu T.....A..G.....A..............C.........C.T.....G..T..T..G..C..C..T.....G.....G. AP012080.1_Macrhybopsis_gelida_m ......A........C.................T......C..........T..T........C..T..TT......... AP012083.1_Notropis_atherinoides A..C..G.....G..............G........G..TC.T........C..T..G.....C..T...........G. AP012084.1_Notropis_baileyi_mito A..C..A..G....................C.....C...C.T........C..T...A.G..C...........G.... AP012087.1_Cyprinella_galactura_ ......G.....T....................T.....TC.T........C..T.....G..C..T............. AP012088.1_Hybopsis_lineapunctat T.....A........A..T...........C.....T...C.T........T...........C..T...T......... AP012090.1_Luxilus_cornutus_mito ......A..G.....A.....G........C........TC.T..G..G..T..T..G..C..C..T........G..G. AP012091.1_Lythrurus_ardens_mito ......A........A.....C.....G............C.T.....G..C..T..G.....T..T...........G. AP012092.1_Lythrurus_fumeus_mito T.....G......T.A........................C.C.....G..C..T........T..T.....G.....G. AP012093.1_Lythrurus_lirus_mitoc ......A..G.....A.....C..G..............TC.T.....G..C..T........T..T............. AP012094.1_Lythrurus_umbratilis_ ......A........A.....C..................C.T.....G..C..T..G.....T..T...........G. AP012095.1_Macrhybopsis_meeki_mi T.....A........A........................C.......G..T..T........C..T..T........G. AP012097.1_Notropis_bifrenatus_m A.....A........A.......................TC.T........C..T........C..T..TT......... AP012098.1_Pimephales_sp._MCZunc ......A.....T..A..............C..T..T..TC.T.....G..T..T........T..T.....T....... AP012100.1_Notropis_telescopus_m ......A.....C..A.....T..............C...C.T.....G..C..T........C................ AP012101.1_Pimephales_notatus_mi ......A.....T..A..............C..T..T..TC.T.....G..T..T........T..T.....T....... AP012102.1_Pimephales_vigilax_mi T.....A..G..T..A..T...........C.....T..TC.T........T..T........T..T..TT......... AP012103.1_Pogonichthys_macrolep ......G..G..T..A..T..............T......C..........T...........C..T...........G. AP012106.1_Richardsonius_balteat ......A........A........G.....C.........C.......G..C...........T..T..TT......... AP012108.1_Notropis_chrosomus_mi ......A..G.....A..T.....G.....C.....C..TC.T..G.....C..T........C..T........G.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T.....A..G..T..A..T...........C.....T..TC.T........T..T........T..T..TT......... Pimephales_vigilax_R1S3_________ T.....A..G..T..A..T...........C.....T..TC.T........T..T........T..T..TT......... DQ536429.1_Notropis_stramineus_m T........G.....A..A........G..C.....C...C.T..G..G..C..T........C..T...T.......G. JX910141.1_Squaliobarbus_curricu ...C...........A..............C....................A............................ KC351187.1_Squaliobarbus_curricu ...C...........A..............C....................A............................ KT278765.1_Pimephales_promelas_m T.....A.....T..A..T...........C.....C..TC.T.....G..C..T..G.....T..T...T......... KT289925.1_Pimephales_promelas_m T.....A.....T..A..T...........C.....C..TC.T........C..T..G.....T..T............. KT424924.1_Rhinichthys_osculus_m ......A.....C...........................C....G..G..T.....C.....C..T..T........G. KU200257.1_Chanodichthys_ilishae ......A........A........................C..........T..............T...........G. MF972070.1_Siphateles_bicolor_mo ......A..G..C..C........G........T......C.G........T.....C........T..T..C.....G. MG570407.1_Notropis_chalybaeus_v A..C..A.....G..A....................C..TC.T........C..T.....C..T..T............. MG570408.1_Notropis_bifrenatus_v A.....A........A.......................TC.T........C..T........C..T..TT......... MG570413.1_Notropis_heterolepis_ ......A.......................C........TC.T.....G..C..T..G.....C..T........G.... MG570416.1_Rhinichthys_obtusus_v T.....A.....CT.A..............C.....C...C.G..C..G..T.....T.....C..T..TT......... MG570417.1_Rhinichthys_obtusus_v T.....A.....CT.A..............C.....C...C.G..C..G..T.....T.....C..T..TT......... MG570420.1_Pimephales_notatus_vo ......A.....T..A..............C..T..T..TC.T.....G..T..T........T..T.....T....... MG570443.1_Notropis_hudsonius_is ...A..A........T..A........G..C.....C..TC....T.....C..T..G.....C.....T..C.....G. MG570444.1_Rhinichthys_atratulus T.....A.....CT.A...........G..C..T..G...C....G..G..T.....G..G..C..T..TT.......G. MG570445.1_Rhinichthys_atratulus T.....A.....CT.A..............C..T..G...C....G..G..T.....G..G..C..T..TT.......G. MG570447.1_Luxilus_cornutus_isol ......A..G.....A.....G........C........TC.T.....G..T..T..G..C..C..T........G..G. MG570449.1_Luxilus_cornutus_isol ......A..G.....A.....G........C........TC.T.....G..T..T..G..C..C..T........G..G. MG570450.1_Pimephales_notatus_is ......A.....T..A..............C..T..T..TC.T.....G..T..T........T..T.....T....... MG570451.1_Notropis_bifrenatus_i A.....A..G.....A.......................TC.T........C..T........C..T..TT......... MG570453.1_Exoglossum_maxillingu ......A.....CT.A...........G............C.G........T.....C.....C..T..TT.......G. MG570454.1_Pimephales_promelas_i T.....A.....T..A..T...........C.....C..TC.T.....G..C..T..G.....T..T............. MG570455.1_Notropis_atherinoides A..C..G.....G..A....................G..TC.T........C..T..G.....C..T...........G. MG570456.1_Notropis_atherinoides A..C..G.....G..............G........G..TC.T........C..T..G.....C..T...T.......G. MG570457.1_Pimephales_notatus_is ......A.....T..A..............C..T..T..TC.T.....G..T..T........T..T.....T....... MG570458.1_Pimephales_notatus_is ......A.....T..A..............C..T..T..TC.T.....G..T..T........T..T.....T....... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v T..C..A..G........T...........C.....C..TC.T........C..T..C.....C..T...........G. MT364325.1_Hybognathus_amarus_mi ......A..G.....A.....G..G..G..C..T..C...C.C........C..T..G..G..C................ MT501368.1_Gila_cypha_isolate_SN ......A.....C..C.....G..................C..........T.....C.....C.....TT......... MT501369.1_Notropis_simus_pecose ......G........A...........G..C.....T...C.C..G..G..T..T.....G..C..T..T.....T..G. MT501378.1_Hybognathus_amarus_is ......A..G.....A.....G..G..G..C..T..C...C.C........C..T..G..G..C................ MT501385.1_Notropis_jemezanus_vo A..C..A.....C........G..G..............TC.T.....G..C..T..G.....C..T..TT....G.... MT501391.1_Rhinichthys_osculus_i ......A.....T...........G..G............C....C..G..T...........C..T...T....C..G. MT667239.1_Rhinichthys_osculus_t ......A.....T...........G..G............C....C..G..T...........C..T...T....G..G. MT667242.1_Luxilus_cornutus_vouc ......A..G.....A.....G........C........TC.T.....G..T..T..G..C..C..T........G..G. MW300340.1_Hybognathus_placitus_ T.....A..G..C..A...........G..C.........C.T.....G..C..T........C..T........G..G. MW300341.1_Hybognathus_placitus_ T.....A..G..C..A...........G..C.........C.T.....G..C..T.....G..C..T........G..G. NC_013763.1_Mylocheilus_caurinus ......A.....T..A.....G..G..G.....T......C.......G..C.....G.....C..............G. NC_033926.1_Opsopoeodus_emiliae_ T.....A.....C..A..A..............T..T..TC.T........T..T..T.....T..T..T........G. NC_037008.1_Notropis_chalybaeus_ A..C..A.....G..A....................C..TC.T........C..T.....C..T..T............. NC_037009.1_Notropis_heterolepis ......A.......................C........TC.T.....G..C..T..G.....C..T........G.... NC_037010.1_Rhinichthys_obtusus_ T.....A.....CT.A..............C.....C...C.G..C..G..T.....T.....C..T..TT......... NC_037014.1_Notropis_hudsonius_i ...A..A........T..A........G..C.....C..TC....T.....C..T..G.....C.....T..C.....G. NC_037015.1_Exoglossum_maxilling ......A.....CT.A...........G............C.G........T.....C.....C..T..TT.......G. NC_054086.1_Ptychocheilus_lucius ......A.....C..C.....G..................C.......G..T.....C........T..T.......... NC_054257.1_Gila_cypha_isolate_S ......A.....C..C.....G..................C..........T.....C.....C.....TT......... NC_054259.1_Gila_nigrescens_isol ......A.....C..C.....G..G..G............C..........T.....C........T..T.......... NC_054260.1_Hybognathus_amarus_i ......A..G.....A.....G..G..G..C..T..C...C.C........C..T..G..G..C................ NC_054262.1_Notropis_jemezanus_v A..C..A..G..C........G..G..............TC.T.....G..C..T..G.....C..T..TT....G.... Pimephales_notatus_R2S3_________ T.....A.....T..A.................T..T..TC.T........T..T........T..T...........G. Pimephales_tenellus_tenellu_R2S1 ......A.....T..A..T........G..C.....C..TC.T........C..T........C..T...T......... Pimephales_tenellus_parvice_R2S2 ......A..G..T..A..T.................C..TC.T........C..T........C..T...T......... Pimephales_notatus_R1S1_________ T.....A.....T..A.................T..T..TC.T........T..T........T..T...........G. MG570452.1_Pimephales_promelas_i T.....A.....T..A..T...........C.....C..TC.T.....G..C..T..G.....T..T............. MG570452.1_Pimephales_promelas_S T.....A.....T..A..T........G..C.....C..TC.T.....G..C..T..T.....T..T...........G. AB626850.1_Megalobrama_terminali GAGAATCAGAACTAGTCTCAGGTTTTAACGTAGAATATGCAGGAGGGCCCTTCGCTCTCTTCTTCCTGGCCGAATATGCA AP010779.1_Mylocheilus_caurinus_ .T...........C..T..G..C....................G........T..CT.A..T..............C..G AP011215.1_Gila_sp._1460_mitocho .T........G..T..A..G..C..C...........C..............T...T.G..T.....A............ AP011263.1_Scardinius_erythropht .T...........T..T.....C..C.................G..A..T.....C..A..T..............C..G AP011267.1_Algansea_lacustris_mi .C..G.....G..T........C..C..T..........................C..A..T...........G.....C AP011268.1_Yuriria_alta_mitochon .T...........T........C..C....................C.....T..CT.G..T.....C.....G..C..C AP011273.1_Hybognathus_nuchalis_ .T.....T.....T........C.....T.................C..T..T..C..A..T.....C........C..C AP011274.1_Couesius_plumbeus_mit ..........G..T..G.....C..C.....G...........T..A........C..G......T.A............ AP011275.1_Platygobio_gracilis_m .T..G.....G..T........C..C........G........T..C.....T...T.A..T.....C........C..C AP011277.1_Erimystax_dissimilis_ .T........G..T..G........C.....G..G.................T..C.....T.....A.....G...... AP011279.1_Pimephales_promelas_m .T..G........T........C.....T...........T..T..C.....T..CT.A..T.....C..T........C AP011280.1_Clinostomus_elongatus .T...........T..A.....A.....T.....G...........A.....T...T.G..T.................. AP012079.1_Luxilus_chrysocephalu .C..G........T..G.....C..C..T.....G...........C.....T..C..A.....T..C.....G..C..C AP012080.1_Macrhybopsis_gelida_m .C...........T..T.....G...........G...........C.....T..AT.G..T.....C...........C AP012083.1_Notropis_atherinoides .T...........T........C..C..T..C..G........G..C.....T..CT.A........T.....G..C..C AP012084.1_Notropis_baileyi_mito .T.....C.....T..A..........................G..C........CT.G..T.....A.....G..C..C AP012087.1_Cyprinella_galactura_ .T.....G..G...........C.....T..............G..C........CT.G..T.................C AP012088.1_Hybopsis_lineapunctat .C..G........T..T.....C.....T.....G........G..C.....T..CT.A..T.....C..T.....C..C AP012090.1_Luxilus_cornutus_mito .C.....G.....T.....G..C..C..T.................C.....T..C..A.....T..C..T..G..C..T AP012091.1_Lythrurus_ardens_mito .T........G..T.....C..C..C..T...........G.....T..T..T...T.A........C.....G..C..C AP012092.1_Lythrurus_fumeus_mito .T.....G..G..T.....G..C.....T........C.....G..T..T..T.....A........A........C..C AP012093.1_Lythrurus_lirus_mitoc .T..G.....G..T.....C..C..C..T.....G...........T..T..T..CT.A........C........C..C AP012094.1_Lythrurus_umbratilis_ .T........G..T.....C..C..C..T...........G.....T..T..T...T.A........C.....G..C..C AP012095.1_Macrhybopsis_meeki_mi .T...........T..T.............................C..A..T..AT.A........T...........T AP012097.1_Notropis_bifrenatus_m .T.....G..G..T..G.....C..C..T.....G........G..C.....T..CT.G..T.....T.....G..C..C AP012098.1_Pimephales_sp._MCZunc .T..G.....G..T........G.....T..............G..C.....T..C..A........C..T.....C..C AP012100.1_Notropis_telescopus_m .T...........C........C.....T..G...........G..C.....T..CT.A..T.....C..T.....C..C AP012101.1_Pimephales_notatus_mi .T..G.....G..T........G.....T..............G..C.....T..C..G..T.....C........C..C AP012102.1_Pimephales_vigilax_mi .T...........T..A.....C..C..T..............T..C........C..A..T.....T........CA.T AP012103.1_Pogonichthys_macrolep .T...........T..T.....C..C....................A.....T..CT.G..T...........G..C... AP012106.1_Richardsonius_balteat .T..G.....G..T..G.....A.....T.....G........G..A.....T..CT.G..T...........G.....G AP012108.1_Notropis_chrosomus_mi .C...........T........C.....T.................C........CT.A..T.....C..A..G..C..C AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .T...........T..A.....C..C..T..............T..C........C..A..T.....T........CA.T Pimephales_vigilax_R1S3_________ .T...........T..A.....C..C..T..............T..C........C..A..T.....T........CA.T DQ536429.1_Notropis_stramineus_m .T.....G..G..T........A.....T.....G..C.....G..C.....T..CT.A..T.....C........C..C JX910141.1_Squaliobarbus_curricu ......................A..C.................G..A.....T..CT.A..T.....A............ KC351187.1_Squaliobarbus_curricu ......................A..C.................G..A.....T..CT.A..T.....A............ KT278765.1_Pimephales_promelas_m .T...........T........C.................T..T..C.....T..CT.A..T.....C..T........C KT289925.1_Pimephales_promelas_m .T..G........T........C.....T...........T..T..C.....T..CT.A..T.....C..T........C KT424924.1_Rhinichthys_osculus_m .T........G..T..T.....C..C..............G..G........T..C..G........C........C... KU200257.1_Chanodichthys_ilishae .G.................G..C..C....................A........C..T.................C... MF972070.1_Siphateles_bicolor_mo .T...........T..A..G.....C....................A.....T.....G..T.....A............ MG570407.1_Notropis_chalybaeus_v .T...........T........C.....T.................T..A.....CT.A..T.....C........C..C MG570408.1_Notropis_bifrenatus_v .T.....G..G..T..G.....C..C..T.....G........G..C.....T..CT.G..T.....T.....G..C..C MG570413.1_Notropis_heterolepis_ .C.....G..G..T..T.....C..C..T..G..............C.....T..CT.G..T.....A.....G..C..C MG570416.1_Rhinichthys_obtusus_v .T...........C..A..C..C..............C..G..T..A........C..G..T..T..C.....G..C... MG570417.1_Rhinichthys_obtusus_v .T...........C..A..C..C..............C..G..T..A........C..G..T..T..C.....G..C... MG570420.1_Pimephales_notatus_vo .T..G.....G..T........G.....T..............G..C.....T..C..A........C..T.....C..C MG570443.1_Notropis_hudsonius_is .C........G..T........A.....T..G...........T..A.....T..CT.A..T.....A..T..G...... MG570444.1_Rhinichthys_atratulus .T..G..G.....T.....G..C.....T........C.....C...........C..A..T..T..C.....G..C... MG570445.1_Rhinichthys_atratulus .T..G..G.....T.....G..C.....T........C.....C...........C..A..T..T..C.....G..C... MG570447.1_Luxilus_cornutus_isol .C.....G.....T.....G..C..C..T.................C.....T..C..A.....T..C..T..G..C..T MG570449.1_Luxilus_cornutus_isol .C.....G.....T.....G..C..C..T.................C.....T..C..A.....T..C..T..G..C..T MG570450.1_Pimephales_notatus_is .T..G.....G..T........G.....T..............G..C.....T..C..A........C..T.....C..C MG570451.1_Notropis_bifrenatus_i .T.....G..G..T..G.....C..C..T.....G........G..C.....T..CT.G..T.....T.....G..C..C MG570453.1_Exoglossum_maxillingu .T........G..T..G........C.....G..G.................T..C.....T.....A.....G...... MG570454.1_Pimephales_promelas_i .T..G........T........C.....T...........T..T..C.....T..CT.A..T.....C..T........C MG570455.1_Notropis_atherinoides .T...........T........C..C..T..T..G........G..C.....T..CT.A........C.....G..C..C MG570456.1_Notropis_atherinoides .T...........T........C..C..T..C..G........G..C.....T..CT.A........T.....G..C..C MG570457.1_Pimephales_notatus_is .T..G.....G..T........G.....T..............G..C.....T..C..A........C..T.....C..C MG570458.1_Pimephales_notatus_is .T..G.....G..T........G.....T..............G..C.....T..C..A........C..T.....C..C MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .C...........T........C.....T.....G........G..T..T..TA.CT.A..T.....T..A.....C..C MT364325.1_Hybognathus_amarus_mi .T.....T.....T.....G..C.....T...........G.....C.....T..CT.A..T.....C........C..C MT501368.1_Gila_cypha_isolate_SN .T........G..T..A..G..C..............C........A.....T...T.A..T.....A............ MT501369.1_Notropis_simus_pecose .T..G........T.....C........T..G..G.....G..T..C.....T..CT.A..T.....C..G..G..C..C MT501378.1_Hybognathus_amarus_is .T.....T.....T.....G..C.....T...........G.....C..T..T..CT.A..T.....C........C..C MT501385.1_Notropis_jemezanus_vo .T.....G.....T.....T..C..C..T..C...........G..C.....T..CT.G..T.....C.....G..C..C MT501391.1_Rhinichthys_osculus_i .T..G..G.....T........C..C..............G..G........T..C..G..T.....T........C... MT667239.1_Rhinichthys_osculus_t .T..G..G.....T........C..C..............G..G..A.....T..C..G..T.....T........C... MT667242.1_Luxilus_cornutus_vouc .C.....G.....T.....G..C..C..T.................C.....T..C..A.....T..C..T..G..C..T MW300340.1_Hybognathus_placitus_ .T.....C.....T........C.....T.....G........G..T.....T..CT.G........C.....G..C..C MW300341.1_Hybognathus_placitus_ .T.....C.....T........C.....T..............G..T.....T..CT.G........C.....G..C..C NC_013763.1_Mylocheilus_caurinus .T...........C..T..G..C....................G........T..CT.A..T..............C..G NC_033926.1_Opsopoeodus_emiliae_ .T...........T........C..C..T.....G..C........T........CT.A..T.....C........C..C NC_037008.1_Notropis_chalybaeus_ .T...........T........C.....T.................T..A.....CT.A..T.....C........C..C NC_037009.1_Notropis_heterolepis .C.....G..G..T..T.....C..C..T..G..............C.....T..CT.G..T.....A.....G..C..C NC_037010.1_Rhinichthys_obtusus_ .T...........C..A..C..C..............C..G..T..A........C..G..T..T..C.....G..C... NC_037014.1_Notropis_hudsonius_i .C........G..T........A.....T..G...........T..A.....T..CT.A..T.....A..T..G...... NC_037015.1_Exoglossum_maxilling .T........G..T..G........C.....G..G.................T..C.....T.....A.....G...... NC_054086.1_Ptychocheilus_lucius .T...........T..G.....C..C........G..C........A.....T...T.G....................G NC_054257.1_Gila_cypha_isolate_S .T........G..T..A.....C..............C........A.....T...T.A..T.....A............ NC_054259.1_Gila_nigrescens_isol .T..G.....G..T..A..G..C..C...........C.....G..T.....T...T.G..T.....A............ NC_054260.1_Hybognathus_amarus_i .T.....T.....T.....G..C.....T...........G.....C..T..T..CT.A..T.....C........C..C NC_054262.1_Notropis_jemezanus_v .T.....G.....T.....T..C..C..T..C...........G..C.....T..CT.G..T.....C.....G..C..C Pimephales_notatus_R2S3_________ .T..G.....G..T........G..............C.....G..C.....T..C..G..T.....A........C..C Pimephales_tenellus_tenellu_R2S1 .T...........T.....G..C.....T...........C..G..T.....T..CT.A..T.....C........C..T Pimephales_tenellus_parvice_R2S2 .T...........T.....G..A.....T.....G.....C.....T.....T..CT.A..T.....C........C..T Pimephales_notatus_R1S1_________ .T..G.....G..T........G..............C.....G..C.....T..C..G..T.....A........C..C MG570452.1_Pimephales_promelas_i .T..G........T........C.....T...........T..T..C.....T..CT.A..T.....C..T........C MG570452.1_Pimephales_promelas_S .T..G........T........C.....T...........T..T..C.....T..CT.A..T.....C..T........C AB626850.1_Megalobrama_terminali AACATCCTATTAATGAATACCTTATCAGCCGTACTATTCCTAGGGACATCACACATCCACCACATCCCAGAATTAACAAC AP010779.1_Mylocheilus_caurinus_ ..T..TT.......A..C...C.C..C.....GT....T.....A......T.TT.T.CAGG.GCG..C..GC..G.... AP011215.1_Gila_sp._1460_mitocho .....TT.......A......C.G..CA....GT....TA.G............T...CGGG...G.....G..G..G.. AP011263.1_Scardinius_erythropht ..T...T.GC.C.........C.T..G..T..G.....TT....A.....C..TT.TACGGGT..A..G...C....... AP011267.1_Algansea_lacustris_mi ........TC.C..A......C.C..G............T.......C..GT.TT.T.CAGC...T..C...C.C..CT. AP011268.1_Yuriria_alta_mitochon .........C.G..A......C.C..C...........TT....A......A.TT.T.C.GC...A..C...C.T..T.. AP011273.1_Hybognathus_nuchalis_ .....TT.GC....A......C.C..C..T...........G.........T.TT.T.CGGCTG.A..C..G..G..C.. AP011274.1_Couesius_plumbeus_mit .....TT..C....A......C.G.........T....T.....C..T..CA.TT.T.C.GC...G.....G........ AP011275.1_Platygobio_gracilis_m ..T..T.....G..A.....TC.C..C.....G.....TT..........GT..T.T.CAGG...G..C...C.C..... AP011277.1_Erimystax_dissimilis_ ..T..TT..C...........C....C...A.C..C..TT....C..C...T.TT.T.CAA....A.....GC....... AP011279.1_Pimephales_promelas_m ..T..T...C....A......C.C..C.....GT....T.....A......T.TT.T.CGGCTG.A..T...C....T.. AP011280.1_Clinostomus_elongatus ..T..............C...C....CA..A.CT.G...T....C......T.TT.T.CAGG.G.A.............. AP012079.1_Luxilus_chrysocephalu ......T..C....A......C.C..T.....G..G..TT.G..A......T..T.T.CAGC.G.A..C........C.. AP012080.1_Macrhybopsis_gelida_m ..T..T........A......C.T..T............T....A......A.TT.T.CTA.TC.T..T........... AP012083.1_Notropis_atherinoides ..T...T.GC....A......C.C..C.....G..G..TT.G........TT..T.T.CAGCTG.A..C...C.C..C.. AP012084.1_Notropis_baileyi_mito ..T...T.......A......C.C...........C..TT....A..G..CT.TT.T.CAGC...A..T......G.C.. AP012087.1_Cyprinella_galactura_ ......T..C.......C...C.C..T..A...........C..A..G..CT..T.T..AGCT..T..T...C....C.. AP012088.1_Hybopsis_lineapunctat ..T..T..GC....A......C.C..C.....C...........A......T.TT.T.CAGC.T.A......C....C.. AP012090.1_Luxilus_cornutus_mito ......T.GC....A......C.C..C.....G.....TT....A......T..T.T.CAGC.G.A..C..GC.G..C.. AP012091.1_Lythrurus_ardens_mito ......T.......A..C...C.C..T.....G..G..TA..........GT.TT.T.CAGCTG....T...C.GG.C.. AP012092.1_Lythrurus_fumeus_mito ..T...T.......A......C.C..C.....GT....T.....A.....TT..T.T.CAGC......C...C.C..C.. AP012093.1_Lythrurus_lirus_mitoc ......T.G.....A......C.C..T.....G..G..T...........GT.TT.T.CAGCT.....T...C.G..C.. AP012094.1_Lythrurus_umbratilis_ ......T.......A..C...C.C..T.....G..G..TA..........GT.TT.T.CAGCTG....T...C.GG.C.. AP012095.1_Macrhybopsis_meeki_mi ..T..T........A......C.T..C..T.........T...........A.TT.T.CTA.TT....T...C...T... AP012097.1_Notropis_bifrenatus_m ..T..TT.......A..C..TC....T.....G.....TT...........T.TT.T.CGGCTG.A..T..GC....C.. AP012098.1_Pimephales_sp._MCZunc ..T..TT..C.G..A..C...C.C..C.....GT.G..TT....A.....TT.TT.T.CAGCTG.A..C...C....T.. AP012100.1_Notropis_telescopus_m ......T..C....A......C.T..C.....G..G..T..C..A......T..T...CAGCTG.G..C..GC....C.. AP012101.1_Pimephales_notatus_mi ..T..TT..C.G..A......C.C..C.....GT....TT....A.....TT.TT.T.CAGCTG.A..C...C.G..T.. AP012102.1_Pimephales_vigilax_mi ......T..C....A......C.C..C...A..T....T.....A.....TT.TT..TCAGCTT.A..T...C.C..T.. AP012103.1_Pogonichthys_macrolep ..T..TT.......A..C..TC.G..C......T.G..T.....A.....GT.TT.T.CAGGTGCA..T...C.G..... AP012106.1_Richardsonius_balteat .....T..GC....A..C...C.G..C.....C..G..TT..........GT..T.T.CGGG...A..G.....G..... AP012108.1_Notropis_chrosomus_mi ......T..C.G..A......C.C.....T..G..C..TT.G..A.....GT.TT.T.CAGC.G.A..T...C.TG.C.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ......T..C....A......C.C..C...A..T....T.....A.....TT.TT..TCAGCTT.A..T...C.C..T.. Pimephales_vigilax_R1S3_________ ......T..C....A......C.C..C...A..T....T.....A.....TT.TT..TCAGCTT.A..T...C.C..T.. DQ536429.1_Notropis_stramineus_m .....TT..C....A..C..TC.T..C.....CT.G..TT....A.....GT.TT.T.CGGC...G..C..GC.G..C.. JX910141.1_Squaliobarbus_curricu .....T........A..C....................T.....A.....G.....T...............C....... KC351187.1_Squaliobarbus_curricu .....T........A..C....................T.....A...........T...............C....... KT278765.1_Pimephales_promelas_m ..T..T...C....A......C.C..C......T....T.....A......T.TT.T.CAGCTG.A..T...C....C.. KT289925.1_Pimephales_promelas_m ..T..T...C....A......C.C..C.....GT....T.....A......T.TT.T.CGGCTG.A..T...C....T.. KT424924.1_Rhinichthys_osculus_m ..T...T..C.C.........C.C..CA.T..C..G..TT....A.....GT.TT.T.C.AG...G.....GC....... KU200257.1_Chanodichthys_ilishae ..............A......C.......T..............A...........................C....... MF972070.1_Siphateles_bicolor_mo .....TT..C...........C.G..C......T....TA.G..A.....G...T.T.CAGGT..G.............. MG570407.1_Notropis_chalybaeus_v ......T.......A......C.C...........C...T....A......T.TT.T.C.GCTG.A..T........C.. MG570408.1_Notropis_bifrenatus_v ..T..TT.......A..C..TC....T.....G.....TT...........T.TT.T.CGGCTG.A..T..GC....C.. MG570413.1_Notropis_heterolepis_ ......T.GC....A..C...C.C..C.....G..C........A......T..T...CTGCTG.G..C...C....C.. MG570416.1_Rhinichthys_obtusus_v ..T..TT.G.....A.....TC....T.....C..G..TT....A......T.TT.T.CTGG...G.....GC....... MG570417.1_Rhinichthys_obtusus_v ..T..TT.G.....A.....TC....T.....C..G..TT....A......T.TT.T.CTGG...G.....GC....... MG570420.1_Pimephales_notatus_vo ..T..TT..C.G..A..C...C.C..C.....GT.G..TT....A.....TT.TT.T.CAGCTG.A..C...C....T.. MG570443.1_Notropis_hudsonius_is ..T...T..........C..AC.C..C.....TT....TT....A......T.TT.T.C.AC...A..T........... MG570444.1_Rhinichthys_atratulus ..T..TT....G.....C..TC.G..T.....C..G..TT...........T.TT...C.AG...G.....GC....... MG570445.1_Rhinichthys_atratulus ..T..TT..........C..TC.G..T.....C..G..TT....A......T.TT...C.GG...G.....GC....... MG570447.1_Luxilus_cornutus_isol ......T.GC....A......C.C..C.....G.....TT....A......T.TT.T.CAGC.G.A..C..GC.G..C.. MG570449.1_Luxilus_cornutus_isol ......T.GC....A......C.C..C.....G.....TT....A......T.TT.T.CAGC.G.A..C..GC.G..C.. MG570450.1_Pimephales_notatus_is ..T..TT..C.G..A..C...C.C..C.....GT.G..TT....A.....TT.TT.T.CAGCTG.A..C...C....T.. MG570451.1_Notropis_bifrenatus_i ..T..TT.......A..C..TC....T.....G.....TT...........T.TT.T.CGGCTG.A..T..GC....C.. MG570453.1_Exoglossum_maxillingu ..T..TT..C...........C....C...A.C..C..TT....C..C...T.TT.T.CAA....A.....GC....... MG570454.1_Pimephales_promelas_i ..T..T...C....A......C.C..C.....CT....T.....A......T.TT.T.CGGCTG.A..T...C....T.. MG570455.1_Notropis_atherinoides ......T.GC....A......C.C..C.....G..G..T..G........TT..T.T.CAGCTG.A..C...C.C..C.. MG570456.1_Notropis_atherinoides ..T...T.GC....A......C.C..C.....G..G..TT.G........TT..T.T.CAGCTG.A..C...C.C..C.. MG570457.1_Pimephales_notatus_is ..T..TT..C.G..A..C...C.C..C.....GT.G..TT....A.....TT.TT.T.CAGCTG.A..C...C....T.. MG570458.1_Pimephales_notatus_is ..T..TT..C.G..A..C...C.C..C.....GT.G..TT....A.....TT.TT.T.CAGCTG.A..C...C....T.. MK421554.1_Parabramis_pekinensis ..............................................................T................. MT333789.1_Notropis_lutipinnis_v .....TT.G........C...C.C..G..T.....C..TT....A.....GT..T...CGGCT..A..T...C..GGC.. MT364325.1_Hybognathus_amarus_mi ......T..C....A......C.C..C.....G........G.........T.TT.T.CGGCTG.A..C..G..G..C.. MT501368.1_Gila_cypha_isolate_SN ..T...T.G.....A..C...C....C......T....TA.G............T...CGGG...G.............. MT501369.1_Notropis_simus_pecose ..T..TT..C.T.....C...C.C........G..C..TT...........T.TT...CGGCTC.G..C...C..G.T.. MT501378.1_Hybognathus_amarus_is ......T..C...........C.C..C.....G........G.........T.TT.T.CGGCTG.A..C..G..G..C.. MT501385.1_Notropis_jemezanus_vo ..T...T.GC.G..A......C.C..C.....G..G..TT....A..G..TT..T.T.CAGCTG....C...C.C..C.. MT501391.1_Rhinichthys_osculus_i ..T..TT..C...........C....C..T..C..G..TT....A.....GT.TT.T.CAGG...G.....GC....... MT667239.1_Rhinichthys_osculus_t ..T..TT..C...........C....C..T..C..G..TT....A.....GT.TT.T.CAGG...G.....GC..G.... MT667242.1_Luxilus_cornutus_vouc ......T.GC....A......C.C..C.....G.....TT....A......T.TT.T.CAGC.G.A..C..GC.G..C.. MW300340.1_Hybognathus_placitus_ .....TT.......A..C...C.C..C.....G..G.....T..A.....GT.TT.T.CAGCTC.G..C..G..G..T.. MW300341.1_Hybognathus_placitus_ .....TT.......A..C...C.C..C.....G..G.....T..A.....GT.TT.T.CAGCTC.G..C..G..G..T.. NC_013763.1_Mylocheilus_caurinus ..T..TT.......A..C...C.C..C.....GT....T.....A......T.TT.T.CAGG.GCG..C..GC..G.... NC_033926.1_Opsopoeodus_emiliae_ ..T..T...C....A..C..TC.C..CA..........TT....T......T.TT...CAGCAG.T..T...C....C.. NC_037008.1_Notropis_chalybaeus_ ......T.......A......C.C...........C...T....A......T.TT.T.C.GCTG.A..T........C.. NC_037009.1_Notropis_heterolepis ......T.GC....A..C...C.C..C.....G..C........A......T..T...CTGCTG.G..C...C....C.. NC_037010.1_Rhinichthys_obtusus_ ..T..TT.G.....A.....TC....T.....C..G..TT....A......T.TT.T.CTGG...G.....GC....... NC_037014.1_Notropis_hudsonius_i ..T...T..........C..AC.C..C.....TT....TT....A......T.TT.T.C.AC...A..T........... NC_037015.1_Exoglossum_maxilling ..T..TT..C...........C....C...A.C..C..TT....C..C...T.TT.T.CAA....A.....GC....... NC_054086.1_Ptychocheilus_lucius .....T........A..C...C....C.....G.....TA..............T...CGGG...A........G..... NC_054257.1_Gila_cypha_isolate_S ..T...T.G.....A..C...C....C......T....TA.G............T...CGGG...G.............. NC_054259.1_Gila_nigrescens_isol .....TT.......A......C.G..C.....GT.G..TA.G............T.T.CAGG...G.............. NC_054260.1_Hybognathus_amarus_i ......T..C....A......C.C..C.....G........G........GT.TT.T.CGGCTG.A..C..G..G..C.. NC_054262.1_Notropis_jemezanus_v ..T...T.GC.G..A......C.C..C.....G..G..TT....A..G..TT..T.T.CAGCTG....C...C.C..C.. Pimephales_notatus_R2S3_________ ..T..T...C....A..C...C.C..C......T.G..TT....A.....TT.TT.T.CAGC.G.A..C...C....T.. Pimephales_tenellus_tenellu_R2S1 ..............A..C...C.G..C......T....TT.C.........T.TT.T.CAGCT..A..T...C.G..T.. Pimephales_tenellus_parvice_R2S2 ..............A..C...C.G..C......T....TT.C.........T.TT.T.CAGCT..A..T...C.G..T.. Pimephales_notatus_R1S1_________ ..T..T...C....A..C...C.C..C......T.G..TT....A.....TT.TT.T.CAGC.G.A..C...C....T.. MG570452.1_Pimephales_promelas_i ..T..T...C....A......C.C..C.....CT....T.....A......T.TT.T.CGGCTG.A..T...C....T.. MG570452.1_Pimephales_promelas_S ..T..T...C....A......C.C..C.....GT....T.....A......T.TT.T.CGGCTG.A..T...C....T.. AB626850.1_Megalobrama_terminali AATTAGCCTTATAACTAAAGCTGCACTACTGTCTATCGTATTCCTATGGGTACGAGCCTCATACCCACGATTCCGATACG AP010779.1_Mylocheilus_caurinus_ ....G.T.......T......C...T.TT.A..GG.G...........A..C..G.....C........C..T..G.... AP011215.1_Gila_sp._1460_mitocho G..CG.T..A..G.T...G..C...T..T.A...G.AA..........A..C..G..T..T..T.....G..T..G.... AP011263.1_Scardinius_erythropht ....G.T.....GGT......C...T.T..C..GG.TA.G........A..C..G.....T.....T...........T. AP011267.1_Algansea_lacustris_mi G...G....G...GT......C.....TT.A..CG.AC.............C........C..............G.... AP011268.1_Yuriria_alta_mitochon ....G.T..A...TT......C.....TT.A...G.AA......................T........G........T. AP011273.1_Hybognathus_nuchalis_ T...G....A....T...G..C..C..TT.A...G.AA.G..T..G..A..G........T................... AP011274.1_Couesius_plumbeus_mit ....G.T...........G..C...T.TT.A..GG..A....T.....A.....G.....G.....T..G..T.....T. AP011275.1_Platygobio_gracilis_m GG..G..T.A..G.T......C.....T......G.A..G..T........G........T........G.....G.... AP011277.1_Erimystax_dissimilis_ ....G.T.....G.TC..G..CA..T.TT.A..CG.AA.............C..G.....C.....C........G.... AP011279.1_Pimephales_promelas_m G...G....G..G.T......C..GT.T..T...G.AC.......C..A.....C.....C..............C..T. AP011280.1_Clinostomus_elongatus ....G.TA....GGT......C...T.TT....CG.G..G........A..T........C........G..T..G..T. AP012079.1_Luxilus_chrysocephalu .G..G..T.A....T......CA.G..TT.A...G.G.....T.....A.....G.....T........C.......... AP012080.1_Macrhybopsis_gelida_m ....G....AGCCCTC.....C.....TT.A..AG.A.....TT....A...........C.................T. AP012083.1_Notropis_atherinoides ....G....A..G.TC.....C..C..CT.A..CG.G.....T.....A...........T........G..T.....T. AP012084.1_Notropis_baileyi_mito .G.CG....G..G.TC..G..C.....TT.A..CG.A........T..A..G..G.....T.....T...........T. AP012087.1_Cyprinella_galactura_ ....G.A........C.....C.....G..C...G.AA.G........A..G..G.....T.....G...........T. AP012088.1_Hybopsis_lineapunctat T..CG....A....TC.....C.....T..A...G.GA.G..TT.G..A...........T........G.......... AP012090.1_Luxilus_cornutus_mito TC..G..T.A....TC.....C.....TT.A...G.A.....T..T..A..T..G.....T..T.....C.......... AP012091.1_Lythrurus_ardens_mito .G..G....A..G.TC..G..C.....T..A...G.T.....T..C..A...........T...........T.....T. AP012092.1_Lythrurus_fumeus_mito ....G....G..G.T......C..G..TT.....G..A..........A..G........T..T..G..G..T..G.... AP012093.1_Lythrurus_lirus_mitoc GG..G.......G.TC..G..C.....T..A...G..T....T...........G.....T...........T.....T. AP012094.1_Lythrurus_umbratilis_ .G..G....A..G.TC..G..C.....T..A.....T.....T..C..A...........T...........T.....T. AP012095.1_Macrhybopsis_meeki_mi ....G.....GCCCT......C.....TT.A..AG.AA....T.....A...........C.................T. AP012097.1_Notropis_bifrenatus_m ....G....A...CT......C.....T..A...G.AT..........A...........T.....C...........T. AP012098.1_Pimephales_sp._MCZunc .G..G....A....T......C.....T..A...G.A..G..T..C........G.....T..T..G..G..T..G.... AP012100.1_Notropis_telescopus_m G...G....A....T......C..C..C..A...G.GA....T..G.....G..............G.....T.....T. AP012101.1_Pimephales_notatus_mi .G..G....A....T......C.....T..A...G.A.....T..C..A.....G.....T..T.....G..T..G.... AP012102.1_Pimephales_vigilax_mi .G.CG....A....TA.....C.....T......G.GC.......C..A.......................T..C..T. AP012103.1_Pogonichthys_macrolep ...CG.T.....GGT......C...T.TT.A..AG.A........G..A..C..G.....C.....C..C..T..G.... AP012106.1_Richardsonius_balteat ....G.T.......T...G..C...T.TT.A..CG.GA.......C..A..C........C.....G.....T.....T. AP012108.1_Notropis_chrosomus_mi .G..G....G..G.T...G..C...T.CT.A...G.T........G..A..C........T.....G..G.....G..T. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .G.CG....A....TA.....C.....T......G.GC.......C..A.......................T..C..T. Pimephales_vigilax_R1S3_________ .G.CG....A....TA.....C.....T......G.GC.......C..A.......................T..C..T. DQ536429.1_Notropis_stramineus_m .G..G.A..A...G....G..C..C..TT.A..GG.A..G.....T.....C..G.....C........G........T. JX910141.1_Squaliobarbus_curricu .........C..G........C........A........G........A.....G.....T.................T. KC351187.1_Squaliobarbus_curricu .........C..G........C........A........G........A.....G.....T.................T. KT278765.1_Pimephales_promelas_m ....G....G....T......C...T.T..T...G.A........C..A.....C.....T..T...........C..T. KT289925.1_Pimephales_promelas_m G...G....A..G.T......C..GT.T..T...G.AC.......C..A.....C.....C..T...........C..T. KT424924.1_Rhinichthys_osculus_m ......T.......TC..G..C...T.TT.A..CG.TA.....T.......C........C.................T. KU200257.1_Chanodichthys_ilishae ...C.................C........T.....T...........A...........G..............G..T. MF972070.1_Siphateles_bicolor_mo ....G....A..G.T......C......T.A...G.A...........A..T..G..T..T........G..T..G..T. MG570407.1_Notropis_chalybaeus_v C...G....A....T......C.....TT.A...G.A........T..A...........T..T..............T. MG570408.1_Notropis_bifrenatus_v ....G....A...CT......C.....T..A...G.AT..........A...........T.....C...........T. MG570413.1_Notropis_heterolepis_ ...CG....A....T......C.....GT.A...G.A.....T.................T.....G............. MG570416.1_Rhinichthys_obtusus_v GG..G.........T...G..C.....CT....CG.AA.....T.......C..G.....C..T..G.....T..G.... MG570417.1_Rhinichthys_obtusus_v GG..G.........T...G..C.....CT....CG.AA.....T.......C..G.....C..T..G.....T..G.... MG570420.1_Pimephales_notatus_vo .G..G....A....T......C.....T..A...G.A..G..T..C........G.....T..T..G..G..T..G.... MG570443.1_Notropis_hudsonius_is T...GC...A..GG.......C.....TT.A...G....G.....C..A.................G........C.... MG570444.1_Rhinichthys_atratulus GG..G.........T...G..CA....CT....CG.AA.....T.G.....C........C..T..G.....T.....T. MG570445.1_Rhinichthys_atratulus GG..G.........T...G..CA....CT....CG.AA.....T.G.....C........C..T..G.....T.....T. MG570447.1_Luxilus_cornutus_isol TC..G..T.A....TC.....C.....TT.A...G.A.....T..T..A..C..G.....T..T.....C.......... MG570449.1_Luxilus_cornutus_isol TC..G..T.A....TC.....C.....TT.A...G.A.....T..T..A..C..G.....T..T.....C.......... MG570450.1_Pimephales_notatus_is .G..G....A....T......C.....T..A...G.A..G..T..C........G.....T..T..G..G..T..G.... MG570451.1_Notropis_bifrenatus_i ....G....A....T......C.....T..A...G.AT..........A...........T.....C...........T. MG570453.1_Exoglossum_maxillingu ....G.T.....G.TC..G..CA..T.TT.A..CG.AA.............C..G.....C.....C........G.... MG570454.1_Pimephales_promelas_i G...G....A..G.T......C..GT.T..T...G.AC.......C........C.....C..T...........C..T. MG570455.1_Notropis_atherinoides ...CG....A..G.TC.....C..C..CT.A..CG.G.....T.....A...........T........G..T.....T. MG570456.1_Notropis_atherinoides ....G....A..G.TC.....C..C..CT.A..CG.G.....T.....A...........T........G..T.....T. MG570457.1_Pimephales_notatus_is .G..G....A....T......C.....T..A...G.A..G..T..C........G.....T..T..G..G..T..G.... MG570458.1_Pimephales_notatus_is .G..G....A....T......C.....T..A...G.A..G..T..C........G.....T..T..G..G..T..G.... MK421554.1_Parabramis_pekinensis ................................................A............................... MT333789.1_Notropis_lutipinnis_v ...CG....A...........C.....TT.....G.AA.......G...A.C..C........T.....T........T. MT364325.1_Hybognathus_amarus_mi T...G....A....T...G..C..C..TT.....G.A..G..T...........G.....T........G.......... MT501368.1_Gila_cypha_isolate_SN ...C..T..A....T......C......T.A...G.G...........A..C..G..T..T..T........T.....T. MT501369.1_Notropis_simus_pecose ...CG.G..A..G.T...G..C.....T..A...G.AA.G........A..C..G.....T.....T..G........T. MT501378.1_Hybognathus_amarus_is T...G....A....T...G..C..C..TT.....G.A..G..T........G..G.....T........G.......... MT501385.1_Notropis_jemezanus_vo G...G....A...GTC..G..C..C..CT.A...G.G..G..T.....A..G........T........G..T.....T. MT501391.1_Rhinichthys_osculus_i G.....T.....GGTC..G..C...T.TT.A..CG.TA.G...T.G..A..C........C........G........T. MT667239.1_Rhinichthys_osculus_t G.....T.....GGTC..G..C...T.TT.A..CG.TA.G...T.G..A..C........C........G.....G..T. MT667242.1_Luxilus_cornutus_vouc TC..G..T.A....TC.....C.....TT.A...G.A.....T..T..A..C..G.....T..T.....C.......... MW300340.1_Hybognathus_placitus_ ....G....A..G.TC..G..C..G..T.....CG.A..G...........G........T................... MW300341.1_Hybognathus_placitus_ ....G....A..G.TC..G..C..G..T.....CG.A..G....................T................... NC_013763.1_Mylocheilus_caurinus ....G.T.......T......C...T.TT.A..GG.G...........A..C..G.....C........C..T..G.... NC_033926.1_Opsopoeodus_emiliae_ G....T.T.A....T...G..C........A...G.AC.G.....T..............T.................T. NC_037008.1_Notropis_chalybaeus_ C...G....A....T......C.....TT.A...G.A........T..A...........T..T..............T. NC_037009.1_Notropis_heterolepis ...CG....A....T......C.....GT.A...G.A.....T.................T.....G............. NC_037010.1_Rhinichthys_obtusus_ GG..G.........T...G..C.....CT....CG.AA.....T.......C..G.....C..T..G.....T..G.... NC_037014.1_Notropis_hudsonius_i T...GC...A..GG.......C.....TT.A...G....G.....C..A.................G........C.... NC_037015.1_Exoglossum_maxilling ....G.T.....G.TC..G..CA..T.TT.A..CG.AA.............C..G.....C.....C........G.... NC_054086.1_Ptychocheilus_lucius ....G....A....T......C...T..T.A...G.AA.G........AA.C..G..T..T..T........T..G..T. NC_054257.1_Gila_cypha_isolate_S ...C..T..A....T......C......T.A...G.G...........A..C..G..T..T..T........T.....T. NC_054259.1_Gila_nigrescens_isol ....G....A....T......C...T..T.A...G.AA.G........A..C..G..T..T..T........T.....T. NC_054260.1_Hybognathus_amarus_i T...G....A....T...G..C..C..TT.....G.A..G..T........G..G.....T........G.......... NC_054262.1_Notropis_jemezanus_v G...G....A...GTC..G..C..C..CT.A...G.A..G..T.....A..G........T........G..T.....T. Pimephales_notatus_R2S3_________ ....G....A....T......C.....T......G.A.....T..C..A...........T..T...........G.... Pimephales_tenellus_tenellu_R2S1 ....G....A....T.........G..T......G.A..C.....C..A...........T..T..G.....T.....T. Pimephales_tenellus_parvice_R2S2 G...G....A....T.........G..T..A...G.A..C.....C..A...........T..T........T.....T. Pimephales_notatus_R1S1_________ ....G....A....T......C.....T......G.A.....T..C..A...........T..T...........G..T. MG570452.1_Pimephales_promelas_i G...G....G..G.T......C..GT.T..T...G.AC.......C........C.....C..T...........C..T. MG570452.1_Pimephales_promelas_S G...G....G..G.T......C..GT.T..T...G.AC.......C..A.....C.....C..............C..T. AB626850.1_Megalobrama_terminali ACCAACTAATACACCTCGTATGAAAAAACTTCCTCCCCCTAACACTGGCCCTGGTACTATGACACATCGCCCTACCAATC AP010779.1_Mylocheilus_caurinus_ .......T........T.....G........T..T...T....G..A..A..T...T...........T....C.....T AP011215.1_Gila_sp._1460_mitocho ....G..T.....T..G........G..T..T..T..T..G...T.A..G..T...T..........TT....T..T..T AP011263.1_Scardinius_erythropht .T.....T..G.....A...........T.....T...........A.....T..CT...........T....C..T... AP011267.1_Algansea_lacustris_mi .......T.....TT.G..G..G.....T...........G...........C..GT....G..TG.AT....C..G..T AP011268.1_Yuriria_alta_mitochon .......T........A..G...........T..T...........A..T..C...T.......TG.AT.T..C..G..T AP011273.1_Hybognathus_nuchalis_ .T..G..C..G...T.A.................T...T.......A.....C............G..T....T..G... AP011274.1_Couesius_plumbeus_mit .......T..G.....T..G..G........T..T.....C.....A..T..T...T.G.....T..TT....C.....T AP011275.1_Platygobio_gracilis_m .T.....C........T..C...........T..T...........A..A..C...T....G..TG.AT....C..G..T AP011277.1_Erimystax_dissimilis_ .T..G..T..G.....T........G.GT..T..T..AT.G..C..A.....T..TT.G.........T.T..C.....T AP011279.1_Pimephales_promelas_m .......C.....T..A..G.....G..............G.....A.....C..CT.G.....TG.GT....C.....T AP011280.1_Clinostomus_elongatus .T..G.................G........T..T........G..A..A..T...T...........T.T..C.....T AP012079.1_Luxilus_chrysocephalu .......C......T.A..G..G...........T...T....G..A.....C...T.G.....TG.AT....C.....T AP012080.1_Macrhybopsis_gelida_m ....G..T..G..T..T..C..............T..............T..A...T.......TG.AT....T...... AP012083.1_Notropis_atherinoides .......C..G.....A........G.....T..T..TT.G..G..A.....C...T.......TG.GT....C.....T AP012084.1_Notropis_baileyi_mito .......T..G...T.G..C.....G........T...........A.....C...T.......TG.AT....C...... AP012087.1_Cyprinella_galactura_ .......T..G...T.A.....G........T..T..A........A.....T.....G.....TG.AT.T.....T..T AP012088.1_Hybopsis_lineapunctat ....G..C..G...T.A.....G..G........T...........A.....C...T........G.GT....C..T..T AP012090.1_Luxilus_cornutus_mito .......C..G...T.A........G.....T..T...........A.....A...........TG.AT....C.....T AP012091.1_Lythrurus_ardens_mito .T..G..C..G..TT.A..G........T.....T...........A..T..T...T.......TG.TT....C..T..T AP012092.1_Lythrurus_fumeus_mito ....G..C..G..TT.G..G..G.....T.....T.....G.....A..T..T...T.......TG.AT.T..C..C..T AP012093.1_Lythrurus_lirus_mitoc .T.....C..G...T.A.....G..G..T.....T.....G.....A..T..T...T.......TG.TT....C..T..T AP012094.1_Lythrurus_umbratilis_ .T..G..C..G..TT.A..G........T.....T.....G.....A..T..T...T.......TG.TT....C..T..T AP012095.1_Macrhybopsis_meeki_mi ....G..T.....T..T..C..........................A..T..T...T.......TG.GT.T..T.....T AP012097.1_Notropis_bifrenatus_m .......T.....TT.A.....G.....T..T..............A.....T...T.......TG.AT.T..T..T... AP012098.1_Pimephales_sp._MCZunc .......G..G..TT.A........G........T...T.......A.....T...T.G.....TG.GT....C..T..T AP012100.1_Notropis_telescopus_m .......C..G...T.G.....G.....T.....T........G..A.....T........G..TG.AT.T..C..C..T AP012101.1_Pimephales_notatus_mi .......G..G..TT.A........G........T...T....G..A.....T...T.G.....TG.GT....C..T..T AP012102.1_Pimephales_vigilax_mi .......C......T.A.....G...........T...T.......A.....T...........TG.AT.T..C..C..T AP012103.1_Pogonichthys_macrolep .T.....T..G.....T........G.....T..T...T..........A..T...T...........T....C..G..T AP012106.1_Richardsonius_balteat .T.....T........T.....G........T..T........G..A..A..T...T.G..G......T....C.....T AP012108.1_Notropis_chrosomus_mi ....G..C..G...T.A..C.....G........T.................C..GT....G..TG.AT.T..T.....T AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .......C......T.A.....G...........T...T.......A.....T...........TG.AT.T..C..C..T Pimephales_vigilax_R1S3_________ .......C......T.A.....G...........T...T.......A.....T...........TG.AT.T..C..C..T DQ536429.1_Notropis_stramineus_m ....G..T..G...T.G..G.....G........T...........A.....T..GT.......TG.AT....C..C..T JX910141.1_Squaliobarbus_curricu .......C.............................T........A.....A..G.........G.......G..G... KC351187.1_Squaliobarbus_curricu .......C.............................T........A.....A..G.........G.......G..G... KT278765.1_Pimephales_promelas_m .......C.....T..G..G.....G....................A.....C..CT....G..TG.AT....C.....T KT289925.1_Pimephales_promelas_m .......C.....T..A..G.....G..............G..G..A.....C..CT.......TG.AT....C.....T KT424924.1_Rhinichthys_osculus_m ....G..T..G..T..T.....G..G.....T..T..TT.G.....A..T..T..CT.......T...T.T..C..G... KU200257.1_Chanodichthys_ilishae ................T....................AT.....T.....T.A...........T..T.....G...... MF972070.1_Siphateles_bicolor_mo .T.....T..G..T..T........G..T..T..T..T........A.....T..............TT.T..T..T..T MG570407.1_Notropis_chalybaeus_v .T.....T..G...T.A..C..............T.........T.......T...T........G.AT....C...... MG570408.1_Notropis_bifrenatus_v .......T.....TT.A.....G.....T..T..............A.....T...T....G..TG.AT.T..T..T... MG570413.1_Notropis_heterolepis_ ....G..C..G...T.A..............T..T........G..A.....C...T.......TG.AT....C..C..T MG570416.1_Rhinichthys_obtusus_v ....G..T..G.....T.....G..G..T..T..T..TT.......A..T..T..GT...........T....C..G..T MG570417.1_Rhinichthys_obtusus_v ....G..T..G.....T.....G..G..T..T..T..TT.......A..T..T..GT...........T....C..G..T MG570420.1_Pimephales_notatus_vo .......G..G..TT.A........G........T...T.......A.....T...T.G.....TG.GT....C..T..T MG570443.1_Notropis_hudsonius_is ....G..T......T.A........G........T.................C...........TG.GT.T..C..T... MG570444.1_Rhinichthys_atratulus ....G..T..G.....T........G..T..T..T..TT.......A..T..T..GT.G..G......T....C..G..T MG570445.1_Rhinichthys_atratulus ....G..T..G.....T........G..T..T..T..TT.......A..T..T..GT.G..G......T....C..G..T MG570447.1_Luxilus_cornutus_isol .......C..G...T.A........G.....T..T...........A.....A...........TG.AT....C.....T MG570449.1_Luxilus_cornutus_isol .......C..G...T.A........G.....T..T...........A.....A...........TG.AT....C.....T MG570450.1_Pimephales_notatus_is .......G..G..TT.A........G........T...T.......A.....T...T.G.....TG.GT....C..T..T MG570451.1_Notropis_bifrenatus_i .......T.....TT.A.....G.....T..T..............A.....T...T.......TG.AT.T..T..T... MG570453.1_Exoglossum_maxillingu .T..G..T..G.....T........G.GT..T..T..AT.G..C..A.....T..TT.G.........T.T..C.....T MG570454.1_Pimephales_promelas_i .......C.....T..A..G.....G..............G..G..A.....C..CT.......TG.AT....C.....T MG570455.1_Notropis_atherinoides .......C..G.....A..G.....G.....T..T..TT....G..A.....C...T.......TG.GT....C.....T MG570456.1_Notropis_atherinoides .......C..G.....A........G.....T..T..TT....G..A.....C...T.......TG..T....C.....T MG570457.1_Pimephales_notatus_is .......G..G..TT.A........G........T...T.......A.....T...T.G.....TG.GT....C..T..T MG570458.1_Pimephales_notatus_is .......G..G..TT.A........G........T...T.......A.....T...T.G.....TG.GT....C..T..T MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ....G..C..G...T.G..C..............T...........A.....T...T.......TG.AT.T..T.....T MT364325.1_Hybognathus_amarus_mi .T.....C..G...T.A........G........T...T.......A.....C............G..T.T..T..G..T MT501368.1_Gila_cypha_isolate_SN .......T..G..T..A........G..T..T..T..T........A..G..T...T..........TT....T..T... MT501369.1_Notropis_simus_pecose ....G..C..G...T.G..T..G..G........T...T.....T.A..T..T..T........TG.AT.T..C.....T MT501378.1_Hybognathus_amarus_is .T.....T..G...T.A........G........T...T.......A.....C............G..T.T..T..G..T MT501385.1_Notropis_jemezanus_vo ....G..C..G...T.G.....G..G..T..T..T..T........A.....C...T.......TG.AT....C.....T MT501391.1_Rhinichthys_osculus_i ....G..T..G.....T........G.....T..T..TT.G.....A..T..T...T.G.....T..TT.T..C...... MT667239.1_Rhinichthys_osculus_t ....G..T..G.....T........G.....T..T..TT.G.....A..T..T...T.G.....T..TT.T..C...... MT667242.1_Luxilus_cornutus_vouc .......C..G...T.A........G.....T..T...........A.....A...........TG.AT....C.....T MW300340.1_Hybognathus_placitus_ .......C..G...T.G.....G...........T........G..A.....T...T.......TG..T....C.....T MW300341.1_Hybognathus_placitus_ .......C..G...T.G.....G...........T........G..A.....T...T.......TG..T....C.....T NC_013763.1_Mylocheilus_caurinus .......T........T.....G........T..T...T....G..A..A..T...T...........T....C.....T NC_033926.1_Opsopoeodus_emiliae_ .......T.....TT.A..C..........................A.....A...T.......TG.TT.G..T..T..T NC_037008.1_Notropis_chalybaeus_ .T.....T..G...T.A..C..............T.........T.......T...T........G.AT....C...... NC_037009.1_Notropis_heterolepis ....G..C..G...T.A..............T..T........G..A.....C...T.......TG.AT....C..C..T NC_037010.1_Rhinichthys_obtusus_ ....G..T..G.....T.....G..G..T..T..T..TT.......A..T..T..GT...........T....C..G..T NC_037014.1_Notropis_hudsonius_i ....G..T......T.A........G........T.................C...........TG.GT.T..C..T... NC_037015.1_Exoglossum_maxilling .T..G..T..G.....T........G.GT..T..T..AT.G..C..A.....T..TT.G.........T.T..C.....T NC_054086.1_Ptychocheilus_lucius .......T.....T..A........G..T..T..T..T........A..A..T...T..........TT....T..T..T NC_054257.1_Gila_cypha_isolate_S .......T..G..T..A........G..T..T..T..T........A..G..T...T..........TT....T..T... NC_054259.1_Gila_nigrescens_isol .......T..G..T..G........G..T..T..T..T..G...T.A..G..T...T..........TT....T..T..T NC_054260.1_Hybognathus_amarus_i .T.....C..G...T.A........G........T...T.......A.....C............G..T.T..T..G..T NC_054262.1_Notropis_jemezanus_v ....G..C..G...T.G.....G..G..T..T..T..T........A.....C...T.......TG.AT....C.....T Pimephales_notatus_R2S3_________ ....G..C..G..TT.G.................T...........A.....T..TT.G..G..TG.GT....C..T..T Pimephales_tenellus_tenellu_R2S1 .......T..G...T.A.................T.....T...T.A.....T.....G.....TG.AT.A..C..T..T Pimephales_tenellus_parvice_R2S2 .......T..G...T.A.................T.....T...T.A.....T...........TG.AT.A..C..T..T Pimephales_notatus_R1S1_________ ....G..C..G..TT.G.................T...........A.....T..TT.G..G..TG.GT....C..T..T MG570452.1_Pimephales_promelas_i .......C.....T..A..G.....G..............G..G..A.....C..CT.......TG.AT....C.....T MG570452.1_Pimephales_promelas_S .......C.....T..A..G.....G..............G.....A.....C..CT.G.....TG.GT....C.....T AB626850.1_Megalobrama_terminali GCACTAGCGGGCCTTCCCCCACAACTATAATTCAGGAACTGTGCCCGAATGCCTAGGGACCACTTTGATAGAGTGGCCTA AP010779.1_Mylocheilus_caurinus_ .............................GC.T...............G.............................A. AP011215.1_Gila_sp._1460_mitocho ...T....A.....C..A......T.C..GC......................C.......................TA. AP011263.1_Scardinius_erythropht ..G.......................G...C..G...................C.......................TA. AP011267.1_Algansea_lacustris_mi ..T..G.....A.....A........G...C.................GC...C.......................T.. AP011268.1_Yuriria_alta_mitochon .................A........G...C.................G....C.......................T.. AP011273.1_Hybognathus_nuchalis_ .....G........C........GT.G...CC................G.A..........................T.. AP011274.1_Couesius_plumbeus_mit .....T..A...............T.....C.TG...............C...........................TG. AP011275.1_Platygobio_gracilis_m .......................G..G...C.................G....C....G..................T.. AP011277.1_Erimystax_dissimilis_ ...........A...........GT.G...C.T..........................................A.T.. AP011279.1_Pimephales_promelas_m .....G..C........A.....G.....GC.................G....C.......................TA. AP011280.1_Clinostomus_elongatus ..........................T..GC.T...............G.............................A. AP012079.1_Luxilus_chrysocephalu .......................G.....GCC................GC...C.......................T.. AP012080.1_Macrhybopsis_gelida_m ........................T.....C.................G....C.................G.....T.. AP012083.1_Notropis_atherinoides .......................G.....G.C.G..............G....C....G..................T.. AP012084.1_Notropis_baileyi_mito ....................G........G..TT..............G....C.......................T.. AP012087.1_Cyprinella_galactura_ ..G..C..A..G..C..T..G.........CCT.......A.......G....C.......................T.. AP012088.1_Hybopsis_lineapunctat ........................T.G...C.................G....C.......................T.. AP012090.1_Luxilus_cornutus_mito .....G.................G..G.....................G....C.......................T.. AP012091.1_Lythrurus_ardens_mito .......................G.....G..G...............G.A..C.......................T.. AP012092.1_Lythrurus_fumeus_mito .....G.................GT.G......G..............G...........................TT.. AP012093.1_Lythrurus_lirus_mitoc .....G..............T..G.....GC.AG..............G.A..C.......................T.. AP012094.1_Lythrurus_umbratilis_ .......................G.....G..G...............G.A..C.......................T.. AP012095.1_Macrhybopsis_meeki_mi ....................G...T.....CC................G....C.......................T.. AP012097.1_Notropis_bifrenatus_m .................A........G..G..................G....C.......................T.. AP012098.1_Pimephales_sp._MCZunc .....G..................T.G...C.................G....C.......................TA. AP012100.1_Notropis_telescopus_m .....G.....A...........G..G....C................G....C.......................T.. AP012101.1_Pimephales_notatus_mi ........................T.G...CC................G....C.......................TA. AP012102.1_Pimephales_vigilax_mi ...............................CA...............GC...C.....T...............A.T.. AP012103.1_Pogonichthys_macrolep .....G..........................T..........................................A..A. AP012106.1_Richardsonius_balteat ..............................C.T...............G.........G...................A. AP012108.1_Notropis_chrosomus_mi ..........................G...C.................G.A..C.......................T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...............................CA...............GC...C.....T...............A.T.. Pimephales_vigilax_R1S3_________ ...............................CA...............GC...C.....T...............A.T.. DQ536429.1_Notropis_stramineus_m .....G.....T........G..G.....GC.................G....C.......................T.. JX910141.1_Squaliobarbus_curricu ........A....................................................................T.. KC351187.1_Squaliobarbus_curricu ........A....................................................................T.. KT278765.1_Pimephales_promelas_m .....G..C........A...........GC.................G....C.......................TA. KT289925.1_Pimephales_promelas_m .....G..C........G.....G.....GC.................G....C.......................TA. KT424924.1_Rhinichthys_osculus_m .....G..A..............G..G..GC.T.A.............G....C.......................TA. KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo .....G..A........A......T.C..GC.TG...................C.......................TA. MG570407.1_Notropis_chalybaeus_v ....................G..G..G...C.T...............G....C.......................T.. MG570408.1_Notropis_bifrenatus_v .................A........G..G..................G....C.......................T.. MG570413.1_Notropis_heterolepis_ .......................G..G...C.................G....C.......................T.. MG570416.1_Rhinichthys_obtusus_v ..........................G..G..T....................................G........A. MG570417.1_Rhinichthys_obtusus_v ..........................G..G..T....................................G........A. MG570420.1_Pimephales_notatus_vo .....G..................T.G...C.................G....C.......................TA. MG570443.1_Notropis_hudsonius_is ..G..G..........................................G............................T.. MG570444.1_Rhinichthys_atratulus ...T..........C..A.....G.....G..T...............G.............................A. MG570445.1_Rhinichthys_atratulus ...T..........C..A.....G.....G..T...............G.............................A. MG570447.1_Luxilus_cornutus_isol .....G.................G..G.....................G....C.......................T.. MG570449.1_Luxilus_cornutus_isol .....G.................G..G.....................G....C.......................T.. MG570450.1_Pimephales_notatus_is .....G..................T.G...C.................G....C.......................TA. MG570451.1_Notropis_bifrenatus_i .................A........G..G..................G....C.......................T.. MG570453.1_Exoglossum_maxillingu ...........A...........GT.G...C.T..........................................A.T.. MG570454.1_Pimephales_promelas_i .....G..C........G.....G.....GC.................G....C.......................TA. MG570455.1_Notropis_atherinoides ..G..G.................G.....G.C.G..............G....C....G..................T.. MG570456.1_Notropis_atherinoides ..G....................G.....G.C.G..............G....C.......................T.. MG570457.1_Pimephales_notatus_is ........................T.G...C.................G....C.......................TA. MG570458.1_Pimephales_notatus_is .....G..................T.G...C.................G....C.......................TA. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ........A.....C...............CC.................A.........................A.T.. MT364325.1_Hybognathus_amarus_mi ..............C........G..G....C................G......................G.....T.. MT501368.1_Gila_cypha_isolate_SN ..G.....A.....C..A......T.C..GC......................C.......................TA. MT501369.1_Notropis_simus_pecose .............................GC.................G....C....G..................T.. MT501378.1_Hybognathus_amarus_is ..............C...........G....C................G......................G.....T.. MT501385.1_Notropis_jemezanus_vo ..G..G.................G.....GCC.G..............G....C....G..................T.. MT501391.1_Rhinichthys_osculus_i ..G.....A..G........C..G.....GC.T.A.............G....C....G..............C...T.. MT667239.1_Rhinichthys_osculus_t ..G.....A..G........C........GC.T.A.............G....C....G..................T.. MT667242.1_Luxilus_cornutus_vouc .....G.................G..G.....................G....C.......................T.. MW300340.1_Hybognathus_placitus_ ...........T...........G..G....C.G..............G...TC.......................T.. MW300341.1_Hybognathus_placitus_ ...........T...........G..G....C.G..............G...TC.......................T.. NC_013763.1_Mylocheilus_caurinus .............................GC.T...............G.............................A. NC_033926.1_Opsopoeodus_emiliae_ .....G........C........G..G......CA..................C.....................A.TA. NC_037008.1_Notropis_chalybaeus_ ....................G..G..G...C.T...............G....C.......................T.. NC_037009.1_Notropis_heterolepis .......................G..G...C.................G....C.......................T.. NC_037010.1_Rhinichthys_obtusus_ ..........................G..G..T....................................G........A. NC_037014.1_Notropis_hudsonius_i ..G..G..........................................G............................T.. NC_037015.1_Exoglossum_maxilling ...........A...........GT.G...C.T..........................................A.T.. NC_054086.1_Ptychocheilus_lucius ........A.....C..A......T.C..GC..G...................C.......................TA. NC_054257.1_Gila_cypha_isolate_S ..G.....A.....C..A......T.C..GC......................C.......................TA. NC_054259.1_Gila_nigrescens_isol ...T....A.....C..A......T.C..GCC.....................C.......................TA. NC_054260.1_Hybognathus_amarus_i ..............C...........G....C..........A.....G......................G.....T.. NC_054262.1_Notropis_jemezanus_v ..G..G.................G.....GCC.G..............G....C....G..................T.. Pimephales_notatus_R2S3_________ .....G..A.....C..T..G...A.G...C.................G....C.......................TA. Pimephales_tenellus_tenellu_R2S1 ....................G..G..G..GC.................G....C.....................A.TA. Pimephales_tenellus_parvice_R2S2 ....................G..G.....GCC................G....C....G..................TA. Pimephales_notatus_R1S1_________ .....G..A.....C..T..G...A.G...C.................G....C.......................TA. MG570452.1_Pimephales_promelas_i .....G..C........G.....G.....GC.................G....C.......................TA. MG570452.1_Pimephales_promelas_S .....G..C........A.....G.....GC.................G....C.......................TA. AB626850.1_Megalobrama_terminali TAGGGGCTAAAATCCCCTCAGTTCTTAGAAAGAAGGGGATCGAACCCATGCCCAAGAGATCAAAACTCTTAGTGCTTCCT AP010779.1_Mylocheilus_caurinus_ C.....................................G......................................... AP011215.1_Gila_sp._1460_mitocho ...................G.................AG......................................... AP011263.1_Scardinius_erythropht ......T...............................G......................................... AP011267.1_Algansea_lacustris_mi C.....T...............................G......................................... AP011268.1_Yuriria_alta_mitochon C....................................AG..........A.............................. AP011273.1_Hybognathus_nuchalis_ C.....T...............................G......................................... AP011274.1_Couesius_plumbeus_mit ......................................G......................................... AP011275.1_Platygobio_gracilis_m C.....................................G......................................... AP011277.1_Erimystax_dissimilis_ C............................G........G......................................... AP011279.1_Pimephales_promelas_m C...................................................T........................... AP011280.1_Clinostomus_elongatus C.....................................G......................................... AP012079.1_Luxilus_chrysocephalu C.....................................G......................................... AP012080.1_Macrhybopsis_gelida_m C.....................................G.T..........TT...............A........... AP012083.1_Notropis_atherinoides C............................................................................... AP012084.1_Notropis_baileyi_mito C.....T...............................G......................................... AP012087.1_Cyprinella_galactura_ C.................T...................G......................................... AP012088.1_Hybopsis_lineapunctat C.....................................G......................................... AP012090.1_Luxilus_cornutus_mito C.....T...............................G......................................... AP012091.1_Lythrurus_ardens_mito C.....T...............................G......................................... AP012092.1_Lythrurus_fumeus_mito C.....T....G..........................G.T....................................... AP012093.1_Lythrurus_lirus_mitoc C.....T...............................G......................................... AP012094.1_Lythrurus_umbratilis_ C.....T...............................G......................................... AP012095.1_Macrhybopsis_meeki_mi C.....T...............................G.T..........T................A........... AP012097.1_Notropis_bifrenatus_m C.....................................G..........A.............................. AP012098.1_Pimephales_sp._MCZunc C.....T......................................................................... AP012100.1_Notropis_telescopus_m C.....................................G......................................... AP012101.1_Pimephales_notatus_mi C.....T...............................G......................................... AP012102.1_Pimephales_vigilax_mi C.....T...............................G..........A.............................. AP012103.1_Pogonichthys_macrolep CG....................................G......................................... AP012106.1_Richardsonius_balteat C.....................................G......................................... AP012108.1_Notropis_chrosomus_mi C.....T...............................G.T......................................G AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ C.....T...............................G..........A.............................. Pimephales_vigilax_R1S3_________ C.....T...............................G..........A.............................. DQ536429.1_Notropis_stramineus_m C.....................................G......................................... JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m C...................................................T........................... KT289925.1_Pimephales_promelas_m C...................................................T........................... KT424924.1_Rhinichthys_osculus_m C.....T...............................G............T..................G......... KU200257.1_Chanodichthys_ilishae ......................................G......................................... MF972070.1_Siphateles_bicolor_mo .....................................AG......................................... MG570407.1_Notropis_chalybaeus_v C.....T...............................G......................................... MG570408.1_Notropis_bifrenatus_v C.....................................G..........A.............................. MG570413.1_Notropis_heterolepis_ C.....................................G......................................... MG570416.1_Rhinichthys_obtusus_v C.....T......................................................................... MG570417.1_Rhinichthys_obtusus_v C.....T......................................................................... MG570420.1_Pimephales_notatus_vo C.....T......................................................................... MG570443.1_Notropis_hudsonius_is CG.......G............................G......................................... MG570444.1_Rhinichthys_atratulus C.....................................G......................................... MG570445.1_Rhinichthys_atratulus C.....................................G......................................... MG570447.1_Luxilus_cornutus_isol C.....T...............................G......................................... MG570449.1_Luxilus_cornutus_isol C.....T...............................G......................................... MG570450.1_Pimephales_notatus_is C.....T......................................................................... MG570451.1_Notropis_bifrenatus_i C.....................................G..........A.............................. MG570453.1_Exoglossum_maxillingu C............................G........G......................................... MG570454.1_Pimephales_promelas_i C...................................................T........................... MG570455.1_Notropis_atherinoides C............................................................................... MG570456.1_Notropis_atherinoides C............................................................................... MG570457.1_Pimephales_notatus_is C.....T......................................................................... MG570458.1_Pimephales_notatus_is C.....T......................................................................... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v CG....T............G..................G......................................... MT364325.1_Hybognathus_amarus_mi C.....T...............................G......................................... MT501368.1_Gila_cypha_isolate_SN .....................................AG......................................... MT501369.1_Notropis_simus_pecose C....................................AG..........A.............................. MT501378.1_Hybognathus_amarus_is C.....T...............................G......................................... MT501385.1_Notropis_jemezanus_vo C............................................................................... MT501391.1_Rhinichthys_osculus_i C.....................................G............T..................G......... MT667239.1_Rhinichthys_osculus_t C.....................................G............T..................G......... MT667242.1_Luxilus_cornutus_vouc C.....T...............................G......................................... MW300340.1_Hybognathus_placitus_ C.....................................G......................................... MW300341.1_Hybognathus_placitus_ C.....................................G......................................... NC_013763.1_Mylocheilus_caurinus C.....................................G......................................... NC_033926.1_Opsopoeodus_emiliae_ C..........................A.........AG..........A..T........................... NC_037008.1_Notropis_chalybaeus_ C.....T...............................G......................................... NC_037009.1_Notropis_heterolepis C.....................................G......................................... NC_037010.1_Rhinichthys_obtusus_ C.....T......................................................................... NC_037014.1_Notropis_hudsonius_i CG.......G............................G......................................... NC_037015.1_Exoglossum_maxilling C............................G........G......................................... NC_054086.1_Ptychocheilus_lucius .....................................AG......................................... NC_054257.1_Gila_cypha_isolate_S .....................................AG......................................... NC_054259.1_Gila_nigrescens_isol .....................................AG......................................... NC_054260.1_Hybognathus_amarus_i C.....T...............................G......................................... NC_054262.1_Notropis_jemezanus_v C............................................................................... Pimephales_notatus_R2S3_________ C.....T......................................................................... Pimephales_tenellus_tenellu_R2S1 C.....................................G...............................C......... Pimephales_tenellus_parvice_R2S2 C.....................................G...............................C......... Pimephales_notatus_R1S1_________ C.....T......................................................................... MG570452.1_Pimephales_promelas_i C...................................................T........................... MG570452.1_Pimephales_promelas_S C...................................................T........................... AB626850.1_Megalobrama_terminali CTACACCACTTTCTAAGATGGGGTCAGCTAATCAAGCTTTCGGGCCCATACCCCGAACATGACGGTTAAAGTCCCTCCTC AP010779.1_Mylocheilus_caurinus_ ...............................A......................................C......... AP011215.1_Gila_sp._1460_mitocho ...............G...A............T.....................................A......... AP011263.1_Scardinius_erythropht ...............................A.........................A............A......... AP011267.1_Algansea_lacustris_mi ...............T...............AT.....................................C......... AP011268.1_Yuriria_alta_mitochon ...............T...............A......................................A......... AP011273.1_Hybognathus_nuchalis_ ...............T...............A......................................A......... AP011274.1_Couesius_plumbeus_mit ...................A...........AT.....................................C......... AP011275.1_Platygobio_gracilis_m ...............T...............AT...................................G.C......... AP011277.1_Erimystax_dissimilis_ ..........C....................AT.....................................C......... AP011279.1_Pimephales_promelas_m ...............T...............AT.....................................A......... AP011280.1_Clinostomus_elongatus ...............................AT.....................................C......... AP012079.1_Luxilus_chrysocephalu ...............T...............A......................................A......... AP012080.1_Macrhybopsis_gelida_m ...............T...............AT.....................................C......... AP012083.1_Notropis_atherinoides ...............T...............AT.....................................A......... AP012084.1_Notropis_baileyi_mito ...............T...............AT.....................................A......... AP012087.1_Cyprinella_galactura_ ...............T...............AT.....................................A......... AP012088.1_Hybopsis_lineapunctat ...............T...............A......................................A......... AP012090.1_Luxilus_cornutus_mito ...............T...............AT.....................................A......... AP012091.1_Lythrurus_ardens_mito ...............T...............AT.....................................A......... AP012092.1_Lythrurus_fumeus_mito ...............T...............AT...................................G.A......... AP012093.1_Lythrurus_lirus_mitoc ...............T...............AT...................................G.A.......C. AP012094.1_Lythrurus_umbratilis_ ...............T...............AT.....................................A......... AP012095.1_Macrhybopsis_meeki_mi ...............T...............AT.....................................C......... AP012097.1_Notropis_bifrenatus_m ...............T...............A......................................A......... AP012098.1_Pimephales_sp._MCZunc ...............T...............AT.....................................A......... AP012100.1_Notropis_telescopus_m ...............T...............AT.....................................A......... AP012101.1_Pimephales_notatus_mi ...............T...............AT.....................................A......... AP012102.1_Pimephales_vigilax_mi ...............T....AA.........AT.....................................A......... AP012103.1_Pogonichthys_macrolep ....................AA.........AT.....................................C......... AP012106.1_Richardsonius_balteat ...............................AT.....................................C......... AP012108.1_Notropis_chrosomus_mi ...............................AT...................................G.A......... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...............T....AA.........AT.....................................A......... Pimephales_vigilax_R1S3_________ ...............T....AA.........AT.....................................A......... DQ536429.1_Notropis_stramineus_m ...............T...............A......................................A......... JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m ...............T...............A......................................A......... KT289925.1_Pimephales_promelas_m ...............T...............AT.....................................A......... KT424924.1_Rhinichthys_osculus_m ...............................AT......................G..............C......... KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo ................................T.....................................A......... MG570407.1_Notropis_chalybaeus_v ...............T...............AT.....................................A......... MG570408.1_Notropis_bifrenatus_v ...............T...............A......................................A......... MG570413.1_Notropis_heterolepis_ ...............T...............A......................................A......... MG570416.1_Rhinichthys_obtusus_v ...............-...............AT......................G..............C......... MG570417.1_Rhinichthys_obtusus_v ...............-...............AT......................G..............C......... MG570420.1_Pimephales_notatus_vo ...............T...............AT.....................................A......... MG570443.1_Notropis_hudsonius_is ...............T...............AT...................................G.C......... MG570444.1_Rhinichthys_atratulus ...............................AT......................G..............C......... MG570445.1_Rhinichthys_atratulus ...............................AT......................G..............C......... MG570447.1_Luxilus_cornutus_isol ...............T...............AT.....................................A......... MG570449.1_Luxilus_cornutus_isol ...............T...............AT.....................................A......... MG570450.1_Pimephales_notatus_is ...............T...............AT.....................................A......... MG570451.1_Notropis_bifrenatus_i ...............T...............A......................................A......... MG570453.1_Exoglossum_maxillingu ..........C....................AT.....................................C......... MG570454.1_Pimephales_promelas_i ...............T...............AT.....................................A......... MG570455.1_Notropis_atherinoides ...............T...............AT.....................................A......... MG570456.1_Notropis_atherinoides ...............T...............AT.....................................A......... MG570457.1_Pimephales_notatus_is ...............T...............AT.....................................A......... MG570458.1_Pimephales_notatus_is ...............T...............AT.....................................A......... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...............C...............AT.....................................A......... MT364325.1_Hybognathus_amarus_mi ...............T...............A......................................A......... MT501368.1_Gila_cypha_isolate_SN ...............G................T.....................................A......... MT501369.1_Notropis_simus_pecose T..............T...............AT.....................................A......... MT501378.1_Hybognathus_amarus_is ...............T...............A......................................A......... MT501385.1_Notropis_jemezanus_vo ...............T...............AT.....................................A......... MT501391.1_Rhinichthys_osculus_i ...............................AT.....................................C......... MT667239.1_Rhinichthys_osculus_t ...............................AT.....................................C......... MT667242.1_Luxilus_cornutus_vouc ...............T...............AT.....................................A......... MW300340.1_Hybognathus_placitus_ ...............T...............AT.....................................A......... MW300341.1_Hybognathus_placitus_ ...............T...............AT.....................................A......... NC_013763.1_Mylocheilus_caurinus ...............................A......................................C......... NC_033926.1_Opsopoeodus_emiliae_ ...............C.....A.........A......................................A.......C. NC_037008.1_Notropis_chalybaeus_ ...............T...............AT.....................................A......... NC_037009.1_Notropis_heterolepis ...............T...............A......................................A......... NC_037010.1_Rhinichthys_obtusus_ ...............-...............AT......................G..............C......... NC_037014.1_Notropis_hudsonius_i ...............T...............AT...................................G.C......... NC_037015.1_Exoglossum_maxilling ..........C....................AT.....................................C......... NC_054086.1_Ptychocheilus_lucius ...............G................T.....................................A......... NC_054257.1_Gila_cypha_isolate_S ...............G................T.....................................A......... NC_054259.1_Gila_nigrescens_isol ...............G................T.....................................A......... NC_054260.1_Hybognathus_amarus_i ...............T...............A......................................A......... NC_054262.1_Notropis_jemezanus_v ...............T...............AT.....................................A......... Pimephales_notatus_R2S3_________ ...........C...T...............A......................................A......... Pimephales_tenellus_tenellu_R2S1 ...............T...............A......................................A......... Pimephales_tenellus_parvice_R2S2 ...............T...............A......................................A......... Pimephales_notatus_R1S1_________ ...........C...T...............A......................................A......... MG570452.1_Pimephales_promelas_i ...............T...............AT.....................................A......... MG570452.1_Pimephales_promelas_S ...............T...............AT.....................................A......... AB626850.1_Megalobrama_terminali CATCAATGAACCCCTACGTACTCGCAATCCTACTATCCAGCCTAGGATTAGGAACCACCCTAACCTTTGCTAGCTCCCAC AP010779.1_Mylocheilus_caurinus_ .............T........A..C.CG...T.............C..............G........C......... AP011215.1_Gila_sp._1460_mitocho .............T..T.....T.T..C....T.G.............................A........T...... AP011263.1_Scardinius_erythropht ......................AA........T.G.....T..G...C.G.....T.....T..T...........T... AP011267.1_Algansea_lacustris_mi .............T......T.A.TC.C...CT..........T..CC....G........C........C......... AP011268.1_Yuriria_alta_mitochon .............T......T.A..T.CG..TT....T.....T..CC.......T.....C........C..T...... AP011273.1_Hybognathus_nuchalis_ .............T......T.A..C.CG..TT..........T..CC.......TG....C........C......... AP011274.1_Couesius_plumbeus_mit .............T........AAT...TT..T.............T.....G..T.....G.....C..C.....T... AP011275.1_Platygobio_gracilis_m .............T........A..G.CG.....G........T..C..............G.................. AP011277.1_Erimystax_dissimilis_ .............T......T.AA...CAT..T.G........T..C.......................C......... AP011279.1_Pimephales_promelas_m .............T..T...T.GA.C.CA..TT.G..T..T..T..TC....G..T.....T........C......... AP011280.1_Clinostomus_elongatus .............T..T..........CA...T.G.....T.....CC.G.............................T AP012079.1_Luxilus_chrysocephalu .............T......T.G..C.CA..CT..........T..CC....G..T.....C........C......... AP012080.1_Macrhybopsis_gelida_m .............T......T.A....C.T..T....A..T..T..C............T.G.....C..C.....G..T AP012083.1_Notropis_atherinoides .............T......T.A..C.CA..TT.G........T..CC.......T.....C........C.....T... AP012084.1_Notropis_baileyi_mito .............T.....TT.A..C.CA..TT..........C..CC.......T.....C........C..T...... AP012087.1_Cyprinella_galactura_ .............T......T.A..T.CG..T..T........T..CC...........T..G.............A..T AP012088.1_Hybopsis_lineapunctat .............T......T.A..C.CA..T..G........T..TC.......A.....C........C......... AP012090.1_Luxilus_cornutus_mito .............T......T.G..C.CA..CT....T.....T..CC....G..T.....C........C......... AP012091.1_Lythrurus_ardens_mito .............T......T.A..T.CAT..T..........T..CC....G..T..T..C........C........T AP012092.1_Lythrurus_fumeus_mito ..........T..T......T.A..T.CG..GT.G.....T..T..CC....G..T.....T.....C..C......... AP012093.1_Lythrurus_lirus_mitoc .............T......T.A..T.CAT.GT..........T..CC....G..T..T..C........C........T AP012094.1_Lythrurus_umbratilis_ .............T......T.A..T.CAT.GT..........T..CC....G..T..T..C........C........T AP012095.1_Macrhybopsis_meeki_mi .............T..T...T.A....C.T..T..........T..C............T.......C..C.....G..T AP012097.1_Notropis_bifrenatus_m .............T......T.AA.C.C...TT....T.....T..CC.......T.....C........C......... AP012098.1_Pimephales_sp._MCZunc ....................T.AA.C.CA..TT....T.....C..TC.......T.....G........C.....T... AP012100.1_Notropis_telescopus_m .............T......T.A..T.CA..TT....A..T.....CC....G..T.....C........C......... AP012101.1_Pimephales_notatus_mi ....................T.AA.C.CA..TT....T.....C..TC.......T..............C.....T... AP012102.1_Pimephales_vigilax_mi ..........T..T......T.AA.T.CA..TT....T.....T..CC.............T........C......... AP012103.1_Pogonichthys_macrolep ......................A..C.CG..G..G........G..C.....G.................C.....T... AP012106.1_Richardsonius_balteat .............T............GCA...T.G........G..TC.G..G.......................T... AP012108.1_Notropis_chrosomus_mi ..........T..T.....TT.A..C.CA..TT..........C..CC....G..T.....T........C......... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..........T..T......T.AA.T.CA..TT....T.....T..CC.............T........C......... Pimephales_vigilax_R1S3_________ ..........T..T......T.AA.T.CA..TT....T.....T..CC.............T........C......... DQ536429.1_Notropis_stramineus_m .............T......T.A..C.CG..T..G........C..CC.......T.....C........C......... JX910141.1_Squaliobarbus_curricu .............T........A............................................C..C.....T... KC351187.1_Squaliobarbus_curricu .............T........A............................................C..C.....T... KT278765.1_Pimephales_promelas_m .............G..T...T.AA.C.CA..TT.G..T..T..T..TC.......T.....T........C......... KT289925.1_Pimephales_promelas_m .............T..T...T.AA.C.CA..TT.G..T..T..T..TC....G..T.....T........C......... KT424924.1_Rhinichthys_osculus_m .............T..T.....A....CA...T..........T..C.......................C......... KU200257.1_Chanodichthys_ilishae ................T.............................T............T..........C......... MF972070.1_Siphateles_bicolor_mo ......................TAT..C....T.G...........G........T.....G.................. MG570407.1_Notropis_chalybaeus_v .............T.....TT.A..C.CA..TT.G.....T..C..CC....G..T.....C........C..T...... MG570408.1_Notropis_bifrenatus_v .............T......T.AA.C.C...TT....T.....T..CC.......T.....C........C......... MG570413.1_Notropis_heterolepis_ .............T..T...T.A..C.CA..TT.......T..C..CC.......T.....C........C......... MG570416.1_Rhinichthys_obtusus_v .............T......T.AA...CG...T.G..A.....T..C.....G........C........C......... MG570417.1_Rhinichthys_obtusus_v .............T......T.AA...CG...T.G..A.....T..C.....G........C........C......... MG570420.1_Pimephales_notatus_vo ....................T.AA.C.CA..TT....T.....C..TC.......T.....G........C.....T... MG570443.1_Notropis_hudsonius_is ..........T..T..T...T.A..C.CA..TT..........T..CC..........T..C........C..T...... MG570444.1_Rhinichthys_atratulus .............T......T.AA..GCA...T..........T..C..............C........C......... MG570445.1_Rhinichthys_atratulus .............T......T.AA..GCA...T..........T..C..............C........C......... MG570447.1_Luxilus_cornutus_isol .............T......T.G..C.CA..CT....T.....T..CC....G..T.....C........C......... MG570449.1_Luxilus_cornutus_isol .............T......T.G..C.CA..CT....T.....T..CC....G..T.....C........C......... MG570450.1_Pimephales_notatus_is ....................T.AA.C.CA..TT....T.....C..TC.......T.....G........C.....T... MG570451.1_Notropis_bifrenatus_i .............T......T.AA.C.C...TT....T.....T..CC.......T.....C........C......... MG570453.1_Exoglossum_maxillingu .............T......T.AA...CAT..T.G........T..C.......................C......... MG570454.1_Pimephales_promelas_i .............T..T...T.AA.C.CA..TT.G..T..T..T..TC....G..T.....T........C......... MG570455.1_Notropis_atherinoides .............T......T.A..C.CA..TT.G........T..CC.......T.....C........C.....T... MG570456.1_Notropis_atherinoides .............T......T.A..C.CA..TT.G........T..CC.......T.....C........C.....T... MG570457.1_Pimephales_notatus_is ....................T.AA.C.CA..TT....T.....C..TC.......T.....G........C.....T... MG570458.1_Pimephales_notatus_is ....................T.AA.C.CA..TT....T.....C..TC.......T.....G........C.....T... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .............T...A.TT.A..C.CA..TT....T.....C..CC.G..G........C.....C..C......... MT364325.1_Hybognathus_amarus_mi .............T......T.A..C.CG..TT..........T..CC.G.....TG....C........C......... MT501368.1_Gila_cypha_isolate_SN ......................TA...C....................................A........T...... MT501369.1_Notropis_simus_pecose ...................CT.A..C.CA..CT..........C..CC.......T.....T........C......... MT501378.1_Hybognathus_amarus_is .............T......T.A..C.CG..TT..........T..CC.G.....TG....C........C......... MT501385.1_Notropis_jemezanus_vo .............T......T.A..C.CA..CT..........T..CC.G.....T.....C........C......... MT501391.1_Rhinichthys_osculus_i ................T.....A....C....T..........T..C.......................C......... MT667239.1_Rhinichthys_osculus_t ................T.....A....C....T..........T..C.......................C......... MT667242.1_Luxilus_cornutus_vouc .............T......T.G..C.CA..CT....T.....T..CC....G..T.....C........C......... MW300340.1_Hybognathus_placitus_ .............T......T.A..C.CA...T..........T..CC.............C........C......... MW300341.1_Hybognathus_placitus_ .............T......T.A..C.CA...T..........T..CC.......T.....C........C......... NC_013763.1_Mylocheilus_caurinus .............T........A..C.CG...T.............C..............G........C......... NC_033926.1_Opsopoeodus_emiliae_ ..........T.....T...T.AA.CGCA..TA....T...T....CC.......T.....T........C.....T... NC_037008.1_Notropis_chalybaeus_ .............T.....TT.A..C.CA..TT.G.....T..C..CC....G..T.....C........C..T...... NC_037009.1_Notropis_heterolepis .............T..T...T.A..C.CA..TT.......T..C..CC.......T.....C........C......... NC_037010.1_Rhinichthys_obtusus_ .............T......T.AA...CG...T.G..A.....T..C.....G........C........C......... NC_037014.1_Notropis_hudsonius_i ..........T..T..T...T.A..C.CA..TT..........T..CC..........T..C........C..T...... NC_037015.1_Exoglossum_maxilling .............T......T.AA...CAT..T.G........T..C.......................C......... NC_054086.1_Ptychocheilus_lucius .............T........TAT.......T.G.............................A............... NC_054257.1_Gila_cypha_isolate_S ......................TA...C....................................A........T...... NC_054259.1_Gila_nigrescens_isol .............T........TAT..C....T.G.............................A........T...... NC_054260.1_Hybognathus_amarus_i .............T......T.A..C.CG..TT..........T..CC.G.....TG....C........C......... NC_054262.1_Notropis_jemezanus_v .............T......T.A..C.CA..CT..........T..CC.G..G..T.....C........C......... Pimephales_notatus_R2S3_________ .............T......T.A..C.CA..TT....T.....C..CC....G..T.....T........C......... Pimephales_tenellus_tenellu_R2S1 .............T......T.AA.T.CA..TT.G..T.....T..TC.......T.....C........C......... Pimephales_tenellus_parvice_R2S2 .............T......T.AA.T.CA..TT.G..T.....T..TC.......T..T..C........C......... Pimephales_notatus_R1S1_________ .............T......T.A..C.CA..TT....T.....C..CC....G..T.....T........C......... MG570452.1_Pimephales_promelas_i .............T..T...T.AA.C.CA..TT.G..T..T..T..TC....G..T.....T........C......... MG570452.1_Pimephales_promelas_S .............T..T...T.GA.C.CA..TT.G..T..T..T..TC....G..T.....T........C......... AB626850.1_Megalobrama_terminali TGATTACTAGCCTGAATAGGACTGGAAATTAACACCCTGGCAATCATTCCTCTAATAGCACAACACCACCACCCCCGCGC AP010779.1_Mylocheilus_caurinus_ ..GC..T..........G..GT.A........T.....A.....T..C...T.G.......................... AP011215.1_Gila_sp._1460_mitocho ..GC.G..G..T...........A........T..TT.......T.....C.....G....................... AP011263.1_Scardinius_erythropht ...........T.....G..CT.A..G..C..T.....A..G..TG....C..G.....G.....T.....T.....T.. AP011267.1_Algansea_lacustris_mi ......T.G..............A..G.....T..T..A......G.C...T....G.................T..... AP011268.1_Yuriria_alta_mitochon ...C..T................A...........T..A..C..TG.....T...................T........ AP011273.1_Hybognathus_nuchalis_ ......T.G..............A........T..T........TG.C...T...................T..T..A.. AP011274.1_Couesius_plumbeus_mit ..G..G..C..T.....G..GT.A..G...........A..G..T..G..CT..........G..T.....T..T..T.. AP011275.1_Platygobio_gracilis_m .....GT..........G..C..A........T.....A..G..TG.C..CT............................ AP011277.1_Erimystax_dissimilis_ ...C..T.......G......T.A.....C........A........C...T.......G..G................. AP011279.1_Pimephales_promelas_m ......T.G..............A..G.....T..T..A.....T..C..G.....G...........T........G.. AP011280.1_Clinostomus_elongatus ...C.GT..............T.A..G.........T.A.....T..C..CT..........G................. AP012079.1_Luxilus_chrysocephalu .....G..G.....G........A..G........T........TG.....T.G..G.....G................. AP012080.1_Macrhybopsis_gelida_m ......T................A........T..T..A......G.....T.............T.............. AP012083.1_Notropis_atherinoides ........G........G..GT....G.....T..T........TG.....T..........G.....T........... AP012084.1_Notropis_baileyi_mito ......T.............G..A..G........T..A......G.....T.........................T.. AP012087.1_Cyprinella_galactura_ .....GT.G..............A........T..TT.A.....TG.....T....G.....G........T........ AP012088.1_Hybopsis_lineapunctat ......T.G...........G..A........T..T...........C..CT.G..G.....G..T.....T..A..A.. AP012090.1_Luxilus_cornutus_mito ...C.GT.G.....G..G.....A..G...........A.....TG.....T.G........G................. AP012091.1_Lythrurus_ardens_mito ........G..............A........T..TT.......TG.....T.G...........T.............. AP012092.1_Lythrurus_fumeus_mito .....G..............G..A..G..C..T..T..A.....T......T....G..G..G..T.............. AP012093.1_Lythrurus_lirus_mitoc .....G..............G..A........T..TT.......TG.....T.G........G..T.............. AP012094.1_Lythrurus_umbratilis_ ........G..............A........T..TT.......TG.....T.G...........T.............. AP012095.1_Macrhybopsis_meeki_mi ......T................A........T.....A.....TG....AT.............T.............. AP012097.1_Notropis_bifrenatus_m ......T.G........G.....A........T..T..A..C..T......T......................T..T.. AP012098.1_Pimephales_sp._MCZunc ......T.............G..A..G.....T..T..A.....T.....A........C........T........A.. AP012100.1_Notropis_telescopus_m ..G...T.............G..A..G...........A......G.C...T.G........G..T..T........G.. AP012101.1_Pimephales_notatus_mi ......T.G...........G..A..G.....T..T..A.....T.....A........C........T..T.....A.. AP012102.1_Pimephales_vigilax_mi ..G...T..............T.A........T..T..A.....T.....A........C.................G.. AP012103.1_Pogonichthys_macrolep ...C.G..G........G..............T.....A.....T................................... AP012106.1_Richardsonius_balteat ...C..T.G..............A........T.....A.....TG.C...T..........G................. AP012108.1_Notropis_chrosomus_mi .....G.................A..G.....T..T........T.....CT...................T..T..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..G...T..............T.A........T..T..A.....T.....A........C.................G.. Pimephales_vigilax_R1S3_________ ..G...T..............T.A........T..T..A.....T.....A........C.................G.. DQ536429.1_Notropis_stramineus_m ...C..T................A..G.....T............G.....T.......T.....T..T..T.....T.. JX910141.1_Squaliobarbus_curricu ...C.......T........C...............T.A.....T........C.......................... KC351187.1_Squaliobarbus_curricu ...C.......T........C...............T.......T........C.......................... KT278765.1_Pimephales_promelas_m ......T.G..............A..G.....T..T..A.....TG.C..G..G..G........T..T........A.. KT289925.1_Pimephales_promelas_m ......T.G.................G.....T..T..A.....T..C..C.....G...........T........G.. KT424924.1_Rhinichthys_osculus_m ...C..T.G...........G..A..G....................C...T.............T..T..T..G..... KU200257.1_Chanodichthys_ilishae ...C....G..............A....................T..C..C.......................T..T.. MF972070.1_Siphateles_bicolor_mo ...C....G..T...........A..G.....T..TT.A.....T.....C..G..G.....G..............G.. MG570407.1_Notropis_chalybaeus_v ......T..........G.....A........T.....A......G.....T.........................T.. MG570408.1_Notropis_bifrenatus_v ......T.G........G.....A........T..T..A..C..T......T......................T..T.. MG570413.1_Notropis_heterolepis_ ......T.G..............A...........T..A.....TG....CT................T........T.. MG570416.1_Rhinichthys_obtusus_v ..GC..T.......G........A..G.....T.....A.....T..C...T.......G..G................. MG570417.1_Rhinichthys_obtusus_v ..GC..T.......G........A..G.....T.....A.....T..C...T.......G..G................. MG570420.1_Pimephales_notatus_vo ......T.............G..A..G.....T..T..A.....T.....A........C........T........A.. MG570443.1_Notropis_hudsonius_is .....GT.G........G..C..A...........A........TG.C...T.G..............T........... MG570444.1_Rhinichthys_atratulus ..GC..T................A..G.....T.....A.....T......T.......G........T........... MG570445.1_Rhinichthys_atratulus ..GC..T................A..G.....T.....A.....T......T.......G........T........... MG570447.1_Luxilus_cornutus_isol .....GT.G.....G..G.....A..G...........A.....TG.....T.G........G................. MG570449.1_Luxilus_cornutus_isol .....GT.G.....G..G.....A..G...........A.....TG.....T.G........G................. MG570450.1_Pimephales_notatus_is ......T.............G..A..G.....T..T..A.....T.....A........C........T........A.. MG570451.1_Notropis_bifrenatus_i ......T.G........G.....A........T..T..A..C..T......T......................T..T.. MG570453.1_Exoglossum_maxillingu ...C..T.......G......T.A.....C........A........C...T.......G..G................. MG570454.1_Pimephales_promelas_i ......T.G.................G.....T..T..A.....T..C..C.....G...........T........G.. MG570455.1_Notropis_atherinoides ........G........G..GT....G.....T..T........TG.....T................T........... MG570456.1_Notropis_atherinoides ........G........G..GT....G.....T..T........TG.....T..........G.....T........... MG570457.1_Pimephales_notatus_is ......T.............G..A..G.....T..T..A.....T.....A........C........T........A.. MG570458.1_Pimephales_notatus_is ......T.............G..A..G.....T..T..A.....T.....A........C........T........A.. MK421554.1_Parabramis_pekinensis ...............................................................................T MT333789.1_Notropis_lutipinnis_v ...C..T................A........T..T........TG....CT......................T..... MT364325.1_Hybognathus_amarus_mi ......T.G........G.....A........T..T........TG.....T................T..T..T..A.. MT501368.1_Gila_cypha_isolate_SN ...C....G..T.....G..G..A........T..TT.......T..C..C.....G.....G................. MT501369.1_Notropis_simus_pecose ...C..T..........G..GT.A..G.....T..T........TG.......G.......................... MT501378.1_Hybognathus_amarus_is ......T.G........G.....A........T..T........TG.....T................T..T..T..A.. MT501385.1_Notropis_jemezanus_vo ..G.....G........G...T.A........T..T........TG.....T................T.....A..... MT501391.1_Rhinichthys_osculus_i ...C.GT.G........G...T.A....................T..C...T....G...........T..T..A..... MT667239.1_Rhinichthys_osculus_t ...C.GT.G............T.A....................T..C...T....G...........T..T..A..... MT667242.1_Luxilus_cornutus_vouc .....GT.G.....G..G.....A..G...........A.....TG.....T.G.......................... MW300340.1_Hybognathus_placitus_ ..G...T.G..............A...........T........TG.....T.G........G..T..T..T..T..G.. MW300341.1_Hybognathus_placitus_ ......T.G..............A...........T........TG.....T.......G..G..T..T..T..T..G.. NC_013763.1_Mylocheilus_caurinus ..GC..T..........G..GT.A........T.....A.....T..C...T.G.......................... NC_033926.1_Opsopoeodus_emiliae_ ......T................A........T..T..A.....TC.C..CT............TT..T..T.....G.. NC_037008.1_Notropis_chalybaeus_ ......T..........G.....A........T.....A......G.....T.........................T.. NC_037009.1_Notropis_heterolepis ......T.G..............A...........T..A.....TG....CT................T........T.. NC_037010.1_Rhinichthys_obtusus_ ..GC..T.......G........A..G.....T.....A.....T..C...T.......G..G................. NC_037014.1_Notropis_hudsonius_i .....GT.G........G..C..A...........A........TG.C...T.G..............T........... NC_037015.1_Exoglossum_maxilling ...C..T.......G......T.A.....C........A........C...T.......G..G................. NC_054086.1_Ptychocheilus_lucius ...C.......T........GT..........T..TT.......T...........G........T........T..... NC_054257.1_Gila_cypha_isolate_S ...C....G..T.....G..G..A........T..TT.......T..C..C.....G.....G................. NC_054259.1_Gila_nigrescens_isol ..GC.......T...........A..G..C..T..TT.......T.....C.....G....................... NC_054260.1_Hybognathus_amarus_i ......T.G........G.....A........T..T........TG.....T................T..T..T..A.. NC_054262.1_Notropis_jemezanus_v .....G..G........G...T.A..G.....T..T........TG.....T................T.....A..... Pimephales_notatus_R2S3_________ .......................A........T..T..A.....T.....G........C........T..T.....A.. Pimephales_tenellus_tenellu_R2S1 .....GT.G..............A........T..T........TG.C..A...........G.....T........A.. Pimephales_tenellus_parvice_R2S2 .....GT.G..............A..G.....T..T........TG.C..A...........G.....T........A.. Pimephales_notatus_R1S1_________ .......................A........T..T..A.....T.....G........C........T..T.....A.. MG570452.1_Pimephales_promelas_i ......T.G.................G.....T..T..A.....T..C..C.....G...........T........G.. MG570452.1_Pimephales_promelas_S ......T.G..............A..G.....T..T..A.....T..C..G.....G...........T........G.. AB626850.1_Megalobrama_terminali AGTAGAAGCCACCACAAAATATTTCCTAACCCAAGCCACCGCAGCCGCAATAATTATATTTGCAAGCACAACAAATGCCT AP010779.1_Mylocheilus_caurinus_ ...G.................C..TT....T.....T........G..C.....CC.C.....G................ AP011215.1_Gila_sp._1460_mitocho ...G.....GG..........C..T....................A..T......C.G.....G....T........... AP011263.1_Scardinius_erythropht .........A..T.....G..C..T..T.....G........G..G..C......T.G..C..G................ AP011267.1_Algansea_lacustris_mi ......G.....T........C..T..T.....G.....T........CG.C..CC.C..............T..C.... AP011268.1_Yuriria_alta_mitochon ...G.....T...........C..T..T.....G.....T........CG.G..CC.C..C...........C.....A. AP011273.1_Hybognathus_nuchalis_ ......G..T..T.....G..C..T..C..T........T.....T..CG....CC.T........T.....T..C..A. AP011274.1_Couesius_plumbeus_mit ...G.....AG.T..C..G..C..T..T.TT..G.....T..G..A..C......C.C.....G.....G..C..C.... AP011275.1_Platygobio_gracilis_m ......G..T........G..C..T..T.....G.....T........CG....CT.G..C..G..T...........A. AP011277.1_Erimystax_dissimilis_ G........A........G.....T..T..T..G.....T.....A..C.....CC.G..C................... AP011279.1_Pimephales_promelas_m .........T..T.....G..C..T..T...........T.....T..CG.....C................T.....G. AP011280.1_Clinostomus_elongatus ......G..G..............TT....T..............A..C.....CC......................T. AP012079.1_Luxilus_chrysocephalu .........T........G.....T..T...........T........CG.G..CC.C..............T.....A. AP012080.1_Macrhybopsis_gelida_m .........T..T...........T..T........T..A........TG....CC....C.................A. AP012083.1_Notropis_atherinoides .........T..............T..C..G.................CG.C..CC.............G..T.....A. AP012084.1_Notropis_baileyi_mito .........T.....G.....C..T..C...........T........TG.....C.C..............T.....A. AP012087.1_Cyprinella_galactura_ ...T.....T..T..T........T..T.T.........A..G.....TG.C..CC.C..............C.....G. AP012088.1_Hybopsis_lineapunctat C........T..T.....G.....T..T...........T........CG....CC.C..............T.....A. AP012090.1_Luxilus_cornutus_mito G........T........G.....T..T..T..G.....T........CG.G..CC.C........T.T...T.....A. AP012091.1_Lythrurus_ardens_mito ...............T..G.....T..T.....G.....T........CG.G..CC.C..............T.....A. AP012092.1_Lythrurus_fumeus_mito G..G...........C........T..T...........T........CG.G..CC.C........T.....T..C..T. AP012093.1_Lythrurus_lirus_mitoc ...............T..G.....T..T.....G.....T........CG....CC.T..............T.....A. AP012094.1_Lythrurus_umbratilis_ ...............T..G.....T..T.....G.....T........CG.G..CC.C..............T.....A. AP012095.1_Macrhybopsis_meeki_mi ......G..T..T...........T..C...........T........TG....CC....C.................A. AP012097.1_Notropis_bifrenatus_m .........T........G..C.....C..T.................CG....CC.C..............T.....A. AP012098.1_Pimephales_sp._MCZunc ............T..............T...........T........TG....CC................T.....A. AP012100.1_Notropis_telescopus_m .........T...........C..T..T...........T..G.....TG.T..CC.C.....C........T..C..A. AP012101.1_Pimephales_notatus_mi ............T..............T...........T........TG....CC................T.....G. AP012102.1_Pimephales_vigilax_mi .........T..T...........T..T..T..G.....T........CG....CC.G..............T.....A. AP012103.1_Pogonichthys_macrolep ...G....................TT....T.....T........G..C.....CC.C...................... AP012106.1_Richardsonius_balteat C........G..............TT.G.....G.....T.....A..C..G..CC.G...........T........T. AP012108.1_Notropis_chrosomus_mi GA.C.....T..T.....G.....T..C..T........T..G.....CG....CC.C..............T..C..A. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .........T..T...........T..T..T..G.....T........CG....CC.G..............T.....A. Pimephales_vigilax_R1S3_________ .........T..T...........T..T..T..G.....T........CG....CC.G..............T.....A. DQ536429.1_Notropis_stramineus_m G........TG....C..G..C..T..T.....G..T..T........CG.G..CC................T..C.... JX910141.1_Squaliobarbus_curricu ............A............T.............T.....A..............C................... KC351187.1_Squaliobarbus_curricu .A..........A............T............TT.....A..............C................... KT278765.1_Pimephales_promelas_m .........T........G..C..T..T...........T.....T..CG.....C................T.....A. KT289925.1_Pimephales_promelas_m .........T..T.....G..C..T..T...........T.....T..CG.....C................T.....A. KT424924.1_Rhinichthys_osculus_m G..G..G..G........G.....T..T..T.....T..T..C..A..C..G..CC.......G................ KU200257.1_Chanodichthys_ilishae .....................C...........G.............................G...........C.... MF972070.1_Siphateles_bicolor_mo ...G.....AG.......G..C..T...........G........A..T......C.G.....G....T.........A. MG570407.1_Notropis_chalybaeus_v ......G..T..T..G..G.....T..T...........T........TG.....C.C..............T.....A. MG570408.1_Notropis_bifrenatus_v .........T........G..C.....C..T.................CG....CC.C..............T.....A. MG570413.1_Notropis_heterolepis_ T..G.....T..............T..T...........T..G..T..TG....CC.C..............T.....A. MG570416.1_Rhinichthys_obtusus_v G..G..G...........G.....T..T.....G.....T..C..A..C.....CC.T.....G........C....... MG570417.1_Rhinichthys_obtusus_v G..G..G...........G.....T..T.....G.....T..C..A..C.....CC.T.....G........C....... MG570420.1_Pimephales_notatus_vo ............T..............T...........T........TG....CC................T.....A. MG570443.1_Notropis_hudsonius_is .........T..T..C..G..C..T..T.....G..............CG.G..CC.C.....G........C.....A. MG570444.1_Rhinichthys_atratulus G..G..G...........G.....T..T.....G...G.A..C..G..C.....CC.C.....G................ MG570445.1_Rhinichthys_atratulus G..G..G...........G.....T..T.....G...G.A..C..G..C..G..CC.C.....G................ MG570447.1_Luxilus_cornutus_isol G........T........G.....T..T..T........T........CG.G..CC.C..........T...T.....A. MG570449.1_Luxilus_cornutus_isol G........T........G.....T..T..T........T........CG.G..CC.C..........T...T.....A. MG570450.1_Pimephales_notatus_is ............T..............T...........T........TG....CC................T.....A. MG570451.1_Notropis_bifrenatus_i .........T........G..C.....C..T.................CG....CC.C..............T.....A. MG570453.1_Exoglossum_maxillingu G........A........G.....T..T..T..G.....T.....A..C.....CC.G..C................... MG570454.1_Pimephales_promelas_i .........T..T.....G..C..T..T...........T.....T..CG.....C................T..C..A. MG570455.1_Notropis_atherinoides ......G..T..............T..C..G...........G.....CG.C..CC.............G..T.....A. MG570456.1_Notropis_atherinoides .........T..............T..C..G.................CG.C..CC.............G..T.....A. MG570457.1_Pimephales_notatus_is ............T..............T...........T........TG....CC................T.....A. MG570458.1_Pimephales_notatus_is ............T..............T...........T........TG....CC................T.....A. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v G..C.....T..T...........T..C..T........T........CG....CC.C........T.....T..C..A. MT364325.1_Hybognathus_amarus_mi ......G..T..T.....G..C..T..T..T........T.....T..CG....CC.T........T.....T..C..A. MT501368.1_Gila_cypha_isolate_SN ...G.....GG..........C.......................A..T......C.G..........T........... MT501369.1_Notropis_simus_pecose ...G..G..T..T..C..G.....T..T.....G........G.....CG....CC.C.....G.....G..T.....A. MT501378.1_Hybognathus_amarus_is ......G..T..T.....G..C..T..T..T........T.....T..CG....CC.T........T.....T..C..A. MT501385.1_Notropis_jemezanus_vo ......G..T........G..C..T..C..A.................CG.C..CC.............C..T.....A. MT501391.1_Rhinichthys_osculus_i ...G.....G........G.....T..C..T..G.....T..C..A..CC.C..CC.T.....G................ MT667239.1_Rhinichthys_osculus_t G..G.....A........G.....T..C..T..G.....T..C..A..CC.C..CC.T.....G................ MT667242.1_Luxilus_cornutus_vouc G........T........G.....T..T..T........T........CG.G..CC.C..........T...T.....A. MW300340.1_Hybognathus_placitus_ G........T...........C..T..C...........T..G......G....CC.C........T.....T..C..G. MW300341.1_Hybognathus_placitus_ G........T...........C..T..C...........T..G......G....CC.C........T.....T..C..G. NC_013763.1_Mylocheilus_caurinus ...G.................C..TT....T.....T........G..C.....CC.C.....G................ NC_033926.1_Opsopoeodus_emiliae_ .........T..T...........T..T.T.........T..T.....CC.G..CC................T.....A. NC_037008.1_Notropis_chalybaeus_ ......G..T..T..G..G.....T..T...........T........TG.....C.C..............T.....A. NC_037009.1_Notropis_heterolepis T..G.....T..............T..T...........T..G..T..TG....CC.C..............T.....A. NC_037010.1_Rhinichthys_obtusus_ G..G..G...........G.....T..T.....G.....T..C..A..C.....CC.T.....G........C....... NC_037014.1_Notropis_hudsonius_i .........T..T..C..G..C..T..T.....G..............CG.G..CC.C.....G........C.....A. NC_037015.1_Exoglossum_maxilling G........A........G.....T..T..T..G.....T.....A..C.....CC.G..C................... NC_054086.1_Ptychocheilus_lucius ...G.....GG..........C..T....................A..T......C.G..........T...G....... NC_054257.1_Gila_cypha_isolate_S ...G.....AG..........C.......................A..T......C.G..........T........... NC_054259.1_Gila_nigrescens_isol ...G.....GG.......G..C..T....................A..T......C.G........T.T........... NC_054260.1_Hybognathus_amarus_i ......G..T..T.....G..C..T..T..T........T.....T..CG....CC.T........T.....T..C..A. NC_054262.1_Notropis_jemezanus_v ......G..T........G..C..T..C..G.................CG.C..CC.............C..T.....A. Pimephales_notatus_R2S3_________ ............T........C.....T........T..T.....A..TG.G..CC................T.....A. Pimephales_tenellus_tenellu_R2S1 .........T..T.....G.....T..T...........T........CG....CC.G..............T.....A. Pimephales_tenellus_parvice_R2S2 .........T..T.....G.....T..T...........T........CG....CC.G..............T.....A. Pimephales_notatus_R1S1_________ ............T........C.....T........T..T.....A..TG.G..CC................T.....A. MG570452.1_Pimephales_promelas_i .........T..T.....G..C..T..T...........T.....T..CG.....C................T..C..A. MG570452.1_Pimephales_promelas_S .........T..T.....G..C..T..T...........T.....T..CG.....C................T.....A. AB626850.1_Megalobrama_terminali GAATCACAGGAGAATGAGATATAAACAACATATCAAGCCCCGTCGCTAGCACAATAATTATTACTGCCCTAGCACTTAAA AP010779.1_Mylocheilus_caurinus_ ....T...........G.....G.....T.......A....A.T..C...G.......C...G....T..G......... AP011215.1_Gila_sp._1460_mitocho ..........G.GG..G..C..G.GTG.T..G....AT...A.T..C...G.....G.C..CG.C...........C... AP011263.1_Scardinius_erythropht ....T.TG..G..G...........T..........A....A.......T.....G........C..T........C..G AP011267.1_Algansea_lacustris_mi .GGC............GAGC..G.CT..T.....GGA...AC.T..C...G........C..G.....T..........G AP011268.1_Yuriria_alta_mitochon .G..T.....C......AG...G.CT.....G..GGA...AA.T..C.C.G........C..G.C...........C... AP011273.1_Hybognathus_nuchalis_ ....T.....G......A....G.CT..T..G..GGA...AA....C.C.G........C..G.C...T.G......... AP011274.1_Couesius_plumbeus_mit .GC..GTG..G..C.....C..G...........C......A.T.....TG.....G.....G................. AP011275.1_Platygobio_gracilis_m ...CT..C..G...........GGCT.....G....AT..AA....C.C.G.......CC.CG.C..............G AP011277.1_Erimystax_dissimilis_ ....A.......CG.....C.....T..........A....A.T..C...G.....G.C..GG.C..............G AP011279.1_Pimephales_promelas_m ....T...................CT..T.......A...AA......CTG....T...C..G.C...T.G......... AP011280.1_Clinostomus_elongatus .G..T.....GAC....A....GG.T..T.......A....A.T..C...G.......C..CG.......G......... AP012079.1_Luxilus_chrysocephalu .G..T.....G......AC...G.CT..T..G...GA...AA....C.C.G........C..G.C..T..G........G AP012080.1_Macrhybopsis_gelida_m ...CT...................CT..T.......AT..AAC...C.CAG........C.CG................G AP012083.1_Notropis_atherinoides ....T..C.........A.CG..GCT..T..G..GGA...AA.T....CTG........C..G.C........G..G..G AP012084.1_Notropis_baileyi_mito ....T..G..G..G...AGC....CT..T..G..GGA...AA.T..C.C.G........C..G.C...T........... AP012087.1_Cyprinella_galactura_ .G........G.......C.....CT..T.....GGA...G.......C.G..G.....C..G....G..TT.......G AP012088.1_Hybopsis_lineapunctat ....T............A....GGCT...........T..AC....C.C......G...C..G.C............... AP012090.1_Luxilus_cornutus_mito .G..T.............GC..G.CT..T..G..CGAT..AA....C.C.G........C..G.C..AT........... AP012091.1_Lythrurus_ardens_mito .G..T..G...AC...G..C....CA..T......GA...AA.T..C.C.G........C..G.C...T........... AP012092.1_Lythrurus_fumeus_mito ...........AC...G.......CT..T..G....A...AA....C.C..........C..G.C...T..........G AP012093.1_Lythrurus_lirus_mitoc .G..T..G..GAC......C....CA.GT..G..G.A...GA.T..C.C.G........C..G.C............... AP012094.1_Lythrurus_umbratilis_ .G..T..G...AC...G..C....CA..T......GA...AA.T..C.C.G........C..G.C...T........... AP012095.1_Macrhybopsis_meeki_mi ...CT...................CT.........GAT..AAC...C.CAG.......CC.CG.C...T........... AP012097.1_Notropis_bifrenatus_m ............GG..........CT.....G...CA...AA.A....C.G........C..G.C............... AP012098.1_Pimephales_sp._MCZunc ....T.....T.C......G..G.C...T.......A...AA....C.C.G........C..G.C...T........... AP012100.1_Notropis_telescopus_m .............G...AG...G.CT..T..G...GA...AA....C.C.G........C.CG.C............... AP012101.1_Pimephales_notatus_mi ....T.....T.C......G....C...........A...AA....C.C.G........C..G.C...T........... AP012102.1_Pimephales_vigilax_mi ....T.....CAT...........CT..T.......AT..AA.T..C.C..........C..G.C...T........... AP012103.1_Pogonichthys_macrolep ....T..G.....G..G..C.......GT..G..G.A...TA.T..C.........G.......C............... AP012106.1_Richardsonius_balteat .G..T.....G.C.........GG.T.GTT......A....A.T..C...G...........G.C........G.....G AP012108.1_Notropis_chrosomus_mi .G..T.....G.....GA.C..G.CT.GT......GA...AA....C.C.G........C..G.C...T........... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....T.....CAT...........CT..T.......AT..AA.T..C.C..........C..G.C...T........... Pimephales_vigilax_R1S3_________ ....T.....CAT...........CT..T.......AT..AA.T..C.C..........C..G.C...T........... DQ536429.1_Notropis_stramineus_m ....T.....G......AG...G.CT........GGA...TA....C.C.G.G..G...C.CG.C.....G......... JX910141.1_Squaliobarbus_curricu ................G..C........T..G.........A.T..C.A...................T........... KC351187.1_Squaliobarbus_curricu ................G..C........T..G.........A.T..C.A...................T........... KT278765.1_Pimephales_promelas_m ....T...........G.......CT..........A...AA.....GCTG....T...C..G.C...T.G......... KT289925.1_Pimephales_promelas_m ....T.................G.CT..T.......A...AA......CTG....T...C..G.C...T.G......... KT424924.1_Rhinichthys_osculus_m .G..T.....GAC...G..C..G..T..T..G..T.AT.....T..C...G.....G..G..G.C..............G KU200257.1_Chanodichthys_ilishae ...................C................A....C.T...........GG.C...........G......... MF972070.1_Siphateles_bicolor_mo .GG.T.......TG..G..C..GGGT..T.......A....A.T..C...G.......CG.CG.C............... MG570407.1_Notropis_chalybaeus_v .................AGC....CT..T.......AT..AA....C.C.G........C..G.C........G...... MG570408.1_Notropis_bifrenatus_v ............GG..........CT.....G...CA...AA.A....C.G........C..G.C............... MG570413.1_Notropis_heterolepis_ ...C......C..G...A.C....CT..T..G..GGA...AA.T..C.C.G........C....C..T...........G MG570416.1_Rhinichthys_obtusus_v ..C.T..G..GA.C..G........TG.T..G....A....A.T..C...G.....G.C.....C............... MG570417.1_Rhinichthys_obtusus_v ..C.T..G..GA.C..G........TG.T..G....A....A.T..C...G.....G.C.....C............... MG570420.1_Pimephales_notatus_vo ....T.....T.C......G..G.C...T.......A...AA....C.C.G........C..G.C...T........... MG570443.1_Notropis_hudsonius_is ..G.T......C.G.....C..G.TT..T..G..T.A....A.T..C...G........C..G.C........G...... MG570444.1_Rhinichthys_atratulus ..C.T..G....GC........G..TG.T............A.T..C...G.G...G.....G.C..............G MG570445.1_Rhinichthys_atratulus ..C.T..G..G.GC........G..TG.T............A.T..C...G.G...G.....G.C..............G MG570447.1_Luxilus_cornutus_isol ....T...........G.GC..G.CT..T.....CGAT..AA....C.C.G........C..G.C..AT..........G MG570449.1_Luxilus_cornutus_isol ....T...........G.GC..G.CT..T.....CGAT..AA....C.C.G........C..G.C..AT..........G MG570450.1_Pimephales_notatus_is ....T.....T.C......G..G.C...T.......A...AA....C.C.G........C..G.C...T........... MG570451.1_Notropis_bifrenatus_i ............GG..........CT.....G...CA...AA.A....C.G........C..G.C............... MG570453.1_Exoglossum_maxillingu ....A.......CG.....C.....T..........A....A.T..C...G.....G.C..GG.C..............G MG570454.1_Pimephales_promelas_i ....T...................CT..T.......A...AA......CTG....T...C..G.C...T.G......... MG570455.1_Notropis_atherinoides ....T..C.........A.....GCT..T..G..GGA...GA.T....CTG........C..G.C........G..G..G MG570456.1_Notropis_atherinoides ....T..C.........A.C...GCT..T..G..GGA...AA.T....CTG........C..G.C........G..G..G MG570457.1_Pimephales_notatus_is ....T.....T.C......G..G.C...T.......A...AA....C.C.G........C..G.C...T........... MG570458.1_Pimephales_notatus_is ....T.....T.C......G..G.C...T.......A...AA....C.C.G........C..G.C...T........... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ....T..C..G..G..GA....G.CT.G......GGA...AA....C.C.G........C....C............... MT364325.1_Hybognathus_amarus_mi ....T..C..G...........GGCT.GT......GA...AA....C.C.G........C..G.......G........G MT501368.1_Gila_cypha_isolate_SN .GG.........GG..G..C..G.GTG.T.......A....A.T..C.........G.C..C..C.....G..G...... MT501369.1_Notropis_simus_pecose ....T..G..G..G...A....GGCT.G...G..CGAG..AAC...C.C.G....G...C..G.C.....G.....C... MT501378.1_Hybognathus_amarus_is ....T..C..G...........GGCT.GT......GA...AA....C.C.G........C..G.......G........G MT501385.1_Notropis_jemezanus_vo .GG.T..T..G..G...A....GGCT.GT..G..GGA...TA.T....CTG........C..G.C.....G.....A... MT501391.1_Rhinichthys_osculus_i .GC.........T.........G..T..TG....T.A......T..C..TG...........G.......G........G MT667239.1_Rhinichthys_osculus_t .GC.........T.........G..T..TG....T.A......T..C..TG.G.........G.......G........G MT667242.1_Luxilus_cornutus_vouc ....T...........G.GC..G.CT..T.....CCAT..AA....C.C.G........C..G.C..AT..........G MW300340.1_Hybognathus_placitus_ .GG.T.....C......AGC..G.CA..T..G...GA...AA......C.G....G..CC..G.C.....G......... MW300341.1_Hybognathus_placitus_ .GG.T.....C..G...AGC..G.CA..T..G...GA...AA......C.G....G..CC..G.C.....G......... NC_013763.1_Mylocheilus_caurinus ....T...........G.....G.....T.......A....A.T..C...G.......C...G....T..G......... NC_033926.1_Opsopoeodus_emiliae_ ..G.T..T...AC....A....T.TT..T...A...A...A..T....CA.T.......T.A..C..AT.......A... NC_037008.1_Notropis_chalybaeus_ .................AGC....CT..T.......AT..AA....C.C.G........C..G.C........G...... NC_037009.1_Notropis_heterolepis ...C......C..G...A.C....CT..T..G..GGA...AA.T..C.C.G........C....C..T...........G NC_037010.1_Rhinichthys_obtusus_ ..C.T..G..GA.C..G........TG.T..G....A....A.T..C...G.....G.C.....C............... NC_037014.1_Notropis_hudsonius_i ..G.T......C.G.....C..G.TT..T..G..T.A....A.T..C...G........C..G.C........G...... NC_037015.1_Exoglossum_maxilling ....A.......CG.....C.....T..........A....A.T..C...G.....G.C..GG.C..............G NC_054086.1_Ptychocheilus_lucius ..........G.GG...........T..T.......AT...A.T..C.........G.C..CG.C.....G........G NC_054257.1_Gila_cypha_isolate_S .GG.........GG..G..C..G.GTG.T.......A....A.T..C.........G.C..C..C.....G..G...... NC_054259.1_Gila_nigrescens_isol ..........GAGC..G..C..G.GTG.T..G....A....A.T..C.........G.C..CG.C........G..C... NC_054260.1_Hybognathus_amarus_i ....T..C..G...........GGCT.GT......GA...AA....C.C.G........C..G.......G........G NC_054262.1_Notropis_jemezanus_v .GG.T..T..G..G...A....G.CT.GT..G..GGA...TA.T....CTG........C..G.C.....G.....A... Pimephales_notatus_R2S3_________ .......G..T.C...G..A....C...T.......A...A.......C.G........C..G.C...T........... Pimephales_tenellus_tenellu_R2S1 ....T.....C.C...........CT..T......GA...AA....C.CTG........C..G.C...T....G...... Pimephales_tenellus_parvice_R2S2 ....T..G..C.C...G.......CT..T..G...GA...AA....C.CTG........C..G.C...T....G...... Pimephales_notatus_R1S1_________ .......G..T.C...G..A....C...T.......A...A.......C.G........C..G.C...T........... MG570452.1_Pimephales_promelas_i ....T...................CT..T.......A...AA......CTG....T...C..G.C...T.G......... MG570452.1_Pimephales_promelas_S ....T...................CT..T.......A...A.......CTG....T...C..G.C...T.G......... AB626850.1_Megalobrama_terminali ATTGGACTAGCACCAATACACTTCTGAATACCAGAAGTCCTACAAGGACTAGACCTTCTAACAGGCCTAATCTTATCAAC AP010779.1_Mylocheilus_caurinus_ ..............C..............G..T..G..AT.G..G........T..C..T..G.....G..T.....T.. AP011215.1_Gila_sp._1460_mitocho ...........G..C...........G.....T.....TT.......GT........T....C..G.....T..G..C.. AP011263.1_Scardinius_erythropht .....CT.......T...........G........G..TA........T........T.......A.....TC.C..G.. AP011267.1_Algansea_lacustris_mi .....G....................G..G..C.....AT.......C......T.A..C.....T..G..TC.C..T.. AP011268.1_Yuriria_alta_mitochon .....TT..........G........G.....T.....A..C.....GT....TT.AT.G.....GT....TC.C..T.. AP011273.1_Hybognathus_nuchalis_ ..........................G.....T.....A..C.....C......T.AT....G..AT.....C....C.. AP011274.1_Couesius_plumbeus_mit G.....T.......C..............G..T..G..GA........T........T.......A.....TC.G..C.. AP011275.1_Platygobio_gracilis_m ...........C..G.....T...........T.....AT.......G........AT.......G..C...C.C..C.. AP011277.1_Erimystax_dissimilis_ ......T......................G..T..G..AT................C.CC..G........T.....C.. AP011279.1_Pimephales_promelas_m .....C..............T..T........T.....AT.............TT.AT.......A..T..TC.G..T.. AP011280.1_Clinostomus_elongatus ..............T.................T..G..AT..........G..T..CT....G..AT....T........ AP012079.1_Luxilus_chrysocephalu ........G...........T...........T..G..A..C..G...T.......A........G...G.TC.C..C.. AP012080.1_Macrhybopsis_gelida_m .....G.....C........T...........T.....AT........T.......AT.......A..T..TC....T.. AP012083.1_Notropis_atherinoides ...........G.....G..T.....G..G..C..G..T.........T.....T.GT.......A.....TC....T.. AP012084.1_Notropis_baileyi_mito ....................T..............G..AT........T.......AT.......AT.G...C....T.. AP012087.1_Cyprinella_galactura_ ....................T..T........T..G..AT.G..............AT.......A......C.C..T.. AP012088.1_Hybopsis_lineapunctat ......T...............................A..T.....GT.G..TT.AT....G..AA....TC....... AP012090.1_Luxilus_cornutus_mito ..............T.....T...........T.....G..C..............AA.G.....A.....TC....C.. AP012091.1_Lythrurus_ardens_mito .....GT....G..T..G..T........G..C.....A.....G...........GT.G..C..AT.G..TC.C..T.. AP012092.1_Lythrurus_fumeus_mito ......T.......T..G..............C.....GT....G..GT.G...T.AT.......AT....TC.C..T.. AP012093.1_Lythrurus_lirus_mitoc ...........G..T.....T.....G..G..C.....G..G..G..GT.......GT....C..GT.G...C.C..T.. AP012094.1_Lythrurus_umbratilis_ .....GT....G..T..G..T.....G..G..C.....A.....G...........GT.G..C..AT.G..TC.C..T.. AP012095.1_Macrhybopsis_meeki_mi ...........C..G.....T...........T.....AT........T.......AT.G.....A..T...C....T.. AP012097.1_Notropis_bifrenatus_m ........G...........T...........T.....AT.G......T.....T.AT.......AT....TC....T.. AP012098.1_Pimephales_sp._MCZunc ..............T.....T..T........T..G..AT.G............T.AT.......A.....TC.C..... AP012100.1_Notropis_telescopus_m .....GT.............T...........T.....A.....G..G......T.A..C..C..GT.G...C.G..G.. AP012101.1_Pimephales_notatus_mi ..............T.....T..T........T..G..AT.G............T.AT.......A.....TC.C..... AP012102.1_Pimephales_vigilax_mi ...........G..C..G..T........G..T.....A...............T.GT....G...T.G..TC....T.. AP012103.1_Pogonichthys_macrolep ..C.....T.....C..G..T...........T.....GT.......G..G..T..C..C..G........T.....C.. AP012106.1_Richardsonius_balteat ........G.....T...........G..G..T..G..AT.G..G..G..G..T.....C.....A..G..TC.C..... AP012108.1_Notropis_chrosomus_mi .................G..T........G..C..G..GA.G..G.........T.AT.......A.....TC.G..C.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...........G..C..G..T........G..T.....A...............T.GT....G...T.G..TC....T.. Pimephales_vigilax_R1S3_________ ...........G..C..G..T........G..T.....A...............T.GT....G...T.G..TC....T.. DQ536429.1_Notropis_stramineus_m .....T........T..G.....T..G..G..T..G..A.....G..G..C...T.GT.G..C..GT.G..TC.T..T.. JX910141.1_Squaliobarbus_curricu ..C...T..........G...........G........T..............T..CT.......G..G..T........ KC351187.1_Squaliobarbus_curricu ..C...T..........G...........G........T..............T..CT.......G..G..T........ KT278765.1_Pimephales_promelas_m ....................T..T........T..G...T.............TT.GT.G.....A..T..TC.G..T.. KT289925.1_Pimephales_promelas_m .....T..............T..T........T.....AA.............TT.AT.......A..T..TC.G..T.. KT424924.1_Rhinichthys_osculus_m G....G.....G.....G...........G..T.....A.....G..G.....T..C..C.....G...G.T..G..T.. KU200257.1_Chanodichthys_ilishae .............................G........A..........................G.....T........ MF972070.1_Siphateles_bicolor_mo ..............T..............G..T..G..TT.G......T........T....C..A.....T........ MG570407.1_Notropis_chalybaeus_v .......................T..............A.........T.......AT.......AT....T.....T.. MG570408.1_Notropis_bifrenatus_v ........G...........T...........T.....AT.G......T.....T.AT.......AT....TC....T.. MG570413.1_Notropis_heterolepis_ ....................T.....G.....T.....GT....G..CT.....T.AT....C..A.....TC.C..C.. MG570416.1_Rhinichthys_obtusus_v ......T.........................T.....GT....G..C.....T..C..T..C..A...G.T.....T.. MG570417.1_Rhinichthys_obtusus_v ......T.........................T.....GT....G..C.....T..C..T..C..A...G.T.....T.. MG570420.1_Pimephales_notatus_vo ..............T.....T..T........T..G..AT.G............T.AT.......A.....TC.C..... MG570443.1_Notropis_hudsonius_is ..C..T..C.....T.....T...........T.....G.........T.G...T.AT.G.....A.....T........ MG570444.1_Rhinichthys_atratulus .....GT......................G..T.....AT.G..G..C........C..T..C..A.....T..G..T.. MG570445.1_Rhinichthys_atratulus .....GT......................G..T.....AT.G..G..C........C..T..C..A.....T..G..T.. MG570447.1_Luxilus_cornutus_isol ..............T.....T...........T.....G..C..............AA.G.....A.....TC....C.. MG570449.1_Luxilus_cornutus_isol ..............T.....T...........T.....G..C..............AA.G.....A.....TC....C.. MG570450.1_Pimephales_notatus_is ..............T.....T..T........T..G..AT.G............T.AT.......A.....TC.C..... MG570451.1_Notropis_bifrenatus_i ........G...........T...........T.....AT.G......T.....T.AT.......AT....TC....T.. MG570453.1_Exoglossum_maxillingu ......T......................G..T..G..AT................C.CC..G........T.....C.. MG570454.1_Pimephales_promelas_i .....T..............T..T........T.....AA.............TT.AT.......A..T..TC.G..T.. MG570455.1_Notropis_atherinoides ...........G.....G..T........G..C..G..T.....G...T.....T.GT.G.....A......C....T.. MG570456.1_Notropis_atherinoides ...........G.....G..T.....G..G..C..G..T.........T.....T.GT.......A.....TC....T.. MG570457.1_Pimephales_notatus_is ..............T.....T..T........T..G..AT.G............T.AT.......A.....TC.C..... MG570458.1_Pimephales_notatus_is ..............T.....T..T........T..G..AT.G............T.AT.......A.....TC.C..... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ........G..G.....G..T.....G.....T.....AA....G...T.....T.AT.......A.....TC....T.. MT364325.1_Hybognathus_amarus_mi .................G..............T..G..A..C.....C......T.GT.......AT.G...C....C.. MT501368.1_Gila_cypha_isolate_SN ...........C..T..G..............T.....TT....G..GT....T...T....C..A.....T.....C.. MT501369.1_Notropis_simus_pecose ........G.....C..G..T..T........C..G..AT.G..G...T.......GT.G..C..G.....T.....C.. MT501378.1_Hybognathus_amarus_is .................G..............T..G..A..C.....C......T.GT.......AT.G...C....C.. MT501385.1_Notropis_jemezanus_vo .....G...........G..T.....G..G..C..G..TA..............T.GT.......A......C.G..T.. MT501391.1_Rhinichthys_osculus_i .....G..G.................G..G..T..G..AT.......G..G..T..C..C.....A...G.T..G..T.. MT667239.1_Rhinichthys_osculus_t .....G..G.................G..G..T..G..AT.......G..G..T..C..C.....A...G.T..G..T.. MT667242.1_Luxilus_cornutus_vouc ..............T.....T...........T.....G..C..............AA.G.....A.....TC....C.. MW300340.1_Hybognathus_placitus_ .................G..T...........T..G..A..C.....CT.G..TT.AT.G.....T.....TC.C..C.. MW300341.1_Hybognathus_placitus_ ..............T..G..T...........T..G..A..C.....CT.G..TT.AT.G.....T.....TC.C..C.. NC_013763.1_Mylocheilus_caurinus ..............C..............G..T..G..AT.G..G........T..C..T..G.....G..T.....T.. NC_033926.1_Opsopoeodus_emiliae_ ......T.......T.....T.................A.........T..A....GTC......AT..........G.. NC_037008.1_Notropis_chalybaeus_ .......................T..............A.........T.......AT.......AT....T.....T.. NC_037009.1_Notropis_heterolepis ....................T.....G.....T.....GT....G..CT.....T.AT....C..A.....TC.C..C.. NC_037010.1_Rhinichthys_obtusus_ ......T.........................T.....GT....G..C.....T..C..T..C..A...G.T.....T.. NC_037014.1_Notropis_hudsonius_i ..C..T..C.....T.....T...........T.....G.........T.G...T.AT.G.....A.....T........ NC_037015.1_Exoglossum_maxilling ......T......................G..T..G..AT................C.CC..G........T.....C.. NC_054086.1_Ptychocheilus_lucius ..............T..G..............T.....TT....G..GT........T....C..A.....T..G..C.. NC_054257.1_Gila_cypha_isolate_S ...........C..T..G..............T.....TT....G..GT....T...T....C..A.....T.....C.. NC_054259.1_Gila_nigrescens_isol ..............C...........G.....T.....TT....G..GT....T...T....C..G.....T..G..C.. NC_054260.1_Hybognathus_amarus_i .................G..............T..G..A..C.....C......T.GT.......AT.G...C....C.. NC_054262.1_Notropis_jemezanus_v .....G...........G..T.....G..G..C..G..TA..............T.GT.......A......C.G..T.. Pimephales_notatus_R2S3_________ ..............T.....T.....G.....T.....A...............T.AT.G.....A.....TC.C..T.. Pimephales_tenellus_tenellu_R2S1 .....C........T...........G.....T.....AT.G............T.AT.......A.....TC.C..T.. Pimephales_tenellus_parvice_R2S2 .....C........G...........G.....T.....AT.G............T.AT.......A.....TC.C..T.. Pimephales_notatus_R1S1_________ ..............T.....T.....G.....T.....A.........T.....T.AT.G.....A.....TC.C..T.. MG570452.1_Pimephales_promelas_i .....T..............T..T........T.....AA.............TT.AT.......A..T..TC.G..T.. MG570452.1_Pimephales_promelas_S .....C..............T..T........T.....AT.............TT.AT.......A..T..TC.G..T.. AB626850.1_Megalobrama_terminali ATGACAAAAGCTTGCCCCATTTGCCCTAATTATCCAAACAGCCCAAGCCGTGGACCCCGCACTATTAACTGCCCTAGGAA AP010779.1_Mylocheilus_caurinus_ C.................GC.......T..C..T..............T..T..T...TT...GC....GA.G..C...C AP011215.1_Gila_sp._1460_mitocho C..............T..GC....A..C.....T..G...........T..C......CT...GC.C..GA....G..CC AP011263.1_Scardinius_erythropht C.....G........A...C.......T........G........GT.TA.T..T...CTC..GC....A...T.....C AP011267.1_Algansea_lacustris_mi C..................C.......TC.A..T..G...........TT.T.....ACTT..CC.C..AA....C...C AP011268.1_Yuriria_alta_mitochon C..G.....A.........C.........................G..TT.T.....ACTT..CC.C..A...T.C...C AP011273.1_Hybognathus_nuchalis_ C..G..G..A........TC.............T..............TT.T.....GCTC..CC.T..A.....T...C AP011274.1_Couesius_plumbeus_mit C.....G..A........GC....A..T.........GT.........T..T......TT....C.C..A.....C...C AP011275.1_Platygobio_gracilis_m C..G..G........T...C.C.....T...........C..T..G..GT.T.....ACTT..CC.C..A.....C...C AP011277.1_Erimystax_dissimilis_ T........A........CC.C.....T.....T..............TA.T......CT...CC.T..CA.A..G...C AP011279.1_Pimephales_promelas_m C..G.....A........CC.C.....G....................TT.T.....ACTT..CC.T..GA....C...C AP011280.1_Clinostomus_elongatus .........A.........C.C.....C.....T..G...........TA.T......CTG...C.C..G..A......C AP012079.1_Luxilus_chrysocephalu C........A........GC.......G..C..T........T......T.C.....ACTT..CC.C..A.....T...C AP012080.1_Macrhybopsis_gelida_m T........A.....A..CC.G.....T..C..T........T.....AT.C.....ACTT...C.TT.A...T.....C AP012083.1_Notropis_atherinoides C.....G..............C.........G.T..G..G.........T.C.....GCTT..TC.C..A.....T..CC AP012084.1_Notropis_baileyi_mito C........A.........C.......G..C..T..............TT.T.....ACTT..GC.C..A.....T..GC AP012087.1_Cyprinella_galactura_ C........A....................C..T..G...T.A.....AT.T.....GCTT..CC.C..C.........C AP012088.1_Hybopsis_lineapunctat C........A.........C.....T.......T..G..G........TT.C.....GCTT..CC.T..AA....C...C AP012090.1_Luxilus_cornutus_mito C........A.........C.......C.....T...............T.C.....ACTT..CC.C..G.....T.C.C AP012091.1_Lythrurus_ardens_mito C........A........GC....A........T..............TT.C.....ACTT..GC.T..G.....T..CC AP012092.1_Lythrurus_fumeus_mito C.....G..A.........C....A..G...........G.........T.C.....ACTT..GC.T..A..T..T...T AP012093.1_Lythrurus_lirus_mitoc C..G.....A........CC....A..G..C..T...........G..TT.T.....ACTC...C.T..G.....T..CC AP012094.1_Lythrurus_umbratilis_ C........A........GC....A........T..............TT.C.....ACTT..GC.T..G.....T..CC AP012095.1_Macrhybopsis_meeki_mi C.....G........T..CC.A.....T.....T........T.....AT.C......CTT..CC.TT.A...T....CC AP012097.1_Notropis_bifrenatus_m C........A..A..T...C....T..T..C..T...............T.T.....ACTC..CC.T..A...T.T...C AP012098.1_Pimephales_sp._MCZunc C.....G..A..G.....CC............................TT.T..T..ATTT..CC.C..G.....T...C AP012100.1_Notropis_telescopus_m C........A.........C.....T.......A...........G..TT.C.....ACTT..CC.C..A.....C..CC AP012101.1_Pimephales_notatus_mi C.....G..A..G.....CC............................TT.T..T..ATTT..CC.C..G.....T...C AP012102.1_Pimephales_vigilax_mi T.................CC.......GC...........T.......TT.T..T..AT.T...C.T..A.....T..GC AP012103.1_Pogonichthys_macrolep C...........C......C.C.....T..C..T...........GA.TA.T......TTG...C....AA.A..C...C AP012106.1_Richardsonius_balteat C.................GC.C.....C...G.T...............A.T......CTG...C.T..A.........C AP012108.1_Notropis_chrosomus_mi C..G.....A..C.....CC.......C.....T..........C.A..T.C..T..ACTT...C.C..G.....T..GC AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T.................CC.......GC...........T.......TT.T..T..AT.T...C.T..A.....T..GC Pimephales_vigilax_R1S3_________ T.................CC.......GC...........T.......TT.T..T..AT.T...C.T..A.....T..GC DQ536429.1_Notropis_stramineus_m C..G..G........T..CC.............G........T.....TT.C.....AA.T..TC.T..G.....T..GC JX910141.1_Squaliobarbus_curricu C........A..C........C........C....................A.....AAT....C.............G. KC351187.1_Squaliobarbus_curricu C........A..C........C........C....................A.....AAT....C.............G. KT278765.1_Pimephales_promelas_m C........A........CC.C.....G...G.T...........G..TT.T.....ACTT..CC.T..GA....C...C KT289925.1_Pimephales_promelas_m C..G.....A........CC.C.....G.....T..............TT.T.....ACTT..CC.T..G.....C...C KT424924.1_Rhinichthys_osculus_m C.....G..A.........C.C.....C.....T...............A.T.....TTT....C.C..AATT......C KU200257.1_Chanodichthys_ilishae .........A..C........C........C............................T....C............... MF972070.1_Siphateles_bicolor_mo C........A.....T...C....G..C.....T..............TA.T......TT....C...TAA....G..CC MG570407.1_Notropis_chalybaeus_v C........A.........C..........A..T..............TT.T..T..ACTT...C.T..A.....T...C MG570408.1_Notropis_bifrenatus_v C........A..A..T...C....T..T..C..T...............T.T.....ACTC..CC.T..A...T.T...C MG570413.1_Notropis_heterolepis_ C........A..C......C.............T........T.....TT.C.....ACTT..CC.C..A.....T...C MG570416.1_Rhinichthys_obtusus_v C...........C.....GC.C.....C..............T..C..GA.T......TT...GC.C..GA....C..GC MG570417.1_Rhinichthys_obtusus_v C...........C.....GC.C.....C..............T..C..GA.T......TT...GC.C..GA....C..GC MG570420.1_Pimephales_notatus_vo C.....G..A..G.....CC............................TT.T..T..ATTT..CC.C..G.....T...C MG570443.1_Notropis_hudsonius_is C..G...............C.......T....................TT.C..T...CTT..CC.C........T..GC MG570444.1_Rhinichthys_atratulus C.....G.....C......C.C.....T...G.T.....G..T.....AA.T.....TTTG..CC.C..CA....T..GC MG570445.1_Rhinichthys_atratulus C.....G.....C......C.C.....T...G.T........T.....AA.T.....TTTG..CC.C..CA....T..GC MG570447.1_Luxilus_cornutus_isol C........A.........C.......C.....T..G............T.C.....ACTT..CC.C..G.....T.C.C MG570449.1_Luxilus_cornutus_isol C........A.........C.......C.....T..G............T.C.....ACTT..CC.C..G.....T.C.C MG570450.1_Pimephales_notatus_is C.....G..A..G.....CC............................TT.T..T..ATTT..CC.C..G.....T...C MG570451.1_Notropis_bifrenatus_i C........A..A..T...C....T..T..C..T...............T.T.....ACTC..CC.T..A...T.T...C MG570453.1_Exoglossum_maxillingu T........A........CC.C.....T.....T..............TA.T......CT...CC.T..CA.A..G...C MG570454.1_Pimephales_promelas_i C..G..............CC.C.....G.....T..............TT.T.....ACTT..CC.T..GA....C...C MG570455.1_Notropis_atherinoides C.....G..............C.........G.T..G............T.C.....GCTT..TC.C..AA....T..CC MG570456.1_Notropis_atherinoides C.....G..............C.........G.T..G............T.C.....GCTT..TC.C..A.....T..CC MG570457.1_Pimephales_notatus_is C.....G..A..G.....CC............................TT.T..T..ATTT..CC.C..G.....T...C MG570458.1_Pimephales_notatus_is C.....G..A..G.....CC............................TT.T..T..ATTT..CC.C..G.....T...C MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v T..G.....A.........C....G..C.....T...........CA..T.C.....ACTTT.TC.T..A.....T...C MT364325.1_Hybognathus_amarus_mi C..G..G..A........CC.C...........T..............TT.T.....GCTC..CC.T..A.....T...C MT501368.1_Gila_cypha_isolate_SN C..............T...C....T..C.....T........T..G..TA.C......CT...CC.G..A.....G..CC MT501369.1_Notropis_simus_pecose C........A.....A..GC...TG..G...G.T...........G...T.C..T..GTTC..TC.C..G.....T..GC MT501378.1_Hybognathus_amarus_is C..G..G..A........CC.C...........T..............TT.T.....GCTC..CC.T..A.....T...C MT501385.1_Notropis_jemezanus_vo C.................T..C.....G...G.T...........G...T.C......CTT..TC.C..A.....C..CC MT501391.1_Rhinichthys_osculus_i C.....G..A.....T..CC.C.....C.....T...........G...A.T.....TTT....C.T........G...C MT667239.1_Rhinichthys_osculus_t C.....G..A.....T..CC.C.....C.....T...........G...A.T.....TTT....C.T...........GC MT667242.1_Luxilus_cornutus_vouc C........A.........C.......C.....T..G............T.C.....ACTT..CC.C..GA....T.C.C MW300340.1_Hybognathus_placitus_ C........A........CC.C.....G.....T..G........G..TT.T..T..GCTC..CC.T..G.....T...C MW300341.1_Hybognathus_placitus_ C........A........CC.C.....G.....T..G........G..TT.T..T..GCTC..CC.T..G.....T...C NC_013763.1_Mylocheilus_caurinus C.................GC.......T..C..T..............T..T..T...TT...GC....GA.G..C...C NC_033926.1_Opsopoeodus_emiliae_ T.....G..A........CC........C....T............ATGT.TA.....CT...CC.C..AA..T.....C NC_037008.1_Notropis_chalybaeus_ C........A.........C..........A..T..............TT.T..T..ACTT...C.T..A.....T...C NC_037009.1_Notropis_heterolepis C........A..C......C.............T........T.....TT.C.....ACTT..CC.C..A.....T...C NC_037010.1_Rhinichthys_obtusus_ C...........C.....GC.C.....C..............T..C..GA.T......TT...GC.C..GA....C..GC NC_037014.1_Notropis_hudsonius_i C..G...............C.......T....................TT.C..T...CTT..CC.C........T..GC NC_037015.1_Exoglossum_maxilling T........A........CC.C.....T.....T..............TA.T......CT...CC.T..CA.A..G...C NC_054086.1_Ptychocheilus_lucius C........A.....T...C....T..T..C..T..............T..A......CT...GC.G..A........CC NC_054257.1_Gila_cypha_isolate_S C..............T...C....T..C.....T........T..G..TA.C......CT...CC.G..A.....G..CC NC_054259.1_Gila_nigrescens_isol C...........C..T...C....T..C.....T...G.......G..TA.C......CT...GC.G..A.....G..CC NC_054260.1_Hybognathus_amarus_i C..G..G..A........CC.C...........T..............TT.T.....GCTC..CC.T..A.....T...C NC_054262.1_Notropis_jemezanus_v C.................T..C.....G...G.T...........G...T.C......CTT..TC.C..A.....C..CC Pimephales_notatus_R2S3_________ C........A..G.....TC...................G..T.....TT.T.....GTTC..CC.C..A.....C...C Pimephales_tenellus_tenellu_R2S1 C...........C.....CC.......C.....T..............TT.C..T..ACTT..CC.C..G.........C Pimephales_tenellus_parvice_R2S2 C...........C.....CC.......C.....T..............TT.C..T..ACTT..CC.C..G.........C Pimephales_notatus_R1S1_________ C........A..G.....TC...................G..T.....TT.T.....GTTC..CC.C..A.....C...C MG570452.1_Pimephales_promelas_i C..G..............CC.C.....G.....T..............TT.T.....ACTT..CC.T..GA....C...C MG570452.1_Pimephales_promelas_S C..G.....A........CC.C.....G....................TT.T.....ACTT..CC.T..GA....C...C AB626850.1_Megalobrama_terminali TCACATCCACCCTAGTTGGGGGATGAGGAGGTCTAAACCAAACCCAACTACGAAAAATCTTGGCCTACTCCTCGATCGCA AP010779.1_Mylocheilus_caurinus_ ..G.G..T..TT....C..C..C.....C..AT..............T....G..G.....A...........A..T..G AP011215.1_Gila_sp._1460_mitocho .ATTG.....A...A....T..C........G........G.....G..C..G..G..T..A...........A..T... AP011263.1_Scardinius_erythropht .G.T...A........C........G..C..C..G...........G..G.....G.................A.....C AP011267.1_Algansea_lacustris_mi .T.T..........A....A..C..G..C..GT.G.....G...............G....A...........T..T... AP011268.1_Yuriria_alta_mitochon ..CT.......T....A.....C.....C..AT.G..T.................GG..C.A...........A...... AP011273.1_Hybognathus_nuchalis_ ..........AT....A..C..C.....C..AT......................GG....A.....T..T..A..T..T AP011274.1_Couesius_plumbeus_mit .T.TG.....A...A....C..T...A.C..AT.G....................G....................T..C AP011275.1_Platygobio_gracilis_m ...T.........T..G..A.....G..C..A..T..T........G.....G........A...........A...... AP011277.1_Erimystax_dissimilis_ ....C..T.....C..G..C.....G..C..AT......................G.................A..T... AP011279.1_Pimephales_promelas_m ...T...T...T....A..A..C.....C..AT..........T..G..G..G.....TC....T........A.....C AP011280.1_Clinostomus_elongatus .T.T...T..A..T.....C.....G..T..AT.............GT.G..G..G.....A.....T........T... AP012079.1_Luxilus_chrysocephalu .T.TG..T...T.G..G..A..C.....C..AT.............G.....G.....T..A...........A..T... AP012080.1_Macrhybopsis_gelida_m .............T..A...........T..A........G.....G.....G..G...A.A.....T.....A..T..T AP012083.1_Notropis_atherinoides .T.TG......T.G.....C..C.....C..GT.G.....G..T........C..GG....................... AP012084.1_Notropis_baileyi_mito ...T.......T....G..C..C.....T...T.......G..T...T....G..G.....A.....T.....A.....G AP012087.1_Cyprinella_galactura_ .TG..........T..G..A..G.....G...T.G..T.........T....T..GG..C.A..T........A..T..T AP012088.1_Hybopsis_lineapunctat .T.T...T...T.G..A.....C.....C..G.....T.....T............G..C.A...........A...... AP012090.1_Luxilus_cornutus_mito ...TG..T...T.......T..C..G..C..GT.G....................GG....A.....T.....A...... AP012091.1_Lythrurus_ardens_mito .T.T.......T....G..C........G..AT.G..T........G.....G...G....A.................. AP012092.1_Lythrurus_fumeus_mito .G.TG.....AT....A..C..C.....T..A..C.....G...............G....A........A......... AP012093.1_Lythrurus_lirus_mitoc .T.....T...T....G..C..C.....C..GT.G..T..G.....G.....G...G....A...........A.....G AP012094.1_Lythrurus_umbratilis_ .T.T...T...T....G..C........G..G..G..T........G.....G...G....A...........A...... AP012095.1_Macrhybopsis_meeki_mi ...T.........T..A........G..T..A..............G............C.A.....T.....A..T..C AP012097.1_Notropis_bifrenatus_m .T.T...T...T....A..A..C.....T..AT.......................G.T..A...........A..T... AP012098.1_Pimephales_sp._MCZunc .T.TG..T........A...........T..GT.G............T....T...G....A..T........A..T..G AP012100.1_Notropis_telescopus_m ...T....G....C..A..T..C..G.....GT.............G.....T..GG.GA.......T.....C..T... AP012101.1_Pimephales_notatus_mi .T.TG..T........A...........T..GT..............T....T..GG....A..T........A..T... AP012102.1_Pimephales_vigilax_mi .T.........T....A..A.....G..T..................G.......G.....A...........A..T... AP012103.1_Pogonichthys_macrolep .......A.....G..C..C..C.....T..AT..........T...T.G.....G.....A.....T.....A..T... AP012106.1_Richardsonius_balteat .T.TG..T.....G.....C..G.....T..AT.............GT....G..G...........T.....A...... AP012108.1_Notropis_chrosomus_mi ...T......T..T.....T..C.....C..GT..............T.G..G..GG....A...........A...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .T.........T....A..A.....G..T..................G.......G.....A...........A..T... Pimephales_vigilax_R1S3_________ .T.........T....A..A.....G..T..................G.......G.....A...........A..T... DQ536429.1_Notropis_stramineus_m .T.TG......T.G..G..T..C.....G..G..............G..G..G..GG.T..A..A..T.....A.....G JX910141.1_Squaliobarbus_curricu .G........A.....C..A........C..A.....T.................G...C.A........T..A...... KC351187.1_Squaliobarbus_curricu .G........A.....C..A........C..A.....T.................G...C.A........T..A...... KT278765.1_Pimephales_promelas_m ...T.......T....A..A..G.....C..AT.............G.....G.....TC....T........A.....C KT289925.1_Pimephales_promelas_m ...T...T...T....A..A..G.....C..AT.............G.....G.....TC....T........A.....C KT424924.1_Rhinichthys_osculus_m .T.TG..T..TT..A....A..G........................T.......G.....A...........A..T..G KU200257.1_Chanodichthys_ilishae ...........T.G..C..A...........AT................C...........A...........A..T..G MF972070.1_Siphateles_bicolor_mo .ATT......A..G........C.....G..G........G........T..G....CT..A...........A..T..G MG570407.1_Notropis_chalybaeus_v .T.T...T........A..C..C.....C...T.............GT.........................A..T... MG570408.1_Notropis_bifrenatus_v .T.T...T...T....A..A..C.....T..AT.......................G.T..A...........A..T... MG570413.1_Notropis_heterolepis_ .T.T...T...T..A.C..C..C.....C..AT....T.......................A...........A..T... MG570416.1_Rhinichthys_obtusus_v .ACT...T..T..T..C.....G..G..C..A..G............T.............A.....T.....C..T... MG570417.1_Rhinichthys_obtusus_v .ACT...T..T..T..C.....G..G..C..A..G............T.............A.....T.....C..T... MG570420.1_Pimephales_notatus_vo .T.TG..T........A...........T..GT.G............T....T...G....A..T........A..T..G MG570443.1_Notropis_hudsonius_is ...T...T..G.....C.....C.....C..CT..........A..G.........G....A...........A.....G MG570444.1_Rhinichthys_atratulus .G.T...T..T..T..C..A..G..G..T..CT.G...........GT.G..G..G.....A.....T.....A...... MG570445.1_Rhinichthys_atratulus .G.T...T..T..T..C..A..G..G..T..CT.G...........GT.G..G..G.....A.....T.....A...... MG570447.1_Luxilus_cornutus_isol ...TG..T...T....C..T..C..G..C..AT.G...........G.........G....A.....T.....A...... MG570449.1_Luxilus_cornutus_isol ...TG..T...T....C..T..C..G..C..AT.G...........G.........G....A.....T.....A...... MG570450.1_Pimephales_notatus_is .T.TG..T........A...........T..GT.G............T....T...G....A..T........A..T..G MG570451.1_Notropis_bifrenatus_i .T.T...T...T....A..A..C.....T..AT.......................G.T..A...........A..T... MG570453.1_Exoglossum_maxillingu ....C..T.....C..G..C.....G..C..AT......................G.................A..T... MG570454.1_Pimephales_promelas_i ...T...T...T....A..A..G.....C..AT.............G.....G.....TC....T........A.....C MG570455.1_Notropis_atherinoides ...TG......T.G.....C..C.....C..GT.G.....G..T........C..GG....................... MG570456.1_Notropis_atherinoides .T.TG......T.G.....C..C.....C..GT.G.....G..T........C..GG....................... MG570457.1_Pimephales_notatus_is .T.TG..T........A...........T..GT.G............T....T...G....A..T........A..T..G MG570458.1_Pimephales_notatus_is .T.TG..T........A...........T..GT.G............T....T...G....A..T........A..T..G MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..........AT....C..C..C.....T..GT.............G.....G...G....A...........A...... MT364325.1_Hybognathus_amarus_mi ....G.....AT....A..C..C.....C..AT.......G.....G........G...........T.....A..T..G MT501368.1_Gila_cypha_isolate_SN .ATT......G..G..C..T..T........G........G........C..G.....T..A...........A..T... MT501369.1_Notropis_simus_pecose ...T......TT....G........G..T..AT.............G............C.......T..A........C MT501378.1_Hybognathus_amarus_is ....G.....AT....A..C..C.....C..AT.......G.....G........G...........T.....A..T..G MT501385.1_Notropis_jemezanus_vo ...TG......T..A.C..T..T.....C..GT.G........T........C........A.....T.....A...... MT501391.1_Rhinichthys_osculus_i .A.TG..T..TT.G.....A..G..G..C..G...............T........G.......G...........T... MT667239.1_Rhinichthys_osculus_t .A.TG..T..TT.......A..G.....C..G...............T........G...................T... MT667242.1_Luxilus_cornutus_vouc ...TG..T...T....C..T..C..G..C..AT.G...........G.........G....A.....T.....A...... MW300340.1_Hybognathus_placitus_ ...T.......T.G..G..C..T.....T..AT....T..G...........G..G.....A.....T............ MW300341.1_Hybognathus_placitus_ ...T...T...T.G..G..C..T.....T..AT....T..G...........G..G.....A.....T............ NC_013763.1_Mylocheilus_caurinus ..G.G..T..TT....C..C..C.....C..AT..............T....G..G.....A...........A..T..G NC_033926.1_Opsopoeodus_emiliae_ .A.T......T...A....T........C..A.....T.........T..........TC.A..T........A..T..T NC_037008.1_Notropis_chalybaeus_ .T.T...T........A..C..C.....C...T.............GT.........................A..T... NC_037009.1_Notropis_heterolepis .T.T...T...T..A.C..C..C.....C..AT....T.......................A...........A..T... NC_037010.1_Rhinichthys_obtusus_ .ACT...T..T..T..C.....G..G..C..A..G............T.............A.....T.....C..T... NC_037014.1_Notropis_hudsonius_i ...T...T..G.....C.....C.....C..CT..........A..G.........G....A...........A.....G NC_037015.1_Exoglossum_maxilling ....C..T.....C..G..C.....G..C..AT......................G.................A..T... NC_054086.1_Ptychocheilus_lucius .ACTG.....A...A.C..T..T........G.................C........T..A...........A..T... NC_054257.1_Gila_cypha_isolate_S .ATT......G..G..C..T..T........G........G........C..G.....T..A...........A..T... NC_054259.1_Gila_nigrescens_isol .ATTG.....A...A.C..T..C........G.................C..G.....T..A...........A..T..G NC_054260.1_Hybognathus_amarus_i ....G...G.AT....A..C..C.....C..AT.......G.....G........G...........T.....A..T..G NC_054262.1_Notropis_jemezanus_v ...TG......T..A.C..T..T.....C..GT.G........T..G.....C........A...........A...... Pimephales_notatus_R2S3_________ .TG.G..T........G..T........T..C.....T.........T....T..G...A.A..T........A...... Pimephales_tenellus_tenellu_R2S1 .T..G..TG.......A..C..G.....C..G.....T..............G........A..T........A...... Pimephales_tenellus_parvice_R2S2 .T.....TG..T....A..C..G.....C..G.....T..............G........A..T........A...... Pimephales_notatus_R1S1_________ .TG.G..T........G..T........T..C.....T.........T....T..G...A.A..T........A...... MG570452.1_Pimephales_promelas_i ...T...T...T....A..A..G.....C..AT.............G.....G.....TC....T........A.....C MG570452.1_Pimephales_promelas_S ...T...T...T....A..A..C.....C..AT..........T..G..G..G.....TC....T........A.....C AB626850.1_Megalobrama_terminali CACATAGGCTGAATAATCATCATTCTCCAATACGCCCCACAACTTACCCTTGTTGCCCTAGGAACATATATTTTCATGAC AP010779.1_Mylocheilus_caurinus_ .....G..T..G.....T..T...........T...........C.....CC.C..A...CTG..T.....C..T..A.. AP011215.1_Gila_sp._1460_mitocho ..T..............TG.TG..........T.....C..G..C.....CC....A...CT.........C..T..A.. AP011263.1_Scardinius_erythropht ........G..G..G..T..TG..........T..T..T..G..G.....CC.C......TT.........C..T..... AP011267.1_Algansea_lacustris_mi ..............G..T..TG.......G........G...........CC.C..A...CT...C.....C..G..A.. AP011268.1_Yuriria_alta_mitochon ..T.....A..G.....T..TG....T.....T..A..T.....C......C.C..AT.GTT............A..... AP011273.1_Hybognathus_nuchalis_ .................T..TG....T...C.T..T..C........T..CC.C..AT.GTT............T..... AP011274.1_Couesius_plumbeus_mit .....G..............TG..........T.....C.....C.....CC.C..GG..CT...G........T..A.. AP011275.1_Platygobio_gracilis_m ..T..G..G..G.....T..TG....T..G........T..C.....T..CC.C..A...CT.........CA.A..A.. AP011277.1_Erimystax_dissimilis_ .....G........G..T..TG.A..T.....T.....C............C....A...TT.........C..T..A.. AP011279.1_Pimephales_promelas_m .....G..T........T..TG....T...C.T..T..C..G..C......C....AT..TT...G.....CC.A..A.. AP011280.1_Clinostomus_elongatus ..T.....T......G.T..T...........T.....C..C..C......C....A...CTC..G..C..C..T..A.. AP012079.1_Luxilus_chrysocephalu .....G...........T..TG....T.....T..T..C............C.C..G...CT..T.........A..... AP012080.1_Macrhybopsis_gelida_m ........T.................T.....T..T...........T...C.C..A...CTC.T....G.A..A..A.. AP012083.1_Notropis_atherinoides ........G........GG.TG....T..G..T..T..C............C.C..AT..CT..T.........G..A.. AP012084.1_Notropis_baileyi_mito ........T..G.....T..TG........C.T.....C...........CC.C..AT..CT..........GCA..A.. AP012087.1_Cyprinella_galactura_ .....G..T.....G..T..T..CA.T...C.T..T..C..C..C...T..C.G..GT..CT.GTC.....CC.A..... AP012088.1_Hybopsis_lineapunctat .....G..T...........T..C......C.T.....C...........CC.C..A...TC..T.........A..A.. AP012090.1_Luxilus_cornutus_mito .....G...........TG.TG....T.....T..T..C............C.C..AT..CT..TG........A..... AP012091.1_Lythrurus_ardens_mito ..T..G..............TG....T.....T.....C..G.........C....G..GCT..TG........A..... AP012092.1_Lythrurus_fumeus_mito ..T..G..T.....GG.T..TG....T.....T.....C............C.C..A...CTT.TG.....C..G..A.. AP012093.1_Lythrurus_lirus_mitoc ..T..G.........G.T..TG....T.....T.....C..G.........C....A..CCTG.T.........A..A.. AP012094.1_Lythrurus_umbratilis_ ..T..G...........T..TG....T.....T.....C..G.........C....G..GCT..TG........A..... AP012095.1_Macrhybopsis_meeki_mi ..T.....A........T..TG....T.....T..T........C..G...C.C..A...CTC.T....G.A..A..A.. AP012097.1_Notropis_bifrenatus_m .....G...........T..TG.C..T........T..C............A.A..A...CT..T.........A..... AP012098.1_Pimephales_sp._MCZunc .....G..T..G.....T..TG....T...C.......C..C..C......C....AT..TT......C.....A..A.. AP012100.1_Notropis_telescopus_m ..T..G...........T..T..C..T...C.T.....C.....C...T.CC.C..A..GCTC.TT.............. AP012101.1_Pimephales_notatus_mi .....G..T.....G..T..TG....T...C.......C..C..C......C....AT..TT..T...C.....A..A.. AP012102.1_Pimephales_vigilax_mi ..............G..A..TG..A.T.....TA....T.....C..T...C....TT..TT..TG.....C..A..A.. AP012103.1_Pogonichthys_macrolep .....G...........G..TG.......GC.T.....C.....C.....CC.C..A...CT...C...G.C..T..A.. AP012106.1_Richardsonius_balteat .....G..T........T..TG..........T.....T..G..C......C....A...CT.........C..T..A.. AP012108.1_Notropis_chrosomus_mi .....G........G..T..TG....T..GC.T..T..C...........CC.C..GT..CT..T...C..C..G..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..............G..A..TG..A.T.....TA....T.....C..T...C....TT..TT..TG.....C..A..A.. Pimephales_vigilax_R1S3_________ ..............G..A..TG..A.T.....TA....T.....C..T...C....TT..TT..TG.....C..A..A.. DQ536429.1_Notropis_stramineus_m .....G...........TG.T.....T..GC.T.....T..C.....G..CC....A...CTC..G.....C..G..... JX910141.1_Squaliobarbus_curricu .....G.........G....TG................C.....A.....CC.............G..C........... KC351187.1_Squaliobarbus_curricu .....G.........G....TG................C.....A.....CC.............G..C........... KT278765.1_Pimephales_promelas_m .....G..T.....G.....TG....T...C.T..T..C.....C......C....AT..TT.........CC.A..A.. KT289925.1_Pimephales_promelas_m .....G..T...........TG....T...C.T..T..C.....C......C....AT..TT......C..CC.A..A.. KT424924.1_Rhinichthys_osculus_m .....G..T........T..TG....T.....T...........C......C.C..G...CTG.T.........T..A.. KU200257.1_Chanodichthys_ilishae .................T..T............A..........C........C..............C.....T..... MF972070.1_Siphateles_bicolor_mo ..T..G..............TG..A.......T.....C..G..C......C....A...CT.........C..T..A.. MG570407.1_Notropis_chalybaeus_v ..T..............T..TG....T...C.T..T..C............C.C..AT..TT..T....G....A..A.. MG570408.1_Notropis_bifrenatus_v .....G...........T..TG.C..T........T..C............A.A..A...CT..T.........A..... MG570413.1_Notropis_heterolepis_ ........T........T..TG....T.....T.....C..G..C......C....AT..CT..TG........G..... MG570416.1_Rhinichthys_obtusus_v ...........G.....TG.TG....T..G..T.....G............C....A...CT.GT....G....T..... MG570417.1_Rhinichthys_obtusus_v ...........G.....TG.TG....T..G..T.....G............C....A...CT.GT....G....T..... MG570420.1_Pimephales_notatus_vo .....G..T..G.....T..TG....T...C.......C..C..C......C....AT..TT......C.....A..A.. MG570443.1_Notropis_hudsonius_is ...........G.....T..TG.......G..T..T..C............C.C..AT.GCTG.....CG.C..A..A.. MG570444.1_Rhinichthys_atratulus .................T..TG....T.....T...........C......C....A...CT..T.........T..... MG570445.1_Rhinichthys_atratulus .................T..T.....T.....T...........C......C....A...CT..T.........T..... MG570447.1_Luxilus_cornutus_isol .....G...........TG.TG....T.....T..T..C............C.C..AT..CT..TG........A..... MG570449.1_Luxilus_cornutus_isol .....G...........TG.TG....T.....T..T..C............C.C..AT..CT..TG........A..... MG570450.1_Pimephales_notatus_is .....G..T..G.....T..TG....T...C.......C..C..C......C....AT..TT......C.....A..A.. MG570451.1_Notropis_bifrenatus_i .....G...........T..TG.C..T........T..C............A.A..A...CT..T.........A..... MG570453.1_Exoglossum_maxillingu .....G........G..T..TG.A..T.....T.....C............C....A...TT.........C..T..A.. MG570454.1_Pimephales_promelas_i .....G..T...........TG....T...C.T..T..C.....C......C....AT..TT......C..CC.A..A.. MG570455.1_Notropis_atherinoides ........G........GG.TG....T..G..T..T..C............C.C..AT..CT..TG........A..A.. MG570456.1_Notropis_atherinoides ........G........GG.TG....T..G..T..T..C............C.C..AT..CT..T.........G..A.. MG570457.1_Pimephales_notatus_is .....G..T..G.....T..TG....T...C.......C..C..C......C....AT..TT......C.....A..A.. MG570458.1_Pimephales_notatus_is .....G..T..G.....T..TG....T...C.......C..C..C......C....AT..TT......C.....A..A.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .....G...........T..TG.......GC.T..G..C...........CC.C..AT.GCT..TC.....C..A..A.. MT364325.1_Hybognathus_amarus_mi .................T..TG.C..T.....T..T..C...........CC.C..GT..TT.......G....A..A.. MT501368.1_Gila_cypha_isolate_SN ..T...........G..T..TG..........T.....C.....C.....CC....A...CT.........C..T..A.. MT501369.1_Notropis_simus_pecose ..T.....T..G........TG.C..T..GC.T.....C.....C.....CC.C..G..GCT..TG...G.C..A..A.. MT501378.1_Hybognathus_amarus_is .................T..TG.C..T.....T..T..C...........CC.C..GT..TT............AG.A.. MT501385.1_Notropis_jemezanus_vo ...............G.GG.TG....T..G..T..T..C............C.C..AT..CT..TG........A..A.. MT501391.1_Rhinichthys_osculus_i .....G...........T..TG....T..............C..C......C....A..CCT............T..... MT667239.1_Rhinichthys_osculus_t .....G...........T..TG....T..............C..C......C....A..CCT............T..... MT667242.1_Luxilus_cornutus_vouc .....G...........TG.TG....T.....T..T..C............C.C..AT..CT..TG........A..... MW300340.1_Hybognathus_placitus_ ..T..G.....G.....T.....C..T..GC.T..T..C.....C..T..CC.C..AT.GCT............T..A.. MW300341.1_Hybognathus_placitus_ ..T..G.....G.....T.....C..T..GC.T..T..C.....C..T..CC.C..AT.GCT............T..A.. NC_013763.1_Mylocheilus_caurinus .....G..T..G.....T..T...........T...........C.....CC.C..A...CTG..T.....C..T..A.. NC_033926.1_Opsopoeodus_emiliae_ ..T..G...........T..TG....T...C.T.....C...........CC.C..A...TT.GTG...G....A..... NC_037008.1_Notropis_chalybaeus_ ..T..............T..TG....T...C.T..T..C............C.C..AT..TT..T....G....A..A.. NC_037009.1_Notropis_heterolepis ........T........T..TG....T.....T.....C..G..C......C....AT..CT..TG........G..... NC_037010.1_Rhinichthys_obtusus_ ...........G.....TG.TG....T..G..T.....G............C....A...CT.GT....G....T..... NC_037014.1_Notropis_hudsonius_i ...........G.....T..TG.......G..T..T..C............C.C..AT.GCTG.....CG.C..A..A.. NC_037015.1_Exoglossum_maxilling .....G........G..T..TG.A..T.....T.....C............C....A...TT.........C..T..A.. NC_054086.1_Ptychocheilus_lucius ..T.................T...........T.....C.....C.....CC....A...CT..T......C..T..A.. NC_054257.1_Gila_cypha_isolate_S ..T...........G..T..TG..........T.....C.....C.....CC....A...CT.........C..T..A.. NC_054259.1_Gila_nigrescens_isol ..T..G...........T..T...........T.....C..G..C.....CC....A...CT.........C..T..A.. NC_054260.1_Hybognathus_amarus_i .................T..TG.C..T.....T..T..C...........CC.C..GT..TT.......G....A..A.. NC_054262.1_Notropis_jemezanus_v .................GG.TG....T..G..T..T..C............C.C..AT..CT..TG........A..A.. Pimephales_notatus_R2S3_________ ..T..............T..T.....T...C..A....C.....C.....CC....AT..TT..T.........A..A.. Pimephales_tenellus_tenellu_R2S1 .....G...........T..TG.C..T.....T..T..T..T..C.....CC.C..AT.GTT..T.........A..... Pimephales_tenellus_parvice_R2S2 .....G..T........T..TG.C..T.....T..T..T..T..C.....CC.C..AT.GCT..T.........A..... Pimephales_notatus_R1S1_________ ..T..............T..T.....T...C..A....C.....C.....CC....AT..TT..T.........A..A.. MG570452.1_Pimephales_promelas_i .....G..T...........TG....T...C.T..T..C.....C......C....AT..TT......C..CC.A..A.. MG570452.1_Pimephales_promelas_S .....G..T........T..TG....T...C.T..T..C.....C......C....AT..TT...G.....CC.A..A.. AB626850.1_Megalobrama_terminali ATCCGCAGCATTCCTCACCCTAAAAACATCAGCCGCCACAAAGATCAATACTCTTTCAATAATCTGGTCAAAAAGTCCAA AP010779.1_Mylocheilus_caurinus_ ...T.....G.....T.........GTT...T.............TGGC..C..CG....CG.T..A........C..TG AP011215.1_Gila_sp._1460_mitocho ......G..C.....T...T....G.TT..CT..........AG.T.GC..C...G....T..T..A.......AC..TG AP011263.1_Scardinius_erythropht G..............T.....G...GTT...T..A.......AG...GC..C..CG..G.CG....A..G..G..C..T. AP011267.1_Algansea_lacustris_mi .........C...T.A..A.....GCTC...CA.........TG.T..C..C..CG.G.CCG.......G.....C..TG AP011268.1_Yuriria_alta_mitochon ...T...........A..A..G...CTT...CAT.T......A..T.GC..C..CA...CTG.G...........C..TC AP011273.1_Hybognathus_nuchalis_ C..............A..GT....GCTT...TAT........AG.TGGC..C..AG...CT.CA..A.....G..C..CC AP011274.1_Couesius_plumbeus_mit .........T.....T.....G..GGTC..GT..........A...GGA......G....CG....A........C..T. AP011275.1_Platygobio_gracilis_m .........C.....G..A.....GCTC...T..........AG..GGC..C..CG...CCG....A..G..G..C..T. AP011277.1_Erimystax_dissimilis_ ...T....................GGTT...T.............TGGC.....CG...CCG....A..G.....C..T. AP011279.1_Pimephales_promelas_m ...T...........A..........TG...TA.A.......AG.TGGC..C...G...CC.CA..A........C...C AP011280.1_Clinostomus_elongatus ...T..C..C..............G.GT...T....T........TGG...C..CA....C..T..A.....G.AC..TG AP012079.1_Luxilus_chrysocephalu T..T...........A..A......CTT...CAT..T.....AG.TGG...C...G...CC.C...A..G..G..C..GC AP012080.1_Macrhybopsis_gelida_m ...T...........T..A......TTC..TT....T.....A........G..CG...CC.....A........C..T. AP012083.1_Notropis_atherinoides ......G..G.....A..A......CTT..GTAT........AG.TGGA..C..CG...CC.C......G..G..C..GC AP012084.1_Notropis_baileyi_mito ...T..G..G...T.A..A.....GCTT...TAT........AG.T.G...C...G...CC.CA..A.....G..C..CC AP012087.1_Cyprinella_galactura_ G.....G..G.....G..G..G...GTG...TA.........A..TGG...C..AG...CCGCG..A........C..CC AP012088.1_Hybopsis_lineapunctat ...............A..A......CTT..CTAT........C..TGGA..C...G...CC..A..A........C..TC AP012090.1_Luxilus_cornutus_mito T..T...........A..G......CTT...TAT........AG.TGG...C...G...CC.C......G.....C..GC AP012091.1_Lythrurus_ardens_mito ......G..G..T..G..T..C...CTT..CTAT..T..G..A..TGGC..C...G...CC.CA..A.....G..C...C AP012092.1_Lythrurus_fumeus_mito ............T..G.....T...CTC..CTAT..T..C.....T.....C...G...CC.CG..A..T.....C..GC AP012093.1_Lythrurus_lirus_mitoc ......G..G..T..G..T..C..GCTT..CTATA.T.....AG.TGGC..C...G...CC.CA..A.....G..C...C AP012094.1_Lythrurus_umbratilis_ ......G..G..T..G..T..C...CTT..CTAT..T..G..A..TGGC..C...G...CC.CA..A.....G..C...C AP012095.1_Macrhybopsis_meeki_mi ...T..G...........A......TTT..TT..........A...........CG...CC.CT..A........C..TG AP012097.1_Notropis_bifrenatus_m ...T...........A..A......CTC...TAT..T......G.TGGC..C...G...CC.CA..A.....G.A....C AP012098.1_Pimephales_sp._MCZunc ...T...........A..AT.....CTC...TA.........AG.T.GC..C...G.G.CC.CA..A............C AP012100.1_Notropis_telescopus_m ...A..G..C........AT.....CTT...TAT.........G.TGGC..C..CG...CC.CA...........C..CC AP012101.1_Pimephales_notatus_mi ...T...........A..AT.....CTC...TA.........AG.T.GC..C...G...CC.CA..A........C...C AP012102.1_Pimephales_vigilax_mi ...T........T..A..AT.....CTT..GTA..T.........T..C..C...G...C..CG..A............. AP012103.1_Pogonichthys_macrolep ...T...........T.........GTT...T....T........TGG...C..CG...CCG.T..A..G.....C..T. AP012106.1_Richardsonius_balteat ...T.....G..............G..T...T.T........AG.TGGCT.C..CG....CG.T...........C..TG AP012108.1_Notropis_chrosomus_mi G..............A..A......CTT...TAT........AG.T.....C...G...CCGCA..A........C..TC AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...T........T..A..AT.....CTT..GTA..T.........T..C..C...G...C..CG..A............. Pimephales_vigilax_R1S3_________ ...T........T..A..AT.....CTT..GTA..T.........T..C..C...G...C..CG..A............. DQ536429.1_Notropis_stramineus_m ...T..G........A..A..C..GCTT...TAT.........G.TGGC..C...G...CC.CA..A..G..G.....CC JX910141.1_Squaliobarbus_curricu G....................G.........T..A.......A..T...............GC...A.......AC.... KC351187.1_Squaliobarbus_curricu G....................G.........T..A.......A..T...............GC...A.......AC.... KT278765.1_Pimephales_promelas_m ...T...........A........GCT....TAT........AG.TGG...C...G...CC.CA..A........C...C KT289925.1_Pimephales_promelas_m ...T...........A.........CT....TA.A.......AG.TGGC..C...G...CC.CA..A........C...C KT424924.1_Rhinichthys_osculus_m .............T.A...T......TT...T..........A..T.GC..C..CG...CC..T..A........C..T. KU200257.1_Chanodichthys_ilishae ...............T..T............T..........A.....C..C..C......G....A........C.... MF972070.1_Siphateles_bicolor_mo .........C.....T..........TC..CT..........A..T.G...C..CG..G.TG....A.......AC..TG MG570407.1_Notropis_chalybaeus_v ...T.........T.A..A......CTT...TAT........A..T..C..C..CG...CC.CA..A.....G..C...C MG570408.1_Notropis_bifrenatus_v ...T...........A..A......CTC...TAT..T......G.TGGC..C...G...CC.CA..A.....G.A....C MG570413.1_Notropis_heterolepis_ ...T...........A..A......CTT...TAT.T......A..TGG...C..CG...CC.CT.....G.....C..G. MG570416.1_Rhinichthys_obtusus_v ....T.C........G...T.G..GG.C...T..T.......A..TGGC..C..CG...CC..T..A..T..G..C..T. MG570417.1_Rhinichthys_obtusus_v ....T.C........G...T.G..GG.C...T..T.......A..TGGC..C..CG...CC..T..A..T..G..C..T. MG570420.1_Pimephales_notatus_vo ...T...........A..AT.....CTC...TA.........AG.T.GC..C...G.G.CC.CA..A............C MG570443.1_Notropis_hudsonius_is ...T...........G.....T...CTT..GTA.........A...GGC..C...G...CC.C......G........TG MG570444.1_Rhinichthys_atratulus ....T.C........A...T....GG.C..GT..T.T.....A..TGGC..C..CG...CC..T.....T.....C..T. MG570445.1_Rhinichthys_atratulus ....T.C........A...T....GG.C..GT..T.T.....A..TGGC..C..CG...CC..T.....T....AC..T. MG570447.1_Luxilus_cornutus_isol T..T...........A..A......CTT...TAT........A..TGG...C...G...CC.C......G.....C..GC MG570449.1_Luxilus_cornutus_isol T..T...........A..A......CTT...TAT........A..TGG...C...G...CC.C......G.....C..GC MG570450.1_Pimephales_notatus_is ...T...........A..AT.....CTC...TA.........AG.T.GC..C...G.G.CC.CA..A............C MG570451.1_Notropis_bifrenatus_i ...T...........A..A......CTC...TAT..T......G.TGGC..C...G...CC.CA..A.....G.A....C MG570453.1_Exoglossum_maxillingu ...T....................GGTT...T.............TGGC.....CG...CCG....A..G.....C..T. MG570454.1_Pimephales_promelas_i ...T...........A.........CT....TA.A.......AG.TGGC..C...G...CC.CA..A........C...C MG570455.1_Notropis_atherinoides ......G..G.....A..A..G...CTT..GTAT........AG.TGGG..C..CG...CC.C......G..G..C..GC MG570456.1_Notropis_atherinoides ......G..G.....A..A..G...CTT..GTAT........AG.TGGA..C..CG...CC.C......G..G..C..GC MG570457.1_Pimephales_notatus_is ...T...........A..AT.....CTC...TA.........AG.T.GC..C...G.G.CC.CA..A............C MG570458.1_Pimephales_notatus_is ...T...........A..AT.....CTC...TA.........AG.T.GC..C...G.G.CC.CA..A............C MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...T..C...........A......CTT...TA.........AG.T.....C..CG...CC.CA..A........C...C MT364325.1_Hybognathus_amarus_mi C..T.........T.A.TAT....GCTT...TAT........AG.TGGC..C..AG...CC.CA..A.....G..C..CC MT501368.1_Gila_cypha_isolate_SN ......G..C.....T...........C..CT..A.......AG.T.GC..C...G.G..T.C...A.......AC..TG MT501369.1_Notropis_simus_pecose ......G...........A......CTC...TA..T.........T.....C..CG....T.C.........G..C...C MT501378.1_Hybognathus_amarus_is C..T...........A.TAT....GCTT...TAT........AG.TGGC..C..AG...CC.CA..A.....G..C..CC MT501385.1_Notropis_jemezanus_vo ......G...........A..G..GCTT...TAT........A..TGGA..C...G...CC.C.........G..C...C MT501391.1_Rhinichthys_osculus_i .............T.A..TT.G..GG.T...T..........A..TGGC..C..CG...CCG....A..G..G..C..TG MT667239.1_Rhinichthys_osculus_t .............T.A..TT.G..GG.T...T..........A..TGGC..C..CG...CCG....A..G..G..C..TG MT667242.1_Luxilus_cornutus_vouc T..T...........A..A......CTT...TAT........A..TGG...C...G...CC.C......G.....C..GC MW300340.1_Hybognathus_placitus_ .........G.....A..A..G..G.TT...TATA.......A..TGGC..C..AG...CC.CG..A.....G.....CC MW300341.1_Hybognathus_placitus_ .........G.....A..A..G..G.TT...TATA.......A..T.GC..C..AG...CC.CG..A.....G..C..CC NC_013763.1_Mylocheilus_caurinus ...T.....G.....T.........GTT...T.............TGGC..C..CG....CG.T..A........C..TG NC_033926.1_Opsopoeodus_emiliae_ ...A........TT.A..A......TTT...CATA.......A..T.....C...G...CC.CA...G.......C..CT NC_037008.1_Notropis_chalybaeus_ ...T.........T.A..A......CTT...TAT........A..T..C..C..CG...CC.CA..A.....G..C...C NC_037009.1_Notropis_heterolepis ...T...........A..A......CTT...TAT.T......A..TGG...C..CG...CC.CT.....G.....C..G. NC_037010.1_Rhinichthys_obtusus_ ....T.C........G...T.G..GG.C...T..T.......A..TGGC..C..CG...CC..T..A..T..G..C..T. NC_037014.1_Notropis_hudsonius_i ...T...........G.....T...CTT..GTA.........A...GGC..C...G...CC.C......G........TG NC_037015.1_Exoglossum_maxilling ...T....................GGTT...T.............TGGC.....CG...CCG....A..G.....C..T. NC_054086.1_Ptychocheilus_lucius ......G..C.....T..........TC..CT...........G.T.GC..C...G....T.C...A.......AC..TG NC_054257.1_Gila_cypha_isolate_S ......G..C.....T...........C..CT..A.......AG.T.GC..C...G.G..T.C...A.......AC..TG NC_054259.1_Gila_nigrescens_isol ......G..C.....T..........TC..CT..........AG.T.GC..C...G...CT.....A.......AC..T. NC_054260.1_Hybognathus_amarus_i C..T...........A.TAT....GCTT...TAT........AG.TGGC..C..AG...CC.CA..A.....G..C..CC NC_054262.1_Notropis_jemezanus_v ......G...........A..T..GCTT...TAT...........TGGA..C...G...CC.C.........G..C...C Pimephales_notatus_R2S3_________ C..T...........A..AT.....TTT...TA.........AG.T.GC..C...G...CC.CA..A.....G......C Pimephales_tenellus_tenellu_R2S1 ...T...........G...T.....CTT...CA.........A..TGGC..C...G...CC.CA..A........C...C Pimephales_tenellus_parvice_R2S2 G..T...........G...T.....CTT...CA............TGGC..C...G...CC.CA..A........C...C Pimephales_notatus_R1S1_________ C..T...........A..AT.....TTT...TA.........AG.T.GC..C...G...CC.CA........G......C MG570452.1_Pimephales_promelas_i ...T...........A.........CT....TA.A.......AG.T.GC..C...G...CC.CA..A........C...C MG570452.1_Pimephales_promelas_S ...T...........A..........TG...TA.A.......AG.TGGC..C...G...CC.CA..A........C...C AB626850.1_Megalobrama_terminali TCCTAACAACAACCACTGCCCTAGTACTATTATCGCTAGGGGGCCTACCCCCACTAACAGGATTTATGCCAAAATGACTA AP010779.1_Mylocheilus_caurinus_ ..T...................T......C.C..C..T.................T..G..................T.. AP011215.1_Gila_sp._1460_mitocho ..T.....G...........T.G..GT.GC....AT.G..C...T....T..T..T.....C.....A.....G..G..T AP011263.1_Scardinius_erythropht ..T.G..C..G...............T..C.......G.....A.....T.....C..G..T...........G...... AP011267.1_Algansea_lacustris_mi .......GG....AG.C........CT.......C..T..A.....T..T..C.....C........A........GT.. AP011268.1_Yuriria_alta_mitochon .......GG....A..C............C....C..G........C........T..C..G.....A.....G...... AP011273.1_Hybognathus_nuchalis_ .A......G....AG.C...T.....T..C....C.....A.....C........C..C..C.....A.........T.. AP011274.1_Couesius_plumbeus_mit ..T....CG.......C.....C........G.....G........T..G..T..T..G..G.....A.....G..G... AP011275.1_Platygobio_gracilis_m .T..G...G....AG.C.....G...T..C.G..C..T..A.....G........T........C..A........GT.. AP011277.1_Erimystax_dissimilis_ ..T....GG.............T...T.......A..T.................C..T........A.....G...T.. AP011279.1_Pimephales_promelas_m .AT.....G....T..C...T.G..TT.......CT....A.....C........T..C........A........G... AP011280.1_Clinostomus_elongatus ..T.G.............................C..C..A........A.....T..G........A.........A.. AP012079.1_Luxilus_chrysocephalu ....C..GG....GG.C.....T...T.GC....C...........C........C..C........A........GT.. AP012080.1_Macrhybopsis_gelida_m .A..G........AG.....T.....T.......C..C..A.....C..T.....T...........A.........T.T AP012083.1_Notropis_atherinoides ..T.....G.T..AG.C........GT..C....T...........C........C..C.....C........G...T.. AP012084.1_Notropis_baileyi_mito .G......G....AG.C...T.G...A.GC.G..C.....C.....C........T..C........A.....G...T.. AP012087.1_Cyprinella_galactura_ .......GG....AG.C.....C...T..C.G..C..T......T.G........T..C..C..C..A.....G.....G AP012088.1_Hybopsis_lineapunctat .A......G....A............T..C....C.....A.....C........C..C.................GT.G AP012090.1_Luxilus_cornutus_mito ....C...G....TG.C........G...C.G..C........T..C........C..C.....C..A........GT.G AP012091.1_Lythrurus_ardens_mito ..T....GG.G..GG.C.....T...T....G..TT.......T..C........T..C..............G...T.. AP012092.1_Lythrurus_fumeus_mito ..T.....G....G..C.....T......C.C..C...........T........T..T...........T.....GT.. AP012093.1_Lythrurus_lirus_mitoc ..T.....G.G..GG.C.....T......C....TT.......T..T........T..C........A.....G...T.. AP012094.1_Lythrurus_umbratilis_ ..T....GG.G..GG.C.....T...T....G..TT.......T..C........T..C..............G...T.. AP012095.1_Macrhybopsis_meeki_mi .A...........AG...........T.......C..T..A..T..T..T.....T...........A.........T.T AP012097.1_Notropis_bifrenatus_m ........G.G..AG.C.........T.......T.....A...........G..T..C........A.....G...A.. AP012098.1_Pimephales_sp._MCZunc .AA...TGG....A..G.....C..GT..C.T..C..T..A.....C........T..C........A............ AP012100.1_Notropis_telescopus_m ........G....AG.C........CT.GC....C..G........C........T..C....................G AP012101.1_Pimephales_notatus_mi .AA....GG....A..G.....C..GT..C.T..C..T........C........T..C........A............ AP012102.1_Pimephales_vigilax_mi .A......G....A............T..C....T..C..A.....C........T..C........A.........T.. AP012103.1_Pogonichthys_macrolep ..T..........T........C.....GC.C..A..T..A..............T..G..................T.. AP012106.1_Richardsonius_balteat .......GG....G..C.........T..C.G..C..C..A..............C........C..A........GA.. AP012108.1_Notropis_chrosomus_mi .AT.....G....AG.C........GT.GC.G..CT....T.....C........T..C..G.....A.........A.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .A......G....A............T..C....T..C..A.....C........T..C........A.........T.. Pimephales_vigilax_R1S3_________ .A......G....A............T..C....T..C..A.....C........T..C........A.........T.. DQ536429.1_Notropis_stramineus_m .G..C..GG.G..AG.C........GT..C....C..C..C..T..C..A..G..C..G...........T.....G... JX910141.1_Squaliobarbus_curricu CT......G.............G...T..C.C.....C..A..T..C..A.....G........C..A........GT.. KC351187.1_Squaliobarbus_curricu CT......G.............G...T..C.C.....C..A..T..C..A.....G........C..A........GT.. KT278765.1_Pimephales_promelas_m .AT.....G....T..C...T.G..TT.......CT..........C........T..C........A.....G...... KT289925.1_Pimephales_promelas_m .AT.....G....T..C...T.G..TT.......CT....A.....C........T..C........A........G... KT424924.1_Rhinichthys_osculus_m ..T.G.........G.....T.G...........A.....T........T.....T.....................T.. KU200257.1_Chanodichthys_ilishae ...................T........G.....A.....T.....G.................C............... MF972070.1_Siphateles_bicolor_mo ..T....GG...........T.G...T.......AT....A..TT.......T..T..G........A.....G.....T MG570407.1_Notropis_chalybaeus_v .AT.....G....TG.C............C....C.....T..T..C........T..C..G..C..A.........T.. MG570408.1_Notropis_bifrenatus_v ........G.G..AG.C.........T.......T.....A...........G..T..C........A.....G...A.. MG570413.1_Notropis_heterolepis_ ........G....AG.C.........T.GC.G..C..G........C........T..C........A.........T.G MG570416.1_Rhinichthys_obtusus_v .TT........G.TG.C...T.G........G..A..T..A..G...........T..C..G.................G MG570417.1_Rhinichthys_obtusus_v .TT........G.TG.C...T.G........G..A..T..A..G...........T..C..G.................G MG570420.1_Pimephales_notatus_vo .AA....GG....A..G.....C..GT..C.T..C..T..A.....C........T..C........A............ MG570443.1_Notropis_hudsonius_is ........G....AG.C.....T...........C..T..A.....C.....C..T..C..G........G..G...... MG570444.1_Rhinichthys_atratulus ..T.G.....GG.TG.C...T................T.....A...........T..C..............G...... MG570445.1_Rhinichthys_atratulus ..T.G.....GG.TG.C...T................T.....A...........T..C..............G...... MG570447.1_Luxilus_cornutus_isol ....CG..G....TG.C........G...C.G..C........T..C........C..C.....C..A........GT.G MG570449.1_Luxilus_cornutus_isol ....CG..G....TG.C........G...C.G..C........T..C........C..C.....C..A........GT.G MG570450.1_Pimephales_notatus_is .AA....GG....A..G.....C..GT..C.T..C..T..A.....C........T..C........A............ MG570451.1_Notropis_bifrenatus_i ........G.G..AG.C.........T.......T.....A...........G..T..C........A.....G...A.. MG570453.1_Exoglossum_maxillingu ..T....GG.............T...T.......A..T.................C..T........A.....G...T.. MG570454.1_Pimephales_promelas_i .AT.....G....T..C...T.G..TT.......CT.G..A.....C.....G..T..C........A........G... MG570455.1_Notropis_atherinoides ..T.....G.T..AG.C.....G..GT.......T...........C........C..C.....C........G...T.. MG570456.1_Notropis_atherinoides ..T.....G.T..AG.C........GT..C....T...........C........C..C.....C........G...T.. MG570457.1_Pimephales_notatus_is .AA....GG....A..G.....C..GT..C.T..C..T..A.....C........T..C........A............ MG570458.1_Pimephales_notatus_is .AA....GG....A..G.....C..GT..C.T..C..T..A.....C........T..C........A............ MK421554.1_Parabramis_pekinensis ..................................A............................................. MT333789.1_Notropis_lutipinnis_v .AT.....G....AG.C.........T.GC....TT....C.....C........T..T........A.........A.. MT364325.1_Hybognathus_amarus_mi .A......G....GG.C...T....GT..C....T.....A.....C........C..C..T.....A.........T.. MT501368.1_Gila_cypha_isolate_SN ..T.G...G...........T.G...T..C.....T.G..T..TT.G..T..T..T..G..G.....A.....G..G..T MT501369.1_Notropis_simus_pecose .AT.G..TG....G........G...T..C.C..T..T........C.....T..TT....G.....A.....G..GT.G MT501378.1_Hybognathus_amarus_is .A......G....GG.C...T....GT..C....T.....A.....C........C..C..T.....A.........T.G MT501385.1_Notropis_jemezanus_vo ..T.....G.T..AG.C.....G..GT.GC....T...........C........C..C..G........T..G...T.. MT501391.1_Rhinichthys_osculus_i ..T..........T......T..........G..A.....A........T.....T.....G...........G...T.. MT667239.1_Rhinichthys_osculus_t ..T..........T......T..........G..A.....A........T.....T.....G...........G...T.. MT667242.1_Luxilus_cornutus_vouc ....CG..G....TG.C........G...C.G..C........T..C........C..C.....C..A........GT.G MW300340.1_Hybognathus_placitus_ .G..T..GG....AG.C.....G..G........C..T.....T..C.....G..T..C..C.....A.....G..GT.. MW300341.1_Hybognathus_placitus_ .G..T..GG....AG.C.....G..GT.......C..T.....T..C.....G..T..C..C...G.A.....G..GT.. NC_013763.1_Mylocheilus_caurinus ..T...................T......C.C..C..T.................T..G..................T.. NC_033926.1_Opsopoeodus_emiliae_ .AT.....G....A..C..T........C.....CT..........C........T..T..C..C..A.........A.. NC_037008.1_Notropis_chalybaeus_ .AT.....G....TG.C............C....C.....T..T..C........T..C..G..C..A.........T.. NC_037009.1_Notropis_heterolepis ........G....AG.C.........T.GC.G..C..G........C........T..C........A.........T.G NC_037010.1_Rhinichthys_obtusus_ .TT........G.TG.C...T.G........G..A..T..A..G...........T..C..G.................G NC_037014.1_Notropis_hudsonius_i ........G....AG.C.....T...........C..T..A.....C.....C..T..C..G........G..G...... NC_037015.1_Exoglossum_maxilling ..T....GG.............T...T.......A..T.................C..T........A.....G...T.. NC_054086.1_Ptychocheilus_lucius .AT.....G...........T.....T..C....AT.G..C..TT.G.....T..T.....G.....A.....G..G..T NC_054257.1_Gila_cypha_isolate_S ..T.G...G...........T.G...T..C.....T.G..T..TT.G..T..T..T..G..G.....A.....G..G..T NC_054259.1_Gila_nigrescens_isol ..T.....G.......G...T.G..GT.......AT.G..C...T....T..T..T..G..G.....A.....G..G..T NC_054260.1_Hybognathus_amarus_i .A......G....GG.C...T....GT..C....T.....A.....C........C..C..T.....A.........T.. NC_054262.1_Notropis_jemezanus_v ..T.....G.T..AG.C.....G..GT.GC....T...........C........C..C..G........T..G...T.. Pimephales_notatus_R2S3_________ .AA.....G....A..C.....C..GT..C.T..C.....A.....C.....G..T..C........A............ Pimephales_tenellus_tenellu_R2S1 .G......G....A..C..T.....C..G.....C..T..A..T..C........C..C..................... Pimephales_tenellus_parvice_R2S2 .G......G....A..C..T.....C..G.....C..T..A..T..C........C..C..G.....A...........G Pimephales_notatus_R1S1_________ .AA.....G....A..C.....C..GT..C.T..C.....A.....C.....G..T..C........A............ MG570452.1_Pimephales_promelas_i .AT.....G....T..C...T.G..TT.......CT.G..A.....C........T..C........A........G... MG570452.1_Pimephales_promelas_S .AT.....G....T..C...T.G..TT.......CT....A.....C........T..C........A........G... AB626850.1_Megalobrama_terminali ATCCTACAAGAACTAGCAAAACAAAACCTTCCAATCACTGCCACAATTATGGCCCTAGCTGCCCTACTAAGCCTCTATTT AP010779.1_Mylocheilus_caurinus_ ...........G...........G.G...C..TC.T.TC......G.C.....T..T..C.....G..T........C.. AP011215.1_Gila_sp._1460_mitocho ..TT.G.....GT..........G.G......CC.TG.C..T..G........T..C..A.....C..T...T.G..C.. AP011263.1_Scardinius_erythropht .....G.....GT............GT.....CC...........G....A...T....C.....T..TG.T..A..C.. AP011267.1_Algansea_lacustris_mi ..T..G.........A.T.....G.G...C..CC.G.....A..GG.A..A.....T..C...T..A.C.....G..C.. AP011268.1_Yuriria_alta_mitochon ..TT..........G.....G...G....C..CC.T.....A...G.A..A..T..T..C......A.T.....G..C.. AP011273.1_Hybognathus_nuchalis_ ..T..C........T.....G..GGG...C..CC.A..C..G..CC.A..A.....T.....T...A.T.....G..... AP011274.1_Couesius_plumbeus_mit G.T..G..G...T...........GG...C..CC.............C........T..G...T.G..T........C.. AP011275.1_Platygobio_gracilis_m ...T.G..................GG...C..CC.T.....A...G.A..A..T..T..C.....CA.C.....T..C.. AP011277.1_Erimystax_dissimilis_ ..T........G............G....C..CC.TGT.......G.A.....TA.T..C........T.....G..C.. AP011279.1_Pimephales_promelas_m ..TT....................GG...C..CC.T..C..A..CG.A..A..T..T..C......A.T..TT.A..... AP011280.1_Clinostomus_elongatus ..T..C..............G...G....C..CC.T.T...T...G....A..T..C..C.....G..T..T.....C.. AP012079.1_Luxilus_chrysocephalu ..T.....G..G.....G..G..GGG...C..CC.......A...G.G........T..C......A.T.....G..... AP012080.1_Macrhybopsis_gelida_m ..TT.......G........G...GG......CC.T..A..A...G.A..A..T..T..C......A.T.....A..... AP012083.1_Notropis_atherinoides ..TT....G.....G.....G...GG...C..CC.T.....A..TG.A.....T..T..C......A.T.....G..C.. AP012084.1_Notropis_baileyi_mito ..T.................G...GG...C..TC.T.....A...G.C..A..T..C..C...T..A.T.....A..C.. AP012087.1_Cyprinella_galactura_ ..TT.......G..G.....G..GGG...C..CC.T.....A..TG....A.....G.....G..CA.C.....A..C.. AP012088.1_Hybopsis_lineapunctat ..TT..........T..G......GG...C..CT.T..C..A..CG.G..A..T..T..C......A.T..T..G..C.. AP012090.1_Luxilus_cornutus_mito ..T..G..G..GT.......G...GG...C..CC.A.....A..GG.A........T..C......A.T..T.....C.. AP012091.1_Lythrurus_ardens_mito .....G.....GT.G.....G...GG...C..CC.......A..CG.A..A..T..T..C.....GA.T........C.. AP012092.1_Lythrurus_fumeus_mito ..TT....G..GT..A..GTG........C..CC.......A..CG.......T..T..C......A.T........C.. AP012093.1_Lythrurus_lirus_mitoc ..TT.G.....GT....G..G..GGG...C..CC.......A..CG.A.....T..T..C.....GA.T........C.. AP012094.1_Lythrurus_umbratilis_ .....G.....GT.G.....G..GGG...C..CC.......A..CG.A.....T..T..C.....GA.T........C.. AP012095.1_Macrhybopsis_meeki_mi ..TT.......G........G...GG...C..CC.T.....A...G.A.....T..C..C......A.T.....A..... AP012097.1_Notropis_bifrenatus_m ..TT.......G...A........GG...C..CC.T..C..A..TG....A.....T......T..A.T...T.G..C.. AP012098.1_Pimephales_sp._MCZunc ..TT.G........GA.C..G...G.......GC....C..A..C.....A..T..T..C......A.T........C.. AP012100.1_Notropis_telescopus_m ..............T........GGG...C..CC....C..A..CG.C........T.........A.T.....G..... AP012101.1_Pimephales_notatus_mi ..TT.G........GA.C..G...GG.......C....C..A..CG....A..T..T..C......A.T........C.. AP012102.1_Pimephales_vigilax_mi ..T..T..G...T..A....G...GG...C..CC....C..A..TC.A..A.....C..C......A.T..T..T..C.. AP012103.1_Pogonichthys_macrolep .....C........G.....G..GG....C..CT.TGTC........C.....T..T...........T........C.. AP012106.1_Richardsonius_balteat ..T..C..G.....G.....G...GG...C..CC.T........C..C.....T..T..C.....G..T.....A..C.. AP012108.1_Notropis_chrosomus_mi ..T.....G...........G...GG...C..CC.T.....A...G....A..T..C........GA.T..T..A..C.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..T..T..G...T..A....G...GG...C..CC....C..A..TC.A..A.....C..C......A.T..T..T..C.. Pimephales_vigilax_R1S3_________ ..T..T..G...T..A....G...GG...C..CC....C..A..TC.A..A.....C..C......A.T..T..T..C.. DQ536429.1_Notropis_stramineus_m .....G..G.....CA........GC...C..CC....C..A..C..C.....T..C..C..T..GA.T.....A..C.. JX910141.1_Squaliobarbus_curricu ...T..........G..G........T.....C.....C........C..A...T.G..C............T.A..C.. KC351187.1_Squaliobarbus_curricu ...T..........G..G........T.....C.....C........C..A...T.G..C............T.A..C.. KT278765.1_Pimephales_promelas_m ..TT................G...G....C..CC....C..A..CG.A..A..T.....C......A.T..T..G..... KT289925.1_Pimephales_promelas_m ..TT................G..GGG...C..CC.T..C..A..CG.A..A..T..T..C......A.T..TT.A..... KT424924.1_Rhinichthys_osculus_m ..T.....G........G..G....G......CC...T.......G..........T..C..A..G..T.....A..C.. KU200257.1_Chanodichthys_ilishae .....G......T.G..................GCT...........C..A.....G......T..........T..C.. MF972070.1_Siphateles_bicolor_mo ..TT.......GT.G........GG....C..CC.TG.C.....GG....A.....C........T..C...T.A..C.. MG570407.1_Notropis_chalybaeus_v ..TT................G...GG...C..CC.T.........G....A..T..C..C......A.T..T..A..C.. MG570408.1_Notropis_bifrenatus_v ..TT.......G...A........GG...C..CC.T..C..A..TG....A.....T......T..A.T...T.G..C.. MG570413.1_Notropis_heterolepis_ ..TT.............C..G..GGGT..C..CC.T.....A...G.A..A..T..T..C......A.C.....A..C.. MG570416.1_Rhinichthys_obtusus_v ..T.........T.......G..GGG...C..CC..CT.......G.G........C..C..T..G..T.....T..C.. MG570417.1_Rhinichthys_obtusus_v ..T.........T.......G..GGG...C..CC..CT.......G.G........C..C..T..G..T.....T..C.. MG570420.1_Pimephales_notatus_vo ..TT.G........GA.C..G...G.......GC....C..A..C.....A..T..T..C......A.T........C.. MG570443.1_Notropis_hudsonius_is ..TT....................GG...C..CC.T..C..G..GG.A..A.....T..A......A.T...T.G..C.. MG570444.1_Rhinichthys_atratulus ..T..G......T.......G..GGG...C..CC..CT.......G.G..A.....C..C..T..G..T........C.. MG570445.1_Rhinichthys_atratulus ..T..G......T.......G..GGG...C..CC..CT.......G.G..A.....C..C..T..G..T........C.. MG570447.1_Luxilus_cornutus_isol ..T..G..G...T.......G...GG...C..CC.A.....A..GGCA........T..C......A.T..T.....C.. MG570449.1_Luxilus_cornutus_isol ..T..G..G...T.......G...GG...C..CC.A.....A..GGCA........T..C......A.T..T.....C.. MG570450.1_Pimephales_notatus_is ..TT.G........GA.C..G...G.......GC....C..A..C.....A..T..T..C......A.T........C.. MG570451.1_Notropis_bifrenatus_i ..TT.......G...A........GG...C..CC.T..C..A..TG....A.....T......T..A.T...T.G..C.. MG570453.1_Exoglossum_maxillingu ..T........G............G....C..CC.TGT.......G.A.....TA.T..C........T.....G..C.. MG570454.1_Pimephales_promelas_i ..TT................G..GGG...C..CC.T..C..A..CG.A..A..T..T..C......A.T..TT.A..... MG570455.1_Notropis_atherinoides ..TT....G.....G.....G...GG...C..CC.T.....A..TG.A.....T..T..C......A.T.....G..C.. MG570456.1_Notropis_atherinoides ..TT....G.....G.....G...GG...C..CC.T.....AG.TG.A.....T..T..C......A.T.....G..C.. MG570457.1_Pimephales_notatus_is ..TT.G........GA.C..G...G.......GC....C..A..C.....A..T..T..C......A.T........C.. MG570458.1_Pimephales_notatus_is ..TT.G........GA.C..G...G.......GC....C..A..C.....A..T..T..C......A.T........C.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..T..G.....G........G...GG...CT.CC.......A...G..........T.........A.T..T..A..C.. MT364325.1_Hybognathus_amarus_mi .....C.....G..TA....G...GG...C..CC.TG.C..G..CC.A..A.....T.....TT..A.T.....A..... MT501368.1_Gila_cypha_isolate_SN ..TT........T.G..........G......CC.T..C......G..........C..G.....C..C.....G..C.. MT501369.1_Notropis_simus_pecose ..TT....G..G.....G..G...GG...C..TC....C..T..C........T..C........CA.T.....A..C.. MT501378.1_Hybognathus_amarus_is .....C.....G..TA....G...GG...C..CC.TG.C..G..CC.A..A.....T.....TT..A.T.....A..... MT501385.1_Notropis_jemezanus_vo ..TT.......G..G.....C..GGG...C..CC.T.....A..TG.G.....T..T..C.....GA.T.....A..C.. MT501391.1_Rhinichthys_osculus_i ..T..G..G...A......CG....G...C..CC..GT.......G..........T..C..T..G..T.....A..C.. MT667239.1_Rhinichthys_osculus_t ..T..G..G...A......CG....G...C..CC..GT.......G..........T..C..T..G..T.....G..C.. MT667242.1_Luxilus_cornutus_vouc ..T..G..G...T.......G...GG...C..CC.A.....A..GGCA........T..C......A.T..T.....C.. MW300340.1_Hybognathus_placitus_ ..T..C........TA....G...GG...C..CC.T..C..G..CC.G..A.....T..C..T..GA.T..T..G..C.. MW300341.1_Hybognathus_placitus_ ..T..C........TA....G...GG...C..CC.T..C..G..CC.A..A.....T..C..T..GA.T..T..G..C.. NC_013763.1_Mylocheilus_caurinus ...........G...........G.G...C..TC.T.TC......G.C.....T..T..C.....G..T........C.. NC_033926.1_Opsopoeodus_emiliae_ ..TT...........A........G.TA.C..CC.T..C..A..T..A..A..T..G..C......A.T...T.A..... NC_037008.1_Notropis_chalybaeus_ ..TT................G...GG...C..CC.T.........G....A..T..C..C......A.T..T..A..C.. NC_037009.1_Notropis_heterolepis ..TT.............C..G..GGGT..C..CC.T.....A...G.A..A..T..T..C......A.C.....A..C.. NC_037010.1_Rhinichthys_obtusus_ ..T.........T.......G..GGG...C..CC..CT.......G.G........C..C..T..G..T.....T..C.. NC_037014.1_Notropis_hudsonius_i ..TT....................GG...C..CC.T..C..G..GG.A..A.....T..A......A.T...T.G..C.. NC_037015.1_Exoglossum_maxilling ..T........G............G....C..CC.TGT.......G.A.....TA.T..C........T.....G..C.. NC_054086.1_Ptychocheilus_lucius ..TT........T..........GG.......CC.T..C..T...GC......T..G..A.....C..C.....G..C.. NC_054257.1_Gila_cypha_isolate_S ..TT........T.G........G.G......CC.T..C......G..........C..G.....C..C.....G..C.. NC_054259.1_Gila_nigrescens_isol ..TT........T............G......CC.T..C..T...........T..C..A........C.....G..C.. NC_054260.1_Hybognathus_amarus_i .....C.....G..TA....G...GG...C..CC.TG.C..G..CC.A..A.....T.....TT..A.T.....A..... NC_054262.1_Notropis_jemezanus_v ..TT.G.....G..G.....G..GGG...C..CC.T.....A..TG.G.....T..T..C......A.T.....A..C.. Pimephales_notatus_R2S3_________ ..T..T......T.GA....G...GG...C..GC....C..A..C..A..A..T..T..C......A.T.....G..C.. Pimephales_tenellus_tenellu_R2S1 ...............A.T.......G...CT.CC.T.....A..CG.A.....T.....C......A.T..T..G..C.. Pimephales_tenellus_parvice_R2S2 ...............A.T.......G...CT.CC.T.....A..CG.A..A..T.....C......A.T..T..G..C.. Pimephales_notatus_R1S1_________ ..T..T......T.GA....G...GG...C..GC....C..A..C..A..A..T..T..C......A.T.....G..C.. MG570452.1_Pimephales_promelas_i ..TT................G..GGG...C..CC.T..C..A..CG.A..A..T..T..C......A.T..TT.A..... MG570452.1_Pimephales_promelas_S ..TT....................GG...C..CC.T..C..A..CG.A..A..T..T..C......A.T..TT.A..... AB626850.1_Megalobrama_terminali TTATCTACGTCTCTGTTACGCAATAACACTGACAATCTCCCCCAACACTACCAACTCAATCACCCCTTGACGAACCCAAA AP010779.1_Mylocheilus_caurinus_ ....T.G..A..T.................A..C.................T.G.....CT.....G........T..G. AP011215.1_Gila_sp._1460_mitocho C..CT....A........T...........C..C..T..T..T.....CGTT.GT...GC......C......GTT.G.. AP011263.1_Scardinius_erythropht ....T....A..T........C........C..C........T........T.C.G.G.CT........G..GGT..... AP011267.1_Algansea_lacustris_mi ....T....A.....C.....G........C..C.................T.C.....C.................... AP011268.1_Yuriria_alta_mitochon C..CT.G..A.....C..............T..C........T.......TT.C......TG..........G..T.G.. AP011273.1_Hybognathus_nuchalis_ C...T....A.....C.....G.....T..C..C...........T...G.T.C.....C...T..C..G........G. AP011274.1_Couesius_plumbeus_mit .........A..T..C...........C..T..C............G...A.GCT....C......C......GTT.... AP011275.1_Platygobio_gracilis_m ....T.G..C..T..C...A.......C..T..C........T......GTT.C.....G............G....... AP011277.1_Erimystax_dissimilis_ ....T.G..C..T..C..............T..C.................TGC...T.C......C.......TT.... AP011279.1_Pimephales_promelas_m ...CT....AT.A..C...........T..A..C.....T..T..T....TT.C.....C...............T.... AP011280.1_Clinostomus_elongatus C...T....G........T........G..T..C........T......GTT.....G.C......C.....GGT...G. AP012079.1_Luxilus_chrysocephalu ...C..C..C.................G..C..CG..........T...GT..C.....CT.....C........T.... AP012080.1_Macrhybopsis_gelida_m ...CT....A..T..C...A.......T..T..T..T.....T....T...A.C.....CT.....C............G AP012083.1_Notropis_atherinoides ...CT....A.....C.....G.....T..C..C..T..T.....T....TT.C....TCT............G...... AP012084.1_Notropis_baileyi_mito ....T....A.....C...........T..T..C........T..T...G...C.....CA.....A..G.....T.... AP012087.1_Cyprinella_galactura_ ......G..C...........G.....T..T..C........A.GTG.CG.T.C.....C......G..G..G..T.G.. AP012088.1_Hybopsis_lineapunctat ...CT....A........T.....G..T..T..C.....T.........G...CT....C.........G.......... AP012090.1_Luxilus_cornutus_mito ...C.................G..G.....C..C........T..T...GT..C.....C...T..A.....G.GT.... AP012091.1_Lythrurus_ardens_mito ....T....A.....C...........T..T..C.....T..T..T...GTG.C.....C......C..G..G..T..G. AP012092.1_Lythrurus_fumeus_mito ....T.G..A.....C..T..C.....T..T..T..T.....T..T...GTA.C.....C............G..T...T AP012093.1_Lythrurus_lirus_mitoc ....T.G..C.....C.....G.....T..T..C...........T...GTG.C...G.C......C..G..G..T..G. AP012094.1_Lythrurus_umbratilis_ ....T....A.....C...........T..A..C.....T..T..T...GTG.C...G.C......C..G..G..T..G. AP012095.1_Macrhybopsis_meeki_mi ...CT....A..T..C...A.......C..T..T..T.....T..T..A..A.C.....CT.....A............G AP012097.1_Notropis_bifrenatus_m ...CT.G..A..T..C..T........T..C..T...C....T..T..C.T..C.....C.G....C..G.....T.... AP012098.1_Pimephales_sp._MCZunc ...CT....AT.G..C..............T..C........T..T...GTT.C.....C......C........T..T. AP012100.1_Notropis_telescopus_m ...CT....A.....C...........T..C..C........T......G...CT....C......C........T.... AP012101.1_Pimephales_notatus_mi ....T....AT.A..C........G.....T..C........T..T....TT.C.....C...............T..T. AP012102.1_Pimephales_vigilax_mi ...CT....A..A......A.......T..T..C.........C.T..C..T.C..T..CT.....C........T.GT. AP012103.1_Pogonichthys_macrolep ....T....A..T.................A..C..............C..T.......C...............T..G. AP012106.1_Richardsonius_balteat ....T....A..T..C........G..C..A..C........T........T.G.....C......C......GTT.... AP012108.1_Notropis_chrosomus_mi ....T....A..A..C........G..T..T..C........T..T...G.T.CT....CA...........GG.T.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...CT....A..A......A.......T..T..C.........C.T..C..T.C..T..CT.....C........T.GT. Pimephales_vigilax_R1S3_________ ...CT....A..A......A.......T..T..C.........C.T..C..T.C..T..CT.....C........T.GT. DQ536429.1_Notropis_stramineus_m ...CT.G..A..T..C.....G.....C..T..T..T.....T..T...G.T.C...C.CT.....C..G.....T.G.. JX910141.1_Squaliobarbus_curricu C..C..G..C.....C............T.A.....T........T.............CT.....C............. KC351187.1_Squaliobarbus_curricu C..C..G..C.....C............T.A.....T........T.............CT.....C............. KT278765.1_Pimephales_promelas_m ...CT.G..AT.A..C...........T.....C........T..T....T..C.....C.........G.....T.... KT289925.1_Pimephales_promelas_m ...CT.G..AT.A..C...........T.....C.....T..T..T....T..C.....C......C..G.....T.... KT424924.1_Rhinichthys_osculus_m ....T....A..T..C.....C..G.....C..C........T........T.C...T.C......C......GTT.... KU200257.1_Chanodichthys_ilishae C..C..G..C........T...........C........T.....T..A.T...............C............. MF972070.1_Siphateles_bicolor_mo C..C.....A.....C..T...........C..C..T..T..T.......TTGGT..GGC......C......GTT.... MG570407.1_Notropis_chalybaeus_v C...T.G..G..T..C...........T..T..C........T......GTT.C.....CA.....A........T.... MG570408.1_Notropis_bifrenatus_v ...CT.G..A..T..C..TA.......T..C..T........T..T..C.T..C.....C.G....C..G.....T.... MG570413.1_Notropis_heterolepis_ C..C.....A..A.....T...........C..C........T......GT..C.....C......A...........T. MG570416.1_Rhinichthys_obtusus_v C...T....A..T......A.C........T..C..........GT..A.GTGC..TTG.T...........GGTT.... MG570417.1_Rhinichthys_obtusus_v C...T....A..T......A.C........T..C..........GT..A.GTGC..TTG.T...........GGTT.... MG570420.1_Pimephales_notatus_vo ...CT....AT.G..C..............T..C........T..T...GTT.C.....C......C........T..T. MG570443.1_Notropis_hudsonius_is C..CT....AT.A........T........T..C........A.....C.TT.CT....C................T.C. MG570444.1_Rhinichthys_atratulus C.....G..A..T........C........T..C.........C.T..A.AT.C..TT..T.....C......GTT..G. MG570445.1_Rhinichthys_atratulus C.....G..G..T........C........T..C.........C.T..A.AT.C..TT..T.....C......GTT..G. MG570447.1_Luxilus_cornutus_isol ...C.................C..G.....C..C........T..T...GT..C.....C......A.....G.GT.... MG570449.1_Luxilus_cornutus_isol ...C.................C..G.....C..C........T..T...GT..C.....C......A.....G.GT.... MG570450.1_Pimephales_notatus_is ...CT....AT.G..C..............T..C........T..T...GTT.C.....C......C........T..T. MG570451.1_Notropis_bifrenatus_i ...CT.G..A..T..C..TA.......T..C..T........T..T..C.T..C.....C.G....C..G.....T.... MG570453.1_Exoglossum_maxillingu ....T.G..C..T..C..............T..C.................TGC...T.C......C.......TT.... MG570454.1_Pimephales_promelas_i ...CT.G..AT.A..C...........T.....C.....T..T..T...GT..C.....C......C..G.....T.... MG570455.1_Notropis_atherinoides ...CT.G..A.....C.....G.....T..C..C..T..T.....T....T..C....TCT............G...... MG570456.1_Notropis_atherinoides ...CT....A.....C.....G.....T..C..C..T..T.....T....TT.C....TCT............G...... MG570457.1_Pimephales_notatus_is ...CT....AT.G..C..............T..C........T..T...GTT.C.....C......C........T..T. MG570458.1_Pimephales_notatus_is ...CT....AT.G..C..............T..C........T..T...GTT.C.....C......C........T..T. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...CT....A..A..C...........T..T..C........T......GT..CT...TCA.....C........T.... MT364325.1_Hybognathus_amarus_mi C...T....A.....C...........T..C..C...............GTT.C.....CT..T.....G..G..T..G. MT501368.1_Gila_cypha_isolate_SN C..CT....G.....C..T.....G.....C..C..T..T..T......GTT..T...GC......C..G...GTT.... MT501369.1_Notropis_simus_pecose ....T.G..C.....C...........T..T..C........T......GT..CT....CA.....C..G.......... MT501378.1_Hybognathus_amarus_is C...T....A.....C...........T..C..C...............GTT.C.....CT..T.....G..G..T..G. MT501385.1_Notropis_jemezanus_vo ...CT....G.....C.....G.....T..C..C..T..T..T..T....T..C....TCT............G.T.... MT501391.1_Rhinichthys_osculus_i .........A..T..C.....C........T..C........T.......ATGC....GC......C..G...GTT..G. MT667239.1_Rhinichthys_osculus_t .........A..T..C.....C........T..C........T.......ATGC....TC......C..G...GTT..G. MT667242.1_Luxilus_cornutus_vouc ...C.................C..G.....C..C........T..T...GT..C.....C......A.....G.GT.... MW300340.1_Hybognathus_placitus_ ...CT.G..A.....C.....C..G..T..T..C........T......GTA.C.....C...T.....G.....T.... MW300341.1_Hybognathus_placitus_ ...CT.G..A.....C.....C..G..T..T..C........T......GTA.C.....C...T.....G.....T.... NC_013763.1_Mylocheilus_caurinus ....T.G..A..T.................A..C.................T.G.....CT.....G........T..G. NC_033926.1_Opsopoeodus_emiliae_ ...CT.G..A..A.....T........T..T..C................TT.C...C........A........T.... NC_037008.1_Notropis_chalybaeus_ C...T.G..G..T..C...........T..T..C........T......GTT.C.....CA.....A........T.... NC_037009.1_Notropis_heterolepis C..C.....A..A.....T...........C..C........T......GT..C.....C......A...........T. NC_037010.1_Rhinichthys_obtusus_ C...T....A..T......A.C........T..C..........GT..A.GTGC..TTG.T...........GGTT.... NC_037014.1_Notropis_hudsonius_i C..CT....AT.A........T........T..C........A.....C.TT.CT....C................T.C. NC_037015.1_Exoglossum_maxilling ....T.G..C..T..C..............T..C.................TGC...T.C......C.......TT.... NC_054086.1_Ptychocheilus_lucius C..CT....A.....C..T.....G.....T..C..T..T..A......GTT..T...GC......C......GTT.... NC_054257.1_Gila_cypha_isolate_S C..CT....G.....C..T.....G.....C..C..T..T..T......GTT..T...GC......C..G...GTT.... NC_054259.1_Gila_nigrescens_isol C..CT....A........T.....G.....C..C..T..T..T......GTT..T...GC......C.....GGTT.... NC_054260.1_Hybognathus_amarus_i C...T....A.....C...........T..C..C...............GTT.C.....CT..T.....G..G..T..G. NC_054262.1_Notropis_jemezanus_v ...CT....G.....C.....G.....T..C..C..T..T..T..T....T..C....TCT............G.T.... Pimephales_notatus_R2S3_________ ...CT.G..A..A..C..............T..CG.T.....A..T...GT..C.....C......C............. Pimephales_tenellus_tenellu_R2S1 ....T....AT.A..C...A.......C..T..C........T..T.T.CTT.CT...........C........T.... Pimephales_tenellus_parvice_R2S2 ....T....AT.A..C...A.......C..T..C........T..T.T.CT..CT..G.C......C........T.... Pimephales_notatus_R1S1_________ ...CT.G..A..A..C..............T..C..T.....A..T...GT..C.....C......C............. MG570452.1_Pimephales_promelas_i ...CT.G..AT.A..C...........T.....C.....T..T..T...GT..C.....C......C..G.....T.... MG570452.1_Pimephales_promelas_S ...CT....AT.A..C...........T..A..C.....T..T..T...GTT.C.....C......C..G.....T.... AB626850.1_Megalobrama_terminali CAACCCAGTCCTCCCTCCCACTTACCCTGTCCACTACAATTGCCCTAGGACTTTTACCAATAACCCCCGCTATTCTAATA AP010779.1_Mylocheilus_caurinus_ ........G....TT.A..C..GG..T...T...CGT...A.....G..C..CC.G..C..G.....AA.....A..GC. AP011215.1_Gila_sp._1460_mitocho ....T...G....T.....G..GG....AA.......GC.A..G..G..C...C.T..C........A..CG.CG....G AP011263.1_Scardinius_erythropht ....T..AG....TT.A..CT.AG......TT..C.....A..A..T..C...C.G..CG..T....AA.C...A.GG.G AP011267.1_Algansea_lacustris_mi .C..T..AG....TG.T..C..GG......T...CGT...A..T..G..C.....G..CG.G.....AA.C...A..... AP011268.1_Yuriria_alta_mitochon ........G....TA....C..GG..T.AG.T..CGTC..G........C..A.....C..T.....TA.C...A...CG AP011273.1_Hybognathus_nuchalis_ ....T..AG....TA....C..CG..T.AA....CGT...G..T..G..C..C.....TG.TG....TA.....A...C. AP011274.1_Couesius_plumbeus_mit .......AG....TT.G.....AG.TG.T.......TG.CA..A..G..C..CC.C..C..G..T..GA.....A..... AP011275.1_Platygobio_gracilis_m ........G.....A.T..C..GG..T...T....GT...A.....G..C........T..C.....TA.....A.G..G AP011277.1_Erimystax_dissimilis_ ..T....AC....T..T..C..AG..T...T...CGT...A.....G..C...C....CG....A..AA.....A..... AP011279.1_Pimephales_promelas_m .G.AT..AG....TG.T..C..GG..........CGT...A..T..C..C........C..T.....TA.C...A.G.C. AP011280.1_Clinostomus_elongatus ..G....AG.....T.A..C..AG..T.C.TT..CGTGTCA..G.....C..C..G..CG.G..T..G......A..... AP012079.1_Luxilus_chrysocephalu ....T...G.....A....C..AG..T....T..CGT...A.....G..C..C..G..C..T.....TA.....G....G AP012080.1_Macrhybopsis_gelida_m .......AAG...A..T..C..GG.AA....T...GT...A..TT.G..C..A..G..C..CG....A......A..... AP012083.1_Notropis_atherinoides ........G....TA.T..G..AG..T.A..T..CGT...A........C..C..G..C..C..T..AA....CA..... AP012084.1_Notropis_baileyi_mito .G.....AG....TA.T..C..AG....C..AT.AGT...G..T.....C..C.....T..C.....AA.....G...CC AP012087.1_Cyprinella_galactura_ .G.....AG....T..T..C..AG..T.A..T..GGT...G........C..AC.C..C..C.....TATC...G.T.CG AP012088.1_Hybopsis_lineapunctat ....T..AG....TA.T..C..GG..T....T..CGT...A..T.....C........C..T.......TC...A...C. AP012090.1_Luxilus_cornutus_mito .G......G....TA....C..GG..T.A..T..CGT...A.....G..T..C..G..C..C.....AA.....A.G..G AP012091.1_Lythrurus_ardens_mito .C..T...G.....GC..TC..GG.AT.A..A..AGT...G.....G..C.....G..CC.T.....AA..G..A.G.C. AP012092.1_Lythrurus_fumeus_mito ....T...A.....GC..TT..AG.TT.A.....GGT...A........C.....G..CC.T.....TA.....G...C. AP012093.1_Lythrurus_lirus_mitoc .C..T...G.....GCT.TT..GG.A..A..A..AGT...G.....G..C.....G..CC.C.....T...G..A...CG AP012094.1_Lythrurus_umbratilis_ .C..T...G.....GC..TC..GG.AT.A..A..AGT...G.....G..C.....G..CC.T.....AA.....A.G.C. AP012095.1_Macrhybopsis_meeki_mi .......AAA...A.....CT.AG.A..A..T...GT...A.....G..T.....G..T..C.....AA.....A..... AP012097.1_Notropis_bifrenatus_m .G......G....TA.T..C..GG..T.A.TT..CGTG..A..T..G..C........C..T.....AA.....A..... AP012098.1_Pimephales_sp._MCZunc ....T..AG....TA.T..C..AG....A.T...CGT...A..T.....T........C..T......A..G..G...CG AP012100.1_Notropis_telescopus_m ........G....TA....C..CG..T.A.T...CGT...G........C........CG.T.....TA.C...T...CT AP012101.1_Pimephales_notatus_mi ....T..AG....TA.T..C..AG......TT..CGT...A..T.....T........C..C......A.....G...CG AP012102.1_Pimephales_vigilax_mi ....T..AG....TA.T..C..AG..T.C.TT..CGT...A......A.T..A.....T..T.....TA.....A.GG.. AP012103.1_Pogonichthys_macrolep ....T..AA....T..A..C..GG..T.A.T...CGT.G.G.....G..C...C....CG.G..T..TA.....GC.GC. AP012106.1_Richardsonius_balteat ....T..AG.....T.G..C..GG..T...TT..CGTG.CA........C........CG.G..T..AA.C...ACC..G AP012108.1_Notropis_chrosomus_mi .G......A....TA....C..AG..T....T..CGT...A..T.....C..C..G..C..C.....AA.....A.G.C. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....T..AG....TA.T..C..AG..T.C.TT..CGT...A......A.T..A.....T..T.....TA.....A.GG.. Pimephales_vigilax_R1S3_________ ....T..AG....TA.T..C..AG..T.C.TT..CGT...A......A.T..A.....T..T.....TA.....A.GG.. DQ536429.1_Notropis_stramineus_m ........G....TA.T..C..GG..T....G..CGT...A..T.....C........C..T.....AA.....A.G.CC JX910141.1_Squaliobarbus_curricu .......A..............AG....A..T..C.....C.....T......C.............A..C..C...... KC351187.1_Squaliobarbus_curricu .......A..............AG....A..T..C.....C.....T......C.............A..C..C...... KT278765.1_Pimephales_promelas_m .G.AT...G....TA.T..C..GG....C.....CGT...A..T..C..C........C..T.....TA.C...A.G.C. KT289925.1_Pimephales_promelas_m .G.AT...G....TA.T..C..GG....A.....CGTG.CA..T..C..C........C..T......A.C...A.G.C. KT424924.1_Rhinichthys_osculus_m ....T...G..........CT.A.....AA.T..C.TC..G..TT....C........CG.G..A..AA.....A.G... KU200257.1_Chanodichthys_ilishae .......A...........C........A..T..C.....C.................T........A............ MF972070.1_Siphateles_bicolor_mo ....T..AG....TT....CT.AG....AA....C...C.A..A..G..C...C.T..C........A..C...G....G MG570407.1_Notropis_chalybaeus_v .......AGT...TA....C..GG..T.......CGT...A........C..C.....CG.T.....TA.........C. MG570408.1_Notropis_bifrenatus_v .G......G....TA.T..C..GG..T.A.TT..CGTG..A..T..G..C........C..T.....AA.....A..... MG570413.1_Notropis_heterolepis_ ....T..AG.T...A....C..CG....C..T..CGT...A........C........CG........A.....A.G... MG570416.1_Rhinichthys_obtusus_v .G..T...G....GT....T..AG....T..T..CGT...G..T..G..C........CG.GG.A..GA.....A..... MG570417.1_Rhinichthys_obtusus_v .G..T...G....GT....T..AG....T..T..CGT...G..T..G..C........CG.GG.A..GA.....A..... MG570420.1_Pimephales_notatus_vo ....T..AG....TA.T..C..AG....A.T...CGT...A..T.....T........C..T......A..G..G...CG MG570443.1_Notropis_hudsonius_is ....T...G....T.....C..AG....A..A..GGT...A..G..T..C........C..CG.T..AA.C...A..... MG570444.1_Rhinichthys_atratulus .G..T..A.T...AT....T..GG....T.....CGT.G.G..G..G..C...........GG.A..G..C...G..... MG570445.1_Rhinichthys_atratulus .G..T..A.T...AT....T..GG....T.....CGT.G.G..G..G..C...........GG.A..G..C...G..... MG570447.1_Luxilus_cornutus_isol .G......G....TA....C..GG..T....T..CGT...A.....G..C..C..G..C..C.....AA.....A.G..G MG570449.1_Luxilus_cornutus_isol .G......G....TA....C..GG..T....T..CGT...A.....G..C..C..G..C..C.....AA.....A.G..G MG570450.1_Pimephales_notatus_is ....T..AG....TA.T..C..AG....A.T...CGT...A..T.....T........C..T......A..G..G...CG MG570451.1_Notropis_bifrenatus_i .G......G....TA.T..C..GG..T.A.TT..CGTG..A..T..G..C........C..T.....AA.....A..... MG570453.1_Exoglossum_maxillingu ..T....AC....T..T..C..AG..T...T...CGT...A.....G..C...C....CG....A..AA.....A..... MG570454.1_Pimephales_promelas_i .G.AT...G....TA.T..C..GG....A.....CGT..CA..T..C..C..C.....C..T.....TA.C...A.G.C. MG570455.1_Notropis_atherinoides ........G....TA.T..G..AG..T....T..CGT...A........C..C..G..C..C..T..AA.....A.G... MG570456.1_Notropis_atherinoides .......AG....TA.T..G..AG..T.A..T..CGT...A........C..C.....C..C..T..AA....CA..... MG570457.1_Pimephales_notatus_is ....T..AG....TA.T..C..AG....A.T...CGT...A..T.....T........C..T......A..G..G...CG MG570458.1_Pimephales_notatus_is ....T..AG....TA.T..C..A.....A.T...CGT...A..T.....T........C..T......A..G..G...CG MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .G.....AG....TA.T..C..GG..T....T..CGT...A..T.....C..C..G..C..T.....AA.....A...C. MT364325.1_Hybognathus_amarus_mi ....T..AG....TA....C..C...T.CA....CGT...G..T..G..C..C.....CG.T..T..TA.A...A..GC. MT501368.1_Gila_cypha_isolate_SN ....T..AG....T.....C..AG....AG.T.....GC.A..A..G..C...C.T..C.....T..A..C...G....G MT501369.1_Notropis_simus_pecose .G......G.......T..C..GG..T...T...CGT.GCG..T..G..C..C..G..T..G.....A...G..G...CG MT501378.1_Hybognathus_amarus_is ....T..AG....TA....C..CG..T.CA....CGT...G..T..G..C..C.....CG.T..T..TA.A...A..GC. MT501385.1_Notropis_jemezanus_vo ..G.....G....AA.....G.GG..T....T..CGT...A........C..C..G..C..C.....AA..G..A..... MT501391.1_Rhinichthys_osculus_i ..G.T...A.....T....C..GG....AG.T..CGT...G..TT.G..C........CG....A..AA.....A....G MT667239.1_Rhinichthys_osculus_t ..G.T...A.....T....C..GG....AG.T..CGT...G..TT.G..C........CG.G..A..AA.....A....G MT667242.1_Luxilus_cornutus_vouc .G......G....TA....C..GG..T....T..CGT...A.....G..C..C..G..C..C.....AA.....A.G..G MW300340.1_Hybognathus_placitus_ ....T..AG....TG.T..C..GG.GT...TT..CGT.T.A..T..G..C..C.....CG.C..T..G......A...C. MW300341.1_Hybognathus_placitus_ ....T..AG....TG.T..C..GG.GT...TT..CGT.T.A..T..G..C..C.....CG.C..T..GA.....A.G.C. NC_013763.1_Mylocheilus_caurinus ........G....TT.A..C..GG..T...T...CGT...A.....G..C..CC.G..C..G.....AA.....A..GC. NC_033926.1_Opsopoeodus_emiliae_ .G..G..AG.....GC...CT.AG..T.C.T...C...T.A..T..T..T..C..G..C..CT.T..T..C...A..... NC_037008.1_Notropis_chalybaeus_ .......AGT...TA....C..GG..T.......CGT...A........C..C.....CG.T.....TA.........C. NC_037009.1_Notropis_heterolepis ....T..AG.T...A....C..CG....C..T..CGT...A........C........CG........A.....A.G... NC_037010.1_Rhinichthys_obtusus_ .G..T...G....GT....T..AG....T..T..CGT...G..T..G..C........CG.GG.A..GA.....A..... NC_037014.1_Notropis_hudsonius_i ....T...G....T.....C..AG....A..A..GGT...A..G..T..C........C..CG.T..AA.C...A..... NC_037015.1_Exoglossum_maxilling ..T....AC....T..T..C..AG..T...T...CGT...A.....G..C...C....CG....A..AA.....A..... NC_054086.1_Ptychocheilus_lucius ...AT..AG...T......C..GG....AA.T......C.AA.A..G..C...C.T..C.....T..A......A....G NC_054257.1_Gila_cypha_isolate_S ....T..AG....T.....C..AG....AG.T.....GC.A..A..G..C...C.T..C.....T..A..C...G....G NC_054259.1_Gila_nigrescens_isol ....T...G....T.....G..GG....AA.T..C...C.A..A.....C...C.T..C..G..T..A..C...G....G NC_054260.1_Hybognathus_amarus_i ....T..AG....TA....C..CG..T.CA....CGT...G..T..G..C..C.....CG.T..T..TA.A...A..GC. NC_054262.1_Notropis_jemezanus_v ..G....AG....AA.T...G.AG..T....T..CGT...G........C..C..G..C..C.....AA..G..A..... Pimephales_notatus_R2S3_________ .G..T...G.T..TA.T.....GG....C.TT..CGT...A........T........C..C......A.A...A...CG Pimephales_tenellus_tenellu_R2S1 ...AT..AGT...TA.T..C..AG..T.......CGT...A..T..GA.C........C..T.....TA.....A.GGCG Pimephales_tenellus_parvice_R2S2 ...AT..AGT...TA.T..C..AG..T.......CGT...A..T...A.C........CG.T.....T......A.GGC. Pimephales_notatus_R1S1_________ .G..T...G.T..TA.T.....GG....C.TT..CGT...A........T........C..C......A.A...A...CG MG570452.1_Pimephales_promelas_i .G.AT...G....TA....C..GG....A.....CGT..CA..T..C..C..C.....C..T.....TA.C...A.G.C. MG570452.1_Pimephales_promelas_S .G.AT..AG....TG.T..C..GG..........CGT...A..T..C..C........C..T.....TA.C...A.G.C. AB626850.1_Megalobrama_terminali CTAGCCACCTAGGGACTTAGGATAACATC-AGACCAAGAGCCTTCAAAGCTCTAAGTAGAAGTGAAAATCTTCTAGTCCC AP010779.1_Mylocheilus_caurinus_ ....T...................G...A-.....G.C..................C........G.............. AP011215.1_Gila_sp._1460_mitocho ....T.........G.............T-..........................C...................C... AP011263.1_Scardinius_erythropht ....TT..................G...T-........G...........C.....C....................... AP011267.1_Algansea_lacustris_mi ..T.TT.TT.....G..............-..........................C...................C... AP011268.1_Yuriria_alta_mitochon ..CATAGTT.....G.........G...T-.A...GG..................AC...................C... AP011273.1_Hybognathus_nuchalis_ ..T.TT..T.....G.........G...T-.....GG...................C...................C... AP011274.1_Couesius_plumbeus_mit T...T.......................T-.........A................C....................... AP011275.1_Platygobio_gracilis_m ..G.T.........G.........G...T-.....GG...................C...................C... AP011277.1_Erimystax_dissimilis_ ....T...................G...A-......C...................C....................... AP011279.1_Pimephales_promelas_m ..C.TT.TT.....G.........G..CT-.....GG...................C...................C..T AP011280.1_Clinostomus_elongatus ....T........A..............TA..........................C....................... AP012079.1_Luxilus_chrysocephalu ..C.T...T.....G.........G....-.....GG...................C...................C... AP012080.1_Macrhybopsis_gelida_m ....TT.TT.....G.........G....-..........................C...................C... AP012083.1_Notropis_atherinoides ..C.T.GTT.....G.........G....-.....G....................C...................C... AP012084.1_Notropis_baileyi_mito ..T.TT.TT.....G.........G...T-..........................C...................C... AP012087.1_Cyprinella_galactura_ ....TT.T......G.........G....-..........................C........G..........C... AP012088.1_Hybopsis_lineapunctat ..C.TT.TT.....G.........G...T-..........................C...................C... AP012090.1_Luxilus_cornutus_mito ..C.T..TT.....G.........G....-..........................C...................C... AP012091.1_Lythrurus_ardens_mito ..TATTGTT.....G.........GT.CT-..........................C........G..........C... AP012092.1_Lythrurus_fumeus_mito ..C.TT.TT.....GT........GT..T-..........................C..................AC... AP012093.1_Lythrurus_lirus_mitoc ..C.TTGTT.....G.........GT.CA-.....G....................C...................C... AP012094.1_Lythrurus_umbratilis_ ..T.TTGTT.....G.........GT.CT-..........................C........G..........C... AP012095.1_Macrhybopsis_meeki_mi ....TT..T...............G...T-......G...................C...................C... AP012097.1_Notropis_bifrenatus_m ..C.TT........G.........G...T-.....GG...................C...................C... AP012098.1_Pimephales_sp._MCZunc ..C.TT.TT.....G.........G..C.-.....GG...................C...................C... AP012100.1_Notropis_telescopus_m ..C.TT.TT.....G.........G...T-.....GG...................C...................C... AP012101.1_Pimephales_notatus_mi ..C.TT.TT.....G.........G..C.-.....GG...................C...................C... AP012102.1_Pimephales_vigilax_mi T...TT.........T........G..C.-.....GG...................C..................A.... AP012103.1_Pogonichthys_macrolep ..G.TT.T................G...A-.....G.C..................C....................... AP012106.1_Richardsonius_balteat ..G.T...G...............G...A-..........................C....................... AP012108.1_Notropis_chrosomus_mi ..T.TT.TT.....G.........G....-..........................C...................C... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T...TT.........T........G..C.-.....GG...................C..................A.... Pimephales_vigilax_R1S3_________ T...TT.........T........G..C.-.....GG...................C..................A.... DQ536429.1_Notropis_stramineus_m ..T.TT.TT...A.G.........G.G.T-.....GG...................C......T............C.T. JX910141.1_Squaliobarbus_curricu ...A........................T-..........................C....................... KC351187.1_Squaliobarbus_curricu ...A........................T-..........................C....................... KT278765.1_Pimephales_promelas_m ..C.TT.TT..A..G.........G..C.-.....GG...................C...................C..T KT289925.1_Pimephales_promelas_m ..C.TT.TT.....G.........G..CT-.....GG...................C...................C..T KT424924.1_Rhinichthys_osculus_m ....T...................G....-..........................C........G.............. KU200257.1_Chanodichthys_ilishae .............................-..........................C....................... MF972070.1_Siphateles_bicolor_mo ....T.........G.........G...T-...................T......C...................C... MG570407.1_Notropis_chalybaeus_v ..TATT.TT.....G.........GT..T-.....G....................C...................C... MG570408.1_Notropis_bifrenatus_v ..C.TT........G.........G...T-.....GG...................C...................C... MG570413.1_Notropis_heterolepis_ ..C.TT..T.....G.........G...T-..........................C...................C... MG570416.1_Rhinichthys_obtusus_v ....T...................G...T-.....G....................C........G.............. MG570417.1_Rhinichthys_obtusus_v ....T...................G...T-.....G....................C........G.............. MG570420.1_Pimephales_notatus_vo ..C.TT.TT.....G.........G..C.-.....GG...................C...................C... MG570443.1_Notropis_hudsonius_is ..C.T...T.....G.........G....-..........................C..G........C.......C... MG570444.1_Rhinichthys_atratulus ....T.......A...........G...T-.....G.................G..C....................... MG570445.1_Rhinichthys_atratulus ....T...................G...T-.....G.................G..C....................... MG570447.1_Luxilus_cornutus_isol ..C.T..TT.....G.........G....-..........................C...................C... MG570449.1_Luxilus_cornutus_isol ..C.T..TT.....G.........G....-..........................C...................C... MG570450.1_Pimephales_notatus_is ..C.TT.TT.....G.........G..C.-.....GG...................C...................C... MG570451.1_Notropis_bifrenatus_i ..C.TT........G.........G...T-.....GG...................C...................C... MG570453.1_Exoglossum_maxillingu ....T...................G...A-......C...................C....................... MG570454.1_Pimephales_promelas_i ..C.TT.TT.....G.........G..CT-.....GG...................C...................C..T MG570455.1_Notropis_atherinoides ..C.T.GTT.....G.........G....-.....G....................C...................C... MG570456.1_Notropis_atherinoides ..C.T.GTT.....G.........G....-.....G....................C...................C... MG570457.1_Pimephales_notatus_is ..C.TT.TT.....G.........G..C.-.....GG...................C...................C... MG570458.1_Pimephales_notatus_is ..C.TT.TT.....G.........G..C.-.....GG...................C...................C... MK421554.1_Parabramis_pekinensis .............................-.................................................. MT333789.1_Notropis_lutipinnis_v ..T.TT..T.....G.........G....-..........................C...................C... MT364325.1_Hybognathus_amarus_mi ..T.TT.TT.....G.........G...T-.....G....................C...................C... MT501368.1_Gila_cypha_isolate_SN ....T.........G.............T-..........................C...................C... MT501369.1_Notropis_simus_pecose ..C.TT..T.....G.........G....-..........................C...................C... MT501378.1_Hybognathus_amarus_is ..T.TT.TT.....G.........G...T-.....G....................C...................C... MT501385.1_Notropis_jemezanus_vo ..C.TT.T....A.G.........G....-.....GG...............C...C...................C... MT501391.1_Rhinichthys_osculus_i ....T...................G....-..........................C....................... MT667239.1_Rhinichthys_osculus_t ....T.......A...........G....-..........................C....................... MT667242.1_Luxilus_cornutus_vouc ..C.T..TT.....G.........G....-..........................C...................C... MW300340.1_Hybognathus_placitus_ ..T.TT.T......G.........G...T-.....GG...................C...................C... MW300341.1_Hybognathus_placitus_ ..T.TT.T......G.........G...T-.....GG...................C...................C... NC_013763.1_Mylocheilus_caurinus ....T...................G...A-.....G.C..................C........G.............. NC_033926.1_Opsopoeodus_emiliae_ ..TATG........G......T.....CT-.....G........................................C..T NC_037008.1_Notropis_chalybaeus_ ..TATT.TT.....G.........GT..T-.....G....................C...................C... NC_037009.1_Notropis_heterolepis ..C.TT..T.....G.........G...T-..........................C...................C... NC_037010.1_Rhinichthys_obtusus_ ....T...................G...T-.....G....................C........G.............. NC_037014.1_Notropis_hudsonius_i ..C.T...T.....G.........G....-..........................C..G........C.......C... NC_037015.1_Exoglossum_maxilling ....T...................G...A-......C...................C....................... NC_054086.1_Ptychocheilus_lucius ....T.......A.G.........G...T-..........................C...................C.T. NC_054257.1_Gila_cypha_isolate_S ....T.........G.............T-..........................C...................C... NC_054259.1_Gila_nigrescens_isol ....T.........G.........G...T-..........................C...................C... NC_054260.1_Hybognathus_amarus_i ..T.TT.TT.....G.........G...T-.....G....................C...................C... NC_054262.1_Notropis_jemezanus_v ..C.TT.T....A.G.........G....-.....GG...................C...................C... Pimephales_notatus_R2S3_________ ..C.TT.TT.....G.........G..C.-.....GG...................C...................C..T Pimephales_tenellus_tenellu_R2S1 ..C.TA.TT.....G.........GT.CG-..........................C...................C... Pimephales_tenellus_parvice_R2S2 ..C.TA.TT.....G.........GT..A-..........................C...................C... Pimephales_notatus_R1S1_________ ..C.TT.TT.....G.........G..C.-.....GG...................C...................C..T MG570452.1_Pimephales_promelas_i ..C.TT.TT.....G.........G..CT-.....GG...................C...................C..T MG570452.1_Pimephales_promelas_S ..C.TT.TT.....G.........G..CT-.....GG...................C...................C..T AB626850.1_Megalobrama_terminali TGA-TAAGACCTACAAGAGTCTATCTTGCATTTTCTGATTGCAAATCAAATGTTTTTATTAAACTAAGGCCTTACTAGAT AP010779.1_Mylocheilus_caurinus_ ..GT................................A..............................A............ AP011215.1_Gila_sp._1460_mitocho ...-................................A....................G...............T...... AP011263.1_Scardinius_erythropht ...-................................A....................................T...... AP011267.1_Algansea_lacustris_mi ...-................T..........C......A..................G...............T...... AP011268.1_Yuriria_alta_mitochon ...-................T..........C.........................G...............T...... AP011273.1_Hybognathus_nuchalis_ ...-................T..........C......A..................G...............T...... AP011274.1_Couesius_plumbeus_mit ...-................................A....................G...............T...... AP011275.1_Platygobio_gracilis_m ...-................T..........C....A.............C......G...............T...... AP011277.1_Erimystax_dissimilis_ ...-................T...............A....................................T...... AP011279.1_Pimephales_promelas_m ...-................T..........C......A..................G...............T...... AP011280.1_Clinostomus_elongatus ...-................................A.............C......................T...... AP012079.1_Luxilus_chrysocephalu ...-..............C............C......A..................G...............T...... AP012080.1_Macrhybopsis_gelida_m ...-................T..........C....A....................................T...... AP012083.1_Notropis_atherinoides ...-................T..........C......G..............C...G...................... AP012084.1_Notropis_baileyi_mito ...-...........................C......G..................................T...... AP012087.1_Cyprinella_galactura_ ...-................T....C.....C......G..............C...G...G...........T...... AP012088.1_Hybopsis_lineapunctat ...-...........................C......G..................................T...... AP012090.1_Luxilus_cornutus_mito ...-..............C............CG.....A..................................T...... AP012091.1_Lythrurus_ardens_mito ...-................T..........C......G.........G....C...G...............T...... AP012092.1_Lythrurus_fumeus_mito ...-................T..........C......A.........G....C...................T...... AP012093.1_Lythrurus_lirus_mitoc ...-................T..........C......A.........G....C...G...............T...... AP012094.1_Lythrurus_umbratilis_ ...-................T..........C......A.........G....C...G...............T...... AP012095.1_Macrhybopsis_meeki_mi ...-................T..........C....A....................................T...... AP012097.1_Notropis_bifrenatus_m ...-................T..........C......G..............C...G...............T...... AP012098.1_Pimephales_sp._MCZunc ...-................T..........C......A..................G...............T...... AP012100.1_Notropis_telescopus_m ...-................T..........C......A..................G...............T...... AP012101.1_Pimephales_notatus_mi ...-................T..........C......A..................G...............T...... AP012102.1_Pimephales_vigilax_mi ...-................T..........C......A..................G...............T...... AP012103.1_Pogonichthys_macrolep ..GC................T...............A........................................... AP012106.1_Richardsonius_balteat ...-....G................................................G...............T...... AP012108.1_Notropis_chrosomus_mi ...-................T..........C......A.................A................T...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...-................T..........C......A..................G...............T...... Pimephales_vigilax_R1S3_________ ...-................T..........C......A..................G...............T...... DQ536429.1_Notropis_stramineus_m ...-................T..........C......A..................G...............T...... JX910141.1_Squaliobarbus_curricu ...-................................A........................................... KC351187.1_Squaliobarbus_curricu ...-................................A........................................... KT278765.1_Pimephales_promelas_m ...-................T..........C......A..................G...............T...... KT289925.1_Pimephales_promelas_m ...-................T..........C......A..................G...............T...... KT424924.1_Rhinichthys_osculus_m ...-..................................G..................G...............T...... KU200257.1_Chanodichthys_ilishae ...-............................................................................ MF972070.1_Siphateles_bicolor_mo ...-..............C.................A...........G........G...............T...... MG570407.1_Notropis_chalybaeus_v ...-................T..........C......A..................G...............T...... MG570408.1_Notropis_bifrenatus_v ...-................T..........C......G..............C...G...............T...... MG570413.1_Notropis_heterolepis_ ...-................T..........C......A..................G...............T...... MG570416.1_Rhinichthys_obtusus_v ...-...........G....................A...........G........................T...... MG570417.1_Rhinichthys_obtusus_v ...-...........G....................A...........G........................T...... MG570420.1_Pimephales_notatus_vo ...-................T..........C......A..................G...............T...... MG570443.1_Notropis_hudsonius_is ...-................T..........C.........................G...............T...... MG570444.1_Rhinichthys_atratulus ...-...........G....................A...........G........................T...... MG570445.1_Rhinichthys_atratulus ...-...........G....................A...........G........................T...... MG570447.1_Luxilus_cornutus_isol ...-..............C............CG.....A..................................T...... MG570449.1_Luxilus_cornutus_isol ...-..............C............CG.....A..................................T...... MG570450.1_Pimephales_notatus_is ...-................T..........C......A..................G...............T...... MG570451.1_Notropis_bifrenatus_i ...-................T....C.....C......G..............C...G...............T...... MG570453.1_Exoglossum_maxillingu ...-................T...............A....................................T...... MG570454.1_Pimephales_promelas_i ...-................T..........C......A..................G...............T...... MG570455.1_Notropis_atherinoides ...-................T..........C......G..............C...G...............T...... MG570456.1_Notropis_atherinoides ...-................T..........C......G..............C...G...................... MG570457.1_Pimephales_notatus_is ...-................T..........C......A..................G...............T...... MG570458.1_Pimephales_notatus_is ...-................T..........C......A..................G...............T...... MK421554.1_Parabramis_pekinensis ...-............................................................................ MT333789.1_Notropis_lutipinnis_v ...-................T..........C......A..................................T...... MT364325.1_Hybognathus_amarus_mi ...-................T..........C......A..................G...............T...... MT501368.1_Gila_cypha_isolate_SN ...-................................A....................G...............T...... MT501369.1_Notropis_simus_pecose ...-................T..........C......A..................G...............T...... MT501378.1_Hybognathus_amarus_is ...-................T..........C......A..................G...............T...... MT501385.1_Notropis_jemezanus_vo ...-................T..........C......G..............C...G...................... MT501391.1_Rhinichthys_osculus_i ...-........................................G............G..............CT...... MT667239.1_Rhinichthys_osculus_t ...-........................................G............G..............CT...... MT667242.1_Luxilus_cornutus_vouc ...-..............C............CG.....A..................................T...... MW300340.1_Hybognathus_placitus_ ...-................T.G........C......A..................G...............T...... MW300341.1_Hybognathus_placitus_ ...-....G...........T..........C......A..................G...............T...... NC_013763.1_Mylocheilus_caurinus ..GT................................A..............................A............ NC_033926.1_Opsopoeodus_emiliae_ ...-................T..........C......A..................................T...... NC_037008.1_Notropis_chalybaeus_ ...-................T..........C......A..................G...............T...... NC_037009.1_Notropis_heterolepis ...-................T..........C......A..................G...............T...... NC_037010.1_Rhinichthys_obtusus_ ...-...........G....................A...........G........................T...... NC_037014.1_Notropis_hudsonius_i ...-................T..........C.........................G...............T...... NC_037015.1_Exoglossum_maxilling ...-................T...............A....................................T...... NC_054086.1_Ptychocheilus_lucius ...-................................A....................................T...... NC_054257.1_Gila_cypha_isolate_S ...-................................A....................G...............T...... NC_054259.1_Gila_nigrescens_isol ...-................................A....................G...............T...... NC_054260.1_Hybognathus_amarus_i ...-................T..........C......A..................G...............T...... NC_054262.1_Notropis_jemezanus_v ...-................T..........C......G..............C...G...................... Pimephales_notatus_R2S3_________ ...-................T..........C......A..................G...............T...... Pimephales_tenellus_tenellu_R2S1 ...-................T..........C......A..................G...............T...... Pimephales_tenellus_parvice_R2S2 ...-................T..........C......A..................G...............T...... Pimephales_notatus_R1S1_________ ...-................T..........C......A..................G...............T...... MG570452.1_Pimephales_promelas_i ...-................T..........C......A..................G...............T...... MG570452.1_Pimephales_promelas_S ...-................T..........C......A..................G...............T...... AB626850.1_Megalobrama_terminali GGGAAGGCCTCGATCCTACAAACTCTTAGTTAACAGCTAAGCGCTCAAACCAGCGAGCATCCATCTACTTTTCCCGCCTC AP010779.1_Mylocheilus_caurinus_ ..............................................................................AT AP011215.1_Gila_sp._1460_mitocho ................................................G.............................GT AP011263.1_Scardinius_erythropht ................................................G.............................GT AP011267.1_Algansea_lacustris_mi ................................................G...................-.........GT AP011268.1_Yuriria_alta_mitochon ................................................G...................-.........GT AP011273.1_Hybognathus_nuchalis_ ................................................G...................-.........GT AP011274.1_Couesius_plumbeus_mit ................................................G.............................GT AP011275.1_Platygobio_gracilis_m ................................................G...................-.........AT AP011277.1_Erimystax_dissimilis_ ........................T...............A.......G.............................GT AP011279.1_Pimephales_promelas_m ................................................G...................-.........GT AP011280.1_Clinostomus_elongatus ................................................G.............................AT AP012079.1_Luxilus_chrysocephalu ................................................G...................-.........GT AP012080.1_Macrhybopsis_gelida_m ....................................................................-.........AT AP012083.1_Notropis_atherinoides ................................................G...................-.........GT AP012084.1_Notropis_baileyi_mito ................................................G...................-.........GT AP012087.1_Cyprinella_galactura_ ................................................G...................-.........GT AP012088.1_Hybopsis_lineapunctat ................................................G...................-.........AT AP012090.1_Luxilus_cornutus_mito ................................................G...................-.........GT AP012091.1_Lythrurus_ardens_mito ................................................G...................-.........GT AP012092.1_Lythrurus_fumeus_mito ................................................G...................-.........GT AP012093.1_Lythrurus_lirus_mitoc ................................................G...................-.........GT AP012094.1_Lythrurus_umbratilis_ ................................................G...................-.........GT AP012095.1_Macrhybopsis_meeki_mi ................................................G...................-.........AT AP012097.1_Notropis_bifrenatus_m ................................................G...................-.........GT AP012098.1_Pimephales_sp._MCZunc ................................................G...................-.........AT AP012100.1_Notropis_telescopus_m ................................................G...................-.........GT AP012101.1_Pimephales_notatus_mi ................................................G...................-.........GT AP012102.1_Pimephales_vigilax_mi ................................................G..............C....-.........GT AP012103.1_Pogonichthys_macrolep ..............................................................................AT AP012106.1_Richardsonius_balteat ................................................G.............................AT AP012108.1_Notropis_chrosomus_mi ................................................G...................-.........AT AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ................................................G..............C....-.........GT Pimephales_vigilax_R1S3_________ ................................................G..............C....-.........GT DQ536429.1_Notropis_stramineus_m ................................................G...................-.........GT JX910141.1_Squaliobarbus_curricu ................................................G..............................A KC351187.1_Squaliobarbus_curricu ................................................G..............................A KT278765.1_Pimephales_promelas_m ................................................G...................-.........GT KT289925.1_Pimephales_promelas_m ........................................A.......G...................-.........GT KT424924.1_Rhinichthys_osculus_m ................................................G.............................GT KU200257.1_Chanodichthys_ilishae ...............................................................................A MF972070.1_Siphateles_bicolor_mo ................................................G.............................AT MG570407.1_Notropis_chalybaeus_v ................................................G..............C....-.........GT MG570408.1_Notropis_bifrenatus_v ................................................G...................-.........GT MG570413.1_Notropis_heterolepis_ ................................................G...................-.........GT MG570416.1_Rhinichthys_obtusus_v ......................T.........................G.............................AT MG570417.1_Rhinichthys_obtusus_v ......................T.........................G.............................AT MG570420.1_Pimephales_notatus_vo ................................................G...................-.........AT MG570443.1_Notropis_hudsonius_is .........................................T......G...................-.........GT MG570444.1_Rhinichthys_atratulus ......................T.........................G.............................CT MG570445.1_Rhinichthys_atratulus ......................T.........................G.............................CT MG570447.1_Luxilus_cornutus_isol ................................................G...................-.........GT MG570449.1_Luxilus_cornutus_isol ................................................G...................-.........GT MG570450.1_Pimephales_notatus_is ................................................G...................-.........AT MG570451.1_Notropis_bifrenatus_i ................................................G...................-.........GT MG570453.1_Exoglossum_maxillingu ........................T...............A.......G.............................GT MG570454.1_Pimephales_promelas_i ........................................A.......G...................-.........GT MG570455.1_Notropis_atherinoides ................................................G...................-.........GT MG570456.1_Notropis_atherinoides ................................................G...................-.........GT MG570457.1_Pimephales_notatus_is ................................................G...................-.........AT MG570458.1_Pimephales_notatus_is ................................................G...................-.........AT MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ................................................G...................-.........GT MT364325.1_Hybognathus_amarus_mi ........................................A.......G...................-.........GT MT501368.1_Gila_cypha_isolate_SN ................................................G.............................G. MT501369.1_Notropis_simus_pecose ................................................G...................-.........AT MT501378.1_Hybognathus_amarus_is ........................................A.......G...................-.........GT MT501385.1_Notropis_jemezanus_vo ................................................G...................-.........GT MT501391.1_Rhinichthys_osculus_i ................................................G.............................GT MT667239.1_Rhinichthys_osculus_t ................................................G.............................GT MT667242.1_Luxilus_cornutus_vouc ................................................G...................-.........GT MW300340.1_Hybognathus_placitus_ ................................................G...................-.........GT MW300341.1_Hybognathus_placitus_ ................................................G...................-.........GT NC_013763.1_Mylocheilus_caurinus ..............................................................................AT NC_033926.1_Opsopoeodus_emiliae_ ................................................G...................-.........GT NC_037008.1_Notropis_chalybaeus_ ................................................G..............C....-.........GT NC_037009.1_Notropis_heterolepis ................................................G...................-.........GT NC_037010.1_Rhinichthys_obtusus_ ......................T.........................G.............................AT NC_037014.1_Notropis_hudsonius_i .........................................T......G...................-.........GT NC_037015.1_Exoglossum_maxilling ........................T...............A.......G.............................GT NC_054086.1_Ptychocheilus_lucius ................................................G.............................G. NC_054257.1_Gila_cypha_isolate_S ................................................G.............................G. NC_054259.1_Gila_nigrescens_isol ......................T.........................G.............G...............GT NC_054260.1_Hybognathus_amarus_i ........................................A.......G...................-.........GT NC_054262.1_Notropis_jemezanus_v ................................................G...................-.........GT Pimephales_notatus_R2S3_________ ................................................G..............C....-.........GT Pimephales_tenellus_tenellu_R2S1 ................................................G...................-.........GT Pimephales_tenellus_parvice_R2S2 ................................................G...................-.........GT Pimephales_notatus_R1S1_________ ................................................G..............C....-.........GT MG570452.1_Pimephales_promelas_i ........................................A.......G...................-.........GT MG570452.1_Pimephales_promelas_S ................................................G...................-.........GT AB626850.1_Megalobrama_terminali T-AGCCTGGTAAGGCGGGAAAAGCCCCGGCAGACTACTAATCTACGTCTCTGGATTTGCAATCCAGCATGCT-TCTTCAC AP010779.1_Mylocheilus_caurinus_ --G....A......................C.GG..T..CC..G.....................A.G..T.-C...... AP011215.1_Gila_sp._1460_mitocho .CC....A........................GG..T..T...G...T.................A.G..AC-G...... AP011263.1_Scardinius_erythropht .-....GA.A......................GG..T..C...G.....................ATG..T.--..C... AP011267.1_Algansea_lacustris_mi .-TA..GA..........-.............G...T..C...G.....................A.G..G.C...C... AP011268.1_Yuriria_alta_mitochon .-T...G...........-.............G...T..C...G..C..................A.G..G.TA..C... AP011273.1_Hybognathus_nuchalis_ .-T...G...........-.............G..CT..C...G.....................A.G..G.TA..C... AP011274.1_Couesius_plumbeus_mit .-C....A........................GG..T..C...G.....................A.G....-G...... AP011275.1_Platygobio_gracilis_m .-G....A..........-.............GG..T..C...G.....................A.G..T.C...C... AP011277.1_Erimystax_dissimilis_ .-G....A........................GG..T..C...G........A............A.G..T.-A..C... AP011279.1_Pimephales_promelas_m .-TAG.GA..........-...........C.GG..T..G...G...T.................A.G..A.-A...... AP011280.1_Clinostomus_elongatus --G....A........................GG..T..C...G.....................A.G..T.-C...... AP012079.1_Luxilus_chrysocephalu .-T...G...........-.............GG..T..T...G.....................A.G..G.CA..C... AP012080.1_Macrhybopsis_gelida_m .-G...AA..........-.............CG..T..C...G.....................A.G..TGTA..C... AP012083.1_Notropis_atherinoides .-T...G...........-.............GG..T..G...G.....................A.G..G.-A..C... AP012084.1_Notropis_baileyi_mito C-TA..G...........-.............GG..T..G...G.....................A.G..G.-A..C... AP012087.1_Cyprinella_galactura_ .-TA.....A........-.............GT..TC.G...G.A...................A.G..GC-A..C... AP012088.1_Hybopsis_lineapunctat .-T...G...........-.............GG..T..C...G......C.............GA.G..GGCA..C... AP012090.1_Luxilus_cornutus_mito .-T...GA..........-.............GG..T..T...G.....................ATG..G.-A..C... AP012091.1_Lythrurus_ardens_mito .-T....A..........-.............GG..T..C...G.....................A.G..G.CA..C... AP012092.1_Lythrurus_fumeus_mito .-T...G...........-.............G..GT..C...G.....................A.G..G.TA..C... AP012093.1_Lythrurus_lirus_mitoc .-T...G...........-.............G...T..C...G.....................A.G..G.CA..C... AP012094.1_Lythrurus_umbratilis_ .-T....A..........-.............GG..T..C...G.....................A.G..G.CA..C... AP012095.1_Macrhybopsis_meeki_mi G-.....A..........-.............CG..T..C...G.....................A.G..TGTA..A... AP012097.1_Notropis_bifrenatus_m .-T...G...........-.............GG..TC.G...G.A...................A.G..G.-A..C... AP012098.1_Pimephales_sp._MCZunc .-....A...........-.............G..CT..C...G..A...A................G..G.AG..C... AP012100.1_Notropis_telescopus_m .-T...G...........-.............GG..T......G.....................A.G..G.CG..C... AP012101.1_Pimephales_notatus_mi .-....A...........-.............G..CT..C...G......A................G..G.TG..C... AP012102.1_Pimephales_vigilax_mi .-..T.GA..........-.............GG..T..T...G.T......A.........T..A.G..G.-A..C... AP012103.1_Pogonichthys_macrolep --G....A........................GG..T..C...G.....................A.G..T.-C...... AP012106.1_Richardsonius_balteat --G....A........................GG..T..C...G.....................A.G....-A...... AP012108.1_Notropis_chrosomus_mi .-T...G...........-.............GG..T..G...G.....................A.G..G.-A...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .-..T.GA..........-.............GG..T..T...G.T......A.........T..A.G..G.-A..C... Pimephales_vigilax_R1S3_________ .-..T.GA..........-.............GG..T..T...G.T......A.........T..A.G..G.-A..C... DQ536429.1_Notropis_stramineus_m .-T...G...........-.............GG..T......G.....................A....GC-A..C... JX910141.1_Squaliobarbus_curricu A-.....A............................T............................A....T.-....... KC351187.1_Squaliobarbus_curricu A-.....A............................T............................A....T.-....... KT278765.1_Pimephales_promelas_m .-TAG.GA..........-...........C.GG..T......G...T.................A.G..A.-A...... KT289925.1_Pimephales_promelas_m .-TAG.GA..........-...........C.GG.CT..G...G...T.................A.G..A.-....... KT424924.1_Rhinichthys_osculus_m C--....A.A......................GG..T..C...G.....................A.G..T.-...C... KU200257.1_Chanodichthys_ilishae .-G....A.........................................................A....T.-....... MF972070.1_Siphateles_bicolor_mo C-.....A........................GG..T..C...G...T.................A.G..AC-A...... MG570407.1_Notropis_chalybaeus_v C-T...GA..........-.............GG..T......G.....................A.G..G.-A..C... MG570408.1_Notropis_bifrenatus_v .-T...G...........-.............GG..TC.G...G.A...................A.G..G.-A..C... MG570413.1_Notropis_heterolepis_ .-T...GA..........-.............GG..T..C...G.....................A.G..G.CA..C... MG570416.1_Rhinichthys_obtusus_v --G....A........................G..GT..C...G....................G..G..T.-A..C... MG570417.1_Rhinichthys_obtusus_v --G....A........................G..GT..C...G....................G..G..T.-A..C... MG570420.1_Pimephales_notatus_vo .-....A...........-.............G..CT..C...G..A...A................G..G.AG..C... MG570443.1_Notropis_hudsonius_is .-T....A..........-.............GG..T..T...G.....................A.G..G.--..C... MG570444.1_Rhinichthys_atratulus --G....A........................GG..T..C...G.......................G..T.-A..C... MG570445.1_Rhinichthys_atratulus --G....A........................GG..T..C...G.......................G..T.-A..C... MG570447.1_Luxilus_cornutus_isol .-T...GA..........-.............GG..T..T...G.....................ATG..G.-A..C... MG570449.1_Luxilus_cornutus_isol .-T...GA..........-.............GG..T..T...G.....................ATG..G.-A..C... MG570450.1_Pimephales_notatus_is .-....A...........-.............G..CT..C...G..A...A................G..G.AG..C... MG570451.1_Notropis_bifrenatus_i .-T...G...........-.............GG..TC.G...G.A...................A.G..G.-A..C... MG570453.1_Exoglossum_maxillingu .-G....A........................GG..T..C...G........A............A.G..T.-A..C... MG570454.1_Pimephales_promelas_i .-TAG.GA..........-...........C.GG.CT..G...G...T.................A.G..A.-....... MG570455.1_Notropis_atherinoides .-T...G...........-.............GG..T..G...G.....................A.G..G.-A..C... MG570456.1_Notropis_atherinoides .-T...G...........-.............GG..T..G...G.....................A.G..G.-A..C... MG570457.1_Pimephales_notatus_is .-....A...........-.............G..CT..C...G..A...A................G..G.AG..C... MG570458.1_Pimephales_notatus_is .-....A...........-.............G..CT..C...G..A...A................G..G.AG..C... MK421554.1_Parabramis_pekinensis .-G.....................................................................-....... MT333789.1_Notropis_lutipinnis_v .-T...G...........-.............GG..T..G...G.....................A.G..G.-A..C... MT364325.1_Hybognathus_amarus_mi .-T...G...........-.............G..CT..C...G.....................A.G..G.TA..C... MT501368.1_Gila_cypha_isolate_SN --G....A..G.....................GG..T..T...G...T.................A.G..A.-A...... MT501369.1_Notropis_simus_pecose .-T...G...........-.............GG..T......G.....................A....G.C...C... MT501378.1_Hybognathus_amarus_is .-T...G...........-.............G..CT..C...G.....................A.G..G.TA..C... MT501385.1_Notropis_jemezanus_vo .-T...G...........-.............GG..T..G...G.....................A.G..G.-A..C... MT501391.1_Rhinichthys_osculus_i .-C....A........................CG..T..C...G.....................A.G..T.-...C... MT667239.1_Rhinichthys_osculus_t .-C....A........................CG..T..C...G.....................A.G..T.-...C... MT667242.1_Luxilus_cornutus_vouc .-T...GA..........-.............GG..T..T...G.....................ATG..G.-A..C... MW300340.1_Hybognathus_placitus_ .-....G...........-.............G...T..G...G..C..................A.G..G.TA..C... MW300341.1_Hybognathus_placitus_ .-....G...........-.............G...T..G...G..C..................A.G..G.TA..C... NC_013763.1_Mylocheilus_caurinus --G....A......................C.GG..T..CC..G.....................A.G..T.-C...... NC_033926.1_Opsopoeodus_emiliae_ C-C...GA.C........-.............GG.....TA..G.A...................A.G..ACT.T..... NC_037008.1_Notropis_chalybaeus_ C-T...GA..........-.............GG..T......G.....................A.G..G.-A..C... NC_037009.1_Notropis_heterolepis .-T...GA..........-.............GG..T..C...G.....................A.G..G.CA..C... NC_037010.1_Rhinichthys_obtusus_ --G....A........................G..GT..C...G....................G..G..T.-A..C... NC_037014.1_Notropis_hudsonius_i .-T....A..........-.............GG..T..T...G.....................A.G..G.--..C... NC_037015.1_Exoglossum_maxilling .-G....A........................GG..T..C...G........A............A.G..T.-A..C... NC_054086.1_Ptychocheilus_lucius --G....A........................GG..T..T...G.....................A.G..A.-G...... NC_054257.1_Gila_cypha_isolate_S --G....A..G.....................GG..T..T...G...T.................A.G..A.-A...... NC_054259.1_Gila_nigrescens_isol .CC....A........................GG..T..T...G...T.................A.G..AC-A...... NC_054260.1_Hybognathus_amarus_i .-T...G...........-.............G..CT..C...G.....................A.G..G.TA..C... NC_054262.1_Notropis_jemezanus_v .-T...G...........-.............GG..T..G...G.....................A.G..G.-A..C... Pimephales_notatus_R2S3_________ .-....GA..........-.............G..CT..C...G.....................A.G..GC-A..C... Pimephales_tenellus_tenellu_R2S1 .-T...G...........-.............GGCCTC.G...G.....................A.G..G.-A..C... Pimephales_tenellus_parvice_R2S2 .-T...G...........-.............GGCCT..G...G.........G.......C...A.G..G.-A..C... Pimephales_notatus_R1S1_________ .-....GA..........-.............G..CT..C...G.....................A.G..GC-A..C... MG570452.1_Pimephales_promelas_i .-TAG.GA..........-...........C.GG.CT..G...G...T.................A.G..A.-....... MG570452.1_Pimephales_promelas_S .-TAG.GA..........-...........C.GG..T..G...G...T.................A.G..A.-A...... AB626850.1_Megalobrama_terminali CAC-GGAGCTGGTGATAAGGAGAGGACTTAAACCTCTGTCTTCGGGGCTACAACCCGCCGCCTAAGCACTCGGCTACCCT AP010779.1_Mylocheilus_caurinus_ ...-..G...A-.....G........T.............................A.......G............... AP011215.1_Gila_sp._1460_mitocho ...-.AG...T-.....G......................................A......G.A.G............ AP011263.1_Scardinius_erythropht ...-..G...A-.....G......................................A........A.G............ AP011267.1_Algansea_lacustris_mi ...-..G...--.....G.A....................................A.......C..G............ AP011268.1_Yuriria_alta_mitochon ...-..G...--..G..G.A......................T.............A......-GA.............. AP011273.1_Hybognathus_nuchalis_ ...-..G...--.....G.A....................................A......GG............... AP011274.1_Couesius_plumbeus_mit ...-..G....-.....G...........G..........................A......C.A.G............ AP011275.1_Platygobio_gracilis_m ...-..G...--.....G.A....................................A......GG...........T... AP011277.1_Erimystax_dissimilis_ ...-..G....-..G..G.A.........G..........................A.......G...........T... AP011279.1_Pimephales_promelas_m T..-..G...--.....G.A....................................A......GG............... AP011280.1_Clinostomus_elongatus ...-..GA..T-.....G.A.........G..........................A.......G............... AP012079.1_Luxilus_chrysocephalu ...-..G...--.....G.A....................................A.......G............... AP012080.1_Macrhybopsis_gelida_m ...-.AG...--.....G.A...................T................A........A.G............ AP012083.1_Notropis_atherinoides ...-..G...--.....G.A....................................A......GG............... AP012084.1_Notropis_baileyi_mito T..-..G...--.....G.A....................................A......GGA.............. AP012087.1_Cyprinella_galactura_ ...-..G...--.....G.A................C..........................G................ AP012088.1_Hybopsis_lineapunctat ...-AAG...--.....G.A....................................A......-G............... AP012090.1_Luxilus_cornutus_mito ...-..G...--.....G.A....................................A......GG............... AP012091.1_Lythrurus_ardens_mito ...-..G...--.....G.A....................................A......GG............... AP012092.1_Lythrurus_fumeus_mito ...-.AG...--.....G.A....................................A......TG............... AP012093.1_Lythrurus_lirus_mitoc ...-..G...--.....G.A....................................A......GG............... AP012094.1_Lythrurus_umbratilis_ ...-..G...--.....G.A....................................A......GG............... AP012095.1_Macrhybopsis_meeki_mi ...-..G...--.....G.A....................................A......G.A.............. AP012097.1_Notropis_bifrenatus_m ...-..G...--.....G......................................A.......C............... AP012098.1_Pimephales_sp._MCZunc ...-..G...--.....G.A....................................A......-G............... AP012100.1_Notropis_telescopus_m ...-..G...--.....G.A....................................A......GG............... AP012101.1_Pimephales_notatus_mi ...-..G...--.....G.A....................................A......-G............... AP012102.1_Pimephales_vigilax_mi ...-..GA..--.....G.A........C.C.........................A......-G.TT........T... AP012103.1_Pogonichthys_macrolep ...-......A-.....G........T.............................A......GG............... AP012106.1_Richardsonius_balteat T..-..G...T-.....G........T..G.G........................A.......G............... AP012108.1_Notropis_chrosomus_mi ...-..G...---....G.A....................................A......GG............... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...-..GA..--.....G.A........C.C.........................A......-G.TT........T... Pimephales_vigilax_R1S3_________ ...-..GA..--.....G.A........C.C.........................A......-G.TT........T... DQ536429.1_Notropis_stramineus_m ...-..G...--.....G.A....................................A......GG............... JX910141.1_Squaliobarbus_curricu ...-..G...T-.....................................................A.G............ KC351187.1_Squaliobarbus_curricu ...-......T-.....................................................A.G............ KT278765.1_Pimephales_promelas_m T..-..G...--.....G.A....................................A......GG............... KT289925.1_Pimephales_promelas_m T..G..G...--.....G.A....................................A......GG............... KT424924.1_Rhinichthys_osculus_m ...-..G...--.....G.A......T.............................A.......G............... KU200257.1_Chanodichthys_ilishae ...-..G....A.................................................................... MF972070.1_Siphateles_bicolor_mo ...-.AG...T-.....G......................................A......GG..G............ MG570407.1_Notropis_chalybaeus_v ...-..G...--.....G.A....................................A......G................ MG570408.1_Notropis_bifrenatus_v ...-..G...--.....G......................................A.......C............... MG570413.1_Notropis_heterolepis_ ...-..G...--.....G.A....................................A......G................ MG570416.1_Rhinichthys_obtusus_v ...-..G...T-.....G.A......T..G..........................A.......G............... MG570417.1_Rhinichthys_obtusus_v ...-..G...T-.....G.A......T..G..........................A.......G............... MG570420.1_Pimephales_notatus_vo ...-..G...--.....G.A....................................A......-G............... MG570443.1_Notropis_hudsonius_is T..-..G...--.....G.A......T.............................A........A.G........T... MG570444.1_Rhinichthys_atratulus ...-..G..---.....G.A......T..G..........................A.......G............... MG570445.1_Rhinichthys_atratulus ...-..G...---....G.A......T..G..........................A.......G............... MG570447.1_Luxilus_cornutus_isol ...-..G...--.....G.A....................................A......GG............... MG570449.1_Luxilus_cornutus_isol ...-..G...--.....G.A....................................A......GG............... MG570450.1_Pimephales_notatus_is ...-..G...--.....G.A....................................A......-G............... MG570451.1_Notropis_bifrenatus_i ...-..G...--.....G......................................A.......C............... MG570453.1_Exoglossum_maxillingu ...-..G....-..G..G.A.........G..........................A.......G...........T... MG570454.1_Pimephales_promelas_i T..-..G...--.....G.A....................................A......GG............... MG570455.1_Notropis_atherinoides ...-..G...--.....G.A....................................A......GG............... MG570456.1_Notropis_atherinoides ...-..G...--.....G.A....................................A......GG............... MG570457.1_Pimephales_notatus_is ...-..G...--.....G.A....................................A......-GA.............. MG570458.1_Pimephales_notatus_is ...-..G...--.....G.A....................................A......-G............... MK421554.1_Parabramis_pekinensis ...-............................................................................ MT333789.1_Notropis_lutipinnis_v ...-..G...--.....G.A.A.............TC...................A......-G..T............ MT364325.1_Hybognathus_amarus_mi ...-..G...--.....G.A....................................A......GG............... MT501368.1_Gila_cypha_isolate_SN ...-.AG...T-.....G......................................A......G.A.G............ MT501369.1_Notropis_simus_pecose ...-..G...--.....G.A....................................A......GC............... MT501378.1_Hybognathus_amarus_is ...-..G...--.....G.A....................................A......GG............... MT501385.1_Notropis_jemezanus_vo ...-..G...--.....G.A....................................A......GGA.............. MT501391.1_Rhinichthys_osculus_i ...-..GA..--.....G.A......T.............................A......-G............... MT667239.1_Rhinichthys_osculus_t ...-..GA..--.....G.A......T.............................A......GG............... MT667242.1_Luxilus_cornutus_vouc ...-..G...--.....G.A....................................A......GG............... MW300340.1_Hybognathus_placitus_ ...-..G...--.....G.A....................................A......G................ MW300341.1_Hybognathus_placitus_ ...-..G...--.....G.A....................................A......G................ NC_013763.1_Mylocheilus_caurinus ...-..G...A-.....G........T.............................A.......G............... NC_033926.1_Opsopoeodus_emiliae_ ...-..G...--.....G.A.........TC......C..................A.T.....TAT............. NC_037008.1_Notropis_chalybaeus_ ...-..G...--.....G.A....................................A......G................ NC_037009.1_Notropis_heterolepis ...-..G...--.....G.A....................................A......G................ NC_037010.1_Rhinichthys_obtusus_ ...-..G...T-.....G.A......T..G..........................A.......G............... NC_037014.1_Notropis_hudsonius_i T..-..G...--.....G.A......T.............................A........A.G........T... NC_037015.1_Exoglossum_maxilling ...-..G....-..G..G.A.........G..........................A.......G...........T... NC_054086.1_Ptychocheilus_lucius ...-.AG...T-.....G.A....................................A......G.A.G............ NC_054257.1_Gila_cypha_isolate_S ...-.AG...T-.....G......................................A......G.A.G............ NC_054259.1_Gila_nigrescens_isol ...-.AG...T-............................................A......G.A.G............ NC_054260.1_Hybognathus_amarus_i ...-..G...--.....G.A....................................A......GG............... NC_054262.1_Notropis_jemezanus_v ...-..G...--.....G.A....................................A......GGA.............. Pimephales_notatus_R2S3_________ ...-..G...--.....G.A...........................................G..-............. Pimephales_tenellus_tenellu_R2S1 ...-..G...--.....G.A....................................A..........G............ Pimephales_tenellus_parvice_R2S2 ...-A.G...--.....G.A....................................A....................... Pimephales_notatus_R1S1_________ ...-..G...--.....G.A...........................................G..-............. MG570452.1_Pimephales_promelas_i T..-..G...--.....G.A....................................A......GG............... MG570452.1_Pimephales_promelas_S T..-..G...--.....G.A....................................A......GG............... AB626850.1_Megalobrama_terminali ACCTGTGGCAATTACACGCTGATTCTTTTCTACAAACCACAAAGACATTGGTACCCTTTATCTTGTATTTGGTGCCTGAG AP010779.1_Mylocheilus_caurinus_ ...............G.........................................C...................... AP011215.1_Gila_sp._1460_mitocho ....................................T....................C...........C.......... AP011263.1_Scardinius_erythropht ...............G..............................................................G. AP011267.1_Algansea_lacustris_mi ...................................................C.....A.....A................ AP011268.1_Yuriria_alta_mitochon ...................................................C.........T.A................ AP011273.1_Hybognathus_nuchalis_ ...........................C.....C...........................T.A................ AP011274.1_Couesius_plumbeus_mit ................................................................................ AP011275.1_Platygobio_gracilis_m ...................................................C...........A................ AP011277.1_Erimystax_dissimilis_ ................................................................................ AP011279.1_Pimephales_promelas_m ....................................T...........C..............A................ AP011280.1_Clinostomus_elongatus ...............G................................................................ AP012079.1_Luxilus_chrysocephalu ...............................................................A................ AP012080.1_Macrhybopsis_gelida_m ...............................................................A................ AP012083.1_Notropis_atherinoides ...............................................................A................ AP012084.1_Notropis_baileyi_mito .................................C.......................C...T.A................ AP012087.1_Cyprinella_galactura_ .........................................................A...T.A................ AP012088.1_Hybopsis_lineapunctat ...................................................C...........A................ AP012090.1_Luxilus_cornutus_mito .............................................................T.A................ AP012091.1_Lythrurus_ardens_mito .............................................................T.A................ AP012092.1_Lythrurus_fumeus_mito .............................................T.....C...........A................ AP012093.1_Lythrurus_lirus_mitoc ...............................................................A................ AP012094.1_Lythrurus_umbratilis_ ...............................................................A................ AP012095.1_Macrhybopsis_meeki_mi ...............................................................A................ AP012097.1_Notropis_bifrenatus_m .............................................................T.A..............G. AP012098.1_Pimephales_sp._MCZunc .............................................................T.A................ AP012100.1_Notropis_telescopus_m .............................................................T.A.....C.......... AP012101.1_Pimephales_notatus_mi .............................................................T.A................ AP012102.1_Pimephales_vigilax_mi ................................................................................ AP012103.1_Pogonichthys_macrolep ...............G................................................................ AP012106.1_Richardsonius_balteat ...............G................................................................ AP012108.1_Notropis_chrosomus_mi .............................................................T.A................ AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ................................................................................ Pimephales_vigilax_R1S3_________ ................................................................................ DQ536429.1_Notropis_stramineus_m .............................................................T.A..............G. JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m ....................................T..........................A................ KT289925.1_Pimephales_promelas_m ....................................T..........................A................ KT424924.1_Rhinichthys_osculus_m ................................................................................ KU200257.1_Chanodichthys_ilishae ...............G................................................................ MF972070.1_Siphateles_bicolor_mo .........................................................C...................... MG570407.1_Notropis_chalybaeus_v ...............................................................A................ MG570408.1_Notropis_bifrenatus_v .............................................................T.A..............G. MG570413.1_Notropis_heterolepis_ ...............................................................A................ MG570416.1_Rhinichthys_obtusus_v ...........................C.................................................... MG570417.1_Rhinichthys_obtusus_v ...........................C.................................................... MG570420.1_Pimephales_notatus_vo .............................................................T.A................ MG570443.1_Notropis_hudsonius_is ...................................................C.........T.A................ MG570444.1_Rhinichthys_atratulus ..................T............................................................. MG570445.1_Rhinichthys_atratulus ..................T............................................................. MG570447.1_Luxilus_cornutus_isol .............................................................T.A................ MG570449.1_Luxilus_cornutus_isol .............................................................T.A................ MG570450.1_Pimephales_notatus_is .............................................................T.A................ MG570451.1_Notropis_bifrenatus_i .............................................................T.A..............G. MG570453.1_Exoglossum_maxillingu ................................................................................ MG570454.1_Pimephales_promelas_i ....................................T..........................A................ MG570455.1_Notropis_atherinoides ...............................................................A................ MG570456.1_Notropis_atherinoides ...............................................................A........C....... MG570457.1_Pimephales_notatus_is .............................................................T.A................ MG570458.1_Pimephales_notatus_is .............................................................T.A................ MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...........................C.................................T.A..............G. MT364325.1_Hybognathus_amarus_mi ...........................C.................................T.A................ MT501368.1_Gila_cypha_isolate_SN .........................................................C...........C.......... MT501369.1_Notropis_simus_pecose .............................................................T.A..............G. MT501378.1_Hybognathus_amarus_is ...........................C.................................T.A................ MT501385.1_Notropis_jemezanus_vo .............................................................T.A................ MT501391.1_Rhinichthys_osculus_i ...............G................................................................ MT667239.1_Rhinichthys_osculus_t ...............G...................................C............................ MT667242.1_Luxilus_cornutus_vouc .............................................................T.A................ MW300340.1_Hybognathus_placitus_ ...........................C.....G...........................T.A................ MW300341.1_Hybognathus_placitus_ ...........................C.....G...........................T.A................ NC_013763.1_Mylocheilus_caurinus ...............G.........................................C...................... NC_033926.1_Opsopoeodus_emiliae_ .......A...................C........T..T.................A..CT.A................ NC_037008.1_Notropis_chalybaeus_ ...............................................................A................ NC_037009.1_Notropis_heterolepis ...............................................................A................ NC_037010.1_Rhinichthys_obtusus_ ...........................C.................................................... NC_037014.1_Notropis_hudsonius_i ...................................................C.........T.A................ NC_037015.1_Exoglossum_maxilling ................................................................................ NC_054086.1_Ptychocheilus_lucius ....................................T....................C...........C.......... NC_054257.1_Gila_cypha_isolate_S .........................................................C...........C.......... NC_054259.1_Gila_nigrescens_isol ....................................T....................C...........C.......... NC_054260.1_Hybognathus_amarus_i ...........................C.................................T.A................ NC_054262.1_Notropis_jemezanus_v .............................................................T.A................ Pimephales_notatus_R2S3_________ .............................................................T.A................ Pimephales_tenellus_tenellu_R2S1 .........................................................C.....A................ Pimephales_tenellus_parvice_R2S2 .........................................................C.....A................ Pimephales_notatus_R1S1_________ .............................................................T.A................ MG570452.1_Pimephales_promelas_i ....................................T..........................A................ MG570452.1_Pimephales_promelas_S ....................................T...........C..............A................ AB626850.1_Megalobrama_terminali CCGGAATAGTGGGAACCGCTCTAAGCCTTCTCATTCGAGCCGAACTAAGCCAACCTGGATCACTTCTGGGCGACGATCAA AP010779.1_Mylocheilus_caurinus_ ....................T.......C..T.....G.................C..G.....CT.A..T..T...... AP011215.1_Gila_sp._1460_mitocho .A.....G............T.......C..A.....G..T...T..........C........C..A..T..T..C... AP011263.1_Scardinius_erythropht .............G..T..CT.......C..T.....G.................C..G......T.A.....T...... AP011267.1_Algansea_lacustris_mi .............G......T.......C..T...........G..............G.....C..A..T.....C... AP011268.1_Yuriria_alta_mitochon ....G...............T.......C..T........T.....G..T..G..C..C.....C...........C... AP011273.1_Hybognathus_nuchalis_ .............G..T...T....T.....T........T........T........C.....C.....T..T..C... AP011274.1_Couesius_plumbeus_mit ..........A..G..T..C...........T.....G......T..........C..G...T.AT.A..T..T..C... AP011275.1_Platygobio_gracilis_m ....G...............T.......C..T...................................A..T..T..C... AP011277.1_Erimystax_dissimilis_ ....G..G............T.......C..T.....G..T...T..........C........CT.A..T..T..C... AP011279.1_Pimephales_promelas_m .............G......T.......C..A........T...T....T........C........A..T..T..C..G AP011280.1_Clinostomus_elongatus .............G......T.......C..T.....G....................G......T.A.....T..C... AP012079.1_Luxilus_chrysocephalu ....G..G............T..........T........T........T........C.....C..A..T..T...... AP012080.1_Macrhybopsis_gelida_m ....T........G..T...T..........T................................C..A..T..T..C... AP012083.1_Notropis_atherinoides ....................T.......C..T........T........T........C...........T..T..C... AP012084.1_Notropis_baileyi_mito ....................T.......C..T........T........T........T........A..T......... AP012087.1_Cyprinella_galactura_ ....................T.......C..T........T...T.......G..............A..T..T..C..G AP012088.1_Hybopsis_lineapunctat ................T...T.......C..T............T....T.....C..C........A..A..T..C... AP012090.1_Luxilus_cornutus_mito ....G...............T.......C...........T........T........C.....C..A..T..T..C... AP012091.1_Lythrurus_ardens_mito ............................C..T........T...T....T........C.....C..A..T..T...... AP012092.1_Lythrurus_fumeus_mito ..........A.........T..........T........T.....T..T........C.....C..A..T..T.....G AP012093.1_Lythrurus_lirus_mitoc ....................T.......C..T........T........T........C.....C..A..T..T...... AP012094.1_Lythrurus_umbratilis_ ............................C..T........T...T....T........C.....C..A..T..T...... AP012095.1_Macrhybopsis_meeki_mi ....C.....A..G..T...T..........T.................T.................A..T..T...... AP012097.1_Notropis_bifrenatus_m ................T...........C..T........T........T........C.....C..A..T..T..C... AP012098.1_Pimephales_sp._MCZunc ..........C.........T.......C..A.................T.....A..C........A..T.....C... AP012100.1_Notropis_telescopus_m ....................T.......C..T........T...T....T........C.....C..A.....T...... AP012101.1_Pimephales_notatus_mi ..........C.........T.......C..A.................T.....A..C........A..T..T..C... AP012102.1_Pimephales_vigilax_mi .T........A..G......T.......C..A.....C..T..G.....T.....C..C........A..T..T..C... AP012103.1_Pogonichthys_macrolep .............G......T.......C..T.....G...........T.....C..G......T.A..T..T...... AP012106.1_Richardsonius_balteat ....G...............T.......C..T..C..G....................G......T.A..T..T...... AP012108.1_Notropis_chrosomus_mi ....................T.......C..T........T........T........C........A..T..T...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .T........A..G......T.......C..A.....C..T..G.....T.....C..C........A..T..T..C... Pimephales_vigilax_R1S3_________ .T........A..G......T.......C..A.....C..T..G.....T.....C..C........A..T..T..C... DQ536429.1_Notropis_stramineus_m .............G......T.......C..T.....G..T........T........C..G..C..A..T..T..C... JX910141.1_Squaliobarbus_curricu ......................T..............G.................C.................T...... KC351187.1_Squaliobarbus_curricu ......................T..............G.................C.................T...... KT278765.1_Pimephales_promelas_m .............G......T.......C..A.................T.....G..C........A..T.....C... KT289925.1_Pimephales_promelas_m .............G......T.......C..A........T........T........C........A..T..T..C..G KT424924.1_Rhinichthys_osculus_m ....G...............T.......C..T.......................C..G.....CT.A..T..T..C..G KU200257.1_Chanodichthys_ilishae ...................................................G............................ MF972070.1_Siphateles_bicolor_mo .A.....G............T.......C..T.....G......T..........C........C..A..T..T..C... MG570407.1_Notropis_chalybaeus_v ....................T.......C..T........T.................T......T.A..T..T...... MG570408.1_Notropis_bifrenatus_v ................T...........C..T........T........T........C.....C..A..T..T..C... MG570413.1_Notropis_heterolepis_ ................G...T.......C..T........T........T........C.....C.....T..T..C... MG570416.1_Rhinichthys_obtusus_v ....G...............T.G.....C..T...........G..T.................CT.A.....T..C..G MG570417.1_Rhinichthys_obtusus_v ....G...............T.G.....C..T...........G..T.................CT.A.....T..C..G MG570420.1_Pimephales_notatus_vo ..........C.........T.......C..A.................T.....A..C........A..T.....C... MG570443.1_Notropis_hudsonius_is ....G...............T.......C..T........T........T..............C.....T..T..C... MG570444.1_Rhinichthys_atratulus ....G...............T.G.....C..T.....C.....G..T.................CT.A..A..T..C..G MG570445.1_Rhinichthys_atratulus ....G...............T.G.....C..T.....C.....G..T.................CT.A..A..T..C..G MG570447.1_Luxilus_cornutus_isol ....G...............T.......C...........T........T........C.....C..A..T..T..C... MG570449.1_Luxilus_cornutus_isol ....G...............T.......C...........T........T........C.....C..A..T..T..C... MG570450.1_Pimephales_notatus_is ..........C.........T.......C..A.................T.....A..C........A..T.....C... MG570451.1_Notropis_bifrenatus_i ................T...........C..T........T........T........C.....C..A..T..T..C... MG570453.1_Exoglossum_maxillingu ....G..G............T.......C..T.....G..T...T..........C........CT.A..T..T..C... MG570454.1_Pimephales_promelas_i .............G......T.......C..A........T........T........C........A..T..T..C..G MG570455.1_Notropis_atherinoides ....................T.......C..T........T........T........C...........T..T..C... MG570456.1_Notropis_atherinoides ....................T.......C..T........T........T........C...........T..T..C... MG570457.1_Pimephales_notatus_is ..........C.........T.......C..A.................T.....A..C........A..T.....C... MG570458.1_Pimephales_notatus_is ..........C.........T.......C..A.................T.....A..C........A..T.....C... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..........C.........T.......C..T.....C..T..G.....T.....G..C........A..T......... MT364325.1_Hybognathus_amarus_mi .............G..T...T....T.....T........T...T....T........C.....C..A..T..T...... MT501368.1_Gila_cypha_isolate_SN .A.....G............T.......C..A.....G......T..........C........C..A..T..T..C... MT501369.1_Notropis_simus_pecose ...................CT.......C........G..T........T........C........A..T......... MT501378.1_Hybognathus_amarus_is .............G..T...T....T.....T........T...T....T........C.....C..A..T..T...... MT501385.1_Notropis_jemezanus_vo .............G......T.......C..T........T........T........C...........T.....C... MT501391.1_Rhinichthys_osculus_i ....G...............T.......C..T.....G.....G.....T.....C..G.....CT.A..T..T.....G MT667239.1_Rhinichthys_osculus_t ....G...............T.......C..T.....G.....G.....T.....C..G.....CT.A..T..T.....G MT667242.1_Luxilus_cornutus_vouc ....G...............T.......C...........T........T........C.....C..A..T..T..C... MW300340.1_Hybognathus_placitus_ ................T...T.G..T..C..T........T........T........C.....C..A..T..T...... MW300341.1_Hybognathus_placitus_ ................T...T....T..C..T........T........T........C.....C..A..T..T...... NC_013763.1_Mylocheilus_caurinus ....................T.......C..T.....G.................C..G.....CT.A..T..T...... NC_033926.1_Opsopoeodus_emiliae_ .T...........G......T.......C..A.....G....................C.....C.....T..T..C... NC_037008.1_Notropis_chalybaeus_ ....................T.......C..T........T.................T......T.A..T..T...... NC_037009.1_Notropis_heterolepis ................G...T.......C..T........T........T........C.....C.....T..T..C... NC_037010.1_Rhinichthys_obtusus_ ....G...............T.G.....C..T...........G..T.................CT.A.....T..C..G NC_037014.1_Notropis_hudsonius_i ....G...............T.......C..T........T........T..............C.....T..T..C... NC_037015.1_Exoglossum_maxilling ....G..G............T.......C..T.....G..T...T..........C........CT.A..T..T..C... NC_054086.1_Ptychocheilus_lucius .A.....G............T.......C..A..C..G......T..........C........C..A..T..T..C... NC_054257.1_Gila_cypha_isolate_S .A.....G............T.......C..A.....G......T..........C........C..A..T..T..C... NC_054259.1_Gila_nigrescens_isol .A.....G...........C........C..A.....G......T..........C..G.....C..A..T..T..C... NC_054260.1_Hybognathus_amarus_i .............G..T...T....T.....T........T...T....T........C.....C..A..T..T...... NC_054262.1_Notropis_jemezanus_v .............G......T.......C..T........T........T........C...........T.....C... Pimephales_notatus_R2S3_________ .T..G.....C.........T........T.A.................T.....C..C........A..T.....C... Pimephales_tenellus_tenellu_R2S1 .............G......T.......C..A.....G...........T........C........A.....T..C... Pimephales_tenellus_parvice_R2S2 .............G......T.......C..A.....G...........T........C........A.....T..C... Pimephales_notatus_R1S1_________ .T..G.....C.........T........T.A.................T.....C..C........A..T.....C... MG570452.1_Pimephales_promelas_i .............G......T.......C..A........T........T........C........A..T..T..C..G MG570452.1_Pimephales_promelas_S .............G......T.......C..A........T...T....T........C........A..T..T..C..G AB626850.1_Megalobrama_terminali ATTTATAATGTTATTGTCACTGCCCATGCCTTCGTAATAATTTTCTTTATAGTAATACCAATTCTAATCGGAGGGTTCGG AP010779.1_Mylocheilus_caurinus_ ...........C..C.....C.....C.............................G........T..T..C..A..... AP011215.1_Gila_sp._1460_mitocho ..............C..T..C..............T....................G........C.....G..A..... AP011263.1_Scardinius_erythropht ...........C..C..T..C.....C.............................G........T..T........T.. AP011267.1_Algansea_lacustris_mi ..C..............T........C...........G.................G.....C.....T..C..A..T.. AP011268.1_Yuriria_alta_mitochon ..C........C.....T.....T..C.............................G..G.....T..T..C..A..... AP011273.1_Hybognathus_nuchalis_ ..C.....C..C.....T........C.....T.......................G........T..T.....A..... AP011274.1_Couesius_plumbeus_mit ........C..C..C..T..C.....C.............................G........T..T..G..A..... AP011275.1_Platygobio_gracilis_m ..C.....C.....C..T........C.............................G........T..T..C..A..T.. AP011277.1_Erimystax_dissimilis_ ..............C..T..C.....C.............................G........C..T..T..A..... AP011279.1_Pimephales_promelas_m ..C..C...........T.....T..C.....T........C.......................T..T..T........ AP011280.1_Clinostomus_elongatus ........C..C..C..T..C.....C.............................G........T..T..C..A..... AP012079.1_Luxilus_chrysocephalu ..C..............T.....T..C.....T.......................G........T..T..T..A..T.. AP012080.1_Macrhybopsis_gelida_m ..C.....C........T........C.............................G........T..T..C..A..T.. AP012083.1_Notropis_atherinoides ..C..............T.....T..C.....T.......................G........C..T..C..A..... AP012084.1_Notropis_baileyi_mito ..C..............T.....T..C.....T.......................G........C.....T..A..... AP012087.1_Cyprinella_galactura_ ..C..C...........T........C.....T................................T.....T..A..T.. AP012088.1_Hybopsis_lineapunctat ..C.....C.....C..T.....T..C.....T.......................G.....C..T..T..T..A..... AP012090.1_Luxilus_cornutus_mito ..C.....C........T.....T..C.....T....................C..G........T..T..T..A..T.. AP012091.1_Lythrurus_ardens_mito ..C.....C........T.....T..C.....T.......................G........T..T..T..A..... AP012092.1_Lythrurus_fumeus_mito .....C...........T.....T..C.....T.......................G..G.....T.....C..A..T.. AP012093.1_Lythrurus_lirus_mitoc ..C.....C........T.....T..C.....T.......................G........T..T..T..A..... AP012094.1_Lythrurus_umbratilis_ ..C.....C........T.....T..C.....T.......................G........T..T..T..A..... AP012095.1_Macrhybopsis_meeki_mi ..C.....C........T........C.............................G........T..T..C..A..T.. AP012097.1_Notropis_bifrenatus_m ..C..............T.....T..C.....T.......................G........T..T..C..A..... AP012098.1_Pimephales_sp._MCZunc ..C..............T.....T..C.....T.....G.................G...........T..T........ AP012100.1_Notropis_telescopus_m ..C..............T.....T..C.....T.......................G........C..T..C..A..... AP012101.1_Pimephales_notatus_mi ..C..C...........T.....T..C.....T.......................G...........T..T........ AP012102.1_Pimephales_vigilax_mi ..C..............T.....T..C.....T................................T..T..T........ AP012103.1_Pogonichthys_macrolep ........C..C..C..T..C..T..C.............................G........T..T..T..A..... AP012106.1_Richardsonius_balteat ........C.....C..T..A.....C..............C..............G........T..T..C..A..... AP012108.1_Notropis_chrosomus_mi ..C..............T........C.....T.......................G........T..T..T..A..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..C..............T.....T..C.....T................................T..T..T........ Pimephales_vigilax_R1S3_________ ..C..............T.....T..C.....T................................T..T..T........ DQ536429.1_Notropis_stramineus_m ..C.....C........T.....T..C.....T.....G.................G........T.....T.....T.. JX910141.1_Squaliobarbus_curricu .................................................................T...........T.. KC351187.1_Squaliobarbus_curricu .................................................................T...........T.. KT278765.1_Pimephales_promelas_m ..C..C...........T.....T..C.....T........C.......................T..T..T........ KT289925.1_Pimephales_promelas_m ..C..C...........T.....T..C.....T........C.......................T..T..T........ KT424924.1_Rhinichthys_osculus_m ........C.....C..T..C.....C........T....................G........T..T..C........ KU200257.1_Chanodichthys_ilishae ..C........C..............................................................A..T.. MF972070.1_Siphateles_bicolor_mo ........C........T..C..............T....................G........T..T.....A..... MG570407.1_Notropis_chalybaeus_v ..C..............T..C..T..C........G....................G........C..T..T..A..... MG570408.1_Notropis_bifrenatus_v ..C..............T.....T..C.....T.......................G........T..T..C..A..... MG570413.1_Notropis_heterolepis_ ..C..............T..C.....C.....T....................G..G........T.....T........ MG570416.1_Rhinichthys_obtusus_v ..............C.....C.....C.....T.......................G..T.....T..T..C..A..... MG570417.1_Rhinichthys_obtusus_v ..............C.....C.....C.....T.......................G..T.....T..T..C..A..... MG570420.1_Pimephales_notatus_vo ..C..............T.....T..C.....T.....G.................G...........T..T........ MG570443.1_Notropis_hudsonius_is ..C.....C.....C..T..............T.......................G........T..T..C..A..T.. MG570444.1_Rhinichthys_atratulus ..............C.....C.....C.....T.......................G..T.....T..T..C..A..... MG570445.1_Rhinichthys_atratulus ..............C.....C.....C.....T..G....................G..T.....T..T..C..A..... MG570447.1_Luxilus_cornutus_isol ..C.....C........T.....T..C.....T....................C..G........T..T..C..A..T.. MG570449.1_Luxilus_cornutus_isol ..C.....C........T.....T..C.....T....................C..G........T..T..C..A..T.. MG570450.1_Pimephales_notatus_is ..C..............T.....T..C.....T.....G.................G...........T..T........ MG570451.1_Notropis_bifrenatus_i ..C..............T.....T..C.....T.......................G........T..T..C..A..... MG570453.1_Exoglossum_maxillingu ..............C..T..C.....C.............................G........C..T..T..A..... MG570454.1_Pimephales_promelas_i ..C..C...........T.....T..C.....T........C....................A..T..T..T........ MG570455.1_Notropis_atherinoides ..C..............T.....T..C.....T.......................G........C..T..C..A..... MG570456.1_Notropis_atherinoides ..C..............T.....T..C.....T.......................G........C..T..C..A..... MG570457.1_Pimephales_notatus_is ..C..............A.....T..C.....T.....G.................G...........T..T........ MG570458.1_Pimephales_notatus_is ..C..............T.....T..C.....T.....G.................G...........T..T........ MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..C..............T.....T..C.....T.......................G........C..T..T.....T.. MT364325.1_Hybognathus_amarus_mi ..C.....C..C.....T........C.....T.......................G........T..T.....A..... MT501368.1_Gila_cypha_isolate_SN ..............C..T..C..............T....................G........T.....G..A..... MT501369.1_Notropis_simus_pecose ..C........C.....T.....T..C.....T.......................G..T.....C..T..T..A..... MT501378.1_Hybognathus_amarus_is ..C.....C..C.....T........C.....T.......................G........T..T.....A..... MT501385.1_Notropis_jemezanus_vo ..C..............T.....T..C.....T.......................G........C..T..C..A..... MT501391.1_Rhinichthys_osculus_i ........C.....C.....C.....C......................................T..T..C........ MT667239.1_Rhinichthys_osculus_t ........C.....C.....C.....C......................................T..T..C........ MT667242.1_Luxilus_cornutus_vouc ..C.....C........T.....T..C.....T....................C..G........T..T..C..A..T.. MW300340.1_Hybognathus_placitus_ ..C.....C........T........C.............................G........T..T..G..A..T.. MW300341.1_Hybognathus_placitus_ ..C.....C........T........C.............................G........T..T..G..A..T.. NC_013763.1_Mylocheilus_caurinus ...........C..C.....C.....C.............................G........T..T..C..A..... NC_033926.1_Opsopoeodus_emiliae_ .................T.....T........T........C..............G.....C..C..T..C..A..... NC_037008.1_Notropis_chalybaeus_ ..C..............T..C..T..C........G....................G........C..T..T..A..... NC_037009.1_Notropis_heterolepis ..C..............T..C.....C.....T....................G..G........T.....T........ NC_037010.1_Rhinichthys_obtusus_ ..............C.....C.....C.....T.......................G..T.....T..T..C..A..... NC_037014.1_Notropis_hudsonius_i ..C.....C.....C..T..............T.......................G........T..T..C..A..T.. NC_037015.1_Exoglossum_maxilling ..............C..T..C.....C.............................G........C..T..T..A..... NC_054086.1_Ptychocheilus_lucius ........C.....C..T..C..............T....................G........T..T..G..A..... NC_054257.1_Gila_cypha_isolate_S ..............C..T..C..............T....................G........T.....G..A..... NC_054259.1_Gila_nigrescens_isol ..............C..T..C..............T....................G........T.....G..A..... NC_054260.1_Hybognathus_amarus_i ..C.....C..C.....T........C.....T.......................G........T..T.....A..... NC_054262.1_Notropis_jemezanus_v ..C..............T.....T..C.....T.......................G........C..T..C..A..... Pimephales_notatus_R2S3_________ ..C..............T.....T..C.....T.....G.................G..............T........ Pimephales_tenellus_tenellu_R2S1 ..C..............T.....T..C........G.....C...........C..G........T..T..T..A..... Pimephales_tenellus_parvice_R2S2 ..C..............T.....T..C.....T..G.....C...........C..G........T..T..T..A..... Pimephales_notatus_R1S1_________ ..C..C...........T.....T..C.....T.....G.................G..............T........ MG570452.1_Pimephales_promelas_i ..C..C...........T.....T..C.....T........C.......................T..T..T........ MG570452.1_Pimephales_promelas_S ..C..C...........T.....T..C.....T........C.......................T..T..T........ AB626850.1_Megalobrama_terminali AAACTGACTCGTGCCGCTAATAATCGGAGCACCCGATATAGCATTCCCACGGATAAATAACATGAGCTTCTGACTTCTAC AP010779.1_Mylocheilus_caurinus_ .........T.....C..G........C.....A..C..G........G..A...........A...........C..G. AP011215.1_Gila_sp._1460_mitocho ...T........C..T........T..C.....T..C..............A...........A..T.....G.....T. AP011263.1_Scardinius_erythropht ............C..A.....G..T..T.....T..........................T.....T...........C. AP011267.1_Algansea_lacustris_mi ............A..T...........G.....T.................A...........A........G...T... AP011268.1_Yuriria_alta_mitochon .........T.....TT.G..G..T..G.....T.....G.....T.....A.....C.....A............T... AP011273.1_Hybognathus_nuchalis_ .........T..A..C.....G..T..G.......................A.....C.....A..T............. AP011274.1_Couesius_plumbeus_mit ............A..A.....G..T..T.....A..C..G..G.....G..A.....C..T..A..............G. AP011275.1_Platygobio_gracilis_m .........T..A..T..G...........G..T..C........T.....A...........A...........CT... AP011277.1_Erimystax_dissimilis_ ......G..T..A..C........T..T.....A..C..G...........A........T..A................ AP011279.1_Pimephales_promelas_m ...T.....T..A..T.................T..C..G.....T.....A...........A............T... AP011280.1_Clinostomus_elongatus .........T.....A........T..C.....A..C..G........C..A........T..A...........A..T. AP012079.1_Luxilus_chrysocephalu ...T.....T..A..T.....G.....G.....T..C........T.....A.....C.....A............T... AP012080.1_Macrhybopsis_gelida_m T...........A..T........T..G..G..T..............G..A........T..A................ AP012083.1_Notropis_atherinoides .........T..A..T.....G..T..G.....T........T........A...........A................ AP012084.1_Notropis_baileyi_mito ............A..C.....G...........T..C........T.....A..G..C.....A...........CT... AP012087.1_Cyprinella_galactura_ ...T.....T..A..T.....G..T..G.....T...........T.....A...........A........G..AT.G. AP012088.1_Hybopsis_lineapunctat .........T..A..T........T..C.....T.....G.....T.....A.....C.....A..T........CT.G. AP012090.1_Luxilus_cornutus_mito .........T..A..T.....G..T..G.....T...........T.....A..G..C.....A............T... AP012091.1_Lythrurus_ardens_mito .........T..T..T.....G.....G..G..T...........T.....A...........A..............T. AP012092.1_Lythrurus_fumeus_mito .........T..T..T.....G.....G.....T...........T.....A...........A...........C.... AP012093.1_Lythrurus_lirus_mitoc .........T..T..T.....G..T..G..G..T...........T.....A...........A..............T. AP012094.1_Lythrurus_umbratilis_ .........T..T..T.....G.....G..T..T...........T.....A...........A..............T. AP012095.1_Macrhybopsis_meeki_mi C.....G..T..A..T........T..G..G..T...........T.....A...........A................ AP012097.1_Notropis_bifrenatus_m G........T..A........G.....G.....T.................A.....C........T..T......T... AP012098.1_Pimephales_sp._MCZunc .........T..A..TT.......T........T..C........T.....A.....C.....A...........CT... AP012100.1_Notropis_telescopus_m G...........A..T.....G..T..G.....T...........T.....A...........A..T........CT... AP012101.1_Pimephales_notatus_mi .........T..A..TT.......T........T..C........T.....A.....C.....A...........CT... AP012102.1_Pimephales_vigilax_mi .........T..A..T........T..C.....A...........T.....A...........A............T... AP012103.1_Pogonichthys_macrolep ......G..T.....C...........C.....A.................A..G........A...........C.... AP012106.1_Richardsonius_balteat ......G..T..A..C...........T.....A..C..G........G..A...........A...........A..G. AP012108.1_Notropis_chrosomus_mi .........T..A........G........G..T........G..T.....A...........A............T... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .........T..A..T........T..C.....A...........T.....A...........A............T... Pimephales_vigilax_R1S3_________ .........T..A..T........T..C.....A...........T.....A...........A............T... DQ536429.1_Notropis_stramineus_m .........T..A..T..G..G.....G.....A.....G..G........A..G..C........T........CT... JX910141.1_Squaliobarbus_curricu ............A..A........T........T..C..............A........T..A.....T.......... KC351187.1_Squaliobarbus_curricu ............A..A........T........T..C..............A........T..A.....T.......... KT278765.1_Pimephales_promelas_m ...T.....T..A..T.................T..C..G.....T.....A...........A...........CT... KT289925.1_Pimephales_promelas_m ...T.....T..A..T.................T..C..G.....T.....A...........A............T... KT424924.1_Rhinichthys_osculus_m .........T..A..C.....G.....T.....T..C..G........G..A...........A................ KU200257.1_Chanodichthys_ilishae ............A..A...........G.....T.....G........G..A..............T............. MF972070.1_Siphateles_bicolor_mo ............C..C........T..C.....T.................A...........A..T.....G.....T. MG570407.1_Notropis_chalybaeus_v .........T..A..T.....G.....G.....T..C........T.....A..G..C.....A...........CT... MG570408.1_Notropis_bifrenatus_v G........T..A........G.....G.....T.................A.....C........T..T......T... MG570413.1_Notropis_heterolepis_ .........T..A..T.....G.....G.....T...........T.....A........T..A............T... MG570416.1_Rhinichthys_obtusus_v ......G..T..A..C........T..T.....T..C.....G.....G..A........T.................G. MG570417.1_Rhinichthys_obtusus_v ......G..T..A..C........T..T.....T..C.....G.....G..A........T.................G. MG570420.1_Pimephales_notatus_vo .........T..A..TT.......T........T..C........T.....A.....C.....A...........CT... MG570443.1_Notropis_hudsonius_is .........T..A..T.....G...........T...........T.....A........T..A................ MG570444.1_Rhinichthys_atratulus ......G..T..A..C........T..T.....T..C.....G.....G..A........T.................G. MG570445.1_Rhinichthys_atratulus ......G..T..A..C........T..T.....T..C.....G.....G..A........T.................G. MG570447.1_Luxilus_cornutus_isol .........T..A..T.....G..T..G.....T...........T.....A..G..C.....A............T... MG570449.1_Luxilus_cornutus_isol .........T..A..T.....G..T..G.....T...........T.....A..G..C.....A............T... MG570450.1_Pimephales_notatus_is .........T..A..TT.......T........T..C........T.....A.....C.....A...........CT... MG570451.1_Notropis_bifrenatus_i G........T..A........G.....G.....T.................A.....C........T..T......T... MG570453.1_Exoglossum_maxillingu ......G..T..A..C........T..T.....A..C..G...........A........T..A................ MG570454.1_Pimephales_promelas_i ...T.....T..A..T.................T..C..G.....T.....A...........A............T... MG570455.1_Notropis_atherinoides .........T..A..T.....G..T..G.....T........T........A...........A................ MG570456.1_Notropis_atherinoides .........T..A..T.....G..T..G.....T........T........A...........A................ MG570457.1_Pimephales_notatus_is .........T..A..TT.......T........T..C........T.....A.....C.....A...........CT... MG570458.1_Pimephales_notatus_is .........T..A..TT.......T........T..C........T.....A.....C.....A...........CT... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...T.....A..T..T.....G..T........T..C..G.....T.....A..G..C.....A............T... MT364325.1_Hybognathus_amarus_mi ............A..C.....G..T..........................A.....C.....A..T............. MT501368.1_Gila_cypha_isolate_SN ...T........T..C........T..C.....T.................A...........A..T..T..G.....T. MT501369.1_Notropis_simus_pecose ...T.....T..A..T.....G...........T.................A...........A...........CT... MT501378.1_Hybognathus_amarus_is ............A..C.....G..T..G.......................A.....C.....A..T............. MT501385.1_Notropis_jemezanus_vo .........T..A..T..G..G..T..G.....T..C.....T........A...........A........G....... MT501391.1_Rhinichthys_osculus_i ......G..T..A..T........T..T.....T..C...........G..A...........A................ MT667239.1_Rhinichthys_osculus_t ......G..T..A..T........T..T.....T..C...........G..A........T..A................ MT667242.1_Luxilus_cornutus_vouc .........T..A..T.....G..T..G.....T...........T.....A..G..C.....A............T... MW300340.1_Hybognathus_placitus_ .........T..A..T.....G..T..G.....T........G..T.....A..G...........T........C..G. MW300341.1_Hybognathus_placitus_ .........T..A..T.....G..T..G.....T........G..T.....A..G...........T........C.... NC_013763.1_Mylocheilus_caurinus .........T.....C..G........C.....A..C..G........G..A...........A...........C..G. NC_033926.1_Opsopoeodus_emiliae_ .........T.....T........T..C.....T..C...........T..A..G........A............T... NC_037008.1_Notropis_chalybaeus_ .........T..A..T.....G.....G.....T..C........T.....A..G..C.....A...........CT... NC_037009.1_Notropis_heterolepis .........T..A..T.....G.....G.....T...........T.....A........T..A............T... NC_037010.1_Rhinichthys_obtusus_ ......G..T..A..C........T..T.....T..C.....G.....G..A........T.................G. NC_037014.1_Notropis_hudsonius_i .........T..A..T.....G...........T...........T.....A........T..A................ NC_037015.1_Exoglossum_maxilling ......G..T..A..C........T..T.....A..C..G...........A........T..A................ NC_054086.1_Ptychocheilus_lucius ...T........C..T........T..C..G..T.................A...........A..T.....G.....T. NC_054257.1_Gila_cypha_isolate_S ...T........T..C........T..C.....T.................A...........A..T..T..G.....T. NC_054259.1_Gila_nigrescens_isol ...T........C..T........T..C.....T.................A...........A..T.....G.....T. NC_054260.1_Hybognathus_amarus_i ............A..C.....G..T..G.......................A.....C.....A..T............. NC_054262.1_Notropis_jemezanus_v .........T..A..T..G..G..T..G.....T..C.....T........A...........A........G....... Pimephales_notatus_R2S3_________ .........T..A..T........T........T..C........T.....A.....C.....A................ Pimephales_tenellus_tenellu_R2S1 .........T..A..C........T........T..C........T.....A...........A...........CT... Pimephales_tenellus_parvice_R2S2 .........T..A..C........T........T..C........T.....A..G........A...........CT... Pimephales_notatus_R1S1_________ .........T.....T........T........T..C........T.....A.....C.....A................ MG570452.1_Pimephales_promelas_i ...T.....T..A..T.................T..C..G.....T.....A...........A............T... MG570452.1_Pimephales_promelas_S ...T.....T..A..T.................T..C..G.....T.....A...........A............T... AB626850.1_Megalobrama_terminali CCCCCTCTTTCCTTCTATTACTTGCTTCCTCTGGTGTTGAGGCCGGAGCTGGAACAGGGTGAACAGTATACCCACCACTC AP010779.1_Mylocheilus_caurinus_ ....A..A.....A...C.G..A.................A...........G..G..A.....C..G.....C..G... AP011215.1_Gila_sp._1460_mitocho .T..A..G......T..C..T.A..C..T.....C...........G.....G.....A...........T..C...... AP011263.1_Scardinius_erythropht .T..G..A..T..G..TC....A.....T...........A..T..G...........A..................... AP011267.1_Algansea_lacustris_mi ....A..A.....A...C.G..A.....T.....A.....A..T..T..C..G.....A.....T..T.....C.....T AP011268.1_Yuriria_alta_mitochon ....A..A.....GT..C.G..A.....T..C.....C..A.....G..C........A.....T..T.....C.....T AP011273.1_Hybognathus_nuchalis_ ....A..A.....A.....G..A..C..T..C.....C..A.....G...........A.....T..T.....C.....T AP011274.1_Couesius_plumbeus_mit ....G..A.....G...C....G..C........A..C..A.....G.....G.....C...........T..T...... AP011275.1_Platygobio_gracilis_m ....A..A..T..GT.......A..C..T..............T........G.....T.....T..C.....C..G..T AP011277.1_Erimystax_dissimilis_ ....A..A.....G.....GT.G.....T.....C...........C.....G...........T..G..T......... AP011279.1_Pimephales_promelas_m ....G..A.....A..CC.C..A..C..T.....A...........G..C..T..G........T..T..T........T AP011280.1_Clinostomus_elongatus ....A..A..T..A.....G..A.....T.....C...........T..C........A.....G..G.....C...... AP012079.1_Luxilus_chrysocephalu .T..A..A.....GT.......A..C..T..A..C.....A..T..G...........A.....T..T.....C..G..T AP012080.1_Macrhybopsis_gelida_m ....A..A.....A......T.A.....T...........A..T..............A.....T..C.....C.....T AP012083.1_Notropis_atherinoides ....A..A.....GT..C..T.A..C..............A.....G..C........A.....T..C.....C.....T AP012084.1_Notropis_baileyi_mito ....A..G.....AT..C.G..A..C..T.....C.....A........C..G.....A.....T..T.....C.....T AP012087.1_Cyprinella_galactura_ ....A..A.........C.G..A.................A..T..G...........A.....T.....T..C.....T AP012088.1_Hybopsis_lineapunctat ....A..A.....A...C.G..A..C..T...........A..T........G.....A.....C..T..T..C...... AP012090.1_Luxilus_cornutus_mito ....A..A.....A...C.G..A..C..T.....C.................G...........T..T.....T.....T AP012091.1_Lythrurus_ardens_mito ....A..A.....CT.....T.A..C..T...........A...........G.....A.....T..T.....C.....T AP012092.1_Lythrurus_fumeus_mito ....A..A......T..C.G..A..C..............A.....G...........A.....T..C.....C.....T AP012093.1_Lythrurus_lirus_mitoc ....A..A.....CT..C..T.A..C..T...........A.....G.....T.....A.....T..T.....C.....T AP012094.1_Lythrurus_umbratilis_ ....A..A.....CT.....T.A..C..T...........A.................A.....T..T.....C.....T AP012095.1_Macrhybopsis_meeki_mi ....A..A.....GT.....T.A.....T...........A..T..G..C........A..G..T..C.....T.....T AP012097.1_Notropis_bifrenatus_m ....A..A.....AT..C..T.A..C..T.....A...........G...........A.....C..C..T..C.....T AP012098.1_Pimephales_sp._MCZunc ....G..A.....A..GC....A..C..T...........A.....G..C........A.....T..T.....C.....T AP012100.1_Notropis_telescopus_m ....A..A.....A...C.C..A..C..T...........A.....G.................T..T...........T AP012101.1_Pimephales_notatus_mi ....G..A.....A..GC....A..C..T...........A.....G..C........A.....T..T.....C.....T AP012102.1_Pimephales_vigilax_mi ....A..A.....A...C.G..A..C..T........C..A...........G.....A.....T..C.....C..G..T AP012103.1_Pogonichthys_macrolep ....A..A.....A...C.G..A..C.....C..C.....A.....G.....G..G...........G..T..C...... AP012106.1_Richardsonius_balteat .T..A..A..T..A.....G..A.....T.....C...........C..C..G...........G..G..T..T...... AP012108.1_Notropis_chrosomus_mi ....T..A.....AT.GC.GT.A..C..T.....A.....A.....G...........A.....T..T.....C.....T AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....A..A.....A...C.G..A..C..T........C..A...........G.....A.....T..C.....C..G..T Pimephales_vigilax_R1S3_________ ....A..A.....A...C.G..A..C..T........C..A...........G.....A.....T..C.....C..G..T DQ536429.1_Notropis_stramineus_m ....A..A.....A...C.G..A..C..T........C..A.....G..C..G.....T.....T..T.....C.....T JX910141.1_Squaliobarbus_curricu .............C..TC.G..G..C..T..C........A.....G.....T..............C.....G...... KC351187.1_Squaliobarbus_curricu .............C..TC.G..G..C..T..C........A.....G.....T..............C.....G...... KT278765.1_Pimephales_promelas_m ....G..A.....A..CC.C..A.....T.....A...........G..C.....G........T..T..T........T KT289925.1_Pimephales_promelas_m ....G..A.....A..CC.C..A..C..T.....A...........G..C..T...........T..T..T........T KT424924.1_Rhinichthys_osculus_m ....A..A..T..A.....G..A.....T.................T..G..G........G..C........C...... KU200257.1_Chanodichthys_ilishae ..........T..C...C.GT.G..C...........C..A..........................C............ MF972070.1_Siphateles_bicolor_mo ....A..G.........C..T.A..C..T.........................................T..C...... MG570407.1_Notropis_chalybaeus_v .T..A..G..T..CT.GC....A..C..T.....C.....A........C........A.....T..T.....C.....T MG570408.1_Notropis_bifrenatus_v ....A..A.....AT..C..T.A..C..T.....A...........G...........A.....C..C..T..C.....T MG570413.1_Notropis_heterolepis_ .T..A..G.....CT..C..T.A..C..T...........A.....G...........A.....T..T.....C.....T MG570416.1_Rhinichthys_obtusus_v ....G..A.........C....A.....T..............T..C.....G...........T........T..G... MG570417.1_Rhinichthys_obtusus_v ....G..A.........C....A.....T..............T..C.....G...........T........T..G... MG570420.1_Pimephales_notatus_vo ....G..A.....A..GC....A..C..T...........A.....G..C........A.....T..T.....C.....T MG570443.1_Notropis_hudsonius_is ....A..A..T..A......T.A.....T.....G.....A..T..G...........A.....T..C.....C.....T MG570444.1_Rhinichthys_atratulus ....G..A.....A........A.....T.....C........T..C.....G.....A..G..T........T..G... MG570445.1_Rhinichthys_atratulus ....G..A.....A........A.....T.....C........T..C.....G.....A..G..T........T..G... MG570447.1_Luxilus_cornutus_isol ....A..A.....A...C.G..A..C..T.....C.................G...........T..T.....C.....T MG570449.1_Luxilus_cornutus_isol ....A..A.....A...C.G..A..C..T.....C.................G...........T..T.....C.....T MG570450.1_Pimephales_notatus_is ....G..A.....A..GC....A..C..T...........A.....G..C........A.....T..T.....C.....T MG570451.1_Notropis_bifrenatus_i .T..A..A.....AT..C..T.A..C..T.....A...........G...........A.....C..C..T..C.....T MG570453.1_Exoglossum_maxillingu ....A..A.....G.....GT.G.....T.....C...........C.....G...........T..G..T......... MG570454.1_Pimephales_promelas_i ....A..A.....A..CC.C..A..C..T.....A...........G..C..T...........T..T..T........T MG570455.1_Notropis_atherinoides ....A..A.....GT..C..T.A..C..............A.....G..C........A.....T..C.....C.....T MG570456.1_Notropis_atherinoides ....A..A.....GT..C..T.A..C..............A.....G..C........A.....T..C.....C.....T MG570457.1_Pimephales_notatus_is ....G..A.....A..GC....A..C..T...........A.....G..C........A.....T..T.....C.....T MG570458.1_Pimephales_notatus_is ....G..A.....A..GC....A..C..T...........A.....G..C........A.....T..T.....C.....T MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ....A..A.....AT.G...T.A..C..T.....G.......................A.....T..T.....C.....T MT364325.1_Hybognathus_amarus_mi ....A..A.....AT.......A..C..T...........A.....G...........A.....T..T.....C.....T MT501368.1_Gila_cypha_isolate_SN .T..A..G.........C..T.A..C..T.....C...........G.....G...........G........C...... MT501369.1_Notropis_simus_pecose .......A.....AT.GC.G..A..C..T..C..G.....A..T..C.....G.....A.....T..T..T..T..C..T MT501378.1_Hybognathus_amarus_is ....A..A.....AT.......A..C..T...........A.....G...........A.....T..T.....C.....T MT501385.1_Notropis_jemezanus_vo ....T..A.....GT.....T.A..C..T..C........A.....G.................T..C.....C.....T MT501391.1_Rhinichthys_osculus_i ....A..A..T..G.....G..A.....T..............T..C.....G...........C.....T..C...... MT667239.1_Rhinichthys_osculus_t ....A..A..T..G.....G..A.....T..............T..C.....G...........C.....T..C...... MT667242.1_Luxilus_cornutus_vouc ....A..A.....A...C.G..A..C..T.....C.................G...........T..T.....C.....T MW300340.1_Hybognathus_placitus_ ....A..A.....A..TC.G..A..C..T........C..A...........G.....A.....T..T.....C.....T MW300341.1_Hybognathus_placitus_ ....A..A.....A..TC.G..A..C..T........C..A.................A.....T..T.....C.....T NC_013763.1_Mylocheilus_caurinus ....A..A.....A...C.G..A.................A...........G..G..A.....C..G.....C..G... NC_033926.1_Opsopoeodus_emiliae_ ....T..A..T..A..TC..T.A..C..............A.....C........C........T..C.....C.....T NC_037008.1_Notropis_chalybaeus_ .T..A..G..T..CT.GC....A..C..T.....C.....A........C........A.....T..T.....C.....T NC_037009.1_Notropis_heterolepis .T..A..G.....CT..C..T.A..C..T...........A.....G...........A.....T..T.....C.....T NC_037010.1_Rhinichthys_obtusus_ ....G..A.........C....A.....T..............T..C.....G...........T........T..G... NC_037014.1_Notropis_hudsonius_i ....A..A..T..A......T.A.....T.....G.....A..T..G...........A.....T..C.....C.....T NC_037015.1_Exoglossum_maxilling ....A..A.....G.....GT.G.....T.....C...........C.....G...........T..G..T......... NC_054086.1_Ptychocheilus_lucius .T..A..G.........C..T.A..C..T.....C........T..G.................G.....T..C...... NC_054257.1_Gila_cypha_isolate_S .T..A..G.........C..T.A..C..T.....C...........G.....G...........G........C...... NC_054259.1_Gila_nigrescens_isol ....A..G.....CT..C..T.A..C..T.....C...........G.....G.................T..C...... NC_054260.1_Hybognathus_amarus_i ....A..A.....AT.......A..C..T...........A.....G...........A.....T..T.....C.....T NC_054262.1_Notropis_jemezanus_v ....T..A.....GT.....T.A..C..T..C........A.....G.................T..C.....C.....T Pimephales_notatus_R2S3_________ ....A..A.....A...C.G..A..C..............A.....G..C........A.....T..T.....C.....T Pimephales_tenellus_tenellu_R2S1 ....A..A.....G...C....A..C..T...........A........C..G.....A.....T.....T..C.....T Pimephales_tenellus_parvice_R2S2 ....A........G...C....A..C..T...........A.....G..C..G.....A.....T.....T..C.....T Pimephales_notatus_R1S1_________ ....A..A.....A..GC.G..A..C..............A.....G..C........A.....T..T.....C.....T MG570452.1_Pimephales_promelas_i ....G..A.....A..CC.C..A..C..T.....A...........G..C..T...........T..T..T........T MG570452.1_Pimephales_promelas_S ....G..A.....A..CC.C..A..C..T.....A...........G..C..T..G........T..T..T........T AB626850.1_Megalobrama_terminali GCAGGCAATCTTGCTCACGCAGGAGCATCCGTAGACCTAACAATTTTCTCGCTTCACCTAGCAGGTGTGTCATCAATTTT AP010779.1_Mylocheilus_caurinus_ .....T..C..C..C........G.....A........T.....C.....A..C...........A..A........... AP011215.1_Gila_sp._1460_mitocho ........C..A..C.....G..G.....G.....T..T.....C.....A..A..T..G........C........... AP011263.1_Scardinius_erythropht .....T.....A..C..............A......T.......C........C.....G........A........... AP011267.1_Algansea_lacustris_mi ........C..A..C..T...........A.....T..C.....C.....T......T..........A........CC. AP011268.1_Yuriria_alta_mitochon .....T..C.....C........C.....A........C.....C.....T..C..............A........CC. AP011273.1_Hybognathus_nuchalis_ .....T........C..T.....C.....A........T...........C..C..T..G........A.........C. AP011274.1_Couesius_plumbeus_mit .....T.....C........C..C.....A....................C.................A........... AP011275.1_Platygobio_gracilis_m ........C.....C........G.....A........T..G..C.....T.................A.........C. AP011277.1_Erimystax_dissimilis_ .......................G.....A........C.....C.....T..C..............A..G........ AP011279.1_Pimephales_promelas_m .....T........C..T........C..A........C...........T..A...T..........A.........C. AP011280.1_Clinostomus_elongatus .....T..C.....C..T...........A..T.....T.....C.....A..C...........A..A..C..G..... AP012079.1_Luxilus_chrysocephalu ........C..C..C........G.....A........C.....C.....C.................A.........C. AP012080.1_Macrhybopsis_gelida_m .....T..C.....C........G..G..A........T...........C.................A.........C. AP012083.1_Notropis_atherinoides T....A..C.....C...........G..A..............C.....T..C..............A.........C. AP012084.1_Notropis_baileyi_mito .....T........C..............A..G.....T.....C.....C..C....................T...C. AP012087.1_Cyprinella_galactura_ .....T........C..............A..C.....C...........C..A..............A..T......C. AP012088.1_Hybopsis_lineapunctat .....T........C..T...........A........C...........T..C...T..........A........... AP012090.1_Luxilus_cornutus_mito .....T.....C..C..............A........C..T..C.....T..............A..A.........C. AP012091.1_Lythrurus_ardens_mito T....T..C.....C..T........G..A..G.....C...........C..C.....G........A.........C. AP012092.1_Lythrurus_fumeus_mito ........C.....C..............A........C...........C..C..T..G........T.........C. AP012093.1_Lythrurus_lirus_mitoc T....T........C........G..G..A..G.....T...........C..C.....G........A..C......C. AP012094.1_Lythrurus_umbratilis_ T....T..C.....C...........G..A........C...........C..C.....G........A.........C. AP012095.1_Macrhybopsis_meeki_mi ..G..T........C..............A........T...........C..C..T...........A.....C...C. AP012097.1_Notropis_bifrenatus_m .....T..C.....C..T...........A.....T..T..T........T..C..TT..........A.........C. AP012098.1_Pimephales_sp._MCZunc .....T..C.....C..T...........A........T..G..C.....T..G..TT....................C. AP012100.1_Notropis_telescopus_m ..G........C..C..T..G..G.....A........T.....C.....T..C..............A........CC. AP012101.1_Pimephales_notatus_mi .....T..C.....C..T...........A........T..G..C.....T..G..TT....................C. AP012102.1_Pimephales_vigilax_mi .....A........C........G.....A........T.....C.....TT.A..T...........A.........C. AP012103.1_Pogonichthys_macrolep ........C..C..C..............A........T.....C.....A..C..............A........... AP012106.1_Richardsonius_balteat .....T..C.....C..............A........T.....C.....A.....T....................... AP012108.1_Notropis_chrosomus_mi ..............C..............A........C.....C.....C.....T...........A.........C. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .....A........C........G.....A........T.....C.....TT.A..T...........A.........C. Pimephales_vigilax_R1S3_________ .....A........C........G.....A........T.....C.....TT.A..T...........A.........C. DQ536429.1_Notropis_stramineus_m ..............C........G.....T........C.....C..T..T..C........G.....A.........C. JX910141.1_Squaliobarbus_curricu ..............C.....G..G.............................C.......................... KC351187.1_Squaliobarbus_curricu ..............C.....G..G.............................C.......................... KT278765.1_Pimephales_promelas_m .....T........C..T........C..A........C...........T..G...T..........A.........C. KT289925.1_Pimephales_promelas_m .....T...........T........C..A........C...........T..A...T..........A.........C. KT424924.1_Rhinichthys_osculus_m ........C..C..C.....G........A........C.....C.....T...........G.....A........... KU200257.1_Chanodichthys_ilishae ........C.....C.....G.................G.............................T........... MF972070.1_Siphateles_bicolor_mo ........C..A..C.....C........A.....T........C.....A..A..T..G........C........... MG570407.1_Notropis_chalybaeus_v .....T........C..............A..............C.....C..C..............A.....T..C.. MG570408.1_Notropis_bifrenatus_v .....T..C.....C..T...........A.....T..T..T........T..C..TT..........A.........C. MG570413.1_Notropis_heterolepis_ .....T..C.....C..............A........C.....C.....T..C..............A.........C. MG570416.1_Rhinichthys_obtusus_v .....T..C..C..C..............A........C...........C..A..T...........A.....G..... MG570417.1_Rhinichthys_obtusus_v .....T..C..C..C..............A........C...........C..A..T...........A.....G..... MG570420.1_Pimephales_notatus_vo .....T..C.....C..T...........A........T..G..C.....T..G..TT....................C. MG570443.1_Notropis_hudsonius_is ..............C.....G..C.....A........C...........T.................C.........C. MG570444.1_Rhinichthys_atratulus .....T..C..C..C..............A........T...........C..A..T..............G..G..... MG570445.1_Rhinichthys_atratulus .....T..C..C..C..............A........T...........C..A..T.................G..... MG570447.1_Luxilus_cornutus_isol .....T.....C..C.....G........A........C..T..C.....T..............A..A.........C. MG570449.1_Luxilus_cornutus_isol .....T.....C..C.....G........A........C..T..C.....T..............A..A.........C. MG570450.1_Pimephales_notatus_is .....T..C.....C..T...........A........T..G..C.....T..G..TT....................C. MG570451.1_Notropis_bifrenatus_i .....T..C.....C..T...........A.....T..T..T........T..C..TT..........A.........C. MG570453.1_Exoglossum_maxillingu .......................G.....A........C.....C.....T..C..............A..G........ MG570454.1_Pimephales_promelas_i .....T...........T........C..A........C...........T..A...T..........A.........C. MG570455.1_Notropis_atherinoides T....A..C.....C...........G..A..............C.....T..C..............A.........C. MG570456.1_Notropis_atherinoides T....A..C.....C...........G..A..............C.....T..C..............A.........C. MG570457.1_Pimephales_notatus_is .....T..C.....C..T...........A........T..G..C.....T..G..TT....................C. MG570458.1_Pimephales_notatus_is .....T..C.....C..T...........A........T..G..C.....T..G..TT....................C. MK421554.1_Parabramis_pekinensis ..............C................................................................. MT333789.1_Notropis_lutipinnis_v .....T........C........G.....A.....T..C..G..C.....C..C..T..G........A........... MT364325.1_Hybognathus_amarus_mi .....T........C..T...........A........T.....C.....C..C.....G........A.........C. MT501368.1_Gila_cypha_isolate_SN ........C..G..C.....G..G.....G.....TT.............A..A..T..G..G.....C........... MT501369.1_Notropis_simus_pecose .....T.....C..C........C.....A........T.....C.....C..C..............A.........C. MT501378.1_Hybognathus_amarus_is .....T........C..T...........A........T.....C.....C..C.....G........A.........C. MT501385.1_Notropis_jemezanus_vo T....T..C.....C...........G..A....................C..C..............A..G......C. MT501391.1_Rhinichthys_osculus_i ........C..C..C.....G..C.....A........C.....C.....TT.A..............A..G......C. MT667239.1_Rhinichthys_osculus_t ........C..C..C.....G..C.....A........C.....C.....TT.A..............A..G......C. MT667242.1_Luxilus_cornutus_vouc .....T.....C..C.....G........A........C..T..C.....T..............A..A.........C. MW300340.1_Hybognathus_placitus_ .....T........C..T...........A........T.....C.....C...........................C. MW300341.1_Hybognathus_placitus_ .....T........C..T...........A........T.....C.....C...........................C. NC_013763.1_Mylocheilus_caurinus .....T..C..C..C........G.....A........T.....C.....A..C...........A..A........... NC_033926.1_Opsopoeodus_emiliae_ ........C.....C........C.....A........T.....C..T..C..A..TT..........A........... NC_037008.1_Notropis_chalybaeus_ .....T........C..............A..............C.....C..C..............A.....T..C.. NC_037009.1_Notropis_heterolepis .....T..C.....C..............A........C.....C.....T..C..............A.........C. NC_037010.1_Rhinichthys_obtusus_ .....T..C..C..C..............A........C...........C..A..T...........A.....G..... NC_037014.1_Notropis_hudsonius_i ..............C.....G..C.....A........C...........T.................C.........C. NC_037015.1_Exoglossum_maxilling .......................G.....A........C.....C.....T..C..............A..G........ NC_054086.1_Ptychocheilus_lucius ........C..A..C.....G..G.....A..............C.....A..A..T..G........C........... NC_054257.1_Gila_cypha_isolate_S ........C..G..C.....G..G.....G.....TT.............A..A..T..G..G.....C........... NC_054259.1_Gila_nigrescens_isol ........C..A........G..G.....A..............C.....A..A..T..G..G.....C........... NC_054260.1_Hybognathus_amarus_i .....T........C..T...........A........T.....C.....C..C.....G........A.........C. NC_054262.1_Notropis_jemezanus_v T....T..C.....C...........G..A....................T..C..............A..G......C. Pimephales_notatus_R2S3_________ ..C..T........C..T...........A........C...........T..A...T....................C. Pimephales_tenellus_tenellu_R2S1 .....T........C..............A........C...........C..A..TT..........A.........C. Pimephales_tenellus_parvice_R2S2 .....T........C..............A..G.....C...........CT.A..TT.......C..A.........C. Pimephales_notatus_R1S1_________ ..C..T........C..T...........A........C...........T..G...T....................C. MG570452.1_Pimephales_promelas_i .....T...........T........C..A........C...........T..A...T..........A.........C. MG570452.1_Pimephales_promelas_S .....T........C..T........C..A........C...........T..A...T..........A.........C. AB626850.1_Megalobrama_terminali AGGTGCAATTAACTTCATCACCACAACTATCAATATAAAACCACCAGCCATCTCTCAATACCAAACACCCCTGTTTGTCT AP010779.1_Mylocheilus_caurinus_ ...G...G.A........T..T....TC..T.....G.....C...........C.....T........T..C.....A. AP011215.1_Gila_sp._1460_mitocho ...G...G.A.....T..T.......T...T...........C........T..C.................C..C..G. AP011263.1_Scardinius_erythropht ...C...G..........T..T....T...T.....G..G..C........T..C.....T........G........A. AP011267.1_Algansea_lacustris_mi ...G...G.......T..T.......T...T.....G.....T....................G........T..C..G. AP011268.1_Yuriria_alta_mitochon ...G...G.A..T.....T.......T...T..C..G.....C.....A..T....................C..C..A. AP011273.1_Hybognathus_nuchalis_ ...G...G....T.....T..T....T...T..C..G.....T.....A...........T........T..C.....G. AP011274.1_Couesius_plumbeus_mit ......TG....T..T..T..T..T.T...T.....G.....C...........C.....T........T..C.....A. AP011275.1_Platygobio_gracilis_m ...G...G.A.....T..T.......TC..T.....G.....C.................T...........T..C..A. AP011277.1_Erimystax_dissimilis_ ...G...G.C.....T.....T....T...T..C..G.....C...........C.....T.....G..T..C.....G. AP011279.1_Pimephales_promelas_m ...G...G....T..T..T..T....T...T..C........C.....A...........T.....G.....C..C..A. AP011280.1_Clinostomus_elongatus ...G...G....T..T..T.......T...T.....G.....C...........C.....T...........C.....A. AP012079.1_Luxilus_chrysocephalu G..G...G....T........T....T...T..C..G.....T.....A..T.....G..T...........C..C..G. AP012080.1_Macrhybopsis_gelida_m ...A...G.......T..T..T....T...T...........C....................G......T.A.....A. AP012083.1_Notropis_atherinoides ...G...G....T...........G.T...T..C..G.....C.....A.......................C.....A. AP012084.1_Notropis_baileyi_mito ...C...G....T........T....T...T..C..G.....C.....A........G..T.....G..A..C..C..A. AP012087.1_Cyprinella_galactura_ ...C...G....T.....T..T..T.TC..T..C..G.....C.....A...........T..G.....G..C..C.... AP012088.1_Hybopsis_lineapunctat ...G..GG.C..T.............T...T..C..G.....C.....A...........T.....T.....C..C..A. AP012090.1_Luxilus_cornutus_mito ...G...G....T.............T...T..C..G.....T.....A........G..T...........C..C..A. AP012091.1_Lythrurus_ardens_mito ...G...G.A..T.....T.......T...T.....G.....T.....A...........T...........C..C..A. AP012092.1_Lythrurus_fumeus_mito ...G...G.C..T..T..T.......T...T.....G.....T.....A........G..T.....G.....C..C..A. AP012093.1_Lythrurus_lirus_mitoc ...G...G.A..T.....T.......T...T.....G.....T.....A...........T...........C..C..A. AP012094.1_Lythrurus_umbratilis_ ...G...G.A..T.....T.......T...T.....G.....T.....A...........T...........T..C..A. AP012095.1_Macrhybopsis_meeki_mi ...G...G.......T..T..T....T...T...........C........T..................T.A.....A. AP012097.1_Notropis_bifrenatus_m ...A...G....T..T..T.......T...T..C..G.....T.....A.......................C..C..G. AP012098.1_Pimephales_sp._MCZunc ...G...G....T..T..T..T....T...T.....G.....C.....A.....A..G..T........T..C.....G. AP012100.1_Notropis_telescopus_m ...G...G....T.............T...T..C..G.....T.....A...........T...........C..C..A. AP012101.1_Pimephales_notatus_mi ...G...G....T..T..T..T....T...T.....G.....C.....A.....A..G..T........T..C.....G. AP012102.1_Pimephales_vigilax_mi ...G...G....T..T.....T....T...T.....G.....C.....A...........T...........C..C..A. AP012103.1_Pogonichthys_macrolep ...G...G.A.....T..T..T....T...T..C..G..G..C...........C.....T........T..C.....A. AP012106.1_Richardsonius_balteat ...A...G....T..T..T.......TC.....C..G.....C...........C.....T........T..C.....G. AP012108.1_Notropis_chrosomus_mi ...G...G.G..T.............T...T..C..G.....C.....A........G..T...........C..C..A. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...G...G....T..T.....T....T...T.....G.....C.....A...........T...........C..C..A. Pimephales_vigilax_R1S3_________ ...G...G....T..T.....T....T...T.....G.....C.....A...........T...........C..C..A. DQ536429.1_Notropis_stramineus_m ...G...G.G........T..T....T...T..C..G.....G.....A..T........T...........C.....A. JX910141.1_Squaliobarbus_curricu ...A.................T........T..C.................T........T........T..C.....T. KC351187.1_Squaliobarbus_curricu ...A.................T........T..C.................T........T........T..C.....T. KT278765.1_Pimephales_promelas_m ...G...G....T..T..T..T....T...T..C........C.....A...........T.....G.....C..C..G. KT289925.1_Pimephales_promelas_m ...G...G....T..T..T..T....T...T..C........C.....A...........T.....G.....C..C..A. KT424924.1_Rhinichthys_osculus_m ...G...G.......T..........T...T.....G.....C...........C.....T.....G..T..C.....G. KU200257.1_Chanodichthys_ilishae ...............T..............T..C..........................T.................T. MF972070.1_Siphateles_bicolor_mo ...G...G.A.....T..T.......T...T...........C...........C..G..T...........C..C..A. MG570407.1_Notropis_chalybaeus_v ...G...G....T.............T...T.....G..G..C.....A........G..T.....G.....C..C..A. MG570408.1_Notropis_bifrenatus_v ...A...G....T..T..T.......T...T..C..G.....T.....A.......................C..C..G. MG570413.1_Notropis_heterolepis_ ...A...G....T.............T...T..C..G..G..C.....A..T........T...........C..C..A. MG570416.1_Rhinichthys_obtusus_v ...G...G.......T..T.......T.........G.....C...........C..G..T.....G..T..C.....G. MG570417.1_Rhinichthys_obtusus_v ...G...G.......T..T.......T.........G.....C...........C..G..T.....G..T..C.....G. MG570420.1_Pimephales_notatus_vo ...G...G....T..T..T..T....T...T.....G.....C.....A.....A..G..T........T..C.....G. MG570443.1_Notropis_hudsonius_is ...G...G....T.....T.......T...T..C........T.....A...........T........T..T..C..A. MG570444.1_Rhinichthys_atratulus ...G...G.......T..T..T....T...T.....G.....C...........C..G..T.....G..T..C.....A. MG570445.1_Rhinichthys_atratulus ...G...G.......T..T..T....T...T.....G.....C...........C..G..T.....G..T..C.....A. MG570447.1_Luxilus_cornutus_isol ...G...G....T.............T...T..C..G.....T.....A........G..T...........C..C..G. MG570449.1_Luxilus_cornutus_isol ...G...G....T.............T...T..C..G.....T.....A........G..T...........C..C..G. MG570450.1_Pimephales_notatus_is ...G...G....T..T..T..T....T...T.....G.....C.....A.....A..G..T........T..C.....G. MG570451.1_Notropis_bifrenatus_i ...A...G....T..T..T.......T...T..C..G.....T.....A.......................C..C..G. MG570453.1_Exoglossum_maxillingu ...G...G.C.....T.....T....T...T..C..G.....C...........C.....T.....G..T..C.....G. MG570454.1_Pimephales_promelas_i ...G...G....T..T..T..T....T...T..C........C.....A...........T.....G.....C..C..A. MG570455.1_Notropis_atherinoides ...G...G....T...........G.T...T..C..G.....C.....A.......................C.....A. MG570456.1_Notropis_atherinoides ...G...G....T...........G.T...T..C..G.....C.....A.......................C.....A. MG570457.1_Pimephales_notatus_is ...G...G....T..T..T..T....T...T.....G.....C.....A.....A..G..T........T..C.....G. MG570458.1_Pimephales_notatus_is ...G...G....T..T..T..T....T...T.....G.....C.....A.....A..G..T........T..C.....G. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v G..A...G.A..T..T..T.......T...T...........C.....A........G..T...........C..C..A. MT364325.1_Hybognathus_amarus_mi ...A...G....T.....T..T....T...T..C..G.....T..G..A...........T........T..C.....A. MT501368.1_Gila_cypha_isolate_SN ...G...G.A.....T..T.......T...T...........C........T..C.................C..C..A. MT501369.1_Notropis_simus_pecose ...G...G.A..T.....T.......T...T..C..G.....C.....A.....C..G..T.....G.....C..C..A. MT501378.1_Hybognathus_amarus_is ...A...G....T.....T..T....T...T..C..G.....T.....A...........T........T..C.....A. MT501385.1_Notropis_jemezanus_vo ...G...G....T.....T..A..G.T...T..C..G.....C.....A........G..............C..C..A. MT501391.1_Rhinichthys_osculus_i ...G...G.C.....T..........T...T.....G.....C...........C.....T.....G..T..C.....A. MT667239.1_Rhinichthys_osculus_t ...G...G.C.....T..........T...T.....G.....C...........C.....T.....G..T..C.....A. MT667242.1_Luxilus_cornutus_vouc ...G...G....T.............T...T..C..G.....T.....A........G..T...........C..C..G. MW300340.1_Hybognathus_placitus_ G..G..GG....T.....T..T....T...T.....G.....T.....A........G..T........T..C..C..G. MW300341.1_Hybognathus_placitus_ G..G..GG....T.....T..T....T...T.....G.....T.....A........G..T........T..C..C..G. NC_013763.1_Mylocheilus_caurinus ...G...G.A........T..T....TC..T.....G.....C...........C.....T........T..C.....A. NC_033926.1_Opsopoeodus_emiliae_ G..C...G....T........T....T...T.....G.....C.....G...........T.....G.....C.....A. NC_037008.1_Notropis_chalybaeus_ ...G...G....T.............T...T.....G..G..C.....A........G..T.....G.....C..C..A. NC_037009.1_Notropis_heterolepis ...A...G....T.............T...T..C..G..G..C.....A..T........T...........C..C..A. NC_037010.1_Rhinichthys_obtusus_ ...G...G.......T..T.......T.........G.....C...........C..G..T.....G..T..C.....G. NC_037014.1_Notropis_hudsonius_i ...G...G....T.....T.......T...T..C........T.....A...........T........T..T..C..A. NC_037015.1_Exoglossum_maxilling ...G...G.C.....T.....T....T...T..C..G.....C...........C.....T.....G..T..C.....G. NC_054086.1_Ptychocheilus_lucius ...G...G.A.....T..T.......T...T..C........C........T..C.................C..C..A. NC_054257.1_Gila_cypha_isolate_S ...G...G.A.....T..T.......T...T...........C........T..C.................C..C..A. NC_054259.1_Gila_nigrescens_isol ...G...G.A.....T..........T...T...........C........T..C.................C..C..A. NC_054260.1_Hybognathus_amarus_i ...A...G....T.....T..T....T...T..C..G.....T.....A...........T........T..C.....A. NC_054262.1_Notropis_jemezanus_v ...G...G....T.....T..A..G.T...T..C..G.....C.....A........G..............C..C..A. Pimephales_notatus_R2S3_________ ...G...G....T..T..T..T....T...T..C..G.....C.....A.....G.....T........T..C.....G. Pimephales_tenellus_tenellu_R2S1 ...G...G....T..T..T..T....T...T.....G.....C.....A.......................C..C..A. Pimephales_tenellus_parvice_R2S2 ...G...G....T..T..T..T....T...T.....G.....C.....A.......................C..C..A. Pimephales_notatus_R1S1_________ ...G...G....T..T..T..T....T...T..C..G.....C.....A.....G.....T........T..C.....G. MG570452.1_Pimephales_promelas_i ...G...G....T..T..T..T....T...T..C........C.....A...........T.....G.....C..C..A. MG570452.1_Pimephales_promelas_S ...G...G....T..T..T..T....T...T..C........C.....A...........T.....G.....C..C..A. AB626850.1_Megalobrama_terminali GAGCTGTGCTTGTAACAGCCGTACTTCTTCTCCTATCCCTGCCAGTCCTAGCCGCTGGAATTACTATGCTCCTCACAGAT AP010779.1_Mylocheilus_caurinus_ ....C..A........C..T..T.....C...T....A..............T..C........A.....T........C AP011215.1_Gila_sp._1460_mitocho .G..C..A..............T.........T....A........G..G..T..C........G.....T..T..C... AP011263.1_Scardinius_erythropht ....C..A..G........T..C.....A..T.....A..A.....T.....T..C........A.....T..T.....C AP011267.1_Algansea_lacustris_mi ....C..A..C.....T..T..C.....A..T.....AT.A..T..T..G..T..C....................T..C AP011268.1_Yuriria_alta_mitochon .G..C..A........T..A..T.....A..T..G..AT.A...........T..C...........A..T.....T..C AP011273.1_Hybognathus_nuchalis_ ....C..A.....C..T.....T.....G........T..A..C........T...........C..A..T.....T..C AP011274.1_Couesius_plumbeus_mit .G..C.................T...........G..AT.A.....T.....T...........A..A..T..T.....C AP011275.1_Platygobio_gracilis_m .G..C..A........C.....T.....A........A..T..T.....G..T..C...........A..T.....T..C AP011277.1_Erimystax_dissimilis_ .......A........T........C..A..A.....A..A..T.....G..T..C........A..A..T........C AP011279.1_Pimephales_promelas_m ....C..A........T.....G.....G........AT.A..T..T.....T..C...........A..T.....C... AP011280.1_Clinostomus_elongatus .G..C..A........C..T..T.....C.....G..A..T.....T.....T..A........A..A..T..A.....C AP012079.1_Luxilus_chrysocephalu .G..C..A........T.....T.....A.....G..A..A..C..T..T..T..C........C..A..T.....G..C AP012080.1_Macrhybopsis_gelida_m ....C...........C.....T.....A........GT.A..C..A.....T..C........A.....T..T..T..C AP012083.1_Notropis_atherinoides ....C..A.....G..T.....T...T.A........G..A..C..T.....T..C...........A..T.....T..C AP012084.1_Notropis_baileyi_mito ....C..A..C.....T..T..T.....A.....G..AT.A..C........T..C.................T..C..C AP012087.1_Cyprinella_galactura_ .G..C..A........T.....C.....A..T..C..A..A..C..TT....T..G...........A..T..T..T..C AP012088.1_Hybopsis_lineapunctat .G..C..A.....T..T..T..T.....A.....G..A..A..C........T..C..G.....C..A..T.....T..C AP012090.1_Luxilus_cornutus_mito .G..C..A........T..T..T.....A...........A..C..T..T..T..C........A..A..T.....T..C AP012091.1_Lythrurus_ardens_mito .G..C..A........T........CT.A........A..A..C........T..C...........A..T.....T..C AP012092.1_Lythrurus_fumeus_mito .G..C..A........T..T..T..CT.A..T..G..A..A..C..G.....G..C..G........A..T.....T..C AP012093.1_Lythrurus_lirus_mitoc .G..C..A........T.....T..CT.A.....G..A.....C........T..C...........A..T.....C..C AP012094.1_Lythrurus_umbratilis_ .G..C..A........T........CT.A........A..A..C........T..C...........A..T.....T..C AP012095.1_Macrhybopsis_meeki_mi ....C..A........C.....T...T.A........AT.A..T..A.....T...........A..A..T..T..T..C AP012097.1_Notropis_bifrenatus_m .......A........T.....T.....A........A..A..T........T..............A..T..A..T..C AP012098.1_Pimephales_sp._MCZunc ....C...........T...........A.....T..A..A..C..T.....T..C..C...........T..A..T... AP012100.1_Notropis_telescopus_m .G..C..A........T.....G.....A..T.....A..A..T..T.....T..C........A..A..T.....T..C AP012101.1_Pimephales_notatus_mi ....C...........T...........A...T....A..A..T..T.....T..C..T...........T..A..T... AP012102.1_Pimephales_vigilax_mi .G..A..A.....T..T..A..G.....G........AT.A..C..T.....T..C...........A..T..T..T... AP012103.1_Pogonichthys_macrolep ....C..A........T..T..T..C..C........A...........G..T..C..G.....A.....T........C AP012106.1_Richardsonius_balteat .G..C..A........C..T..T..C..C..T.....A...........G..T..C........A..A..T........C AP012108.1_Notropis_chrosomus_mi .G..C........T..T.....T.....A..T..G..GT.A..C..T.....T..C........C..A..T..T..T..C AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .G..A..A.....T..T..A..G.....G........AT.A..C..T.....T..C...........A..T..T..T... Pimephales_vigilax_R1S3_________ .G..A..A.....T..T..A..G.....G........AT.A..C..T.....T..C...........A..T..T..T... DQ536429.1_Notropis_stramineus_m .G..G..A.....G..T.....T...T.A..T.....A.....C..T..G..T..............A..T.....T... JX910141.1_Squaliobarbus_curricu ....C..A...........T..............G.................T..C........A........T.....C KC351187.1_Squaliobarbus_curricu ....C..A...........T..............G.................T..C........A........T.....C KT278765.1_Pimephales_promelas_m ....C..A........T..T..G.....G........A..A..T..T.....T..C...........A..T.....T... KT289925.1_Pimephales_promelas_m .G..C..A........T..T..G.....G........A..A..T..T.....T..C...........A..T.....C... KT424924.1_Rhinichthys_osculus_m .G..C...........C..T..G..C..A........A..A..T........A..C........G..A..T.....T..C KU200257.1_Chanodichthys_ilishae .......A.............................T..A..........................A.....T.....C MF972070.1_Siphateles_bicolor_mo ....C..T..............T..C.....T.....A..A.....G..G..T..C.....C..A.....T..T...... MG570407.1_Notropis_chalybaeus_v .G..C..A........T.....T..C..A........AT.A..T........T.....T..............T..T..C MG570408.1_Notropis_bifrenatus_v .......A........T.....T.....A........A..A..T........T..............A..T..A..T..C MG570413.1_Notropis_heterolepis_ .G..C..A........T..T..T.....A.....C..A..A..T..T.....T..C........C..A..T..T..T..C MG570416.1_Rhinichthys_obtusus_v ....C..A........T..T..C..C..A.....G..G..A..T.....T..T..C..G.....A..A..T..G..T..C MG570417.1_Rhinichthys_obtusus_v ....C..A........T..T..C..C..A.....G..G..A..T.....T..T..C..G.....A..A..T..G..T..C MG570420.1_Pimephales_notatus_vo ....C...........T...........A.....T..A..A..C..T.....T..C..C...........T..A..T... MG570443.1_Notropis_hudsonius_is ....G..A...A.C..T..T..T.....A.....G..G..A..C..T.....T..C...........A........T..C MG570444.1_Rhinichthys_atratulus ....C..A........T..T..T..C..A.....G.....A..T.....T..T..C........A..A..T..G..T..C MG570445.1_Rhinichthys_atratulus ....C..A........T..T..T..C..A.....G.....A..T.....T..T..C........A..A..T..G..T..C MG570447.1_Luxilus_cornutus_isol .G..C..A.....G..T..T..T.....A...........A..C..T..T..T..C........A..A..T.....T..C MG570449.1_Luxilus_cornutus_isol .G..C..A.....G..T..T..T.....A...........A..C..T..T..T..C........A..A..T.....T..C MG570450.1_Pimephales_notatus_is ....C...........T...........A.....T..A..A..C..T.....T..C..C...........T..A..T... MG570451.1_Notropis_bifrenatus_i .......A........T.....T.....A........A..A..T........T..............A..T..A..T..C MG570453.1_Exoglossum_maxillingu .......A........T........C..A..A.....A..A..T.....G..T..C........A..A..T........C MG570454.1_Pimephales_promelas_i .G..C..A........T..T..G.....G........A..A..T..T.....T..C...........A..T.....C... MG570455.1_Notropis_atherinoides ....C..A.....G..T..T..T...T.A........G..A..C..T.....T..C...........A..T.....T..C MG570456.1_Notropis_atherinoides ....C..A.....G..T.....T...T.A........G..A..C..T.....T..C...........A..T.....T..C MG570457.1_Pimephales_notatus_is ....C...........T...........A.....T..A..A..C..T.....T..C..C...........T..A..T... MG570458.1_Pimephales_notatus_is ....C...........T...........A.....T..A..A..C..T.....T..C..C...........T..A..T... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .G..C..A.....T..T.....T.....A.....G..AT.A..C..T...........G........A........T..C MT364325.1_Hybognathus_amarus_mi ....C..A.....C..T.....T.....G........T..A..C..T.....T..C........C.....T.....T..C MT501368.1_Gila_cypha_isolate_SN ....C..A..............T.........T....A..A.....G..G..T..C........A.....T..T..C... MT501369.1_Notropis_simus_pecose .G..G..A........T.....T.....A.....T..A..A.....TT....T..C........G..A..T.....T..C MT501378.1_Hybognathus_amarus_is ....C..A.....C..T.....T.....G........T..A..C..T.....T..C........C.....T.....T..C MT501385.1_Notropis_jemezanus_vo .............G..T.....T...T.A........G..A..C..T.....T..C..G........A..T.....T..C MT501391.1_Rhinichthys_osculus_i ....C..T.....G..C..T..T..C..A..T.....A..A..T.....G..A..C........A.....T.....T..C MT667239.1_Rhinichthys_osculus_t ....C..T.....G..C..T..T.....A..T.....A..A..T.....G..A..C........A.....T.....T..C MT667242.1_Luxilus_cornutus_vouc .G..C..A.....G..T..T..T.....A...........A..C..T..T..T..C........A..A..T.....T..C MW300340.1_Hybognathus_placitus_ .G..C..A..C..G..T..T..T.....A........A..A..C..T.....T..C.....C..C.....T.....T..C MW300341.1_Hybognathus_placitus_ .G..C..A..C..G..T..T..T.....A........A..A..C..T.....T..C.....C..C.....T.....T..C NC_013763.1_Mylocheilus_caurinus ....C..A........C..T..T.....C...T....A..............T..C........A.....T........C NC_033926.1_Opsopoeodus_emiliae_ .......A........T..T..G.....AT.AT....A..T..C........T..C...........A..T.....T... NC_037008.1_Notropis_chalybaeus_ .G..C..A........T.....T..C..A........AT.A..T........T.....T..............T..T..C NC_037009.1_Notropis_heterolepis .G..C..A........T..T..T.....A.....C..A..A..T..T.....T..C........C..A..T..T..T..C NC_037010.1_Rhinichthys_obtusus_ ....C..A........T..T..C..C..A.....G..G..A..T.....T..T..C..G.....A..A..T..G..T..C NC_037014.1_Notropis_hudsonius_i ....G..A...A.C..T..T..T.....A.....G..G..A..C..T.....T..C...........A........T..C NC_037015.1_Exoglossum_maxilling .......A........T........C..A..A.....A..A..T.....G..T..C........A..A..T........C NC_054086.1_Ptychocheilus_lucius ....C..A.....C...........C......T....A..A.....G..G..T..C........A.....T..T..C... NC_054257.1_Gila_cypha_isolate_S ....C..A..............T.........T....A..A.....G..G..T..C........A.....T..T..C... NC_054259.1_Gila_nigrescens_isol .G..C..A..............T........TT....A..A.....G..G..T..C........A.....T..T..C... NC_054260.1_Hybognathus_amarus_i ....C..A.....C..T.....T.....G........T..A..C..T.....T..C........C.....T.....T..C NC_054262.1_Notropis_jemezanus_v .............G..T.....T...T.A........G..A..C..T.....T..C..G........A..T.....T..C Pimephales_notatus_R2S3_________ ....C..A.....G..T.....G...........C..A..A..C........T..C..C.....C..A.....A..T... Pimephales_tenellus_tenellu_R2S1 ....C..A........T.....G.....A..T..C..AT.A..C........T..............A..A.....T... Pimephales_tenellus_parvice_R2S2 ....C..A........T.....G.....A..T..C..AT.A..C........T.................A.....T... Pimephales_notatus_R1S1_________ ....C..A.....G..T.....G...........C..A..A..C........T..C..C.....C..A.....A..T... MG570452.1_Pimephales_promelas_i .G..C..A........T..T..G.....G........A..A..T..T.....T..C...........A..T.....C... MG570452.1_Pimephales_promelas_S ....C..A........T.....G.....G........AT.A..T..T.....T..C...........A..T.....C... AB626850.1_Megalobrama_terminali CGAAATCTAAACACCACATTCTTTGATCCAGCAGGAGGAGGAGACCCAATCCTATATCAGCACCTATTTTGATTCTTCGG AP010779.1_Mylocheilus_caurinus_ ..C.....T..T...........C..C.....G..G.......................A..T.....C........T.. AP011215.1_Gila_sp._1460_mitocho ........T.................C..G.................C..TT....C..A.....G..C........T.. AP011263.1_Scardinius_erythropht ..T.....T..T...........C..C.....G..................T.......A...T....C........T.. AP011267.1_Algansea_lacustris_mi ......T....T........T..C..C..T...........T........T..G.....A..TT....C........... AP011268.1_Yuriria_alta_mitochon ..G...T....T...........C..C...........G..C..T..............A..TT....C........T.. AP011273.1_Hybognathus_nuchalis_ ..T..CT....T..............C........G........T..T..T..G.....A...T.............T.. AP011274.1_Couesius_plumbeus_mit .....C..T.................C...........C.................C..A.....G..C..G........ AP011275.1_Platygobio_gracilis_m ...........T..............C..G..G.....G..T.....T...........A..TT....C........... AP011277.1_Erimystax_dissimilis_ ........T..T...........C..C..T..G.....G..G.................A..T.....C........T.. AP011279.1_Pimephales_promelas_m ..T...T....T..T..G........C..T...........T.....T..TT....C..A...T.G..C........... AP011280.1_Clinostomus_elongatus ........T..T..T........C..C..G.....G...............T.......A...T....C........T.. AP012079.1_Luxilus_chrysocephalu ..T..CT....T..............C..G...........T..T...........C..A..TT....C........... AP012080.1_Macrhybopsis_gelida_m ......T...................C..............T........T........A..TT....C........T.. AP012083.1_Notropis_atherinoides ..T..C.....T..T........C..C.....G..G.....T.....C........C.....TT.............T.. AP012084.1_Notropis_baileyi_mito ..T..CT....T..............C..G........G........T..T.....C..A..TT....C..G.....T.. AP012087.1_Cyprinella_galactura_ ..C..CT..........G.....C..C........C.....T........T..G.....A...T....C........... AP012088.1_Hybopsis_lineapunctat ..T..CT....T..T..............G.....G.....T..T..C..T........A...T....C........... AP012090.1_Luxilus_cornutus_mito ..T...T................C..C..G...........T..T..G..T........A..TT....C........... AP012091.1_Lythrurus_ardens_mito ..T..CT...................C.....G..G.....T.....T..T..G..C..A..T.....C.....T..... AP012092.1_Lythrurus_fumeus_mito ..T...T....T.....C........C..C..G..T..G..T.....T.....C..C..A..TT....C..G..T..... AP012093.1_Lythrurus_lirus_mitoc ..T..CT...................C..G.....G.....T..T..T..T..G..C..A..T.....C.....T..T.. AP012094.1_Lythrurus_umbratilis_ ..T..CT...................C.....G..G.....T.....T..T..G..C..A..T.....C.....T..... AP012095.1_Macrhybopsis_meeki_mi ......T...................C..T........G..T........T........A..TT....C........... AP012097.1_Notropis_bifrenatus_m ..T..C.....T..T...........C..G.....G.....T..T..C...........A..TT.............T.. AP012098.1_Pimephales_sp._MCZunc ..T...T....T..........................G.....T..T..T..C.....A........C........... AP012100.1_Notropis_telescopus_m ..T..CT....T..T...........C........G..C..T.....C..T..T..C......T.G..C........... AP012101.1_Pimephales_notatus_mi ..T...T....T...........C..C..G.....C..G.....T..T..T..C.....A........C........... AP012102.1_Pimephales_vigilax_mi ..T...T....T........T.....C.................T..T..TT....C..A...T....C........T.. AP012103.1_Pogonichthys_macrolep ..T.....T..T...........C..C..G.....G.......................A..TT....C........T.. AP012106.1_Richardsonius_balteat ........T..............C..C..G.....G...............T.......A........C........T.. AP012108.1_Notropis_chrosomus_mi ..T..CT.......T...........C..G..............T..C..T..G........TT....C........... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..T...T....T........T.....C.................T..T..TT....C..A...T....C........T.. Pimephales_vigilax_R1S3_________ ..T...T....T........T.....C.................T..T..TT....C..A...T....C........T.. DQ536429.1_Notropis_stramineus_m ..T..C........T........C..C..G..G.....G..T.....T..T..G..C......T....C..G........ JX910141.1_Squaliobarbus_curricu ..T.....T.................C..T........G....................A...T.G..C..G.....T.. KC351187.1_Squaliobarbus_curricu ..T.....T.................C..T........G....................A...T.G..C..G.....T.. KT278765.1_Pimephales_promelas_m ..T...T....T..T...........C..T...........T.....T..TT....C..A...T.G..C........... KT289925.1_Pimephales_promelas_m ..T...T....T..T...........C..T...........T.....T..TT....C..A...T.G..C........... KT424924.1_Rhinichthys_osculus_m ..T.....T..T...........C..C.....C..G.......................A..T.....C........T.. KU200257.1_Chanodichthys_ilishae ...........T..............C..G.....C..G..............G.....A.....G..C........... MF972070.1_Siphateles_bicolor_mo ........T....................C..G..G...........G..T.....C..A.....G..C........T.. MG570407.1_Notropis_chalybaeus_v ..T..CT....T..T...........C..G...........G..T..T..T........A..TT....C........... MG570408.1_Notropis_bifrenatus_v ..T..C.....T..T...........C..G.....G.....T..T..C...........A..TT.............T.. MG570413.1_Notropis_heterolepis_ ..T...T....T..............C..T.....G.....T..T..C..T..G.....A..TT....C........... MG570416.1_Rhinichthys_obtusus_v ..T.....T..............C..C.....C..G...........C...T....C..A..T.....C........T.. MG570417.1_Rhinichthys_obtusus_v ..T.....T..............C..C.....C..G...........C...T....C..A..T.....C........T.. MG570420.1_Pimephales_notatus_vo ..T...T....T..........................G.....T..T..T..C.....A........C........... MG570443.1_Notropis_hudsonius_is ..T...T....T...........C..C...........G..T........T.....C..A..TT....C........... MG570444.1_Rhinichthys_atratulus ..T.....T.................C.....C..G...............T....C..A..T.....C........T.. MG570445.1_Rhinichthys_atratulus ..T.....T.................C.....C..G...............T....C..A..T.....C........T.. MG570447.1_Luxilus_cornutus_isol ..T...T....T...........C..C..G.....G.....T..T..G..T........A..TT....C........... MG570449.1_Luxilus_cornutus_isol ..T...T....T...........C..C..G.....G.....T..T..G..T........A..TT....C........... MG570450.1_Pimephales_notatus_is ..T...T....T..........................G.....T..T..T..C.....A........C........... MG570451.1_Notropis_bifrenatus_i ..T..C.....T..T...........C..G.....G.....T..T..C...........A..TT.............T.. MG570453.1_Exoglossum_maxillingu ........T..T...........C..C..T..G.....G..G.................A..T.....C........T.. MG570454.1_Pimephales_promelas_i ..T...T....T..T...........C..T...........T.....T..TT....C..A...T.G..C........... MG570455.1_Notropis_atherinoides ..T..C.....T..T........C..C.....G..G.....T.....C........C.....TT.............T.. MG570456.1_Notropis_atherinoides ..T..C.....T..T........C..C.....G..G.....T.....C........C.....TT.............T.. MG570457.1_Pimephales_notatus_is ..T...T....T..........................G.....T..T..T..C.....A........C........... MG570458.1_Pimephales_notatus_is ..T...T....T..............C...........G.....T..T..T..C.....A........C........... MK421554.1_Parabramis_pekinensis .................................................................G.............. MT333789.1_Notropis_lutipinnis_v ..T..CT....T..T...........C..G........G.....T..T..T........A..TT....C........T.. MT364325.1_Hybognathus_amarus_mi ..T..CT....T..............C........G...........T..T..G..C..A...T.............T.. MT501368.1_Gila_cypha_isolate_SN ........T.....T...........C..G.....G...........C..TT....C..A..T..G..C........T.. MT501369.1_Notropis_simus_pecose ..T..CT....T..T..G.....C..C..............C..T..T..T..G.....A..TT....C........... MT501378.1_Hybognathus_amarus_is ..T..CT....T..............C........G...........T..T..G..C..A...T.............T.. MT501385.1_Notropis_jemezanus_vo ..T..CT....T..T.................G..G.....T.....C........C.....TT....C........T.. MT501391.1_Rhinichthys_osculus_i ..T.....T..T..A........C.....G..T..G...............T....C..A..T.....C........T.. MT667239.1_Rhinichthys_osculus_t ..T.....T..T..A........C.....G..T..G...............T....C..A..T.....C........T.. MT667242.1_Luxilus_cornutus_vouc ..T..CT....T...........C..C..G.....G.....T..T..G..T........A..TT....C........... MW300340.1_Hybognathus_placitus_ ..T..CT....T..T.................C..G........T..T..T..G..C..A...T....C........... MW300341.1_Hybognathus_placitus_ ..T..CT....T..T.................C..G........T..T..T..G..C..A...T....C........... NC_013763.1_Mylocheilus_caurinus ..C.....T..T...........C..C.....G..G.......................A..T.....C........T.. NC_033926.1_Opsopoeodus_emiliae_ ..T..CT....T..T...........C..G........G..T..T..T..T.....C..A.................T.. NC_037008.1_Notropis_chalybaeus_ ..T..CT....T..T...........C..G...........G..T..T..T........A..TT....C........... NC_037009.1_Notropis_heterolepis ..T...T....T..............C..T.....G.....T..T..C..T..G.....A..TT....C........... NC_037010.1_Rhinichthys_obtusus_ ..T.....T..............C..C.....C..G...........C...T....C..A..T.....C........T.. NC_037014.1_Notropis_hudsonius_i ..T...T....T...........C..C...........G..T........T.....C..A..TT....C........... NC_037015.1_Exoglossum_maxilling ........T..T...........C..C..T..G.....G..G.................A..T.....C........T.. NC_054086.1_Ptychocheilus_lucius ........T.....T...........C..G.....G...........C..TT....C..A.....G..C........T.. NC_054257.1_Gila_cypha_isolate_S ........T.....T...........C..G.....G...........C..TT....C..A..T..G..C........T.. NC_054259.1_Gila_nigrescens_isol .....C..T.................C..G.....G...........C..TT....C..A.....G..C........T.. NC_054260.1_Hybognathus_amarus_i ..T..CT....T..............C........G...........T..T..G..C..A...T.............T.. NC_054262.1_Notropis_jemezanus_v ..T..CT....T..T.................G..G.....T.....C........C.....TT....C........T.. Pimephales_notatus_R2S3_________ ..T...T....T..T...........C..............G.....C..T..C.....A........C........... Pimephales_tenellus_tenellu_R2S1 ..T...T....T..T...........C.....T.....G..T.....T..T..G..C......T................ Pimephales_tenellus_parvice_R2S2 ..T...T....T..T...........C.....T.....G..T.....T..T.....C......T....C........... Pimephales_notatus_R1S1_________ ..T...T....T..T...........C..............G.....C..T..C.....A........C........... MG570452.1_Pimephales_promelas_i ..T...T....T..T...........C..T...........T.....T..TT....C..A...T.G..C........... MG570452.1_Pimephales_promelas_S ..T...T....T..T..G........C..T...........T.....T..TT....C..A...T.G..C........... AB626850.1_Megalobrama_terminali CCACCCAGAGGTTTACATTCTCATTTTACCCGGATTTGGAATCATTTCACACGTTGTAGCCTACTACGCAGGCAAAAAAG AP010779.1_Mylocheilus_caurinus_ .........A.....T.....T.................T...........T.................C.......... AP011215.1_Gila_sp._1460_mitocho ...............T...T.A.................T..T........T..C..............C........G. AP011263.1_Scardinius_erythropht T........A...........T.................T..T........T..C..............C..T....... AP011267.1_Algansea_lacustris_mi ...T........C........T........A..G.....G..T..C.....T........T..T........T....... AP011268.1_Yuriria_alta_mitochon A..T..G..A...........T........T..G.....G..T........T..C........T........T....... AP011273.1_Hybognathus_nuchalis_ .........A.....T.....T........T..C.............................T..T.....T....... AP011274.1_Couesius_plumbeus_mit .........A..C..T.....A.................T..T..C..............T......T.T..T....... AP011275.1_Platygobio_gracilis_m T..T........C........T...........G........T.......................T............. AP011277.1_Erimystax_dissimilis_ T..............T.....T........A..C..C..C...........T..............T............. AP011279.1_Pimephales_promelas_m ...T.....A..C..T.....T....................T........T..C........T..T.....T....... AP011280.1_Clinostomus_elongatus .........A.....T.....T.................T..T...........C.................T....... AP012079.1_Luxilus_chrysocephalu T..T........C........T....................T........T..C........T..T............. AP012080.1_Macrhybopsis_gelida_m T..T........C........T........A..G.............................T..T.....T....... AP012083.1_Notropis_atherinoides T..T.....A..C..T.....T........T.....C.....T........T..............T............. AP012084.1_Notropis_baileyi_mito T..T.................T....................T...........C..G........TT.G.......... AP012087.1_Cyprinella_galactura_ ............C........T..............C.................A...........T.....T.....G. AP012088.1_Hybopsis_lineapunctat T...........C..T.....T..C.................T........T............................ AP012090.1_Luxilus_cornutus_mito T..T........C........T....................T........T..............T............. AP012091.1_Lythrurus_ardens_mito T..T.................T...........G........T........T..............T..G.......... AP012092.1_Lythrurus_fumeus_mito T..T........C..T.....T........T........T...........T...........T..T............. AP012093.1_Lythrurus_lirus_mitoc T..T.................T........T..G........T........T...........T..T............. AP012094.1_Lythrurus_umbratilis_ T..T.................T...........G........T........T..............T..G.......... AP012095.1_Macrhybopsis_meeki_mi T...........C.....C..T...........G...........C.................................. AP012097.1_Notropis_bifrenatus_m T...........C..T.....T...........G.....G..T........T.................G.......... AP012098.1_Pimephales_sp._MCZunc ...T.................T..C.....T..G........T........TA.............T.....T....... AP012100.1_Notropis_telescopus_m ............C..T.....T........T..C.....G..T...........C..G........T..G.......... AP012101.1_Pimephales_notatus_mi ...T.................T..C.....T..G........T........TA.............T.....T....... AP012102.1_Pimephales_vigilax_mi T..T...........T.....T.........................................T..T............. AP012103.1_Pogonichthys_macrolep T..............T.....T.................T...........T..............T..C.......... AP012106.1_Richardsonius_balteat T..T.................T...C..........C..T..T........T.....G.........T.G.......... AP012108.1_Notropis_chrosomus_mi T..T.....A...........T...........G........T....................T..T........G.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T..T...........T.....T.........................................T..T............. Pimephales_vigilax_R1S3_________ T..T...........T.....T.........................................T..T............. DQ536429.1_Notropis_stramineus_m ...T........C.............................T.............................T....... JX910141.1_Squaliobarbus_curricu T........A.....T.....T...C....T.....C.................C......................... KC351187.1_Squaliobarbus_curricu T........A.....T.....T...C....T.....C.................C......................... KT278765.1_Pimephales_promelas_m ...T.....A..C..T.....T....................T........T..C...........T.....T.....G. KT289925.1_Pimephales_promelas_m ...T.....A..C..T.....T...........G........T........T..C...........T.....T....... KT424924.1_Rhinichthys_osculus_m T..T...........T.....T........T..G.....C...........T..............T..G.......... KU200257.1_Chanodichthys_ilishae .........A.....T........C.....T..............C..C............................... MF972070.1_Siphateles_bicolor_mo ............C..T...T.A.................T...........T..C..............C..T....... MG570407.1_Notropis_chalybaeus_v T..T.....A..C........T..............C.....T.......................T............. MG570408.1_Notropis_bifrenatus_v T...........C..T.....T...........G.....G..T........T.................G.......... MG570413.1_Notropis_heterolepis_ ...T.................T.................G..T........T.....G...........G.......... MG570416.1_Rhinichthys_obtusus_v ...T..G........T.....T..............C..C..T........T........T.....T.....T....... MG570417.1_Rhinichthys_obtusus_v ...T..G........T.....T..............C..C..T........T........T.....T.....T....... MG570420.1_Pimephales_notatus_vo ...T.................T..C.....T..G........T........TA.............T.....T....... MG570443.1_Notropis_hudsonius_is ...T.................T........A..C.....G..T.....G..T........T.....T..G..T....... MG570444.1_Rhinichthys_atratulus ...T...........T.....T.................C..T........T........T...........T....... MG570445.1_Rhinichthys_atratulus ...T...........T.....T.................C..T........T........T...........T....... MG570447.1_Luxilus_cornutus_isol T..T........C........T........T...........T........T..............T............. MG570449.1_Luxilus_cornutus_isol T..T........C........T........T...........T........T..............T............. MG570450.1_Pimephales_notatus_is ...T.................T..C.....T..G........T........TA.............T.....T....... MG570451.1_Notropis_bifrenatus_i T...........C..T.....T...........G.....G..T........T.................G.......... MG570453.1_Exoglossum_maxillingu T..............T.....T........A..C..C..C...........T..............T............. MG570454.1_Pimephales_promelas_i ...T.....A..C..T.....T...........G........T........T..C...........T.....T....... MG570455.1_Notropis_atherinoides T..T.....A..C..T.....T...C....T.....C..G..T........T..............T............. MG570456.1_Notropis_atherinoides T..T.....A..C..T.....T........T.....C..G..T........T..............T............. MG570457.1_Pimephales_notatus_is ...T.................T..C.....T..G........T........TA.............T.....T....... MG570458.1_Pimephales_notatus_is ...T.................T..C.....T..G........T........TA.............T.....T....... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .........A..C........T..............C.....T..C..............T.....T............. MT364325.1_Hybognathus_amarus_mi .........A.....T.....T........T..C.............................T........T....... MT501368.1_Gila_cypha_isolate_SN ...............T..CT.A.................T..T........T..C..............C.......... MT501369.1_Notropis_simus_pecose .....................T..............C.....T....................T..T.....T....... MT501378.1_Hybognathus_amarus_is .........A.....T.....T........T..C.............................T........T....... MT501385.1_Notropis_jemezanus_vo T...........C..T.....T........T.....C..G..T........T..............T............. MT501391.1_Rhinichthys_osculus_i G..T...........T.....T...........G.....C...........T..............T.....T....... MT667239.1_Rhinichthys_osculus_t G..T...........T.....T...........G.....C...........T..............T.....T....... MT667242.1_Luxilus_cornutus_vouc T..T........C........T........T...........T........T..............T............. MW300340.1_Hybognathus_placitus_ .....................T........T..C........T..C........C...........T............. MW300341.1_Hybognathus_placitus_ .....................T........T..C........T..C........C...........T............. NC_013763.1_Mylocheilus_caurinus .........A.....T.....T.................T...........T.................C.......... NC_033926.1_Opsopoeodus_emiliae_ T........A.....T.....T........T....................T....................A....... NC_037008.1_Notropis_chalybaeus_ T..T.....A..C........T..............C.....T.......................T............. NC_037009.1_Notropis_heterolepis ...T.................T.................G..T........T.....G...........G.......... NC_037010.1_Rhinichthys_obtusus_ ...T..G........T.....T..............C..C..T........T........T.....T.....T....... NC_037014.1_Notropis_hudsonius_i ...T.................T........A..C.....G..T.....G..T........T.....T..G..T....... NC_037015.1_Exoglossum_maxilling T..............T.....T........A..C..C..C...........T..............T............. NC_054086.1_Ptychocheilus_lucius ...............T...T.A.................T...........T..C............T.C..T....... NC_054257.1_Gila_cypha_isolate_S ...............T..CT.A.................T..T........T..C..............C.......... NC_054259.1_Gila_nigrescens_isol ...............T...T.A..C...........C..T..T........T..C..G...........G..T....... NC_054260.1_Hybognathus_amarus_i .........A.....T.....T........T..C.............................T........T....... NC_054262.1_Notropis_jemezanus_v T...........C..T.....T........T.....C..G..T........T..............T............. Pimephales_notatus_R2S3_________ ...T...........T.....T...C....T..G........T.........A.............T.....T..G.... Pimephales_tenellus_tenellu_R2S1 T..T........C..T.....T........T...........T.....G..T...........T..T............. Pimephales_tenellus_parvice_R2S2 T..T........C..T.....T..C.....T...........T.....G..T...........T..T............. Pimephales_notatus_R1S1_________ ...T...........T.....T...C....T..G........T.........A.............T.....T..G.... MG570452.1_Pimephales_promelas_i ...T.....A..C..T.....T...........G........T........T..C...........T.....T....... MG570452.1_Pimephales_promelas_S ...T.....A..C..T.....T....................T........T..C........T..T.....T....... AB626850.1_Megalobrama_terminali AACCATTCGGCTACATAGGAATGGTTTGAGCCATGATGGCTATCGGCCTCCTGGGGTTTATTGTATGAGCCCACCACATG AP010779.1_Mylocheilus_caurinus_ .......T........G..G..A..C........A.....C..T........C........C..C........T..T... AP011215.1_Gila_sp._1460_mitocho .......T.....T...........C.....T..A..............T..T........C..C........T..T... AP011263.1_Scardinius_erythropht .......T..............A.................A..T........T..A..C.....T...........T... AP011267.1_Algansea_lacustris_mi ......................A..C.....T.....A..C...........A..A........T........T...... AP011268.1_Yuriria_alta_mitochon ..........T..T........A........T........C..............A........C..G.....T.....A AP011273.1_Hybognathus_nuchalis_ .......T.....T........A........T.....A..C...........A..A..C..............T...... AP011274.1_Couesius_plumbeus_mit .G.....T.................A.................T..T.....T...........C...........T... AP011275.1_Platygobio_gracilis_m .............T........A........T........C..T........A...........T.....T..T.....A AP011277.1_Erimystax_dissimilis_ ..........T..T........A........T...........T........T.....C..C..C.....T..T.....A AP011279.1_Pimephales_promelas_m ......................A........T........A.....T.....A...........C............... AP011280.1_Clinostomus_elongatus .......T..T..T........A..A........A..A..C........T..C........C..C........T.....A AP012079.1_Luxilus_chrysocephalu ..........T..T..G.....A........T........C..T........A..A........C..G.....T.....A AP012080.1_Macrhybopsis_gelida_m ......................A..C.....T........C...........A..A........T........T.....A AP012083.1_Notropis_atherinoides ................G.....A..C.....T........C...........A..A........C...........T... AP012084.1_Notropis_baileyi_mito ....C.....T..T..G.....A........T..A..A..............A..A..C.....C........T...... AP012087.1_Cyprinella_galactura_ .G........T..T........A.................C..T..T..T..A..T........C........T...... AP012088.1_Hybopsis_lineapunctat .............T..G...........G..A..A.....C........T..A..A........C........T...... AP012090.1_Luxilus_cornutus_mito ..........T..T..G.....A..C.....T........C..T........A..A.................T...... AP012091.1_Lythrurus_ardens_mito .............T..G..T..A..C.....T........C..T........A..A........T........T...... AP012092.1_Lythrurus_fumeus_mito .............T........A..C.....T...........T...........A........C............... AP012093.1_Lythrurus_lirus_mitoc ....G...........G.....A..C.....T........C..T........A..A........T........T...... AP012094.1_Lythrurus_umbratilis_ .............T..G..G..A..C.....T........C..T........A..A........T........T...... AP012095.1_Macrhybopsis_meeki_mi ..........T..T..G..G..A..C.....T........C..T........A..A........T.....T..T.....A AP012097.1_Notropis_bifrenatus_m ..........T..T..G..T.....A.....T..A........T........A...........C........T..T..A AP012098.1_Pimephales_sp._MCZunc .............T..G.....A........T.................T..A...........C.....T.....T... AP012100.1_Notropis_telescopus_m .............T........A..C.....T........C..T........A.....C.....C........T...... AP012101.1_Pimephales_notatus_mi .............T..G.....A........T.................T..A...........C.....T.....T... AP012102.1_Pimephales_vigilax_mi .............T..G.....A..C.....T..A...........T..T..............C........T..T..A AP012103.1_Pogonichthys_macrolep .......T..............A..C........A..A..C..T........C..A.....C..C.....T..T..T... AP012106.1_Richardsonius_balteat ....G..T.....T.............................T........C........C..C..G..T..T.....A AP012108.1_Notropis_chrosomus_mi .......T..T..T........A..C.....T..A.....C..T......T.A.....C.....C........T...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .............T..G.....A..C.....T..A...........T..T..............C........T..T..A Pimephales_vigilax_R1S3_________ .............T..G.....A..C.....T..A...........T..T..............C........T..T..A DQ536429.1_Notropis_stramineus_m ......................A..A..G..G.....A..C...........A..C........C........T...... JX910141.1_Squaliobarbus_curricu .......T..T...........A..C..............C..T........A..A........G........T...... KC351187.1_Squaliobarbus_curricu .......T..T...........A..C..............C..T........A..A........G........T...... KT278765.1_Pimephales_promelas_m ......................A........T.................T..A..A........C............... KT289925.1_Pimephales_promelas_m ......................A........T........A.....T.....A...........C............... KT424924.1_Rhinichthys_osculus_m .............T........A........A........C..T........C........C..C..G.....T.....A KU200257.1_Chanodichthys_ilishae .........................C.....T..A.....C..T..T........A...........G..T.....T... MF972070.1_Siphateles_bicolor_mo .G.....T..T........G.....C.....T...........T.....T..T........C...........T.....A MG570407.1_Notropis_chalybaeus_v ....C..T.....T........A..C.....T..A..A...........T..A..A........C........T...... MG570408.1_Notropis_bifrenatus_v ..........T..T..G..T.....A.....T..A........T........A...........C........T..T..A MG570413.1_Notropis_heterolepis_ ..........T..T........A........T..A........T..T.....A..A........C........T...... MG570416.1_Rhinichthys_obtusus_v ....C........T..G..T..A.....G...........C..T........C..A..C..C..C........T...... MG570417.1_Rhinichthys_obtusus_v ....C........T..G..T..A.....G...........C..T........C..A..C..C..C........T...... MG570420.1_Pimephales_notatus_vo .............T..G.....A........T.................T..A...........C.....T.....T... MG570443.1_Notropis_hudsonius_is .......T.....T...........A.....T..A...........T.....A..A..C.....T........T..T... MG570444.1_Rhinichthys_atratulus ....G........T..G..T..A.....G...........C..T........C........C..C..............A MG570445.1_Rhinichthys_atratulus ....G........T..G..T..A.....G...........C..T........C........C..C..............A MG570447.1_Luxilus_cornutus_isol ..........T..T..G.....A..C.....T........C..T........A..A.................T.....A MG570449.1_Luxilus_cornutus_isol ..........T..T..G.....A..C.....T........C..T........A..A.................T.....A MG570450.1_Pimephales_notatus_is .............T..G.....A........T.................T..A...........C.....T.....T... MG570451.1_Notropis_bifrenatus_i ..........T..T..G..T.....A.....T..A........T........A...........C........T..T..A MG570453.1_Exoglossum_maxillingu ..........T..T........A........T...........T........T.....C..C..C.....T..T.....A MG570454.1_Pimephales_promelas_i ..........T...........A........T........A.....T.....A...........C............... MG570455.1_Notropis_atherinoides ................G.....A..C.....T........C...........A..A........C...........T... MG570456.1_Notropis_atherinoides ................G.....A..C.....T........C...........A..A........C...........T... MG570457.1_Pimephales_notatus_is .............T..G.....A........T.....A...........T..A...........C.....T.....T... MG570458.1_Pimephales_notatus_is .............T..G.....A........T.................T..A...........C.....T.....T... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ................G..G..A..C.....T........C..T........A..A..C.....T........T.....A MT364325.1_Hybognathus_amarus_mi .......T..T..T........A........T..A..A..C..T........A..A..C........G.....T..T... MT501368.1_Gila_cypha_isolate_SN .......T.....T...........C.....T..A........T.....T..T.....C..C..C...........T... MT501369.1_Notropis_simus_pecose .............T..G.....A..C.....T...........T........A...........C............... MT501378.1_Hybognathus_amarus_is .......T..T..T........A........T..A..A..C..T........A..A..C........G.....T..T... MT501385.1_Notropis_jemezanus_vo .G.....T..T.....G.....A..C.....T........C...........A..A........C...........T... MT501391.1_Rhinichthys_osculus_i .............T..G.....A........G........C...........C........C..C..G.....T.....A MT667239.1_Rhinichthys_osculus_t .............T..G.....A........G........C...........C.....C..C..C..G.....T.....A MT667242.1_Luxilus_cornutus_vouc ..........T..T..G.....A..C.....T........C..T........A..A.................T.....A MW300340.1_Hybognathus_placitus_ ......................A........T........C...........A..A..............A......... MW300341.1_Hybognathus_placitus_ ......................A........T........C...........A..A..............A......... NC_013763.1_Mylocheilus_caurinus .......T........G..G..A..C........A.....C..T........C........C..C........T..T... NC_033926.1_Opsopoeodus_emiliae_ ..........T..T.....G..A.....G..T..A..A.....T........A..C..............T..T..T..A NC_037008.1_Notropis_chalybaeus_ ....C..T.....T........A..C.....T..A..A...........T..A..A........C........T...... NC_037009.1_Notropis_heterolepis ..........T..T........A........T..A........T..T.....A..A........C........T...... NC_037010.1_Rhinichthys_obtusus_ ....C........T..G..T..A.....G...........C..T........C..A..C..C..C........T...... NC_037014.1_Notropis_hudsonius_i .......T.....T...........A.....T..A...........T.....A..A..C.....T........T..T... NC_037015.1_Exoglossum_maxilling ..........T..T........A........T...........T........T.....C..C..C.....T..T.....A NC_054086.1_Ptychocheilus_lucius .......T.....T...........C.....T..A..............T..T.....C..C..C........T..T..A NC_054257.1_Gila_cypha_isolate_S .......T.....T...........C.....T..A........T.....T..T.....C..C..C...........T... NC_054259.1_Gila_nigrescens_isol .......T.................C.....T..A........T.....T..T..A.....C..T...........T... NC_054260.1_Hybognathus_amarus_i .......T..T..T........A........T..A..A..C..T........A..A..C........G.....T..T... NC_054262.1_Notropis_jemezanus_v .G.....T..T.....G.....A..C.....T........C...........A..A........C...........T... Pimephales_notatus_R2S3_________ .......T.....T..G.....A........T.................T..............C.....T.....T... Pimephales_tenellus_tenellu_R2S1 .............T..G.....A........T........C...........A...........C........T...... Pimephales_tenellus_parvice_R2S2 .............T..G.....A........T........C...........A...........C........T...... Pimephales_notatus_R1S1_________ .......T.....T..G.....A........T.................T..............C.....T.....T... MG570452.1_Pimephales_promelas_i ......................A........T........A.....T.....A...........C............... MG570452.1_Pimephales_promelas_S ......................A........T........A.....T.....A...........C............... AB626850.1_Megalobrama_terminali TTCACTGTCGGAATAGACGTAGACACTCGTGCATACTTTACATCCGCAACAATAATTATTGCCATCCCAACAGGCGTAAA AP010779.1_Mylocheilus_caurinus_ ........T.................C.....C..........................C...........T..T..... AP011215.1_Gila_sp._1460_mitocho ........T.................C.....C...........T..T....................T..C..T..... AP011263.1_Scardinius_erythropht .....C..T..G.....T........C.....C..T.................G........T........T..T..... AP011267.1_Algansea_lacustris_mi ..T.......................C.....C..T...................................C..T..... AP011268.1_Yuriria_alta_mitochon ..T.....T.................C.....C........G..T....................T.....T..T..... AP011273.1_Hybognathus_nuchalis_ ..T.....T.................C.....C...........T..C..............T..T.....C..T..T.. AP011274.1_Couesius_plumbeus_mit ..........................C.....C...........T........G...........T.....G..G..... AP011275.1_Platygobio_gracilis_m ..............G...........C..C..C...........T...........C........T.....C..T..... AP011277.1_Erimystax_dissimilis_ ..........................C.....C................................T.....C..T..... AP011279.1_Pimephales_promelas_m ..T.....T.................C.....C...........T..T.......................C..T..T.. AP011280.1_Clinostomus_elongatus ..........................C.....C...........T..........................C..T..G.. AP012079.1_Luxilus_chrysocephalu ..T.......................C.....C...........T..G........C..............C..T..G.. AP012080.1_Macrhybopsis_gelida_m ..T..C..A..G..G..T........C.....C...........A.................T..T..T.....T..... AP012083.1_Notropis_atherinoides ........T.................C.....C..T.....G..T..G.....G...........T.....C..T..... AP012084.1_Notropis_baileyi_mito ..T.....T..G..............C.....C..T........T........G.................C..T..... AP012087.1_Cyprinella_galactura_ ..T.....T..G.....T........C.....C...........T.....G..G........T..T..T..T..T..T.. AP012088.1_Hybopsis_lineapunctat ..T.............................C........G..T.....G........C.....T.....C..T..T.. AP012090.1_Luxilus_cornutus_mito ..T........G..............C.....C........G..T...........C..C.....T.....C..T..G.. AP012091.1_Lythrurus_ardens_mito ..T.......................C.....C..T.....G..T..G.......................C..T..... AP012092.1_Lythrurus_fumeus_mito ..T.....T..G..............C.....T..T.....G..A..T.....G.....C...........C..T..... AP012093.1_Lythrurus_lirus_mitoc ..T.....T.................C.....C..T.....G..T..G.......................T..T..... AP012094.1_Lythrurus_umbratilis_ ..T.....T.................C.....C..T.....G..T..G.......................C..T..... AP012095.1_Macrhybopsis_meeki_mi ..T...........G..T........C.....C...........A.................T..T..T..C........ AP012097.1_Notropis_bifrenatus_m ..T.....T..G..............C.....C...........T.................T........C..T..... AP012098.1_Pimephales_sp._MCZunc ..T.....T.................C.....C....................G........T........C..T..T.. AP012100.1_Notropis_telescopus_m ..T........G..G...........C.....C.............................T........T.....C.. AP012101.1_Pimephales_notatus_mi ..T.....T.................C.....C.....C..............G........T........C..T..C.. AP012102.1_Pimephales_vigilax_mi ..T.....T..............T..C.....C.......................C........T.....C..T..T.. AP012103.1_Pogonichthys_macrolep ..............G........T..C.....C......................................C..T..... AP012106.1_Richardsonius_balteat .....C..T..G..............C.....C........G..T..........................C..T..... AP012108.1_Notropis_chrosomus_mi ..T.....T..G..............C.....C.....C..G..T..G....................G..C..T..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..T.....T..............T..C.....C.......................C........T.....C..T..T.. Pimephales_vigilax_R1S3_________ ..T.....T..............T..C.....C.......................C........T.....C..T..T.. DQ536429.1_Notropis_stramineus_m .....A..T..G..............C.....C........C.....G..............T........T..T..T.. JX910141.1_Squaliobarbus_curricu ..T.....T..T..................................................T...........T..... KC351187.1_Squaliobarbus_curricu ..T.....T..T..................................................T...........T..... KT278765.1_Pimephales_promelas_m ..T.......................C.....C...........T..T.......................C..T..T.. KT289925.1_Pimephales_promelas_m ..T.....T.................C.....C...........T..T.......................C..T..T.. KT424924.1_Rhinichthys_osculus_m ..T..C..T.....G..T........C.....C........G..T..G....................G..C........ KU200257.1_Chanodichthys_ilishae ..............G.......................C.......................T........C..T..... MF972070.1_Siphateles_bicolor_mo ........T.................C.....C..T........G.......................T..C..T..... MG570407.1_Notropis_chalybaeus_v ..T..C..T.....G...........C.....C..T........T....................T..G..C..T..... MG570408.1_Notropis_bifrenatus_v ..T.....T..G..............C.....C...........T.................T........C..T..... MG570413.1_Notropis_heterolepis_ ..T........G..............C.....C..T...........G.....G..............G..T..T..... MG570416.1_Rhinichthys_obtusus_v ..T..C.....T..G..T........C.....C...........T...........C........T.....C..T..... MG570417.1_Rhinichthys_obtusus_v ..T..C.....T..G..T........C.....C...........T...........C........T.....C..T..... MG570420.1_Pimephales_notatus_vo ..T.....T.................C.....C....................G........T........C..T..T.. MG570443.1_Notropis_hudsonius_is ..T.....T..G...........T........C...........T..............C.....T..T..C........ MG570444.1_Rhinichthys_atratulus ..T..C.....T..G..T........C.....C...........T.....G..G...........T.....C..T..... MG570445.1_Rhinichthys_atratulus ..T..C.....T..G..T........C.....C...........T.....G..G...........T.....C..T..... MG570447.1_Luxilus_cornutus_isol ..T.....T.................C.....C........G..T...........C..C...........C..T..G.. MG570449.1_Luxilus_cornutus_isol ..T.....T.................C.....C........G..T...........C..C...........C..T..G.. MG570450.1_Pimephales_notatus_is ..T.....T.................C.....C....................G........T........C..T..T.. MG570451.1_Notropis_bifrenatus_i ..T.....T..G..............C.....C...........T.................T........C..T..... MG570453.1_Exoglossum_maxillingu ..........................C.....C................................T.....C..T..... MG570454.1_Pimephales_promelas_i ..T.....T.................C.....C...........T..T.......................C..T..T.. MG570455.1_Notropis_atherinoides ........T.................C.....C..T.....G..T..G.....G...........T.....C..T..... MG570456.1_Notropis_atherinoides ........T.................C.....C..T.....G..T..G.....G...........T.....C..T..... MG570457.1_Pimephales_notatus_is ..T.....T.................C.....C....................G........T........C..T..T.. MG570458.1_Pimephales_notatus_is ..T.....T.................C.....C....................G........T........C..T..T.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..T.....T..............T..C.....C...........T.......................G..C..T..G.. MT364325.1_Hybognathus_amarus_mi ..T.....A.................C.....C...........T..C..............T..T.....C..T..T.. MT501368.1_Gila_cypha_isolate_SN ........T..G..............C.....C...........T.......................T..C..T..... MT501369.1_Notropis_simus_pecose ..T..C..T.................C.....C.....C.....T....................T.....C..T..... MT501378.1_Hybognathus_amarus_is ..T.....A.................C.....C...........T..C..............T..T.....C..T..T.. MT501385.1_Notropis_jemezanus_vo ..........................C.....C..T........T..G.....G.....C.....T.....C..T..G.. MT501391.1_Rhinichthys_osculus_i ..T..C..T.....G...........C.....C...........T..G....................G..C..T..... MT667239.1_Rhinichthys_osculus_t ..T..C..T.....G...........C.....C...........T..G....................G..C..T..... MT667242.1_Luxilus_cornutus_vouc ..T.....T.................C.....C........G..T...........C..C...........C..T..G.. MW300340.1_Hybognathus_placitus_ ........T.....G...........C.....C........G..T..........................C..T..C.. MW300341.1_Hybognathus_placitus_ ........T.....G...........C.....C...........T..........................C..T..C.. NC_013763.1_Mylocheilus_caurinus ........T.................C.....C..........................C...........T..T..... NC_033926.1_Opsopoeodus_emiliae_ ........T..C..............C.....C..T........T..........................T..T..T.. NC_037008.1_Notropis_chalybaeus_ ..T..C..T.....G...........C.....C..T........T....................T..G..C..T..... NC_037009.1_Notropis_heterolepis ..T........G..............C.....C..T...........G.....G..............G..T..T..... NC_037010.1_Rhinichthys_obtusus_ ..T..C.....T..G..T........C.....C...........T...........C........T.....C..T..... NC_037014.1_Notropis_hudsonius_i ..T.....T..G...........T........C...........T..............C.....T..T..C........ NC_037015.1_Exoglossum_maxilling ..........................C.....C................................T.....C..T..... NC_054086.1_Ptychocheilus_lucius ........T.................C.....C...........T.......................T..C..T..... NC_054257.1_Gila_cypha_isolate_S ........T..G..............C.....C...........T.......................T..C..T..... NC_054259.1_Gila_nigrescens_isol ........T.................C.....C...........T.......................T..C..T..... NC_054260.1_Hybognathus_amarus_i ..T.....A.................C.....C...........T..C..............T..T.....C..T..T.. NC_054262.1_Notropis_jemezanus_v ..........................C.....C..T........T..G.....G.....C.....T.....C..T..G.. Pimephales_notatus_R2S3_________ ..T.......................C.....C......................................C..T..T.. Pimephales_tenellus_tenellu_R2S1 ........T.................C.....C...........T..G.....G........T........C..T..T.. Pimephales_tenellus_parvice_R2S2 ........T.................C.....C...........T..G.....G........T........C..T..T.. Pimephales_notatus_R1S1_________ ..T.......................C.....C......................................C..T..T.. MG570452.1_Pimephales_promelas_i ..T.....T.................C.....C...........T..T.......................C..T..T.. MG570452.1_Pimephales_promelas_S ..T.....T.................C.....C...........T..T.......................C..T..T.. AB626850.1_Megalobrama_terminali AGTATTTAGCTGACTAGCCACACTTCACGGAGGATCTATCAAATGAGAAACACCCATGTTATGAGCCCTTGGATTCATTT AP010779.1_Mylocheilus_caurinus_ ...G...........T..T..G..C.....G..T.....T..............T..AC..........C.....T.... AP011215.1_Gila_sp._1460_mitocho ...............C..T...........C..C.....T........G..T..T..A...........A..C..T.... AP011263.1_Scardinius_erythropht ...............T.....G.....T..G..C..A..............T..T...C..........G..G..T.... AP011267.1_Algansea_lacustris_mi ...G...........T..T.....C..T.....C..A..T...........T..T..AC....G...T.A..C....... AP011268.1_Yuriria_alta_mitochon ...............C........C.....G..C..A..T...........T..T..AC..........A..C..T.... AP011273.1_Hybognathus_nuchalis_ ...............T........C........C..A..............T..T..AC.......T..G..C..T..C. AP011274.1_Couesius_plumbeus_mit G..G...........T..T.....A.....G..C.....T.....G.....G..T...C....G.....C.......... AP011275.1_Platygobio_gracilis_m ...............T..T..G..C.....G..C..A..T...........T..TT.A..G..G...T.A.....T.... AP011277.1_Erimystax_dissimilis_ ...G...........T..A.....C.....G..T.....T...........T..T..A.........T.A..G..T.... AP011279.1_Pimephales_promelas_m ...............T..T..............C..A...........G..T.....AC..........G.....T..C. AP011280.1_Clinostomus_elongatus ...............T..T................................T..T...C........T.G.....T.... AP012079.1_Luxilus_chrysocephalu ......C........T..T.....G.....G..C..A..............C..T..AC........T.G..C..T.... AP012080.1_Macrhybopsis_gelida_m ...............T..T........T.....C..............G..T..T..A.........T.A..G..T..C. AP012083.1_Notropis_atherinoides ......C........T..T.....C.....G..C..A..............T..T...C.G........A..C....... AP012084.1_Notropis_baileyi_mito ...............T........C........C..A..............T.................G..C..T.... AP012087.1_Cyprinella_galactura_ ...............T..T..G.....T.....C..A........G..G..C..TC.A...........G..C..T..C. AP012088.1_Hybopsis_lineapunctat ...G.....T.....T...........T..G..C..A..............T.....A..G.....TT.A..C..T.... AP012090.1_Luxilus_cornutus_mito ......C........T..T.....C.....G..C..A..............T..T..AC........T.A..C..T.... AP012091.1_Lythrurus_ardens_mito ...............T..T.....C.....G..C..A........G..G..C..T..AC..........A..C..T.... AP012092.1_Lythrurus_fumeus_mito ...G...........T..T.....C.....G..C..A.....G..G.....T..T...C..........A..C..T..C. AP012093.1_Lythrurus_lirus_mitoc ...G...........T..T.....C..T..G..C..A........G.....C..T..AC..........A..C..T.... AP012094.1_Lythrurus_umbratilis_ ...............T..T.....C.....G..C..A........G..C..C..T..AC..........A..C..T.... AP012095.1_Macrhybopsis_meeki_mi ...............T..T.....C..T.....C.................T..T..AC........T.A.....T.... AP012097.1_Notropis_bifrenatus_m ...............T........C..T........A.....G..G.....C..T...C..........G..C..T.... AP012098.1_Pimephales_sp._MCZunc ...............T........C..T.....C..A..T...........T......C..........G..G..T..C. AP012100.1_Notropis_telescopus_m ...............C..T.....C.....G..C..A.....G........C.....AC....G.....G..C..T.... AP012101.1_Pimephales_notatus_mi ...............T........C..T.....C..A..T...........T......C..........G..G..T.... AP012102.1_Pimephales_vigilax_mi ...............T...........T.....C..A..............T..T...C................T.... AP012103.1_Pogonichthys_macrolep ...G...........T..T..G..C.....G..C.....T..................C.G..G.....G..G..T.... AP012106.1_Richardsonius_balteat ......C........T..T..............C.....T...........T..T...C....G...T.A.....T.... AP012108.1_Notropis_chrosomus_mi ...............T........C..T.....C..A..............C......C....G.....A..C..T..C. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...............T...........T.....C..A..............T..T...C................T.... Pimephales_vigilax_R1S3_________ ...............T...........T.....C..A..............T..T...C................T.... DQ536429.1_Notropis_stramineus_m ...G..C........T.................C..A........G.....T..TT.AC....G..T..A..C..T.... JX910141.1_Squaliobarbus_curricu .....................C..C..............T...........T......C..........A..G....... KC351187.1_Squaliobarbus_curricu .....................C..C..............T...........T......C..........A..G....... KT278765.1_Pimephales_promelas_m ...............T..T..............T..A...........G..T.....AC..........G.....T.... KT289925.1_Pimephales_promelas_m ...............T..T..............C..A...........G..T.....AC..........G.....T..C. KT424924.1_Rhinichthys_osculus_m ...G...........C..T.....A.....G..C.....T........G..T..T..A..G..G...T.A..G..T.... KU200257.1_Chanodichthys_ilishae ...G.........T..........C..T.....G.....T..............T..A...........C.....T.... MF972070.1_Siphateles_bicolor_mo ...............T........C.....C..C.....T........G..C..T...C.............C..T.... MG570407.1_Notropis_chalybaeus_v ...............T..T.....C.....G..C..A..T...........C..T..AC..........C..C..T.... MG570408.1_Notropis_bifrenatus_v ...............T........C..T........A.....G..G.....T..T...C..........G..C..T.... MG570413.1_Notropis_heterolepis_ ...............T..T.....C........C..A........G.....T..T..AC.G........G..T..T.... MG570416.1_Rhinichthys_obtusus_v ...............T..T.....A.....G..C........G..G.....T..T..A.....G...T.A..T..T.... MG570417.1_Rhinichthys_obtusus_v ...............T..T.....A.....G..C........G..G.....T..T..A.....G...T.A..T..T.... MG570420.1_Pimephales_notatus_vo ...............T........C..T.....C..A..T...........T......C..........G..G..T..C. MG570443.1_Notropis_hudsonius_is G..G.....T.....T........C..T.....C..A..............T.....AC....G...T.A..C..T.... MG570444.1_Rhinichthys_atratulus ...G...........T..T..G..A.....G..C..C.....G..G.....T..T..A..G..G...T.G..G..T.... MG570445.1_Rhinichthys_atratulus ...G...........T..T..G..A.....G..C..C.....G..G.....T..T..A..G..G...T.G..G..T.... MG570447.1_Luxilus_cornutus_isol ......C........T..T.....C.....G..C..A..............T..T..AC........T.A..C..T.... MG570449.1_Luxilus_cornutus_isol ......C........T..T.....C.....G..C..A..............T..T..AC........T.A..C..T.... MG570450.1_Pimephales_notatus_is ...............T........C..T.....C..A..T...........T......C..........G..G..T..C. MG570451.1_Notropis_bifrenatus_i ...............T........C..T........A.....G..G.....T..T...C..........G..C..T.... MG570453.1_Exoglossum_maxillingu ...G...........T..A.....C.....G..T.....T...........T..T..A.........T.A..G..T.... MG570454.1_Pimephales_promelas_i ...............T..T..............C..A...........G..T.....AC..........G.....T..C. MG570455.1_Notropis_atherinoides ......C........T..T.....C.....G..C..A..............T..T...C.G........A..C....... MG570456.1_Notropis_atherinoides ......C........T..T.....C.....G..C..A..............T..T...C.G........A..C....... MG570457.1_Pimephales_notatus_is ...............T........C..T.....C..A..T...........T......C..........G..G..T..C. MG570458.1_Pimephales_notatus_is ...............T........C..T.....C..A..T...........T......C..........G..G..T..C. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v G........T.....T.....G..C.....G..C..A..T...........T......C....G.....G..C..T.... MT364325.1_Hybognathus_amarus_mi ...G...........C........C........C..A..............T..T...C.......T..G..T..T..C. MT501368.1_Gila_cypha_isolate_SN ............G..T..T..G........C..T.................C..T..A...........A..C..T.... MT501369.1_Notropis_simus_pecose ...............T.....G.....T..C..C..A..T...........T..T...C.G..G.....A.....T.... MT501378.1_Hybognathus_amarus_is ...G...........C........C..T.....C..A..............T..T...C.......T..G..T..T..C. MT501385.1_Notropis_jemezanus_vo ......C........T..T.....C........C..A..............T..T...C.G........A..C....... MT501391.1_Rhinichthys_osculus_i ...G...........C..T.....A.....G..C...........G.....T..T..A.....G...T.A..G..T.... MT667239.1_Rhinichthys_osculus_t ...G...........C........A.....G..C...........G.....T..T..A.....G...T.A..G..T.... MT667242.1_Luxilus_cornutus_vouc ......C........T..T.....C.....G..C..A..............T..T..AC........T.A..C..T.... MW300340.1_Hybognathus_placitus_ G..T...........C........C..T.....C..A...........G..T..T..AC..........A..C..T.... MW300341.1_Hybognathus_placitus_ G..T...........C........C..T.....C..A...........G..T..T..AC..........A..C..T.... NC_013763.1_Mylocheilus_caurinus ...G...........T..T..G..C.....G..T.....T..............T..AC..........C.....T.... NC_033926.1_Opsopoeodus_emiliae_ ...............T..T.....C.....G..T..A..T...........C..T..AC.............G..T.... NC_037008.1_Notropis_chalybaeus_ ...............T..T.....C.....G..C..A..T...........C..T..AC..........C..C..T.... NC_037009.1_Notropis_heterolepis ...............T..T.....C........C..A........G.....T..T..AC.G........G..T..T.... NC_037010.1_Rhinichthys_obtusus_ ...............T..T.....A.....G..C........G..G.....T..T..A.....G...T.A..T..T.... NC_037014.1_Notropis_hudsonius_i G..G.....T.....T........C..T.....C..A..............T.....AC....G...T.A..C..T.... NC_037015.1_Exoglossum_maxilling ...G...........T..A.....C.....G..T.....T...........T..T..A.........T.A..G..T.... NC_054086.1_Ptychocheilus_lucius ...............T..T...........C..T.....T...........C..T..............A..C..T.... NC_054257.1_Gila_cypha_isolate_S ............G..T..T..G........C..T.................C..T..A...........A..C..T.... NC_054259.1_Gila_nigrescens_isol ...............T..T...........C..C.....T...........C..T..A...........A..C..T.... NC_054260.1_Hybognathus_amarus_i ...G...........C........C........C..A..............T..T...C.......T..G..T..T..C. NC_054262.1_Notropis_jemezanus_v ......C........T..T.....C........C..A..............T..T...C.G........A..C....... Pimephales_notatus_R2S3_________ ...............T..T.....C..T..G..C..A..T.....G.....T..T...C.G...........G..T.... Pimephales_tenellus_tenellu_R2S1 ...............T.....G..C..T.....T..A..T..G..G.....T..A..AC..........A.......... Pimephales_tenellus_parvice_R2S2 ...............T.....G..C..T.....T..A.....G..G..G..T..A..AC..........G.......... Pimephales_notatus_R1S1_________ ...............T..T.....C..T..G..C..A..T.....G.....T..T...C.G...........G..T.... MG570452.1_Pimephales_promelas_i ...............T..T..............C..A...........G..T.....AC..........G.....T..C. MG570452.1_Pimephales_promelas_S ...............T..T..............C..A...........G..T.....AC.T........G.....T..C. AB626850.1_Megalobrama_terminali TCCTCTTCACAGTGGGCGGATTAACAGGAATTGTTCTAGCCAATTCATCACTCGACATCGTCCTTCACGACACATACTAC AP010779.1_Mylocheilus_caurinus_ .......T........G..CC.......G.....C.....T..C........T.....T..T.....T............ AP011215.1_Gila_sp._1460_mitocho ....T..T............C...................T........T..G..T..T..T.....T..T..C...... AP011263.1_Scardinius_erythropht ....T..T..C..T..G..GC..........C..AT....T...........T..T..T..T..A............... AP011267.1_Algansea_lacustris_mi .............C..G..GC.G...........C..C..............T.....T.....C..T...........T AP011268.1_Yuriria_alta_mitochon .............T..G...........T........C.....C..G.....T.....T..T..C..T..T..G...... AP011273.1_Hybognathus_nuchalis_ .......T.....C..G....................T..A...........T..T..T..T........T........T AP011274.1_Couesius_plumbeus_mit ....T.....G..A..A...C.............AT....T...........A..T..T..T.................. AP011275.1_Platygobio_gracilis_m .......T.....C..A..............C.....C.....C........T..T..T.....C..T...........T AP011277.1_Erimystax_dissimilis_ ................T...C.............C..T..T...........T..T..T........T...........T AP011279.1_Pimephales_promelas_m .......T.....T..G..........................C........T..T..T..T..C..T..T.....T..T AP011280.1_Clinostomus_elongatus .......T........A...C..........C..C.....T...........T..T..T..T.....T........M..T AP012079.1_Luxilus_chrysocephalu .......T.....T..G...C....G..........................T.....T..T..C..T...........T AP012080.1_Macrhybopsis_gelida_m .......T.....T..G..G.....G...........T..T..C........T..T..T..T.....T..T........T AP012083.1_Notropis_atherinoides .............T..A...C................T..............T..T..T..T..C..T........T..T AP012084.1_Notropis_baileyi_mito .......T.....C..A...C................C..T...........T..T..T..T..C..T..T........T AP012087.1_Cyprinella_galactura_ ....A..T..C..T..G...........G.....G..C..T..C..C.....T..T..T..T..C..............T AP012088.1_Hybopsis_lineapunctat .............C..G...C................C.................T..T.....C..T..T........T AP012090.1_Luxilus_cornutus_mito .......T.....T..A..GC...............................T..T..T..T..C..T...........T AP012091.1_Lythrurus_ardens_mito .............T..G....................C..............T..T..T..T..C...........T..T AP012092.1_Lythrurus_fumeus_mito .............T..G....................T..T..C.....T..T..T..T..T.....T........T..T AP012093.1_Lythrurus_lirus_mitoc .............A..G....................C..............T..T..T..T..C..T........T..T AP012094.1_Lythrurus_umbratilis_ .............T..G...C................C..............T..T..T..T..C...........T..T AP012095.1_Macrhybopsis_meeki_mi ..........G..T..G.....G..............T..T..C........T.....T..T..C..T...........T AP012097.1_Notropis_bifrenatus_m .............T..A...C................T..T...........T..T..T..T..C..T..T.....T..T AP012098.1_Pimephales_sp._MCZunc .......T..G..C..A....................C.....C.....T..T..T..T..T..C..T..T........T AP012100.1_Notropis_telescopus_m ....T..T.....C..A...C.........................G.....T..T.....T..C..T..T........T AP012101.1_Pimephales_notatus_mi .......T.....C..A....................C..............T..T..T..T.....T..T........T AP012102.1_Pimephales_vigilax_mi ....T..T..G..T..A...C................C..............T..T..T..T..C..T........T... AP012103.1_Pogonichthys_macrolep ....T..T........G...C....C..G.....C.................T.....T..T.....T............ AP012106.1_Richardsonius_balteat .......T.....A..A..G..............CT....T........G..T..T..T..T.....T..T........T AP012108.1_Notropis_chrosomus_mi .............T..A..T.................C.................T..T..T..C..T..T........T AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....T..T..G..T..A...C................C..............T..T..T..T..C..T........T... Pimephales_vigilax_R1S3_________ ....T..T..G..T..A...C................C..............T..T..T..T..C..T........T... DQ536429.1_Notropis_stramineus_m ....T.....C..T..A..GC................C........G..T..T..T..T..T..C..T..T........T JX910141.1_Squaliobarbus_curricu ....T...............C......................C.....G........T.................T..T KC351187.1_Squaliobarbus_curricu ....T...............C......................C..............T.................T..T KT278765.1_Pimephales_promelas_m .......T.....C..A....................C.....C........T..T..T.....C..T........T..T KT289925.1_Pimephales_promelas_m .......T.....T..A....................C.....C........T..T..T..T..C..T..T.....T..T KT424924.1_Rhinichthys_osculus_m .......T..G.....A...C.............C..T..T.....C.....T..T..T........T............ KU200257.1_Chanodichthys_ilishae .....C.......A..T...C......................C...........T..T..T.................. MF972070.1_Siphateles_bicolor_mo ....T..T..G.........C...................T........T..T.....T..T.....T..T..C..T... MG570407.1_Notropis_chalybaeus_v ....A..T.....A..A....................C..T..............T..T..T..C..T...........T MG570408.1_Notropis_bifrenatus_v .............T..A...C................T..T...........T..T..T..T..C..T..T.....T..T MG570413.1_Notropis_heterolepis_ ....A........C..G..G.................C..............T..T..T..T..C.....T........T MG570416.1_Rhinichthys_obtusus_v .......T..G.....A...C.............C..C.....C........T.....T..A.....T...........T MG570417.1_Rhinichthys_obtusus_v .......T..G.....A...C.............C..C.....C........T.....T..A.....T...........T MG570420.1_Pimephales_notatus_vo .......T..G..C..A....................C.....C.....T..T..T..T..T..C..T..T........T MG570443.1_Notropis_hudsonius_is .......T.....T..A..T........G.................G.....T..T..TA....C..T..T........T MG570444.1_Rhinichthys_atratulus .......T..G.....G...........G.....C..C..T..C........T.....T..A.....T...........T MG570445.1_Rhinichthys_atratulus .......T..G.....G...........G.....C..C..T..C........T.....T..A.....T...........T MG570447.1_Luxilus_cornutus_isol .......T.....T..A..GC...............................T..T..T..T..C..T...........T MG570449.1_Luxilus_cornutus_isol .......T.....T..A..GC...............................T..T..T..T..C..T...........T MG570450.1_Pimephales_notatus_is .......T..G..C..A....................C.....C.....T..T..T..T..T..C..T..T........T MG570451.1_Notropis_bifrenatus_i .............T..A...C................T..T...........T..T..T..T..C..T..T.....T..T MG570453.1_Exoglossum_maxillingu ................T...C.............C..T..T...........T..T..T........T...........T MG570454.1_Pimephales_promelas_i .......T.....T..A....................C.....C........T..T..T..T..C..T..T.....T..T MG570455.1_Notropis_atherinoides .............T..A...C................T..............T..T..T..T..C..T........T..T MG570456.1_Notropis_atherinoides .............T..A...C................T..............T..T..T..T..C..T........T..T MG570457.1_Pimephales_notatus_is .......T..G..C..A....................C.....C.....T..T..T..T..T..C..T..T........T MG570458.1_Pimephales_notatus_is .......T..G..C..A....................C.....C.....T..T..T..T..T..C..T..T........T MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .............C..A...C.......G........C..............T.....T..T..C..T..T........T MT364325.1_Hybognathus_amarus_mi .......T.....C..A...C................T..A...........T.....T..T..C..T..T........T MT501368.1_Gila_cypha_isolate_SN ....T..T........T...C................G..T........C..T..T..T..T........T..C...... MT501369.1_Notropis_simus_pecose .......T.....A..G..GC................C..T...........T..T..T.....C..T........T..T MT501378.1_Hybognathus_amarus_is .......T.....C..A...C................T..A...........T.....T..T..C..T..T........T MT501385.1_Notropis_jemezanus_vo .............T..A...C................T..............T..T..T..T..A..T........T..T MT501391.1_Rhinichthys_osculus_i ..........G..A..A...C.............C..T..T.....C.....T..T..T........T...........T MT667239.1_Rhinichthys_osculus_t ..........G..A..A...C.............C..T..T.....C.....T..T..T........T...........T MT667242.1_Luxilus_cornutus_vouc .......T.....T..A..GC...............................T..T..T..T..C..T...........T MW300340.1_Hybognathus_placitus_ .............C..G....................C..A...........T..T..T..T..C..T..T........T MW300341.1_Hybognathus_placitus_ .............C..G....................C..G...........T..T..T..T..C..T..T........T NC_013763.1_Mylocheilus_caurinus .......T........G..CC.......G.....C.....T..C........T.....T..T.....T............ NC_033926.1_Opsopoeodus_emiliae_ ....G.....G..T..G....................T..............T..T..T..T..C..T..T.....T..T NC_037008.1_Notropis_chalybaeus_ ....A..T.....A..A....................C..T..............T..T..T..C..T...........T NC_037009.1_Notropis_heterolepis ....A........C..G..G.................C..............T..T..T..T..C.....T........T NC_037010.1_Rhinichthys_obtusus_ .......T..G.....A...C.............C..C.....C........T.....T..A.....T...........T NC_037014.1_Notropis_hudsonius_i .......T.....T..A..T........G.................G.....T..T..TA....C..T..T........T NC_037015.1_Exoglossum_maxilling ................T...C.............C..T..T...........T..T..T........T...........T NC_054086.1_Ptychocheilus_lucius ....T..T..G.........C...................T........T..T..T..T..T........T..C...... NC_054257.1_Gila_cypha_isolate_S ....T..T........T...C................G..T........C..T..T..T..T........T..C...... NC_054259.1_Gila_nigrescens_isol ....T..T........T...C.......G...........T........T..T..T..T..T.....T..T..T...... NC_054260.1_Hybognathus_amarus_i .......T.....C..A...C................T..A...........T.....T..T..C..T..T........T NC_054262.1_Notropis_jemezanus_v .............T..A...C................T..............T..T..T..T..A..T........T..T Pimephales_notatus_R2S3_________ .......T.....T..A....................C..............T.....T..T..C..T..T........T Pimephales_tenellus_tenellu_R2S1 .T.....T.....T..G...C.......T........T..T...........T.....T..T.....T..T..G.....T Pimephales_tenellus_parvice_R2S2 .T.....T.....T..A...C.......T........C..T...........T..T..T..T.....T..T..G.....T Pimephales_notatus_R1S1_________ .......T.....T..A....................C..............T.....T..T..C..T..T........T MG570452.1_Pimephales_promelas_i .......T.....T..A....................C.....C........T..T..T..T..C..T..T.....T..T MG570452.1_Pimephales_promelas_S .......T.....T..G.....G....................C........T..T..T..T..C..T..T.....T..T AB626850.1_Megalobrama_terminali GTAGTCGCACACTTCCACTATGTACTATCAATGGGTGCTGTATTTGCCATTATGGCAGCCTTTGTTCACTGATTCCCTCT AP010779.1_Mylocheilus_caurinus_ .....A..C.......................A..A..C..............A.......................G.. AP011215.1_Gila_sp._1460_mitocho ..G..T..T........T..C...T.......A..C..............C...........C.....T........AT. AP011263.1_Scardinius_erythropht .....T..C.................G...........C.....C.....C........T..C..............A.. AP011267.1_Algansea_lacustris_mi ..T..T..C...............T.......A..G...........T........G..A.................G.. AP011268.1_Yuriria_alta_mitochon ..T..T..C.......................A..G...........T........G..A.................... AP011273.1_Hybognathus_nuchalis_ ..C..T..C........T..............A..G.....G........C..A.....A.................A.. AP011274.1_Couesius_plumbeus_mit .....T..C.................C.....A..G..............C..A.......................A.. AP011275.1_Platygobio_gracilis_m ..C..T..C...........C...........A..G.....G.....T........G..A..C..............A.. AP011277.1_Erimystax_dissimilis_ .....T..C........T......T.......A..A...........T.....A........C..............AT. AP011279.1_Pimephales_promelas_m ..T..T..C..T.....T......T.......A..G.....G.....T.....A.....A.....A...........AT. AP011280.1_Clinostomus_elongatus ..C.....C..........................G..C..............A.......................GT. AP012079.1_Luxilus_chrysocephalu ..T..T..C...........C...........A..G.....G.....T.....A.....A.................A.. AP012080.1_Macrhybopsis_gelida_m ..C..T..C..T............T..........G...........T..C..A.....A........T........G.. AP012083.1_Notropis_atherinoides ..C..T..C...............T.......A..A..G..G.....T..C........A........T........A.. AP012084.1_Notropis_baileyi_mito ..T..T..C.................G.....A..G...........T.....A.....A...........G.....G.. AP012087.1_Cyprinella_galactura_ ..C..T..C........T......T.......A..G.....C..C..T.....A.....A.................AT. AP012088.1_Hybopsis_lineapunctat ..C..T..C...............T.......A..A.....G.....T..C........A...........G..T..A.. AP012090.1_Luxilus_cornutus_mito ..T..T..C...............T.......A..G...........T.....A.....A.................A.. AP012091.1_Lythrurus_ardens_mito ..T.....C..T.................G.....G...........T........G..A.................A.. AP012092.1_Lythrurus_fumeus_mito ..T..T..C...........C...T..........G..C........T...........A.................A.. AP012093.1_Lythrurus_lirus_mitoc ..T.....C.......................A..G...........T.....A..G..A.................A.. AP012094.1_Lythrurus_umbratilis_ ..T.....C..T.................G.....G...........T........G..A.....C...........A.. AP012095.1_Macrhybopsis_meeki_mi ..T..T..C..T............T.......A..G...........T.....A.....A........T........G.. AP012097.1_Notropis_bifrenatus_m ..T..T..C..............T...........G...........T...........A.................C.. AP012098.1_Pimephales_sp._MCZunc ..C..T..C........T..C.....C.....A..C...........T.....A.....A.................A.. AP012100.1_Notropis_telescopus_m ..C..T..C..T.......................G...........T..C..A.....A.................A.. AP012101.1_Pimephales_notatus_mi ..C..T..C........T..C.....G........C...........T.....A.....A.................A.. AP012102.1_Pimephales_vigilax_mi .....T..C..T...........TT.......A..C...........T..C..A.....G.................A.. AP012103.1_Pogonichthys_macrolep .....A..C........T......T.......A..G..C...........C..A..G.....C........G.....A.. AP012106.1_Richardsonius_balteat ........C...............T.......A..G........C........A.......................C.. AP012108.1_Notropis_chrosomus_mi ..T..T..C..T.....T..............A..A.....C.....T.....A.....A.................A.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .....T..C..T...........TT.......A..C...........T..C..A.....G.................A.. Pimephales_vigilax_R1S3_________ .....T..C..T...........TT.......A..C...........T..C..A.....G.................A.. DQ536429.1_Notropis_stramineus_m ..T..T..C..........................G.....G.....T.....A.....A..C..............A.. JX910141.1_Squaliobarbus_curricu .....T....................G.....A.....C..G.....T..C..A...........C...........C.. KC351187.1_Squaliobarbus_curricu .....T....................G.....A.....C..G.....T..C..A...........C...........C.. KT278765.1_Pimephales_promelas_m ..T..T..C..T....................A..G.....G...........A.....A.....A...........A.. KT289925.1_Pimephales_promelas_m ..T..T..C..T............T.......A..G.....G...........A.....A.....A...........A.. KT424924.1_Rhinichthys_osculus_m .....T..C...............T.......A..G..............C..A........C.....T..G.....GT. KU200257.1_Chanodichthys_ilishae .....T..............C...T.G.....A.................C........T..C..............C.. MF972070.1_Siphateles_bicolor_mo .....T..T..T.....T......T.......A..C..............C..A.....T..C..............A.. MG570407.1_Notropis_chalybaeus_v ..T..T..C.......................A..G..C........T..C.....G..A........T........A.. MG570408.1_Notropis_bifrenatus_v ..T..T..C..............T...........G...........T...........A.................C.. MG570413.1_Notropis_heterolepis_ ..T..T..C.......................A..G...........T..C..A.....A.................A.. MG570416.1_Rhinichthys_obtusus_v ..C..T..T...............T.......A..G...........T..C..A........C........G.....AT. MG570417.1_Rhinichthys_obtusus_v ..C..T..T...............T.......A..G...........T..C..A........C........G.....AT. MG570420.1_Pimephales_notatus_vo ..C..T..C........T..C.....C.....A..C...........T.....A.....A.................A.. MG570443.1_Notropis_hudsonius_is ..T..T..C..............C........A..G...........T.....A..G..A.................A.. MG570444.1_Rhinichthys_atratulus ..C..T..T..........................A..............C..A........C........G.....A.. MG570445.1_Rhinichthys_atratulus ..C..T..T..........................A..............C..A........C........G.....A.. MG570447.1_Luxilus_cornutus_isol ..T..T..C...............T.......A..G...........T.....A.....A.................A.. MG570449.1_Luxilus_cornutus_isol ..T..T..C...............T.......A..G...........T.....A.....A.................A.. MG570450.1_Pimephales_notatus_is ..C..T..C........T..C.....C.....A..C...........T.....A.....A.................A.. MG570451.1_Notropis_bifrenatus_i ..T..T..C..............T...........G...........T...........A.................C.. MG570453.1_Exoglossum_maxillingu .....T..C........T......T.......A..A...........T.....A........C..............AT. MG570454.1_Pimephales_promelas_i ..T..T..C..T............T.......A..G.....G...........A.....A.....A...........A.. MG570455.1_Notropis_atherinoides ..C..T..C...............T.......A..A..G..G.....T..C........A..C.....T........A.. MG570456.1_Notropis_atherinoides ..C..T..C...............T.......A..A..G..G.....T..C........A........T........A.. MG570457.1_Pimephales_notatus_is ..C..T..C........T..C.....C.....A..C...........T.....A.....A.................A.. MG570458.1_Pimephales_notatus_is ..C..T..C........T..C.....C.....A..C...........T.....A.....A.................A.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..T..T..C..T............T..........G.....T........C........A.................G.. MT364325.1_Hybognathus_amarus_mi .....T..C..........................A.....G...........A.....A.................A.. MT501368.1_Gila_cypha_isolate_SN .....T..T........T..C.....C.....A..C........C.....C...........C..............A.. MT501369.1_Notropis_simus_pecose ..T..T..C........T.....T..G.....A..G.....G.....T..C........A.................A.. MT501378.1_Hybognathus_amarus_is .....T..C...............T..........A.....G...........A.....A.................A.. MT501385.1_Notropis_jemezanus_vo ..C..T..C........T..............A..A.....G.....T..C........A........T.....T..C.. MT501391.1_Rhinichthys_osculus_i ..G..T..C.................G........A........C.....C..A........C..............AT. MT667239.1_Rhinichthys_osculus_t ..G..T..C.................C........A........C.....C..A........C..............AT. MT667242.1_Luxilus_cornutus_vouc ..T..T..C...............T.......A..G...........T.....A.....A.................A.. MW300340.1_Hybognathus_placitus_ ..C..T..C........T.....C.....T.....G..............C..A.....A.................A.. MW300341.1_Hybognathus_placitus_ ..C..T..C........T.....C.....T.....G..............C..A.....A.................A.. NC_013763.1_Mylocheilus_caurinus .....A..C.......................A..A..C..............A.......................G.. NC_033926.1_Opsopoeodus_emiliae_ ..T..T..C..T...........TT.......A..G..C..G.....T...........A.................AT. NC_037008.1_Notropis_chalybaeus_ ..T..T..C.......................A..G..C........T..C.....G..A........T........A.. NC_037009.1_Notropis_heterolepis ..T..T..C.......................A..G...........T..C..A.....A.................A.. NC_037010.1_Rhinichthys_obtusus_ ..C..T..T...............T.......A..G...........T..C..A........C........G.....AT. NC_037014.1_Notropis_hudsonius_i ..T..T..C..............C........A..G...........T.....A..G..A.................A.. NC_037015.1_Exoglossum_maxilling .....T..C........T......T.......A..A...........T.....A........C..............AT. NC_054086.1_Ptychocheilus_lucius .....T..C..T.....T......T.......A..C..............C...........C..............A.. NC_054257.1_Gila_cypha_isolate_S .....T..T........T..C.....C.....A..C........C.....C...........C..............A.. NC_054259.1_Gila_nigrescens_isol .....T..T...........C...........A..C..............C...........C..............A.. NC_054260.1_Hybognathus_amarus_i .....T..C..........................A.....G...........A.....A.................A.. NC_054262.1_Notropis_jemezanus_v ..C..T..C........T........G.....A..A.....G.....T..C........A........T.....T..C.. Pimephales_notatus_R2S3_________ ..C..T..C...........C.....G..G.................T...........A.................G.. Pimephales_tenellus_tenellu_R2S1 ..T..T..C..T....................A..C..C..C.....T..C..A..G..A.................A.. Pimephales_tenellus_parvice_R2S2 ..T..T..C..T............T.......A..C..C..C.....T.....A..G..A.................A.. Pimephales_notatus_R1S1_________ ..C..T..C...........C.....G..G.................T...........A.................G.. MG570452.1_Pimephales_promelas_i ..T..T..C..T............T.......A..G.....G...........A.....A.....A...........A.. MG570452.1_Pimephales_promelas_S ..T..T..C..T.....T......T.......A..G.....G.....T.....A.....A.....A...........AT. AB626850.1_Megalobrama_terminali ATTTACAGGATATACCTTAAATGACACCTGAACAAAAATCCACTTCGGAGTAATATTCATCGGTGTCAACCTTACATTCT AP010779.1_Mylocheilus_caurinus_ ....T......................T........G.....T..T..T........T..T.....A..T.......... AP011215.1_Gila_sp._1460_mitocho ....T...........C.......T..T....................G........T..T.....T.....C.....T. AP011263.1_Scardinius_erythropht C..CT....C..............T..............T.....T...A.C..G..T..T..C..A........G.... AP011267.1_Algansea_lacustris_mi ....T.......C...C..........T.................T.CT........T..T.....A.....C..G.... AP011268.1_Yuriria_alta_mitochon ....T...........C.T.....T..T.................T.CT........T..T................... AP011273.1_Hybognathus_nuchalis_ ...CT....G..C..TC............................T.CT.....G..T........T.....C.....T. AP011274.1_Couesius_plumbeus_mit ....T....C..............T..T.............................T..T.....A...........T. AP011275.1_Platygobio_gracilis_m ....T.......C...C.........................T..T.CT........T..T.....T............. AP011277.1_Erimystax_dissimilis_ ....T.......C..............T.....G........T..T.CT........T.....C..T............. AP011279.1_Pimephales_promelas_m ....T.......C...C.......T..............T.....T.CT.....G..T........T.....C....... AP011280.1_Clinostomus_elongatus ....T.......C........C.....T.................T.CC........T..T.....T........G.... AP012079.1_Luxilus_chrysocephalu ....T....G......C.......T..T...................CT...........T...........C....... AP012080.1_Macrhybopsis_gelida_m ....T....C.....T...........G...........T..T....CT........T..T.....T............. AP012083.1_Notropis_atherinoides ...CT.......C...C.......T..T.................T.CT.....G...........T.....C..G.... AP012084.1_Notropis_baileyi_mito ...CT....G......C.....A.T..T...........T.....T.CT........T..T..A..T.....C..C.... AP012087.1_Cyprinella_galactura_ ....T....G......C.......T..T...........T..T..T.CT........T..T.....T.....C..G.... AP012088.1_Hybopsis_lineapunctat ....T.......C..TC.T.....T..T.................T.CT........T..T.....T.....C..G.... AP012090.1_Luxilus_cornutus_mito ....T....G......C.......T..T.................T.CT..G........T.....T.....C....... AP012091.1_Lythrurus_ardens_mito G..CT...........C.......T..T.....G...........T.CC.....G.....T.....T.....C..G.... AP012092.1_Lythrurus_fumeus_mito ....T....G......C.......T..T.................T.CT........T........T.....C..C.... AP012093.1_Lythrurus_lirus_mitoc G..CT...................T..T.................T.CC.....G.....T.....T.....C..G.... AP012094.1_Lythrurus_umbratilis_ G..CT.......C...C.......T..T.....G...........T.CC.....G.....T.....T.....C..G.... AP012095.1_Macrhybopsis_meeki_mi ....T....T.....T........T..T...........T..T..T.CT........T..T.....A............. AP012097.1_Notropis_bifrenatus_m ....T....G.....TC.......T..G.................T.CT........T..T.....T.....C..G.... AP012098.1_Pimephales_sp._MCZunc ....T...........C..........T.................T.CT.....G..T..T.....A.....C....... AP012100.1_Notropis_telescopus_m ...CT.......C...C.G........T.................T.CT..G.....T..T..A..T.....C..G.... AP012101.1_Pimephales_notatus_mi ....T.......C...C..........T.................T.CT.....G..T..T.....A.....C....... AP012102.1_Pimephales_vigilax_mi ...CT....T......C..........T...........T.....T.CT........T..T.....A..T..C.....T. AP012103.1_Pogonichthys_macrolep ....T...................T..T........G........T..C.....G..T..T.....T..T.......... AP012106.1_Richardsonius_balteat ....T......................T.................T.CT........T..T.....T............. AP012108.1_Notropis_chrosomus_mi ...CT....G..C..TC.......T..T...........T.....T.CT........T..T.....T.....C..G.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...CT....T......C..........T...........T.....T.CT........T..T.....A..T..C.....T. Pimephales_vigilax_R1S3_________ ...CT....T......C..........T...........T.....T.CT........T..T.....A..T..C.....T. DQ536429.1_Notropis_stramineus_m ...CT..........TC.G........T.................T.CT..G.....T..T.....A.....C....... JX910141.1_Squaliobarbus_curricu ...............TC....C....................T..T...........T..T.....A............. KC351187.1_Squaliobarbus_curricu ............C..TC....C....................T..T...........T..T.....A............. KT278765.1_Pimephales_promelas_m ....T...........C.......T..............T.....T.CT........T..T.....T.....C....... KT289925.1_Pimephales_promelas_m ....T.......C...C.......T..............T.....T.CT.....G..T........T.....C....... KT424924.1_Rhinichthys_osculus_m ....T...........C..........T.....G.....T.....T.CT........T........T............. KU200257.1_Chanodichthys_ilishae .........G..C..T.......................T....................T........T.......... MF972070.1_Siphateles_bicolor_mo ....T....G..C...........T..T....................G........T..T.....T.....C..G..T. MG570407.1_Notropis_chalybaeus_v ....T...........C.......T..T.................T.CT........T..T.....T.....C..G.... MG570408.1_Notropis_bifrenatus_v ....T....G.....TC.......T..G.................T.CT........T..T.....T.....C..G.... MG570413.1_Notropis_heterolepis_ ....T.......C...C.G............................CT...........T.....T..T..C....... MG570416.1_Rhinichthys_obtusus_v ....T....C..C..............T.................T.CT.....G..T..T.....T............. MG570417.1_Rhinichthys_obtusus_v ....T....C..C..............T.................T.CT.....G..T..T.....T............. MG570420.1_Pimephales_notatus_vo ....T...........C..........T.................T.CT.....G..T..T.....A.....C....... MG570443.1_Notropis_hudsonius_is ....T...........C.......T...........G.....T..T.CT........T..T.....T........G.... MG570444.1_Rhinichthys_atratulus ....T....C.................T.................T.CT........T........T............. MG570445.1_Rhinichthys_atratulus ....T....C.................T...........T.....T.CT........T........T............. MG570447.1_Luxilus_cornutus_isol ....T....G......C.......T..T.................T.CT..G........T.....T.....C....... MG570449.1_Luxilus_cornutus_isol ....T....G......C.......T..T.................T.CT..G........T.....T.....C....... MG570450.1_Pimephales_notatus_is ....T...........C..........T.................T.CT.....G..T..T.....A.....C....... MG570451.1_Notropis_bifrenatus_i ....T....G.....TC.......T..G.................T.CT........T..T.....T.....C..G.... MG570453.1_Exoglossum_maxillingu ....T.......C..............T.....G........T..T.CT........T.....C..T............. MG570454.1_Pimephales_promelas_i ....T.......C...C.......T..............T.....T.CT.....G..T........T.....C....... MG570455.1_Notropis_atherinoides ...CT.......C...C.......T..T.................T.CT.....G...........T.....C..G.... MG570456.1_Notropis_atherinoides ...CT...........C.......T..T.................T.CT.....G...........T.....C..G.... MG570457.1_Pimephales_notatus_is ....T...........C..........T.................T.CT.....G..T..T.....A.....C....... MG570458.1_Pimephales_notatus_is ....T...........C..........T.................T.CT.....G..T..T.....A.....C....... MK421554.1_Parabramis_pekinensis ................C............................................................... MT333789.1_Notropis_lutipinnis_v ...CT....G..C..TC.......T..T...........T.....T.CT........T........T.....C....... MT364325.1_Hybognathus_amarus_mi ...CT..........TC............................T.CT.....G..T..T.....T.....C....... MT501368.1_Gila_cypha_isolate_SN ....T...........C.......T..T....................G...........T.....T.....C.....T. MT501369.1_Notropis_simus_pecose ...CT..........GC.T.....T..T.................T.CT...........T.....T.....C....... MT501378.1_Hybognathus_amarus_is ...CT..........TC............................T.CT.....G..T..T.....T.....C....... MT501385.1_Notropis_jemezanus_vo ...CT.......C...C.......T..T.....G...........T.CT..T..G..T..T.....T.....C....... MT501391.1_Rhinichthys_osculus_i ....T...........C..........T.................T.CT.....G..T........T...........T. MT667239.1_Rhinichthys_osculus_t ....T...........C..........T.................T.CT.....G..T........T...........T. MT667242.1_Luxilus_cornutus_vouc ....T....G......C.......T..T.................T.CT..G........T.....T.....C....... MW300340.1_Hybognathus_placitus_ ...CT....G.....TC............................T.CT..G..G..T..T.....T.....C....... MW300341.1_Hybognathus_placitus_ ...CT...........C............................T.CT..G..G..T..T.....T.....C....... NC_013763.1_Mylocheilus_caurinus ....T......................T........G.....T..T..T........T..T.....A..T.......... NC_033926.1_Opsopoeodus_emiliae_ ....T.......C...C.......T..T.....T...........TATG..G..G..T..T................... NC_037008.1_Notropis_chalybaeus_ ....T...........C.......T..T.................T.CT........T..T.....T.....C..G.... NC_037009.1_Notropis_heterolepis ....T.......C...C.G............................CT...........T.....T..T..C....... NC_037010.1_Rhinichthys_obtusus_ ....T....C..C..............T.................T.CT.....G..T..T.....T............. NC_037014.1_Notropis_hudsonius_i ....T...........C.......T...........G.....T..T.CT........T..T.....T........G.... NC_037015.1_Exoglossum_maxilling ....T.......C..............T.....G........T..T.CT........T.....C..T............. NC_054086.1_Ptychocheilus_lucius ....T.......C...C....C..T..T....................G........T..T.....T..T..C....... NC_054257.1_Gila_cypha_isolate_S ....T...........C.......T..T....................G...........T.....T.....C.....T. NC_054259.1_Gila_nigrescens_isol ....T...........C.......T..T........G...........G........T..T.....T.....C.....T. NC_054260.1_Hybognathus_amarus_i ...CT..........TC............................T.CT.....G..T..T.....T.....C....... NC_054262.1_Notropis_jemezanus_v ...CT.......C...........T..T.....G...........T.CT..T..G..T..T.....T.....C....... Pimephales_notatus_R2S3_________ ....T.......C........C.....T.................T.CT.....G..T..T.....A.....C....... Pimephales_tenellus_tenellu_R2S1 ....T...........C.......T..T.................T.CT.....G..T..T.....A..T..C.....T. Pimephales_tenellus_parvice_R2S2 ....T...........C.......T..G.................T.CT.....G..T..T.....A..T..C.....T. Pimephales_notatus_R1S1_________ ....T.......C........C.....T.................T.CT.....G..T..T.....A.....C....... MG570452.1_Pimephales_promelas_i ....T.......C..TC.......T..............T.....T.CT.....G..T........T.....C....... MG570452.1_Pimephales_promelas_S ....T.......C...C.......T..............T.....T.CT.....G..T........T.....C....... AB626850.1_Megalobrama_terminali TCCCACAACACTTCCTAGGCCTAGCAGGAATGCCACGACGATACTCTGACTACCCAGATGCCTACGCTCTGTGAAATACA AP010779.1_Mylocheilus_caurinus_ ...............................A........G..T.....T........C.....T..C............ AP011215.1_Gila_sp._1460_mitocho .....................................G...........T..T.....C.....T..C..A......... AP011263.1_Scardinius_erythropht ..........T...........G....................T.....T........C..T..T..C..A......... AP011267.1_Algansea_lacustris_mi ..........T...T....TT..........A........G..T....................T..C..C......... AP011268.1_Yuriria_alta_mitochon ....G.....T........TT..........A...........T.....T..T........T.....C..A......... AP011273.1_Hybognathus_nuchalis_ ...................T........G..A.................T...........T........C......... AP011274.1_Couesius_plumbeus_mit ....C................................G....................C.....T.....C......... AP011275.1_Platygobio_gracilis_m ....G..........................A........G..T.....T........C..T.....C..A......... AP011277.1_Erimystax_dissimilis_ .T........T.........T.G........A..G..............T........C.....T..C..A......... AP011279.1_Pimephales_promelas_m ..........T.........T.......G..A........G........T.................C..A.....C... AP011280.1_Clinostomus_elongatus ................G..T...........A........G..T..............C.....T..C..A......... AP012079.1_Luxilus_chrysocephalu ..........T........T....................G..T.................T..T..CT.A.....C... AP012080.1_Macrhybopsis_gelida_m .T........T....................A...........T.....T...........T.....C............ AP012083.1_Notropis_atherinoides .......G..T........TT............................T...........T.....C........C... AP012084.1_Notropis_baileyi_mito ...................TT.G........A...........T.....T...........T........A......... AP012087.1_Cyprinella_galactura_ .T........T..........................C..G..T.................T.....C..A......... AP012088.1_Hybopsis_lineapunctat ....................T..........A.................T...........T........T.....C..T AP012090.1_Luxilus_cornutus_mito ...................TT...................G..T.....T...........T........A.....C... AP012091.1_Lythrurus_ardens_mito ..............T.....T..........A........G..T.....T.....C.....A..T.....A.....C..C AP012092.1_Lythrurus_fumeus_mito ....................T..........A........G........T.....T........T...T.A.....C... AP012093.1_Lythrurus_lirus_mitoc ................G..............A........G..T.....T.....C.....A..T..C..A..G..C..C AP012094.1_Lythrurus_umbratilis_ ..............T....TT..........A........G..T.....T.....C.....A..T...T.A.....C..C AP012095.1_Macrhybopsis_meeki_mi .T........T.........T..........A........G..T.....T..T........T.....C..A.....C... AP012097.1_Notropis_bifrenatus_m ...............................A...........T.....T...........T.....C..A.....C... AP012098.1_Pimephales_sp._MCZunc ..........T........TT..........A........G........T..............T...T.A......... AP012100.1_Notropis_telescopus_m ........................................G...........T........T......T.A......... AP012101.1_Pimephales_notatus_mi ..........T........TT..........A........G........T..............T...T.A......... AP012102.1_Pimephales_vigilax_mi ...................TT..........A.....G..G..T.....T...........T.....C............ AP012103.1_Pogonichthys_macrolep .......G....................G..A...........T..............C.....T..C..A......... AP012106.1_Richardsonius_balteat ..........T........A...........A........G..T..............C.....T..C..A......... AP012108.1_Notropis_chrosomus_mi ...............................A...........T..C..T..T........T........A......... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...................TT..........A.....G..G..T.....T...........T.....C............ Pimephales_vigilax_R1S3_________ ...................TT..........A.....G..G..T.....T...........T.....C............ DQ536429.1_Notropis_stramineus_m ..........T........T....................G........T..T........T...........G.....G JX910141.1_Squaliobarbus_curricu .......G..........................G...........C...........C........C............ KC351187.1_Squaliobarbus_curricu .......G..........................G...........C...........C........C............ KT278765.1_Pimephales_promelas_m ..........T..T......T.......G..A........G........T.................C..A......... KT289925.1_Pimephales_promelas_m ..........T.........T.......G..A........G........T.................C..A.....C... KT424924.1_Rhinichthys_osculus_m ..........T.....G...........C...........G..T..............C..T.....C..A......... KU200257.1_Chanodichthys_ilishae ...................T..G..........................................A.C............ MF972070.1_Siphateles_bicolor_mo ..........T........T...........A...........T..G...........C.....T..C..A........G MG570407.1_Notropis_chalybaeus_v ...................TT.......G..A.............................T..T.....A......... MG570408.1_Notropis_bifrenatus_v ...............................A...........T.....T...........T.....C..A.....C... MG570413.1_Notropis_heterolepis_ ...............................A........G..T.....T...........T........A.....C... MG570416.1_Rhinichthys_obtusus_v ..........T..T.....T........T...........G..T..............C..T..T..C..A......... MG570417.1_Rhinichthys_obtusus_v ..........T..T.....T........T...........G..T..............C..T..T..C..A......... MG570420.1_Pimephales_notatus_vo ..........T........TT..........A........G........T..............T...T.A......... MG570443.1_Notropis_hudsonius_is ..........T...........G........A........G.................C.....T..C..A.....C... MG570444.1_Rhinichthys_atratulus ..........T..T..............T...........G..T.....T........C..T..T..C............ MG570445.1_Rhinichthys_atratulus ..........T..T..............T...........G..T.....T........C..T..T..C............ MG570447.1_Luxilus_cornutus_isol ...................TT...................G..T.....T...........T.....C..A.....C... MG570449.1_Luxilus_cornutus_isol ...................TT...................G..T.....T...........T.....C..A.....C... MG570450.1_Pimephales_notatus_is ..........T........TT..........A........G........T..............T...T.A......... MG570451.1_Notropis_bifrenatus_i ...............................A...........T.....T...........T.....C..A.....C... MG570453.1_Exoglossum_maxillingu .T........T.........T.G........A..G..............T........C.....T..C..A......... MG570454.1_Pimephales_promelas_i ..........T.........T.......G..A........G........T..T..............C..A.....C... MG570455.1_Notropis_atherinoides .......G..T........TT............................T...........T.....C........C... MG570456.1_Notropis_atherinoides .......G..T........TT............................T...........T.....C........C... MG570457.1_Pimephales_notatus_is ..........T........TT..........A........G........T..............T...T.A......... MG570458.1_Pimephales_notatus_is ..........T........TT..........A........G........T..............T...T.A......... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ....T..........................A........T..T.....T...........T.....C..A..G...... MT364325.1_Hybognathus_amarus_mi ...............................A.................T...........T........C......... MT501368.1_Gila_cypha_isolate_SN ....C.....T..........................G....................C.....T..C..A.....C... MT501369.1_Notropis_simus_pecose ...................TT............................T..............T.....A......... MT501378.1_Hybognathus_amarus_is ...............................A.................T...........T........C......... MT501385.1_Notropis_jemezanus_vo ..........T........TT............................T...........T.....C........C... MT501391.1_Rhinichthys_osculus_i ..........T.................C..A...........T..............C..T.....C............ MT667239.1_Rhinichthys_osculus_t ..........T.................C..A........G..T..............C..T.....C............ MT667242.1_Luxilus_cornutus_vouc ...................TT...................G..T.....T...........T.....C..A.....C... MW300340.1_Hybognathus_placitus_ .......G............T..........A...........T................................C... MW300341.1_Hybognathus_placitus_ .......G............T..........A...........T.................................... NC_013763.1_Mylocheilus_caurinus ...............................A........G..T.....T........C.....T..C............ NC_033926.1_Opsopoeodus_emiliae_ ......................T.....C........G.....T.....T...........T...A.C............ NC_037008.1_Notropis_chalybaeus_ ...................TT.......G..A.............................T..T.....A......... NC_037009.1_Notropis_heterolepis ...............................A........G..T.....T...........T........A.....C... NC_037010.1_Rhinichthys_obtusus_ ..........T..T.....T........T...........G..T..............C..T..T..C..A......... NC_037014.1_Notropis_hudsonius_i ..........T...........G........A........G.................C.....T..C..A.....C... NC_037015.1_Exoglossum_maxilling .T........T.........T.G........A..G..............T........C.....T..C..A......... NC_054086.1_Ptychocheilus_lucius ....G................................G.....T..............C.....T..C..A.....C... NC_054257.1_Gila_cypha_isolate_S ....C.....T..........................G....................C.....T..C..A.....C... NC_054259.1_Gila_nigrescens_isol ....G..........................A.....G....................C.....T..C............ NC_054260.1_Hybognathus_amarus_i ...............................A.................T...........T........C......... NC_054262.1_Notropis_jemezanus_v ..........T........TT............................T...........T.....C........C... Pimephales_notatus_R2S3_________ ...................TT..........A........G....................T..T...T.A......... Pimephales_tenellus_tenellu_R2S1 ....G.....T.................G...........G........T...........T........A......... Pimephales_tenellus_parvice_R2S2 ....G.....T.................G..A........G........T...........T.....C............ Pimephales_notatus_R1S1_________ ...................TT..........A........G....................T..T...T.A......... MG570452.1_Pimephales_promelas_i ..........T.........T.......G..A........G........T..T..............C..A.....C... MG570452.1_Pimephales_promelas_S ..........T.........T..........A........G........T.................C..A.....C... AB626850.1_Megalobrama_terminali GTGTCATCCATCGGGTCACTTATCTCCCTAGTAGCAGTAATTATGTTCCTATTTATTCTATGAGAAGCCTTCGCCGCTAA AP010779.1_Mylocheilus_caurinus_ ........T..T..C.....C.....A.................A........C.....C.................C.. AP011215.1_Gila_sp._1460_mitocho ..C..G..T..T..A..............G..G..............T..G......T.......G.....T..T..C.. AP011263.1_Scardinius_erythropht ..A.....T..T........C.....AT.G..G........C..A...........C..C..............T..C.. AP011267.1_Algansea_lacustris_mi ..A...........C.....C.....A........G............T.......C....................C.. AP011268.1_Yuriria_alta_mitochon ...........T..C...........A..C........C.....A...T....C...T.............T.....C.. AP011273.1_Hybognathus_nuchalis_ ........T.....C.....CG....AT.......G............T........T...................C.. AP011274.1_Couesius_plumbeus_mit ..A.....T..T........C..T..A.....G...............T.......C..C..G..............C.. AP011275.1_Platygobio_gracilis_m ..A........T..C.....CG....A..G.....G........A.....C.....CT...................C.. AP011277.1_Erimystax_dissimilis_ ..A.....T..T..C.....A.....AT..........G.....A...........C..C.................C.. AP011279.1_Pimephales_promelas_m ..A.....T..T..C.....CG....A........G..G.........T.......C..............T.....C.. AP011280.1_Clinostomus_elongatus ...........T..C...........G..T.............................C.................... AP012079.1_Luxilus_chrysocephalu ..A........T..C...........AT.......G............T........T.............T........ AP012080.1_Macrhybopsis_gelida_m ..A.....T..T..C.....CG....AT....G...........A..............T.....G.............. AP012083.1_Notropis_atherinoides ..A........T..C.....C.....A..G.....G............T........T.............T..G..C.. AP012084.1_Notropis_baileyi_mito ..A..G.....T..C.....CG....A........G..T.........T........T..........T..T.....C.. AP012087.1_Cyprinella_galactura_ ..A........T..C......G....AT.......G.................C..CT.............T.....C.. AP012088.1_Hybopsis_lineapunctat ..A...........C......G....A........G........A...T.......C..............T.....C.. AP012090.1_Luxilus_cornutus_mito ..A...........C.....C.....AT....................T.......CT...................C.. AP012091.1_Lythrurus_ardens_mito ..A........T..C..G........A..T..G..G........A............T...................C.. AP012092.1_Lythrurus_fumeus_mito ..A........T..C.....C.....A..C..G...........A............T.......G...........C.. AP012093.1_Lythrurus_lirus_mitoc ..A........T..C.....C.....A..T..G..G...........T.........T...................C.. AP012094.1_Lythrurus_umbratilis_ ..A........T..C..G........A..T..G..G........A............T...................C.. AP012095.1_Macrhybopsis_meeki_mi ..A..G..T.....C......G....AT....G.......................C..T.....G.............. AP012097.1_Notropis_bifrenatus_m ..A........T..C.....CG.T.....C.....G........A...T......................T..T..C.. AP012098.1_Pimephales_sp._MCZunc ..A..G..T.....C.....CG....AT.......G............T......................T.....C.. AP012100.1_Notropis_telescopus_m ..A...........T.....CG....A....................TT......................T.....C.. AP012101.1_Pimephales_notatus_mi ..A.....T.....C.....CG....AT.......G............T......................T...A.C.. AP012102.1_Pimephales_vigilax_mi ..A...........A......G....A..G.....G............T.......CT.............T.....C.. AP012103.1_Pogonichthys_macrolep ..............C.....C.....A..G..............A........C.....C.................C.. AP012106.1_Richardsonius_balteat ...........T..C...........A.....G...........A..............C.................C.. AP012108.1_Notropis_chrosomus_mi ..T...........C.....CG....A..G.....G............T........T.............T........ AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..A...........A......G....A..G.....G............T.......CT.............T.....C.. Pimephales_vigilax_R1S3_________ ..A...........A......G....A..G.....G............T.......CT.............T.....C.. DQ536429.1_Notropis_stramineus_m ..A..G..T..T..C.....CG.G..A.....G...........A...T.............G........T.....C.. JX910141.1_Squaliobarbus_curricu ..A...........A.........................................C....................... KC351187.1_Squaliobarbus_curricu ..A...........A.........................................C....................... KT278765.1_Pimephales_promelas_m ..A.....T..T..C.....CG....A........G..G.........T....C..C..............T........ KT289925.1_Pimephales_promelas_m ..A.....T..T..C.....CG....A........G..G.........T.......C..............T.....C.. KT424924.1_Rhinichthys_osculus_m ..A.....T..T..C..T..CG....A........G.....C..A...T..........C..............T..C.. KU200257.1_Chanodichthys_ilishae ..A..................................................C...T...................... MF972070.1_Siphateles_bicolor_mo ..C.....T..T..A........T...T...................T.........T.............T..T..C.. MG570407.1_Notropis_chalybaeus_v ..A...........T.....CG....A........G........A...T........T..........T........C.. MG570408.1_Notropis_bifrenatus_v ..A........T..C.....CG.T.....C.....G........A...T......................T..T..C.. MG570413.1_Notropis_heterolepis_ ..A........T..C.....CG....A........G..T..C......T........T.............T.....C.. MG570416.1_Rhinichthys_obtusus_v ..............T.....CG....A..G.............................C..............G..C.. MG570417.1_Rhinichthys_obtusus_v ..............T.....CG....A..G.............................C..............G..C.. MG570420.1_Pimephales_notatus_vo ..A..G..T.....C.....CG....AT.......G............T......................T.....C.. MG570443.1_Notropis_hudsonius_is ..A........T..C.....CG....A.....G..G............T....C...........G.....T.....A.. MG570444.1_Rhinichthys_atratulus ..............C.....CG....A..G..............A..............C..............G..C.. MG570445.1_Rhinichthys_atratulus ..............C.....CG....A..G..............A..............C..............G..C.. MG570447.1_Luxilus_cornutus_isol ..A...........C.....C.....AT....................T.......CT.............T.....C.. MG570449.1_Luxilus_cornutus_isol ..A...........C.....C.....AT....................T.......CT.............T.....C.. MG570450.1_Pimephales_notatus_is ..A..G..T.....C.....CG....AT.......G............T......................T.....C.. MG570451.1_Notropis_bifrenatus_i ..A........T..C.....CG.T.....C.....G........A...T......................T..T..C.. MG570453.1_Exoglossum_maxillingu ..A.....T..T..C.....A.....AT..........G.....A...........C..C.................C.. MG570454.1_Pimephales_promelas_i ..A.....T..T..C.....CG....A........G..G.........T.......C..............T.....C.. MG570455.1_Notropis_atherinoides ..A........T..C.....C.....A........G............T........T....G........T..G..C.. MG570456.1_Notropis_atherinoides ..A........T..C.....C.....A..G.....G............T........T.............T..G..C.. MG570457.1_Pimephales_notatus_is ..A..G..T.....C.....CG....AT.......G............T......................T.....C.. MG570458.1_Pimephales_notatus_is ..A..G..T.....C.....CG....AT.......G............T......................T.....C.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..A........T..C.....CG....A..G..G..G............T........T....G...........G..C.. MT364325.1_Hybognathus_amarus_mi ..A.....T..T..C.....CG....AT.......G............T....C...T...................C.. MT501368.1_Gila_cypha_isolate_SN ..C.....T..T..A..............G..G..............T..G......T.............T..T..C.. MT501369.1_Notropis_simus_pecose ..A.....T..T..C......G....A.....G...............T........T.............T.....C.. MT501378.1_Hybognathus_amarus_is ..A.....T..T..C.....CG....AT.......G............T....C...T...................C.. MT501385.1_Notropis_jemezanus_vo ..A........T..C.....C.....A........G............T........T.............T..T..C.. MT501391.1_Rhinichthys_osculus_i ..A........T..C..T...G....A........G.......................C.................C.. MT667239.1_Rhinichthys_osculus_t ..A........T..C..T...G....A........G.......................C.................C.. MT667242.1_Luxilus_cornutus_vouc ..A...........C.....C.....AT....................T.......CT.............T.....C.. MW300340.1_Hybognathus_placitus_ ..A........T..C.....C.....AT.......G............T........T...................C.. MW300341.1_Hybognathus_placitus_ ..A........T..C.....C.....AT.......G............T........T...................C.. NC_013763.1_Mylocheilus_caurinus ........T..T..C.....C.....A.................A........C.....C.................C.. NC_033926.1_Opsopoeodus_emiliae_ ..C..C..T.....C.....A.....A.................A..............T.................... NC_037008.1_Notropis_chalybaeus_ ..A...........T.....CG....A........G........A...T........T..........T........C.. NC_037009.1_Notropis_heterolepis ..A........T..C.....CG....A........G..T..C......T........T.............T.....C.. NC_037010.1_Rhinichthys_obtusus_ ..............T.....CG....A..G.............................C..............G..C.. NC_037014.1_Notropis_hudsonius_i ..A........T..C.....CG....A.....G..G............T....C...........G.....T.....A.. NC_037015.1_Exoglossum_maxilling ..A.....T..T..C.....A.....AT..........G.....A...........C..C.................C.. NC_054086.1_Ptychocheilus_lucius ..C..G..T..T..A........T.....G..G.................G......T.............T..T..C.. NC_054257.1_Gila_cypha_isolate_S ..C.....T..T..A..............G..G..............T..G......T.............T..T..C.. NC_054259.1_Gila_nigrescens_isol ..C..G..T..T..A..............G..G..............T..G......T.......G.....T..T..C.. NC_054260.1_Hybognathus_amarus_i ..A.....T..T..C.....CG....AT.......G............T....C...T...................C.. NC_054262.1_Notropis_jemezanus_v ..A........T..C.....C.....A........G............T........T.............T..T..C.. Pimephales_notatus_R2S3_________ ..A.....T..T..C.....CG....AT....................T.......C..............T.....C.. Pimephales_tenellus_tenellu_R2S1 ..A...........C.....CG....A........G............T.......CT.............T..T..C.. Pimephales_tenellus_parvice_R2S2 ..A...........C.....CG....AT.......G............T.......CT.............T.....C.. Pimephales_notatus_R1S1_________ ..A.....T..T..C.....CG....AT....................T.......C..............T.....C.. MG570452.1_Pimephales_promelas_i ..A.....T..T..C.....CG....A........G..G.........T.......C..............T.....C.. MG570452.1_Pimephales_promelas_S ..A.....T..T..C.....CG....A........G..G.........T.......C..............T.....C.. AB626850.1_Megalobrama_terminali ACGAGAAGTATCCTCAGTAGAATTAACTATAACAAATGTAGAATGACTTCATGGCTGCCCTCCACCATACCACACATTTG AP010779.1_Mylocheilus_caurinus_ G.....G..............GC.........................C..C.................T.....G.... AP011215.1_Gila_sp._1460_mitocho ......................C......C......C...........C..C.....T..C........T.....G.... AP011263.1_Scardinius_erythropht ...........................C........C...........C............................... AP011267.1_Algansea_lacustris_mi ...G.................GC....C..G.................A............................... AP011268.1_Yuriria_alta_mitochon ...G..................C....C..G.................A..C....................T....... AP011273.1_Hybognathus_nuchalis_ .....................GC...................G.....A..C...........C..............C. AP011274.1_Couesius_plumbeus_mit G.....................C.......G...................................T.....T.....C. AP011275.1_Platygobio_gracilis_m ...G..................C.........................A..C.................T.......... AP011277.1_Erimystax_dissimilis_ G.....................C......C..................C..C...........C.....T.....G.... AP011279.1_Pimephales_promelas_m ...G............................................A..C...........C..T............. AP011280.1_Clinostomus_elongatus .....................GC..........G..............A..C.................T.....G.... AP012079.1_Luxilus_chrysocephalu ......................C.........................A..C.................T.......... AP012080.1_Macrhybopsis_gelida_m ............T.........C.........................A..C............................ AP012083.1_Notropis_atherinoides .........G..T........GC.........................A..C............................ AP012084.1_Notropis_baileyi_mito .....................GC.......G..G..C...........A..C........C.....C..T........C. AP012087.1_Cyprinella_galactura_ ......................C......................G..A..C..............C.....T.....C. AP012088.1_Hybopsis_lineapunctat .........G...........GC.........................A..C...........C..............C. AP012090.1_Luxilus_cornutus_mito .....................GC.........................G..C.................T.......... AP012091.1_Lythrurus_ardens_mito .........G..T.........C.........................A..C............................ AP012092.1_Lythrurus_fumeus_mito .........G..T.........C.........................A..C.................T.......... AP012093.1_Lythrurus_lirus_mitoc .........G..T.........C...................G.....A..C....................T....... AP012094.1_Lythrurus_umbratilis_ .........G..T.........C.........................A..C....................T....... AP012095.1_Macrhybopsis_meeki_mi ............T........GC....C.C..................A.................T.....T....... AP012097.1_Notropis_bifrenatus_m .....................G..........................A..C............................ AP012098.1_Pimephales_sp._MCZunc ............T........GC.........................A..C...........C..T...........C. AP012100.1_Notropis_telescopus_m .....................GC....C....................A..............C.....T........C. AP012101.1_Pimephales_notatus_mi ............T........GC.........................A..C...........C..T...........C. AP012102.1_Pimephales_vigilax_mi ............T......A.C.....C....................A..C...........C..T..T.......... AP012103.1_Pogonichthys_macrolep G..G..................C..........G..............C..C.......................G.... AP012106.1_Richardsonius_balteat .........G...........GC......................G..C..C.......................C.... AP012108.1_Notropis_chrosomus_mi ......................C.......G..G..............A..C..........................C. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ............T......A.C.....C....................A..C...........C..T..T.......... Pimephales_vigilax_R1S3_________ ............T......A.C.....C....................A..C...........C..T..T.......... DQ536429.1_Notropis_stramineus_m ......................C......................G..A..C...........C.....T.......... JX910141.1_Squaliobarbus_curricu ......................C......................................................... KC351187.1_Squaliobarbus_curricu ......................C......................................................... KT278765.1_Pimephales_promelas_m ................................................A..C...........C..T............. KT289925.1_Pimephales_promelas_m ...G............................................A..C...........C..T............. KT424924.1_Rhinichthys_osculus_m G........G...........GC......C...G..............C..C....................T....... KU200257.1_Chanodichthys_ilishae ...G.................G..............C........G...........T...................... MF972070.1_Siphateles_bicolor_mo ......................C....C.C......C...........C..C..T..T..C........T.......... MG570407.1_Notropis_chalybaeus_v .....................GC.........................A..C..............C..T.......... MG570408.1_Notropis_bifrenatus_v .....................G..........................A..C............................ MG570413.1_Notropis_heterolepis_ .........G...........GC.........................A..C..........................C. MG570416.1_Rhinichthys_obtusus_v .....................G.......C.....................C.................T.......... MG570417.1_Rhinichthys_obtusus_v .....................G.......C.....................C.................T.......... MG570420.1_Pimephales_notatus_vo ............T........GC.........................A..C...........C..T...........C. MG570443.1_Notropis_hudsonius_is .....................G........................T.A..C..........................C. MG570444.1_Rhinichthys_atratulus .....................G.......C..................C..C.................T.......... MG570445.1_Rhinichthys_atratulus .....................G.......C..................C..C.................T.......... MG570447.1_Luxilus_cornutus_isol .....................GC.......G.................G..C.................T.......... MG570449.1_Luxilus_cornutus_isol .....................GC.........................G..C.................T.......... MG570450.1_Pimephales_notatus_is ............T........GC.........................A..C...........T..T...........C. MG570451.1_Notropis_bifrenatus_i .....................G..........................A..C............................ MG570453.1_Exoglossum_maxillingu G.....................C......C..................C..C...........C.....T.....G.... MG570454.1_Pimephales_promelas_i ................................................A..C...........C..T............. MG570455.1_Notropis_atherinoides ............T........GC.............C...........A..C............................ MG570456.1_Notropis_atherinoides .........G..T........GC.............C...........A..C............................ MG570457.1_Pimephales_notatus_is ............T........GC.........................A..C...........C..T...........C. MG570458.1_Pimephales_notatus_is ............T........GC.........................A..C...........C..T...........C. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .....................GC....C..G..C..............A..C........C........T..T....... MT364325.1_Hybognathus_amarus_mi ......................C...................G.....A..C...........C................ MT501368.1_Gila_cypha_isolate_SN ......................C.............C...........C..C..T..T..C........T.......... MT501369.1_Notropis_simus_pecose .....................GC..........C........G.....A..C..........................C. MT501378.1_Hybognathus_amarus_is ......................C...................G.....A..C...........C........T....... MT501385.1_Notropis_jemezanus_vo ......G..G..T........GC.......G.....C...........A..C............................ MT501391.1_Rhinichthys_osculus_i G........G...........GC......C..................C..C.................T..T.....C. MT667239.1_Rhinichthys_osculus_t G........G...........GC......C..................C..C.................T..T.....C. MT667242.1_Luxilus_cornutus_vouc .....................GC.........................G..C.................T.......... MW300340.1_Hybognathus_placitus_ .........G...........GC...................G.....A..C...........C..............C. MW300341.1_Hybognathus_placitus_ .........G...........GC...................G.....A..C...........C..............C. NC_013763.1_Mylocheilus_caurinus G.....G..............GC.........................C..C.................T.....G.... NC_033926.1_Opsopoeodus_emiliae_ .........C...........G..........................A..C...........C..T..T.......... NC_037008.1_Notropis_chalybaeus_ .....................GC.........................A..C..............C..T.......... NC_037009.1_Notropis_heterolepis .........G...........GC.........................A..C..........................C. NC_037010.1_Rhinichthys_obtusus_ .....................G.......C.....................C.................T.......... NC_037014.1_Notropis_hudsonius_i .....................G........................T.A..C..........................C. NC_037015.1_Exoglossum_maxilling G.....................C......C..................C..C...........C.....T.....G.... NC_054086.1_Ptychocheilus_lucius ......................C......C......C...........C..C..T..T...........T.......... NC_054257.1_Gila_cypha_isolate_S ......................C.............C...........C..C..T..T..C........T.......... NC_054259.1_Gila_nigrescens_isol ......................C.............C...........C..C.....T..C........T.......... NC_054260.1_Hybognathus_amarus_i ......................C...................G.....A..C...........C................ NC_054262.1_Notropis_jemezanus_v ......G..G..T........GC.......G.....C...........A..C............................ Pimephales_notatus_R2S3_________ ............T........GC.........................A..C...........C..T...........C. Pimephales_tenellus_tenellu_R2S1 .....................GC.........................A..C...........C..T..T........C. Pimephales_tenellus_parvice_R2S2 ......................C....C...........G........A..C...........C..T..T........C. Pimephales_notatus_R1S1_________ ............T........GC.........................A..C...........C..T...........C. MG570452.1_Pimephales_promelas_i ...G............................................A..C...........C..T............. MG570452.1_Pimephales_promelas_S ...G............................................A..C...........C..T............. AB626850.1_Megalobrama_terminali AAGAGCCTGCATTCGTTCAAGTTCAATCAAACTAACGAGAAAGGAAGGAATTGAACCCCCGTATACTGGTTTCAAGCCAG AP010779.1_Mylocheilus_caurinus_ .G..A..A.....T..C...........................G...............A.G................. AP011215.1_Gila_sp._1460_mitocho .G.....A.....T..G...........................G...............A.G................. AP011263.1_Scardinius_erythropht .G.....A.....T..A...........................G...............A.G................. AP011267.1_Algansea_lacustris_mi .G.....A........C...........................G...............A.G................. AP011268.1_Yuriria_alta_mitochon .G..A..A.....T..C...........................G...............A.G................. AP011273.1_Hybognathus_nuchalis_ .G..A..A.....T..C...........................G...............A.G................. AP011274.1_Couesius_plumbeus_mit .......A........A...........................G...............A.G................. AP011275.1_Platygobio_gracilis_m .G..A..A.....T..C...........................G...............A.G................. AP011277.1_Erimystax_dissimilis_ .G..A..A.....T..C...........................G...............A.G................. AP011279.1_Pimephales_promelas_m .G..A..A.....T..C..............T............G...............A.G................. AP011280.1_Clinostomus_elongatus .......A.....T..C...........................G...............A.G................. AP012079.1_Luxilus_chrysocephalu .......A.....T..C...........................G...............A.G................. AP012080.1_Macrhybopsis_gelida_m .G.....C.....T..............................G...............A................... AP012083.1_Notropis_atherinoides .G..A..A........C...........................G...............A.G................. AP012084.1_Notropis_baileyi_mito .......A.....T..C...........................G...............A.G................. AP012087.1_Cyprinella_galactura_ .G..A..A.....T..C...........................G...............A.G................. AP012088.1_Hybopsis_lineapunctat .G..A..A.....T..............................G................................... AP012090.1_Luxilus_cornutus_mito .G.....A.....T..C...........................G...............A.G................. AP012091.1_Lythrurus_ardens_mito .G..A..A.....T..C...........................G...............A.G................. AP012092.1_Lythrurus_fumeus_mito .......A.....T..C...........................G...............A.G................. AP012093.1_Lythrurus_lirus_mitoc .G..A..A.....T..C...........................G...............A.G................. AP012094.1_Lythrurus_umbratilis_ .G..A..A.....T..C...........................G...............A.G................. AP012095.1_Macrhybopsis_meeki_mi .G..A..A.....T..............................G...............A................... AP012097.1_Notropis_bifrenatus_m .G..A..A.....T..C...........................G...............A.G................. AP012098.1_Pimephales_sp._MCZunc .G..A..A........C..............T............G...............A.G................. AP012100.1_Notropis_telescopus_m .G.....A.....T..C...........................G...............A.G................. AP012101.1_Pimephales_notatus_mi .G..A..A........C...........................G...............A.G................. AP012102.1_Pimephales_vigilax_mi .G..A..A.....T..........G......T............G...............A.G................. AP012103.1_Pogonichthys_macrolep .G.....A.....T..C...........................G...............A.G................. AP012106.1_Richardsonius_balteat ....A..A.....T..C...........................G...............A.G................. AP012108.1_Notropis_chrosomus_mi .G..A..A........C.............G.............GG..............A.G................. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .G..A..A.....T..........G......T............G...............A.G................. Pimephales_vigilax_R1S3_________ .G..A..A.....T..........G......T............G...............A.G................. DQ536429.1_Notropis_stramineus_m .G.....A........C...........................G...............A.G................. JX910141.1_Squaliobarbus_curricu .G..A..A........C............................................................... KC351187.1_Squaliobarbus_curricu .G..A..A........C............................................................... KT278765.1_Pimephales_promelas_m .G..A..A.....T..C..............T............G...............A.G................. KT289925.1_Pimephales_promelas_m .G..A..A.....T..C..............T............G...............A.G................. KT424924.1_Rhinichthys_osculus_m .G..A..A.....T..C........G..................G...............A.G................. KU200257.1_Chanodichthys_ilishae ....A..C........C............................................................... MF972070.1_Siphateles_bicolor_mo .G.....G.....T..G...........................G...............A.G................. MG570407.1_Notropis_chalybaeus_v .G..A..A........C...........................G...............A.G................. MG570408.1_Notropis_bifrenatus_v .G..A..A.....T..C...........................G...............A.G................. MG570413.1_Notropis_heterolepis_ .......A.....T..C...........................G...............A................... MG570416.1_Rhinichthys_obtusus_v .G..A..A.....T..............................G...............A.G................. MG570417.1_Rhinichthys_obtusus_v .G..A..A.....T..............................G...............A.G................. MG570420.1_Pimephales_notatus_vo .G..A..A........C..............T............G...............A.G................. MG570443.1_Notropis_hudsonius_is .G..A..A..C..T..C...........................G...............A.G................. MG570444.1_Rhinichthys_atratulus .G..A..A.....T..C........G.....T............G...............A.G................. MG570445.1_Rhinichthys_atratulus .G..A..A.....T..C........G.....T............G...............A.G................. MG570447.1_Luxilus_cornutus_isol .G.....A.....T..C...........................G...............A.G................. MG570449.1_Luxilus_cornutus_isol .G.....A.....T..C...........................G...............A.G................. MG570450.1_Pimephales_notatus_is .G..A..A........C..............T............G...............A.G................. MG570451.1_Notropis_bifrenatus_i .G..A..A.....T..C...........................G...............A.G................. MG570453.1_Exoglossum_maxillingu .G..A..A.....T..C...........................G...............A.G................. MG570454.1_Pimephales_promelas_i .G..A..A.....T..C..............T............G...............A.G................. MG570455.1_Notropis_atherinoides .G..A..A........C...........................G...............A.G................. MG570456.1_Notropis_atherinoides .G..A..A........C...........................G...............A.G................. MG570457.1_Pimephales_notatus_is .G..A..A........C..............T............G...............A.G................. MG570458.1_Pimephales_notatus_is .G..A..A........C..............T............G...............A.G................. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .G..A..A.....T..............................G...............A.G................. MT364325.1_Hybognathus_amarus_mi .G..A..A.....T..C...........................G...............A.G................. MT501368.1_Gila_cypha_isolate_SN .G.....A........G...........................G...............A.G................. MT501369.1_Notropis_simus_pecose .G..A..A.....T..C...........................G...............A.G................. MT501378.1_Hybognathus_amarus_is .G..A..A.....T..C...........................G...............A.G................. MT501385.1_Notropis_jemezanus_vo .G..A..A........C...........................G...............A.G................. MT501391.1_Rhinichthys_osculus_i .G..A..A.....T..C........G..................G...............A.G................. MT667239.1_Rhinichthys_osculus_t .G..A..A.....T..C........G..................G...............A.G................. MT667242.1_Luxilus_cornutus_vouc .G.....A.....T..C...........................G...............A.G................. MW300340.1_Hybognathus_placitus_ .G..A..A.....T..............................G...............A.G................. MW300341.1_Hybognathus_placitus_ .G..A..A.....T..............................G...............A.G................. NC_013763.1_Mylocheilus_caurinus .G..A..A.....T..C...........................G...............A.G................. NC_033926.1_Opsopoeodus_emiliae_ .......A.....T.....G.......T...T............G...............A.......A.......G... NC_037008.1_Notropis_chalybaeus_ .G..A..A........C...........................G...............A.G................. NC_037009.1_Notropis_heterolepis .......A.....T..C...........................G...............A................... NC_037010.1_Rhinichthys_obtusus_ .G..A..A.....T..............................G...............A.G................. NC_037014.1_Notropis_hudsonius_i .G..A..A..C..T..C...........................G...............A.G................. NC_037015.1_Exoglossum_maxilling .G..A..A.....T..C...........................G...............A.G................. NC_054086.1_Ptychocheilus_lucius .G..A..A.....T..G...........................G...............A.G................. NC_054257.1_Gila_cypha_isolate_S .G.....A........G...........................G...............A.G................. NC_054259.1_Gila_nigrescens_isol .G.....A.....T..G...........................G...............A.G................. NC_054260.1_Hybognathus_amarus_i .G..A..A.....T..C...........................G...............A.G................. NC_054262.1_Notropis_jemezanus_v .G..A..A........C...........................G...............A.G................. Pimephales_notatus_R2S3_________ .G..A..A........C..............T............G...............A.G................. Pimephales_tenellus_tenellu_R2S1 .G..A..A.....T..C...........................G...............A.G................. Pimephales_tenellus_parvice_R2S2 .G..A..A.....T..C...........................G...............A.G................. Pimephales_notatus_R1S1_________ .G..A..A........C..............T............G...............A.G................. MG570452.1_Pimephales_promelas_i .G..A..A.....T..C..............T............G...............A.G................. MG570452.1_Pimephales_promelas_S .G..A..A.....T..C..............T............G...............A.G................. AB626850.1_Megalobrama_terminali TCACATGACCACTCTGTCACTTTCTTCTA-----AGACATTAGTAAAATATGCAAATTACATCACCTTGTCAAGGTGAAA AP010779.1_Mylocheilus_caurinus_ ......A......................----A................C.T..................G.....G.. AP011215.1_Gila_sp._1460_mitocho ......A......................----G..................AGT................G........ AP011263.1_Scardinius_erythropht ......A......................----A...............G....T................G........ AP011267.1_Algansea_lacustris_mi ......A......................----G...............T....C................G........ AP011268.1_Yuriria_alta_mitochon ......A.....................G----G..........-.........T......................... AP011273.1_Hybognathus_nuchalis_ ......A...................T..----G....................T................G........ AP011274.1_Couesius_plumbeus_mit ......A.....................G----A.............................................. AP011275.1_Platygobio_gracilis_m ......A.....................G----G..G.................C......................... AP011277.1_Erimystax_dissimilis_ ......A......................----A................C...-......................... AP011279.1_Pimephales_promelas_m C.....A.....................G----G..........-.........C.......T.............A... AP011280.1_Clinostomus_elongatus ......A......................----A................C.T..................G........ AP012079.1_Luxilus_chrysocephalu ......A.....................G----G....................T................G........ AP012080.1_Macrhybopsis_gelida_m ......A.....................G----G..............C.C.T........C............A..G.. AP012083.1_Notropis_atherinoides ......A......................----G...T................T................G........ AP012084.1_Notropis_baileyi_mito ......A...................A.G----G....................T................G.......G AP012087.1_Cyprinella_galactura_ ......A.....................G----G..............C......................G........ AP012088.1_Hybopsis_lineapunctat ......A.........C.........T.G----G....................T........G.......G...C.... AP012090.1_Luxilus_cornutus_mito ......A.....................G----G....................T................G........ AP012091.1_Lythrurus_ardens_mito ......A...................T..----G....................T.......T........G........ AP012092.1_Lythrurus_fumeus_mito ......A...................T..----G....................T................G........ AP012093.1_Lythrurus_lirus_mitoc ......A...................T..----G....................T.......T........G........ AP012094.1_Lythrurus_umbratilis_ ......A...................T..----G....................T.......T........G........ AP012095.1_Macrhybopsis_meeki_mi ......A.....................G----G..............C.C.T........................... AP012097.1_Notropis_bifrenatus_m ......A.....................G----G.................A..T................G........ AP012098.1_Pimephales_sp._MCZunc C.....A.....................G----G....................T.......T........G........ AP012100.1_Notropis_telescopus_m ......A......................----G....................T................G........ AP012101.1_Pimephales_notatus_mi C.....A.....................G----G....................T.......T........G........ AP012102.1_Pimephales_vigilax_mi C.....A......................----G..........-...C.....T.......T.............A... AP012103.1_Pogonichthys_macrolep ......A......................----A..................T..................G........ AP012106.1_Richardsonius_balteat ......A......................----A................C.T..................G........ AP012108.1_Notropis_chrosomus_mi ......A.....................G----G....................T................G........ AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ C.....A......................----G..........-...C.....T.......T.............A... Pimephales_vigilax_R1S3_________ C.....A......................----G..........-...C.....T.......T.............A... DQ536429.1_Notropis_stramineus_m ......A.....................G----G....................T.........T......G..A..... JX910141.1_Squaliobarbus_curricu ......A.....................G----A................C....................G........ KC351187.1_Squaliobarbus_curricu ......A.....................G----A................C....................G........ KT278765.1_Pimephales_promelas_m C.....A.....................G----G..........-.........C.......T.............A... KT289925.1_Pimephales_promelas_m C.....A.....................G----G..........-.........C.......T.............A... KT424924.1_Rhinichthys_osculus_m ......A......................----A................C....................G........ KU200257.1_Chanodichthys_ilishae ......A......................----A................C....................G........ MF972070.1_Siphateles_bicolor_mo C.....A......................----G..................A.T................G........ MG570407.1_Notropis_chalybaeus_v ......A.....................G----G....................T................G..A..... MG570408.1_Notropis_bifrenatus_v ......A.....................G----G.................A..T................G........ MG570413.1_Notropis_heterolepis_ ......A....................------G..G...............T.T................G..A..... MG570416.1_Rhinichthys_obtusus_v ......A......................----A................C....................G........ MG570417.1_Rhinichthys_obtusus_v ......A......................----A................C....................G........ MG570420.1_Pimephales_notatus_vo C.....A.....................G----G....................T.......T........G........ MG570443.1_Notropis_hudsonius_is ......A...................--.----G..G...............A.C................G........ MG570444.1_Rhinichthys_atratulus ......A......................----G................C....................G........ MG570445.1_Rhinichthys_atratulus ......A......................----G................C....................G........ MG570447.1_Luxilus_cornutus_isol ......A.....................G----G....................T................G........ MG570449.1_Luxilus_cornutus_isol ......A.....................G----G....................T................G........ MG570450.1_Pimephales_notatus_is C.....A.....................G----G....................T.......T........G........ MG570451.1_Notropis_bifrenatus_i ......A.....................G----G.................A..T................G........ MG570453.1_Exoglossum_maxillingu ......A......................----A................C...-......................... MG570454.1_Pimephales_promelas_i C.....A.....................G----G..........-.........C.......T.............A... MG570455.1_Notropis_atherinoides ......A......................----G...T................T................G........ MG570456.1_Notropis_atherinoides ......A......................----G...T................T................G........ MG570457.1_Pimephales_notatus_is C.....A.....................G----G....................T.......T........G........ MG570458.1_Pimephales_notatus_is C.....A.....................G----G....................T.......T........G........ MK421554.1_Parabramis_pekinensis .............................-----.............................................. MT333789.1_Notropis_lutipinnis_v ......A....................CG----G....................T................G..A..... MT364325.1_Hybognathus_amarus_mi ......A...................T..----G....................T................G........ MT501368.1_Gila_cypha_isolate_SN ......A.....................G----G...T..............A.T................G........ MT501369.1_Notropis_simus_pecose ......A.....................G----G....................T................G........ MT501378.1_Hybognathus_amarus_is ......A...................T..----G....................T................G........ MT501385.1_Notropis_jemezanus_vo ......A...................T..----G...T................T................G........ MT501391.1_Rhinichthys_osculus_i ......A......................----A................C............................. MT667239.1_Rhinichthys_osculus_t ......A......................----A................C............................. MT667242.1_Luxilus_cornutus_vouc ......A.....................G----G....................T................G........ MW300340.1_Hybognathus_placitus_ ......A.....................G----G....................T................G........ MW300341.1_Hybognathus_placitus_ ......A.....................G----G....................T................G........ NC_013763.1_Mylocheilus_caurinus ......A......................----A................C.T..................G.....G.. NC_033926.1_Opsopoeodus_emiliae_ ......A...................TCTTTACG...T..........C....CT................G..A..... NC_037008.1_Notropis_chalybaeus_ ......A.....................G----G....................T................G..A..... NC_037009.1_Notropis_heterolepis ......A....................------G..G...............T.T................G..A..... NC_037010.1_Rhinichthys_obtusus_ ......A......................----A................C....................G........ NC_037014.1_Notropis_hudsonius_i ......A...................--.----G..G...............A.C................G........ NC_037015.1_Exoglossum_maxilling ......A......................----A................C...-......................... NC_054086.1_Ptychocheilus_lucius ......A......................----G..................A.T................G.....T.. NC_054257.1_Gila_cypha_isolate_S ......A.....................G----G...T..............A.T................G........ NC_054259.1_Gila_nigrescens_isol ......A......................----G..................A.T................G........ NC_054260.1_Hybognathus_amarus_i ......A...................T..----G....................T................G........ NC_054262.1_Notropis_jemezanus_v ......A...................T..----G...T................T................G........ Pimephales_notatus_R2S3_________ C.....A......................----G....................T.......T................. Pimephales_tenellus_tenellu_R2S1 C.....A......................----G....................C.......T.............A... Pimephales_tenellus_parvice_R2S2 C.....A......................----G....................C.......T.............A... Pimephales_notatus_R1S1_________ C.....A......................----G....................T.......T.............A... MG570452.1_Pimephales_promelas_i C.....A.....................G----G..........-.........C.......T.............A... MG570452.1_Pimephales_promelas_S C.....A.....................G----G..........-.........C.......T.............A... AB626850.1_Megalobrama_terminali TCGCAGGTTAGACCCCTGTATGTCTTAAGCTCAAAG-CTTAATGGCACATCCCACGCAACTAGGATTCCAAGACGCGGCA AP010779.1_Mylocheilus_caurinus_ ..........A................C--CT..GA-T.................A........................ AP011215.1_Gila_sp._1460_mitocho .T..T.....A.....A.C........T--.....A-T.......................................... AP011263.1_Scardinius_erythropht .T........A...................C..GG.CT.................A........................ AP011267.1_Algansea_lacustris_mi .TA.......A..T........C.....-------A-............C.....A........................ AP011268.1_Yuriria_alta_mitochon ..A.......A..T..............-------A-T...........C.....A........................ AP011273.1_Hybognathus_nuchalis_ .TA.......A.................-------A-T...........C.....A........................ AP011274.1_Couesius_plumbeus_mit ..........A...................C...G.-................T.A........................ AP011275.1_Platygobio_gracilis_m .TA.......A...........C....G-------A-............C.....A........................ AP011277.1_Erimystax_dissimilis_ ............G.........C.....-------C-..................A........................ AP011279.1_Pimephales_promelas_m ..A.........................-------A-T...........C.....A........................ AP011280.1_Clinostomus_elongatus ..........A.................-.C...CA-..................A....................A... AP012079.1_Luxilus_chrysocephalu .TA.......A..T..............-------A-T...........C.....A........................ AP012080.1_Macrhybopsis_gelida_m .TA.......A.................-------A-............C.....A.................T..A... AP012083.1_Notropis_atherinoides .TA.......A..T..............-------A-T...........C.....A........................ AP012084.1_Notropis_baileyi_mito .T........A..T..............-------A-T...........C.....A........................ AP012087.1_Cyprinella_galactura_ .T........A..T....C.......G.-------A-...T........C.....A..G.....G..T.....T...... AP012088.1_Hybopsis_lineapunctat .TT.......A.................-------ATT...........C...T.A........................ AP012090.1_Luxilus_cornutus_mito .TA..........T..............-------A-T...........C.....A........................ AP012091.1_Lythrurus_ardens_mito .T........A..T..............-------A-T...........C.....A........................ AP012092.1_Lythrurus_fumeus_mito .TA.......A..T..............-------A-T...........C.....A........................ AP012093.1_Lythrurus_lirus_mitoc .TA.......A..T....C.........-------A-T...........C.....A........................ AP012094.1_Lythrurus_umbratilis_ .T........A..T..............-------A-T...........C.....A........................ AP012095.1_Macrhybopsis_meeki_mi .TA.......A...........C.....-------A-............C.....A....................A... AP012097.1_Notropis_bifrenatus_m .TA.......A..T..............-------A-............C.....A...........T............ AP012098.1_Pimephales_sp._MCZunc .TA.......A..T..............-------A-............C.....A...........T............ AP012100.1_Notropis_telescopus_m .TA.......A..T..............-------A-TC..........C.....A........................ AP012101.1_Pimephales_notatus_mi .TA.......A..T..............-------A-............C.....A...........T............ AP012102.1_Pimephales_vigilax_mi .TA.......A..T.............G-------A-T...........C..T..A...T.......T..G......... AP012103.1_Pogonichthys_macrolep ..........A................C--CT...A-T.................A........................ AP012106.1_Richardsonius_balteat ..........A.................-.CT..CA-..................A........................ AP012108.1_Notropis_chrosomus_mi .T........A..T..............-------A-T...........C.....A........................ AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .TA.......A..T.............G-------A-T...........C..T..A...T.......T..G......... Pimephales_vigilax_R1S3_________ .TA.......A..T.............G-------A-T...........C..T..A...T.......T..G......... DQ536429.1_Notropis_stramineus_m .TA.......A..T..............-------A-T...........C.....A........................ JX910141.1_Squaliobarbus_curricu .T........A.T.......................-......................T.................... KC351187.1_Squaliobarbus_curricu .T........A.T.......................-......................T.................... KT278765.1_Pimephales_promelas_m .TA.........................-------A-T...........C.....A........................ KT289925.1_Pimephales_promelas_m .TA.........................-------A-T...........C.....A........................ KT424924.1_Rhinichthys_osculus_m .T..........................-.CT..GA-..................A........................ KU200257.1_Chanodichthys_ilishae .T........A...................C.T..AG........................................... MF972070.1_Siphateles_bicolor_mo .T..T.....A.....A.C.........-.C....A-..................A........................ MG570407.1_Notropis_chalybaeus_v .TA.......A..T..............-------.-T...........C.....A........................ MG570408.1_Notropis_bifrenatus_v .TA.......A..T..............-------A-............C.....A...........T............ MG570413.1_Notropis_heterolepis_ .TA.......A..T........C.....-------A-T...........C.....A........................ MG570416.1_Rhinichthys_obtusus_v .T........A........G........-GCT..GA-..................A........................ MG570417.1_Rhinichthys_obtusus_v .T........A........G........-GCT..GA-..................A........................ MG570420.1_Pimephales_notatus_vo .TA.......A..T..............-------A-............C.....A...........T............ MG570443.1_Notropis_hudsonius_is .TA.......A..T..C.....C.....-------A-............C.....A.......................C MG570444.1_Rhinichthys_atratulus .T........A.................-G.T..GA-..................A........................ MG570445.1_Rhinichthys_atratulus .T........A.................-G.T..GA-..................A........................ MG570447.1_Luxilus_cornutus_isol .TA.......A..T..............-------A-T...........C.....A........................ MG570449.1_Luxilus_cornutus_isol .TA.......A..T..............-------A-T...........C.....A........................ MG570450.1_Pimephales_notatus_is .TA.......A..T..............-------A-............C.....A...........T............ MG570451.1_Notropis_bifrenatus_i .TA.......A..T..............-------A-............C.....A........................ MG570453.1_Exoglossum_maxillingu ............G.........C.....-------C-..................A........................ MG570454.1_Pimephales_promelas_i .TA.........................-------A-T...........C.....A........................ MG570455.1_Notropis_atherinoides .TA.......A..T.......A......-------A-T...........C.....A........................ MG570456.1_Notropis_atherinoides .TA.......A..T..............-------A-T...........C.....A........................ MG570457.1_Pimephales_notatus_is .TA.......A..T..............-------A-............C.....A...........T............ MG570458.1_Pimephales_notatus_is .TA.......A..T..............-------A-............C.....A...........T............ MK421554.1_Parabramis_pekinensis ....................................-........................................... MT333789.1_Notropis_lutipinnis_v .TA.......A..T..............-------A-T...........C.....A........................ MT364325.1_Hybognathus_amarus_mi .TA.......A.................-------A-TC..........C.....A........................ MT501368.1_Gila_cypha_isolate_SN .T..T.....A.T...A.C........T--C...GA-T.......................................... MT501369.1_Notropis_simus_pecose .TA.......A..T..............-------A-T...........C.....A........................ MT501378.1_Hybognathus_amarus_is .T........A.................-------A-TC..........C.....A........................ MT501385.1_Notropis_jemezanus_vo .TA.......A..T..............-------A-T...........C.....A........................ MT501391.1_Rhinichthys_osculus_i ..........A...........C....G-.C...G.-..................A........................ MT667239.1_Rhinichthys_osculus_t ..........A...........C.....-.C...G.-..................A........................ MT667242.1_Luxilus_cornutus_vouc .TA.......A..T..............-------A-T...........C.....A........................ MW300340.1_Hybognathus_placitus_ .TA.......A..T..............-------A-T...........C.....A........................ MW300341.1_Hybognathus_placitus_ .TA.......A..T..............-------A-T...........C.....A........................ NC_013763.1_Mylocheilus_caurinus ..........A................C--CT..GA-T.................A........................ NC_033926.1_Opsopoeodus_emiliae_ .TA.......A..T..............-------A-T...........C...G.A..G.....C............... NC_037008.1_Notropis_chalybaeus_ .TA.......A..T..............-------.-T...........C.....A........................ NC_037009.1_Notropis_heterolepis .TA.......A..T........C.....-------A-T...........C.....A........................ NC_037010.1_Rhinichthys_obtusus_ .T........A........G........-GCT..GA-..................A........................ NC_037014.1_Notropis_hudsonius_i .TA.......A..T..C.....C.....-------A-............C.....A.......................C NC_037015.1_Exoglossum_maxilling ............G.........C.....-------C-..................A........................ NC_054086.1_Ptychocheilus_lucius .T..T.....A.T...A.C........T--C...TA-T.............................T............ NC_054257.1_Gila_cypha_isolate_S .T..T.....A.T...A.C........T--C...GA-T.......................................... NC_054259.1_Gila_nigrescens_isol .TA.T.....A.....A.C........T---TC..A-A..G....................................... NC_054260.1_Hybognathus_amarus_i .T........A.................-------A-TC..........C.....A........................ NC_054262.1_Notropis_jemezanus_v .TA.......A..T..............-------A-T...........C.....A........................ Pimephales_notatus_R2S3_________ .TA.......A.................-------A-T.................A...........T............ Pimephales_tenellus_tenellu_R2S1 .AA.......A..T..............-------A-T...........C.....A........................ Pimephales_tenellus_parvice_R2S2 .AA.......A..T..............-------A-T...........C.....A........................ Pimephales_notatus_R1S1_________ .TA.......A.................-------A-T.................A...........T............ MG570452.1_Pimephales_promelas_i .TA.........................-------A-T...........C.....A........................ MG570452.1_Pimephales_promelas_S ..A.........................-------A-T...........C.....A........................ AB626850.1_Megalobrama_terminali TCACCCGTTATAGAAGAACTTCTTCACTTCCATGACCACGCCCTAATAATCGTATTCTTAATTAGTACTCTAGTACTTTA AP010779.1_Mylocheilus_caurinus_ ............................................G.....T.....T.....C..C..AT.......C.. AP011215.1_Gila_sp._1460_mitocho ..................................................T.....TC.......C...T.......... AP011263.1_Scardinius_erythropht ..................................................T...C..........C.TCT.......C.. AP011267.1_Algansea_lacustris_mi .......................C..........................T.....T........C..AA.......C.. AP011268.1_Yuriria_alta_mitochon ........C..............................A..........T.....T........C..AA.......... AP011273.1_Hybognathus_nuchalis_ ................................C.................T.....T........C..AA.G.....C.. AP011274.1_Couesius_plumbeus_mit ...................................T........G.....T.....T........C...T.......... AP011275.1_Platygobio_gracilis_m ............................................G.....T.....T........C..AA....G..C.. AP011277.1_Erimystax_dissimilis_ ..................................................T.....T........C..AA.......C.. AP011279.1_Pimephales_promelas_m .........................................T........T.....T........C..AA.......C.. AP011280.1_Clinostomus_elongatus ..................................................T.....T........C..AT.G.....C.. AP012079.1_Luxilus_chrysocephalu ..................................................T.....T..G.....C..AA.......C.. AP012080.1_Macrhybopsis_gelida_m .....T.............................T..............T..G..T.....C.....AA.......A.. AP012083.1_Notropis_atherinoides ................................C.................T.....T........C..AA.G.....C.. AP012084.1_Notropis_baileyi_mito ................................C.........T.......T..............C..GA.......C.. AP012087.1_Cyprinella_galactura_ ....................C........T.................G..T..G..T.....C..C..AA.......... AP012088.1_Hybopsis_lineapunctat ..........................T.....C.................T.....T........C..AA.......C.. AP012090.1_Luxilus_cornutus_mito ................................C.................T.....T........C..AA.......C.. AP012091.1_Lythrurus_ardens_mito .....T............................................T.....T..G.....C..AA.......C.. AP012092.1_Lythrurus_fumeus_mito ..................................................T.....T.....C..C..AA.......... AP012093.1_Lythrurus_lirus_mitoc ...................................T..............T.....T........C..AA.......C.. AP012094.1_Lythrurus_umbratilis_ ..................................................T.....T........C..AA.......C.. AP012095.1_Macrhybopsis_meeki_mi .....T..........................C..T........G.....T..G..T...........AA.......A.. AP012097.1_Notropis_bifrenatus_m ...................................T......T.......T.....T..G.....C..AA.......... AP012098.1_Pimephales_sp._MCZunc ..................................................T.....T...........AA.......C.. AP012100.1_Notropis_telescopus_m ..........................T.....C.................T.....T........C..AA.......C.. AP012101.1_Pimephales_notatus_mi ..................................................T.....T...........AA.......C.. AP012102.1_Pimephales_vigilax_mi ........C.................T..T..C.....T...........T.....T.....C.....CA.......C.. AP012103.1_Pogonichthys_macrolep ............................................G.....T.....T.....C..C..AT.......C.. AP012106.1_Richardsonius_balteat ..................................................T.....T........C..AT.......C.. AP012108.1_Notropis_chrosomus_mi ................................C.................T..............C..AA.......... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ........C.................T..T..C.....T...........T.....T.....C.....CA.......C.. Pimephales_vigilax_R1S3_________ ........C.................T..T..C.....T...........T.....T.....C.....CA.......C.. DQ536429.1_Notropis_stramineus_m ..T.......................T.....C.................T.....T........C..AA.......... JX910141.1_Squaliobarbus_curricu ....................A...................................T........C...T.......... KC351187.1_Squaliobarbus_curricu ....................A...................................T........C...T.......... KT278765.1_Pimephales_promelas_m .........................................T........T.....T........C..AA.......C.. KT289925.1_Pimephales_promelas_m .........................................T........T.....T........C..AA.......C.. KT424924.1_Rhinichthys_osculus_m ..................................................T.....T........C..GA.G.....C.. KU200257.1_Chanodichthys_ilishae .....................................................G...........C.............. MF972070.1_Siphateles_bicolor_mo ...................................T.....T........T.....TC.......C..CT.......... MG570407.1_Notropis_chalybaeus_v ........A.................T.....C.................T.....T........C..AA.......C.. MG570408.1_Notropis_bifrenatus_v ...................................T......T.......T.....T..G.....C..AA.......... MG570413.1_Notropis_heterolepis_ ..........................T.....C.................T.....T........C..AA.G.....C.. MG570416.1_Rhinichthys_obtusus_v ..................................................T.....T........C..AA.......C.. MG570417.1_Rhinichthys_obtusus_v ..................................................T.....T........C..AA.......C.. MG570420.1_Pimephales_notatus_vo ..................................................T.....T...........AA.......C.. MG570443.1_Notropis_hudsonius_is ........C..............C..........................T.....T........C..AA....G..C.. MG570444.1_Rhinichthys_atratulus ..................................................T.....T........C..AA.......C.. MG570445.1_Rhinichthys_atratulus ..................................................T.....T........C..AA.......C.. MG570447.1_Luxilus_cornutus_isol ..................................................T.....T........C..AA.......C.. MG570449.1_Luxilus_cornutus_isol ..................................................T.....T........C..AA.......C.. MG570450.1_Pimephales_notatus_is ..................................................T.....T...........AA.......C.. MG570451.1_Notropis_bifrenatus_i ...................................T......T.......T.....T..G.....C..AA.......... MG570453.1_Exoglossum_maxillingu ..................................................T.....T........C..AA.......C.. MG570454.1_Pimephales_promelas_i .........................................T........T.....T........C..AA.......C.. MG570455.1_Notropis_atherinoides ................................C.................T.....T........C..AA.G.....C.. MG570456.1_Notropis_atherinoides ................................C.................T.....T........C..AA.G.....C.. MG570457.1_Pimephales_notatus_is ..................................................T.....T...........AA.......C.. MG570458.1_Pimephales_notatus_is ..................................................T.....T...........AA.......C.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .......................C.....T.....T..............T..............C..AA.......C.. MT364325.1_Hybognathus_amarus_mi ................................C.................T.....T........C..AA.......C.. MT501368.1_Gila_cypha_isolate_SN ..................................................T.....TC.......C...T.......... MT501369.1_Notropis_simus_pecose ................................C...........T.....T........G.....C..GA.......C.. MT501378.1_Hybognathus_amarus_is ................................C.................T.....T........C..AA.......C.. MT501385.1_Notropis_jemezanus_vo ................................C.................T.....T........C..AA.G.....C.. MT501391.1_Rhinichthys_osculus_i ............................................G.....T.....T........C..AA.......C.. MT667239.1_Rhinichthys_osculus_t ............................................G.....T.....T........C..AA.......C.. MT667242.1_Luxilus_cornutus_vouc ..................................................T.....T........C..AA.......C.. MW300340.1_Hybognathus_placitus_ ................................C.................T.....T........C..AA.......C.. MW300341.1_Hybognathus_placitus_ ..................................................T.....T........C..AA.......C.. NC_013763.1_Mylocheilus_caurinus ............................................G.....T.....T.....C..C..AT.......C.. NC_033926.1_Opsopoeodus_emiliae_ ..........................T...........T...........T.....T........C..AA....G..C.. NC_037008.1_Notropis_chalybaeus_ ........A.................T.....C.................T.....T........C..AA.......C.. NC_037009.1_Notropis_heterolepis ..........................T.....C.................T.....T........C..AA.G.....C.. NC_037010.1_Rhinichthys_obtusus_ ..................................................T.....T........C..AA.......C.. NC_037014.1_Notropis_hudsonius_i ........C..............C..........................T.....T........C..AA....G..C.. NC_037015.1_Exoglossum_maxilling ..................................................T.....T........C..AA.......C.. NC_054086.1_Ptychocheilus_lucius .....T............................................T.....TC.......C...T.......... NC_054257.1_Gila_cypha_isolate_S ..................................................T.....TC.......C...T.......... NC_054259.1_Gila_nigrescens_isol ..................................................T.....TC.......C...T.......... NC_054260.1_Hybognathus_amarus_i ................................C.................T.....T........C..AA.......C.. NC_054262.1_Notropis_jemezanus_v ................................C.................T.....T........C..AA.G.....C.. Pimephales_notatus_R2S3_________ ...........G........C.............................T.....T...........AA.......C.. Pimephales_tenellus_tenellu_R2S1 .................G................................T.....T........C..AA.......C.. Pimephales_tenellus_parvice_R2S2 .....T...........G................................T.....T........C..AA.......C.. Pimephales_notatus_R1S1_________ ...........G........C.............................T.....T...........AA.......C.. MG570452.1_Pimephales_promelas_i .........................................T........T.....T........C..AA.......C.. MG570452.1_Pimephales_promelas_S .........................................T........T.....T........C..AA.......C.. AB626850.1_Megalobrama_terminali TATTATTATTGCAATGGTTTCAACCAAACTTACTAACAAATATATTCTAGACTCCCAAGAGATCGAAATCGTATGAACTA AP010779.1_Mylocheilus_caurinus_ ..................C..G..T.....C..C..T.........T....T........A........T........AG AP011215.1_Gila_sp._1460_mitocho .......G..........C.....T........C..T.................T.....A........T........G. AP011263.1_Scardinius_erythropht ..................C........G.....C..T..G..C...T.............A..............G..AG AP011267.1_Algansea_lacustris_mi .......G.......A.................C.....G.....CT.............A.....G..T.....G..AG AP011268.1_Yuriria_alta_mitochon C......G.C.....A.................C...........CT....T........A..T..G..T........AG AP011273.1_Hybognathus_nuchalis_ C......G.C.....A..C...........A..C..T........CT....T........A........T........AG AP011274.1_Couesius_plumbeus_mit ......C...........C.....T........C..T........CT.............A........T..G.....AG AP011275.1_Platygobio_gracilis_m C.....C...........C..............C............T.............A.....G..T.....G..AG AP011277.1_Erimystax_dissimilis_ .......G................T........C..T..G.....CT....T........A........T........AG AP011279.1_Pimephales_promelas_m C......G.C.....A..C..............C..T..G......T....T........A........T........AG AP011280.1_Clinostomus_elongatus .......G..........C..G..T........C..T.........T.............A........T........AG AP012079.1_Luxilus_chrysocephalu C......G.C.....A...........G..C..C...........CT....T........A.....G..T........AG AP012080.1_Macrhybopsis_gelida_m C......G..........C.................T.........T.............A........T........AG AP012083.1_Notropis_atherinoides C......G.C.....A........T.....C..C...........CT....T........A.....G..T.....G..GG AP012084.1_Notropis_baileyi_mito C......G.C.....A........A........C..T..G.....CT.......T.....A........T........AG AP012087.1_Cyprinella_galactura_ C......G.C..G..A.....G..T.....C.....T........C..T........G.....T..G..T..G.....AG AP012088.1_Hybopsis_lineapunctat C......G.C.....A.......................G......T..........G..A.....G..T........GG AP012090.1_Luxilus_cornutus_mito C......G.C.....A.....G........C..C..T........CT....T........A.....G..T........GG AP012091.1_Lythrurus_ardens_mito C......G.C.....A.................C...........CT....T........A.....G..T........GG AP012092.1_Lythrurus_fumeus_mito .......G.C.....A....................T..G....................A.....G..T........GG AP012093.1_Lythrurus_lirus_mitoc C......G.C.....A.................C...........CT....T........A........T........GG AP012094.1_Lythrurus_umbratilis_ C......G.C.....A.................C...........CT....T........A.....G..T........GG AP012095.1_Macrhybopsis_meeki_mi C......G..........C...........................T.............A........T........AG AP012097.1_Notropis_bifrenatus_m C......G.......A.................C..T.........T....T..T.....A.....G..T........GG AP012098.1_Pimephales_sp._MCZunc C..C...G.A.....A........T.....................T....T........A.....G..T........GG AP012100.1_Notropis_telescopus_m C......G.A.....A.................C............T....T..T.....A.....G..T........GG AP012101.1_Pimephales_notatus_mi C..C...G.A.....A........T.....................T....T..A.....A.....G..T........GG AP012102.1_Pimephales_vigilax_mi C........C.....A...........GT....C..T.........T.............A........T........AG AP012103.1_Pogonichthys_macrolep .......G..........C.....T........C..T.....C...T....T........A........T........AG AP012106.1_Richardsonius_balteat .......G.......A..C.....T........C..T.........T.............A........T........AG AP012108.1_Notropis_chrosomus_mi C......G.C.....A........A........C..T.....C..CT....T........A.....G..T..G.....GG AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ C........C.....A...........GT....C..T.........T.............A........T........AG Pimephales_vigilax_R1S3_________ C........C.....A...........GT....C..T.........T.............A........T........AG DQ536429.1_Notropis_stramineus_m C......G.A.....A..............C..C...........CT.G...........A.....G..T..G.....AG JX910141.1_Squaliobarbus_curricu .........C..............T........C........C..CT.............A........T.......... KC351187.1_Squaliobarbus_curricu .........C..............T........C........C..CT.............A........T.......... KT278765.1_Pimephales_promelas_m C......G.C.....A..C...........C..C..T.........T....T........A........T........AG KT289925.1_Pimephales_promelas_m C......G.C.....A..C..............C..T..G......T....T........A........T........AG KT424924.1_Rhinichthys_osculus_m ......CG................T.....C..C..T.........T.............A.................AG KU200257.1_Chanodichthys_ilishae C.......................T..G.....C...........C........T......................... MF972070.1_Siphateles_bicolor_mo ......CG..........C.....T........C..T.....C...T.G.....T.....A........T........AG MG570407.1_Notropis_chalybaeus_v C......G.......A........A........C...........CT.......T.....A........T........GG MG570408.1_Notropis_bifrenatus_v C......G.......A.................C..T.........T....T..T.....A.....G..T........GG MG570413.1_Notropis_heterolepis_ C......G.......A..C..............C.....G.....CT.......T.....A.....G..T........AG MG570416.1_Rhinichthys_obtusus_v C......G.............C..T..G.....C..T.........T.............A........T........AG MG570417.1_Rhinichthys_obtusus_v C......G.............C..T..G.....C..T.........T.............A........T........AG MG570420.1_Pimephales_notatus_vo C..C...G.A.....A........T.....................T....T........A.....G..T........GG MG570443.1_Notropis_hudsonius_is .......G....T..A........T..G.....C..T........CT.............A.....G..T........GG MG570444.1_Rhinichthys_atratulus C......G.............C..T..G.....C..T.........T.............A........T........AG MG570445.1_Rhinichthys_atratulus C......G.............C..T..G.....C..T.........T.............A........T........AG MG570447.1_Luxilus_cornutus_isol C......G.C.....A.....G........C..C..T........CT....T..............G..T........GG MG570449.1_Luxilus_cornutus_isol C......G.C.....A.....G........C..C..T........CT....T..............G..T........GG MG570450.1_Pimephales_notatus_is C..C...G.A.....A........T.....................T....T........A.....G..T........GG MG570451.1_Notropis_bifrenatus_i C......G.......A.................C..T.........T....T..T.....A.....G..T........GG MG570453.1_Exoglossum_maxillingu .......G................T........C..T..G.....CT....T........A........T........AG MG570454.1_Pimephales_promelas_i C......G.C.....A..C..............C..T..G......T....T........A........T........AG MG570455.1_Notropis_atherinoides C......G.C.....A..............C..C...........CT....T........A.....G..T.....G..GG MG570456.1_Notropis_atherinoides C......G.C.....A........T.....C..C...........CT....T........A.....G..T.....G..GG MG570457.1_Pimephales_notatus_is C..C...G.A.....A........T.....................T....T........A.....G..T........GG MG570458.1_Pimephales_notatus_is C..C...G.A.....A........T.....................T....T........A.....G..T........GG MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v C......G.C.....A........A........C..T.....C..CT....T..T.....A.....G..T..G.....AG MT364325.1_Hybognathus_amarus_mi C......G.C.....A..C...........A..C..T.....C..CT....T........A........T........A. MT501368.1_Gila_cypha_isolate_SN .......G..........C.....T........C..T.....C...........T.....A........T........GG MT501369.1_Notropis_simus_pecose C........C.....A........A..G.....C..T........CT.......T.....A.....G..T.....G..AG MT501378.1_Hybognathus_amarus_is C......G.C.....A..C...........A..C..T.....C..CT....T........A........T........A. MT501385.1_Notropis_jemezanus_vo C......G.C.....A..............C..C...........CT....T...........T..G..T.....G..AG MT501391.1_Rhinichthys_osculus_i .......G................T..G.....C..T.........T....T........A........T........AG MT667239.1_Rhinichthys_osculus_t .......G................T..G.....C..T.........T....T........A........T........AG MT667242.1_Luxilus_cornutus_vouc C......G.C.....A.....G........C..C..T........CT....T..............G..T........GG MW300340.1_Hybognathus_placitus_ C......G.C.....A..C...........A..C..T.........T....T........A........T........AG MW300341.1_Hybognathus_placitus_ C......G.C.....A..C...........A..C..T.........T....T........A........T........AG NC_013763.1_Mylocheilus_caurinus ..................C..G..T.....C..C..T.........T....T........A........T........AG NC_033926.1_Opsopoeodus_emiliae_ ............T....................C........C..CT....T.................T........AG NC_037008.1_Notropis_chalybaeus_ C......G.......A........A........C...........CT.......T.....A........T........GG NC_037009.1_Notropis_heterolepis C......G.......A..C..............C.....G.....CT.......T.....A.....G..T........AG NC_037010.1_Rhinichthys_obtusus_ C......G.............C..T..G.....C..T.........T.............A........T........AG NC_037014.1_Notropis_hudsonius_i .......G....T..A........T..G.....C..T........CT.............A.....G..T........GG NC_037015.1_Exoglossum_maxilling .......G................T........C..T..G.....CT....T........A........T........AG NC_054086.1_Ptychocheilus_lucius .......G..........C.....T........C..T.....C...........T.....A........T........GG NC_054257.1_Gila_cypha_isolate_S .......G..........C.....T........C..T.....C...........T.....A........T........GG NC_054259.1_Gila_nigrescens_isol ..................C.....T........C........C...........T.....A........T........GG NC_054260.1_Hybognathus_amarus_i C......G.C.....A..C...........A..C..T.....C..CT....T........A........T........A. NC_054262.1_Notropis_jemezanus_v C......G.C.....A..............C..C...........CT....T..............G..T.....G..AG Pimephales_notatus_R2S3_________ C..C...GCC.....A........T....................CT....T........A.....G..T........AG Pimephales_tenellus_tenellu_R2S1 .......G.C.....A.................C..T........CT....T........A........T........AG Pimephales_tenellus_parvice_R2S2 .......G.C.....A.................C..T........CT.............A........T........AG Pimephales_notatus_R1S1_________ C..C...GCC.....A........T....................CT....T........A.....G..T........AG MG570452.1_Pimephales_promelas_i C......G.C.....A..C..............C..T..G......T....T........A........T........AG MG570452.1_Pimephales_promelas_S C......G.C.....A..C..............C..T..G......T....T........A........T........AG AB626850.1_Megalobrama_terminali TCTTACCAGCTGTCATTCTAGTTTTGATCGCCCTGCCGTCCCTTCGAATTTTATACCTTATAGACGAAATCAATGACCCC AP010779.1_Mylocheilus_caurinus_ .TC.......A..T..C.....C..A..T.....C..C.......................G.....G..T......... AP011215.1_Gila_sp._1460_mitocho .......G.................A..T.....C..T........T....................G..T......... AP011263.1_Scardinius_erythropht ..C....G.....T........C..A..T.....C..C..T.....T........T........T..G..T..C.....T AP011267.1_Algansea_lacustris_mi .T........A......T.......A..T..T..C..C..T.................C.........G.T........T AP011268.1_Yuriria_alta_mitochon .T........A.....C......C.A..T..T..C..T..A..............T........T...G.T........T AP011273.1_Hybognathus_nuchalis_ .T........A..T.........C.A..T.....T..T..T.......................T..GG.T........T AP011274.1_Couesius_plumbeus_mit .TC..........T..CT....C..A..T.....A..C..A.........C....T.....G........T........G AP011275.1_Platygobio_gracilis_m .TC....G..A..T.........C....T.....C..C.................T............G.T......... AP011277.1_Erimystax_dissimilis_ .TC.......G..T......A....A..T..T..C..T.................T..............T........T AP011279.1_Pimephales_promelas_m .T........A..A........CC.T..T.....C..C........C........T........T...G........... AP011280.1_Clinostomus_elongatus .TC.......A..T........C..A..T.....C..C................................T..C...... AP012079.1_Luxilus_chrysocephalu .T........G..T...........A..T..T..T..C.............................GG.T........T AP012080.1_Macrhybopsis_gelida_m .A........G..............A..T.....C..C..............................G.T........T AP012083.1_Notropis_atherinoides .T........G..T.........C.A.....T..T..C.................T........T...G.......T... AP012084.1_Notropis_baileyi_mito .A........G..G.........C.A..T.....T..T.................T............G.T......... AP012087.1_Cyprinella_galactura_ ..C.......A...........AC.A..T..T..T..T.....C...........T............G.T........T AP012088.1_Hybopsis_lineapunctat ..C.......A...........CC.A........T..T.................T............G.T........T AP012090.1_Luxilus_cornutus_mito .T........G..T.........C.A..T..T..T..T.................T...........GG.T........T AP012091.1_Lythrurus_ardens_mito .T........A..T.........C.A..T..T..T..T........G........T...........GG.T.....T... AP012092.1_Lythrurus_fumeus_mito ..........A.........A..C.A..T..T..T...........G........T...........GG.T......... AP012093.1_Lythrurus_lirus_mitoc .T........A..T.........C.A..T..T..T..T.................T...........GG.T.....T... AP012094.1_Lythrurus_umbratilis_ .T........A..T.........C.A..T..T..T..T........G........T...........GG.T.....T... AP012095.1_Macrhybopsis_meeki_mi .TC.......A..T........A..A..T.....T..T..............................G.T......... AP012097.1_Notropis_bifrenatus_m .T........G..T........CC.A.....T..T..T............C....T........T..GG.T......... AP012098.1_Pimephales_sp._MCZunc .T........A..T.........C.A..T..T..T..C.................T........T...G..........T AP012100.1_Notropis_telescopus_m ..........A..T........GC.A..T..T..C..C.....C...........T........T...G.T..C.....T AP012101.1_Pimephales_notatus_mi .T........A..T.........C....T..T..T..C.................T........T...G..........T AP012102.1_Pimephales_vigilax_mi .AA.......AA.T.........C.A..T.....T..C.................T........T...G.T..C.....T AP012103.1_Pogonichthys_macrolep .TC.......A..T..C.....C..A........C..C................................T........A AP012106.1_Richardsonius_balteat .TC.......A..T...........A..T..T..C..C................................T......... AP012108.1_Notropis_chrosomus_mi .TC.......A..T........CC.A..T..T..T..T..A.......................T..GG........... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .AA.......AA.T.........C.A..T.....T..C.................T........T...G.T..C.....T Pimephales_vigilax_R1S3_________ .AA.......AA.T.........C.A..T.....T..C.................T........T...G.T..C.....T DQ536429.1_Notropis_stramineus_m .TC.......A..T........CC.A..T..T..T..T.....C...........T..A.....T...G.T.....T..T JX910141.1_Squaliobarbus_curricu .............T.......................A.................T.................C...... KC351187.1_Squaliobarbus_curricu .............T....................A..A.................T.................C...... KT278765.1_Pimephales_promelas_m .T........A..A........CC.C..T.....C..C........C.................T...G........... KT289925.1_Pimephales_promelas_m .T........A..A........CC.T..T.....C..C........C.....G...........T...G........... KT424924.1_Rhinichthys_osculus_m .A..G.....G..A...........A..T..T..C..C............C.............T.....T..C..T... KU200257.1_Chanodichthys_ilishae .T........C..A..............T..T..A..C.......................................... MF972070.1_Siphateles_bicolor_mo ..C....G.................A..T.....C..T........T.......................T......... MG570407.1_Notropis_chalybaeus_v .T.....G..A..A.........C.A..T.....T..T.................T........T...G.T......... MG570408.1_Notropis_bifrenatus_v .T........G..T........CC.A.....T..T..T............C....T........T..GG.T......... MG570413.1_Notropis_heterolepis_ .T........G..T........CC.A..T..T..T..T.................T........T..GG.T........T MG570416.1_Rhinichthys_obtusus_v .TC.......G..T...........A..T..T..C..C....................C...........T......... MG570417.1_Rhinichthys_obtusus_v .TC.......G..T...........A..T..T..C..C....................C...........T......... MG570420.1_Pimephales_notatus_vo .T........A..T.........C.A..T..T..T..C.................T........T...G..........T MG570443.1_Notropis_hudsonius_is .TC.......A..T.........C.A........T..C.................T............G.T......... MG570444.1_Rhinichthys_atratulus .TC.......G..T...........A..T..T..C..C................................T......... MG570445.1_Rhinichthys_atratulus .TC.......G..T...........A..T..T..C..C................................T......... MG570447.1_Luxilus_cornutus_isol .T........G..T.........C.A..T..T..T..T.................T...........GG.T........T MG570449.1_Luxilus_cornutus_isol .T........G..T.........C.A..T..T..T..T.................T...........GG.T........T MG570450.1_Pimephales_notatus_is .T........A..T.........C.A..T..T..T..C.................T........T...G..........T MG570451.1_Notropis_bifrenatus_i .T........G..T........CC.A.....T..T..T............C....T........T..GG.T......... MG570453.1_Exoglossum_maxillingu .TC.......G..T......A....A..T..T..C..T.................T..............T........T MG570454.1_Pimephales_promelas_i .T........A..A........CC.T..T.....C..C........C.....G...........T...G........... MG570455.1_Notropis_atherinoides .T........G..T.........C.A.....T..T..C.................T........T...G.......T... MG570456.1_Notropis_atherinoides .T........G..T.........C.A.....T..T..C.................T........T...G.......T... MG570457.1_Pimephales_notatus_is .T........A..T.........C.A..T..T..T..C.................T........T...G..........T MG570458.1_Pimephales_notatus_is .T........A..T.........C.A..T..T..T..C.................T........T...G..........T MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .TC.......A..T...........A..T..T..T..T..A.......................T..GG.T......... MT364325.1_Hybognathus_amarus_mi .T........A..T.........C.A..T.....T..T..T...........G...........T..GG.T..C.....T MT501368.1_Gila_cypha_isolate_SN .......G.................A..T.....C..T........T.......................T......... MT501369.1_Notropis_simus_pecose .T..G.....A..A.........A.A..T..T..T..T.................T..A.....T..GG.T......... MT501378.1_Hybognathus_amarus_is .T........A..T.........C.A..T.....T..T..T...........G...........T..GG.T..C.....T MT501385.1_Notropis_jemezanus_vo .TC.......G..A.........C.A.....G..T..C..........................T..GG........... MT501391.1_Rhinichthys_osculus_i .A..G.....G..A...........A..T..T..C..C............C..........G..T.....T..C...... MT667239.1_Rhinichthys_osculus_t .A..G.....G..A...........A..T..T..C..C............C..........G..T.....T..C...... MT667242.1_Luxilus_cornutus_vouc .T........G..T.........C.A..T..T..T..T.................T...........GG.T........T MW300340.1_Hybognathus_placitus_ .T........A..T........CC....T.....T..T..........................T..GG....C.....T MW300341.1_Hybognathus_placitus_ .T........A..T........CC....T.....T..T..........................T..GG....C.....T NC_013763.1_Mylocheilus_caurinus .TC.......A..T..C.....C..A..T.....C..C.......................G.....G..T......... NC_033926.1_Opsopoeodus_emiliae_ .T.....C..A..T........A..A..T..A..T..T....................C..G..T...G.T.....T..T NC_037008.1_Notropis_chalybaeus_ .T.....G..A..A.........C.A..T.....T..T.................T........T...G.T......... NC_037009.1_Notropis_heterolepis .T........G..T........CC.A..T..T..T..T.................T........T..GG.T........T NC_037010.1_Rhinichthys_obtusus_ .TC.......G..T...........A..T..T..C..C....................C...........T......... NC_037014.1_Notropis_hudsonius_i .TC.......A..T.........C.A........T..C.................T............G.T......... NC_037015.1_Exoglossum_maxilling .TC.......G..T......A....A..T..T..C..T.................T..............T........T NC_054086.1_Ptychocheilus_lucius .........................A..T.....T..C........T.......................T.....T... NC_054257.1_Gila_cypha_isolate_S .......G.................A..T.....C..T........T.......................T......... NC_054259.1_Gila_nigrescens_isol .......G.....T........A..A..T.....C..T........T.......................T......... NC_054260.1_Hybognathus_amarus_i .T........A..T.........C.A..T.....T..T..T...........G...........T..GG.T..C.....T NC_054262.1_Notropis_jemezanus_v .TC.......G..A.........C.A.....G..T..C..........................T...G........... Pimephales_notatus_R2S3_________ .TC.......G..T......A.CC.A..T..T..T..C.....C....................T...G.T........T Pimephales_tenellus_tenellu_R2S1 ..........A...........CC.A..T..T..T..C........G.....G..T........T...G.T......... Pimephales_tenellus_parvice_R2S2 ..........A.........A.CC.A..T..T..T..C........G.....G..T..C.........G.T......... Pimephales_notatus_R1S1_________ .TC.......G..T......A.CC.A..T..T..T..C.....C....................T...G.T........T MG570452.1_Pimephales_promelas_i .T........A..A........CC.T..T.....C..C........C.....G...........T...G........... MG570452.1_Pimephales_promelas_S .T........A..A........CC.T..T.....C..C........C........T........T...G........... AB626850.1_Megalobrama_terminali CACCTAACAATTAAAGCCATAGGTCATCAATGATACTGAAGCTATGAGTACACAGATTACGAAGATCTGGGCTTCGATTC AP010779.1_Mylocheilus_caurinus_ ...T.......C.....T.....A....................C..A..T.....C........C..A..G..T..C.. AP011215.1_Gila_sp._1460_mitocho .......................A..C.....G...........C....................C..A..A..T..... AP011263.1_Scardinius_erythropht ...........C..G........A..C........T........C.....T..T...........CT.A..A.....C.. AP011267.1_Algansea_lacustris_mi ...T...................G..C........T........C..A..T.....C..T.....C..A..A..T..C.. AP011268.1_Yuriria_alta_mitochon ..............G..T.....A..C........T....................C........C..A..A.....C.. AP011273.1_Hybognathus_nuchalis_ ...T................G..G..C....................A..T.....C........C..A..A..T..... AP011274.1_Couesius_plumbeus_mit ...T.............T.....A..C..G.....T........C..A..T.....C........C..A..G..T..... AP011275.1_Platygobio_gracilis_m .................T.....A..C........T........C..A..T.....C..T.....C..A..A..T..C.. AP011277.1_Erimystax_dissimilis_ ...T....G..C...........A..C........T...........A........C........C.....A..T..C.. AP011279.1_Pimephales_promelas_m ...T...................A..C........T........C..A..T..G..C..T.....C..A..A..T..C.. AP011280.1_Clinostomus_elongatus ...T.G.....C...........A..C........T........C..A..T.....C........C..A..G..T..C.. AP012079.1_Luxilus_chrysocephalu ...T.............T.....A..C........T........C.....T.....C..T.....C..A..A.....C.. AP012080.1_Macrhybopsis_gelida_m ...T...................A...........T...........A..T.....C..T.....C.....A..T..C.. AP012083.1_Notropis_atherinoides ...........C...........A..C..G.....T........C..A.....G..C..T.....C..A..A.....C.. AP012084.1_Notropis_baileyi_mito ...T....T........T.....A..C.....G..T........C..A.....G..C........C.....G.....C.. AP012087.1_Cyprinella_galactura_ ..TT..........G........A.....G.....T.................G.....T........A..G..T..C.. AP012088.1_Hybopsis_lineapunctat ...T.G...........T.....A..C........T.....T..C..A..T.....C..T.....C..A..A.....C.. AP012090.1_Luxilus_cornutus_mito ...T.............T.....A..C.....G..T........C..A..T.....C..T..G..C..A..A.....C.. AP012091.1_Lythrurus_ardens_mito ...T....G........T.....A....................C..A..T.....C..T.....C..A..A..T..C.. AP012092.1_Lythrurus_fumeus_mito ...T.............A.....A.............................G.....T........A..A.....C.. AP012093.1_Lythrurus_lirus_mitoc ...T....G........T.....A..C....................A..T.....C..T.....C..A..A.....C.. AP012094.1_Lythrurus_umbratilis_ ...T.............T.....A....................C..A..T.....C..T.....C..A..A..T..C.. AP012095.1_Macrhybopsis_meeki_mi ...T................G..A..C.............................C..T.....C..A..A..T..C.. AP012097.1_Notropis_bifrenatus_m ...T.............T.....A..C........T........C..A.....G..C..T.....C..A..A..T..... AP012098.1_Pimephales_sp._MCZunc ...T.............T.....A..C........T........C..A..T.....C..T.....CT.A..G..T..C.. AP012100.1_Notropis_telescopus_m ...........C...........A..C........T........C..A..T.....C..T.....C..A..A.....C.. AP012101.1_Pimephales_notatus_mi ...T.............T.....A..C..G.....T........C..A..T.....C..T.....CT.A..G..T..C.. AP012102.1_Pimephales_vigilax_mi ...T.............T.....G..C.................C..A..T.....C........C..A..A..T..C.. AP012103.1_Pogonichthys_macrolep ...T....G..C.....T.....A.....G.................A........C...........A..G..T..C.. AP012106.1_Richardsonius_balteat ...T.......C...........A..C........T........C..A........C........C..A..G..T..C.. AP012108.1_Notropis_chrosomus_mi ...T...................A..C........T........C..A........C..T.....C..A..A........ AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...T.............T.....G..C.................C..A..T.....C........C..A..A..T..C.. Pimephales_vigilax_R1S3_________ ...T.............T.....G..C.................C..A..T.....C........C..A..A..T..C.. DQ536429.1_Notropis_stramineus_m ...T.............T.....A..C........T....................C..T.....C.....A.....C.. JX910141.1_Squaliobarbus_curricu .......................A...........T....................C........C...........C.. KC351187.1_Squaliobarbus_curricu .......................A...........T....................C........C...........C.. KT278765.1_Pimephales_promelas_m ...T.............T.....A..C........T........C..A..T..G..C..T.....C..A..A..T..C.. KT289925.1_Pimephales_promelas_m ...T...................A..C........T........C..A..T..G..C..T.....C..A..A..T..C.. KT424924.1_Rhinichthys_osculus_m ...T.............T.....A..C........T...........A..T.....C........C..A..A..T..C.. KU200257.1_Chanodichthys_ilishae ..T....................A...........T..............T.....C....................C.. MF972070.1_Siphateles_bicolor_mo ....................G..G..C.....G.......................C........C..A..A..T..C.. MG570407.1_Notropis_chalybaeus_v ...T.............T.....A..C....................A...........T.....C..A..A.....C.. MG570408.1_Notropis_bifrenatus_v ...T.............T.....A..C........T........C..A.....G..C..T.....C..A..A..T..... MG570413.1_Notropis_heterolepis_ .................T.....A..C........T...........A..T.....C..T..G..C..A..A..T..C.. MG570416.1_Rhinichthys_obtusus_v ...T.......C..G........A..C........T........C..A........C........C..A..A..T..C.. MG570417.1_Rhinichthys_obtusus_v ...T.......C..G........A..C........T........C..A........C........C..A..A..T..C.. MG570420.1_Pimephales_notatus_vo ...T.............T.....A..C........T........C..A..T.....C..T.....CT.A..G..T..C.. MG570443.1_Notropis_hudsonius_is .......................A..C........T........C..A..T.....C..T.....CT.A..A..T..... MG570444.1_Rhinichthys_atratulus ...T.......C...........A..C........T........C..A..T.....C........CT.A..A..T..C.. MG570445.1_Rhinichthys_atratulus ...T.......C...........A..C........T........C..A..T.....C........CT.A..A..T..C.. MG570447.1_Luxilus_cornutus_isol ...T.............T.....A..C.....G..T........C..A..T.....C..T..G.....A..A.....C.. MG570449.1_Luxilus_cornutus_isol ...T.............T.....A..C.....G..T........C..A..T.....C..T..G.....A..A.....C.. MG570450.1_Pimephales_notatus_is ...T.............T.....A..C........T........C..A..T.....C..T.....CT.A..G..T..C.. MG570451.1_Notropis_bifrenatus_i ...T.............T.....A..C........T........C..A.....G..C..T.....C..A..A..T..... MG570453.1_Exoglossum_maxillingu ...T....G..C...........A..C........T...........A........C........C.....A..T..C.. MG570454.1_Pimephales_promelas_i ...T...................A..C........T........C..A..T..G..C..T.....C..A..A..T..C.. MG570455.1_Notropis_atherinoides ...........C...........A..C..G.....T........C..A.....G..C..T.....C..A..A.....C.. MG570456.1_Notropis_atherinoides ...........C...........A..C..G.....T........C..A.....G..C..T.....C..A..A.....C.. MG570457.1_Pimephales_notatus_is ...T.............T.....A..C........T........C..A..T.....C..T.....CT.A..G..T..C.. MG570458.1_Pimephales_notatus_is ...T.............T.....A..C........T........C..A..T.....C..T.....CT.A..G..T..C.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..TT.......C.....T.....A..C.................C..A..T.....C..T.....C..A..A..T..... MT364325.1_Hybognathus_amarus_mi ...T................G..A..C.....G..............A........C.....G.....A..A........ MT501368.1_Gila_cypha_isolate_SN .......................A..C.....G...........C.....T..............C.....A..T..... MT501369.1_Notropis_simus_pecose ...T...................G...........T....................C..T.....C..A..A.....C.. MT501378.1_Hybognathus_amarus_is ...T................G..A..C.....G..............A........C.....G.....A..A........ MT501385.1_Notropis_jemezanus_vo ........G..C...........A..C..G.....T........C..A.....G..C..T.....C..A..A.....C.. MT501391.1_Rhinichthys_osculus_i ...T...................A..C........T...........A..T.....C..T.....C..A..G..T..C.. MT667239.1_Rhinichthys_osculus_t ...T...................A..C........T...........A..T.....C..T..G..C..A..G..T..C.. MT667242.1_Luxilus_cornutus_vouc ...T.............T.....A..C.....G..T........C..A..T.....C..T..G.....A..A.....C.. MW300340.1_Hybognathus_placitus_ ...T....G........T..G..A..C.................C..A.....G.....T.....CT.A..A........ MW300341.1_Hybognathus_placitus_ ...T....G........T..G..A..C.................C..A.....G.....T.....CT....A........ NC_013763.1_Mylocheilus_caurinus ...T.......C.....T.....A....................C..A..T.....C........C..A..G..T..C.. NC_033926.1_Opsopoeodus_emiliae_ ...T.............T.....C.......................A..T.....C........C..A..A..T..C.. NC_037008.1_Notropis_chalybaeus_ ...T.............T.....A..C....................A...........T.....C..A..A.....C.. NC_037009.1_Notropis_heterolepis .................T.....A..C........T...........A..T.....C..T..G..C..A..A..T..C.. NC_037010.1_Rhinichthys_obtusus_ ...T.......C..G........A..C........T........C..A........C........C..A..A..T..C.. NC_037014.1_Notropis_hudsonius_i .......................A..C........T........C..A..T.....C..T.....CT.A..A..T..... NC_037015.1_Exoglossum_maxilling ...T....G..C...........A..C........T...........A........C........C.....A..T..C.. NC_054086.1_Ptychocheilus_lucius .......................A..C.....G...........C...........C........C..A..A..T..... NC_054257.1_Gila_cypha_isolate_S .......................A..C.....G...........C.....T..............C.....A..T..... NC_054259.1_Gila_nigrescens_isol .......................A..C.....G...........C...........C.....G..C..A..A..T..C.. NC_054260.1_Hybognathus_amarus_i ...T................G..A..C.....G..............A........C.....G.....A..A........ NC_054262.1_Notropis_jemezanus_v ........G..C...........A..C..G.....T........C..A.....G..C..T.....C..A..A.....C.. Pimephales_notatus_R2S3_________ ...T.............T.....A..C........T....................C..T.....CT.A..A..T..C.. Pimephales_tenellus_tenellu_R2S1 ...T.G...........T.....A..C.................C..A..T........T.....C..A..A..T..C.. Pimephales_tenellus_parvice_R2S2 ...T.G...........T.....A..C.................C..A..T..C.....T.....C..A..A..T..C.. Pimephales_notatus_R1S1_________ ...T.............T.....A..C........T....................C..T.....CT.A..A..T..C.. MG570452.1_Pimephales_promelas_i ...T...................A..C........T........C..A..T..G..C..T.....C..A..A..T..C.. MG570452.1_Pimephales_promelas_S ...T...................A..C........T........C..A..T..G..C..T.....C..A..A..T..C.. AB626850.1_Megalobrama_terminali CTACATAATCCCAACCCAGGACCTCACACCAGGCCAATTCCGACTCCTAGAAACAGACCACCGAATAGTAGTCCCCATAG AP010779.1_Mylocheilus_caurinus_ ..................A....................T...........G.................G.....G.... AP011215.1_Gila_sp._1460_mitocho .........T..G.....A......................................T..T...........T..A.... AP011263.1_Scardinius_erythropht .........T........A..T..T..C...........T..G.....G.................G.....T..A..G. AP011267.1_Algansea_lacustris_mi G..T.....T..C.....A........G..G..A.....T...........G....................T..A.... AP011268.1_Yuriria_alta_mitochon A..T.....T..T.....A..T.....G.....G.....T.....T.......................G..T..G.... AP011273.1_Hybognathus_nuchalis_ A..T.....T..C..T..A..T........C..T.....T.....T.................G.....G..T..A.... AP011274.1_Couesius_plumbeus_mit ......GG..........A.......................C........G....................T..A..G. AP011275.1_Platygobio_gracilis_m A..T.....T..T..T..A.....T..G.....A..G..T................................T..A.... AP011277.1_Erimystax_dissimilis_ G..............T..A....................T.....T.............................A.... AP011279.1_Pimephales_promelas_m A...........C..T..A..T..T..G..C..A...........TT..........T..............T..T..G. AP011280.1_Clinostomus_elongatus ......G..T.....T..A.....T.....G.....G..T...........G..G..T..............T..A.... AP012079.1_Luxilus_chrysocephalu A........T..T..T..A..T...........A.....T......T.......T.................T..A.... AP012080.1_Macrhybopsis_gelida_m A..T........G..G..A.....TT.......G.....T.................TA................A.... AP012083.1_Notropis_atherinoides A........T..C..T..A..T..T..G.....G...........T.....G..G.....T...........T..A.... AP012084.1_Notropis_baileyi_mito A........T..C..T..A..T...........A.....T.....T..........................T..G.... AP012087.1_Cyprinella_galactura_ A........T..C..T..A..T.....G.....A.....T.....T.....G..G.....T..T........T..A.... AP012088.1_Hybopsis_lineapunctat A........T..T..T..A..T.....G..C..G.....T.....T...........T.................A.... AP012090.1_Luxilus_cornutus_mito A........T..T..T..A..T...........A.....T.....T.....G.....T..............T..G.... AP012091.1_Lythrurus_ardens_mito A.....G..T..G..T..A..............G.....T.....T.....G....................T..G..G. AP012092.1_Lythrurus_fumeus_mito A........T..T..T..A..T..T........G..G..T.....T..G..............T........T..A..G. AP012093.1_Lythrurus_lirus_mitoc A..T.....T..G..T..A..............G.....T.....T........G..............G..T..G..G. AP012094.1_Lythrurus_umbratilis_ A.....G..T..G..T..A..............G.....T.....T.....G....................T..G..G. AP012095.1_Macrhybopsis_meeki_mi A..T..G........G..A.....TT.......A.....T............G....TA.............T..A.... AP012097.1_Notropis_bifrenatus_m G...........T..T..A..T..T..G.....T.....T.....T..............T..............A.... AP012098.1_Pimephales_sp._MCZunc A.....G..T..C..T..A..T...........G.....T..C..T.....G....................T..A..G. AP012100.1_Notropis_telescopus_m A........T..T..T..A..T..T..G.....G..G..T.....T..........................T..T.... AP012101.1_Pimephales_notatus_mi A.....G..T..C..T..A..T...........A.....T..C..T.....G....................T..A..G. AP012102.1_Pimephales_vigilax_mi A..T...........T..A..T..T..............T.....TA....G....................T..A.... AP012103.1_Pogonichthys_macrolep ......G...........A......GT............T.....T.....G.................G.....A.... AP012106.1_Richardsonius_balteat ......G.....G.....A.....T........G................................G........A.... AP012108.1_Notropis_chrosomus_mi A........T..C..T..A..T...........A.....T.....T..........................T..A.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ A..T...........T..A..T..T..............T.....TA....G....................T..A.... Pimephales_vigilax_R1S3_________ A..T...........T..A..T..T..............T.....TA....G....................T..A.... DQ536429.1_Notropis_stramineus_m .........T..T..T.....T..T..G..C..G...........G...........T..............T....... JX910141.1_Squaliobarbus_curricu ............C.....A.....T.................T...........G......................... KC351187.1_Squaliobarbus_curricu ............C.....A.....T.................T...........G......................... KT278765.1_Pimephales_promelas_m A...........C..T..A..T..T.....C..A...........TT...................G........T.... KT289925.1_Pimephales_promelas_m A...........C..T..A..T..T..G..C..A...........TT..........T..............T..T..G. KT424924.1_Rhinichthys_osculus_m A..T.....T.....T..A........C..G........T.....T.....G..G........T........T..A.... KU200257.1_Chanodichthys_ilishae ............G.....A.....T......................................G................ MF972070.1_Siphateles_bicolor_mo ...T..............A..............T........G..T.....G........T...........T..A.... MG570407.1_Notropis_chalybaeus_v A........T..C..T..A..T...........A.....T.....T........G.................T..A.... MG570408.1_Notropis_bifrenatus_v G...........T..T..A..T..T..G..C........T.....T..............T..............A.... MG570413.1_Notropis_heterolepis_ G...........C..T..A..T..T.....C..A.....T.....T..G.......................T..A..G. MG570416.1_Rhinichthys_obtusus_v A........T........A........C..C........T...........G.......................G.... MG570417.1_Rhinichthys_obtusus_v A........T........A........C..C........T...........G.......................G.... MG570420.1_Pimephales_notatus_vo A.....G..T..C..T..A..T...........G.....T..C..T.....G....................T..A..G. MG570443.1_Notropis_hudsonius_is A..T.....T..C..T..A.....T........G..G..T.................T..............G..A..G. MG570444.1_Rhinichthys_atratulus A..T..G..T........A........C..C........T..........................G.....T..G..G. MG570445.1_Rhinichthys_atratulus A..T..G..T........A........C..C........T..........................G.....T..G..G. MG570447.1_Luxilus_cornutus_isol A........T..T..T..A..T........G..A.....T.....T.....G.....T..............T..G.... MG570449.1_Luxilus_cornutus_isol A........T..T..T..A..T........G..A.....T.....T.....G.....T..............T..G.... MG570450.1_Pimephales_notatus_is A.....G..T..C..T..A..T...........G.....T..C..T.....G....................T..A..G. MG570451.1_Notropis_bifrenatus_i G...........T..T..A..T..T..G..C........T.....T..............T..............A.... MG570453.1_Exoglossum_maxillingu G..............T..A....................T.....T.............................A.... MG570454.1_Pimephales_promelas_i A...........C..T..A..T..T..G..C..A...........TT..........T..............T..T..G. MG570455.1_Notropis_atherinoides A........T..C..T..A..T..T..G.....A...........T.....G..G.....T...........T..A.... MG570456.1_Notropis_atherinoides A........T..C..T..A..T..T..G.....G...........T.....G..G.....T...........T..A.... MG570457.1_Pimephales_notatus_is A.....G..T..C..T..A..T...........G.....T..C..T.....G....................T..A..G. MG570458.1_Pimephales_notatus_is A.....G..T..C..T..A..T...........G.....T..C..T.....G....................T..A..G. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v A...........C..T..A..T..T........G.....T.....T.................G........T..A.... MT364325.1_Hybognathus_amarus_mi A........T..T..T..A..T........C..T.....T.....T.......................G..T..G.... MT501368.1_Gila_cypha_isolate_SN .........T................................G.................T...........T..A.... MT501369.1_Notropis_simus_pecose A..T.....T..C..T..A..............A...........T..........................T..A.... MT501378.1_Hybognathus_amarus_is A........T..T..T..A..T........C..T.....T.....T...........T...........G..T..G.... MT501385.1_Notropis_jemezanus_vo A........T..C..T..A..T..T..G.....G...........T..............T...........T..A.... MT501391.1_Rhinichthys_osculus_i A..T.....T.....T..A........G..G........T.................T.....G...........A.... MT667239.1_Rhinichthys_osculus_t A..T.....T.....T..A........G..G.....G..T.................T.....G...........A.... MT667242.1_Luxilus_cornutus_vouc A........T..T..T..A..T........G..A.....T.....T.....G.....T..............T..G.... MW300340.1_Hybognathus_placitus_ G...........C..T..A..T.....G.....T..G..T.....T........G.................T..A.... MW300341.1_Hybognathus_placitus_ G...........C..T..A..T.....G.....T..G..T.....T........G.................T..A.... NC_013763.1_Mylocheilus_caurinus ..................A....................T...........G.................G.....G.... NC_033926.1_Opsopoeodus_emiliae_ A..T...G....C..T..A..T..T..C.....A...........T.....G.....T..T..T..G..G.....A.... NC_037008.1_Notropis_chalybaeus_ A........T..C..T..A..T...........A.....T.....T........G.................T..A.... NC_037009.1_Notropis_heterolepis G...........C..T..A..T..T.....C..A.....T.....T..G.......................T..A..G. NC_037010.1_Rhinichthys_obtusus_ A........T........A........C..C........T...........G.......................G.... NC_037014.1_Notropis_hudsonius_i A..T.....T..C..T..A.....T........G..G..T.................T..............G..A..G. NC_037015.1_Exoglossum_maxilling G..............T..A....................T.....T.............................A.... NC_054086.1_Ptychocheilus_lucius .........T..G.....A...........C...........G.................T...........T..A.... NC_054257.1_Gila_cypha_isolate_S .........T................................G.................T...........T..A.... NC_054259.1_Gila_nigrescens_isol ...T.....T..G.............................G.................T...........T..A.... NC_054260.1_Hybognathus_amarus_i A........T..T..T..A..T........C..T.....T.....T...........T...........G..T..G.... NC_054262.1_Notropis_jemezanus_v A........T..C..T..A..T..T........G...........T..............T...........T..A.... Pimephales_notatus_R2S3_________ A.....G.....C..T..A..T...........G.....T..C..T...........T..T..............A..G. Pimephales_tenellus_tenellu_R2S1 A...........C..T..A..T...........A...........T..............T.....G.....T..A.... Pimephales_tenellus_parvice_R2S2 A...........T..T..A..T...........A...........T..............T..G..G.....T..A.... Pimephales_notatus_R1S1_________ A...........C..T..A..T...........G.....T..C..T...........T..T..............A..G. MG570452.1_Pimephales_promelas_i A...........C..T..A..T..T..G..C..A...........TT..........T..............T..T..G. MG570452.1_Pimephales_promelas_S A...........C..T..A..T..T..G..C..A...........TT..........T..............T..T..G. AB626850.1_Megalobrama_terminali AATCACCAGTTCGTGTCCTAGTATCTGCCGAAGATGTATTACACTCTTGAGCCGTTCCGTCTCTGGGCGTAAAAATAGAC AP010779.1_Mylocheilus_caurinus_ ....C.....C.....G.....G..C..T.....C........T.....G..T..C..A.....A..T........G... AP011215.1_Gila_sp._1460_mitocho ................G........A...........G.................C..A.....A..T.....G.....T AP011263.1_Scardinius_erythropht .G..............TT....G..C..A.....C..G.................C..A...T.A..T............ AP011267.1_Algansea_lacustris_mi ........A.......T........C..T.....C...........C......A....A.....T..T...........T AP011268.1_Yuriria_alta_mitochon ........A.......TT.......C........C..G........C......A.C..A.....T..T............ AP011273.1_Hybognathus_nuchalis_ ........A.......T........C.....G..C...........C......A....A.....T..T..T......... AP011274.1_Couesius_plumbeus_mit .G..............G..G.....C..T..G........G........G.....C..A...T.A.....T......... AP011275.1_Platygobio_gracilis_m .G......A.......T........C..T.................A......A.C..A.....C..T............ AP011277.1_Erimystax_dissimilis_ ........A.......T........C........C.................TA.C..A.....T..T........G... AP011279.1_Pimephales_promelas_m ........A.......T........C..T..G......C.......C......A.C..A.....T..T...........T AP011280.1_Clinostomus_elongatus ................T........C..T.....C...C.T...........A..C........T............... AP012079.1_Luxilus_chrysocephalu ........A................C.....G..C.....G............A.C..A.....C..T............ AP012080.1_Macrhybopsis_gelida_m .G......A.......TT.......CT.T.........C.............TA....A.....T..T............ AP012083.1_Notropis_atherinoides .......CA.......T.....G..C..A..G..C..T........C.....TA.C..A.....T..T...........T AP012084.1_Notropis_baileyi_mito ........A.......T.....G........G..C.....G.....C......A.C..A..C..C..T..T........T AP012087.1_Cyprinella_galactura_ ........A.C.....G..G.....C............C.G.....C.....TA.C........C..T...........T AP012088.1_Hybopsis_lineapunctat ........A....A..T..............G..C.....G.....C......A.C..A..G..C..T............ AP012090.1_Luxilus_cornutus_mito ........A.......T........C........C..................A.C..A.....C..T............ AP012091.1_Lythrurus_ardens_mito .G......A.......T........C..T..G..............C......A.C..A.....C..G............ AP012092.1_Lythrurus_fumeus_mito ........A.......T........C.....G..C...........C......A.C..A.....T..A............ AP012093.1_Lythrurus_lirus_mitoc .G......A.......T........C..T.....C...........C......A.C..A..C..C..G............ AP012094.1_Lythrurus_umbratilis_ .G......A.......T........C..T.................C......A.C..A..C..C..G............ AP012095.1_Macrhybopsis_meeki_mi .G......A.......T.....G..CT.T.....C.................TA.C..A.....C..T............ AP012097.1_Notropis_bifrenatus_m ....G...A.......T.....G..C..............G.....C......A.C..A..C..C..T............ AP012098.1_Pimephales_sp._MCZunc ........A.......T........C.....G........G.....C......A.C..A.....T..T...........T AP012100.1_Notropis_telescopus_m .G......A.............G..C.....G..C...........C......A.C..A..G..C..T..G......... AP012101.1_Pimephales_notatus_mi ........A.......T........C.....G........G.....C......A.C..A.....T..T...........T AP012102.1_Pimephales_vigilax_mi ........A........T....G..C..............G..T..C...A..A.C.....A..C..T..G........T AP012103.1_Pogonichthys_macrolep .G..C...........G.....G..C..T.....C.....G...........T.....A........T........G... AP012106.1_Richardsonius_balteat .G.......................C..T.....C.................T..C..A.....T..T............ AP012108.1_Notropis_chrosomus_mi ........A.C.....T.....G..C.....G..C...C.......C......A....A.....T..T..T..G...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ........A........T....G..C..............G..T..C...A..A.C.....A..C..T..G........T Pimephales_vigilax_R1S3_________ ........A........T....G..C..............G..T..C...A..A.C.....A..C..T..G........T DQ536429.1_Notropis_stramineus_m ........A.......T..G.....C..T..G..C...C....T..C......A....A..G..T..T............ JX910141.1_Squaliobarbus_curricu ......................G...................................A..C..A...........G... KC351187.1_Squaliobarbus_curricu ......................G...................................A..C..A...........G... KT278765.1_Pimephales_promelas_m ........A.......T........C..T..G......C.......C......A.C..A.....T..T...........T KT289925.1_Pimephales_promelas_m ........A.......T........C..T..G......C.......C......A.C..A.....T..T.....G.....T KT424924.1_Rhinichthys_osculus_m ........A.......T..G..G..C..T........G........A...A..A....A.....T..T........G... KU200257.1_Chanodichthys_ilishae ..............................................C........C..A...T.A............... MF972070.1_Siphateles_bicolor_mo .......G..C.....A.....G..A.................T...........C..A.....A..T............ MG570407.1_Notropis_chalybaeus_v .......GA.......TT.......C.....G..C.....G.....C.....TA.C..A.....C..T..T......... MG570408.1_Notropis_bifrenatus_v ....G...A.......T.....G..C..............G.....C......A.C..A..C..C..T............ MG570413.1_Notropis_heterolepis_ .G......A.......T........C........C.....G.....A......A.C..A..C..C..T.....G...... MG570416.1_Rhinichthys_obtusus_v ........A.......T........C..T.....C..............G...A.C..C.....C..T...........T MG570417.1_Rhinichthys_obtusus_v ........A.......T........C..T.....C..............G...A.C..C.....C..T...........T MG570420.1_Pimephales_notatus_vo ........A.......T........C.....G........G.....C......A.C..A.....T..T...........T MG570443.1_Notropis_hudsonius_is .G..G...A....G.....C.....C........C.....G.....C......A.C..C.....C..T...........T MG570444.1_Rhinichthys_atratulus ........A................C..T.....C..................A.C..C.....C..T..C.....G..T MG570445.1_Rhinichthys_atratulus ........A................C..T.....C..................A.C..C.....C..T..C.....G..T MG570447.1_Luxilus_cornutus_isol ........A.......T.....G..C........C..................A.C..A.....C..T............ MG570449.1_Luxilus_cornutus_isol ........A.......T.....G..C........C..................A.C..A.....C..T............ MG570450.1_Pimephales_notatus_is ........A.......T........C.....G........G.....C......A.C..A.....T..T...........T MG570451.1_Notropis_bifrenatus_i ....G...A.......T.....G..C..............G.....C......A.C..A..C..C..T............ MG570453.1_Exoglossum_maxillingu ........A.......T........C........C.................TA.C..A.....T..T........G... MG570454.1_Pimephales_promelas_i ........A.......T........C..T..G......C.......C......A.C..A.....T..T.....G.....T MG570455.1_Notropis_atherinoides .......CA.......T.....G..C..A..G..C..T........C.....TA.C..A.....T..T............ MG570456.1_Notropis_atherinoides .......CA.......T.....G..C..A..G..C..T........C.....TA.C..A.....T..T...........T MG570457.1_Pimephales_notatus_is ........A.......T........C.....G........G.....C......A.C..A.....T..T...........T MG570458.1_Pimephales_notatus_is ........A.......T........C.....G........G.....C......A.C..A.....T..T...........T MK421554.1_Parabramis_pekinensis ................................................................A............... MT333789.1_Notropis_lutipinnis_v .......GA.C...........G..C.....G..C.....G.....A......A.C..A..G..C..T..T......... MT364325.1_Hybognathus_amarus_mi .......TA.......T..G.....C.....G..C.....G.....C......A....A.....C..T..T......... MT501368.1_Gila_cypha_isolate_SN .G..............G........A........C.....G...........T..C..A..C..A..T............ MT501369.1_Notropis_simus_pecose .G......A.......T.....G..C........C..................A.C..A.....T..T..T......... MT501378.1_Hybognathus_amarus_is .......TA.......T..G..G..C.....G..C.....G.....C......A....A.....C..T..T......... MT501385.1_Notropis_jemezanus_vo .......CA.......T........C.....G..C..TC.......C.....TA.C..A.....T..T............ MT501391.1_Rhinichthys_osculus_i .G......A.......T.....G..C..T.....C..................A....A.....T..T...........T MT667239.1_Rhinichthys_osculus_t .G......A.......T.....G..C..T.....C..................A....A.....T..T...........T MT667242.1_Luxilus_cornutus_vouc ........A.......T.....G..C........C..................A.C..A.....C..T............ MW300340.1_Hybognathus_placitus_ ........A.......T........C.....G..C.....G.....C......A.C..A.....C..T...........T MW300341.1_Hybognathus_placitus_ .G......A.......T........C.....G..C.....G.....C......A.C..A.....C..T...........T NC_013763.1_Mylocheilus_caurinus ....C.....C.....G.....G..C..T.....C........T.....G..T..C..A.....A..T........G... NC_033926.1_Opsopoeodus_emiliae_ ....C...A....A..G..G.....G..T..G..............C.....A..C..A.....T..T.....G..G..T NC_037008.1_Notropis_chalybaeus_ .......GA.......TT.......C.....G..C.....G.....C.....TA.C..A.....C..T..T......... NC_037009.1_Notropis_heterolepis .G......A.......T........C........C.....G.....A......A.C..A..C..C..T.....G...... NC_037010.1_Rhinichthys_obtusus_ ........A.......T........C..T.....C..............G...A.C..C.....C..T...........T NC_037014.1_Notropis_hudsonius_i .G..G...A....G.....C.....C........C.....G.....C......A.C..C.....C..T...........T NC_037015.1_Exoglossum_maxilling ........A.......T........C........C.................TA.C..A.....T..T........G... NC_054086.1_Ptychocheilus_lucius ................G........A.................T...........C..A.....A..T............ NC_054257.1_Gila_cypha_isolate_S .G..............G........A........C.....G...........T..C..A..C..A..T............ NC_054259.1_Gila_nigrescens_isol ....G...........G........A...........G.................C..A.....A..T...........T NC_054260.1_Hybognathus_amarus_i .......TA.......T..G..G..C.....G..C.....G.....C......A....A.....C..T..T......... NC_054262.1_Notropis_jemezanus_v ....G..CA.......T........C.....G..C..TC.......C.....TA.C..A.....T..T............ Pimephales_notatus_R2S3_________ ........A.......T........C..............G.....C.....TA.C..A.....T..T...........T Pimephales_tenellus_tenellu_R2S1 ........A.C.....G.....G..C.....G..............C.....TA.C..A.....C..T...........T Pimephales_tenellus_parvice_R2S2 ........A.C.....G.....G..C.....G....................TA.C..A.....C..T...........T Pimephales_notatus_R1S1_________ ........A.......T........C..............G.....C.....TA.C..A.....T..T...........T MG570452.1_Pimephales_promelas_i ........A.......T........C..T..G......C.......C......A.C..A.....T..T.....G.....T MG570452.1_Pimephales_promelas_S ........A.......T........C..T..G......C.......C......A.C..A.....T..T...........T AB626850.1_Megalobrama_terminali GCAGTGCCAGGCCGACTAAACCAAACTGCCTTCATTGCCTCACGCCCAGGTGTGTTCTACGGACAGTGTTCTGAAATCTG AP010779.1_Mylocheilus_caurinus_ .....A..T..G...T................T..C.................A..T..T.....A..C........... AP011215.1_Gila_sp._1460_mitocho .....T..C..A...T.G..............T....................A..T..T..C..A..C........... AP011263.1_Scardinius_erythropht ..G..A..C..G...T....T................................A..T..T.....A..C........... AP011267.1_Algansea_lacustris_mi ........T..A...T....T...........T...........T.....C..A..T........A..C........... AP011268.1_Yuriria_alta_mitochon ..G..A..T..G...T....T...........T....................A..T........A..C........T.. AP011273.1_Hybognathus_nuchalis_ .....A..T..A...T....T...........T...........A........A..T..T.....A..C........T.. AP011274.1_Couesius_plumbeus_mit .....A..C...............G................C.......................A..C.....G..... AP011275.1_Platygobio_gracilis_m ..G..A..C..G...T....T...........T....................A..T..T.....A..C........... AP011277.1_Erimystax_dissimilis_ ..G.....C..G...T....T...........T..C.................A..T..T.....A..C........... AP011279.1_Pimephales_promelas_m .....A..T..A...T....T...........T...........A..C.....A..T........A..C........T.. AP011280.1_Clinostomus_elongatus .....A.....A...T.G..............T....................A..T..T.....A..C........T.. AP012079.1_Luxilus_chrysocephalu ........T..A...T.G..T................................A..T........A..C..C.....T.. AP012080.1_Macrhybopsis_gelida_m ..G.....C..T...T....T...........T........T...........A..T..T.....A..C........... AP012083.1_Notropis_atherinoides ..G.....T..A..GT....T...........T.................C..A..T........A..C........T.. AP012084.1_Notropis_baileyi_mito ........T..A...T................T...........A...........T..T.....A..C........T.. AP012087.1_Cyprinella_galactura_ .....C..T..A...........G........T...........G........C...........A..C........T.. AP012088.1_Hybopsis_lineapunctat .....A..T..A...T....T...........T...........A........A.....T.....A..C........... AP012090.1_Luxilus_cornutus_mito ........T..A...T....T...........T....................A..T..T.....A..C..C........ AP012091.1_Lythrurus_ardens_mito ..G..A..T..A...T....T...........T....................A..T..T.....A..C.....G..T.. AP012092.1_Lythrurus_fumeus_mito ........T..G...T....T................................A..T..T.....A..C........T.. AP012093.1_Lythrurus_lirus_mitoc ..G.....C..A...T....T........T..T....................A..T..T.....A..C.....G..T.. AP012094.1_Lythrurus_umbratilis_ ..G..A..C..A...T....T...........T....................A..T..T.....A..C.....G..T.. AP012095.1_Macrhybopsis_meeki_mi .....A..C..A...T....T........T..T....................A..T..T.....A..C........... AP012097.1_Notropis_bifrenatus_m ..G..A..C..A...T....T................................A..T..T.....A..C........T.. AP012098.1_Pimephales_sp._MCZunc .....A..T..A...T....T...........T...........A..C.....A..T..T.....A..C........T.. AP012100.1_Notropis_telescopus_m ........T..A...T....T.......................A........A.....T.....A...........T.. AP012101.1_Pimephales_notatus_mi .....A..T..A...T....T...........T...........A..C.....A..T..T.....A..C........T.. AP012102.1_Pimephales_vigilax_mi .....A..C..G...T....T...........T...........A..C.....A.....T..C..A..C........T.. AP012103.1_Pogonichthys_macrolep .....A..T..G...T....T...........T....................A..T..T.....A..C........... AP012106.1_Richardsonius_balteat ...........A...T................T....................A..T..T.....A..C........T.. AP012108.1_Notropis_chrosomus_mi ........C..A...T....T...........T...........A.....C..A..T........A..C........T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .....A..C..G...T....T...........T...........A..C.....A.....T..C..A..C........T.. Pimephales_vigilax_R1S3_________ .....A..C..G...T....T...........T...........A..C.....A.....T..C..A..C........T.. DQ536429.1_Notropis_stramineus_m .....A..T..A...T....T...........T...........A........T...........A..C........T.. JX910141.1_Squaliobarbus_curricu .....A.....A....................T................................A.............. KC351187.1_Squaliobarbus_curricu .....A.....A....................T................................A.............. KT278765.1_Pimephales_promelas_m .....A..T..A...T....T...........T...........A..C.....A..T..T.....A..C........T.. KT289925.1_Pimephales_promelas_m .....A..T..A...T....T...........T...........A..C.....A..T........A..C........T.. KT424924.1_Rhinichthys_osculus_m ........C..A...T................T.....T..............A..T..T.....A..C.....G..... KU200257.1_Chanodichthys_ilishae ........................................................T........A..C........T.. MF972070.1_Siphateles_bicolor_mo .....T..C..A...T....T...........T..C....................T..T..G..A..C........... MG570407.1_Notropis_chalybaeus_v ........C..A...T................T...........A........A..T........A..C........T.. MG570408.1_Notropis_bifrenatus_v ..G..A..C..A...T....T................................A..T..T.....A..C........T.. MG570413.1_Notropis_heterolepis_ ........T..A...T....T...........T....................A..T..T.....A..C........T.. MG570416.1_Rhinichthys_obtusus_v ........T..G...T................T..C.....G...........A.....T.....A..C..C..G..... MG570417.1_Rhinichthys_obtusus_v ........T..G...T................T..C.....G...........A.....T.....A..C..C..G..... MG570420.1_Pimephales_notatus_vo .....A..T..A...T....T...........T...........A..C.....A..T..T.....A..C........T.. MG570443.1_Notropis_hudsonius_is ........T..T........T..G..............T........G.....A..T..T.....A..C........... MG570444.1_Rhinichthys_atratulus .....A..T..G...T................T..C.................A..T..T.....A..C..C..G..... MG570445.1_Rhinichthys_atratulus .....A..T..G...T................T..C.................A..T..T.....A..C..C..G..... MG570447.1_Luxilus_cornutus_isol ..G.....T..A...T....T...........T....................A..T........A..C..C........ MG570449.1_Luxilus_cornutus_isol ..G.....T..A...T....T...........T....................A..T........A..C..C........ MG570450.1_Pimephales_notatus_is .....A..T..A...T....T...........T...........A..C.....A..T..T.....A..C........T.. MG570451.1_Notropis_bifrenatus_i ..G..A..C..A...T....T................................A..T..T.....A..C........T.. MG570453.1_Exoglossum_maxillingu ..G.....C..G...T....T...........T..C.................A..T..T.....A..C........... MG570454.1_Pimephales_promelas_i ..G..A..T..A...T....T...........T...........A..C.....A..T........A..C........T.. MG570455.1_Notropis_atherinoides ..G.....T..A..GT....T...........T.................C..A..T........A..C........T.. MG570456.1_Notropis_atherinoides ..G.....T..A..GT....T...........T.................C..A..T........A..C........T.. MG570457.1_Pimephales_notatus_is .....A..T..A...T....T...........T...........A..C.....A..T..T.....A..C........T.. MG570458.1_Pimephales_notatus_is .....A..T..A...T....T...........T...........A..C.....A..T..T.....A..C........T.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ........C..A...T....T...........T...........A........A..T........A..C........T.. MT364325.1_Hybognathus_amarus_mi .....A..T..A...T....T...........T...........A........A..T........A..C........T.. MT501368.1_Gila_cypha_isolate_SN .....T..C..A...T................T..C.................A..T..T..C..A..C........... MT501369.1_Notropis_simus_pecose .....A..C..A...T....T.......................A..G.....A..T........A..C..A.....T.. MT501378.1_Hybognathus_amarus_is .....A..T..A...T....T...........T...........A........A..T........A..C........T.. MT501385.1_Notropis_jemezanus_vo ..G.....T..A..GT....T...........T.................C..A..T...........C........T.. MT501391.1_Rhinichthys_osculus_i ..G.....T..G...T...................C..T..............A..T...........C........... MT667239.1_Rhinichthys_osculus_t ..G.....T..G...T...................C..T..G...........A..T...........C........... MT667242.1_Luxilus_cornutus_vouc ..G.....T..A...T....T...........T....................A..T........A..C..C........ MW300340.1_Hybognathus_placitus_ ..G..A..T..A...T....T...........T...........A...........T........A..C........T.. MW300341.1_Hybognathus_placitus_ ..G..A..T..A...T....T...........T...........A...........T........A..C........T.. NC_013763.1_Mylocheilus_caurinus .....A..T..G...T................T..C.................A..T..T.....A..C........... NC_033926.1_Opsopoeodus_emiliae_ ..C..T.....G..GT....T...........T...A.......G..C.....A..T..T..T..A...........T.. NC_037008.1_Notropis_chalybaeus_ ........C..A...T................T...........A........A..T........A..C........T.. NC_037009.1_Notropis_heterolepis ........T..A...T....T...........T....................A..T..T.....A..C........T.. NC_037010.1_Rhinichthys_obtusus_ ........T..G...T................T..C.....G...........A.....T.....A..C..C..G..... NC_037014.1_Notropis_hudsonius_i ........T..T........T..G..............T........G.....A..T..T.....A..C........... NC_037015.1_Exoglossum_maxilling ..G.....C..G...T....T...........T..C.................A..T..T.....A..C........... NC_054086.1_Ptychocheilus_lucius .....T..C..A...T................T..C.................A..T..T..C..A..C........... NC_054257.1_Gila_cypha_isolate_S .....T..C..A...T................T..C.................A..T..T..C..A..C........... NC_054259.1_Gila_nigrescens_isol .....T..C..G...T................T....................A..T.....C..A..C........... NC_054260.1_Hybognathus_amarus_i .....A..T..A...T....T...........T...........A........A..T........A..C........T.. NC_054262.1_Notropis_jemezanus_v ..G.....T..A..GT....T...........T.................C..A..T...........C........T.. Pimephales_notatus_R2S3_________ .....A..T..A...T....T...........T...........A..T.....A..T........A..C........... Pimephales_tenellus_tenellu_R2S1 ........C..A...T....T...........T...........A..C.....A.....T.....A..C........T.. Pimephales_tenellus_parvice_R2S2 ........C..G...T....T...........T...........A..C.....A.....T.....A..C........T.. Pimephales_notatus_R1S1_________ .....A..T..A...T....T...........T...........A..T.....A..T........A..C........... MG570452.1_Pimephales_promelas_i .....A..T..A...T....T...........T...........A..C.....A..T........A..C........T.. MG570452.1_Pimephales_promelas_S .....A..T..A...T....T...........T...........A..C.....A..T........A..C........T.. AB626850.1_Megalobrama_terminali CGGGGCAAACCACAGCTTTATGCCCATTGTAGTTGAAGCAGTCCCACTAGAGCATTTCGAGAGCTGATCCTCATTAATAC AP010779.1_Mylocheilus_caurinus_ T..T..C..............A..T..C..G........T...........A........A..................T AP011215.1_Gila_sp._1460_mitocho T.....C..T...........A..T..............C...........A..C.....A..T................ AP011263.1_Scardinius_erythropht T..A..C...........C.....T........C..G..T...........A..C.....A................... AP011267.1_Algansea_lacustris_mi T..A..C...........C.....T.....G.....G..C..T......A.A..................A......... AP011268.1_Yuriria_alta_mitochon T..A..T.................T.....G........C.........A.A.....T............A..C...... AP011273.1_Hybognathus_nuchalis_ T..A..C.................T..............C......T..A.A.....T............A..C...... AP011274.1_Couesius_plumbeus_mit T..C..C.................T..............T..T........A........A................... AP011275.1_Platygobio_gracilis_m ......C.................T..............C..T......A.A........A.........A..C.G.... AP011277.1_Erimystax_dissimilis_ T.....C...........C.....T........C.....C...........A.....T..A................... AP011279.1_Pimephales_promelas_m ...C..T..T........C..A..T........C.....C......T..A.A.....T............A..C...... AP011280.1_Clinostomus_elongatus ......T........T........T..............C...........A..C..................C....G. AP012079.1_Luxilus_chrysocephalu T.....C..............A..T........C.....C..T.....TA.A.....T............A..C...... AP012080.1_Macrhybopsis_gelida_m T.....C.................T..............C..T......A.A........A.........A..C...... AP012083.1_Notropis_atherinoides T.....C.................T..............C..T..G...A.A.....T........G..TA..C...... AP012084.1_Notropis_baileyi_mito T..A....................T..C........G..T......T..A.A.....T............A..C...... AP012087.1_Cyprinella_galactura_ ...C..C.................T.....G........C......T..A.A..................A......... AP012088.1_Hybopsis_lineapunctat T..C..C..............A..T..............C......T..A.A.....T...G........A.T....... AP012090.1_Luxilus_cornutus_mito T..A..C.................T........C.....C..T.....GA.A.....T............A.CC...... AP012091.1_Lythrurus_ardens_mito T..C....................T..............C..T.....TA.A.....T............A......... AP012092.1_Lythrurus_fumeus_mito T..C..T..............A..T..C...........C..T......A.A..C..T............A..C...... AP012093.1_Lythrurus_lirus_mitoc T..C..C.................T..............C..T.....TA.A.....T............A......... AP012094.1_Lythrurus_umbratilis_ T..C..............C.....T..............C..T.....TA.A.....T............A......... AP012095.1_Macrhybopsis_meeki_mi T..A..C..............A..T..............C..T......A.A........A.........A..C...... AP012097.1_Notropis_bifrenatus_m T..C..T.................T..............C.........A.A.....T............A......... AP012098.1_Pimephales_sp._MCZunc ...C..T.................T..............C..G...T..A.A.....T............A..C.T.... AP012100.1_Notropis_telescopus_m ...C..C..T........C.....T.....G........C......T..A.A.....T............A......... AP012101.1_Pimephales_notatus_mi ...C..T..............A..T..............C..G...T..A.A.....T............A..C.T.... AP012102.1_Pimephales_vigilax_mi ...C..T..T...........A..T............A.C..G...T.GA.A..C..............TA..C...... AP012103.1_Pogonichthys_macrolep T..T..C.................T..C..G........T...........A........A..................T AP012106.1_Richardsonius_balteat T..A..C.................T.....G..C.....T..T........A........A............C...... AP012108.1_Notropis_chrosomus_mi ...A..C...........C.....T..C...........T......T..A.A.....T............A..C...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...C..T..T...........A..T............A.C..G...T.GA.A..C..............TA..C...... Pimephales_vigilax_R1S3_________ ...C..T..T...........A..T............A.C..G...T.GA.A..C..............TA..C...... DQ536429.1_Notropis_stramineus_m T..A..C..............A.................T.....TT..A.A..C..T............A.GC...... JX910141.1_Squaliobarbus_curricu ...................................................A..C..................C.G.... KC351187.1_Squaliobarbus_curricu ...................................................A..C..................C.G.... KT278765.1_Pimephales_promelas_m ...C..T..T........C..A..T........C.....C......T..A.A.....T............A..C...... KT289925.1_Pimephales_promelas_m ...C..T...........C..A..T........C.....C......T..A.A.....T............A..C...... KT424924.1_Rhinichthys_osculus_m T..A..T.................T..............C...........A........A................... KU200257.1_Chanodichthys_ilishae ...A..G..............A....................T........A..C......................... MF972070.1_Siphateles_bicolor_mo T.....T.................T..............C.....G.....A..C..T..A..T.........C...... MG570407.1_Notropis_chalybaeus_v T..A..C..............A..T.....G........T......T..A.A.....T............A..C....G. MG570408.1_Notropis_bifrenatus_v T..C..T.................T..............C.........A.A.....T............A......... MG570413.1_Notropis_heterolepis_ T..A..C..............A..T..............C..T......A.A.....T............A..C.....T MG570416.1_Rhinichthys_obtusus_v ...C..C.................T.....G........C...........A..............G............. MG570417.1_Rhinichthys_obtusus_v ...C..C.................T.....G........C...........A..............G............. MG570420.1_Pimephales_notatus_vo ...C..T.................T..............C..G...T..A.A.....T............A..C.T.... MG570443.1_Notropis_hudsonius_is T..A..C.....T..T.....A..T..C..G........C.........A.A.....T............A..C.T...T MG570444.1_Rhinichthys_atratulus ...C..C...........C.....T..............C..T........A........A................... MG570445.1_Rhinichthys_atratulus ...C..C...........C.....T..............C..T........A........A................... MG570447.1_Luxilus_cornutus_isol T..A..C.................T........C.....C..T.....GA.A.....T............A.CC...... MG570449.1_Luxilus_cornutus_isol T..A..C.................T........C.....C..T.....GA.A.....T............A.CC...... MG570450.1_Pimephales_notatus_is ...C..T.................T..............C..G...T..A.A.....T............A..C.T.... MG570451.1_Notropis_bifrenatus_i T..C..T.................T..............C.........A.A.....T............A......... MG570453.1_Exoglossum_maxillingu T.....C...........C.....T........C.....C...........A.....T..A................... MG570454.1_Pimephales_promelas_i ...C..T...........C..A..T........C.....C......T..A.A.....T............A..C...... MG570455.1_Notropis_atherinoides T..A..C.................T..............C..T..G...A.A.....T........G..TA..C...... MG570456.1_Notropis_atherinoides T.....C.................T..............C..T..G...A.A.....T........G..TA..C...... MG570457.1_Pimephales_notatus_is ...C..T.................T..............C..G...T..A.A.....T............A..C.T.... MG570458.1_Pimephales_notatus_is ...C..T.................T..............C..G...T..A.A.....T............A..C.T.... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v T..A..T.................T..............T......T..A.A.....T............A..C.C.... MT364325.1_Hybognathus_amarus_mi T..A..C.................T..............C......T..A.A.....T............A..C...... MT501368.1_Gila_cypha_isolate_SN ......T..T...........A..T..............C........G..A..C..T..A..T.......T........ MT501369.1_Notropis_simus_pecose T..A..T.................T..C..G.....G..T......T..A.A.....T...G........A..C...... MT501378.1_Hybognathus_amarus_is T..A..C.................T..............C......T..A.A.....T............A..C...... MT501385.1_Notropis_jemezanus_vo T.....C.................T..............C..T..G...A.A..............G..TA......... MT501391.1_Rhinichthys_osculus_i T..A..T.................T.....G........C...........A........A................... MT667239.1_Rhinichthys_osculus_t T..A..T.................T.....G........C...........A........A................... MT667242.1_Luxilus_cornutus_vouc T..A..C.................T........C.....C..T.....GA.A.....T............A.CC...... MW300340.1_Hybognathus_placitus_ T..T..C.................T..............C......T..A.A.....T............A..C....G. MW300341.1_Hybognathus_placitus_ T..T..C.................T..............C......T..A.A.....T............A..C....G. NC_013763.1_Mylocheilus_caurinus T..T..C..............A..T..C..G........T...........A........A..................T NC_033926.1_Opsopoeodus_emiliae_ T..C..C..T..T...........T..C...A.......C......T..C.A.....T.....T......A..C....G. NC_037008.1_Notropis_chalybaeus_ T..A..C..............A..T.....G........T......T..A.A.....T............A..C....G. NC_037009.1_Notropis_heterolepis T..A..C..............A..T..............C..T......A.A.....T............A..C.....T NC_037010.1_Rhinichthys_obtusus_ ...C..C.................T.....G........C...........A..............G............. NC_037014.1_Notropis_hudsonius_i T..A..C.....T..T.....A..T..C..G........C.........A.A.....T............A..C.T...T NC_037015.1_Exoglossum_maxilling T.....C...........C.....T........C.....C...........A.....T..A................... NC_054086.1_Ptychocheilus_lucius T.....C..T........C..A..T..............C...........A..C..T..A..T.........C...... NC_054257.1_Gila_cypha_isolate_S ......T..T...........A..T..............C........G..A..C..T..A..T................ NC_054259.1_Gila_nigrescens_isol ......C..T...........A..T..............C..............C..T..A..T................ NC_054260.1_Hybognathus_amarus_i T..A..C.................T..............C......T..A.A.....T............A..C...... NC_054262.1_Notropis_jemezanus_v T.....C.................T..............C..T..G...A.A..............G..TA......... Pimephales_notatus_R2S3_________ ...C..T..............A..T..............C..G...T..A.A.....T............A..C...... Pimephales_tenellus_tenellu_R2S1 ...C..T..............A..T..............C......T..A.A.....T............A..C...... Pimephales_tenellus_parvice_R2S2 ...C.................A..T..............C......T..A.A.....T............A..C...... Pimephales_notatus_R1S1_________ ...C..T..............A..T..............C..G...T..A.A.....T............A..C...... MG570452.1_Pimephales_promelas_i ...C..T...........C..A..T........C.....C......T..A.A.....T............A..C...... MG570452.1_Pimephales_promelas_S ...C..T..T........C..A..T........C.....C......T..A.A.....T............A......... AB626850.1_Megalobrama_terminali TAGAAGACGCCTCACTAGAAAGCTAATTATTGGACAAAGCGTTGGCCTTTTAAGCCAAAGTTTGGTGCCTACCGACCACC AP010779.1_Mylocheilus_caurinus_ ...................................................................A............ AP011215.1_Gila_sp._1460_mitocho ...................................................................A............ AP011263.1_Scardinius_erythropht ...................................................................A............ AP011267.1_Algansea_lacustris_mi ..................G..........CC................................................. AP011268.1_Yuriria_alta_mitochon ................................................................................ AP011273.1_Hybognathus_nuchalis_ ..................G............................................................. AP011274.1_Couesius_plumbeus_mit ...................................................................A............ AP011275.1_Platygobio_gracilis_m ...................................................................A............ AP011277.1_Erimystax_dissimilis_ ...................................................................A............ AP011279.1_Pimephales_promelas_m ..................G............................................................. AP011280.1_Clinostomus_elongatus ..........T........................................................A............ AP012079.1_Luxilus_chrysocephalu ..................G................G............................................ AP012080.1_Macrhybopsis_gelida_m ..........................-..................................C.....AT........... AP012083.1_Notropis_atherinoides ..................G...........C................................................. AP012084.1_Notropis_baileyi_mito ..................G............................................................. AP012087.1_Cyprinella_galactura_ ....G........................................................................... AP012088.1_Hybopsis_lineapunctat ..................G..........................................C........C......... AP012090.1_Luxilus_cornutus_mito ..................G................G............................................ AP012091.1_Lythrurus_ardens_mito ..................G............................................................. AP012092.1_Lythrurus_fumeus_mito ..............................C................................................. AP012093.1_Lythrurus_lirus_mitoc ..................G............................................................. AP012094.1_Lythrurus_umbratilis_ ..................G............................................................. AP012095.1_Macrhybopsis_meeki_mi ..........................-..................................C.....AT........... AP012097.1_Notropis_bifrenatus_m ..................G............................................................. AP012098.1_Pimephales_sp._MCZunc ..................G............................................................. AP012100.1_Notropis_telescopus_m ..................G............................................................. AP012101.1_Pimephales_notatus_mi ..................G............................................................. AP012102.1_Pimephales_vigilax_mi ..................G..............TTT............................................ AP012103.1_Pogonichthys_macrolep ...................................................................A............ AP012106.1_Richardsonius_balteat ...................................................................A............ AP012108.1_Notropis_chrosomus_mi ................................................................................ AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..................G..............TTT............................................ Pimephales_vigilax_R1S3_________ ..................G..............TTT............................................ DQ536429.1_Notropis_stramineus_m ..................G............................................................. JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m ..................G......................................................A...... KT289925.1_Pimephales_promelas_m ..................G............................................................. KT424924.1_Rhinichthys_osculus_m ...................................................................A............ KU200257.1_Chanodichthys_ilishae ......................................................................G......... MF972070.1_Siphateles_bicolor_mo ...................................................................A............ MG570407.1_Notropis_chalybaeus_v ..................G...........C................................................. MG570408.1_Notropis_bifrenatus_v ..................G............................................................. MG570413.1_Notropis_heterolepis_ ..................G............................................................. MG570416.1_Rhinichthys_obtusus_v ........................................A..........................A............ MG570417.1_Rhinichthys_obtusus_v ........................................A..........................A............ MG570420.1_Pimephales_notatus_vo ..................G............................................................. MG570443.1_Notropis_hudsonius_is ................................................................................ MG570444.1_Rhinichthys_atratulus ...................................G...............................A............ MG570445.1_Rhinichthys_atratulus ...................................................................A............ MG570447.1_Luxilus_cornutus_isol ..................G................G............................................ MG570449.1_Luxilus_cornutus_isol ..................G................G............................................ MG570450.1_Pimephales_notatus_is ..................G............................................................. MG570451.1_Notropis_bifrenatus_i ..................G............................................................. MG570453.1_Exoglossum_maxillingu ...................................................................A............ MG570454.1_Pimephales_promelas_i ..................G............................................................. MG570455.1_Notropis_atherinoides ..................G...........C................................................. MG570456.1_Notropis_atherinoides ..................G...........C................................................. MG570457.1_Pimephales_notatus_is ..................G............................................................. MG570458.1_Pimephales_notatus_is ..................G............................................................. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..........................-..................................................... MT364325.1_Hybognathus_amarus_mi ................................................................................ MT501368.1_Gila_cypha_isolate_SN ...................................................................A............ MT501369.1_Notropis_simus_pecose ..................G......................................G...................... MT501378.1_Hybognathus_amarus_is ................................................................................ MT501385.1_Notropis_jemezanus_vo ..................G...........C................................................. MT501391.1_Rhinichthys_osculus_i ...................................................................A............ MT667239.1_Rhinichthys_osculus_t ...................................................................A............ MT667242.1_Luxilus_cornutus_vouc ..................G................G............................................ MW300340.1_Hybognathus_placitus_ ..................G...........C................................................. MW300341.1_Hybognathus_placitus_ ..................G...........C................................................. NC_013763.1_Mylocheilus_caurinus ...................................................................A............ NC_033926.1_Opsopoeodus_emiliae_ ..........................-......GT.................................T....A...... NC_037008.1_Notropis_chalybaeus_ ..................G...........C................................................. NC_037009.1_Notropis_heterolepis ..................G............................................................. NC_037010.1_Rhinichthys_obtusus_ ........................................A..........................A............ NC_037014.1_Notropis_hudsonius_i ................................................................................ NC_037015.1_Exoglossum_maxilling ...................................................................A............ NC_054086.1_Ptychocheilus_lucius ................................................................................ NC_054257.1_Gila_cypha_isolate_S ...................................................................A............ NC_054259.1_Gila_nigrescens_isol ...................................................................A............ NC_054260.1_Hybognathus_amarus_i ................................................................................ NC_054262.1_Notropis_jemezanus_v ..................G...........C................................................. Pimephales_notatus_R2S3_________ ..................G............................................................. Pimephales_tenellus_tenellu_R2S1 ................................................................................ Pimephales_tenellus_parvice_R2S2 ................................................................................ Pimephales_notatus_R1S1_________ ..................G............................................................. MG570452.1_Pimephales_promelas_i ..................G............................................................. MG570452.1_Pimephales_promelas_S ..................G............................................................. AB626850.1_Megalobrama_terminali TCTAGTGAAATGCCCCAATTAAACCCCAATCCCTGATTCGCAATTCTAGTATTCTCATGAATCGTCTTTCTCACCATCAT AP010779.1_Mylocheilus_caurinus_ ..................C.C.....T..C..T...........C........T.........A.T..C.....T..T.. AP011215.1_Gila_sp._1460_mitocho ..............T...C.T.......GC..T..........................GG....T...........T.. AP011263.1_Scardinius_erythropht ..............T...C.C........C..T....................T...........T..C.....T..T.. AP011267.1_Algansea_lacustris_mi ........C.....T...C.T.....T.GC..............C..G.....T......T..A.T..C........T.. AP011268.1_Yuriria_alta_mitochon ........C.....T...C.C........C...........G...........T......T..A.T..C........T.. AP011273.1_Hybognathus_nuchalis_ ........C.....T...C.C.....T...........T.....................T..A.T..C.....T..T.. AP011274.1_Couesius_plumbeus_mit ........C.....T...C.T.......GC.......................T........TA.T..C.....T..T.. AP011275.1_Platygobio_gracilis_m ..............T...C.T........C..............................T..A.T..C.....T..T.. AP011277.1_Erimystax_dissimilis_ ..................C.C.......................C...A.............TA....C.....T..... AP011279.1_Pimephales_promelas_m ........C.....T...C.C..T..T..C..T....................T......T..A.T..C........T.. AP011280.1_Clinostomus_elongatus ..................C.T.....T..............G.....................A.T..C..T.....T.. AP012079.1_Luxilus_chrysocephalu ........T.....T...C.C..T..T..C..T....................T......T..A.T..C........... AP012080.1_Macrhybopsis_gelida_m ..................C.T........C..T.....TAT............T......T.TA....C.....T..T.. AP012083.1_Notropis_atherinoides ........C.....T...C.C.....T..C...............T.......T......T..A.T..C..T...G.... AP012084.1_Notropis_baileyi_mito ........C.....T...C.C.....T..C........T.....................T..A.T..C.....T..T.. AP012087.1_Cyprinella_galactura_ ........C........GC.C.....T.GC........T..............T......T..A.T..C........... AP012088.1_Hybopsis_lineapunctat ........C.....T...C.C.....T.....T.....T.T............T......T..A.T..C.....T..... AP012090.1_Luxilus_cornutus_mito ........C.....T...C.C.....T..C..T...............C....T......T..A....C......G.T.. AP012091.1_Lythrurus_ardens_mito ........C.....T..GC.C.....T..C.......................T......T..A.T.....T.....T.. AP012092.1_Lythrurus_fumeus_mito ........C........GC.C.....T..C..T....................T......T..A.T..C..T.....T.. AP012093.1_Lythrurus_lirus_mitoc ........C.....T..GC.C.....T.TC.......................T......T..A.T.....T.....T.. AP012094.1_Lythrurus_umbratilis_ ........C.....T..GC.C.....T..C.......................T......T..A.T.....T.....T.. AP012095.1_Macrhybopsis_meeki_mi ..............T...C.T.....T..C..T.....TAT...................T.TA.T..C.....TT.T.. AP012097.1_Notropis_bifrenatus_m C.C.....C.....T...C.C.....T..C..A....................T......T..A.T.....T..T..T.. AP012098.1_Pimephales_sp._MCZunc ........C.....T...C.C..T.....C.......................T......T..A....C.....T..T.. AP012100.1_Notropis_telescopus_m ........C.........C.C...........T....................T......C..A...........G.T.. AP012101.1_Pimephales_notatus_mi ........C.....T...C.C........C.......................T......T..A....C.....T..T.. AP012102.1_Pimephales_vigilax_mi ........T.....T...C.C..T..TG..........T..C...........T......T.TA....C..G..G..... AP012103.1_Pogonichthys_macrolep ..................C.C.....T..C..T...........C........T.........A.T..C.....T..T.. AP012106.1_Richardsonius_balteat ..................C.C.....T..C...........G..C........T.........A.T..C..T..T..T.. AP012108.1_Notropis_chrosomus_mi ........C.....T..GC.C.....T.GC..............................T..A.T..C........T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ........T.....T...C.C..T..TG..........T..C...........T......T.TA....C..G..G..... Pimephales_vigilax_R1S3_________ ........T.....T...C.C..T..TG..........T..C...........T......T.TA....C..G..G..... DQ536429.1_Notropis_stramineus_m C......GC.....T...C.C.....T..C..............C........T......T..A................ JX910141.1_Squaliobarbus_curricu ..............T...C..........C........T........................A....C........T.. KC351187.1_Squaliobarbus_curricu ..............T...C..........C........T........................A....C........T.. KT278765.1_Pimephales_promelas_m ........C.....T...C.C..T..T..C..T....................T......T..A.T..C........T.. KT289925.1_Pimephales_promelas_m ........C.....T...C.C..T..T..C..T....................T......T..A.T..C........T.. KT424924.1_Rhinichthys_osculus_m ..................C.T.......................C.....G............A....C.....T..T.. KU200257.1_Chanodichthys_ilishae .............................C........T.................C..............T.....T.. MF972070.1_Siphateles_bicolor_mo ..............T...C.T..T.....C.......................T.....GG....T..C......G.T.. MG570407.1_Notropis_chalybaeus_v ........C.....T...C.T........C..T....................T......T..A.T..C........T.C MG570408.1_Notropis_bifrenatus_v C.C.....C.....T...C.C.....T..C..A....................T......T..A.T.....T..T..T.. MG570413.1_Notropis_heterolepis_ ..................C.C........C...........G...........T......T..A....C......G..G. MG570416.1_Rhinichthys_obtusus_v ..................C.C...........T...........C........T.........A....C.....TG.T.. MG570417.1_Rhinichthys_obtusus_v ..................C.C...........T...........C........T.........A....C.....TG.T.. MG570420.1_Pimephales_notatus_vo ........C.....T...C.C..T.....C.......................T......T..A....C.....T..T.. MG570443.1_Notropis_hudsonius_is ........C.....T...C.T.....TG.C..T.....T.....................T.......C........T.. MG570444.1_Rhinichthys_atratulus ..................C.C.......................C........T.........A....C.....T..T.. MG570445.1_Rhinichthys_atratulus ..................C.C.......................C........T.........A....C.....T..T.. MG570447.1_Luxilus_cornutus_isol ........C.....T...C.C.....T..C..T...............C....T......T..A....C........T.. MG570449.1_Luxilus_cornutus_isol ........C.....T...C.C.....T..C..T...............C....T......T..A....C........T.. MG570450.1_Pimephales_notatus_is ........C.....T...C.C..T.....C.......................T......T..A....C.....T..T.. MG570451.1_Notropis_bifrenatus_i C.C.....C.....T...C.C.....T..C..A....................T......T..A.T.....T..T..T.. MG570453.1_Exoglossum_maxillingu ..................C.C.......................C...A.............TA....C.....T..... MG570454.1_Pimephales_promelas_i ........C.....T...C.C..T..T..C..T....................T......T..A.T..C........T.. MG570455.1_Notropis_atherinoides ........C.....T...C.C.....T..C.......................T......T..A.T..C........... MG570456.1_Notropis_atherinoides ........C.....T...C.C.....T..C.......................T......T..A.T..C..T...G.... MG570457.1_Pimephales_notatus_is ........C.....T...C.C..T.....C.......................T......T..A....C.....T..T.. MG570458.1_Pimephales_notatus_is ........C.....T...C.C..T.....C.......................T......T..A....C.....T..T.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ........C.....T..GC.C.....T..C........T.....................T..A....C........T.. MT364325.1_Hybognathus_amarus_mi ........C.....T...C.C.....T...........T..............T......T..A....C.....T..T.. MT501368.1_Gila_cypha_isolate_SN ..............T...C.T........C.......................T.....GG....T..C......G.T.. MT501369.1_Notropis_simus_pecose C.......C.....T...C.T.....TG.C.................G............T..A.T..C........... MT501378.1_Hybognathus_amarus_is ........C.....T...C.C.....T...........T..............T......T..A....C.....T..T.. MT501385.1_Notropis_jemezanus_vo ........G.....T...C.C.....T..C.......................T......T..A.T..C..T........ MT501391.1_Rhinichthys_osculus_i ..................C.C..................A....C..................A....C.....T..T.. MT667239.1_Rhinichthys_osculus_t ..................C.C..................A....C..................A....C.....T..T.. MT667242.1_Luxilus_cornutus_vouc ........C.....T...C.C.....T..C..T...............C....T......T..A....C........T.. MW300340.1_Hybognathus_placitus_ ........C.....T...C.C.....T..C..T....................T......T..A..........T..T.. MW300341.1_Hybognathus_placitus_ ........C.....T...C.T.....T..C..T....................T......T..A..........T..T.. NC_013763.1_Mylocheilus_caurinus ..................C.C.....T..C..T...........C........T.........A.T..C.....T..T.. NC_033926.1_Opsopoeodus_emiliae_ ........C.....T...C.T..T..T..C..T...........................C..A....C........... NC_037008.1_Notropis_chalybaeus_ ........C.....T...C.T........C..T....................T......T..A.T..C........T.C NC_037009.1_Notropis_heterolepis ..................C.C........C...........G...........T......T..A....C......G..G. NC_037010.1_Rhinichthys_obtusus_ ..................C.C...........T...........C........T.........A....C.....TG.T.. NC_037014.1_Notropis_hudsonius_i ........C.....T...C.T.....TG.C..T.....T.....................T.......C........T.. NC_037015.1_Exoglossum_maxilling ..................C.C.......................C...A.............TA....C.....T..... NC_054086.1_Ptychocheilus_lucius ..............T...C.T........C.......................T.....GG..A.T..C......G.G.. NC_054257.1_Gila_cypha_isolate_S ..............T...C.T........C.......................T.....GG....T..C......G.T.. NC_054259.1_Gila_nigrescens_isol ..............T...C.T.......GC.......................T.....GG....T..C......G.T.. NC_054260.1_Hybognathus_amarus_i ........C.....T...C.C.....T...........T..............T......T..A....C.....T..T.. NC_054262.1_Notropis_jemezanus_v ........C.....T...C.C.....T..C.......................T......T..A.T..C..T........ Pimephales_notatus_R2S3_________ ........C.....T...C.C..T.....C.......................T......T..A.T..C.....TG.T.. Pimephales_tenellus_tenellu_R2S1 ........C.....T...C.C..T..T..C........T.....C...A....T......C..A....C........... Pimephales_tenellus_parvice_R2S2 ........C.....T...C.C..T..T..C........T.....C...A....T......C..A....C..T.....T.. Pimephales_notatus_R1S1_________ ........C.....T...C.C..T.....C.......................T......T..A.T..C.....TG.T.. MG570452.1_Pimephales_promelas_i ........C.....T...C.C..T..T..C..T....................T......T..A.T..C........T.. MG570452.1_Pimephales_promelas_S ........C.....T...C.C..T..T..C..T....................T......T..A.T..C........T.. AB626850.1_Megalobrama_terminali CCCAACTAAAATCTTAAATCACACCACGCCAAATGAACCAATCCCAATAAGTGAAGAAAAACACAAAACAGAACCCTGAG AP010779.1_Mylocheilus_caurinus_ ......C...G....G.GC..T..A..A...........G.C.....................T..G..T...T...... AP011215.1_Gila_sp._1460_mitocho T..G..C...........C.....AG.A........G...GC.....................T.....T..G......A AP011263.1_Scardinius_erythropht ......C......C.G.....T..AG.A.....C......GC.........C.....G.....T.....T..G......A AP011267.1_Algansea_lacustris_mi T.....C...G.......C...TTA..A..T..........C.....................T........CT.....A AP011268.1_Yuriria_alta_mitochon T.....C...G..C....C...TTA..A..T........G.C........A............T.....C..CT.....A AP011273.1_Hybognathus_nuchalis_ T.....C...G.G.........TTA..A..C.........GC.........C........G..T.....T..CT.....A AP011274.1_Couesius_plumbeus_mit T..C..C........G..C..T...G.A.....C......GC.........C...........T.....T...T.....A AP011275.1_Platygobio_gracilis_m ......C...G.......C...TTA.....T........GGC.....................T.....T..CT.....A AP011277.1_Erimystax_dissimilis_ T.....C..GG.T...........A..A...........TGC..............G............T...T.....A AP011279.1_Pimephales_promelas_m ......C..............TCTA..A..C.........GC....G................T.....T..CT.....A AP011280.1_Clinostomus_elongatus ......C...G.......C....TA..A.....C.......C.....................T..G..T..C....... AP012079.1_Luxilus_chrysocephalu ......C...G.......C..TTTA..A..C.........GC.....................T.....T..CT.....A AP012080.1_Macrhybopsis_gelida_m T.....C...G......G....TTA..A..T.........GC........A......G.....T.....T..TT.....A AP012083.1_Notropis_atherinoides ......C...G.T.....C..TTTA..A..T.........GC...T.....C...........T.....C..CT.....A AP012084.1_Notropis_baileyi_mito ......C...G..........TTTA..A..T..........C.....................T.....C..CT.....A AP012087.1_Cyprinella_galactura_ T.....C...G....G..C..TCTG..A..T..........C......G..............T.....C..CT.....A AP012088.1_Hybopsis_lineapunctat ...C..................TTA..A..T........GGC..A.G...................G..CC.CT.....A AP012090.1_Luxilus_cornutus_mito ......C...G..........TTTA..A..T..........C...............G.....T.....T..CT.....A AP012091.1_Lythrurus_ardens_mito ......C...G.....GG...TTTA..A..T.........GC........A............T.....T..CT.....A AP012092.1_Lythrurus_fumeus_mito ......C...G......GC...TTA.....T.........GC.....................T..G..C..CT.....A AP012093.1_Lythrurus_lirus_mitoc ......C...G.T...GG...TTTA..A..T..........C........A............T.....T..CT.....A AP012094.1_Lythrurus_umbratilis_ ......C...G.....GG...TTTA..A..T.........GC........A............T.....T..CT.....A AP012095.1_Macrhybopsis_meeki_mi T.........G......GC..TCTA..A..T.....G...GC........A............T.....C..CT.....A AP012097.1_Notropis_bifrenatus_m ..........G..........T.TTT.A..T........GGC.....................T.....C..TT.....A AP012098.1_Pimephales_sp._MCZunc .........GG.......C..TCTA..A..T.........GC.....................T.....T..CT.....A AP012100.1_Notropis_telescopus_m .....................TCTG..A..C.........GC.....................T.....C..CT.....A AP012101.1_Pimephales_notatus_mi ..........G.......C..TCTA..A..T.........GC........A............T.....T..CT.....A AP012102.1_Pimephales_vigilax_mi T.....C...G......GC..TTTA..C..T..........C...T....AC..G........T.....TA.CT.....A AP012103.1_Pogonichthys_macrolep ......C...G....G.GC..T..A..A.............C......G...A..........T...G.T...T...... AP012106.1_Richardsonius_balteat ......C...G....G..C.....A..A.............C......G..............T..G..T..G....... AP012108.1_Notropis_chrosomus_mi ...G..C...G...........TTA..A..T..C.......C...G....A............T.....C..TT.....A AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T.....C...G......GC..TTTA..C..T..........C...T....AC..G........T.....TA.CT.....A Pimephales_vigilax_R1S3_________ T.....C...G......GC..TTTA..C..T..........C...T....AC..G........T.....TA.CT.....A DQ536429.1_Notropis_stramineus_m ......C..GG....G..C..TTTA..C..T.........GC...C.................T.....C..CT.....A JX910141.1_Squaliobarbus_curricu ..........G..........T.T...A.............C...G.................................. KC351187.1_Squaliobarbus_curricu ..........G............T...A.............C...................................... KT278765.1_Pimephales_promelas_m ......C..............TCTA..A..C.........GC.....................T.....T..CT.....A KT289925.1_Pimephales_promelas_m ......C..............TCTA..A..C.........GC.....................T.....T..CT.....A KT424924.1_Rhinichthys_osculus_m T.....C..GG......GC..TGTAG.A...........GGCA....................T.....T..GT.....A KU200257.1_Chanodichthys_ilishae ............T..............A.............C..............................G....... MF972070.1_Siphateles_bicolor_mo ...G..C...G..C...GC.....A..C............GC.....................T..G..T..G......A MG570407.1_Notropis_chalybaeus_v ......C...G..........TTTA..A..T.........GC.....................T.....C..CT.....A MG570408.1_Notropis_bifrenatus_v ..........G..........T.TTT.A..T........G.C.....................T.....C..TT.....A MG570413.1_Notropis_heterolepis_ ......C.........G....TCTA..A..T..........C.T...................T.....C..CT.....A MG570416.1_Rhinichthys_obtusus_v T.....C...G......GC.....GG.A..G.....G....C.....................T.....T...T.....A MG570417.1_Rhinichthys_obtusus_v T.....C...G......GC.....GG.A..G.....G....C.....................T.....T...T.....A MG570420.1_Pimephales_notatus_vo .........GG.......C..TCTA..A..T.........GC.....................T.....T..CT.....A MG570443.1_Notropis_hudsonius_is ......C...G....G......CTAG....T.........GC.....................T.....T..CT.....A MG570444.1_Rhinichthys_atratulus T..G..C..........GC.....GG.A..G.....G..GGCT....................T.....T...T.....A MG570445.1_Rhinichthys_atratulus T..G..C..........GC.....GG.A..G.....G..GGCT....................T.....T...T.....A MG570447.1_Luxilus_cornutus_isol ...G..C...G..........TTTA..A..T.........GC.....................T.....T..CT.....A MG570449.1_Luxilus_cornutus_isol ...G..C...G..........TTTA..A..T.........GC.....................T.....T..CT.....A MG570450.1_Pimephales_notatus_is .........GG.......C..TCTA..A..T.........GC.....................T.....T..CT.....A MG570451.1_Notropis_bifrenatus_i ..........G..........T.TTT.A..T........GGC.....................T.....C..TT.....A MG570453.1_Exoglossum_maxillingu T.....C..GG.T...........A..A...........TGC...........................T...T.....A MG570454.1_Pimephales_promelas_i ......C..............TCTA..A..C.........GC.....................T.....T..CT.....A MG570455.1_Notropis_atherinoides ......C...G.T.....C..TTTA..A..T.........GC...T.....C...........T.....C..CT.....A MG570456.1_Notropis_atherinoides ......C...G.T.....C..TTTA..A..T.........GC...T.....C...........T.....C..CT.....A MG570457.1_Pimephales_notatus_is .........GG.......C..TCTA..A..T.........GC.....................T.....T..CT.....A MG570458.1_Pimephales_notatus_is .........GG.......C..TCTA..A..T.........GC.....................T.....T..CT.....A MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ......C...............TTA..A..T.........GC.....................T..G..C..TT.....A MT364325.1_Hybognathus_amarus_mi T.....C...G.G.........TTA..A..C..........CA.......AC........G..T.....T..CT.....A MT501368.1_Gila_cypha_isolate_SN T..G..C...G..C....C.....A..A............GC.....................T..G..T..G......A MT501369.1_Notropis_simus_pecose ......C.......C.......CTA..A..T.........GC.....................T.....C..CT.....A MT501378.1_Hybognathus_amarus_is T.....C...G.G.........TTA..A..C..........CA........C........G..T.....T..CT.....A MT501385.1_Notropis_jemezanus_vo ..........G.......C...CTA..A..C.........GC...C.....C...........T.....C..CT.....A MT501391.1_Rhinichthys_osculus_i ......C..GG.....GGC.....AG.A........G...GC..A...G..............T.....T...T.....A MT667239.1_Rhinichthys_osculus_t ..T...C..GG.....GGC.....AG.A........G...GC..A...G..............T.....T...T.....A MT667242.1_Luxilus_cornutus_vouc ...G..C...G..........TTTA..A..T.........GC.....................T.....T..CT.....A MW300340.1_Hybognathus_placitus_ ......C...G...........TTA..A..T.........GC...T.....C...........T.....T..CT.....A MW300341.1_Hybognathus_placitus_ ......C...G...........TTA..A..T.........GC...T.....C...........T.....T..CT.....A NC_013763.1_Mylocheilus_caurinus ......C...G....G.GC..T..A..A...........G.C.....................T..G..T...T...... NC_033926.1_Opsopoeodus_emiliae_ ....CT...GG.......C...CTA.....T.........G.G.TG....A......C.....T.GT..T..CT.....A NC_037008.1_Notropis_chalybaeus_ ......C...G..........TTTA..A..T.........GC.....................T.....C..CT.....A NC_037009.1_Notropis_heterolepis ......C.........G....TCTA..A..T..........C.T...................T.....C..CT.....A NC_037010.1_Rhinichthys_obtusus_ T.....C...G......GC.....GG.A..G.....G....C.....................T.....T...T.....A NC_037014.1_Notropis_hudsonius_i ......C...G....G......CTAG....T.........GC.....................T.....T..CT.....A NC_037015.1_Exoglossum_maxilling T.....C..GG.T...........A..A...........TGC...........................T...T.....A NC_054086.1_Ptychocheilus_lucius T.....C...G..C....C.....A..A.............C.....................T..G..T..G......A NC_054257.1_Gila_cypha_isolate_S T..G..C...G..C....C.....A..A............GC.....................T..G..T..G......A NC_054259.1_Gila_nigrescens_isol ...G..C......C....C.....AG.A............GC......G..............T..G..T..G......A NC_054260.1_Hybognathus_amarus_i T.....C...G.G.........TTA..A..C..........CA.......AC........G..T.....T..CT.....A NC_054262.1_Notropis_jemezanus_v ..........G.......C...CTA..A..C.........GC...C.....C...........T.....C..CT.....A Pimephales_notatus_R2S3_________ .........GG..........TTTA..A..T.........GC........A............T.....T..CT.....A Pimephales_tenellus_tenellu_R2S1 .........GG..........TTTA..A..T.........GC.....................T..G..TA.CT.....A Pimephales_tenellus_parvice_R2S2 .........GG..........TTTA..A..T.........GC.....................T.....T..CT.....A Pimephales_notatus_R1S1_________ .........GG..........TTTA..A..T.........GC........A............T.....T..CT.....A MG570452.1_Pimephales_promelas_i ......C..............TCTA..A..C.........GC.....................T.....T..CT.....A MG570452.1_Pimephales_promelas_S ......C..............TCTA..A..C.........GC.....................T.....T..CT.....A AB626850.1_Megalobrama_terminali ACTGACCATGATAGTAAGCTTTTTTGATCAATTCGCAAGCCCATCTTTCCTAGGAATTCCACTTATTGCTATTGCAATCG AP010779.1_Mylocheilus_caurinus_ .............A................G..T........C.................T..C..C..CG.......T. AP011215.1_Gila_sp._1460_mitocho ..................T.....C........T...........C........GG.C...........CG....G..T. AP011263.1_Scardinius_erythropht ........................C..C.................C...........C.....C.....C........T. AP011267.1_Algansea_lacustris_mi .............ACT.................T........C..CC.......T.....G..C..C..C........T. AP011268.1_Yuriria_alta_mitochon ....G........AC............C.....T........C....................C.....AG.......T. AP011273.1_Hybognathus_nuchalis_ .T...........AC......C..C..C.....T........C.......................C...G.......T. AP011274.1_Couesius_plumbeus_mit ..............C..................T...........C.........C.C.....C.....CG.......T. AP011275.1_Platygobio_gracilis_m ..............................G..T........T..C..............G..C.....C........T. AP011277.1_Erimystax_dissimilis_ G............ACG...........C..............G..C.....G...G.......C..C..CG.......T. AP011279.1_Pimephales_promelas_m .............AC......C.....C.....T........T....................C..C...G.......T. AP011280.1_Clinostomus_elongatus .................................T...........C.....G...G..........C..CG.......T. AP012079.1_Luxilus_chrysocephalu .............AC......C.....C.....T........C....................C..C..C........T. AP012080.1_Macrhybopsis_gelida_m .................................T.....T..C..C...T................C........G..TA AP012083.1_Notropis_atherinoides .............AC......C..C..C..G..T........C.................G..C..C..CG......... AP012084.1_Notropis_baileyi_mito .............AC......C.....C.....T........C........C........G..C..C............. AP012087.1_Cyprinella_galactura_ .....................C..C..C..G..T........C.....T............................... AP012088.1_Hybopsis_lineapunctat .T...................C.....C.....T........T........G...........C..C..A........T. AP012090.1_Luxilus_cornutus_mito .............AC......C.....C.....T........C....................C..C..CG....C..T. AP012091.1_Lythrurus_ardens_mito ..........G..AC......C...........T........C....................C..C..C.......... AP012092.1_Lythrurus_fumeus_mito .T...................C..C..C.....T........C.....T.....G..C.....C..C..C.......... AP012093.1_Lythrurus_lirus_mitoc .............AC......C...........T........C..............C.....C..C..CG......... AP012094.1_Lythrurus_umbratilis_ ..........G..AC......C...........T........C....................C..C..C.......... AP012095.1_Macrhybopsis_meeki_mi G............A...................T.....T..C..C....................C...........TA AP012097.1_Notropis_bifrenatus_m .............AC......C.....C..G..T........C..............C........C..CG.......T. AP012098.1_Pimephales_sp._MCZunc .............AC............C.....T........C....................C..C...G.......T. AP012100.1_Notropis_telescopus_m .T...........AC......C.....C.....T........C........G...........C.....CG.......T. AP012101.1_Pimephales_notatus_mi .............AC............C.....T........C....................C..C...G.....G.T. AP012102.1_Pimephales_vigilax_mi G.............C....C.C.....C..G..T........C...C..T.......C.....C..C...G.......T. AP012103.1_Pogonichthys_macrolep ..............................G..T........C..C.....G........G.....C..CG.......T. AP012106.1_Richardsonius_balteat .................................T...........C..T.....................G.......T. AP012108.1_Notropis_chrosomus_mi .............ACG.....C.....C..G..T........C..............C.....C..C.....C......T AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ G.............C....C.C.....C..G..T........C...C..T.......C.....C..C...G.......T. Pimephales_vigilax_R1S3_________ G.............C....C.C.....C..G..T........C...C..T.......C.....C..C...G.......T. DQ536429.1_Notropis_stramineus_m ..............C......C.....C.....T........C..............C.....C..C..CG.......T. JX910141.1_Squaliobarbus_curricu ........................C..C.................C...........C.....C................ KC351187.1_Squaliobarbus_curricu ........................C..C.................C...........C.....C................ KT278765.1_Pimephales_promelas_m .............AC......C.....C.....T........T....................C..C...G.......T. KT289925.1_Pimephales_promelas_m .............AC......C.....C.....T........T....................C..C...G.......T. KT424924.1_Rhinichthys_osculus_m .................................T.................G..C.....G..C..C..CG......... KU200257.1_Chanodichthys_ilishae .............A.............C.................C........C......................... MF972070.1_Siphateles_bicolor_mo ........................C..C.....T..G.....G..C...........C........C..C........T. MG570407.1_Notropis_chalybaeus_v ..............C......C...........T........C....................C..C............. MG570408.1_Notropis_bifrenatus_v .............AC......C.....C..G..T........C..............C........C..CG.......T. MG570413.1_Notropis_heterolepis_ .............AC....C.C.....C..G..T........T.....A..G.....C..G..C..C..CG.......T. MG570416.1_Rhinichthys_obtusus_v ..............C..................T...........C.....G...........C..C..CG.......T. MG570417.1_Rhinichthys_obtusus_v ..............C..................T...........C.....G...........C..C..CG.......T. MG570420.1_Pimephales_notatus_vo .............AC............C.....T........C....................C..C...G.......T. MG570443.1_Notropis_hudsonius_is G............ACG..T..C...........T........C..C........G...........C..CG......... MG570444.1_Rhinichthys_atratulus ..............C..................T...........C.................C..C..CG....G..T. MG570445.1_Rhinichthys_atratulus ..............C..................T...........C.................C..C..CG....G..T. MG570447.1_Luxilus_cornutus_isol .............AC......C.....C.....T........C....................C..C..CG....C..T. MG570449.1_Luxilus_cornutus_isol .............AC......C.....C.....T........C....................C..C..CG....C..T. MG570450.1_Pimephales_notatus_is .............AC............C.....T........C....................C..C...G.......T. MG570451.1_Notropis_bifrenatus_i .............AC......C.....C..G..T........C..............C........C..CG.......T. MG570453.1_Exoglossum_maxillingu G............ACG...........C..............G..C.....G...G.......C..C..CG.......T. MG570454.1_Pimephales_promelas_i .............AC......C.....C.....T........T....................C..C...G.......T. MG570455.1_Notropis_atherinoides .............AC......C..C..C..G..T........C.................G..C..C..CG......... MG570456.1_Notropis_atherinoides .............AC......C..C..C..G..T........C.................G..C..C..CG......... MG570457.1_Pimephales_notatus_is .............AC............C.....T........C....................C..C...G.......T. MG570458.1_Pimephales_notatus_is .............AC............C.....T........C....................C..C...G.......T. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .T...........AC......C.....C..G..T........C....................C.....C..C..G.... MT364325.1_Hybognathus_amarus_mi .T...........ACG.....C..C..C..G..T........C.......................C...G.......T. MT501368.1_Gila_cypha_isolate_SN ..................T.....C........T...........C........G..C...........CG....G..T. MT501369.1_Notropis_simus_pecose ..............C......C.....C..............C...........G.....G..C..C..C........T. MT501378.1_Hybognathus_amarus_is .T...........ACG.....C..C..C..G..T........C.......................C...G.......T. MT501385.1_Notropis_jemezanus_vo .............AC...T.....C..C..G..T........C....................C.....CG......... MT501391.1_Rhinichthys_osculus_i .............A................G..T...........C.....G........G..C..C..CG.......T. MT667239.1_Rhinichthys_osculus_t .............A................G..T...........C.....G........G..C..C..CG.......T. MT667242.1_Luxilus_cornutus_vouc .............AC......C.....C.....T........C....................C..C..CG....C..T. MW300340.1_Hybognathus_placitus_ .T...........AC......C..C..C..G..T........C.....................G.C...G......... MW300341.1_Hybognathus_placitus_ .T...........ACG.....C..C..C..G..T........C.......................C...G......... NC_013763.1_Mylocheilus_caurinus .............A................G..T........C.................T..C..C..CG.......T. NC_033926.1_Opsopoeodus_emiliae_ .............A.............C..G..T........C.T...A........C.....C......G.....G.T. NC_037008.1_Notropis_chalybaeus_ ..............C......C...........T........C....................C..C............. NC_037009.1_Notropis_heterolepis .............AC....C.C.....C..G..T........T.....A..G.....C..G..C..C..CG.......T. NC_037010.1_Rhinichthys_obtusus_ ..............C..................T...........C.....G...........C..C..CG.......T. NC_037014.1_Notropis_hudsonius_i G............ACG..T..C...........T........C..C........G...........C..CG......... NC_037015.1_Exoglossum_maxilling G............ACG...........C..............G..C.....G...G.......C..C..CG.......T. NC_054086.1_Ptychocheilus_lucius ..................T.....C........T...........C........G..C...........C........T. NC_054257.1_Gila_cypha_isolate_S ..................T.....C........T...........C........G..C...........CG....G..T. NC_054259.1_Gila_nigrescens_isol ..................T.....C........T...........C...........C...........CG.......T. NC_054260.1_Hybognathus_amarus_i .T...........ACG.....C..C..C..G..T........C.......................C...G.......T. NC_054262.1_Notropis_jemezanus_v .............AC...T.....C..C..G..T........C...........G........C.....CG.......T. Pimephales_notatus_R2S3_________ .............AC......C...........T........C..............C.....C..C...G.......T. Pimephales_tenellus_tenellu_R2S1 .............AC......C.....C..G..T........C........G.....C.....C..CA..G......... Pimephales_tenellus_parvice_R2S2 .............AC......C.....C..G..T........C...........G..C.....C..CA..G......... Pimephales_notatus_R1S1_________ .............AC......C...........T........C..............C.....C..C...G.......T. MG570452.1_Pimephales_promelas_i .............AC......C.....C.....T........T....................C..C...G.......T. MG570452.1_Pimephales_promelas_S .............AC......C.....C.....T........T....................C..C...G.......T. AB626850.1_Megalobrama_terminali CACTGCCATGACTTCTTTTCCCAACCCCGCCATCCCGGTGAATCAACAACCGACTCATTACCCTCCAAACATGATTCATT AP010779.1_Mylocheilus_caurinus_ ....A......G.A..A..T........A.....T..A..GG.T..T..............TG.T........G..T..C AP011215.1_Gila_sp._1460_mitocho ....T.....GG.G..A........T..T..G.....A.....A..T..T.....T.....TA.T.....G.....T... AP011263.1_Scardinius_erythropht ...........G.A..A..T.....T..T.....T..A...G.A..T..T.....T.....TG.............T... AP011267.1_Algansea_lacustris_mi ....T......G.AT.A.....T.....AT....T..C.....T.............C...TG.T...G....G..T... AP011268.1_Yuriria_alta_mitochon ....T......G.AT.G..T........AT....T..C.....A..T.G......T.CC..T......G.......T... AP011273.1_Hybognathus_nuchalis_ ....T......G.AT.A...........CT....T..A.....A....G......T.C...A..T..GG.......T... AP011274.1_Couesius_plumbeus_mit ....C......G.G..G..T..G..T..A..C..G..T.....A..T........T.....TG..........G..T... AP011275.1_Platygobio_gracilis_m ....C......G.AT.A..T..T.....AT....T..C.....A....G........C...TG.T...G.......T... AP011277.1_Erimystax_dissimilis_ ....A......G.AT.A..T........AT....T..C.....A..T.G......T.....TG.T..G.....G..T... AP011279.1_Pimephales_promelas_m ....T..C...G.AT.A...........CT....T..C.....A..T.GT.......CC..A..T...G.......T... AP011280.1_Clinostomus_elongatus ....C......G.A..A..T....................GG.A..T........T.....TG.T...........T... AP012079.1_Luxilus_chrysocephalu ....T......G.AT.G..T..G.....AT....T..C.....A....G........C...G..T..GG.G.....T... AP012080.1_Macrhybopsis_gelida_m ....T......G.AT.A..T........AT..G.T..C...G.A....G......T.C...TA.T...G.......T... AP012083.1_Notropis_atherinoides ....T......G.AT.A...........CT.............A..T.G........C...G..T..GG.G..G..T..C AP012084.1_Notropis_baileyi_mito ....C......G.AT.A.....C.....AT.G..T..C.....A..T.G......T.CC..A..T...G....G..T... AP012087.1_Cyprinella_galactura_ ....T.....GG.AT.G...........TT.......C.....G..T.G........CC..A..T..GG....G..T... AP012088.1_Hybopsis_lineapunctat ....T......G.AT.A..T.....T..AT....T..C.....A..T.G......T.C...A..T............... AP012090.1_Luxilus_cornutus_mito ....T......G.AT.A..T........AT....T..C.....A....G......T.CC..A..T...G.......T... AP012091.1_Lythrurus_ardens_mito ....C......G.AA.G.....T.....CT....T..C.....A..T.G........C...A..T...G.C.....T... AP012092.1_Lythrurus_fumeus_mito ....C......G.AT.G...........TT....T..T.....A..T.G........C...A..T..GG.G.....T... AP012093.1_Lythrurus_lirus_mitoc ....C......G.AA.G.....T.....CT....T..T...G.A..T.G........C...A..T...G.C.....T... AP012094.1_Lythrurus_umbratilis_ ....C......G.AA.G.....T.....CT.G..T..T.....A..T.G........C...A..T...G.C.....T... AP012095.1_Macrhybopsis_meeki_mi ....C.....GG.AT.A...........AT..G.T..C...G.A..T.G......T.C...TA.T...G.......T... AP012097.1_Notropis_bifrenatus_m ....T..G...G.AT.A..T.....T..AT....T..C.....A..T.G........C...A..T...G.......T... AP012098.1_Pimephales_sp._MCZunc ....T..T...G.AT.A...........AT....T..C.....G....G........CC..A..T...G.G.....T... AP012100.1_Notropis_telescopus_m ....T......G.A..G........G..AT....T..C.....G..TGG......T.C...A......G........... AP012101.1_Pimephales_notatus_mi ....T..T...G.AT.A...........AT....T..C.....A....G........CC..A..T...G.G.....T... AP012102.1_Pimephales_vigilax_mi ....C..C...G.AT.A........A.T.T.......C....CA.CT........T...T.A..T...........T... AP012103.1_Pogonichthys_macrolep ...........G.A..A..T........A........A..GG.T..T..............TG.T............... AP012106.1_Richardsonius_balteat .G.........G.GT.A...........A..G.....A...G....T........T.....TG.T........G...... AP012108.1_Notropis_chrosomus_mi ....T.....GG.GT.G.....G.....AT....T..C.....A..T.G......T.CC..A..T..GG.G..G..T... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....C..C...G.AT.A........A.T.T.......C....CA.CT........T...T.A..T...........T... Pimephales_vigilax_R1S3_________ ....C..C...G.AT.A........A.T.T.......C....CA.CT........T...T.A..T...........T... DQ536429.1_Notropis_stramineus_m ....C......G.AT.G..T..T.....CT....T..C..G..A..T.G......T.CC..G..T...G....G..T... JX910141.1_Squaliobarbus_curricu ....C......AC...C...........A.....T...........T........T..C..TG.T............... KC351187.1_Squaliobarbus_curricu ....C......A....C...........A.....T...........T........T..C..TG.T............... KT278765.1_Pimephales_promelas_m ....T..C...G.AT.A...........CT....T..C.....A..T.GT.......CC..A..T...G.......T... KT289925.1_Pimephales_promelas_m ....T..C...G.AT.AC..........CT....T..C.....A..T.GT.......CC..A..T...G.......T... KT424924.1_Rhinichthys_osculus_m ...........G.GT.G...........AT....T..A.....A..T.G......T.....TA.G.....G.....T... KU200257.1_Chanodichthys_ilishae ....A........C..C.........................................C..T...........G...... MF972070.1_Siphateles_bicolor_mo ....C......G.G..A........T..C.....T..A.....A...........T.....TA.T.....G.....T... MG570407.1_Notropis_chalybaeus_v ....T......G.AT.G.....C.....TT....T..C.....A..T.G......T.CC..A..T...G.......T... MG570408.1_Notropis_bifrenatus_v ....T..G...G.AT.A..T.....T..AT....T..C.....A..T.G........C...A..T...G.......T... MG570413.1_Notropis_heterolepis_ .T..C......G.AT.A..T........AT....T..C...G.A..T.C........CC..A..T...G........... MG570416.1_Rhinichthys_obtusus_v ....C......G.AT.G..T..G.....AT....T..C...G.A..T.G......T.....TG.T.....G.....T... MG570417.1_Rhinichthys_obtusus_v ....C......G.AT.G..T..G.....CT....T..C...G.A..T.G......T.....TG.T.....G.....T... MG570420.1_Pimephales_notatus_vo ....T..T...G.AT.A...........AT....T..C.....G....G........CC..A..T...G.G.....T... MG570443.1_Notropis_hudsonius_is ....C......G.AT.A..T..T.....TT.......C.....A..T.G......T.C....A.T..GG.G..G..T... MG570444.1_Rhinichthys_atratulus ....T......G.GT.G..T........AT.G..T..C.....A..T.G......TG.....A.T..G..G.....TG.. MG570445.1_Rhinichthys_atratulus ....T......G.GT.G..T........AT.G..T..C.....A..T.G......TG.....A.T..G..G.....TG.. MG570447.1_Luxilus_cornutus_isol ....T......G.AT.A..T........AT....T..C.....A....G......T.CC..A..T...G.......T... MG570449.1_Luxilus_cornutus_isol ....T......G.AT.A..T........AT....T..C.....A....G......T.CC..A..T...G.......T... MG570450.1_Pimephales_notatus_is ....T..T...G.AT.A...........AT....T..C.....G....G........CC..A..T...G.G.....T... MG570451.1_Notropis_bifrenatus_i ....T..G...G.AT.A..T.....T..AT....T..C.....A..T.G........C...A..T...G.......T... MG570453.1_Exoglossum_maxillingu ....A......G.AT.A..T........AT....T..C.....A..T.G......T.....TG.T..G.....G..T... MG570454.1_Pimephales_promelas_i ....T..C...G.AT.AC..........CT....T..C.....A..T.GT.......CC..A..T...G.......T... MG570455.1_Notropis_atherinoides ....T......G.AT.A...........CT.............A..T.G........C...G..T..GG.G..G..T..C MG570456.1_Notropis_atherinoides ....T......G.AT.A...........CT.............A..T.G............G..T..GG.G..G..T..C MG570457.1_Pimephales_notatus_is ....T..T...G.AT.A...........AT....T..C.....G....G........CC..A..T...G.G.....T... MG570458.1_Pimephales_notatus_is ....T..T...G.AT.A...........AT....T..C.....G....G........CC..A..T...G.G.....T... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ....T.....GG.AT.A............T....T..C...G.A..T.G........C...A..T..GG.......T... MT364325.1_Hybognathus_amarus_mi ....T......G.AT.A..T........CT....T..A.....A....G......T.C...G..T..GG.......T... MT501368.1_Gila_cypha_isolate_SN ....C......G.G..A........T..T..G.....A.....A..T..T.....T.....TA.T.....G.....T... MT501369.1_Notropis_simus_pecose ....T..C...G.AT.A............T..G.T..C.....A...........T.C...A......G.......T... MT501378.1_Hybognathus_amarus_is ....T......G.AT.A..T........CT....T..A.....A....G......T.C...G..T..GG.......T... MT501385.1_Notropis_jemezanus_vo ....T.....GG.AT.G........T..CT.............A..T.G...G....C...A..T...G.G.....T... MT501391.1_Rhinichthys_osculus_i .G..A......G.AT.G.....G.....AT....T..C.....A..T.G......T.....TG.T........G..T... MT667239.1_Rhinichthys_osculus_t .GT.A......G.AT.G.....G.....AT....T..C.....A..T.G......T.....TG.T........G..T... MT667242.1_Luxilus_cornutus_vouc ....T......G.AT.A..T........AT....T..C.....A....G......T.CC..A..T...G.......T... MW300340.1_Hybognathus_placitus_ ....C......G.AT.A..T........CT....T..T.....G..T.G......T.CC..A..T..GG....G..T... MW300341.1_Hybognathus_placitus_ ....C......G.AT.A..T........CT....T..T.....G..T.G......T.CC..A..T...G....G..T... NC_013763.1_Mylocheilus_caurinus ....A......G.A..A..T........A.....T..A..GG.T..T..............TG.T........G..T..C NC_033926.1_Opsopoeodus_emiliae_ .G..T......G.AT.AC..........CT....T..C.....A..T.G........CC..A..T...........T... NC_037008.1_Notropis_chalybaeus_ ....T......G.AT.G.....C.....TT....T..C.....A..T.G......T.CC..A..T...G.......T... NC_037009.1_Notropis_heterolepis .T..C......G.AT.A..T........AT....T..C...G.A..T.C........CC..A..T...G........... NC_037010.1_Rhinichthys_obtusus_ ....C......G.AT.G..T..G.....AT....T..C...G.A..T.G......T.....TG.T.....G.....T... NC_037014.1_Notropis_hudsonius_i ....C......G.AT.A..T..T.....TT.......C.....A..T.G......T.C....A.T..GG.G..G..T... NC_037015.1_Exoglossum_maxilling ....A......G.AT.A..T........AT....T..C.....A..T.G......T.....TG.T..G.....G..T... NC_054086.1_Ptychocheilus_lucius ....C......G.G..A........T..TA.G.....A.....A..T..T.....T.....TA.T.....G.....T... NC_054257.1_Gila_cypha_isolate_S ....C......G.G..A........T..T..G.....A.....A..T..T.....T.....TA.T.....G.....T... NC_054259.1_Gila_nigrescens_isol ....C......G.G..A........T..T..G.....A.....A..T..T.....T..C..TA.T.....G..G..T... NC_054260.1_Hybognathus_amarus_i ....T......G.AT.A..T........CT....T..A.....A....G......T.C...G..T..GG.......T... NC_054262.1_Notropis_jemezanus_v ....T.....GG.AT.G........T..CT.............A..T.G...G....C...A..T...G.G.....T... Pimephales_notatus_R2S3_________ ....T..T...G.AT.A...........AT....T..C.....A....G........CC..A..T...G.G..G..T... Pimephales_tenellus_tenellu_R2S1 ....T..C...G.AT.A..T........CT.......C.....A..T.G........CC..A......G.......T... Pimephales_tenellus_parvice_R2S2 ....T..C...G.AT.A..T........CT....T..C.....A..T.G........CC..A......G.......T... Pimephales_notatus_R1S1_________ ....T..T...G.AT.A...........AT....T..C.....A....G........CC..A..T...G.G..G..T... MG570452.1_Pimephales_promelas_i ....T..C...G.AT.AC..........CT....T..C.....A..T.GT.......CC..A..T...G.......T... MG570452.1_Pimephales_promelas_S ....T..C...G.AT.A...........CT....T..C.....A..T.GT.......CC..A..T...G.......T... AB626850.1_Megalobrama_terminali AACCGATTCACCAACCAATTAATAATGCCCTTAAATGTAGGAGGACATAAATGAGCACTACTATTAGCCTCATTAATAGT AP010779.1_Mylocheilus_caurinus_ ........T..T......C.G.....A.......................G............C.......CC.G...A. AP011215.1_Gila_sp._1460_mitocho ........T..T......C.......A...C......C...G..G........G..C..G...C.G.............. AP011263.1_Scardinius_erythropht .....G........T...C.T...T.A..GC.C.......................G..G...C.......TC....... AP011267.1_Algansea_lacustris_mi .....C.....T..T..G...T.......T..G........G.....C..G.........A.G..GA....C........ AP011268.1_Yuriria_alta_mitochon .....C..T..T..T......C.......TA.........C............G..CT..A.G..TA....C........ AP011273.1_Hybognathus_nuchalis_ .....T.....T..T..G..GT....A..T......A.............G.....C...A.G...A............. AP011274.1_Couesius_plumbeus_mit ........T.....T..G.......................C........G...............A....T........ AP011275.1_Platygobio_gracilis_m .....C.....T..T...C....G......C.............................A.....A.A..CC....G.. AP011277.1_Erimystax_dissimilis_ .....C..T..T..T...C.......A..TC...................G..G.....G...C..A............. AP011279.1_Pimephales_promelas_m .....C.....T..T..G...C.T..A..T...........C..............CT.GA.....A.......G...A. AP011280.1_Clinostomus_elongatus .....G..T..T..T...........A...C....C..G........................C.G.....T..G...A. AP012079.1_Luxilus_chrysocephalu .....C........T.....GC.G..............C.................CT..A.G...A............. AP012080.1_Macrhybopsis_gelida_m .....C..T..T..T...C..........T...........G..................A.C........C........ AP012083.1_Notropis_atherinoides .....C..T..T.........C.......T........G.................C...A.G...A....G..G..... AP012084.1_Notropis_baileyi_mito .....C........T......C....A..T......A.G.................C...A.....A............. AP012087.1_Cyprinella_galactura_ .....C..T..T..T..G..GC....A.........A.G...........G.....TT..A.G..TA...........T. AP012088.1_Hybopsis_lineapunctat ..T..C.....T..T...C.GT....A..T.....CA...CC..............C...A.....A.....C....G.. AP012090.1_Luxilus_cornutus_mito .....C........T...C..C....A..T........C..G.....C........C...A.G..TA............. AP012091.1_Lythrurus_ardens_mito .....C.....T..T...C.GC.......T........T..............G..C...A.....A............. AP012092.1_Lythrurus_fumeus_mito .....C.....T..T.....GC.......T........G..............G..C...A.G..GA............. AP012093.1_Lythrurus_lirus_mitoc .....C.....T..T.....GC....A..T........T.................C...A.....A.....C....... AP012094.1_Lythrurus_umbratilis_ .....C.....T..T...C.GC.......T........T.................C...A.....A............. AP012095.1_Macrhybopsis_meeki_mi .....C..T..T..T...C.G.....A..T...........G..................A.C........C........ AP012097.1_Notropis_bifrenatus_m .....C.....T..T......C.T..A..T..............................A.G...A..........G.. AP012098.1_Pimephales_sp._MCZunc .....C........T......C....A..T...........G........G.....C...A.G..TA............. AP012100.1_Notropis_telescopus_m .....C.....T..T.....GT....A...C.....A...................C..GA.....A............. AP012101.1_Pimephales_notatus_mi .....C........T......C....A..T...........G..............C...A.G..TA.....C....... AP012102.1_Pimephales_vigilax_mi .....C.....T..T......C....A..T..........................C...A....TA...........C. AP012103.1_Pogonichthys_macrolep ...........T.....G........A..TC................................C.......T........ AP012106.1_Richardsonius_balteat .....G..T.....T...........A.......................G............C.......T........ AP012108.1_Notropis_chrosomus_mi .....C.....T..T..GC.GC.......GC.G...A.............G.....C..CG.C...A............. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .....C.....T..T......C....A..T..........................C...A....TA...........C. Pimephales_vigilax_R1S3_________ .....C.....T..T......C....A..T..........................C...A....TA...........C. DQ536429.1_Notropis_stramineus_m .....C.....T..T......T.......T...........G..............T..GT.....A..........G.. JX910141.1_Squaliobarbus_curricu ........T..T..T...C....G..A...C............................T.....G........G..... KC351187.1_Squaliobarbus_curricu ........T..T..T...C....G..A...C............................T.....G........G..... KT278765.1_Pimephales_promelas_m .....C.....T..T..G...C.T..A..T...........T.....C........CT..A.....A.......G...A. KT289925.1_Pimephales_promelas_m .....C.....T..T......C.T..A..T...........C..............CT.GA.....A.......G...A. KT424924.1_Rhinichthys_osculus_m .....G..T..T..T..GC.......A..T.....C..G..G..............C......C..A....TC.C..G.. KU200257.1_Chanodichthys_ilishae ........T..T..T...C.....................................G..T...C.G.............. MF972070.1_Siphateles_bicolor_mo ........T..T......C...........C.....AC...............G..C......C.......T........ MG570407.1_Notropis_chalybaeus_v .....C.....T..T...C..C..........G....................G..C...A.G...A.......G..... MG570408.1_Notropis_bifrenatus_v .....C.....T..T......C.T..A..T..............................A.G...A..........G.. MG570413.1_Notropis_heterolepis_ .....C..T...........GC.G..A..T......A.G..G........G.....C...A....CA............. MG570416.1_Rhinichthys_obtusus_v .....G..T..T.................TC................C............A.....A....T........ MG570417.1_Rhinichthys_obtusus_v .....G..T..T.................TC................C............A.....A....T........ MG570420.1_Pimephales_notatus_vo .....C........T......C....A..T...........G........G.....C...A.G..TA............. MG570443.1_Notropis_hudsonius_is .....C.....T.GT......C.T..A..............G........G......T..A.G...A....TC....... MG570444.1_Rhinichthys_atratulus .....G..T..T..T..G...........TC.......G........C............A..C..A....T........ MG570445.1_Rhinichthys_atratulus .....G..T..T..T..G...........TC.......G........C............A..C..A....T........ MG570447.1_Luxilus_cornutus_isol .....C........T...C..C....A..T........C..G.....C........C...A.G..TA............. MG570449.1_Luxilus_cornutus_isol .....C........T...C..C....A..T........C..G.....C........C...A.G..TA............. MG570450.1_Pimephales_notatus_is .....C........T......C....A..T...........G........G.....C...A.G..TA............. MG570451.1_Notropis_bifrenatus_i .....C.....T..T......C.T..A..T..............................A.G...A..........G.. MG570453.1_Exoglossum_maxillingu .....C..T..T..T...C.......A..TC...................G..G.....G...C..A............. MG570454.1_Pimephales_promelas_i .....C.....T..T......C.T..A..T...........C..............CT.GA.....A.......G...A. MG570455.1_Notropis_atherinoides .....C..T..T.........C.......T..........................C...A.G...A.......G..... MG570456.1_Notropis_atherinoides .....C..T..T.........C.......T........G.................C...A.G...A....G..G..... MG570457.1_Pimephales_notatus_is .....C........T......C....A..T...........G........G.....C...A.G..TA............. MG570458.1_Pimephales_notatus_is .....C........T......C....A..T...........G........G.....C...A.G..TA............. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .....C.....T..T...C.GC....A..TC.....A.G..C..............C..GA.CC..A............. MT364325.1_Hybognathus_amarus_mi .....T..T..T..T..G..GT....A..T......A.............G.....C..TA.G...A............. MT501368.1_Gila_cypha_isolate_SN ........T..T..T...C.......A...C.....AC...G...........G..C......C.G.............. MT501369.1_Notropis_simus_pecose .....C.....T......C..C.G.....T..G...A....G..C...........C...A.C................. MT501378.1_Hybognathus_amarus_is .....T..T..T..T..G..GT....A..T......A.............G.....C..TA.G...A............. MT501385.1_Notropis_jemezanus_vo .....C..T..T.....G...C....A...C.........................C...A.G..GA....G..G..... MT501391.1_Rhinichthys_osculus_i ..T..G..T..T..T...C.......A..TC..........C..G...........T.........A....TC.T..... MT667239.1_Rhinichthys_osculus_t ..T..G..T..T..T...C.......A..TC..........C..G...........T.........A....TC.T..... MT667242.1_Luxilus_cornutus_vouc .....C........T...C..C....A..T........C..G.....C........C...A.G..TA............. MW300340.1_Hybognathus_placitus_ .....C.....T..T......T....A..T......A....G........G.....C...A.G...A............. MW300341.1_Hybognathus_placitus_ .....C.....T..T......T....A..T......A....G........G.....C...A.G...A............. NC_013763.1_Mylocheilus_caurinus ........T..T......C.G.....A.......................G............C.......CC.G...A. NC_033926.1_Opsopoeodus_emiliae_ .....C..T..T..T...C..C.T..A..GC.....A...................CT..A.G...A...........T. NC_037008.1_Notropis_chalybaeus_ .....C.....T..T...C..C..........G....................G..C...A.G...A.......G..... NC_037009.1_Notropis_heterolepis .....C..T...........GC.G..A..T......A.G..G........G.....C...A....CA............. NC_037010.1_Rhinichthys_obtusus_ .....G..T..T.................TC................C............A.....A....T........ NC_037014.1_Notropis_hudsonius_i .....C.....T.GT......C.T..A..............G........G......T..A.G...A....TC....... NC_037015.1_Exoglossum_maxilling .....C..T..T..T...C.......A..TC...................G..G.....G...C..A............. NC_054086.1_Ptychocheilus_lucius ........T..T..T...C......CA...C.....AC...G..G...........C......C.G.............. NC_054257.1_Gila_cypha_isolate_S ........T..T..T...C.......A...C.....AC...G...........G..C......C.G.............. NC_054259.1_Gila_nigrescens_isol ........T..T..T...C.......A.........AC......G........G..C......C.G.............. NC_054260.1_Hybognathus_amarus_i .....T..T..T..T..G..GT....A..T......A.............G.....C..TA.G...A............. NC_054262.1_Notropis_jemezanus_v .....C..T..T.....G...C....A...C.........................C...A.G..GA....G..G..... Pimephales_notatus_R2S3_________ ..T..C.....T..T......C....A..T..G.....G.................C...A.G..TA............. Pimephales_tenellus_tenellu_R2S1 .....C.....T..T......C....A..T..........................TT..A..C.GA..........G.. Pimephales_tenellus_parvice_R2S2 .....C.....T..T......C.G.....T..G.......................TT..A..C..A............. Pimephales_notatus_R1S1_________ ..T..C.....T..T......C....A..T..G.....G.................C...A.G..TA............. MG570452.1_Pimephales_promelas_i .....C.....T..T......C.T..A..T...........C..............CT.GA.....A.......G...A. MG570452.1_Pimephales_promelas_S .....C.....T..T..G...C.T..A..T...........C..............CT.GA.....A.......G...A. AB626850.1_Megalobrama_terminali ATTCCTTATTACCATCAACATACTAGGCCTCCTTCCATATACTTTCACACCTACAACGCAATTATCGCTGAATATAGGAT AP010779.1_Mylocheilus_caurinus_ G...........T..T..T..............C..C..C..C..T..G........A...C....AT.A.........C AP011215.1_Gila_sp._1460_mitocho .........C..A..T..T..............A........C..T.....C.....A...C....AT.A.........C AP011263.1_Scardinius_erythropht ......C..C..T..T......T.......T..C...........T..G........A...C....C..A..C.....GC AP011267.1_Algansea_lacustris_mi G...........T..T..T...T.......T..C..C..C..C..T.....C.....A...C.G..AT.A.........C AP011268.1_Yuriria_alta_mitochon G...........T.........T.......T..A........C..T.....C.....A..GC.G..A..A.........C AP011273.1_Hybognathus_nuchalis_ ...............T...........T..T..A..G..C..C..T..C.................AT.A.....G..GC AP011274.1_Couesius_plumbeus_mit C...........T..T..T.....G.....T..A........C..T...........T...C....CT.A..C......C AP011275.1_Platygobio_gracilis_m .........C..T..T......T....T..T..A........C..T.....C.....A...C....AT.A.........C AP011277.1_Erimystax_dissimilis_ ...T.....C..T..T..T..GT..........C........C..T...........A........TT.A.........C AP011279.1_Pimephales_promelas_m G..T.....C..T..T..T..GT....T.....A........C.....T..C.....T..GC.G..A..A.........C AP011280.1_Clinostomus_elongatus ............T..T..............T..C..T..C..C..............A...C.....T.A.........C AP012079.1_Luxilus_chrysocephalu ............T..T..T...T.......T..G.....C..C..T.....C.....A...C....CT.A.........C AP012080.1_Macrhybopsis_gelida_m ............T..T..T..GT.......TT.A.....C.....T...........A...C....AT.A.........C AP012083.1_Notropis_atherinoides ...T..G.....T..T.....GT.......T..G.....C..C.....C..C.....A...C.....T.A.........C AP012084.1_Notropis_baileyi_mito ......C.....T..T..T...T.G.....T..A.....C..C..T..C........A...C....C..A.....G...C AP012087.1_Cyprinella_galactura_ .....................G........A..A..G.....C.....C........A..GC.C..AT.A.....G.... AP012088.1_Hybopsis_lineapunctat G..T........T..T..T...T........T.A........A..T..C........A.........T...........C AP012090.1_Luxilus_cornutus_mito ............T..T.....GT.......T..A.....C..C.....G..C.........C....CT...........C AP012091.1_Lythrurus_ardens_mito ............T..T..T...T..........A..............C........A...C....AT.A.........C AP012092.1_Lythrurus_fumeus_mito ............T..T..T..............G..............C.................AT.A.........C AP012093.1_Lythrurus_lirus_mitoc ............T..T..T..GT..........A..G...........C........A........AT....C..G...C AP012094.1_Lythrurus_umbratilis_ ............T..T..T...T..........A...........T..C........A...C....AT.A.........C AP012095.1_Macrhybopsis_meeki_mi ............T..T..T...T.......TT.A.....C..C..T...........A...C.G..AT.A.........C AP012097.1_Notropis_bifrenatus_m G...........T..T..T..............A..............C........A...C.......A.........C AP012098.1_Pimephales_sp._MCZunc ............T..T......T.......T..A........C.....C........A...C.G..AT.A.........C AP012100.1_Notropis_telescopus_m ......C.....T..T..T...T.......T..A........C.....T..C.....A........A..A.........C AP012101.1_Pimephales_notatus_mi ............T..T......T.......T..A........C.....C........A...C.G..AT.A.........C AP012102.1_Pimephales_vigilax_mi ............T........GA....T..T..A..T...........C........T...C....AT.A.GC....... AP012103.1_Pogonichthys_macrolep ............T..T..TG.............C..C..C..C..T...........A...C.G..CT.A.........C AP012106.1_Richardsonius_balteat ............T..T..T..G..G.....T..C..C.....C..T.....C.....A...C.G..AT.A.........C AP012108.1_Notropis_chrosomus_mi .........C..T..T..T..GT.......T..G...........T..T........A...C....C..A.....G...C AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ............T........GA....T..T..A..T...........C........T...C....AT.A.GC....... Pimephales_vigilax_R1S3_________ ............T........GA....T..T..A..T...........C........T...C....AT.A.GC....... DQ536429.1_Notropis_stramineus_m ...T........T.................T..G..G..C..C..T..C........C........AT...........C JX910141.1_Squaliobarbus_curricu .........C..T..T..............T....................C.....A...C....A..A.......... KC351187.1_Squaliobarbus_curricu .........C..T..T..............T....................C.....A...C....A..A.......... KT278765.1_Pimephales_promelas_m ...T.....C..T..T..T..GT....T.....A........C.....T..C.....T..GC....A..A.........C KT289925.1_Pimephales_promelas_m ...T.....C..T..T..T..GT....T.....A........C.....T..C.....T..GC.G..A..A.........C KT424924.1_Rhinichthys_osculus_m ...T........T..T..T...........T..C..C.....C..T.....C.....A..G..G..AT.A........GC KU200257.1_Chanodichthys_ilishae ............T..T..T...T..........C...........T.....C.....A...C.G.....A.......... MF972070.1_Siphateles_bicolor_mo ............A..T..T...........T..A.....C..C..T.....C.....A...C....AT.A........GC MG570407.1_Notropis_chalybaeus_v ......C..C..T..T..T...T.......T..A........C.....C........A........A..A.........C MG570408.1_Notropis_bifrenatus_v G...........T..T..T..............A..............C........A...C.......A.........C MG570413.1_Notropis_heterolepis_ ............T..T......T.......T..A........C........C.....A...C....C..A.........C MG570416.1_Rhinichthys_obtusus_v ...T.....C..T..T.....G........T..C........C..T..G.....G......C.G...T.A..C.....TC MG570417.1_Rhinichthys_obtusus_v ...T.....C..T..T.....G........T..C........C..T..G.....G......C.G...T.A..C.....TC MG570420.1_Pimephales_notatus_vo ............T..T......T.......T..A........C.....C........A...C.G..AT.A.........C MG570443.1_Notropis_hudsonius_is G..T..C..C.....T.....G..G........C..G.....C........C........GC....AT.A.........C MG570444.1_Rhinichthys_atratulus ...T........T..T..............T..C.....C..C..T...........A...C.G..CT....C.....CC MG570445.1_Rhinichthys_atratulus ...T........T..T..............T..C.....C..C..T...........A...C.G..CT....C.....CC MG570447.1_Luxilus_cornutus_isol ............T..T.....GT.......T..A.....C..C.....G..C.....A...C.....T...........C MG570449.1_Luxilus_cornutus_isol ............T..T.....GT.......T..A.....C..C.....G..C.....A...C.....T...........C MG570450.1_Pimephales_notatus_is ............T..T......T.......T..A........C.....C........A...C.G..AT.A.........C MG570451.1_Notropis_bifrenatus_i G...........T..T..T..............A..............C........A...C.......A.........C MG570453.1_Exoglossum_maxillingu ...T.....C..T..T..T..GT..........C........C..T...........A........TT.A.........C MG570454.1_Pimephales_promelas_i ...T.....C..T..T..T..GT....T.....A........C.....T..C.....T..GC.G..A..A.........C MG570455.1_Notropis_atherinoides ......G.....T..T.....GT.......T..G.....C..C.....C..C.....A...C.....T.A.........C MG570456.1_Notropis_atherinoides ...T..G.....T..T.....GT.......T..G.....C..C.....C..C.....A...C.....T.A.........C MG570457.1_Pimephales_notatus_is ............T..T......T.......T..A........C.....C........A...C.G..AT.A.........C MG570458.1_Pimephales_notatus_is ............T..T......T.......T..A........C.....C........A...C.G..AT.A.........C MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v G........C..T..T..T...........TT.A........C..T..T........A...C....C..A.........C MT364325.1_Hybognathus_amarus_mi ...............T..T........T..T..A.....C..C..T..C.................AT.A..C..G...C MT501368.1_Gila_cypha_isolate_SN .........C..A..T..T...T.......T..A........C..T.....C.....A...C....AT.A.........C MT501369.1_Notropis_simus_pecose ............T..T..T..GT........T.A..G.....C..T..T........A........A..A.........C MT501378.1_Hybognathus_amarus_is ...............T..T........T..T..A.....C..C..T..C.................AT.A..C..G...C MT501385.1_Notropis_jemezanus_vo ......G.....T..T.....G........T..G.....C..C.....C........A...C.G..CT.A.........C MT501391.1_Rhinichthys_osculus_i G...........T..T..T..G........T..C..G..C..C..T..G........A..G..G..AT.A.........C MT667239.1_Rhinichthys_osculus_t G...........T..T..T..G........T..C..G..C..C..T..G........A..G..G..AT.A.........C MT667242.1_Luxilus_cornutus_vouc ............T..T.....GT.......T..A.....C..C.....G..C.....A...C.....T...........C MW300340.1_Hybognathus_placitus_ G.......................C.....T..A.....C..C.....C.....G...........A..A.....G..GC MW300341.1_Hybognathus_placitus_ G.......................T.....T..A.....C..C.....C.....G...........A..A.....G..GC NC_013763.1_Mylocheilus_caurinus G...........T..T..T..............C..C..C..C..T..G........A...C....AT.A.........C NC_033926.1_Opsopoeodus_emiliae_ ............T..T..T..G.....T.....A.....C..C..T..T.....T..A..GC.....T.A.......... NC_037008.1_Notropis_chalybaeus_ ......C..C..T..T..T...T.......T..A........C.....C........A........A..A.........C NC_037009.1_Notropis_heterolepis ............T..T......T.......T..A........C........C.....A...C....C..A.........C NC_037010.1_Rhinichthys_obtusus_ ...T.....C..T..T.....G........T..C........C..T..G.....G......C.G...T.A..C.....TC NC_037014.1_Notropis_hudsonius_i G..T..C..C.....T.....G..G........C..G.....C........C........GC....AT.A.........C NC_037015.1_Exoglossum_maxilling ...T.....C..T..T..T..GT..........C........C..T...........A........TT.A.........C NC_054086.1_Ptychocheilus_lucius ...T.....C..A..T..T...T.......T..A.....C..C..T.....C.....A...C....AT.A.........C NC_054257.1_Gila_cypha_isolate_S .........C..A..T..T...T.......T..A........C..T.....C.....A...C....AT.A.........C NC_054259.1_Gila_nigrescens_isol ............A..T..T...........T..A........C..T.....C.....A...C....A..A.........C NC_054260.1_Hybognathus_amarus_i ...............T..T........T..T..A.....C..C..T..C.................AT.A..C..G...C NC_054262.1_Notropis_jemezanus_v ......G.....T..T.....G..G.....T..G.....C..C.....C............C.G..CT.A.........C Pimephales_notatus_R2S3_________ ...T........T..T......T..........A........C.....C........A..GC.G..AT.A.....G...C Pimephales_tenellus_tenellu_R2S1 ...T..C..C..T..T..T..GT..........G..G..C..C..T..G............C....AT.A.........C Pimephales_tenellus_parvice_R2S2 ...T..C..C..T..T.....G...........A........C..T..G............C....AT.A.........C Pimephales_notatus_R1S1_________ ...T........T..T......T..........A........C.....C........A..GC.G..AT.A.....G...C MG570452.1_Pimephales_promelas_i ...T.....C..T..T..T..GT....T.....A........C.....T..C.....T..GC.G..A..A.........C MG570452.1_Pimephales_promelas_S G..T.....C..T..T..T..GT....T.....A........C.....T..C.....T..GC.G..A..A.........C AB626850.1_Megalobrama_terminali TTGCTGTACCACTATGACTTGCCACCGTAATTATTGGAATGCGAAACCAACCAACGGTTGCCCTTGGACACCTTCTACCA AP010779.1_Mylocheilus_caurinus_ ....C....................A..G........C.....G..T........A.....T........T.....G... AP011215.1_Gila_sp._1460_mitocho ....C..G..............A..A...........G.................A.....T..C..T.....AT....G AP011263.1_Scardinius_erythropht .C..C....................A...........C.................A.....T..C........C...... AP011267.1_Algansea_lacustris_mi ..........T..............A..T........C..A........G.....A.....T..C.....T..C.....T AP011268.1_Yuriria_alta_mitochon ......................T..A..T........C.................A.....T...........AT.G..C AP011273.1_Hybognathus_nuchalis_ ....C........C..G.....G..A..T........G..A..............A..C...........T..A..G..T AP011274.1_Couesius_plumbeus_mit ..........G...........T..A..C.....C..C.......CT..G...........G...........CT..... AP011275.1_Platygobio_gracilis_m .C....................T..A..C..C..C....................A..C..T..C........C...... AP011277.1_Erimystax_dissimilis_ ....C..............C.....A...........C.................A........C............... AP011279.1_Pimephales_promelas_m .............C........T..A..T........T........T..............A.....C..T........C AP011280.1_Clinostomus_elongatus .......G.................A..T........C..A.....T........A..C..T.................. AP012079.1_Luxilus_chrysocephalu .............C........T..A..T........T.................A.....T...........A.....T AP012080.1_Macrhybopsis_gelida_m .......G........G...........GG.........................A..C...........T......... AP012083.1_Notropis_atherinoides ....C....................A..T........T..A.............................T..G..G..T AP012084.1_Notropis_baileyi_mito .......G..............T..A..T..C.....C..A........G.....A..C...........T..A..G..C AP012087.1_Cyprinella_galactura_ .......G.................A..T..C.....G.....G.....G.....AA.C..............A.....C AP012088.1_Hybopsis_lineapunctat .............G........T..A...........C..A........G.....AA....T........T..A..G..T AP012090.1_Luxilus_cornutus_mito .............G..G.....T..A..T........T.................A.....T.....G.....AT....T AP012091.1_Lythrurus_ardens_mito .......G.....G..G.....T..A...........T..A..............AA....T..C..............C AP012092.1_Lythrurus_fumeus_mito ......................T..A..T........T..A....................T.................C AP012093.1_Lythrurus_lirus_mitoc .......G.....G..G.....T..A...........C.................A.....T..C..............C AP012094.1_Lythrurus_umbratilis_ .......G.....G..G.....T..A...........T..A..............AA....T.................C AP012095.1_Macrhybopsis_meeki_mi .......C.................A...G.C.......................AA................C...... AP012097.1_Notropis_bifrenatus_m .......G........G..C.....A..C..C.....T.................A..............T..A..G..T AP012098.1_Pimephales_sp._MCZunc .C...........C........T..A..C........C...........G.....A..C..T........T..A..G..C AP012100.1_Notropis_telescopus_m ....CC................T..A...........C..............G..A.....T.....T.....A.....T AP012101.1_Pimephales_notatus_mi .C...........C........T..A..C........C...........G.....A..C..T........T..A..G..C AP012102.1_Pimephales_vigilax_mi .C...........C........T..A..C.................T........A..C.......C......AT....C AP012103.1_Pogonichthys_macrolep ....C..G..G..............A...........C..A..G..T........A.....T..C...........G... AP012106.1_Richardsonius_balteat .......G.................A..T........C...........G.....A.....T.................. AP012108.1_Notropis_chrosomus_mi .......G..T...........T..A..T........T.......................T.....G.....AT....T AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .C...........C........T..A..C.................T........A..C.......C......AT....C Pimephales_vigilax_R1S3_________ .C...........C........T..A..C.................T........A..C.......C......AT....C DQ536429.1_Notropis_stramineus_m .......G.....C........T..A..C........T.................A.....T..C........AT....T JX910141.1_Squaliobarbus_curricu .C..C........T.....C..........................T........A........C........C...... KC351187.1_Squaliobarbus_curricu .C..C........T.....C..........................T........A........C........C...... KT278765.1_Pimephales_promelas_m .............C........T..A..T........T........T........A.....A.....C..T........C KT289925.1_Pimephales_promelas_m .............C........T..A..T........C........T..............A.....C..T........C KT424924.1_Rhinichthys_osculus_m .C..............G.....T..A...........C........T........A........C............... KU200257.1_Chanodichthys_ilishae .............G.....C..........................T..G.....A........C............... MF972070.1_Siphateles_bicolor_mo ....C...........G.....A..A..............A..G...........A.....T.....C.....A.....G MG570407.1_Notropis_chalybaeus_v ....C..G...T..........T..A..T........T.................A..............T..A..G..C MG570408.1_Notropis_bifrenatus_v .......G........G..C.....A..C..C.....T.................A..............T..A..G..T MG570413.1_Notropis_heterolepis_ ................G.....T..A..T........C...........G.....A.....T..C........A.....T MG570416.1_Rhinichthys_obtusus_v .......T.....C..G........A..T........C.....T...........A........C.....T...T..... MG570417.1_Rhinichthys_obtusus_v .......T.....C..G........A..T........C.....T...........A........C.....T...T..... MG570420.1_Pimephales_notatus_vo .C...........C........T..A..C........C...........G.....A..C..T........T..A..G..C MG570443.1_Notropis_hudsonius_is ....C......T....G.....T..A..T........C.................A........C...........G..T MG570444.1_Rhinichthys_atratulus .......T.....T..G........A..T.....C..C.....G...........A........C.....T...T..... MG570445.1_Rhinichthys_atratulus .......T.....T..G........A..T.....C..C.....G...........A........C.....T...T..... MG570447.1_Luxilus_cornutus_isol .............G........T..A..T........T.................A.....T...........AT....T MG570449.1_Luxilus_cornutus_isol .............G........T..A..T........T.................A.....T...........AT....T MG570450.1_Pimephales_notatus_is .C...........C........T..A..C........C...........G.....A..C..T........T..A..G..C MG570451.1_Notropis_bifrenatus_i .......G........G..C.....A..C..C.....T.................A..............T..A..G..T MG570453.1_Exoglossum_maxillingu ....C..............C.....A...........C.................A........C............... MG570454.1_Pimephales_promelas_i .............C........T..A..T........T........T..............A.....C..T........C MG570455.1_Notropis_atherinoides ....C........G...........A..T........T..A.............................T..G..G..T MG570456.1_Notropis_atherinoides ....C....................A..T........T..A.............................T..G..G..T MG570457.1_Pimephales_notatus_is .C...........C........T..A..C........C...........G.....A..C..T........T..A..G..C MG570458.1_Pimephales_notatus_is .C...........C........T..A..C........C...........G.....A..C..T........T..A..G..C MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..........T..G........T..A..T........T..A..............A..C..T.....T.....G..C..C MT364325.1_Hybognathus_amarus_mi ....C........C........A..A..T...........A........G.....A.................A..G..T MT501368.1_Gila_cypha_isolate_SN ....C..G..G...........A..A...........G.................A.....T..C..T.....GT....G MT501369.1_Notropis_simus_pecose .......G..GT.G..G..C.....A..T........T..A..............A..C...........T..A..G..C MT501378.1_Hybognathus_amarus_is ....C..G.....C........A..A..T...........A..............A.................A..G..T MT501385.1_Notropis_jemezanus_vo ....C....................A...........C..A........G..G...........C.....T..G..G..T MT501391.1_Rhinichthys_osculus_i .C..C......T....G..C..T..A...........C........T........A........C............... MT667239.1_Rhinichthys_osculus_t .C..C......T....G..C..T..A...........C........T........A........C............... MT667242.1_Luxilus_cornutus_vouc .............G........T..A..T........T.................A.....T...........AT....T MW300340.1_Hybognathus_placitus_ .............C........A..A..T........T........T..G.....A.....T..C........G..G..C MW300341.1_Hybognathus_placitus_ .............C........A..A..T........T........T..G.....A.....T..C........G..G..T NC_013763.1_Mylocheilus_caurinus ....C....................A..G........C.....G..T........A.....T........T.....G... NC_033926.1_Opsopoeodus_emiliae_ .......G.....C........T..A..T........C..A...C.......C..AA....T........T..A..G..C NC_037008.1_Notropis_chalybaeus_ ....C..G...T..........T..A..T........T.................A..............T..A..G..C NC_037009.1_Notropis_heterolepis ................G.....T..A..T........C...........G.....A.....T..C........A.....T NC_037010.1_Rhinichthys_obtusus_ .......T.....C..G........A..T........C.....T...........A........C.....T...T..... NC_037014.1_Notropis_hudsonius_i ....C......T....G.....T..A..T........C.................A........C...........G..T NC_037015.1_Exoglossum_maxilling ....C..............C.....A...........C.................A........C............... NC_054086.1_Ptychocheilus_lucius ....C..G..G...........A..A.............................A.....T..C..C.....AT....G NC_054257.1_Gila_cypha_isolate_S ....C..G..G...........A..A...........G.................A.....T..C..T.....GT....G NC_054259.1_Gila_nigrescens_isol ....C..G..G...........A..A.............................A........C..T.....AT....G NC_054260.1_Hybognathus_amarus_i ....C........C........A..A..T...........A........G.....A.................A..G..T NC_054262.1_Notropis_jemezanus_v ....C....................A...........C..A...........G.................T..G..G..T Pimephales_notatus_R2S3_________ .C...........C........T..A..T........T...........G.....A.....T........T..A.....T Pimephales_tenellus_tenellu_R2S1 .A...........C..G........A...........C.................A.....T..C.....T..C..G..C Pimephales_tenellus_parvice_R2S2 .A...........C..G........A...........C.................A.....T..C.....T..C..G..C Pimephales_notatus_R1S1_________ .C...........C........T..A..T........T...........G.....A.....T........T..A.....T MG570452.1_Pimephales_promelas_i .............C........T..A..T........T........T..............A.....C..T........C MG570452.1_Pimephales_promelas_S .............C........T..A..T........T........T..............A.....C..T........C AB626850.1_Megalobrama_terminali GAAGGGACACCTATTCCCCTAATCCCTGTACTAATTATTATCGAAACAATTAGCCTATTCATTCGCCCATTAGCCCTGGG AP010779.1_Mylocheilus_caurinus_ ..G..A..T..CC.C..TT.......G................................T.....A.............. AP011215.1_Gila_sp._1460_mitocho ..G..A..C..A..C...T..........GT.......C.....G...........G.....C..A...C.G..AT.A.. AP011263.1_Scardinius_erythropht .....C..T.....C.......................C.....G........T...........A...C....AT.A.. AP011267.1_Algansea_lacustris_mi .....A..C........T........C..........................T..G..T.....A........T..A.. AP011268.1_Yuriria_alta_mitochon .....A..C..C.....T.....T..C..........................T.....T..C..A..GC.......A.. AP011273.1_Hybognathus_nuchalis_ .....A..C........T..G..T....................G........T.....T.....A...C.G.....A.. AP011274.1_Couesius_plumbeus_mit .....A..T..C..C........T..............C..T..G..............T.....A...C....T..... AP011275.1_Platygobio_gracilis_m .....A..T..C.....T..G..T...................................T..C.....GC.G..T..A.. AP011277.1_Erimystax_dissimilis_ .....A..T........G..G..T......................................C..A........TT.A.. AP011279.1_Pimephales_promelas_m .....A..C.....C.....G..T......T.......C..............T.....T.....A..CC.G...T.A.. AP011280.1_Clinostomus_elongatus .....A..C.....C..A.....T......T.......C....................T.....A.....G...T.A.. AP012079.1_Luxilus_chrysocephalu ..G..A..T..C.....TT....T..C..G.......................T.....A.....G...C.......C.. AP012080.1_Macrhybopsis_gelida_m .....A..T.....C..T..G..T..............C....................T.....A..CC.....T.A.. AP012083.1_Notropis_atherinoides .....C..C........TT.G..T.............................T.....T.....A...........C.. AP012084.1_Notropis_baileyi_mito .....A..C........T.....T.............................T.....T.....A...C.......... AP012087.1_Cyprinella_galactura_ .....A..C.....C..T.....T........T....................TT.G..A.....A..GC.G..T..A.. AP012088.1_Hybopsis_lineapunctat ........C..............T..C.................G........T..G..T.....A...C.......A.. AP012090.1_Luxilus_cornutus_mito .....A..C..C.....TT....T....................G........T..G..T.........C.......C.. AP012091.1_Lythrurus_ardens_mito .....A..C........TT....T..C..........................T..GC.T.....A...C.....T.A.. AP012092.1_Lythrurus_fumeus_mito .....A..C........TT....T..C...T.............G........T.....T.....G..GC....G..A.. AP012093.1_Lythrurus_lirus_mitoc .....A..C.....C..TT....T...........C.................T.....A.....A...C.G...T.A.. AP012094.1_Lythrurus_umbratilis_ .....A..C........TT....T..C..........................T..GC.T.....A...C.....T.A.. AP012095.1_Macrhybopsis_meeki_mi .....A..T..C..C..G....................C....................T.....A...C.....T.A.. AP012097.1_Notropis_bifrenatus_m .....A..C........TT....T.............................T..C..T.....A...C.C...T.... AP012098.1_Pimephales_sp._MCZunc .....A..C........TT....T......T....C.................TT....T.....A...C.......C.. AP012100.1_Notropis_telescopus_m .....A..C.....C..TT....T...........C.................T.....A.....A..T........T.. AP012101.1_Pimephales_notatus_mi .....A..C........TT....T.....GT......................TT....T.....A...C.......... AP012102.1_Pimephales_vigilax_mi .....A..C..C.....TT....T......T..........T...........TT....T.....A...C.......... AP012103.1_Pogonichthys_macrolep ........C..CC..........T..............C..........................A...........A.. AP012106.1_Richardsonius_balteat ..G..A..C..............T......T.......C..........................A...C.......A.. AP012108.1_Notropis_chrosomus_mi .....A..T........T...........G..........................G..A..C..G........T..A.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .....A..C..C.....TT....T......T..........T...........TT....T.....A...C.......... Pimephales_vigilax_R1S3_________ .....A..C..C.....TT....T......T..........T...........TT....T.....A...C.......... DQ536429.1_Notropis_stramineus_m ..G..A..C.....C..TT.G..........................G.................A...C....T..A.. JX910141.1_Squaliobarbus_curricu .....A.....C..C.....G..T..............C...........C.....G..T.....G..TC.G.....A.. KC351187.1_Squaliobarbus_curricu .....A.....C..C.....G..T..............C...........C.....G..T.....G..TC.G.....A.. KT278765.1_Pimephales_promelas_m .....A..C...........G..T......T....C..C..............T.....T.....A..CC.G...T.A.. KT289925.1_Pimephales_promelas_m .....A..C.....C.....G..T......T......................T.....T.....G..CC.G...T.A.. KT424924.1_Rhinichthys_osculus_m ..G..A..C...........G.........T.............G........T.....T.....G..GC.G...T.A.. KU200257.1_Chanodichthys_ilishae .....A..G........T........C................................T.....A.............. MF972070.1_Siphateles_bicolor_mo ..G..A..C..A..C...T...........T.G.....C.......................C......C.G..G..A.. MG570407.1_Notropis_chalybaeus_v .....A..C........TT..........G..............G........T.....T.....A...C.......A.. MG570408.1_Notropis_bifrenatus_v .....A..C........TT....T.............................T..C..T.....A...C.C...T.... MG570413.1_Notropis_heterolepis_ .....A..C........TT....T.....T.......................T.....T.....A..GC.......A.. MG570416.1_Rhinichthys_obtusus_v ........C...........G..T......T.........................G.....C..A...C.......A.. MG570417.1_Rhinichthys_obtusus_v ........C...........G..T......T.........................G.....C..A...C.......A.. MG570420.1_Pimephales_notatus_vo .....A..C........TT....T......T....C.................TT....T.....A...C.......C.. MG570443.1_Notropis_hudsonius_is .....A..C..C.....TT.G..............C..C..............T.....T.....A.....G.....A.. MG570444.1_Rhinichthys_atratulus ..G.....C.....................T............................T..C..A...C.G........ MG570445.1_Rhinichthys_atratulus ..G.....C.....................T............................T..C..A...C.G........ MG570447.1_Luxilus_cornutus_isol .....A..C..C.....TT....T.............................T..G..T.........C.......C.. MG570449.1_Luxilus_cornutus_isol .....A..C..C.....TT....T.............................T..G..T.........C.......C.. MG570450.1_Pimephales_notatus_is .....A..C........TT....T......T....C.................TT....T.....A...C.......C.. MG570451.1_Notropis_bifrenatus_i .....A..C........TT....T.............................T..C..T.....A...C.C...T.... MG570453.1_Exoglossum_maxillingu .....A..T........G..G..T......................................C..A........TT.A.. MG570454.1_Pimephales_promelas_i .....A..C.....C...T.G..T......T......................T.....T.....A..CC.G...T.A.. MG570455.1_Notropis_atherinoides .....C..C........TT.G..T.............................T.....T.....A...........C.. MG570456.1_Notropis_atherinoides .....C..C........TT.G..T.............................T.....T.....A...........C.. MG570457.1_Pimephales_notatus_is .....A..C........TT....T......T....C.................TT....T.....A...C.......C.. MG570458.1_Pimephales_notatus_is .....A..C........TT....T......T....C.................TT....T.....A...C.......C.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .....A..C........T.....T.....G..............G........T.....T..C..A.....G.....A.. MT364325.1_Hybognathus_amarus_mi .....A..C..C.....TT.G..T....................G........T.....T.....A...C.......A.. MT501368.1_Gila_cypha_isolate_SN ..G..A..C..A..C...T..........GT.......C.....G...........G.....C..A...C.G..GT.A.. MT501369.1_Notropis_simus_pecose ........C..C.....T.....T..C..C..T....................T.....T.....A...C.G........ MT501378.1_Hybognathus_amarus_is .....A..C..C.....TT.G..T....................G........T.....T.....A...C.......A.. MT501385.1_Notropis_jemezanus_vo .....A..C.....C..TT.G..T.............................T.....T.....A...........C.. MT501391.1_Rhinichthys_osculus_i ........C..C..C.....G..............C.....T..G..............T.....A...C.....T.A.. MT667239.1_Rhinichthys_osculus_t ........C..C..C.....G..............CG....T..G..............T.....A...C.....T.A.. MT667242.1_Luxilus_cornutus_vouc .....A..C..C.....TT....T.............................T..G..T.........C.......C.. MW300340.1_Hybognathus_placitus_ .....A..C..C.....TT.G..T.............................T.....T.....A.....G.....A.. MW300341.1_Hybognathus_placitus_ .....A..C..C.....TT.G..T.............................T.....T.....A.....G.....A.. NC_013763.1_Mylocheilus_caurinus ..G..A..T..CC.C..TT.......G................................T.....A.............. NC_033926.1_Opsopoeodus_emiliae_ .....A..C........TT....T......T......................T..C..T.....G...C.......T.. NC_037008.1_Notropis_chalybaeus_ .....A..C........TT..........G..............G........T.....T.....A...C.......A.. NC_037009.1_Notropis_heterolepis .....A..C........TT....T.....T.......................T.....T.....A..GC.......A.. NC_037010.1_Rhinichthys_obtusus_ ........C...........G..T......T.........................G.....C..A...C.......A.. NC_037014.1_Notropis_hudsonius_i .....A..C..C.....TT.G..............C..C..............T.....T.....A.....G.....A.. NC_037015.1_Exoglossum_maxilling .....A..T........G..G..T......................................C..A........TT.A.. NC_054086.1_Ptychocheilus_lucius ..G..A..C..A..C...T..........GT.............G...........G.....C..A...C.G..AT.A.. NC_054257.1_Gila_cypha_isolate_S ..G..A..C..A..C...T..........GT.......C.....G...........G.....C..G...C.G..GT.A.. NC_054259.1_Gila_nigrescens_isol ..G..A..C..A..C...T..........GT.......C.....G...........G.....C..A...C.G..AT.A.. NC_054260.1_Hybognathus_amarus_i .....A..C..C.....TT.G..T....................G........T.....T.....A...C.......A.. NC_054262.1_Notropis_jemezanus_v .....A..C.....C..TT.G..T.............................T.....T.....A...........C.. Pimephales_notatus_R2S3_________ .....A..C........TT....T......T......................T.....T.....A...C.......A.. Pimephales_tenellus_tenellu_R2S1 .....A..C........TT....T......T...................C..T.....T.....A...........A.. Pimephales_tenellus_parvice_R2S2 .....A..C........TT....T......T......................T.....T.....A...........A.. Pimephales_notatus_R1S1_________ .....A..C........TT....T......T......................T.....T.....A...C.......A.. MG570452.1_Pimephales_promelas_i .....A..C.....C.....G..T......T......................T.....T.....A..CC.G...T.A.. MG570452.1_Pimephales_promelas_S .....A..C.....C.....G..T......T.......C..............T.....T.....A..CC.G...T.A.. AB626850.1_Megalobrama_terminali CGTTCGACTTACAGCCAACTTGACTGCGGGTCACTTATTAATTCAACTCATCGCCACAGCTGTATTTGTTCTACTACCAA AP010779.1_Mylocheilus_caurinus_ G..C.................A.....A..C...C..C.G..C.....T...........C.....C..AT..T....C. AP011215.1_Gila_sp._1460_mitocho A..C........G.....T........A..C...C....G........T.....T..C...........A...T....CC AP011263.1_Scardinius_erythropht A..C.....C..............C..A..C...C..C.............T........C.....C..AT.GT....C. AP011267.1_Algansea_lacustris_mi G..C...............C..........C..TC.TC.T........T..T.....G..C.....C..AT.......G. AP011268.1_Yuriria_alta_mitochon G...........C......C.......A.....TC.TC.T........T....................GT..T....T. AP011273.1_Hybognathus_nuchalis_ G..C.....C...........A.....A......C.TC.T........T...........C.................T. AP011274.1_Couesius_plumbeus_mit A..C....................C..T......C.TC......................C........GT..A.G..T. AP011275.1_Platygobio_gracilis_m G..C........G..T..TC.A.....A.....TC..C.............T........C........C.....G.... AP011277.1_Erimystax_dissimilis_ G..C.....C.....T...C.A.....A..C...C..C....C........T.....C..C.....C..AT..T....C. AP011279.1_Pimephales_promelas_m ...A.................A.....A..C...C.TC.T........T...........C........CT.......C. AP011280.1_Clinostomus_elongatus A..C..G..............A.....A..C...C..C.T........T...........C.....C..GT....G..C. AP012079.1_Luxilus_chrysocephalu A..C..............................C.TC.T..............T.....C.....C..A.....C..C. AP012080.1_Macrhybopsis_gelida_m A..C...........T..T..A.....A......C..C..........T..T.................GT..T....T. AP012083.1_Notropis_atherinoides A..C.................A.....A..C...C.CC.T........T...........C........A..T..C..C. AP012084.1_Notropis_baileyi_mito G..C.......................A..C...C.TC.T...........T.....G..C.....C.....G.....C. AP012087.1_Cyprinella_galactura_ A..C..G..............A.....A......C.TC.C........T.....T..G..C...........TT....TT AP012088.1_Hybopsis_lineapunctat A..C...........T.....A.....A..C...C.GC.T........T........G..C........C..T..T..T. AP012090.1_Luxilus_cornutus_mito G..C.....C...........A.....A......C.TC.T........T...........C..G..C..A.....C..C. AP012091.1_Lythrurus_ardens_mito G..........................A.....TC.TC.T........T........G...........A........T. AP012092.1_Lythrurus_fumeus_mito A..................C.......A.....TC.TC.T........T...........C..............G..T. AP012093.1_Lythrurus_lirus_mitoc G..........................A.....TC.TC.T........T.....T..G..C........A........T. AP012094.1_Lythrurus_umbratilis_ G.................T........A.....TC.TC.T........T........G...........A..G.....T. AP012095.1_Macrhybopsis_meeki_mi A..C.....C.....T..T..A.....A..C...C.............T..T........C........GT.......T. AP012097.1_Notropis_bifrenatus_m A..C.................A.....C..C..TC.TC.T........T..T........C........G.....G..T. AP012098.1_Pimephales_sp._MCZunc G..A.................A.....A..C...C.TC.T........T...........C...........C.....C. AP012100.1_Notropis_telescopus_m G..C.................A...........TC.TC.C........T...........C..G..C..C..T..G..T. AP012101.1_Pimephales_notatus_mi G..A.................A.....A..C...C.TC.T........T...........C...........C.....T. AP012102.1_Pimephales_vigilax_mi A..A.....C...........A.....A..A..TC.TC.C........T....................C..TAC.T... AP012103.1_Pogonichthys_macrolep G..C.................A.....A.....TC..C....C.....T...........C.....C......T.G..C. AP012106.1_Richardsonius_balteat G..C...............C.A.....A..C...C..C.T........T...........C.....C..AT..T....C. AP012108.1_Notropis_chrosomus_mi A....................A.....C......C.TC.T.....G..T..T........C.................C. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ A..A.....C...........A.....A..A..TC.TC.C........T....................C..TAC.T... Pimephales_vigilax_R1S3_________ A..A.....C...........A.....A..A..TC.TC.C........T....................C..TAC.T... DQ536429.1_Notropis_stramineus_m A..C........C...........C.....C...C.TC.T..C.....T..T........C.....C..CT.......C. JX910141.1_Squaliobarbus_curricu .........C...........A.....A..C.................A..T..T..............C........C. KC351187.1_Squaliobarbus_curricu .........C...........A.....A..C.................A..T..T..............C........C. KT278765.1_Pimephales_promelas_m A..A.................A.....A......C.TC.T........T...........C.........T.G.....C. KT289925.1_Pimephales_promelas_m G..A.................A.....A..C...C.TC.T........T...........C........CT.......C. KT424924.1_Rhinichthys_osculus_m A...........C......C.A.....A......C.............T.................C..AT....G..T. KU200257.1_Chanodichthys_ilishae T....................A.....C..C.......................................T....G.... MF972070.1_Siphateles_bicolor_mo A..C..............T..A.....A......C....G.................C.....T.....A...T....CC MG570407.1_Notropis_chalybaeus_v A..C..G.................C..A..C...C.TC.T........T..T.....G..C...........GT....T. MG570408.1_Notropis_bifrenatus_v A..C.................A.....C..C..TC.TC.T........T..T........C........G.....G..T. MG570413.1_Notropis_heterolepis_ ...C.......................A......C.TC.T........T...........C.....C.....G.....T. MG570416.1_Rhinichthys_obtusus_v G..C...............C.......A..C...C.GC.G..C........T........C..G..C..GT..T.G.... MG570417.1_Rhinichthys_obtusus_v G..C...............C.......A..C...C.GC.G..C........T........C..G..C..GT..T.G.... MG570420.1_Pimephales_notatus_vo G..A.................A.....A..C...C.TC.T........T...........C...........C.....C. MG570443.1_Notropis_hudsonius_is G.................TC.A.....A.....TC.TC.T........T..T.................A.......... MG570444.1_Rhinichthys_atratulus A..C...............C.......A..C...C.GC....C........T........C........AT..T.G..C. MG570445.1_Rhinichthys_atratulus A..C...............C.......A..C...C.GC....C........T........C........AT..T.G..C. MG570447.1_Luxilus_cornutus_isol G..C.................A.....A......C.TC.T........T...........C..G..C..A.....C..C. MG570449.1_Luxilus_cornutus_isol G..C.................A.....A......C.TC.T........T...........C..G..C..A.....C..C. MG570450.1_Pimephales_notatus_is G..A.................A.....A..C...C.TC.T........T...........C...........C.....C. MG570451.1_Notropis_bifrenatus_i A..C.................A.....C..C..TC.TC.T........T..T........C........G.....G..T. MG570453.1_Exoglossum_maxillingu G..C.....C.....T...C.A.....A..C...C..C....C........T.....C..C.....C..AT..T....C. MG570454.1_Pimephales_promelas_i G..A.................A.....A..C...C.TC.T........T...........C........CT.......C. MG570455.1_Notropis_atherinoides A..C.................A.....A..C...C.CC.T........T...........C........A..T..C..C. MG570456.1_Notropis_atherinoides A..C.................A.....A..C...C.CC.T........T...........C........A..T..C..C. MG570457.1_Pimephales_notatus_is G..A.................A.....A..C...C.TC.T........T...........C...........C.....C. MG570458.1_Pimephales_notatus_is G..A.................A.....A..C...C.TC.T........T...........C...........C.....C. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v G..C.....C..G........A.....A..C..TC.CC.T........T..T....................T.....C. MT364325.1_Hybognathus_amarus_mi A..C.....C...........A.....A..C...C.TC.T........T..T.....G..C.....C.....GT....TG MT501368.1_Gila_cypha_isolate_SN A..C........G.....T..A.....A..C...C....G........T.....T..C.....C.....A..GT....CC MT501369.1_Notropis_simus_pecose G....................A.....A......C.TC.C.....G.....T.....G..C.................C. MT501378.1_Hybognathus_amarus_is A..C.....C...........A.....A..C...C.TC.T........T..T.....G..C.....C.....GT....T. MT501385.1_Notropis_jemezanus_vo A..C..G.....G........A.....A......C.TC.T........T........G..C........A..T..C..T. MT501391.1_Rhinichthys_osculus_i A.....G.....G......C.A..G..A......C..C.............T.................AT..T....T. MT667239.1_Rhinichthys_osculus_t A.....G..A..G......C.A.....A......C..C.............T.................AT..T....T. MT667242.1_Luxilus_cornutus_vouc G..C.................A.....A......C.TC.T........T...........C..G..C..A.....C..C. MW300340.1_Hybognathus_placitus_ G..C.................A.....A......C.TC.T........T...........C.....C..CT....G..T. MW300341.1_Hybognathus_placitus_ G..C.................A.....A......C.TC.T........T...........C.....C..AT....G..T. NC_013763.1_Mylocheilus_caurinus G..C.................A.....A..C...C..C.G..C.....T...........C.....C..AT..T....C. NC_033926.1_Opsopoeodus_emiliae_ G..A...........T.....A.....A......C.GC.T........T..T........C........A........T. NC_037008.1_Notropis_chalybaeus_ A..C..G.................C..A..C...C.TC.T........T..T.....G..C...........GT....T. NC_037009.1_Notropis_heterolepis ...C.......................A......C.TC.T........T...........C.....C.....G.....T. NC_037010.1_Rhinichthys_obtusus_ G..C...............C.......A..C...C.GC.G..C........T........C..G..C..GT..T.G.... NC_037014.1_Notropis_hudsonius_i G.................TC.A.....A.....TC.TC.T........T..T.................A.......... NC_037015.1_Exoglossum_maxilling G..C.....C.....T...C.A.....A..C...C..C....C........T.....C..C.....C..AT..T....C. NC_054086.1_Ptychocheilus_lucius A..C........G.....T..A............C.............T..T.....C...........A..GT....CC NC_054257.1_Gila_cypha_isolate_S A..C........G.....T..A.....A..C...C....G........T.....T..C.....C.....A..GT....CC NC_054259.1_Gila_nigrescens_isol A..C........G........A.....A......C....G........T.....T..C...........G..GT....CC NC_054260.1_Hybognathus_amarus_i A..C.....C...........A.....A..C...C.TC.T........T..T.....G..C.....C.....G.....T. NC_054262.1_Notropis_jemezanus_v A..C..G.....G........A.....A......C.TC.T........T........G..C........A..T..C..T. Pimephales_notatus_R2S3_________ A..A.................A.....A..C...C.TC.T........T...........C.....C.....C.....C. Pimephales_tenellus_tenellu_R2S1 A..A........G........A.....A......C.TC.T........T...........C.....C.....GT...... Pimephales_tenellus_parvice_R2S2 A..A.................A.....A..C...C.TC.T........T...........C.....C.....GT...... Pimephales_notatus_R1S1_________ A..A.................A.....A..C...C.TC.T........T...........C.....C.....C.....C. MG570452.1_Pimephales_promelas_i G..A.................A.....A..C...C.TC.T........T...........C........CT.......C. MG570452.1_Pimephales_promelas_S ...A.................A.....A..C...C.TC.T........T...........C........CT.......C. AB626850.1_Megalobrama_terminali TAATGCCCACAGTGGCCATCTTAACCGCCACCGTTCTCTTCCTCCTAACACTCCTAGAAGTCGCAGTAGCAATAATCCAA AP010779.1_Mylocheilus_caurinus_ ....A..G.....A..G...C....A...G....C..A.....TT.......T........T..............T... AP011215.1_Gila_sp._1460_mitocho ....A..A..G..A......C........G....C..T......T.......T..G..G..T..G...........T... AP011263.1_Scardinius_erythropht .......A.....A..A..TC....T..TG.......T...T.AT....G...........T.....G..C.....T..G AP011267.1_Algansea_lacustris_mi .G.....G..T.....A...C.T...........C..T.....TT....C..T.....G..T...........G..T... AP011268.1_Yuriria_alta_mitochon ....A..A..T..A..G...C....A........C...........G..T..T........T.................. AP011273.1_Hybognathus_nuchalis_ .......T..T..A..A...C.T..G...G....C.........T.......T........T..G........G..T... AP011274.1_Couesius_plumbeus_mit ....A..A..C..A..A...C.G......G.T..A.....T..A........T........T..G..G.....G..T..G AP011275.1_Platygobio_gracilis_m .G..A..A..T..A..A..T.....G...G....C........TT................T..............T... AP011277.1_Erimystax_dissimilis_ .......AG.C..A..A...C....G..TG....A..A.....TT.......T........T..G...........T..G AP011279.1_Pimephales_promelas_m ....A..A..G..C..A...C.T..A...G....C..A......T....G...........T..............T... AP011280.1_Clinostomus_elongatus ....A..A..G..A..T..TC....G..TG.T..C..G.....TT.......T........T..............T... AP012079.1_Luxilus_chrysocephalu .G..A..A..T.....A...C....A...G....C........TT.......T.....G..T..............T... AP012080.1_Macrhybopsis_gelida_m ....A..A..T..A..A..T.....A..T.TT..G........TT.......A........T..............T... AP012083.1_Notropis_atherinoides .G.....A..T..C..G..TC.C..A...G....C........TT....G..T..........................G AP012084.1_Notropis_baileyi_mito ....A..A..C.....A...C.T..A...G.T...........T........T........T..............T... AP012087.1_Cyprinella_galactura_ ....A..A..T..A..AT..C.T..A..TG....C..A.....T..G.....T........T.................. AP012088.1_Hybopsis_lineapunctat ....A..A..T.....A...C.T..A...GT...A........TT.......T.......................T... AP012090.1_Luxilus_cornutus_mito ....A..A..T..A..G...C....A...G....C........TT.......T.....G..T.................. AP012091.1_Lythrurus_ardens_mito .......A..C..A..A...C.T..A...G....C........T.....G..T........T..............T... AP012092.1_Lythrurus_fumeus_mito .......A..T..A..AG..C.C..A...G....C..A.....TT.......T........T..............T... AP012093.1_Lythrurus_lirus_mitoc .......A..C..A..A...C.T..A..TG.T..C.........T....G..T........T........C.....T... AP012094.1_Lythrurus_umbratilis_ .......A..C..A..A...C.T..A...G....C........T.....G..T........T..............T... AP012095.1_Macrhybopsis_meeki_mi ....A..A..C..A..A..T.....G..T.TT..G..T.....TT................T..G..G............ AP012097.1_Notropis_bifrenatus_m ....A..A..T..A..A...C.T..G...G.T..A..G.....TT.......T........T.................. AP012098.1_Pimephales_sp._MCZunc ....A.....T..A..A...C.T..A...G....C..A.....TT.......T........T..............T... AP012100.1_Notropis_telescopus_m .G..A..A..T..A..A...C.T..A...G....C........TT.......T.....G..T...........G..T... AP012101.1_Pimephales_notatus_mi ....A.....T..A..A...C.T..G...G....C..A.....TT.......T........T..............T... AP012102.1_Pimephales_vigilax_mi .T..A..T..TT.A..A...C.T..A....T.A.C.....T...T.......T.....G..T..............T... AP012103.1_Pogonichthys_macrolep .C.....A.....A..A...C....A...G....C..G..............T........T..............T..G AP012106.1_Richardsonius_balteat ....A..A..G..A..A..TC....A...G....C..A.....TT....G..T........T..G...........T... AP012108.1_Notropis_chrosomus_mi .G..A..A..C..A..G...C.C..G...G.T..C..T.....TT............................G...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .T..A..T..TT.A..A...C.T..A....T.A.C.....T...T.......T.....G..T..............T... Pimephales_vigilax_R1S3_________ .T..A..T..TT.A..A...C.T..A....T.A.C.....T...T.......T.....G..T..............T... DQ536429.1_Notropis_stramineus_m .G.....A..T.....A...C.T..A...GT............T.....G...........T..G..C..G.....T... JX910141.1_Squaliobarbus_curricu ....A..A........A........T..T.TT.....A......................................T... KC351187.1_Squaliobarbus_curricu ....A..A........A........T..T.TT.....A......................................T... KT278765.1_Pimephales_promelas_m ....A..A..G..C..A...C.T..A...G....C..A......T....G...........T..............T... KT289925.1_Pimephales_promelas_m ....A..A.....C..A...C.T..A...G....C..A......T....G...........T..............T... KT424924.1_Rhinichthys_osculus_m .G..A..A..C.....A...C....A...GT...C........TT.G.....T........T.....G........T... KU200257.1_Chanodichthys_ilishae ....A..T.....A......C.......................................................T... MF972070.1_Siphateles_bicolor_mo ....A..A.....A......C.......TG.......T......T....G..T.....G..T..G........G..T... MG570407.1_Notropis_chalybaeus_v ....A..A..C.....A...C.C..A...G.T.....A.....TT....G..T.....G..T..............T... MG570408.1_Notropis_bifrenatus_v ....A..A..T..A..A...C.T..G...G.T..A..G.....TT.......T........T.................. MG570413.1_Notropis_heterolepis_ .T..A..AG.T..A..A..TCCT..G...G..A.C..T.....TT....G..T........T.................. MG570416.1_Rhinichthys_obtusus_v .......A.....A..A...C.G..A...G.T..G........T........TT.......T..............T... MG570417.1_Rhinichthys_obtusus_v .......A.....A..A...C.G..A...G.T..G........T........TT.......T..............T... MG570420.1_Pimephales_notatus_vo ....A.....T..A..A...C.T..A...G....C..A.....TT.......T........T..............T... MG570443.1_Notropis_hudsonius_is .G..A..A..C.....A...C....A...G....C..A..T...T....G..T........T.....G........T... MG570444.1_Rhinichthys_atratulus .......A.....A..A...C.C..A...G....A..T.....TT.......TT.......T..............T... MG570445.1_Rhinichthys_atratulus .......A.....A..A...C.C..A...G....A..T.....TT.......TT.......T..............T... MG570447.1_Luxilus_cornutus_isol ....A..A..T..A..G...C....A...G....C........TT.......T.....G..T..............T... MG570449.1_Luxilus_cornutus_isol ....A..A..T..A..G...C....A...G....C........TT.......T.....G..T..............T... MG570450.1_Pimephales_notatus_is ....A.....T..A..A...C.T..A...G....C..A.....TT.......T........T..............T... MG570451.1_Notropis_bifrenatus_i ....A..A..T..A..A...C.T..G...G.T..A..G..T..TT.......T........T.................. MG570453.1_Exoglossum_maxillingu .......AG.C..A..A...C....G..TG....A..A.....TT.......T........T..G...........T..G MG570454.1_Pimephales_promelas_i ....A..A.....C..A...C.T..A...G....C..A......T....G...........T..............T... MG570455.1_Notropis_atherinoides .G.....A..T..C..G..TC.C..A...G....C........TT....G..T..........................G MG570456.1_Notropis_atherinoides .G.....A..T..C..G..TC.C..A...G....C........TT....G..T..........................G MG570457.1_Pimephales_notatus_is ....A.....T..A..A...C.T..A...G....C..A.....TT.......T........T..............T... MG570458.1_Pimephales_notatus_is ....A.....T..A..A...C.T..A...G....C..A.....TT.......T........T..............T... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ....A..A..C..A..A...C.T..G...G.T..C........TT.......T.....G..T...........G..T... MT364325.1_Hybognathus_amarus_mi .......T..T..A..A...C.T..G...G....C..T......T.......TT.......T..G...........T... MT501368.1_Gila_cypha_isolate_SN ....A..A.....A......C........G....C..T......T.......T..G..G..T..G...........T..G MT501369.1_Notropis_simus_pecose .......A..C..A..AGC.C.C..G...G.T..C........TT....G..T.....G..T........G..G.....G MT501378.1_Hybognathus_amarus_is .......T..T..A..A...C.T..G...G....C..T......T.......TT.......T..G...........T... MT501385.1_Notropis_jemezanus_vo ....A..G..T..C..A..TC.C..A...G....C.....T..GT....G..T..........................G MT501391.1_Rhinichthys_osculus_i .......A..C.....A...C.G..A...GT...C........TT.......TT....G..T..G........G..T... MT667239.1_Rhinichthys_osculus_t .......A..C.....A...C.G..A...GT...C........TT.......TT....G..T..G........G..T... MT667242.1_Luxilus_cornutus_vouc ....A..A..T..A..G...C....A...G....C........TT.......T.....G..T..............T... MW300340.1_Hybognathus_placitus_ ....A..A..T..A..A...C.T..G..TG....C........TT.......T.....G..T..............T... MW300341.1_Hybognathus_placitus_ ....A..A..T..A..A...C.T..G..TG....C........TT.......T.....G..T..............T... NC_013763.1_Mylocheilus_caurinus ....A..G.....A..G...C....A...G....C..A.....TT.......T........T..............T... NC_033926.1_Opsopoeodus_emiliae_ .T..A..AG.T.....A...C.T..A...G....A..A..TA.AT....T..T........T..............T... NC_037008.1_Notropis_chalybaeus_ ....A..A..C.....A...C.C..A...G.T.....A.....TT....G..T.....G..T..............T... NC_037009.1_Notropis_heterolepis .T..A..AG.T..A..A..TCCT..G...G..A.C..T.....TT....G..T........T.................. NC_037010.1_Rhinichthys_obtusus_ .......A.....A..A...C.G..A...G.T..G........T........TT.......T..............T... NC_037014.1_Notropis_hudsonius_i .G..A..A..C.....A...C....A...G....C..A..T...T....G..T........T.....G........T... NC_037015.1_Exoglossum_maxilling .......AG.C..A..A...C....G..TG....A..A.....TT.......T........T..G...........T..G NC_054086.1_Ptychocheilus_lucius ....A..A.....A......C.............C..T......T.......T..G..GA.T..G...........T... NC_054257.1_Gila_cypha_isolate_S ....A..A.....A......C........G....C..T......T.......T..G..G..T..G...........T..G NC_054259.1_Gila_nigrescens_isol .G..A..A.....A......C........G....C.........T.......T.....G..T..............T... NC_054260.1_Hybognathus_amarus_i .......T..T..A..A...C.T..G...G....C..T......T.......TT.......T..G...........T... NC_054262.1_Notropis_jemezanus_v .G..A..G..T..C..A..TC.C..A...G....C.....T..GT....G..T..........................G Pimephales_notatus_R2S3_________ ....A..T..T..A..A...C.T..G...G....C..A.....TT.......T........T..............T... Pimephales_tenellus_tenellu_R2S1 ....A..A.....A..AC..C.T..A...G....C..A.....A........T........T.....C............ Pimephales_tenellus_parvice_R2S2 ....A..A.....A..AC..C.T..A...G....C..A.....A........T........T.....C............ Pimephales_notatus_R1S1_________ ....A..T..T..A..A...C.T..G...G....C..A.....TT.......T........T..............T... MG570452.1_Pimephales_promelas_i ....A..A.....C..A...C.T..A...G....C..A......T....G...........T..............T... MG570452.1_Pimephales_promelas_S ....A..A..G..C..A...C.T..A...G....C..A......T....G...........T..............T... AB626850.1_Megalobrama_terminali GCTTATGTATTCGTACTACTCCTAAGCCTCTACCTGCAAGAAAACGTCTAATGGCCCACCAAGCACATGCATATCATATG AP010779.1_Mylocheilus_caurinus_ .....C.....T...T..........T....................T................................ AP011215.1_Gila_sp._1460_mitocho ..C..C.....T...T...............................T................................ AP011263.1_Scardinius_erythropht ..C..C.....T.....G..............T..............T................................ AP011267.1_Algansea_lacustris_mi ..C..C..G..T..G..............T...A.......G..................................C... AP011268.1_Yuriria_alta_mitochon ..C..C..G..T.....G..............TA.............T................................ AP011273.1_Hybognathus_nuchalis_ ..C........T..T.....T....................G.....T................................ AP011274.1_Couesius_plumbeus_mit ..C..C..T..............G........T..............T................................ AP011275.1_Platygobio_gracilis_m ..C.....T......T.G...........T...A.............T............................C... AP011277.1_Erimystax_dissimilis_ ..C..C..C..T..G.................TT.A.....G...................................... AP011279.1_Pimephales_promelas_m ..C........T...T....T...........TT.A...........T................................ AP011280.1_Clinostomus_elongatus ..C...........GT................TT.......G.....T................................ AP012079.1_Luxilus_chrysocephalu ..C..C..G..T.....G..............TA....G........T................G............... AP012080.1_Macrhybopsis_gelida_m ..C.....G..T...T.GT.AT...........T.A............................................ AP012083.1_Notropis_atherinoides ..C..C..G..T.....G..............TA.............T........................T....... AP012084.1_Notropis_baileyi_mito ..C..C.....T..T........G.....T..T..A.....G.....T................G............... AP012087.1_Cyprinella_galactura_ ..C..C..C....................T..TT.A..G........T................G............... AP012088.1_Hybopsis_lineapunctat ..C.....G..T...T.....T.......T..T..A............................G...........C..A AP012090.1_Luxilus_cornutus_mito ..C..C..G..T.....G..............TA....G........T................G............... AP012091.1_Lythrurus_ardens_mito ..C..C..G..T..G..................A.A..G........T................G............... AP012092.1_Lythrurus_fumeus_mito ..C..C..G..T....................TA....G........T................G............... AP012093.1_Lythrurus_lirus_mitoc ..C.....G..T..G..................A.A..G........T................G............... AP012094.1_Lythrurus_umbratilis_ ..C..C..G..T..G..................A.A..G........T................G............... AP012095.1_Macrhybopsis_meeki_mi ..C........T...T..T.A........T..TT.A........................................C... AP012097.1_Notropis_bifrenatus_m ..C..C..C..T.....G..T..T........TA.A..G........T............................C... AP012098.1_Pimephales_sp._MCZunc ..C..C.....T..G..G..T...........T..A...........T............................C... AP012100.1_Notropis_telescopus_m ..C..C..G..T..G.................T..A..G........T................G............... AP012101.1_Pimephales_notatus_mi ..C..C.....T..G..G..T...........T..A...........T............................C... AP012102.1_Pimephales_vigilax_mi ..C..C.....T.....G...........T.....A...........T................................ AP012103.1_Pogonichthys_macrolep ..C..C.....T..GT.......G..T..................A.T................................ AP012106.1_Richardsonius_balteat ..C..C.....T..GT...................A..G........T................................ AP012108.1_Notropis_chrosomus_mi ..C..C..G..T...T...................A..G........T............................C... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..C..C.....T.....G...........T.....A...........T................................ Pimephales_vigilax_R1S3_________ ..C..C.....T.....G...........T.....A...........T................................ DQ536429.1_Notropis_stramineus_m ..C..C..G..T.........T.......T..T..A..G..G.....T................G...........C... JX910141.1_Squaliobarbus_curricu .....C...........G.............................T................................ KC351187.1_Squaliobarbus_curricu .....C...........G.............................T................................ KT278765.1_Pimephales_promelas_m ..C........T...T....T...........TT.A...........T................................ KT289925.1_Pimephales_promelas_m ..C........T........T...........TT.A...........T................................ KT424924.1_Rhinichthys_osculus_m ..C..C.....T...T.............T..T.....G..G.....T................G............... KU200257.1_Chanodichthys_ilishae ...........T............G...A................................................... MF972070.1_Siphateles_bicolor_mo ..C..C.....T....................T..A...........T................................ MG570407.1_Notropis_chalybaeus_v ..C..C..G..T.....G..T........T..T..A..G........T................................ MG570408.1_Notropis_bifrenatus_v ..C..C..C..T.....G..T..T........TA.A..G........T............................C... MG570413.1_Notropis_heterolepis_ ..C..C.....T.....G..T...........T.....G........T.........................C...... MG570416.1_Rhinichthys_obtusus_v ..C..C.....T...T.............T........G..G.....T................................ MG570417.1_Rhinichthys_obtusus_v ..C..C.....T...T.............T........G..G.....T................................ MG570420.1_Pimephales_notatus_vo ..C..C.....T..G..G..T...........T..A...........T............................C... MG570443.1_Notropis_hudsonius_is ..C..C..C............T.......T...A.A............................G............... MG570444.1_Rhinichthys_atratulus ..C..C.....T...T.............T..T.....G..G.....T............................C... MG570445.1_Rhinichthys_atratulus ..C..C.....T...T.............T..T.....G..G.....T............................C... MG570447.1_Luxilus_cornutus_isol ..C..C..G..T.....G..............TA....G........T................G............... MG570449.1_Luxilus_cornutus_isol ..C..C..G..T.....G..............TA....G........T................G............... MG570450.1_Pimephales_notatus_is ..C..C.....T..G..G..T...........T..A...........T............................C... MG570451.1_Notropis_bifrenatus_i ..C..C..C..T.....G..T..T........TA.A..G........T............................C... MG570453.1_Exoglossum_maxillingu ..C..C..C..T..G.................TT.A.....G...................................... MG570454.1_Pimephales_promelas_i ..C........T........T...........TT.A...........T................................ MG570455.1_Notropis_atherinoides ..C..C..G..T.....G..............TA.............T........................T....... MG570456.1_Notropis_atherinoides ..C..C..G..T.....G..............TA.............T........................T....... MG570457.1_Pimephales_notatus_is ..C..C.....T..G..G..T...........T..A...........T............................C... MG570458.1_Pimephales_notatus_is ..C..C.....T..G..G..T...........T..A...........T............................C... MK421554.1_Parabramis_pekinensis ..............G................................................................. MT333789.1_Notropis_lutipinnis_v ..C..C..G..T........T........T.....A..G........T................................ MT364325.1_Hybognathus_amarus_mi ..C..C.....T........T........T.................T................G............... MT501368.1_Gila_cypha_isolate_SN ..C..C.....T...T...............................T................................ MT501369.1_Notropis_simus_pecose ..C..C.....T..TT.G..T.................G........T............................C... MT501378.1_Hybognathus_amarus_is ..C..C.....T........T........T.................T................G............... MT501385.1_Notropis_jemezanus_vo ..C..C..G..T...T.G...............A.............T........................T....... MT501391.1_Rhinichthys_osculus_i ..C..C.....T..TT....T........T..T..T..G..G.....T................G............... MT667239.1_Rhinichthys_osculus_t ..C..C.....T..TT....T........T..T..T..G..G.....T................G............... MT667242.1_Luxilus_cornutus_vouc ..C..C..G..T.....G..............TA....G........T................G............... MW300340.1_Hybognathus_placitus_ ..C..C..G..T.........T..........T..A...........T................G............... MW300341.1_Hybognathus_placitus_ ..C..C..G..T.........T..........T..A...........T................G............... NC_013763.1_Mylocheilus_caurinus .....C.....T...T..........T....................T................................ NC_033926.1_Opsopoeodus_emiliae_ ..C..C..G..T....................T..............T................................ NC_037008.1_Notropis_chalybaeus_ ..C..C..G..T.....G..T........T..T..A..G........T................................ NC_037009.1_Notropis_heterolepis ..C..C.....T.....G..T...........T.....G........T.........................C...... NC_037010.1_Rhinichthys_obtusus_ ..C..C.....T...T.............T........G..G.....T................................ NC_037014.1_Notropis_hudsonius_i ..C..C..C............T.......T...A.A............................G............... NC_037015.1_Exoglossum_maxilling ..C..C..C..T..G.................TT.A.....G...................................... NC_054086.1_Ptychocheilus_lucius ..C..C.....T...T...............................T................................ NC_054257.1_Gila_cypha_isolate_S ..C..C.....T...T...............................T................................ NC_054259.1_Gila_nigrescens_isol ..C..C.....T...T...............................T................................ NC_054260.1_Hybognathus_amarus_i ..C..C.....T...T....T........T.................T................G............... NC_054262.1_Notropis_jemezanus_v ..C..C..G..T...T.G...............A.............T........................T....... Pimephales_notatus_R2S3_________ ..C..C..G..T...T....T........T..T..A...........T............................C... Pimephales_tenellus_tenellu_R2S1 ...........T...T....T........T.....A.....G.....T................................ Pimephales_tenellus_parvice_R2S2 ...........T........T........T.....A.....G.....T............................C... Pimephales_notatus_R1S1_________ ..C..C..G..T...T....T........T..T..A...........T............................C... MG570452.1_Pimephales_promelas_i ..C........T........T...........TT.A...........T................................ MG570452.1_Pimephales_promelas_S ..C........T...T....T...........TT.A...........T................................ AB626850.1_Megalobrama_terminali GTTGATCCAAGCCCATGACCACTAACCGGAGCCGTCGGTGCTCTATTAATAACATCCGGCCTAGCAATCTGGTTCCACTT AP010779.1_Mylocheilus_caurinus_ ........T................................C...C............................T..... AP011215.1_Gila_sp._1460_mitocho .............................................C............................T..... AP011263.1_Scardinius_erythropht .............................................C............................T..... AP011267.1_Algansea_lacustris_mi ........T................................CT.GC....G...........G...........T..... AP011268.1_Yuriria_alta_mitochon ........C................................CT..C.T..G....................A..T..... AP011273.1_Hybognathus_nuchalis_ ........T................................CT..C....G...........G...........T..... AP011274.1_Couesius_plumbeus_mit .............................................C...C........................T..... AP011275.1_Platygobio_gracilis_m ........T................................CT.GC....G.......................T..... AP011277.1_Erimystax_dissimilis_ ........T.....C..........................C...C............................T..... AP011279.1_Pimephales_promelas_m ........C................................C...C............................T..... AP011280.1_Clinostomus_elongatus ........T................................C...C............................T..... AP012079.1_Luxilus_chrysocephalu ........T................................CT..C....G............................. AP012080.1_Macrhybopsis_gelida_m ........C........................A.T.....CT..C....G.................T.....T..... AP012083.1_Notropis_atherinoides ........T................................C...C.......C....................T..... AP012084.1_Notropis_baileyi_mito ........C........................A.......CT..C..........T........T........T..... AP012087.1_Cyprinella_galactura_ ........T................................C...C....G.....T...T.............T..... AP012088.1_Hybopsis_lineapunctat ........T............T...........A.......CT..C....G...........G................. AP012090.1_Luxilus_cornutus_mito ........T................................CT..C....G............................. AP012091.1_Lythrurus_ardens_mito ........T................................CT..C....G............................. AP012092.1_Lythrurus_fumeus_mito ........T................................CT.................T.G................. AP012093.1_Lythrurus_lirus_mitoc ........T................................CT..C....G............................. AP012094.1_Lythrurus_umbratilis_ ........T................................CT..C....G............................. AP012095.1_Macrhybopsis_meeki_mi ........T........................A.T.....CT..C....G...........G.....T..A..T..T.. AP012097.1_Notropis_bifrenatus_m ........T..........................T.....CT..C....G...........G................. AP012098.1_Pimephales_sp._MCZunc ........T................................C................................T..... AP012100.1_Notropis_telescopus_m ........T................................CT..C....G............................. AP012101.1_Pimephales_notatus_mi ........T................................C...C............................T..... AP012102.1_Pimephales_vigilax_mi ........T........................A.......C..............T....................... AP012103.1_Pogonichthys_macrolep ........T................................C...C............................T..... AP012106.1_Richardsonius_balteat ........T................................C................................T..... AP012108.1_Notropis_chrosomus_mi ........T...........C....................CT..C.......G......T.G................. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ........T........................A.......C..............T....................... Pimephales_vigilax_R1S3_________ ........T........................A.......C..............T....................... DQ536429.1_Notropis_stramineus_m ........T.................................T..C.......G.......................... JX910141.1_Squaliobarbus_curricu ................................................................................ KC351187.1_Squaliobarbus_curricu ................................................................................ KT278765.1_Pimephales_promelas_m ........C................................C...C............................T..... KT289925.1_Pimephales_promelas_m ........C................................C...C................G...........T..... KT424924.1_Rhinichthys_osculus_m .............................................C............................T..... KU200257.1_Chanodichthys_ilishae ................................................................................ MF972070.1_Siphateles_bicolor_mo .............................................C............................T..... MG570407.1_Notropis_chalybaeus_v ........T................................C...C.................................. MG570408.1_Notropis_bifrenatus_v ........T..........................T.....CT..C....G...........G................. MG570413.1_Notropis_heterolepis_ ........T................................C...C....G.......................T..... MG570416.1_Rhinichthys_obtusus_v ........T................................C...C....G....................A..T..... MG570417.1_Rhinichthys_obtusus_v ........T................................C...C....G....................A..T..... MG570420.1_Pimephales_notatus_vo ........T................................C................................T..... MG570443.1_Notropis_hudsonius_is ........T................................C...C..............T.............T..... MG570444.1_Rhinichthys_atratulus ........T................................C...C....G....................A..T..... MG570445.1_Rhinichthys_atratulus ........T................................C...C....G....................A..T..... MG570447.1_Luxilus_cornutus_isol ........T................................CT..C....G............................. MG570449.1_Luxilus_cornutus_isol ........T................................CT..C....G............................. MG570450.1_Pimephales_notatus_is ........T................................C................................T..... MG570451.1_Notropis_bifrenatus_i ........T..........................T.....CT..C....G...........G................. MG570453.1_Exoglossum_maxillingu ........T.....C..........................C...C............................T..... MG570454.1_Pimephales_promelas_i ........C................................C...C............................T..... MG570455.1_Notropis_atherinoides ........T................................C...C.......C....................T..... MG570456.1_Notropis_atherinoides ........T................................C...C.......C....................T..... MG570457.1_Pimephales_notatus_is ........T................................C................................T..... MG570458.1_Pimephales_notatus_is ........T................................C................................T..... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ........T................................CT..C....G.....T.................T..... MT364325.1_Hybognathus_amarus_mi ........T................................CT..C....G...........G...........T..... MT501368.1_Gila_cypha_isolate_SN .............................................C............................T..... MT501369.1_Notropis_simus_pecose ........T...........G....................CT..C....G.......................T..... MT501378.1_Hybognathus_amarus_is ........T................................CT..C....G...........G...........T..... MT501385.1_Notropis_jemezanus_vo ........T..........................A.....C...C.......C....................T..... MT501391.1_Rhinichthys_osculus_i ........T................................C...C.......G....................T..... MT667239.1_Rhinichthys_osculus_t ........T................................C...C.......G....................T..... MT667242.1_Luxilus_cornutus_vouc ........T................................CT..C....G............................. MW300340.1_Hybognathus_placitus_ ........T................................CT..C....G...........G................. MW300341.1_Hybognathus_placitus_ ........T................................CT..C....G...........G................. NC_013763.1_Mylocheilus_caurinus ........T................................C...C............................T..... NC_033926.1_Opsopoeodus_emiliae_ ........T.....C..........................C..............T.................T..... NC_037008.1_Notropis_chalybaeus_ ........T................................C...C.................................. NC_037009.1_Notropis_heterolepis ........T................................C...C....G.......................T..... NC_037010.1_Rhinichthys_obtusus_ ........T................................C...C....G....................A..T..... NC_037014.1_Notropis_hudsonius_i ........T................................C...C..............T.............T..... NC_037015.1_Exoglossum_maxilling ........T.....C..........................C...C............................T..... NC_054086.1_Ptychocheilus_lucius .............................................C.................................. NC_054257.1_Gila_cypha_isolate_S .............................................C............................T..... NC_054259.1_Gila_nigrescens_isol .............................................C............................T..... NC_054260.1_Hybognathus_amarus_i ........T................................CT..C....G...........G...........T..... NC_054262.1_Notropis_jemezanus_v ........T..........................A.....C...C.......C....................T..... Pimephales_notatus_R2S3_________ ........T................................C...C.......G....................T..... Pimephales_tenellus_tenellu_R2S1 ........T................................C...C..............T..........A..T..... Pimephales_tenellus_parvice_R2S2 ........T................................C...C..............T.............T..... Pimephales_notatus_R1S1_________ ........T................................C...C.......G....................T..... MG570452.1_Pimephales_promelas_i ........C................................C...C............................T..... MG570452.1_Pimephales_promelas_S ........C................................C...C............................T..... AB626850.1_Megalobrama_terminali CCACTCAACAACACTAATAACCCTCGGAATAATTCTTCTACTCCTTACAATATTCCAATGATGACGTGACATTATTCGAG AP010779.1_Mylocheilus_caurinus_ .......GT...................C.G.....CT....T..........................TG.A....... AP011215.1_Gila_sp._1460_mitocho .......GTG..............T..CC.T........G..T...........T..G...........TG.C....... AP011263.1_Scardinius_erythropht ........T............T..T...C..G..........T..C..............G................... AP011267.1_Algansea_lacustris_mi .......G................T...T..G....AT................T..G...................... AP011268.1_Yuriria_alta_mitochon .......GT...C..............GT........T.G..A........G..T..G...........TG.C....... AP011273.1_Hybognathus_nuchalis_ .......GT....T..........T...T..G....GT....T...........T..............TG....C.... AP011274.1_Couesius_plumbeus_mit T.......T...C...............T.......CAC...T...........T..G...........T..C....... AP011275.1_Platygobio_gracilis_m .......GT...................T.GG....AT....T...........................G.C..C..G. AP011277.1_Erimystax_dissimilis_ .......GT......G............C.......G.....T...........T..G...........TG......... AP011279.1_Pimephales_promelas_m .......GT...............T..TT..G....A..G...........G..T..G...........TG.C..C.... AP011280.1_Clinostomus_elongatus .......GT......G............C.......CGC...T..A.......................TG.A.....T. AP012079.1_Luxilus_chrysocephalu ...T..GGT...............T...T.......GT.G..T...........T..............TG....C.... AP012080.1_Macrhybopsis_gelida_m T..T...GT...............T..GT.............T...........T..............TG....C.... AP012083.1_Notropis_atherinoides ......GGT...................T..G....GT.G..............T..............TG......... AP012084.1_Notropis_baileyi_mito .......GT....T..........T...T.......GT.G..T...........T..G.....G.....T.....C.... AP012087.1_Cyprinella_galactura_ ......C.TG..............T...T.....T.AT.G..T..........................TG.C..C.... AP012088.1_Hybopsis_lineapunctat .......GT..........G....T..GT....C..GT.G..T...........T........G...........C.... AP012090.1_Luxilus_cornutus_mito ......GGT...............T...C.......GT....T...........T..G...........TG....C.... AP012091.1_Lythrurus_ardens_mito .......GT............T..T...T.......AT.G..T...........T..............TG......... AP012092.1_Lythrurus_fumeus_mito .......GTG..............T...T.......GT.G..T........G..T..............TG......... AP012093.1_Lythrurus_lirus_mitoc T..T...GT.G.......G..T..T...T.......GT.G..T...........T..............TG......... AP012094.1_Lythrurus_umbratilis_ .......GT............T..T...T.......AT.G..T...........T..............TG......... AP012095.1_Macrhybopsis_meeki_mi T..T...GT...G...........T..GT.......A.....T..C.....G..T..............TG.C..C.... AP012097.1_Notropis_bifrenatus_m T......GTT..............T..GT.......GT.G..T...........T..............TG....C.... AP012098.1_Pimephales_sp._MCZunc .......GTG..............T..GT.G.....GT....T........G..T..............TG....C.... AP012100.1_Notropis_telescopus_m .......GT......T........T...C..G....GT....T........G..T..G...........TG....C.... AP012101.1_Pimephales_notatus_mi .......GTG..............T..GT.......GT....T........G..T..............TG....C.... AP012102.1_Pimephales_vigilax_mi T......CTC...T..............T.......AT.......C........T..G.....G......G.A....... AP012103.1_Pogonichthys_macrolep ........T...........T.......C.......C.....T..........................TG......... AP012106.1_Richardsonius_balteat .......GT...................C..G....AT....T.......................C..TG....C.... AP012108.1_Notropis_chrosomus_mi .......GT......G..G.....T..GT.......GT.G...........G..T..G...........TG.......G. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T......CTC...T..............T.......AT.......C........T..G.....G......G.A....... Pimephales_vigilax_R1S3_________ T......CTC...T..............T.......AT.......C........T..G.....G......G.A....... DQ536429.1_Notropis_stramineus_m .......GT....T..........T...T.GG....GT....T........G..T..G.....G......G.C..C.... JX910141.1_Squaliobarbus_curricu .............T.......T..T.................T..........A..................C..C.... KC351187.1_Squaliobarbus_curricu .............T.......T..T.................T..........A..................C..C.... KT278765.1_Pimephales_promelas_m .......GT..................TT.......A..G..............T..G...........T..C..C.... KT289925.1_Pimephales_promelas_m ........T...............T..TT.......A..G...........G..T..G...........TG.C..C.... KT424924.1_Rhinichthys_osculus_m .......GT......G............T........T....T...........T........G.....TG......... KU200257.1_Chanodichthys_ilishae .............T..........T..GG........T....T..................................... MF972070.1_Siphateles_bicolor_mo ...T....T...............T..TC.T........G..T...........T...........C..T.....C.... MG570407.1_Notropis_chalybaeus_v .......GT...............T..GT.......G.....T........G..T..............T.....C.... MG570408.1_Notropis_bifrenatus_v T......GTT..............T..GT.......GT.G..T...........T..............TG....C.... MG570413.1_Notropis_heterolepis_ .......GT....T..........T...T.......GT....T........G..T..G...........TG.C....... MG570416.1_Rhinichthys_obtusus_v .......GT...............T...T.......AT....T.....G.....T..G...........TG.A.....G. MG570417.1_Rhinichthys_obtusus_v .......GT...............T...T.......AT....T.....G.....T..G...........TG.A.....G. MG570420.1_Pimephales_notatus_vo .......GTG..............T..GT.G.....GT....T........G..T..............TG....C.... MG570443.1_Notropis_hudsonius_is .......GT....T..........T...C.......GT....T...........T........G.....T........G. MG570444.1_Rhinichthys_atratulus .......GT...............T...T.G.....AT....T.....G.....T..G.....G.....TG.......G. MG570445.1_Rhinichthys_atratulus .......GT...............T...T.G.....AT....T.....G.....T..G.....G.....TG.......G. MG570447.1_Luxilus_cornutus_isol ......GGT...............T...C.......GT....T...........T..G...........TG....C.... MG570449.1_Luxilus_cornutus_isol ......GGT...............T...C.......GT....T...........T..G...........TG....C.... MG570450.1_Pimephales_notatus_is .......GTG..............T..GT.G.....GT....T........G..T..............TG....C.... MG570451.1_Notropis_bifrenatus_i T......GTT..............T..GT.......GT.G..T...........T..............TG....C.... MG570453.1_Exoglossum_maxillingu .......GT......G............C.......G.....T...........T..G...........TG......... MG570454.1_Pimephales_promelas_i ........T...............T..TT.......A..G...........G..T..G...........TG.C..C.... MG570455.1_Notropis_atherinoides ......GGT...................T..G....GT.G..............T..............TG......... MG570456.1_Notropis_atherinoides ......GGT...................T..G....GT.G..............T..............TG......... MG570457.1_Pimephales_notatus_is .......GTG..............T..GT.G.....CT....T...........T..............TG....C.... MG570458.1_Pimephales_notatus_is .......GTG..............T..GT.G.....GT....T........G..T..............TG....C.... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ........T......G........T..GT.......G.................T.................C..C.... MT364325.1_Hybognathus_amarus_mi ...T...GT....T..........T..GT..G....GT....T........G..T..............TG....C.... MT501368.1_Gila_cypha_isolate_SN .......GT...............T..CC.T........G..T...........T..............TG......... MT501369.1_Notropis_simus_pecose .......GT...............T...T.GG....GT.G..T........G.....G...........TG....C.... MT501378.1_Hybognathus_amarus_is ...T...GT....T..........T..GT..G....GT....T........G..T..............TG....C.... MT501385.1_Notropis_jemezanus_vo .......GT......G............T..G....GT....T........G..T........G.....TG....C.... MT501391.1_Rhinichthys_osculus_i ......GGT...............T...C.......CT....T.....G.....T..G...........TG......... MT667239.1_Rhinichthys_osculus_t ......GGT...............T...T.......CT....T.....G.....T..G...........TG......... MT667242.1_Luxilus_cornutus_vouc ......GGT...............T...C.......GT....T...........T..G...........TG....C.... MW300340.1_Hybognathus_placitus_ .......GT...G..G........T..GT.......GT.G..T........G..T..G...........TG.C....... MW300341.1_Hybognathus_placitus_ .......GT...G..G........T..GT.......GT.G..T........G..T..G...........TG.C....... NC_013763.1_Mylocheilus_caurinus .......GT...................C.G.....CT....T..........................TG.A....... NC_033926.1_Opsopoeodus_emiliae_ ........T...T...........T..GT.......G.................T..G.....G.....T.....C..C. NC_037008.1_Notropis_chalybaeus_ .......GT...............T..GT.......G.....T........G..T..............T.....C.... NC_037009.1_Notropis_heterolepis .......GT....T..........T...T.......GT....T........G..T..G...........TG.C....... NC_037010.1_Rhinichthys_obtusus_ .......GT...............T...T.......AT....T.....G.....T..G...........TG.A.....G. NC_037014.1_Notropis_hudsonius_i .......GT....T..........T...C.......GT....T...........T........G.....T........G. NC_037015.1_Exoglossum_maxilling .......GT......G............C.......G.....T...........T..G...........TG......... NC_054086.1_Ptychocheilus_lucius .......GT...............T..CC.T........G..T...........T..G...........TG......... NC_054257.1_Gila_cypha_isolate_S .......GT...............T..CC.T........G..T...........T..............TG......... NC_054259.1_Gila_nigrescens_isol .......GT...G...........T..CC.T........G..T.....G.....T..G...........TG....C.... NC_054260.1_Hybognathus_amarus_i ...T...GT....T..........T..GT..G....GT....T........G..T..............TG....C.... NC_054262.1_Notropis_jemezanus_v .......GT......G............T..G....GT....T........G..T........G.....TG....C.... Pimephales_notatus_R2S3_________ .......GT...............T..GT.......G.....T...........T..............TG....C.... Pimephales_tenellus_tenellu_R2S1 ......GGT...............T..GT.......AT.G..............T..............T.....C.... Pimephales_tenellus_parvice_R2S2 ......GGT..........G....T..GT.......AT.G..............T..............T.....C.... Pimephales_notatus_R1S1_________ .......GT...............T..GT.......G.....T...........T..............TG....C.... MG570452.1_Pimephales_promelas_i ........T...............T..TT.......A..G...........G..T..G...........TG.C..C.... MG570452.1_Pimephales_promelas_S .......GT...............T..TT..G....A..G...........G..T..G...........TG.C..C.... AB626850.1_Megalobrama_terminali AAGGAACATTCCAAGGTCACCACACACCACCCGTACAAAAAGGACTACGTTATGGAATAATCCTATTCATTACCTCAGAG AP010779.1_Mylocheilus_caurinus_ ....G..C..T........T..T..G.....A...........C.....A.................T..C.....T..A AP011215.1_Gila_sp._1460_mitocho .G..G..C..T.....C..T.....C.....A.................C..C..............T........T..A AP011263.1_Scardinius_erythropht .G.....C........A..............A............T....C.....T.....T..G..T..C..T..T..A AP011267.1_Algansea_lacustris_mi .G.....C.......................A..G..............A........G...T..........T..C... AP011268.1_Yuriria_alta_mitochon .G..G..C.......................A..G..............A...........T.....T.....T..T... AP011273.1_Hybognathus_nuchalis_ .......C........C..T........C..A...........GT......................T.....T..T..A AP011274.1_Couesius_plumbeus_mit ....G..C..T.....C........G.....A..G...........C..C..C...........G..T..C..T..C... AP011275.1_Platygobio_gracilis_m .......C..T..............C.....A.................G...........T.....T.....T..C..A AP011277.1_Erimystax_dissimilis_ .......C..T.....C...........G..A..G.........T.G..A..C..............T........C..A AP011279.1_Pimephales_promelas_m .G..G..C..............T.....G..A...........GT....G..C....................T..T... AP011280.1_Clinostomus_elongatus .G.....C..T.................C..A..............G..A..C..G...........T.....T..C..A AP012079.1_Luxilus_chrysocephalu .......C....................C..A.....G..G........A..............G..T.....T..C..A AP012080.1_Macrhybopsis_gelida_m .G.....C..T.................T..A.................A.......................T..T..A AP012083.1_Notropis_atherinoides .......C....................G..A.....G........G..G........G...T....T.....T..T..A AP012084.1_Notropis_baileyi_mito .......C..T.....C...........G..A...A....G..GT....A..............G..T.....T..C..A AP012087.1_Cyprinella_galactura_ ....T..T........C........G..C..A...........C..G..A..C..G..G..T..C..T........C..A AP012088.1_Hybopsis_lineapunctat .......C....................C..A........G..GT....A.....T...........T.....T..T... AP012090.1_Luxilus_cornutus_mito .......C....................C........G..G..T..G..A.....T..G........T.....T..C..A AP012091.1_Lythrurus_ardens_mito .G..G..C..T.................C..A........G..GT....G..C........T.....T.....T..C..A AP012092.1_Lythrurus_fumeus_mito ....G..C........C...........C..A..G...........G..A........G..T.....T.....T..C..A AP012093.1_Lythrurus_lirus_mitoc .G..G..C....................C..A........G..GT....G..C........T.....T.....T..C..A AP012094.1_Lythrurus_umbratilis_ .G..G..C..T.................C..A...........GT....G..C........T.....T.....T..C..A AP012095.1_Macrhybopsis_meeki_mi .G.....C..T.................T..T...........GT....A..C..T......T..........T..T..A AP012097.1_Notropis_bifrenatus_m ....G..C.......................G.....G...........A.......................T..C..A AP012098.1_Pimephales_sp._MCZunc .G.....C.......................A.....G...........A.................T.....T..T..A AP012100.1_Notropis_telescopus_m .G..G..C........C........C.....A..G.....G..GT....A..C.....G..T.....T..C..T..T... AP012101.1_Pimephales_notatus_mi .......C........C...........G..A.....G...........A...........T.....T.....T..T..A AP012102.1_Pimephales_vigilax_mi ....G..C..............T..C..G..A.................A...........T.....T.....T..T..A AP012103.1_Pogonichthys_macrolep ....G..C..T...........T.....C..A...........C.....A.................T.....T..T... AP012106.1_Richardsonius_balteat .......C..T.................T..A..G..............G.................T.....T..T..A AP012108.1_Notropis_chrosomus_mi ....G..C.......................A............T....A.....C...........T.....T..C..A AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....G..C..............T..C..G..A.................A...........T.....T.....T..T..A Pimephales_vigilax_R1S3_________ ....G..C..............T..C..G..A.................A...........T.....T.....T..T..A DQ536429.1_Notropis_stramineus_m ....G..C.....G..G..T...........A........G..GT....G.................T..C.....T..A JX910141.1_Squaliobarbus_curricu .......C....................G..A....................C..............T.....T...... KC351187.1_Squaliobarbus_curricu .......C....................G..A....................C...........G..T.....T...... KT278765.1_Pimephales_promelas_m .G..G..C...........T..T........A.....G.....GT.G..G..C..............T.....T..T..A KT289925.1_Pimephales_promelas_m .G..G..C..............T.....G..A...........GT....G..C....................T..T... KT424924.1_Rhinichthys_osculus_m .G..G..C..T.....C..T........G..G..G..G..G...T....A.....G.....T..C..T.....T..C..A KU200257.1_Chanodichthys_ilishae ................C..............A.............................T..G..T............ MF972070.1_Siphateles_bicolor_mo ....G..C..T.....C..T..T..C.....A........G..G.................TT....T..C..T..T..A MG570407.1_Notropis_chalybaeus_v .......C...........T...........G.................A............T....T.....T..C..A MG570408.1_Notropis_bifrenatus_v ....G..C.......................G.....G...........A.......................T..C..A MG570413.1_Notropis_heterolepis_ .......C...........T........C..A.....G..G........A.................T........C..A MG570416.1_Rhinichthys_obtusus_v ....G..C..T.................G..A..C...........G..A.................T........C..A MG570417.1_Rhinichthys_obtusus_v ....G..C..T.................G..A..C...........G..A.................T........C..A MG570420.1_Pimephales_notatus_vo .G.....C.......................A.....G...........A.................T.....T..T..A MG570443.1_Notropis_hudsonius_is .......C.......................G........G...T....A..C..G...........T.....T..C..A MG570444.1_Rhinichthys_atratulus ....G..C..T.................G..A..C..............A.................T........C..A MG570445.1_Rhinichthys_atratulus ....G..C..T.................G..A..C..............A.................T........C..A MG570447.1_Luxilus_cornutus_isol .......C....................C........G..G..C..G..A.................T.....T..C..A MG570449.1_Luxilus_cornutus_isol .......C....................C........G..G..C..G..A.................T.....T..C..A MG570450.1_Pimephales_notatus_is .G.....C.......................A.....G...........A.................T.....T..T..A MG570451.1_Notropis_bifrenatus_i ....G..C.......................G.....G...........A.......................T..C..A MG570453.1_Exoglossum_maxillingu .......C..T.....C...........G..A..G.........T....A..C..............T........C..A MG570454.1_Pimephales_promelas_i .G..G..C..............T.....G..A...........GT....G..C....................T..T... MG570455.1_Notropis_atherinoides .......C........C..............A.....G...........G........G...T.G..T.....T..T..A MG570456.1_Notropis_atherinoides .......C....................G..A.....G........G..G........G...T....T.....T..T..A MG570457.1_Pimephales_notatus_is .G.....C.......................A.....G...........A.................T.....T..T..A MG570458.1_Pimephales_notatus_is .G.....C.......................A.....G...........A.................T.....T..T..A MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .G.....C........C.....T........A.....G..G..GT....A..C..G...........T..C..T..C..A MT364325.1_Hybognathus_amarus_mi .......C..T........T..T.....C..A...........GT...................G..T.....T..T... MT501368.1_Gila_cypha_isolate_SN .G..G..C..T.....C..T.....C.....A.................C..C........T.....T........T..A MT501369.1_Notropis_simus_pecose ....G..C...........T........T..A.....G...........A........G........T.....T..C..A MT501378.1_Hybognathus_amarus_is .......C..T........T..T.....C..A...........GT...................G..T.....T..T... MT501385.1_Notropis_jemezanus_vo .......C.................G.....A.....G........G..G.....G......T.G..T.....T..C... MT501391.1_Rhinichthys_osculus_i .G.....C..T.................G..A.....G..G...T....C........G..T..C..T.....T..C..A MT667239.1_Rhinichthys_osculus_t .G.....C..T.................G..A.....G..G...T....C........G..T..C..T.....T..C... MT667242.1_Luxilus_cornutus_vouc .......C....................C........G..G..C..G..A.................T.....T..C..A MW300340.1_Hybognathus_placitus_ .G..G..C....................C..A..G.........T.......C..G..G..T.....T.....T..T..A MW300341.1_Hybognathus_placitus_ .G..G..C....................C..A..G.........T.......C..G..G..T.....T.....T..T..A NC_013763.1_Mylocheilus_caurinus ....G..C..T........T..T..G.....A...........C.....A.................T..C.....T..A NC_033926.1_Opsopoeodus_emiliae_ .G..G..C..T.....C.....T........A...........C.....A..C........T.....T..C..T..C..A NC_037008.1_Notropis_chalybaeus_ .......C...........T...........G.................A............T....T.....T..C..A NC_037009.1_Notropis_heterolepis .......C...........T........C..A.....G..G........A.................T........C..A NC_037010.1_Rhinichthys_obtusus_ ....G..C..T.................G..A..C...........G..A.................T........C..A NC_037014.1_Notropis_hudsonius_i .......C.......................G........G...T....A..C..G...........T.....T..C..A NC_037015.1_Exoglossum_maxilling .......C..T.....C...........G..A..G.........T....A..C..............T........C..A NC_054086.1_Ptychocheilus_lucius ....T..C..T.....C..T.....C..G..A...........G.....C..C..............T.....T..T..A NC_054257.1_Gila_cypha_isolate_S .G..G..C..T.....C..T.....C.....A.................C..C........T.....T........T..A NC_054259.1_Gila_nigrescens_isol ....T..C..T.....C..T.....C..G..A...........G.....C..C..............T........T..A NC_054260.1_Hybognathus_amarus_i .......C..T........T..T.....C..A...........GT...................G..T.....T..T... NC_054262.1_Notropis_jemezanus_v .......C.................G.....A.....G........G..G.....G......T.G..T.....T..C... Pimephales_notatus_R2S3_________ ....G..T........C...........G..A.....G...........A.....G........G..T.....T..T... Pimephales_tenellus_tenellu_R2S1 ....T.....T........T..T.....T..A........G..GT....A.....G.................T..T... Pimephales_tenellus_parvice_R2S2 ....T.....T........T..T.....C..A........G..GT....A..C..G.................T..T... Pimephales_notatus_R1S1_________ ....G..T........C...........G..A.....G...........A.....G........G..T.....T..T... MG570452.1_Pimephales_promelas_i .G..G..C..............T.....G..A...........GT....G..C........T...........T..T... MG570452.1_Pimephales_promelas_S .G..G..C..............T.....G..A...........GT....G..C..............T.....T..T... AB626850.1_Megalobrama_terminali GTATTCTTTTTCCTAGGATTCTTCTGAGCTTTCTACCACTCAAGTCTAGCACCGACGCCAGAACTAGGGGGATGCTGACC AP010779.1_Mylocheilus_caurinus_ ..............G..C.....T.....C..T..T........C..G..C..A..A..T........T..G..T..... AP011215.1_Gila_sp._1460_mitocho .....T..C..T..G..T.....T.....C..T............T.......A..A..T..G...........T..... AP011263.1_Scardinius_erythropht ..G.....C........C...........C..T.....T.....C........A..A........G..A.....T..G.. AP011267.1_Algansea_lacustris_mi ..G.....C...T....C...........C..............C..G..C..A..A..T........T..C........ AP011268.1_Yuriria_alta_mitochon ........C........C..T........C..............C..G..C..A..A..T........C.....T..... AP011273.1_Hybognathus_nuchalis_ ........C........C.....T...........T........C.....C..A..A..C..G.....C........... AP011274.1_Couesius_plumbeus_mit ........C........C.....T.....C..T..T..T.....C..G.....C..A..T........A.....T..... AP011275.1_Platygobio_gracilis_m .................C...........C..............C..G..C..A.....T........C.....T..... AP011277.1_Erimystax_dissimilis_ .................C.....T.....C...........G..C.....C..A..A..T...........C........ AP011279.1_Pimephales_promelas_m ..............G..C...........C..T..T..............C..A..A..T...T....A..G........ AP011280.1_Clinostomus_elongatus ..G........T.....C.....T.....C..T..T........C.....C..A..A..T..G..G..C.....T..G.. AP012079.1_Luxilus_chrysocephalu ..G.....C.....G..C...........C..............C..G..C..A..A..T........C........G.. AP012080.1_Macrhybopsis_gelida_m ..G..............C...........C..............C.....C..A..A..T..GT....T.....T..... AP012083.1_Notropis_atherinoides ..G..............C.....T.....C.....T........C.....C..A..A..T..G..G..C........... AP012084.1_Notropis_baileyi_mito ..G.....C.....G..C.....T.....C..............C..G..C..C..A..C..G.....C........... AP012087.1_Cyprinella_galactura_ ..G...........G..C.....T.....C..............C..G..C..A..A..T..G..G..A..G........ AP012088.1_Hybopsis_lineapunctat ..G.....C........C.....T.....C..............C..G..C..A..A..T..G.....C........... AP012090.1_Luxilus_cornutus_mito ..G.....C........C.....T.....C..............C..G..C..A..A..T.....G..C........... AP012091.1_Lythrurus_ardens_mito ..G.....C........C.....T..G..C..............C..G..C..A.....T........C.....T..... AP012092.1_Lythrurus_fumeus_mito ..G.....C..T.....C.....T..G..C...........C........C..T..A..T........T..G........ AP012093.1_Lythrurus_lirus_mitoc ..G.....C........C.....T..G..C...........G..C..G..C..A.....T..G.....C.....T..... AP012094.1_Lythrurus_umbratilis_ ..G.....C........C.....T..G..C..............C..G..C..A.....T........C.....T..... AP012095.1_Macrhybopsis_meeki_mi .................C...........C..............C.....C..A..A..T..G.....C........... AP012097.1_Notropis_bifrenatus_m ..G.....C.....G..C...........C........T.....CT....C..A..A..T........C........... AP012098.1_Pimephales_sp._MCZunc .................T...........C..T...........C.....C..A..A..T..G................. AP012100.1_Notropis_telescopus_m ........C........C...........C..............C..G..C..A..C..T........C........... AP012101.1_Pimephales_notatus_mi .................T...........C..T...........C.....C..A..A..T........A........... AP012102.1_Pimephales_vigilax_mi ..G..............T...........C..T........C..C..G..C..T..A..T...T....T........... AP012103.1_Pogonichthys_macrolep ..............G..C.....T.....C..T..T........C.....C..T..A..T........C........... AP012106.1_Richardsonius_balteat ..G..............C...........C..T.................C..A..A..G..G..G..C........... AP012108.1_Notropis_chrosomus_mi ..G.....C...T....C.....T.....C.........G....C.....C..A..A..T..G.....T........... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..G..............T...........C..T........C..C..G..C..T..A..T...T....T........... Pimephales_vigilax_R1S3_________ ..G..............T...........C..T........C..C..G..C..T..A..T...T....T........... DQ536429.1_Notropis_stramineus_m ..G.....C........C.....T.....C..............C.....C..A..C..T.....T..C........G.. JX910141.1_Squaliobarbus_curricu ........C...........T.................T.....C..G.....A..A.....G..C..A........... KC351187.1_Squaliobarbus_curricu ........C...........T.................T.....C..G.....A..A.....G..C..A........... KT278765.1_Pimephales_promelas_m ..............G..T..T........C..T..T..............C..A..A..T...T....A..G........ KT289925.1_Pimephales_promelas_m .................C...........C..T..T..............C..A..A..T...T....A..G........ KT424924.1_Rhinichthys_osculus_m ..G..............C...........C.....T........C.....T..A..A..C...T....C.....T..... KU200257.1_Chanodichthys_ilishae ..G.....C..........................T........CT.......A..A........G..A........... MF972070.1_Siphateles_bicolor_mo ........C..T..G..C.....T........T..T.........T.......A..A..T........A.....T..... MG570407.1_Notropis_chalybaeus_v ..G.........T....C...........C.....T........C.....T..A..A..T........C........... MG570408.1_Notropis_bifrenatus_v ..G.....C.....G..C...........C........T.....CT....C..A..A..T........C........... MG570413.1_Notropis_heterolepis_ ........C........T.....T..G..C.....T........C.....C..T..A..C.....G..C........... MG570416.1_Rhinichthys_obtusus_v ..............G..T.....T.....C..............C..G..C..A..A..T........C.....T..... MG570417.1_Rhinichthys_obtusus_v ..............G..T.....T.....C..............C..G..C..A..A..T........C.....T..... MG570420.1_Pimephales_notatus_vo .................T...........C..T...........C.....C..A..A..T..G................. MG570443.1_Notropis_hudsonius_is ........C.....G..C...........C.....T........C.....C..A.....T........C..G..T..... MG570444.1_Rhinichthys_atratulus ..............G..T.....T.....C..............C.....C..A..A..T........C.....T..... MG570445.1_Rhinichthys_atratulus ..............G..T.....T.....C..............C.....C..A..A..T........C.....T..... MG570447.1_Luxilus_cornutus_isol ..G.....C........C.....T.....C..............C..G..C..A..A..T.....G..C........... MG570449.1_Luxilus_cornutus_isol ..G.....C........C.....T.....C..............C..G..C..A..A..T.....G..C........... MG570450.1_Pimephales_notatus_is .................T...........C..T...........C.....C..A..A..T..G................. MG570451.1_Notropis_bifrenatus_i ..G.....C.....G..C...........C........T.....CT....C..A..A..T........C........... MG570453.1_Exoglossum_maxillingu .................C.....T.....C...........G..C.....C..A..A..T...........C........ MG570454.1_Pimephales_promelas_i .................C...........C..T..T..............C..A..A..T...T....A..G........ MG570455.1_Notropis_atherinoides ..G..............C.....T.....C.....T........C.....C..A..A..T..G..G..C........... MG570456.1_Notropis_atherinoides ..G..............C.....T.....C.....T........C.....C..A..A..T..G..G..C........... MG570457.1_Pimephales_notatus_is .................T...........C..T...........C.....C..A..A..T..G................. MG570458.1_Pimephales_notatus_is .................T...........C..T...........C.....C..A..A..T..G................. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..G.....C...T....C.....T.....C........T.....CT....C..A..A..T..G.....C..G........ MT364325.1_Hybognathus_amarus_mi ........C........C.....T...........T........C.....C..A..A..C........T........... MT501368.1_Gila_cypha_isolate_SN .....T..C..T..G..C.....T.....C..T............T.......A..A..T..............T..... MT501369.1_Notropis_simus_pecose ..G.....C........C........G..C..T..T..............C..A..A..C.....G..C........... MT501378.1_Hybognathus_amarus_is ........C........C.....T...........T........C.....C..A..A..C........T........... MT501385.1_Notropis_jemezanus_vo ..G........T.....C..T..T...........T........C.....C..A..A..T..G..G..C........... MT501391.1_Rhinichthys_osculus_i ..G..............C.....T..G..C..T......G....C.....T..A.....C........C.....T..... MT667239.1_Rhinichthys_osculus_t ..G..............C.....T..G..C..T......G....C.....T..A.....C........C.....T..... MT667242.1_Luxilus_cornutus_vouc ..G.....C........C.....T.....C..............C..G..C..A..A..T.....G..C........... MW300340.1_Hybognathus_placitus_ ........C.....T..T........G........T........C..G..C..A..A..T..G..G..C..G........ MW300341.1_Hybognathus_placitus_ ........C.....T..T........G........T........C..G..C..A..A..T..G..G..C..G........ NC_013763.1_Mylocheilus_caurinus ..............G..C.....T.....C..T..T........C..G..C..A..A..T........T..G..T..... NC_033926.1_Opsopoeodus_emiliae_ ............T....T..............T...........C..G..T..A..A..C...T....C..G........ NC_037008.1_Notropis_chalybaeus_ ..G.........T....C...........C.....T........C.....T..A..A..T........C........... NC_037009.1_Notropis_heterolepis ........C........T.....T..G..C.....T........C.....C..T..A..C.....G..C........... NC_037010.1_Rhinichthys_obtusus_ ..............G..T.....T.....C..............C..G..C..A..A..T........C.....T..... NC_037014.1_Notropis_hudsonius_i ........C.....G..C...........C.....T........C.....C..A.....T........C..G..T..... NC_037015.1_Exoglossum_maxilling .................C.....T.....C...........G..C.....C..A..A..T...........C........ NC_054086.1_Ptychocheilus_lucius .....T..C.....G..T.....T.....C..T............T.......A..A..T..G.....A.....T..... NC_054257.1_Gila_cypha_isolate_S .....T..C..T..G..C.....T.....C..T............T.......A..A..T..............T..... NC_054259.1_Gila_nigrescens_isol .....T..C.....G..T.....T.....C..T............T....C..A..A..T...........G..T..... NC_054260.1_Hybognathus_amarus_i ........C........C.....T...........T........C.....C..A..A..C........T........... NC_054262.1_Notropis_jemezanus_v ..G........T.....C..T..T...........T........C.....C..A..A..T..G..G..C........... Pimephales_notatus_R2S3_________ ..G..............T...........C..T...........C..G..C..A..A..T...T....C........... Pimephales_tenellus_tenellu_R2S1 ..G..T..C........T...........C..T...........C.....C..A..A..T..G.....C........... Pimephales_tenellus_parvice_R2S2 ..G..T..C........T...........C..T...........C.....C..A..A..T........C........... Pimephales_notatus_R1S1_________ ..G..............T...........C..T...........C..G..C..A..A..T...T....C........... MG570452.1_Pimephales_promelas_i .................C...........C..T..T..............C..A..A..T...T....A..G........ MG570452.1_Pimephales_promelas_S ..............G..C...........C..T..T..............C..A..A..T...T....A..G........ AB626850.1_Megalobrama_terminali CCCAACAGGAATCATTACATTAGACCCCTTCGAAGTTCCCCTCCTCAACACAGCTGTACTACTAGCATCCGGGGTAACAG AP010779.1_Mylocheilus_caurinus_ ...T.....CG...C...G...........T.....A.................C..............T..C....... AP011215.1_Gila_sp._1460_mitocho T..C......G.T.C..................G..C..A........T.....C..G...........T..C....... AP011263.1_Scardinius_erythropht ...T........T.CC...C.......A........G........T............T..........T..A..G.... AP011267.1_Algansea_lacustris_mi ...C........T.CC..............T.....A...........T............T.......T.......... AP011268.1_Yuriria_alta_mitochon ...T..G.....T.C.........T.....T..G..A...........T.....C...T..T....C.....A....... AP011273.1_Hybognathus_nuchalis_ ...T........T.C............A..T.....A..T.....T..T.....C...T..T..........A....... AP011274.1_Couesius_plumbeus_mit ...T......G.A.C...GC.......A..T.....G.....................T..T.............G.... AP011275.1_Platygobio_gracilis_m ...T..T..G..T.CC..............T..G..A........T........C...T..T..........A.....G. AP011277.1_Erimystax_dissimilis_ ...C......G.T.................T.....A.................C...T..T..........A..G.... AP011279.1_Pimephales_promelas_m ...T..C..G..T.C...............T.....G..A..T..T..T.....C...T.GT..........T....... AP011280.1_Clinostomus_elongatus T..T.....C....CC..............T.....A.....T..T..T..G.................T.......... AP012079.1_Luxilus_chrysocephalu ...T........T.CC...C..........T.....A..T.....T..T.....C..GT..T..........A..G..G. AP012080.1_Macrhybopsis_gelida_m ...T.....G....C...............T.....A........T..T.....C...T..T.......T..A....... AP012083.1_Notropis_atherinoides ...C..T.......C...G...........T..G..G........T..T.....C...T..T................G. AP012084.1_Notropis_baileyi_mito ...T..T..G..T.C....C..........T........T..T..A..T.....C...T..T.......T.......... AP012087.1_Cyprinella_galactura_ ...TG.T..G....C...............T.....A...........T..C......T.GT.................. AP012088.1_Hybopsis_lineapunctat T..T..........CC..............T.....A...........T.........T..T.............G.... AP012090.1_Luxilus_cornutus_mito ...T........T.CC...C..........T.....G..T.....T........C...T..T.............G.... AP012091.1_Lythrurus_ardens_mito ...T..C..G..T.CC..............T.....A.....A.....T..G..C...T.GT.......G.......... AP012092.1_Lythrurus_fumeus_mito ...T........T.C....C..........T.....A.....G..A........C...T..T....G..T.....G..G. AP012093.1_Lythrurus_lirus_mitoc ...T..T.....T.CC....................A.....A.....T..G......T.GT.......A.......... AP012094.1_Lythrurus_umbratilis_ ...T..C..G..T.CC..............T.....G.....A.....T..G..C...T.GT.......A.......... AP012095.1_Macrhybopsis_meeki_mi ...C....................T.....T.....A........T..T.....C...T..T.......T.......... AP012097.1_Notropis_bifrenatus_m ...T..........C...G.....T.....T.....A..T.....T............T..T.................. AP012098.1_Pimephales_sp._MCZunc ...T..G.....T.C.........T.....T.....A..T.....T..T.....C...T..T.......T..T..G..G. AP012100.1_Notropis_telescopus_m ...T..............C..............G..G.....T...........C...T..T.......T..A....... AP012101.1_Pimephales_notatus_mi ...C..C.....T...........T.....T.....A..T.....T..T.....C...T..T.......T..T.....G. AP012102.1_Pimephales_vigilax_mi ...T..T.....TTC.........T.....T.....A..A.....T........C...T..T....G..T..T....... AP012103.1_Pogonichthys_macrolep ...T..G..CG...C......G........T.....A.................C..............T..C....... AP012106.1_Richardsonius_balteat ...T.....TG...CC..G...........T.....G........T..T............T.......T..A....... AP012108.1_Notropis_chrosomus_mi ...T..G.....T.C...C...........T.....A..T.....T..T.....C...T.G................... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...T..T.....TTC.........T.....T.....A..A.....T........C...T..T....G..T..T....... Pimephales_vigilax_R1S3_________ ...T..T.....TTC.........T.....T.....A..A.....T........C...T..T....G..T..T....... DQ536429.1_Notropis_stramineus_m ...T.....G..T.C...G...........T.....G.................C...T..T.G.....T.....T.... JX910141.1_Squaliobarbus_curricu ............T......C..........T..G...........T...........G...........T.......... KC351187.1_Squaliobarbus_curricu ............T......C..........T..G...........T...........G...........T.......... KT278765.1_Pimephales_promelas_m ...T..C..G....C...............T..G..G..G..T..T..T.....C...T.GT..........T.....T. KT289925.1_Pimephales_promelas_m ...T..T.....T.C...............T..G..G..A..T..T..T.....C...T.GT..........T....... KT424924.1_Rhinichthys_osculus_m ...T..G...G.T..C........T..T..T.....G........T..T.....C...T..T.G................ KU200257.1_Chanodichthys_ilishae ..............C..................G....................C..T...........A.......... MF972070.1_Siphateles_bicolor_mo T..C......G.T.C............G...........A.....T..T.....C..G...........T..C....... MG570407.1_Notropis_chalybaeus_v T..C..........C....C..........T.....C..T.....T........C...T..T.......T.......... MG570408.1_Notropis_bifrenatus_v ...T..........C...G.....T.....T.....A..T.....T............T..T.................. MG570413.1_Notropis_heterolepis_ ...T........T.C....C.......T..T.....A..T.....T..T.....C..GT..T.................. MG570416.1_Rhinichthys_obtusus_v T..T......G.T.C....C..........T.....A..T........T.....C...T..T.......A.......... MG570417.1_Rhinichthys_obtusus_v T..T......G.T.C....C..........T.....A..T........T.....C...T..T.......A.......... MG570420.1_Pimephales_notatus_vo ...T..G.....T.C.........T.....T.....A..T.....T..T.....C...T..T.......T..T..G..G. MG570443.1_Notropis_hudsonius_is ...T..G.....T.CC....................A........T..T.....C...T..T.G.....T..A.....T. MG570444.1_Rhinichthys_atratulus T..T......G.T.C.G.............T.....A..G........T.....C...T..T.......A.......... MG570445.1_Rhinichthys_atratulus T..T......G.T.C...............T.....A..G........T.....C...T..T.......A.......... MG570447.1_Luxilus_cornutus_isol ...T........T.CC..GC..........T.....G..T.....T........C...T.GT.............G.... MG570449.1_Luxilus_cornutus_isol ...T........T.CC..GC..........T.....G..T.....T........C...T.GT.............G.... MG570450.1_Pimephales_notatus_is ...T..G.....T.C.........T.....T.....A..T.....T..T.....C...T..T.......T..T..G..G. MG570451.1_Notropis_bifrenatus_i ...T..........C...G.....T.....T.....A..T.....T............T..T.................. MG570453.1_Exoglossum_maxillingu ...C......G.T.................T.....A.................C...T..T..........A..G.... MG570454.1_Pimephales_promelas_i ...T..T.....T.C...............T..G..G..A..T..T..T.....C...T.GT..........T....... MG570455.1_Notropis_atherinoides ...C..T.......C...G...........T..G..G........T..T.....C...T..T.................. MG570456.1_Notropis_atherinoides ...C..T.......C...G...........T..G..G........T..T.....C...T..T................G. MG570457.1_Pimephales_notatus_is ...T..G.....T.C...............T.....A..T.....T..T.....C...T..T.......T..T..G..G. MG570458.1_Pimephales_notatus_is ...T..G.....T.C.........T.....T.....A..T.....T..T.....C...T..T.......T..T..G..G. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...C..........C...CC.G........T.....A..T........T..G......T..T.................. MT364325.1_Hybognathus_amarus_mi ...T........T.C............A..T.....A..T.....T..T.....C...T.GT..........A....... MT501368.1_Gila_cypha_isolate_SN T..C......G.T.C............A........C..A........T.....C..G...........T..C....... MT501369.1_Notropis_simus_pecose ...T..C.......C...............T..G..A..T........T..G..C..GT..T.......T.......... MT501378.1_Hybognathus_amarus_is ...T........T.C............A..T.....A..T.....T..T.....C...T.GT..........A....... MT501385.1_Notropis_jemezanus_vo ...CG.T..G....C...C...........T.....A........T..T..G..C......T.................. MT501391.1_Rhinichthys_osculus_i ...T......G.T.CC...........T..T.....G...........T.....C...T..T.................. MT667239.1_Rhinichthys_osculus_t ...T......G.T.CC...........T..T.....G...........T.....C...T..T.................. MT667242.1_Luxilus_cornutus_vouc ...T........T.CC..GC..........T.....G..T.....T........C...T.GT.............G.... MW300340.1_Hybognathus_placitus_ ...T........T.CC..............T.....A..T.....T..T..G..C...T..T.......T..A..G..G. MW300341.1_Hybognathus_placitus_ ...T........T.CC..............T.....A..T.....T..T..G..C...T..T.......T.....G..G. NC_013763.1_Mylocheilus_caurinus ...T.....CG...C...G...........T.....A.................C..............T..C....... NC_033926.1_Opsopoeodus_emiliae_ ...T..T.....T.C.GT..................A..T..T.....T.....C......T.......T..T....... NC_037008.1_Notropis_chalybaeus_ T..C..........C....C..........T.....C..T.....T........C...T..T.......T.......... NC_037009.1_Notropis_heterolepis ...T........T.C....C.......T..T.....A..T.....T..T.....C..GT..T.................. NC_037010.1_Rhinichthys_obtusus_ T..T......G.T.C....C..........T.....A..T........T.....C...T..T.......A.......... NC_037014.1_Notropis_hudsonius_i ...T..G.....T.CC....................A........T..T.....C...T..T.G.....T..A.....T. NC_037015.1_Exoglossum_maxilling ...C......G.T.................T.....A.................C...T..T..........A..G.... NC_054086.1_Ptychocheilus_lucius T..C......G.T.C............G.....G..C..A........T.....C..............T..C....... NC_054257.1_Gila_cypha_isolate_S T..C......G.T.C............A........C..A........T.....C..G...........T..C....... NC_054259.1_Gila_nigrescens_isol T..T......G......................G..C..A........T.....C..G...........T..C....... NC_054260.1_Hybognathus_amarus_i ...T........T.C............A..T.....A..T.....T..T.....C...T.GT..........A....... NC_054262.1_Notropis_jemezanus_v ...CG.T..G....C...C...........T.....A........T..T..G..C......T.................. Pimephales_notatus_R2S3_________ ...T..C.....T.C...............T........T.....T..T.....C...T..T.......T..T....... Pimephales_tenellus_tenellu_R2S1 T..T..C.....T.C...G........T..T.....A..A..T..T.....G..C...T.GT.......T.....G.... Pimephales_tenellus_parvice_R2S2 T..T..C.....T.C............T..T.....A..A..T..T.....G..C...T.GT.......T.......... Pimephales_notatus_R1S1_________ ...T..C.....T.C...............T........T.....T..T.....C...T..T.......T..T....... MG570452.1_Pimephales_promelas_i ...T..T.....T.C...............T..G..G..A..T..T..T.....C...T.GT..........T....... MG570452.1_Pimephales_promelas_S ...T..C..G..T.C...............T.....G..A..T..T..T.....C...T.GT..........T....... AB626850.1_Megalobrama_terminali TTACATGAGCCCACCACAGCATCATAGAAGGTGAACGAAAACAAGCCATCCAATCCCTCGCACTCACAATTCTACTAGGA AP010779.1_Mylocheilus_caurinus_ .C....................T..G.....C.................T..G..T...A....T............... AP011215.1_Gila_sp._1460_mitocho ....C.......................G..............G..T..T........A...........C..T...... AP011263.1_Scardinius_erythropht .C.................T..T..G..G....................T.....T..T.....T......A.T..G..G AP011267.1_Algansea_lacustris_mi .C..............T.....T.....G..C.....G...........T.....T...A....T.....C.....G..G AP011268.1_Yuriria_alta_mitochon ..........T.....T..T..T..G.....C.................T........TA....T.....C..G..G... AP011273.1_Hybognathus_nuchalis_ ..........T..T..T..T..T..........................T........T.....T...........G..G AP011274.1_Couesius_plumbeus_mit ..........T.......................G.................G.....GA....T......T....C... AP011275.1_Platygobio_gracilis_m .C.................T..T.....G..A........G.....T..T.....T........T........G...... AP011277.1_Erimystax_dissimilis_ .............T........T...........G..............T..G..T..T.....T........C..G... AP011279.1_Pimephales_promelas_m .C........T..T.....T..T.....G....................T.....T..T..T..T.....C..G.....G AP011280.1_Clinostomus_elongatus .C...........T..T..T..T........C.....G...........T.....T........T......T.......G AP012079.1_Luxilus_chrysocephalu ...................T..T..............G...........T........T.....T........G..T..G AP012080.1_Macrhybopsis_gelida_m ...................T..T.......................A..T........TA....T..T..CT..T....G AP012083.1_Notropis_atherinoides .C........T...........T.....G....................T..G.....T..............C..G..T AP012084.1_Notropis_baileyi_mito .............T................................T..T........T.....T..C........G..G AP012087.1_Cyprinella_galactura_ .............T........T.................G.................T........G..C..GT....G AP012088.1_Hybopsis_lineapunctat .C.....G..............T..........................T........T.................G... AP012090.1_Luxilus_cornutus_mito .............T........T..G..G..C.......................T..TA....T..G.....G..G..C AP012091.1_Lythrurus_ardens_mito .A...........T.....T..T..G..G..C........G........T........TA....T..T.....G..C..G AP012092.1_Lythrurus_fumeus_mito ....G........T.....T..T..G.......................T........T.....T........G..C..G AP012093.1_Lythrurus_lirus_mitoc .A...........T.....T..T.....G..C........G........T........TA....T..T.....G..C..G AP012094.1_Lythrurus_umbratilis_ .A.....G.....T.....T..T..G..G..C........G........T........TA....T..T.....G..C..G AP012095.1_Macrhybopsis_meeki_mi .......G........T..T..T..........................T........TA....T..T..CT..T....T AP012097.1_Notropis_bifrenatus_m ..........T........T..T..G.......................T........T.....T........G..G..G AP012098.1_Pimephales_sp._MCZunc .C........T..T..T..T..T...........G..............T..G.....T.....T........G.....G AP012100.1_Notropis_telescopus_m ................T..T.....G..G..C.................T........T.....T............... AP012101.1_Pimephales_notatus_mi ..........T..T..T..T..T...........G..............T..G.....T.....T........G.....G AP012102.1_Pimephales_vigilax_mi .C........T..T..T..T..T........C........G........T........T.....T..G.....C.....G AP012103.1_Pogonichthys_macrolep .C.............................A.................T..G.....T.....T........G...... AP012106.1_Richardsonius_balteat .G.....G.....T..T..T..T........C...........G.....T.....T..T.....T...........G... AP012108.1_Notropis_chrosomus_mi .............T.....T..T.......................T..T.....T..T.....T..G.....G.....G AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .C........T..T..T..T..T........C........G........T........T.....T..G.....C.....G Pimephales_vigilax_R1S3_________ .C........T..T..T..T..T........C........G........T........T.....T..G.....C.....G DQ536429.1_Notropis_stramineus_m ....G..G.....T........T.................G........T.....T..T.....T........G..C..G JX910141.1_Squaliobarbus_curricu .C..............T...........G...............A..............A....T.....CT.G...... KC351187.1_Squaliobarbus_curricu .C..............T...........G...............A...................T.....CT.G...... KT278765.1_Pimephales_promelas_m .C........T..T..T..T..T..........................T.....T..T.....T.....C..G..C..G KT289925.1_Pimephales_promelas_m .C........T..T.....T..T.....G....................T.....T..T..T..T.....C..G.....G KT424924.1_Rhinichthys_osculus_m .C.................T..T..............C...........T.....T..TA....T.....C..GT..... KU200257.1_Chanodichthys_ilishae .C..............T.....T...........G.......................T..............G..C... MF972070.1_Siphateles_bicolor_mo ....C.................T.....G........G.....G.....T........G.....T........T...... MG570407.1_Notropis_chalybaeus_v .......G...........T..............G...........T..T........T.....T..C........G..T MG570408.1_Notropis_bifrenatus_v ..........T........T..T..G.......................T........T.....T........G..G..G MG570413.1_Notropis_heterolepis_ .C.....G.................G..G....................T........T.....A..G........C..G MG570416.1_Rhinichthys_obtusus_v ...................T......C.G..C.....G...........T..G..T.....G..T.....C...T..... MG570417.1_Rhinichthys_obtusus_v ...................T......C.G..C.....G...........T..G..T.....G..T.....C...T..... MG570420.1_Pimephales_notatus_vo .C........T..T..T..T..T...........G..............T..G.....T.....T........G.....G MG570443.1_Notropis_hudsonius_is ......................T..G........G..T...........T.....T..T.....T.........T..... MG570444.1_Rhinichthys_atratulus ...................T..T.....G..C.....G...........T.....T........T.....C...T..... MG570445.1_Rhinichthys_atratulus ...................T..T.....G..C.....G...........T.....T........T.....C...T..... MG570447.1_Luxilus_cornutus_isol .C...........T........T..G..G..C.................T.....T..TA....T..G.....G..G..C MG570449.1_Luxilus_cornutus_isol .C...........T........T..G..G..C.................T.....T..TA....T..G.....G..G..C MG570450.1_Pimephales_notatus_is .C........T..T..T..T..T...........G..............T..G.....T.....T........G.....G MG570451.1_Notropis_bifrenatus_i ..........T........T..T..G.......................T........T.....T........G..G..G MG570453.1_Exoglossum_maxillingu .............T........T...........G..............T..G..T..T.....T........C..G... MG570454.1_Pimephales_promelas_i .C........T..T.....T..T.....G....................T.....T..T..T..T.....C..G.....G MG570455.1_Notropis_atherinoides .C........T...........T.....G....................T..G.....T.....T........C..G..T MG570456.1_Notropis_atherinoides .C........T...........T.....G....................T..G.....T..............C..G..T MG570457.1_Pimephales_notatus_is .C........T..T..T..T..T...........G..............T..G.....TA....T........G.....G MG570458.1_Pimephales_notatus_is .C........T..T..T..T..T...........G..............T..G.....T.....T........G.....G MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .......G...........T..T.......................T........T..T.....T..............G MT364325.1_Hybognathus_amarus_mi ..........T..T..T..T.................G...........T........TA....G...........G..G MT501368.1_Gila_cypha_isolate_SN ....C.......................G..............G.....T..G.....A..............T...... MT501369.1_Notropis_simus_pecose ....G........T........T.....G..C............A.T..T........T..G..T..G.....G.....G MT501378.1_Hybognathus_amarus_is ..........T..T..T..T.................G...........T..G.....TA....A...........G..G MT501385.1_Notropis_jemezanus_vo .C........T......................................T........T........G.....C..G..T MT501391.1_Rhinichthys_osculus_i .C....................T..............G...........T.....T..T.....T.....C........G MT667239.1_Rhinichthys_osculus_t .C.....GA.............T..............G...........T.....T..T.....T.....C........G MT667242.1_Luxilus_cornutus_vouc .C...........T........T..G..G..C.................T.....T..TA....T..G.....G..G..C MW300340.1_Hybognathus_placitus_ .............T.....T..T..G.......................T..G.....T.....T........G.....G MW300341.1_Hybognathus_placitus_ .............T.....T..T..G.......................T..G.....T.....T........G.....G NC_013763.1_Mylocheilus_caurinus .C....................T..G.....C.................T..G..T...A....T............... NC_033926.1_Opsopoeodus_emiliae_ .............T.....T..T......C...................T........T.....T...........C..G NC_037008.1_Notropis_chalybaeus_ .......G...........T..............G...........T..T........T.....T..C........G..T NC_037009.1_Notropis_heterolepis .C.....G.................G..G....................T........T.....A..G........C..G NC_037010.1_Rhinichthys_obtusus_ ...................T......C.G..C.....G...........T..G..T.....G..T.....C...T..... NC_037014.1_Notropis_hudsonius_i ......................T..G........G..T...........T.....T..T.....T.........T..... NC_037015.1_Exoglossum_maxilling .............T........T...........G..............T..G..T..T.....T........C..G... NC_054086.1_Ptychocheilus_lucius ............................G..C........G..G.....T..G.....A..............T...... NC_054257.1_Gila_cypha_isolate_S ....C.......................G..............G.....T..G.....A..............T...... NC_054259.1_Gila_nigrescens_isol ....C.......................G..............G.....T........A..............T.....G NC_054260.1_Hybognathus_amarus_i ..........T..T..T..T.................G...........T........TA....G...........G..G NC_054262.1_Notropis_jemezanus_v .C........T.................G....................T........T........G.....C..G..T Pimephales_notatus_R2S3_________ .............T..T..T........G..C.................T........T..............G.....G Pimephales_tenellus_tenellu_R2S1 ..........T..T.....T..T..........................T........T.....T.........T....G Pimephales_tenellus_parvice_R2S2 ..........T..T.....T..T..........................T........T.....T........GT....G Pimephales_notatus_R1S1_________ .............T..T..T........G..C.................T........T..............G.....G MG570452.1_Pimephales_promelas_i .C........T..T.....T..T.....G....................T.....T..T..T..T.....C..G.....G MG570452.1_Pimephales_promelas_S .C........T..T.....T..T.....G....................T.....T..T..T..T.....C..G.....G AB626850.1_Megalobrama_terminali CTTTACTTCACTGCCCTCCAAGCCATAGAATACTACGAGGCCCCCTTCACAATTGCAGACGGAGTATACGGCTCTACATT AP010779.1_Mylocheilus_caurinus_ T....T..T.......................T........A..T..T.....C.......................... AP011215.1_Gila_sp._1460_mitocho T................T.....A..............A..A..T..T..............T........T.....G.. AP011263.1_Scardinius_erythropht G.C..T..T.....G..T..G....................A..T..T.....C.......................... AP011267.1_Algansea_lacustris_mi T.C.....T..............A.....G..T..T..A..A..T........C...........G..T.....A..... AP011268.1_Yuriria_alta_mitochon T.C..T..T...........G..A........T..T..A..A..T..T..............G..C..T.....A..... AP011273.1_Hybognathus_nuchalis_ T.C..T..T..C.....T.....A...........T..A..A..T..T..........................A..... AP011274.1_Couesius_plumbeus_mit T.......T..A..............G..G..T..T..A..G..T........C........C................. AP011275.1_Platygobio_gracilis_m T....T..T..............A.....G.....T..A..A..T.................C.....T........... AP011277.1_Erimystax_dissimilis_ T.......T.....T........T........T.....A..A..T..T..C..C..............T........... AP011279.1_Pimephales_promelas_m T.C..T..T..............A..G.....T..T..A..A..T..T..........................A..... AP011280.1_Clinostomus_elongatus T....T..T........T..............T..T..A..A..T..........................T........ AP012079.1_Luxilus_chrysocephalu T.C..T..T..............A.....G...........A..T..T...........T.....G........A..... AP012080.1_Macrhybopsis_gelida_m T......................G.....G.....T..A..A..T..T........C...........T........... AP012083.1_Notropis_atherinoides T.C..T...........T..G..A........T..T..A..A..T..T..G..............G........A..... AP012084.1_Notropis_baileyi_mito T.C..T..T........T.....A...........T.....A..T..T...........T.....C........A..... AP012087.1_Cyprinella_galactura_ T.C..T....................G..G..T..T..A..A.....T.....C..............T.....A..... AP012088.1_Hybopsis_lineapunctat T.C..T...........T.....A........T..T..A..A..T..T........T.................A..... AP012090.1_Luxilus_cornutus_mito T.C..T..T..............A...........T..A..A..T..T...........T..G..C........A..... AP012091.1_Lythrurus_ardens_mito T.C..T..T..............A..G.....T..T..A..A..T.......................T.....A..G.. AP012092.1_Lythrurus_fumeus_mito T.C..T.................A........T.....A..A..T..........................T..A..... AP012093.1_Lythrurus_lirus_mitoc T.C..T..T..............A..G.....T..T..A..A..T....................G..T.....A..... AP012094.1_Lythrurus_umbratilis_ T.C..T..T..............A..G.....T..T..A..A..T.......................T.....A..G.. AP012095.1_Macrhybopsis_meeki_mi T....T.................A.....G.....T..A..A..T..T.....C.....T..G.....T........... AP012097.1_Notropis_bifrenatus_m T.C..T..T..............A........T..T..A..A.....T....................T.....A..... AP012098.1_Pimephales_sp._MCZunc T.C..T..T.....T........A........T..T..A..A..T..............T..............A..... AP012100.1_Notropis_telescopus_m T.C..T..T........T..G..A........T.....A..A.....T.................G........A..... AP012101.1_Pimephales_notatus_mi T.C..T..T.....T........A........T..T..A..A..T..............T..............A..... AP012102.1_Pimephales_vigilax_mi T....T..T....T...T.....A........T.....A..A..T..T....................T.....A..... AP012103.1_Pogonichthys_macrolep T....T..T.......................T........A..T........C.....T.................... AP012106.1_Richardsonius_balteat T....T..T........T.....T........T..T..A..A..T..T..C..C.......................... AP012108.1_Notropis_chrosomus_mi T.C..T..T........T........G.....T.....A..A..T..T...........T..............A..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T....T..T....T...T.....A........T.....A..A..T..T....................T.....A..... Pimephales_vigilax_R1S3_________ T....T..T....T...T.....A........T.....A..A..T..T....................T.....A..... DQ536429.1_Notropis_stramineus_m T.C..T..T........T.....T...........T..A..G..T..T..C.......................A..... JX910141.1_Squaliobarbus_curricu T............................G.....T..A..A..T..T.....C..............T........... KC351187.1_Squaliobarbus_curricu T............................G.....T..A..A..T..T.....C..............T........... KT278765.1_Pimephales_promelas_m T.C..T..T..............A..G.....T..T..A..A..T..T..........................A..... KT289925.1_Pimephales_promelas_m T.C..T..T........T.....A..G.....T..T..A..A..T..T..........................A..... KT424924.1_Rhinichthys_osculus_m T....T..T...........G...........T..T..A..A..T..T....................T.....A..... KU200257.1_Chanodichthys_ilishae ..C..............T.................T..A..A..T..T.....C.......................... MF972070.1_Siphateles_bicolor_mo ........T........T.....A..............A..G..T..T....................T........... MG570407.1_Notropis_chalybaeus_v T.C..T..T..............A...........T..A..A..T..T...........T........T.....A..... MG570408.1_Notropis_bifrenatus_v T.C..T..T..............A........T..T..A..A.....T....................T.....A..... MG570413.1_Notropis_heterolepis_ T.C..T..T......T.A..G..A...........T..A..G..T..T.................G........A..... MG570416.1_Rhinichthys_obtusus_v T....T..T.............G.........T..T..A..A..T..T................................ MG570417.1_Rhinichthys_obtusus_v T....T..T.............G.........T..T..A..A..T..T................................ MG570420.1_Pimephales_notatus_vo T.C..T..T.....T........A........T..T..A..A..T..............T..............A..... MG570443.1_Notropis_hudsonius_is T.C..T..T...A..........A.....G.....T..A..A..T..T.....C...........G..T..T..A..... MG570444.1_Rhinichthys_atratulus T....T..T.............G.........T..T..A..A..T..T.............................G.. MG570445.1_Rhinichthys_atratulus T....T..T.............G.........T..T..A..A..T..T..G..........................G.. MG570447.1_Luxilus_cornutus_isol T.C..T..T..............A...........T..A..A..T..T...........T..G..C........A..... MG570449.1_Luxilus_cornutus_isol T.C..T..T..............A...........T..A..A..T..T...........T..G..C........A..... MG570450.1_Pimephales_notatus_is T.C..T..T.....T........A........T..T..A..A..T..............T..............A..... MG570451.1_Notropis_bifrenatus_i T.C..T..T..............A........T..T..A..A.....T....................T.....A..... MG570453.1_Exoglossum_maxillingu T.......T.....T.....G..T........T.....A..A..T..T..C..C..............T........... MG570454.1_Pimephales_promelas_i T.C..T..T..............A..G.....T..T..A..A..T..T..........................A..... MG570455.1_Notropis_atherinoides T.C..T...........T..G..A........T..T..A..A..T..T..G..............G........A..... MG570456.1_Notropis_atherinoides T.C..T...........T..G..A........T..T..A..A..T..T..G..............G........A..... MG570457.1_Pimephales_notatus_is T.C..T..T.....T........A........T..T..A..A..T..............T..............A..... MG570458.1_Pimephales_notatus_is T.C..T..T.....T........A........T..T..A..A..T..............T..............A..... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v T....T..T.....T........T........T..T..A..G..T..............T........T.....A..... MT364325.1_Hybognathus_amarus_mi T....T..T..C.....T.....A...........T..A..A..T.............................A..... MT501368.1_Gila_cypha_isolate_SN T....T........T..T.....A..............A..A..T..T..G........T..C.....T..T........ MT501369.1_Notropis_simus_pecose T.C..T..T...........G..A...........T..A..A..T........C.....T.....G........A..... MT501378.1_Hybognathus_amarus_is T....T..T..C.....T.....A...........T..A..A..T.............................A..... MT501385.1_Notropis_jemezanus_vo T.C..T...........T..G..A...........T.....A..T.................C...........A..... MT501391.1_Rhinichthys_osculus_i T....T..T...........G...........T..T..A..A..T..T........G...........T.....G..... MT667239.1_Rhinichthys_osculus_t T....T..T...........G...........T..T..A..A..T..T........G...........T.....G..... MT667242.1_Luxilus_cornutus_vouc T.C..T..T..............A...........T..A..A..T..T...........T..G..C........A..... MW300340.1_Hybognathus_placitus_ T.C..T..T.....T..T.....A.....G.....T..A..A..T..T..........................A..C.. MW300341.1_Hybognathus_placitus_ T.C..T..T.....T..T.....A.....G.....T..A..A..T..T..........................A..C.. NC_013763.1_Mylocheilus_caurinus T....T..T.......................T........A..T..T.....C.......................... NC_033926.1_Opsopoeodus_emiliae_ T.C..T..T.....T..T....TG...........T..A..A..T..T.....C..............T..T..A..... NC_037008.1_Notropis_chalybaeus_ T.C..T..T..............A...........T..A..A..T..T...........T........T.....A..... NC_037009.1_Notropis_heterolepis T.C..T..T......T.A..G..A...........T..A..G..T..T.................G........A..... NC_037010.1_Rhinichthys_obtusus_ T....T..T.............G.........T..T..A..A..T..T................................ NC_037014.1_Notropis_hudsonius_i T.C..T..T...A..........A.....G.....T..A..A..T..T.....C...........G..T..T..A..... NC_037015.1_Exoglossum_maxilling T.......T.....T.....G..T........T.....A..A..T..T..C..C..............T........... NC_054086.1_Ptychocheilus_lucius T................T..G..A..............A..A..T..T..............T........T........ NC_054257.1_Gila_cypha_isolate_S T....T........T..T.....A..............A..A..T..T..G........T..C.....T..T........ NC_054259.1_Gila_nigrescens_isol T................T.....A..............A..A..T..T..............T........T........ NC_054260.1_Hybognathus_amarus_i T....T..T..C.....T.....A...........T..A..A..T.............................A..... NC_054262.1_Notropis_jemezanus_v T.C..T...........T..G..A...........T.....A..T.................C...........A..... Pimephales_notatus_R2S3_________ T.C..T..T.....T........A...........T..A..A..T..T..G...........G...........A..... Pimephales_tenellus_tenellu_R2S1 T.C.....T..............A.....G..T..T..A..G..T..T...........T........T.....A..... Pimephales_tenellus_parvice_R2S2 T.C.....T..............A.....G..T..T..A..G..T..T...........T........T.....A..... Pimephales_notatus_R1S1_________ T.C..T..T.....T........A...........T..A..A..T..T..G...........G...........A..... MG570452.1_Pimephales_promelas_i T.C..T..T..............A..G.....T..T..A..A..T..T..........................A..... MG570452.1_Pimephales_promelas_S T.C..T..T..............A..G.....T..T..A..A..T..T..........................A..... AB626850.1_Megalobrama_terminali CTTTGTGGCCACAGGATTCCATGGACTACATGTCATTATCGGGTCATCATTCCTGGCTGTCTGTCTTCTCCGCCAAATCC AP010779.1_Mylocheilus_caurinus_ .....................C.....T.....T..C.....C...A.C..TT.A..C..G..............G..T. AP011215.1_Gila_sp._1460_mitocho ...C..A........C...........C..C..T.....T..A...A.C........C.....C..............T. AP011263.1_Scardinius_erythropht .....................C..C........T.....T..C...A.C.....A.....A..............G..T. AP011267.1_Algansea_lacustris_mi ......A..............C.....G...........T..C...A.C..T..A..C..T..............G..T. AP011268.1_Yuriria_alta_mitochon ............G..G.........T.............T..C...A.C...T.A..C...........A........T. AP011273.1_Hybognathus_nuchalis_ ......C..T.....G.......................T..C...A.C..TT.A..............T........T. AP011274.1_Couesius_plumbeus_mit ...C.....T...........C..G........T.....T..C...A.C........G..A..C........T..G..T. AP011275.1_Platygobio_gracilis_m ......A..............C...T.............T..C...A.C..TT.A..C.................G..T. AP011277.1_Erimystax_dissimilis_ ......C..............C.................T..C...A.C..T...........C..C........G..T. AP011279.1_Pimephales_promelas_m ......C..T.....T.........T.G...........T..C...A.C...T.A..C.....C...A..........T. AP011280.1_Clinostomus_elongatus ......A..A.......................T.....T..C...A.C..TT.A..C..A..C..C........G..T. AP012079.1_Luxilus_chrysocephalu ......A........G.....C...T.............T..C...A.C..TT.A..A.....C............G.T. AP012080.1_Macrhybopsis_gelida_m ......A..............C...T....C..T.....T..C...A.C..TT.A..C....................T. AP012083.1_Notropis_atherinoides ......C........G.....C...T..........C..T..C...A.C...T.A..CA.............T...G... AP012084.1_Notropis_baileyi_mito ......A..............C.................T..C...A.C.....A..C..A.................T. AP012087.1_Cyprinella_galactura_ ...C.....T...............T.............T..C...A.C...T.A..C..A..C.....A.......... AP012088.1_Hybopsis_lineapunctat .........T..G........C.................T..C...A.C...T.A..C.....C..............T. AP012090.1_Luxilus_cornutus_mito .....................C...T.............T..C...A.C..TT.A..C....................T. AP012091.1_Lythrurus_ardens_mito ......A..............C...T.............T..C..GA.C...T.A..C..................G.T. AP012092.1_Lythrurus_fumeus_mito ......T..............C...T..........C..T..C...A.C...........T..............GG.T. AP012093.1_Lythrurus_lirus_mitoc ......A..............C...T.............T..C...A.C...T.A..C..................G.T. AP012094.1_Lythrurus_umbratilis_ ...C..A..............C...T.............T..C..GA.C...T.A..C..................G.T. AP012095.1_Macrhybopsis_meeki_mi ......A........T........CT.G..C..T.....T..C...A.C..TT.A..C....................T. AP012097.1_Notropis_bifrenatus_m ......A.....C..........................T..C..TA.C...T.A..C..T.................T. AP012098.1_Pimephales_sp._MCZunc ......T..........................T..C..T..C...A.C.....A..C..T.................T. AP012100.1_Notropis_telescopus_m .....................C........C...........C...A.C...T....C....................T. AP012101.1_Pimephales_notatus_mi ......T..................T.......T..C..T..C...A.C.....A..C..T.................T. AP012102.1_Pimephales_vigilax_mi ......T..T..............T..............T..C...A.C...T.A..CA.T.....C...........T. AP012103.1_Pogonichthys_macrolep ..................T..C...T.......T..C.....C...A.C..TT.A..C..G.....C...........T. AP012106.1_Richardsonius_balteat ......A..T..G........C........C..T..C..T..C...A.C..TT.A.....G..C...........G..T. AP012108.1_Notropis_chrosomus_mi ......A................................T..C..GA.C...T.A..C..G.................T. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ......T..T..............T..............T..C...A.C...T.A..CA.T.....C...........T. Pimephales_vigilax_R1S3_________ ......T..T..............T..............T..C...A.C...T.A..CA.T.....C...........T. DQ536429.1_Notropis_stramineus_m ...............C.....C.....T..............C...A.C...T.A..C.................G.... JX910141.1_Squaliobarbus_curricu ...C..A.....G..C.....C........C........T..C...A.......A..C..G.....C............. KC351187.1_Squaliobarbus_curricu ...C..A.....G..C.....C........C........T..C...A.......A..C..G.....C............. KT278765.1_Pimephales_promelas_m ......C..T...............T.......T.....T..C...A.C...T.A..C.....C...A..........T. KT289925.1_Pimephales_promelas_m ......C..T.....T.........T.G...........T..C...A.C...T.A..C.....C...A..........T. KT424924.1_Rhinichthys_osculus_m T.....T........C.....C..G..............T..C...A.C..TT.A...........C.....G.....T. KU200257.1_Chanodichthys_ilishae ...C...........G.....C..G..............T..A.................T..C..C............. MF972070.1_Siphateles_bicolor_mo ...C..A..T.....C...........C.....T.....T..T...A.C........C..G..C..............T. MG570407.1_Notropis_chalybaeus_v ......A..T...........C..T..............T..C...A.C.....A.....A.................T. MG570408.1_Notropis_bifrenatus_v ......A.....C..........................T..C..TA.C...T.A..C..T.................T. MG570413.1_Notropis_heterolepis_ ............G........C...T................C...A.C...T.A..C.....C..............T. MG570416.1_Rhinichthys_obtusus_v ......T..T...........C...........T........C...A.C..T..A..C.....C........T..G..T. MG570417.1_Rhinichthys_obtusus_v ......T..T...........C...........T........C...A.C..T..A..C.....C........T..G..T. MG570420.1_Pimephales_notatus_vo ......T..........................T..C..T..C...A.C.....A..C..T.................T. MG570443.1_Notropis_hudsonius_is ......A........C.....C...T.......A.....T..C...A.C..TT.A..C..T.................T. MG570444.1_Rhinichthys_atratulus ......C..T...........C...........T........C...A.C..TT..........C...........G..T. MG570445.1_Rhinichthys_atratulus ......C..T...........C...........T........C...A.C..TT..........C...........G..T. MG570447.1_Luxilus_cornutus_isol .....................C...T..........C..T..C...A.C..TT.A..C....................T. MG570449.1_Luxilus_cornutus_isol .....................C...T..........C..T..C...A.C..TT.A..C....................T. MG570450.1_Pimephales_notatus_is ......T..........................T..C..T..C...A.C.....A..C..T.................T. MG570451.1_Notropis_bifrenatus_i ......A.....C..........................T..C..TA.C...T.A..C..T.................T. MG570453.1_Exoglossum_maxillingu ......C..............C.................T..C...A.C..T...........C..C........G..T. MG570454.1_Pimephales_promelas_i ......C..T.....T.........T.G...........T..C...A.C...T.A..C.....C...A..........T. MG570455.1_Notropis_atherinoides ......C........G.....C...T..........C..T..C...A.C...T.A..CA.............T...G... MG570456.1_Notropis_atherinoides ......C........G.....C...T..........C..T..C...A.C...T.A..CA.............T...G... MG570457.1_Pimephales_notatus_is ......T..........................T..C..T..C...A.C.....A..C..T.................T. MG570458.1_Pimephales_notatus_is ......T..........................T..C..T..C...A.C.....A..C..T.................T. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ......A..T...............T.......T.....T..C...A.C..TT.A..C..G..C..C.........G.T. MT364325.1_Hybognathus_amarus_mi ......C..T.....G.........T.............T..T...A.C..TT.A..C..............T.....T. MT501368.1_Gila_cypha_isolate_SN ...C..A........C.....C.....C.....T.....T......A.C........C.....C..............T. MT501369.1_Notropis_simus_pecose ......A..............C...........T.....T..C...A.C...T.A..C..A...............G.T. MT501378.1_Hybognathus_amarus_is ......C..T.....G.........T.............T..T...A.C..TT.A..C..............T.....T. MT501385.1_Notropis_jemezanus_vo ...C.................C..GT.G........C..T..C...A.C...T.A..CA.................G... MT501391.1_Rhinichthys_osculus_i T.....C........C.....C...........T.....T..C...A.C..TT.A............A....G.....T. MT667239.1_Rhinichthys_osculus_t T.....C........C.....C...........T.....T..C...A.C..TT.A............A....G.....T. MT667242.1_Luxilus_cornutus_vouc .....................C...T..........C..T..C...A.C..TT.A..C....................T. MW300340.1_Hybognathus_placitus_ ......T..T...............T.............T..C...A.C..TT.A..C....................T. MW300341.1_Hybognathus_placitus_ ......T..T...............T.............T..C...A.C..TT.A..C....................T. NC_013763.1_Mylocheilus_caurinus .....................C.....T.....T..C.....C...A.C..TT.A..C..G..............G..T. NC_033926.1_Opsopoeodus_emiliae_ ......T..T..T.....T......T.............T..C...A.C..TT.A..C..G................... NC_037008.1_Notropis_chalybaeus_ ......A..T...........C..T..............T..C...A.C.....A.....A.................T. NC_037009.1_Notropis_heterolepis ............G........C...T................C...A.C...T.A..C.....C..............T. NC_037010.1_Rhinichthys_obtusus_ ......T..T...........C...........T........C...A.C..T..A..C.....C........T..G..T. NC_037014.1_Notropis_hudsonius_i ......A........C.....C...T.......A.....T..C...A.C..TT.A..C..T.................T. NC_037015.1_Exoglossum_maxilling ......C..............C.................T..C...A.C..T...........C..C........G..T. NC_054086.1_Ptychocheilus_lucius ...C..A........C...........C...........T..A...A.C........C.....C..............T. NC_054257.1_Gila_cypha_isolate_S ...C..A........C.....C.....C.....T.....T......A.C........C.....C..............T. NC_054259.1_Gila_nigrescens_isol ...C..A........C...........C.....T.....T......A.C........C.....C..............T. NC_054260.1_Hybognathus_amarus_i ......C..T.....G.........T.............T..T...A.C..TT.A..C..............T.....T. NC_054262.1_Notropis_jemezanus_v ...C.................C..GT.G........C..T..C...A.C...T.A..CA.................G... Pimephales_notatus_R2S3_________ ......T..................T.......A.....T..C...A.......A..C..T.................T. Pimephales_tenellus_tenellu_R2S1 ......T.................CT.......T.....T..C...A.C...T.A..C....................T. Pimephales_tenellus_parvice_R2S2 ......T.................CT.......T.....T..C...A.C...T.A..C....................T. Pimephales_notatus_R1S1_________ ......T..................T.......A.....T..C...A.......A..C..T.................T. MG570452.1_Pimephales_promelas_i ......C..T.....T.........T.G...........T..C...A.C...T.A..C.....C...A..........T. MG570452.1_Pimephales_promelas_S ......C..T.....T.........T.G...........T..C...A.C...T.A..C.....C...A..........T. AB626850.1_Megalobrama_terminali AATACCACTTTACATCCGAACATCACTTCGGCTTCGAAGCCGCCGCTTGATATTGACACTTTGTTGACGTAGTATGACTG AP010779.1_Mylocheilus_caurinus_ ..................................T..G.....T..C.....C........C..C..............A AP011215.1_Gila_sp._1460_mitocho .G.......................T........T........T..C.....C........C...............T.A AP011263.1_Scardinius_erythropht ......................C...........T........T..C.....C.....T.....C........G.....A AP011267.1_Algansea_lacustris_mi .............G..T.....C..T........T........T..C.....C...........A........G...T.A AP011268.1_Yuriria_alta_mitochon .......T..............C...........T........T........C...........A........G...T.A AP011273.1_Hybognathus_nuchalis_ .......T..............C...........T........A..A.....C...........G........C...T.A AP011274.1_Couesius_plumbeus_mit ................T...........T.....T........T..C.....C.....T..................T.A AP011275.1_Platygobio_gracilis_m .............C...........T........T........T..C..G..............A..............A AP011277.1_Erimystax_dissimilis_ ................T.....C..T........T........T..C..G...........C..A.....G..C.....A AP011279.1_Pimephales_promelas_m ..........C.....T..........................T..A.....C...........A..............A AP011280.1_Clinostomus_elongatus .........................T........T........T..............T.....C........G...T.A AP012079.1_Luxilus_chrysocephalu ......................C...........T........T..C.....C...........A............T.A AP012080.1_Macrhybopsis_gelida_m .............C..T........T........T..G.....T..C..G...........C..A..T...........A AP012083.1_Notropis_atherinoides .......T........T.................T........T..C.....C...........G............T.A AP012084.1_Notropis_baileyi_mito ................T.....C...........T........T........C...........A.....G..G...T.A AP012087.1_Cyprinella_galactura_ .......T........A.................T........T........C..G........A............T.A AP012088.1_Hybopsis_lineapunctat ......................C..T........T.....T..T..C.....C...........A........T...T.A AP012090.1_Luxilus_cornutus_mito ......................C...........T........T..G..............C..A............T.A AP012091.1_Lythrurus_ardens_mito ................A.....C...........T........T........C........C..A............T.A AP012092.1_Lythrurus_fumeus_mito ..........C.....A.....C....................T........C...........G............T.A AP012093.1_Lythrurus_lirus_mitoc .......T........A.....C...........T........T........C...........A............T.A AP012094.1_Lythrurus_umbratilis_ ................A.....C...........T........T........C........C..A............T.A AP012095.1_Macrhybopsis_meeki_mi .G...........C..T........T........T........T..C..G...........C..A............T.A AP012097.1_Notropis_bifrenatus_m ......................C...........T........A........C.....T.....A..............A AP012098.1_Pimephales_sp._MCZunc ................T.................T........T........C.....T.....A..............A AP012100.1_Notropis_telescopus_m ......................C...........T........T..C.....C...........A.....G..G...... AP012101.1_Pimephales_notatus_mi ................T.................T........T........C.....T.....A..............A AP012102.1_Pimephales_vigilax_mi ....T...........T.....C....................A........C.....T.....A.....G..G...T.A AP012103.1_Pogonichthys_macrolep .........................T........T........T..C.....C........C..C........G.....A AP012106.1_Richardsonius_balteat .........................T........T..G.....T..C.................A..............A AP012108.1_Notropis_chrosomus_mi ......................C...........T........T........C...........A............T.A AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....T...........T.....C....................A........C.....T.....A.....G..G...T.A Pimephales_vigilax_R1S3_________ ....T...........T.....C....................A........C.....T.....A.....G..G...T.A DQ536429.1_Notropis_stramineus_m .............G..T.....C...........T........T..C.....C...........A........G...T.A JX910141.1_Squaliobarbus_curricu ..........C...........C..............G........C..............C..C........G.....A KC351187.1_Squaliobarbus_curricu ..........C...........C..............G........C..............C..C........G.....A KT278765.1_Pimephales_promelas_m ..........C.....T.................T..G.....T..G.....C...........A..............A KT289925.1_Pimephales_promelas_m ..........C.....T..........................T..A.....C...........A..............A KT424924.1_Rhinichthys_osculus_m ......................C..............G.....G..C..G..C.................G..G.....A KU200257.1_Chanodichthys_ilishae ................T........T........T...........C...........T..C.................A MF972070.1_Siphateles_bicolor_mo ....T....................T........T........T..C.....C........C...........G.....A MG570407.1_Notropis_chalybaeus_v ............................T.....T........T........C...........A............T.A MG570408.1_Notropis_bifrenatus_v ......................C...........T........A........C.....T.....A..............A MG570413.1_Notropis_heterolepis_ .G..............T.....C...........T........T....................C........C.....A MG570416.1_Rhinichthys_obtusus_v ....T...........T.....C...........T........T..C..G...........C........G........A MG570417.1_Rhinichthys_obtusus_v ....T...........T.....C...........T........T..C..G...........C........G........A MG570420.1_Pimephales_notatus_vo ................T.................T........T........C.....T.....A..............A MG570443.1_Notropis_hudsonius_is .G..............T.....C..T........T........T........C...........A........G.....A MG570444.1_Rhinichthys_atratulus ................T.....C...........T........T..C..G...........C.................A MG570445.1_Rhinichthys_atratulus ................T.....C...........T........T..C..G...........C.................A MG570447.1_Luxilus_cornutus_isol ......................C...........T........T..G..............C..A............T.A MG570449.1_Luxilus_cornutus_isol ......................C...........T........T..G..............C..A............T.A MG570450.1_Pimephales_notatus_is ................T.................T........T........C.....T.....A..............A MG570451.1_Notropis_bifrenatus_i ......................C...........T........A........C.....T.....A..............A MG570453.1_Exoglossum_maxillingu ................T.....C..T........T........T..C..G...........C..A.....G..C.....A MG570454.1_Pimephales_promelas_i ..........C.....T..........................T..A.....C...........A..............A MG570455.1_Notropis_atherinoides .......T........T.................T........T..C.....C...........A............T.A MG570456.1_Notropis_atherinoides .......T........T.................T........T..C.....C...........G............T.A MG570457.1_Pimephales_notatus_is ................T.................T........T........C.....T.....A..............A MG570458.1_Pimephales_notatus_is ................T.................T........T........C.....T.....A..............A MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .............C..............T.....T..G.....T..C.....C...........A............T.A MT364325.1_Hybognathus_amarus_mi .......T..............C...........T........A..A..G..C...........G........C...T.A MT501368.1_Gila_cypha_isolate_SN ................T........T.....T..T........T..C.....C........C...............T.A MT501369.1_Notropis_simus_pecose .............G........C...........T........T........C...........A............T.A MT501378.1_Hybognathus_amarus_is .......T..............C...........T........A..A..G..C...........G........C...T.A MT501385.1_Notropis_jemezanus_vo .......T........T.................T........T..C.....C...........A........G...T.A MT501391.1_Rhinichthys_osculus_i ...................G..C..T.....T...........T..C..G........T..C...........G.....A MT667239.1_Rhinichthys_osculus_t ...................G..C..T.....T...........T..C..G........T..C...........G.....A MT667242.1_Luxilus_cornutus_vouc ......................C...........T........T..G..............C..A............T.A MW300340.1_Hybognathus_placitus_ ..........C...........C...........T........A..A.....C...........G........G...T.A MW300341.1_Hybognathus_placitus_ ..........C...........C...........T........A..A.....C...........G........G...T.A NC_013763.1_Mylocheilus_caurinus ..................................T..G.....T..C.....C........C..C..............A NC_033926.1_Opsopoeodus_emiliae_ ..........C.......................T........T..C.....C........C..A..T.........T.A NC_037008.1_Notropis_chalybaeus_ ............................T.....T........T........C...........A............T.A NC_037009.1_Notropis_heterolepis .G..............T.....C...........T........T....................C........C.....A NC_037010.1_Rhinichthys_obtusus_ ....T...........T.....C...........T........T..C..G...........C........G........A NC_037014.1_Notropis_hudsonius_i .G..............T.....C..T........T........T........C...........A........G.....A NC_037015.1_Exoglossum_maxilling ................T.....C..T........T........T..C..G...........C..A.....G..C.....A NC_054086.1_Ptychocheilus_lucius ................T........T........T........T..C.....C........C...............T.A NC_054257.1_Gila_cypha_isolate_S ................T........T.....T..T........T..C.....C........C...............T.A NC_054259.1_Gila_nigrescens_isol ................T........T........T........T..C.....C........C.................A NC_054260.1_Hybognathus_amarus_i .......T..............C...........T........A..A..G..C...........G........C...T.A NC_054262.1_Notropis_jemezanus_v .......T........T.................T........T..C.....C...........A........G...T.A Pimephales_notatus_R2S3_________ ..........C.....T.................T........A........C.....T.....A........G...... Pimephales_tenellus_tenellu_R2S1 .......T..C.....T.....C...........T...........A.....C.....T.....A........C...T.A Pimephales_tenellus_parvice_R2S2 .......T..C.....T.................T...........A.....C.....T.....A........C...T.A Pimephales_notatus_R1S1_________ ..........C.....T.................T........A........C.....T.....A........G...... MG570452.1_Pimephales_promelas_i ..........C.....T..........................T..A.....C...........A..............A MG570452.1_Pimephales_promelas_S ..........C.....T..........................T..A.....C...........A..............A AB626850.1_Megalobrama_terminali TTCCTCTACGTATCCATCTATTGATGAGGCTCATAATCTTTCTAGTATTAAAGTTAGTACAAATGACTTCCAATCATTTA AP010779.1_Mylocheilus_caurinus_ .....T............................-...........................G................. AP011215.1_Gila_sp._1460_mitocho .....T........A..T................-................G..........G................. AP011263.1_Scardinius_erythropht .....T..............C.............-.............C.............G................. AP011267.1_Algansea_lacustris_mi .....T.....G..A...................-....................T......G................. AP011268.1_Yuriria_alta_mitochon .....T........A...................-....................T......G................. AP011273.1_Hybognathus_nuchalis_ .....T.....G..A.....C.............-....................T......G................. AP011274.1_Couesius_plumbeus_mit .....T............................-.........................G.G...............CG AP011275.1_Platygobio_gracilis_m .....T........A...................-....................T......G................. AP011277.1_Erimystax_dissimilis_ .....T........A...................-.................C.........................C. AP011279.1_Pimephales_promelas_m .....T........A..T..C.............-....................T......G................. AP011280.1_Clinostomus_elongatus .....T............................-................C..........G..........C....C. AP012079.1_Luxilus_chrysocephalu .....T........A...................-....................T......G................. AP012080.1_Macrhybopsis_gelida_m ..............A...................-....................T......G................. AP012083.1_Notropis_atherinoides .....T........A.....C.............-...........................G................. AP012084.1_Notropis_baileyi_mito ...T.A........A...................-....................T......G................. AP012087.1_Cyprinella_galactura_ .....T.....T..A.....C.............-....................T......G................. AP012088.1_Hybopsis_lineapunctat .....T.....G..A.....C.............-....................T......G................. AP012090.1_Luxilus_cornutus_mito .....T........A...................-....................T......G................. AP012091.1_Lythrurus_ardens_mito .....T........A...................-....................T......G................. AP012092.1_Lythrurus_fumeus_mito ...........G..A.....C.............-....................T......G................. AP012093.1_Lythrurus_lirus_mitoc .....T.....G..A...................-....................T......G................. AP012094.1_Lythrurus_umbratilis_ .....T........A...................-....................T......G................. AP012095.1_Macrhybopsis_meeki_mi ..............A...................-.............A......T......G................. AP012097.1_Notropis_bifrenatus_m .....T........A...................-....................T......G................. AP012098.1_Pimephales_sp._MCZunc .....T........A.....C.............-...........................G................. AP012100.1_Notropis_telescopus_m .....T.....G..A..T................-.............C......T......G................. AP012101.1_Pimephales_notatus_mi .....T........A.....C.............-...........................G................. AP012102.1_Pimephales_vigilax_mi .....T........A..T..C.............-.............A......T......G................. AP012103.1_Pogonichthys_macrolep .....T............................-...........................G................. AP012106.1_Richardsonius_balteat .....T........T...................-...........................G................. AP012108.1_Notropis_chrosomus_mi .....A........A...................-....................T.....GG.............C... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .....T........A..T..C.............-.............A......T......G................. Pimephales_vigilax_R1S3_________ .....T........A..T..C.............-.............A......T......G................. DQ536429.1_Notropis_stramineus_m .....T........T...................-....................T......G................. JX910141.1_Squaliobarbus_curricu ...........G........C.........................................G................. KC351187.1_Squaliobarbus_curricu ...........G........C.........................................G................. KT278765.1_Pimephales_promelas_m .....T........A..T..C.............-....................T......G................. KT289925.1_Pimephales_promelas_m .....T........A..T..C.............-....................T......G................. KT424924.1_Rhinichthys_osculus_m .....T........A...................-...........................G................. KU200257.1_Chanodichthys_ilishae ................................................C.............G................. MF972070.1_Siphateles_bicolor_mo ..............A...................-...........................G................. MG570407.1_Notropis_chalybaeus_v .....A........A...................-....................T......G................. MG570408.1_Notropis_bifrenatus_v .....T........A...................-....................T......G................. MG570413.1_Notropis_heterolepis_ ..............T...................-....................T......G................. MG570416.1_Rhinichthys_obtusus_v .....T........A...................-...........................G................. MG570417.1_Rhinichthys_obtusus_v .....T........A...................-...........................G................. MG570420.1_Pimephales_notatus_vo .....T........A.....C.............-...........................G................. MG570443.1_Notropis_hudsonius_is .....T........A.....C.............-....................T......G................. MG570444.1_Rhinichthys_atratulus .....T........A...................-...........................G................. MG570445.1_Rhinichthys_atratulus .....T........A...................-...........................G................. MG570447.1_Luxilus_cornutus_isol .....T........A...................-....................T......G................. MG570449.1_Luxilus_cornutus_isol .....T........A...................-....................T......G................. MG570450.1_Pimephales_notatus_is .....T........A.....C.............-...........................G................. MG570451.1_Notropis_bifrenatus_i .....T........A...................-....................T......G................. MG570453.1_Exoglossum_maxillingu .....T........A...................-.................C.........................C. MG570454.1_Pimephales_promelas_i .....T........A..T..C.............-....................T......G................. MG570455.1_Notropis_atherinoides .....T........A.....C.............-...........................G................. MG570456.1_Notropis_atherinoides .....T........A.....C.............-...........................G................. MG570457.1_Pimephales_notatus_is .....T........A.....C.............-...........................G................. MG570458.1_Pimephales_notatus_is .....T........A.....C.............-...........................G................. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .....A........A.....C.............-....................T......G................. MT364325.1_Hybognathus_amarus_mi .....T........A.....C.............-....................T........................ MT501368.1_Gila_cypha_isolate_SN .....T........A..T................-............................................. MT501369.1_Notropis_simus_pecose .....A........A.....C.............-....................T......G................. MT501378.1_Hybognathus_amarus_is .....T........A.....C.............-....................T........................ MT501385.1_Notropis_jemezanus_vo .....A........A.....C.............-...........................G................. MT501391.1_Rhinichthys_osculus_i .....T........A...................-.................-.........G...............C. MT667239.1_Rhinichthys_osculus_t .....T........A...................-.................-.........G...............C. MT667242.1_Luxilus_cornutus_vouc .....T........A...................-....................T......G................. MW300340.1_Hybognathus_placitus_ .....T.....G..A.....C.............-....................T......G................. MW300341.1_Hybognathus_placitus_ .....T.....G..A.....C.............-....................T......G................. NC_013763.1_Mylocheilus_caurinus .....T............................-...........................G................. NC_033926.1_Opsopoeodus_emiliae_ ...........G..A.....C.............-.............-..G..........G.............C... NC_037008.1_Notropis_chalybaeus_ .....A........A...................-....................T......G................. NC_037009.1_Notropis_heterolepis ..............T...................-....................T......G................. NC_037010.1_Rhinichthys_obtusus_ .....T........A...................-...........................G................. NC_037014.1_Notropis_hudsonius_i .....T........A.....C.............-....................T......G................. NC_037015.1_Exoglossum_maxilling .....T........A...................-.................C.........................C. NC_054086.1_Ptychocheilus_lucius .....T........A..T................-............................................. NC_054257.1_Gila_cypha_isolate_S .....T........A..T................-............................................. NC_054259.1_Gila_nigrescens_isol .....T........A..T................-................-..........G................. NC_054260.1_Hybognathus_amarus_i .....T........A.....C.............-....................T........................ NC_054262.1_Notropis_jemezanus_v .....A........A.....C.............-...........................G................. Pimephales_notatus_R2S3_________ .....T........A...................-...............G...........G................. Pimephales_tenellus_tenellu_R2S1 .....T........A.....C.............-....................T......G................. Pimephales_tenellus_parvice_R2S2 .....T........A.....C.............-....................T......G................. Pimephales_notatus_R1S1_________ .....T........A...................-...............G...........G................. MG570452.1_Pimephales_promelas_i .....T........A..T..C.............-....................T......G................. MG570452.1_Pimephales_promelas_S .....T........A..T..C.............-....................T......G................. AB626850.1_Megalobrama_terminali GTCTTGGTTAAACCCCAGGGAAAGATAATGAACCTAATTATAACCATCCTCACCATCACAGTAGCCCTATCCTCAATCCT AP010779.1_Mylocheilus_caurinus_ .............T...A...............T.....TC...T..TT.T..T..T.....C........A.....T.. AP011215.1_Gila_sp._1460_mitocho ........................................C...T...T..G.T..T....C....T....A..C..TT. AP011263.1_Scardinius_erythropht ................................T.......C...T..TT.T.TT..T........T..G..A...G.T.. AP011267.1_Algansea_lacustris_mi ..........G......A...............T......C......TT.TGTT..TG.C........C..A.T...... AP011268.1_Yuriria_alta_mitochon ..........G......A...............T......C...T..TT.T.TT..TG.T........C..G...G.T.. AP011273.1_Hybognathus_nuchalis_ ..........G......A..............AT......C...T..TT.T.TT..TG.T...........A...G.... AP011274.1_Couesius_plumbeus_mit .................................T......C...T..TT.T.....T..G.....TT....A.....T.. AP011275.1_Platygobio_gracilis_m ..........G......A...............T......C...T..TT.TTT...T..TA..........A...G.... AP011277.1_Erimystax_dissimilis_ .................A..............TT......C...T..TT.T..T..T..............A...G.T.. AP011279.1_Pimephales_promelas_m ..........G......A...............T......C...T..TT.T.TT..T..CA..........A...C.A.. AP011280.1_Clinostomus_elongatus .................A...G...........T..........T..TT..G.T..T...A..........A.....T.. AP012079.1_Luxilus_chrysocephalu ..........G......A...............T......C...A..TT.T.TT..TG.TA..........A...G.... AP012080.1_Macrhybopsis_gelida_m .................A..............TT......C...T..T...TTT..TG.T...........A.....TT. AP012083.1_Notropis_atherinoides ............T....A...............T......C...T..TT.T.TT..TG.T........G..A........ AP012084.1_Notropis_baileyi_mito ..........G......A...............T......C...T..TT.T.TT..TG.T...........A...G.... AP012087.1_Cyprinella_galactura_ ..........G......A...............T......C...T..TT.T.TT..T..CAC.AT...G..A...G.A.. AP012088.1_Hybopsis_lineapunctat .................A..............TT....C.C......TT.T.TT..TG.TA..........A........ AP012090.1_Luxilus_cornutus_mito ..........G......A...............T......C...T..TT.T.TT...G.T........C..A..GG.... AP012091.1_Lythrurus_ardens_mito ..........G......A...............T......C...T..TT.T.TT..TG.T...........A........ AP012092.1_Lythrurus_fumeus_mito ..........G......A...............T......C...T..TT.T.TT..TG.TA..........A...G.T.. AP012093.1_Lythrurus_lirus_mitoc ..........G......A...............T......C...T..TT---TT..TG.TA..........A..T..... AP012094.1_Lythrurus_umbratilis_ ..........G......A...............T......C...T..TT.T.TT..TG.T...........A........ AP012095.1_Macrhybopsis_meeki_mi .................A..............TT..........T......TTT..TG.T........T..A...G.T.. AP012097.1_Notropis_bifrenatus_m ..........G......A...............T......C...T..TT.TTTT..T..T.C.........A........ AP012098.1_Pimephales_sp._MCZunc ............T....A...............T......C...T..TT.T.TT..TG.T........G..A...G.A.. AP012100.1_Notropis_telescopus_m ..........G......A...............T......C...T..TT.T.TT..TG.T...........A...G.T.. AP012101.1_Pimephales_notatus_mi ............T....A...............T......C...T..TT.T.TT..T..T..G.....G..A...G.A.. AP012102.1_Pimephales_vigilax_mi .................A...............T...C...G..T.......TT..T..TA..........A...G.A.. AP012103.1_Pogonichthys_macrolep .............T...A...............T.....TC...T..TT.T..T..T...A.C........A.....T.. AP012106.1_Richardsonius_balteat .................A...............T......C...TG.TT.T..T..T..GA.G.....G..A.....TT. AP012108.1_Notropis_chrosomus_mi .................A...............T......C...T..TT.T.TT..TG.T........G..A...G.T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .................A...............T...C...G..T.......TT..T..TA..........A...G.A.. Pimephales_vigilax_R1S3_________ .................A...............T...C...G..T.......TT..T..TA..........A...G.A.. DQ536429.1_Notropis_stramineus_m ..........G......A...............T......C...T...T.T.TT..TG.T.....A.....G..GG.T.. JX910141.1_Squaliobarbus_curricu ................................T.....C.C...T......G.T.....C..G................. KC351187.1_Squaliobarbus_curricu ................................T.....C.C...T......G.T.....C..G................. KT278765.1_Pimephales_promelas_m ..........G......A...............T..........T..TT.T.TT..TG.T........G..A...G.A.. KT289925.1_Pimephales_promelas_m ..........G......A...............T......C...T..TT.T.TT..T..CA.G........A...G.A.. KT424924.1_Rhinichthys_osculus_m ..........G......A..............TT......C...T...T.T..T..T..............A.T.G.T.. KU200257.1_Chanodichthys_ilishae .................................T..........T..T..T.........A................... MF972070.1_Siphateles_bicolor_mo ............T....A...G..................C...T...T..G.T.......C.........A.....T.. MG570407.1_Notropis_chalybaeus_v .................A...............T......C...T..TT.T.TT..TG.T...........A........ MG570408.1_Notropis_bifrenatus_v ..........G......A...............T......C...T..TT.TTTT..T..T.C.........A........ MG570413.1_Notropis_heterolepis_ ..........G......A...............T......C...T..TT.T.TT..TG.T...........G...G.... MG570416.1_Rhinichthys_obtusus_v ............T....A..............TT.....GC...T...T.T..T......A.......G..A...G.T.. MG570417.1_Rhinichthys_obtusus_v ............T....A..............TT.....GC...T...T.T..T......A.......G..A...G.T.. MG570420.1_Pimephales_notatus_vo ............T....A...............T......C...T..TT.T.TT..TG.T........G..A...G.A.. MG570443.1_Notropis_hudsonius_is ..........G......A...............T....C.C...T..TT.T.TT..TG.T...A.......G...G.... MG570444.1_Rhinichthys_atratulus ..........G......A..............TT......C...T..TT.T..T.....G...........A.....T.. MG570445.1_Rhinichthys_atratulus ..........G......A..............TT......C...T..TT.T..T.....G...........A.....T.. MG570447.1_Luxilus_cornutus_isol ..........G......A...............T......C...T..TT.T.TT...G.T........C..A..GG.... MG570449.1_Luxilus_cornutus_isol ..........G......A...............T......C...T..TT.T.TT...G.T........C..A..GG.... MG570450.1_Pimephales_notatus_is ............T....A...............T......C...T..TT.T.TT..TG.T........G..A...G.A.. MG570451.1_Notropis_bifrenatus_i ..........G......A...............T......C...T..TT.TTTT..T..T.C.........A........ MG570453.1_Exoglossum_maxillingu .................A..............TT......C...T..TT.T..T..T..............A...G.T.. MG570454.1_Pimephales_promelas_i ..........G......A...............T......C...T..TT.T.TT..T..CA.G........A...G.A.. MG570455.1_Notropis_atherinoides ............T....A...............T......C...T..TT.T.TT..TG.T........G..A........ MG570456.1_Notropis_atherinoides ............T....A...............T......C...T..TT.T.TT..TG.T........G..A........ MG570457.1_Pimephales_notatus_is ............T....A...............T......C...T..TT.T.TT..TG.T........G..A...G.A.. MG570458.1_Pimephales_notatus_is ............T....A...............T......C...T..TT.T.TT..TG.T........G..A...G.A.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..........G......A...............T..G...C...G..TT...TT..TG.C...A.......A...G.... MT364325.1_Hybognathus_amarus_mi ..........G......A...............T......C...T..TT.T.TT..TG.T.....T.....A...G.... MT501368.1_Gila_cypha_isolate_SN .................A..............T.......C...T...T..G.T..T....C....T....A..G..TT. MT501369.1_Notropis_simus_pecose ..........G......A...............T......C...T..TT.T.TT..TG.T...........A..GG.T.. MT501378.1_Hybognathus_amarus_is ..........G......A...............T......C...T..TT.T.TT..TG.T.....T.....A...G.... MT501385.1_Notropis_jemezanus_vo ............T....A...............T......C...T..TT.T.TT..TG.C......T....A...G.... MT501391.1_Rhinichthys_osculus_i .................A..............TT......C...T...T.T..T........G.T...G..A...G.T.. MT667239.1_Rhinichthys_osculus_t .................A...............T......C...T.....T..T........G.....G..A...G.T.. MT667242.1_Luxilus_cornutus_vouc ..........G......A...............T......C...T..TT.T.TT...G.T........C..A..GG.... MW300340.1_Hybognathus_placitus_ ..........G......A...............T......C...T..TT.T.TT...G.T...........A...G.... MW300341.1_Hybognathus_placitus_ ..........G......A...............T......C...T..TT.T.TT...G.T...........A...G.... NC_013763.1_Mylocheilus_caurinus .............T...A...............T.....TC...T..TT.T..T..T.....C........A.....T.. NC_033926.1_Opsopoeodus_emiliae_ A................A...G...........T......C...AG.TT.T.TT..TG.TA..A....C..A.TTG.A.. NC_037008.1_Notropis_chalybaeus_ .................A...............T......C...T..TT.T.TT..TG.T...........A........ NC_037009.1_Notropis_heterolepis ..........G......A...............T......C...T..TT.T.TT..TG.T...........G...G.... NC_037010.1_Rhinichthys_obtusus_ ............T....A..............TT.....GC...T...T.T..T......A.......G..A...G.T.. NC_037014.1_Notropis_hudsonius_i ..........G......A...............T....C.C...T..TT.T.TT..TG.T...A.......G...G.... NC_037015.1_Exoglossum_maxilling .................A..............TT......C...T..TT.T..T..T..............A...G.T.. NC_054086.1_Ptychocheilus_lucius ............T........G..................C...T...T..G....T....C....T....A.....TT. NC_054257.1_Gila_cypha_isolate_S .................A..............T.......C...T...T..G.T..T....C....T....A..G..TT. NC_054259.1_Gila_nigrescens_isol ............T...................T.......C...T...T..G.T..T....C....T....G..C..TT. NC_054260.1_Hybognathus_amarus_i ..........G......A...............T......C...T..TT.T.TT..TG.T.....T.....A...G.... NC_054262.1_Notropis_jemezanus_v ............T....A...............T......C...T..TT.T.TT..TG.C......T....A...G.... Pimephales_notatus_R2S3_________ ..........G......A...............T......C...T..TT.T.T...TG.T........G..G...G.A.. Pimephales_tenellus_tenellu_R2S1 ..........G......A...............T......C...T..TT.T.TT..TG.T...A..T....A...G.A.. Pimephales_tenellus_parvice_R2S2 ..........G......A...............T......C...T..TT.T.TT..TG.T...A.......A...G.A.. Pimephales_notatus_R1S1_________ ..........G......A...............T......C...T..TT.T.T...TG.T........G..G...G.A.. MG570452.1_Pimephales_promelas_i ..........G......A...............T......C...T..TT.T.TT..T..CA.G........A...G.A.. MG570452.1_Pimephales_promelas_S ..........G......A...............T......C...T..TT.T.TT..T..CA..A.......A...C.A.. AB626850.1_Megalobrama_terminali AGCAATCGTATCCTTCTGACTACCACAAATAAATCCGGACGCAGAAAAACTATCTCCCTATGAGTGTGGATTCGACCCAC AP010779.1_Mylocheilus_caurinus_ ......T..............G........G..C..............G..C..C...........C.....T.....G. AP011215.1_Gila_sp._1460_mitocho ....G.T.....T...........G........C..A........G.....C..G........A..C..C..T..T.... AP011263.1_Scardinius_erythropht ...GG.A..G.....T...T..........G.....A..T.....G..G..C..C...........C.....T......T AP011267.1_Algansea_lacustris_mi G.....T.....T......T....G..G..G..C..A........G.....C..C..T.....A........T....... AP011268.1_Yuriria_alta_mitochon G.....T.....T......T.......G.....C..A..T...........C..C........A.....G.......... AP011273.1_Hybognathus_nuchalis_ G........G..T..T...T.............C..T..T.....G..G..C..C.....C..A........T......T AP011274.1_Couesius_plumbeus_mit G....................G..G...........A..............G.....T.....A..C.....T......T AP011275.1_Platygobio_gracilis_m ......T.....T......T....G..G.....C........G..G.....C..C...........C.....T..T..CT AP011277.1_Erimystax_dissimilis_ G.....T..C..T......T.............C..A..T.....G.....C..C..T........C..G..T.....G. AP011279.1_Pimephales_promelas_m ......T.....T...........G..G.....C..............G.....C..T..C.....C.....T..T.... AP011280.1_Clinostomus_elongatus ......T.................C........C...........G.....C..C..T.....A........T....... AP012079.1_Luxilus_chrysocephalu G.....T.....T......T.G..T...........A..T........G..C..C........A..C.....T....... AP012080.1_Macrhybopsis_gelida_m ......T.....T..T...T...................T...........C..C..T........C..C.........T AP012083.1_Notropis_atherinoides ......T.....T.....G..G..G.....G..C..A..T..G.....G..C..C........A..C..G.....T..G. AP012084.1_Notropis_baileyi_mito ......T.....T..............G..G..C..A..T........G..C.....T..C..A..C.....T..T...T AP012087.1_Cyprinella_galactura_ ....C....G.....T.....C..C........C..T..T.........T.G..C...........C.....T......T AP012088.1_Hybopsis_lineapunctat G...G.T.....T......T.............C...........G..G..C...........A..C.....T....... AP012090.1_Luxilus_cornutus_mito ......T.....T......T....C........C..A..T.....G..G..C..C...........C..G..T....... AP012091.1_Lythrurus_ardens_mito G.....T.....T......T.G........G..C..A..T..G..G..G..C..C..T.....A..C.....T....... AP012092.1_Lythrurus_fumeus_mito G.....T.....T......T................A..T........G..C..C..T.....A.....G..T.....GT AP012093.1_Lythrurus_lirus_mitoc G.....T.....T......T.G..G.....G..C..A..T..G..G.....C..C..T.....A..C.....T......T AP012094.1_Lythrurus_umbratilis_ G.....T.....T......T.G........G..C..A..T..G..G..G..C..C..T.....A..C.....T....... AP012095.1_Macrhybopsis_meeki_mi ............T.....G..G.....G...........T...........C..C..T...........C..T......T AP012097.1_Notropis_bifrenatus_m G.....T.....T..T...T..........G..C.....T........G..C..C...........C.....T......T AP012098.1_Pimephales_sp._MCZunc ......T.....T......T..........G.....A..T...........C..C..T.....A..C..G..T......T AP012100.1_Notropis_telescopus_m G.....T.....T......T.......G.....C..A...........G..C.....T........C..G..T......T AP012101.1_Pimephales_notatus_mi ......T.....T.................G.....A..T..G........C..C........A..C..G..T......T AP012102.1_Pimephales_vigilax_mi ......T..G..G..T................GC..A..T........G..C..C..T..C........C..T..T...T AP012103.1_Pogonichthys_macrolep ......T..G...........G........G..C........G........C..C...........C.....T..T..G. AP012106.1_Richardsonius_balteat ......T............T.G..C.....G..C..A........G..G..C..C.....C..A..C.....T..T...T AP012108.1_Notropis_chrosomus_mi ..............................G..C..A..T........G..C..C........A..C.....T......T AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ......T..G..G..T................GC..A..T........G..C..C..T..C........C..T..T...T Pimephales_vigilax_R1S3_________ ......T..G..G..T................GC..A..T........G..C..C..T..C........C..T..T...T DQ536429.1_Notropis_stramineus_m G........G.........T.G........G..C.....T.....G.....C...........A..C..G..T.....G. JX910141.1_Squaliobarbus_curricu G........G..T........G.....G..G..C..A..T..............C........A........T..T..T. KC351187.1_Squaliobarbus_curricu G........G..T........G.....G..G..C..A..T..............C........A........T..T..T. KT278765.1_Pimephales_promelas_m ......T.....T...........G........C..............G.....C..T..C.....C..G..T....... KT289925.1_Pimephales_promelas_m ......T.....T...........G..G.....C..............G.....C..T..C...........T..T.... KT424924.1_Rhinichthys_osculus_m G.....T.....T......T....G.....G..C..............G..C..C........A..C.....T....... KU200257.1_Chanodichthys_ilishae G...........T........G..G........C..A..........................A..C............. MF972070.1_Siphateles_bicolor_mo ....G.......T.....G..G...........C..A...........G..C..A.....C.....C..C..T..T.... MG570407.1_Notropis_chalybaeus_v ......T.....T....................C..A...........G..C..C..T........C.....T.....G. MG570408.1_Notropis_bifrenatus_v G.....T.....T..T...T..........G..C.....T........G..C..C.................T......T MG570413.1_Notropis_heterolepis_ ......T..C..T.....G..G...........C..A..T........G..C..............C.....T..T.... MG570416.1_Rhinichthys_obtusus_v G.....T.....T........G..G..G.....C..A...........G..T..C..T.....A..C.....T..T.... MG570417.1_Rhinichthys_obtusus_v G.....T.....T........G..G..G.....C..A...........G..T..C..T.....A..C.....T..T.... MG570420.1_Pimephales_notatus_vo ......T.....T......T..........G.....A..T...........C..C..T.....A..C..G..T......T MG570443.1_Notropis_hudsonius_is G.....T.....T.....GT.............C..A..T..G..G.....C..C........A..C.....T.....GT MG570444.1_Rhinichthys_atratulus G...C.T.....T........G........G..C..A...........G..T..C..T........C..G.....T.... MG570445.1_Rhinichthys_atratulus G...C.T.....T........G........G..C..A...........G..T..C..T........C..G.....T.... MG570447.1_Luxilus_cornutus_isol G.....T.....T......T....C........C..A..T........G..C..C...........C..G..T....... MG570449.1_Luxilus_cornutus_isol G.....T.....T......T....C........C..A..T........G..C..C...........C..G..T....... MG570450.1_Pimephales_notatus_is ......T.....T......T..........G.....A..T...........C..C..T.....A..C..G..T......T MG570451.1_Notropis_bifrenatus_i G.....T.....T..T...T..........G..C.....T........G..C..C...........C.....T......T MG570453.1_Exoglossum_maxillingu G.....T..C..T......T.............C..A..T.....G.....C..C..T........C..G..T.....G. MG570454.1_Pimephales_promelas_i ......T.....T...........G..G.....C..............G.....C..T..C.....C.....T..T.... MG570455.1_Notropis_atherinoides ......T.....T.....G..G..G.....G..C..A..T..G.....G..C..C........A..C..G.....T.... MG570456.1_Notropis_atherinoides ......T.....T.....G..G..G.....G..C..A..T..G.....G..C..C........A..C..G.....T..G. MG570457.1_Pimephales_notatus_is ......T.....T......T..........G.....A..T...........C..C..T.....A..C..G..T......T MG570458.1_Pimephales_notatus_is ......T.....T......T..........G.....A..T...........C..C..T.....A..C..G..T......T MK421554.1_Parabramis_pekinensis ....G........................................................................... MT333789.1_Notropis_lutipinnis_v ......T............T....G.....G..C.....T.....G.....C..C.....C..A..C.....T....... MT364325.1_Hybognathus_amarus_mi G........G..T..T...T.............C..C..T........G..C..C.....C..A.....G..T......T MT501368.1_Gila_cypha_isolate_SN ....G.T.....T.....G..G...........C..A........G.....C..G........A..C..C..T..T...T MT501369.1_Notropis_simus_pecose ...G.....G..T..T...T.G.....G..G..C..A..T........G..T..C..T..C.....C.....T.....GT MT501378.1_Hybognathus_amarus_is G........G..T..T...T.............C..C..T........G..C..C.....C..A.....G..T......T MT501385.1_Notropis_jemezanus_vo ......T.....T.....G..G..C.....G..C.....T........G..C..C........A..C..G..T..T.... MT501391.1_Rhinichthys_osculus_i G.....T.....T...........G........C..A.....G.....G..C..C........A..C.....T....... MT667239.1_Rhinichthys_osculus_t G.....T.....T...........G........C..A.....G.....G..C..C........A..C.....T....... MT667242.1_Luxilus_cornutus_vouc G.....T.....T......T....C........C..A..T........G..C..C...........C..G..T....... MW300340.1_Hybognathus_placitus_ G...........T..T..G..G..G...........C..T...........C..C.....C..A..C..T..T......T MW300341.1_Hybognathus_placitus_ G...........T..T..G..G..G...........C..T..G........C..C.....C..A..C..T..T......T NC_013763.1_Mylocheilus_caurinus ......T..............G........G..C..............G..C..C...........C.....T.....G. NC_033926.1_Opsopoeodus_emiliae_ ......T.....T......T........T....C.....T...........C..C..T..C..A..C..T..T.....CT NC_037008.1_Notropis_chalybaeus_ ......T.....T....................C..A...........G..C..C..T........C.....T.....G. NC_037009.1_Notropis_heterolepis ......T..C..T.....G..G...........C..A..T........G..C..............C.....T..T.... NC_037010.1_Rhinichthys_obtusus_ G.....T.....T........G..G..G.....C..A...........G..T..C..T.....A..C.....T..T.... NC_037014.1_Notropis_hudsonius_i G.....T.....T.....GT.............C..A..T..G..G.....C..C........A..C.....T.....GT NC_037015.1_Exoglossum_maxilling G.....T..C..T......T.............C..A..T.....G.....C..C..T........C..G..T.....G. NC_054086.1_Ptychocheilus_lucius ...GG.T.....T........G........G..C..A........G.....C..G.....C..A..C..C..T..T...T NC_054257.1_Gila_cypha_isolate_S ....G.T.....T.....G..G...........C..A........G.....C..G........A..C..C..T..T...T NC_054259.1_Gila_nigrescens_isol ....G.T.....T.....G..G..............A........G.....C..G..G..C..A..C..C..T..T.... NC_054260.1_Hybognathus_amarus_i G........G..T..T...T.............C..C..T........G..C..C.....C..A.....G..T..T...T NC_054262.1_Notropis_jemezanus_v ......T.....T.....G..G..C.....G..C.....T.....G..G..C..C........A..C..G..T..T.... Pimephales_notatus_R2S3_________ ......T..G..T.......................A........G.....C..C........A........T..T.... Pimephales_tenellus_tenellu_R2S1 ......T.....T.....G........G.....C..A..T.....G.....C..C........A..C.....T..T.... Pimephales_tenellus_parvice_R2S2 ......T..G..T.....G........G.....C..A..T.....G.....C..C........A..C.....T....... Pimephales_notatus_R1S1_________ ......T..G..T.......................A........G.....C..C........A........T..T.... MG570452.1_Pimephales_promelas_i ......T.....T...........G..G.....C..............G.....C..T..C.....C.....T..T.... MG570452.1_Pimephales_promelas_S ......T.....T...........G..G.....C..............G.....C..T..C.....C.....T..T.... AB626850.1_Megalobrama_terminali TTGGATCCGCCCGACTACCCTTCTCATTACGATTCTTCCTAGTAGCAATCCTATTCCTCCTATTTGACCTAGAAATTGCC AP010779.1_Mylocheilus_caurinus_ .G..G.........T..........CC...........T..........T........TT.................... AP011215.1_Gila_sp._1460_mitocho .A............T....T......C..........TT....G.....T.........T........T..........T AP011263.1_Scardinius_erythropht .A.....T...........T.....TC.T.........T..........TT........T.G........G......... AP011267.1_Algansea_lacustris_mi .A..G..T......T..........C..G........TT..........T..G...........C...T........... AP011268.1_Yuriria_alta_mitochon .A.....A......T....A.....C...........T...........T........TT.G.....T............ AP011273.1_Hybognathus_nuchalis_ .A..C..A........T..A.....C...........T...........T..T.....TT.......T..T..G...... AP011274.1_Couesius_plumbeus_mit .A.....T..............T..CC...........T................T..TT.G.....T...........T AP011275.1_Platygobio_gracilis_m .A.....T......T....A.....CC.G.........T..........T..G.....TT.......T..G......... AP011277.1_Erimystax_dissimilis_ .A.....T........G........CC.............G.................TT.................... AP011279.1_Pimephales_promelas_m .A..T..A......T....A.....C...........T...........T........T.....C............... AP011280.1_Clinostomus_elongatus .A.......................CC.......T...T.G........T..C.....TT.......TT........... AP012079.1_Luxilus_chrysocephalu .A.....A.....C.....A......C..........TT..........T........TT.......T...........T AP012080.1_Macrhybopsis_gelida_m .A.....T......T....A..T..CC...........T..........TT.......AT....C..TT........... AP012083.1_Notropis_atherinoides .A.....A...........A.....C.....G..T..T........T..TT.G.....TT.G..C............... AP012084.1_Notropis_baileyi_mito .A.....A...........A..T..CC..........TT..........T..G......T.G......T........... AP012087.1_Cyprinella_galactura_ .A..C..A......T....A........G..G.................T..T..T...T.................... AP012088.1_Hybopsis_lineapunctat .A.....A..T.....T..A.....C..G........TT..........T........TT.G..C............... AP012090.1_Luxilus_cornutus_mito .G..G..A.....C.....A.....C...........TT.G..G.....T........TT..........C......... AP012091.1_Lythrurus_ardens_mito .A.....A...........G.....CC.......T..T..G..............T..TT.G.................. AP012092.1_Lythrurus_fumeus_mito .A.....A......T....A.....C..G.....T..T.................T..TT.................... AP012093.1_Lythrurus_lirus_mitoc .A.....A...........A..T..CC.......T..T..G..............T..TT.G.................. AP012094.1_Lythrurus_umbratilis_ .A.....A...........G.....CC.......T..T..G..............T..TT.G.................. AP012095.1_Macrhybopsis_meeki_mi .A.....T......T....A..T..CC......................TT........T.......T...........A AP012097.1_Notropis_bifrenatus_m .A..G.........T....A.....T..G........T..G.....T..T..T........................... AP012098.1_Pimephales_sp._MCZunc .A..G..A...........A.....C........T..T...........T........TT.................... AP012100.1_Notropis_telescopus_m .G.....A.....C..C..A.....C..G........TT..........T..T.....TT.......T............ AP012101.1_Pimephales_notatus_mi .A.....A......T....A..............T..T...........T........TT.................... AP012102.1_Pimephales_vigilax_mi .A.....A.....GT....A.....T........T.................G......T.......TT........... AP012103.1_Pogonichthys_macrolep .A..G..T...........T.....CC....G.....TT.G..............T..TT.................... AP012106.1_Richardsonius_balteat .A.....T......T..........CC...........T..........T..G.....TT.................... AP012108.1_Notropis_chrosomus_mi .G.....A......T....A..T..C..G........TT..........T..G.....TT.G.................. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .A.....A.....GT....A.....T........T.................G......T.......TT........... Pimephales_vigilax_R1S3_________ .A.....A.....GT....A.....T........T.................G......T.......TT........... DQ536429.1_Notropis_stramineus_m .A.....A.....GT....A.....CC.T........T........T..T..T.....T..G...........G...... JX910141.1_Squaliobarbus_curricu .A.....T..................C.............G.................T.....C............... KC351187.1_Squaliobarbus_curricu .A.....T..................C.............G.................T.....C............... KT278765.1_Pimephales_promelas_m .G..T..A......T....A.....C...........T...........T........T..............G...... KT289925.1_Pimephales_promelas_m .A..T..A......T....A.....C...........T...........T........T.....C............... KT424924.1_Rhinichthys_osculus_m .A..G..T.................CC......................T..G.....TT.......T............ KU200257.1_Chanodichthys_ilishae .A..G........G..G.....T......................................................... MF972070.1_Siphateles_bicolor_mo .A............T....T......C...........T...................TT........T........... MG570407.1_Notropis_chalybaeus_v .A.....A......T....A..T..C..G........T....................TT.......T............ MG570408.1_Notropis_bifrenatus_v .A..G.........T....A.....T..G........T..G.....T..T..T........................... MG570413.1_Notropis_heterolepis_ .A.....A...........A.....C..G........TT..........T..G.....TT.G..C..TT........... MG570416.1_Rhinichthys_obtusus_v .A.....T......T.G........C.......................T..G.....TT.............G...... MG570417.1_Rhinichthys_obtusus_v .A.....T......T.G........C.......................T..G.....TT.............G...... MG570420.1_Pimephales_notatus_vo .A..G..A...........A.....C........T..T...........T........TT.................... MG570443.1_Notropis_hudsonius_is .A.....T......T....A..T..TC..........TT.G...........G.....TT.G.....T............ MG570444.1_Rhinichthys_atratulus .A.....T.....CT.G........C.......................T..G.....TT.......T.....G...... MG570445.1_Rhinichthys_atratulus .A.....T.....CT.G........C.......................T..G.....TT.......T.....G...... MG570447.1_Luxilus_cornutus_isol .A.....A.....C.....A.....C...........TT.G........T........TT.......T..C......... MG570449.1_Luxilus_cornutus_isol .A.....A.....C.....A.....C...........TT.G........T........TT.......T..C......... MG570450.1_Pimephales_notatus_is .A..G..A...........A.....C........T..T...........T........TT.................... MG570451.1_Notropis_bifrenatus_i .A..G.........T....A.....T..G........T..G.....T..T..T........................... MG570453.1_Exoglossum_maxillingu .A.....T........G........CC.............G.................TT.................... MG570454.1_Pimephales_promelas_i .A..T..A......T....A.....C...........T...........T........T.....C............... MG570455.1_Notropis_atherinoides .A.....A...........A.....C.....G..T..T........T..TT.G.....TT.G..C............... MG570456.1_Notropis_atherinoides .A.....A...........A.....C.....G..T..T........T..TT.G.....TT.G..C............... MG570457.1_Pimephales_notatus_is .A..G..A...........A.....C........T..T...........T........TT.................... MG570458.1_Pimephales_notatus_is .A..G..A...........A.....C........T..T...........T........TT.................... MK421554.1_Parabramis_pekinensis ..................................T............................................. MT333789.1_Notropis_lutipinnis_v .A.....A......T....A..T..CC..........TT....G.....T.........T.................... MT364325.1_Hybognathus_amarus_mi .A..C..A........T..A.....C...........TT..........T..T.....TT.......T..T..G...... MT501368.1_Gila_cypha_isolate_SN .A............T....T......C..........T.....G.....T..G......T........T..........T MT501369.1_Notropis_simus_pecose .G..G..A........G..A..T..C...........TT.G..G........G.....AT.G..............C... MT501378.1_Hybognathus_amarus_is .A..C..A........T..A.....C...........TT..........T..T.....TT.......T..T..G...... MT501385.1_Notropis_jemezanus_vo .A.....A..T........A.....C..G..G..T..T..G.....T..TT.......TT.......T............ MT501391.1_Rhinichthys_osculus_i .A..G..T........G........CC.............G........T........T.........T..........T MT667239.1_Rhinichthys_osculus_t .A..G..T........G........CC.............G..G.....T........T.........T..........T MT667242.1_Luxilus_cornutus_vouc .A.....A.....C.....A.....C...........TT.G........T........TT.......T..C......... MW300340.1_Hybognathus_placitus_ .A.....G...........A.....C..G........T...........T..G......T.G.....T............ MW300341.1_Hybognathus_placitus_ .A.....G...........A.....C..G........T...........T..G......T.G.....T............ NC_013763.1_Mylocheilus_caurinus .G..G.........T..........CC...........T..........T........TT.................... NC_033926.1_Opsopoeodus_emiliae_ .A..G..A.....C.....G.....CC..........TT..........TT.......TT....C..T............ NC_037008.1_Notropis_chalybaeus_ .A.....A......T....A..T..C..G........T....................TT.......T............ NC_037009.1_Notropis_heterolepis .A.....A...........A.....C..G........TT..........T..G.....TT.G..C..TT........... NC_037010.1_Rhinichthys_obtusus_ .A.....T......T.G........C.......................T..G.....TT.............G...... NC_037014.1_Notropis_hudsonius_i .A.....T......T....A..T..TC..........TT.G...........G.....TT.G.....T............ NC_037015.1_Exoglossum_maxilling .A.....T........G........CC.............G.................TT.................... NC_054086.1_Ptychocheilus_lucius .A............T....T......C..........T.....G.....T..G......T...................T NC_054257.1_Gila_cypha_isolate_S .A............T....T......C..........T.....G.....T..G......T........T..........T NC_054259.1_Gila_nigrescens_isol .A..C..............T.....GC..........TT....G.....T.........T........T.G........T NC_054260.1_Hybognathus_amarus_i .A..C..A........T..A.....C...........TT..........T..T.....TT.......T..T..G...... NC_054262.1_Notropis_jemezanus_v .A.....A..T........A.....C..G..G..T..T..G.....T..TT.......TT.......T............ Pimephales_notatus_R2S3_________ .A.....A.....G.....A.....C...........T...........TT............................. Pimephales_tenellus_tenellu_R2S1 .A.....A..T...T....A.....C........T..T..C........T........T.........T........... Pimephales_tenellus_parvice_R2S2 .A.....A..T...T....A.....C........T..T..G........T........T.........T........... Pimephales_notatus_R1S1_________ .A.....A.....G.....A.....C...........T...........TT............................. MG570452.1_Pimephales_promelas_i .A..T..A......T....A.....C...........T...........T........T.....C............... MG570452.1_Pimephales_promelas_S .A..T..A......T....A.....C...........T...........T........T.....C............... AB626850.1_Megalobrama_terminali CTCCTCCTCCCCCTACCGTGAGGAGATCAACTCCACAACCCCACCGGAACATTCTTTTGAGCCACTACAGTCCTAATCTT AP010779.1_Mylocheilus_caurinus_ .................C.....C.....G...........A....................T..C...........AC. AP011215.1_Gila_sp._1460_mitocho ........T.....G..T.....C.................A....................T........T..GG.TC. AP011263.1_Scardinius_erythropht ........T..T.....C..............T..T.G...A....C.........C.....T...G.C.....G..AC. AP011267.1_Algansea_lacustris_mi ...........A.....A.....G...........T.G...A..............C..G.....C........G...C. AP011268.1_Yuriria_alta_mitochon ...........A.....A.....G..C..........G...A..............C..G..T..C......T....TC. AP011273.1_Hybognathus_nuchalis_ .....T.....A.....A.....G..C..........G...A.......................C........T...C. AP011274.1_Couesius_plumbeus_mit ..T..A........G..T..G..............T.....A..............C....................AC. AP011275.1_Platygobio_gracilis_m ...........A.....A........C..........GT..AG................G..................C. AP011277.1_Erimystax_dissimilis_ .....................................G.......................................GC. AP011279.1_Pimephales_promelas_m ...........G.....A.....G..C.....T..T.G...A.....G.....T...........C.........G..C. AP011280.1_Clinostomus_elongatus ............T....C.....T.............G...A..........................G..T.....AC. AP012079.1_Luxilus_chrysocephalu .....A.....A...........C...........T.G...AG...................................C. AP012080.1_Macrhybopsis_gelida_m ...........AT....A..............A..T.....A..T.A............G..TG.C........G...C. AP012083.1_Notropis_atherinoides .....T.....A..C..A.....G..C..........G...A.....G.................C........G..... AP012084.1_Notropis_baileyi_mito ..T........G.....A..G..G..C..........G...A.......................C..T.....G..... AP012087.1_Cyprinella_galactura_ ........T..A.....A.....G.............G...A.....G.................C............C. AP012088.1_Hybopsis_lineapunctat ...........A.....A.....T...........T.G...A..............C..C..T..C.....A......C. AP012090.1_Luxilus_cornutus_mito .....A.....A.....C...................G...AG......................C............C. AP012091.1_Lythrurus_ardens_mito .....T.....AT....A.................T.G...A.................G.....C......T.....C. AP012092.1_Lythrurus_fumeus_mito .....T.....A..G..A.................T.G...A.......................C.....TT.....C. AP012093.1_Lythrurus_lirus_mitoc .....T..A..T.....A.....G...........T.G...A.................G.....C......T.....C. AP012094.1_Lythrurus_umbratilis_ .....T.....AT....A.................T.G...A.................G.....C......T.....C. AP012095.1_Macrhybopsis_meeki_mi ...........AT....A.....G...........T.G...G..T.A....C..........TG..............C. AP012097.1_Notropis_bifrenatus_m ...........G..G..A.....G.............G...A..............C..G........G.........C. AP012098.1_Pimephales_sp._MCZunc ..T........AT....A...................G...A...........T........T..............TC. AP012100.1_Notropis_telescopus_m .....T..T..A.....A........C..........G...A..T....................C.....T......C. AP012101.1_Pimephales_notatus_mi ..T........AT........................G...A...........T........T..............TC. AP012102.1_Pimephales_vigilax_mi ........T..TT....A.....T...........T.....A...........T......A.TG..............C. AP012103.1_Pogonichthys_macrolep .................T.....C..C..G.......G...A....A................G.C.........G.AC. AP012106.1_Richardsonius_balteat .................T.....T...........T.G...TG............................G.....AC. AP012108.1_Notropis_chrosomus_mi ..T........A.........................G...A..T....................C..C.........C. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ........T..TT....A.....T...........T.....A...........T......A.TG..............C. Pimephales_vigilax_R1S3_________ ........T..TT....A.....T...........T.....A...........T......A.TG..............C. DQ536429.1_Notropis_stramineus_m ...........A..G..A.....C........T....G...A.....G.................C.....T......C. JX910141.1_Squaliobarbus_curricu ........T........C..........................T....................C............C. KC351187.1_Squaliobarbus_curricu ........T........C..........................T....................C............C. KT278765.1_Pimephales_promelas_m ...........G.....A.....C..C.....T..T.G...A.....G.................C............C. KT289925.1_Pimephales_promelas_m ...........G.....A.....G..C.....T..T.G...A.....G.....T...........C.........G..C. KT424924.1_Rhinichthys_osculus_m ..T.....T........C..............T..T..T..A...AC..................C...........AC. KU200257.1_Chanodichthys_ilishae .......C.........A.................T....................C....................TC. MF972070.1_Siphateles_bicolor_mo .....T..T.....G..T........C..............A.......................C.....T..G..TC. MG570407.1_Notropis_chalybaeus_v ..T........A.....A..............T....G...A.......................C..C.........C. MG570408.1_Notropis_bifrenatus_v ...........G..G..A.....G.............G...A..............C..G........G.........C. MG570413.1_Notropis_heterolepis_ ...........AT....A..G................G...A....................T..C.....T......C. MG570416.1_Rhinichthys_obtusus_v ..T.....T........T...................G...G..............C........C...........AC. MG570417.1_Rhinichthys_obtusus_v ..T.....T........T...................G...G..............C........C...........AC. MG570420.1_Pimephales_notatus_vo ..T........AT....A...................G...A...........T........T..............TC. MG570443.1_Notropis_hudsonius_is ...........A.....C.....G.....G.......G...AG......................C............C. MG570444.1_Rhinichthys_atratulus ..T.....T........C.....C.....G.....T.....A..............C........C...........AC. MG570445.1_Rhinichthys_atratulus ..T.....T........C.....C.....G.....T.....A..............C........C...........AC. MG570447.1_Luxilus_cornutus_isol .....A.....A.....A...................G...AG......................C............C. MG570449.1_Luxilus_cornutus_isol .....A.....A.....A...................G...AG......................C............C. MG570450.1_Pimephales_notatus_is ..T........AT....A...................G...A...........T........T..............TC. MG570451.1_Notropis_bifrenatus_i ...........G..G..A.....G.............G...A.................G........G.........C. MG570453.1_Exoglossum_maxillingu .....................................G.......................................GC. MG570454.1_Pimephales_promelas_i ...........G.....A.....G..C.....T..T.G...A.....G.....T...........C.........G..C. MG570455.1_Notropis_atherinoides .....T.....A..C..A.....G..C..........G...A.....G.................C........G..... MG570456.1_Notropis_atherinoides .....T.....A..C..A.....G..C..........G...A.....G.................C........G..... MG570457.1_Pimephales_notatus_is ..T........AT....A...................G...A...........T........T..............TC. MG570458.1_Pimephales_notatus_is ..T........AT....A...................G...A...........T........T..............TC. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..T.....T..A.....A...................G...A..T.C..................C..C.....G..T.. MT364325.1_Hybognathus_amarus_mi .....T.....A.....A.....G..C..G.......G...A.......................C..G.........C. MT501368.1_Gila_cypha_isolate_SN ........T.....G..T.....C.....G...........A....................T..C.....T.....TC. MT501369.1_Notropis_simus_pecose ..T.....T..A..G..A.....G.............G...A.................G.....C..C........... MT501378.1_Hybognathus_amarus_is .....T.....A.....A.....G..C..G.......G...A.......................C..G.........C. MT501385.1_Notropis_jemezanus_vo .....T.....A..C..A..G..G..C..G.......G...A.....G.................C............C. MT501391.1_Rhinichthys_osculus_i ..T.....T........C..............T....G...A...................................AC. MT667239.1_Rhinichthys_osculus_t ..T.....T........C..............T....G...A...................................AC. MT667242.1_Luxilus_cornutus_vouc .....A.....A.....A...................G...AG......................C............C. MW300340.1_Hybognathus_placitus_ ...........A.....A...................G...A.......................C........G...C. MW300341.1_Hybognathus_placitus_ ...........A.....A...................G...A.......................C........G...C. NC_013763.1_Mylocheilus_caurinus .................C.....C.....G...........A....................T..C...........AC. NC_033926.1_Opsopoeodus_emiliae_ .....T.....A.....T.....C..C.....T........A...........T........TG.C......T....AC. NC_037008.1_Notropis_chalybaeus_ ..T........A.....A..............T....G...A.......................C..C.........C. NC_037009.1_Notropis_heterolepis ...........AT....A..G................G...A....................T..C.....T......C. NC_037010.1_Rhinichthys_obtusus_ ..T.....T........T...................G...G..............C........C...........AC. NC_037014.1_Notropis_hudsonius_i ...........A.....C.....G.....G.......G...AG......................C............C. NC_037015.1_Exoglossum_maxilling .....................................G.......................................GC. NC_054086.1_Ptychocheilus_lucius ........T.....G..C.....C.................AG...................T..C.....T......C. NC_054257.1_Gila_cypha_isolate_S ........T.....G..T.....C.....G...........A....................T..C.....T.....TC. NC_054259.1_Gila_nigrescens_isol ........T..T..C..T.....G.....G...........A.................C..T..C.....T.....TC. NC_054260.1_Hybognathus_amarus_i .....T.....A.....A.....G..C..G.......G...A.......................C..G.........C. NC_054262.1_Notropis_jemezanus_v .....T.....A..C..A..G..G..C..........G...A.....G.................C............C. Pimephales_notatus_R2S3_________ ..T........A.....A........C..........G...A...........T..................T....TC. Pimephales_tenellus_tenellu_R2S1 ...........A.....A...................G...A...........T........T................. Pimephales_tenellus_parvice_R2S2 ...........A.....A...................G...A...........T........T................. Pimephales_notatus_R1S1_________ ..T........A.....A...................G...A...........T..................T....TC. MG570452.1_Pimephales_promelas_i ...........G.....A.....G..C.....T..T.G...A.....G.....T...........C.........G..C. MG570452.1_Pimephales_promelas_S ...........G.....A.....G..C.....T..T.G...A.....G.....T...........C.........G..C. AB626850.1_Megalobrama_terminali ATTAACCCTGGGACTAATTTATGAGTGAACCCAGGGCGGCCTAGAATGAGCAGAATAGGG-AGTTAGTCCAAAATAAGAC AP010779.1_Mylocheilus_caurinus_ G........T...T.......C..A........A..A...........G.......G...-G.C......-...A..... AP011215.1_Gila_sp._1460_mitocho CC.......C...........C..A...........G.......................-.........-...A..... AP011263.1_Scardinius_erythropht .........C......G.C.....A........A..A........G..............-.........-...A..... AP011267.1_Algansea_lacustris_mi .........C..GT....C..C..A........A..A......................A-G.C.....T-...A..... AP011268.1_Yuriria_alta_mitochon ......A..C.....G..C.....A........A..A.......................-G.C.....T-...A..... AP011273.1_Hybognathus_nuchalis_ G..G.....T...T...................A..A.......................-..C.....T-...A..... AP011274.1_Couesius_plumbeus_mit GC.......T..............A...........G........G..........G...-G........-...A..... AP011275.1_Platygobio_gracilis_m .........C...T.......C..A........A..A.....G..G..............-G.C.....T-...A..... AP011277.1_Erimystax_dissimilis_ .........T...T.......C..A........A..A........G.....G........-T.C......-...A..... AP011279.1_Pimephales_promelas_m .........T...T..........A........A..G...T..........G........-..C.....T-...A..... AP011280.1_Clinostomus_elongatus .........T......G....C...........A..A..T...................A-G.C......-...A..... AP012079.1_Luxilus_chrysocephalu G..G.....C..GT.............G.....A..A.................G.G...-G.C......-...A..... AP012080.1_Macrhybopsis_gelida_m G........T...T...................A..A...........G..........A-G.C.....T-...A..... AP012083.1_Notropis_atherinoides .C.G.....C..GT....C..............A..G..A.....G.....G........-G.C.....T-...C..... AP012084.1_Notropis_baileyi_mito .C.......C..GT.......C..A...........A.......................-..C.....T-...G..... AP012087.1_Cyprinella_galactura_ .........T..............A...........G.......................-G.C.....T-...C..... AP012088.1_Hybopsis_lineapunctat .........T..............A........A..G........G..G...........-..C.....T-...G..... AP012090.1_Luxilus_cornutus_mito C..G.....C...T....C.....A.....T..A..A...........G.....G.G...-G.C......-...G..... AP012091.1_Lythrurus_ardens_mito .........T..GT..G....C..A........A..A.......................-..C.....T-..GA..... AP012092.1_Lythrurus_fumeus_mito ...G.....T...T.G..C.....A...........A...T..................A-G.C.....T-..GA..... AP012093.1_Lythrurus_lirus_mitoc .........T..G..T.....C.....G.....A..A.......................-G.C.....T-..GA..... AP012094.1_Lythrurus_umbratilis_ ...G.....T..GT..G....C..A........A..A.......................-..C.....T-..GA..... AP012095.1_Macrhybopsis_meeki_mi .C.......T...T.......C..A........A..G...........G..........A-G.C.....T-...A..... AP012097.1_Notropis_bifrenatus_m C..G.....C...T....C.....A........A..G...................GA..-G.C......-...G..... AP012098.1_Pimephales_sp._MCZunc .C.......T...T..........A...........G...........G...........GG.C.....T-...G..... AP012100.1_Notropis_telescopus_m .........C..G.....C.....A........A..G..............G........-G.C.....T-...C..... AP012101.1_Pimephales_notatus_mi .C.......T...T..........A...........G...T...................-G.C.....T-...G..... AP012102.1_Pimephales_vigilax_mi .C.......T...T..........A........A..G..TT.................A.-..C.....T-..GA..... AP012103.1_Pogonichthys_macrolep .C.......C...........C..A........A..G........G..............-..C......-...A..... AP012106.1_Richardsonius_balteat .........A..G...G....C..A........A..A.....G...........G...A.-G.C......-...A..... AP012108.1_Notropis_chrosomus_mi G........C...........C.....G........A.....................A.-G.C.....T-...G..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .C.......T...T..........A........A..G..TT.................A.-..C.....T-..GA..... Pimephales_vigilax_R1S3_________ .C.......T...T..........A........A..G..TT.................A.-..C.....T-..GA..... DQ536429.1_Notropis_stramineus_m .........C...........C..A........A..A..T..............G.....-G.C.....T-...A..... JX910141.1_Squaliobarbus_curricu .........A........C..C..A........A..T.......................-.............C..... KC351187.1_Squaliobarbus_curricu .........A........C..C..A........A..T.......................-.............C..... KT278765.1_Pimephales_promelas_m .........T...T..........A........A..G...T..........G........-..C.....T-...A..... KT289925.1_Pimephales_promelas_m .........T...T...................A..G...T....G.....G........-..C.....T-...A..... KT424924.1_Rhinichthys_osculus_m C........T...T..G....C..A........A..A.....G.....G..G........-G.C......-...A..... KU200257.1_Chanodichthys_ilishae G........A.....G..C...........T..A..T.......................-G............C..... MF972070.1_Siphateles_bicolor_mo CC.......C......G.C..C..A...........G.......................-.........-...A..... MG570407.1_Notropis_chalybaeus_v ...G.....C..GT.......C..A........A..G.......................-G.C.....T-...A..... MG570408.1_Notropis_bifrenatus_v C..G.....C...T....C.....A........A..G...................GA..-G.C......-...G..... MG570413.1_Notropis_heterolepis_ G........C........C.....A........A..G.......................-..C.....T-...A..... MG570416.1_Rhinichthys_obtusus_v C........T...T..G.C..C..A...........A.....G........G......A.-G.C......-...G..... MG570417.1_Rhinichthys_obtusus_v C........T...T..G.C..C..A...........A.....G........G......A.-G.C......-...G..... MG570420.1_Pimephales_notatus_vo .C.......T...T..........A...........G...........G...........GG.C.....T-...G..... MG570443.1_Notropis_hudsonius_is T........T...........C..A..G..T..A..A...........G..........A-G.C.....T-...A..... MG570444.1_Rhinichthys_atratulus C........T..GT..G....C...........A..A..A..G.....G..G........-G.C......-...G..... MG570445.1_Rhinichthys_atratulus C........T..GT..G....C...........A..A..A..G..G..G..G........-G.C......-...G..... MG570447.1_Luxilus_cornutus_isol C..G.....C...T....C.....A.....T..A..A...........G.....G.G...-G.C......-...G..... MG570449.1_Luxilus_cornutus_isol C..G.....C...T....C.....A.....T..A..A...........G.....G.G...-G.C......-...G..... MG570450.1_Pimephales_notatus_is .C.......T...T..........A...........G...........G...........AG.C.....T-...G..... MG570451.1_Notropis_bifrenatus_i C..G.....C...T....C.....A........A..G...................GA..-G.C......-...G..... MG570453.1_Exoglossum_maxillingu .........T...T.......C..A........A..A........G.....G........-T.C......-...A..... MG570454.1_Pimephales_promelas_i .C.......T...T...................A..G...T....G.....G........-..C.....T-...A..... MG570455.1_Notropis_atherinoides .C.G.....C..GT....C..............A..G..A.....G.....G........-G.C.....T-...C..... MG570456.1_Notropis_atherinoides .C.G.....C..GT....C..............A..G..A.....G.....G........-G.C.....T-...C..... MG570457.1_Pimephales_notatus_is .C.......T...T..........A...........G...........G...........GG.C.....T-...G..... MG570458.1_Pimephales_notatus_is .C.......T...T..........A...........G...........G...........GG.C.....T-...G..... MK421554.1_Parabramis_pekinensis .................................A..........................-................... MT333789.1_Notropis_lutipinnis_v .........T...T.......C..A..G.....A..G.....................AA-G.C.....T-...A..... MT364325.1_Hybognathus_amarus_mi T..G.....T...T.G..............T..A..A.......................-..C.....T-...A..... MT501368.1_Gila_cypha_isolate_SN CC.......C...........C..A...........G.......................-.........-...A..... MT501369.1_Notropis_simus_pecose .C.......T..GT..G....C.....G..T..A..A.................G.....-G.C.....T-...G..... MT501378.1_Hybognathus_amarus_is T..G.....T...T.G..............T..A..A.......................-..C.....T-...A..... MT501385.1_Notropis_jemezanus_vo CC.......C..GT..........A..G.....A..G..AT...................-G.C.....T-...G..... MT501391.1_Rhinichthys_osculus_i C..G.....T...T.......C..A........A..A...T.G..G.....G........-G.C......-...G..... MT667239.1_Rhinichthys_osculus_t C..G.....T...T.......C..A........A..A...T.G..G.....G........-G.C......-...G..... MT667242.1_Luxilus_cornutus_vouc C..G.....C...T....C.....A.....T..A..A...........G.....G.G...-G.C......-...G..... MW300340.1_Hybognathus_placitus_ G........T...T.G........A........A..A.......................-G.C.....T-...G..... MW300341.1_Hybognathus_placitus_ G........T...T.G........A........A..A.......................-G.C.....T-...G..... NC_013763.1_Mylocheilus_caurinus G........T...T.......C..A........A..A...........G.......G...-G.C......-...A..... NC_033926.1_Opsopoeodus_emiliae_ .........C..CT.......C..A........A..G.....G..G..G.........A.-G.C.....T....A..... NC_037008.1_Notropis_chalybaeus_ ...G.....C..GT.......C..A........A..G.......................-G.C.....T-...A..... NC_037009.1_Notropis_heterolepis G........C........C.....A........A..G.......................-..C.....T-...A..... NC_037010.1_Rhinichthys_obtusus_ C........T...T..G.C..C..A...........A.....G........G......A.-G.C......-...G..... NC_037014.1_Notropis_hudsonius_i T........T...........C..A..G..T..A..A...........G..........A-G.C.....T-...A..... NC_037015.1_Exoglossum_maxilling .........T...T.......C..A........A..A........G.....G........-T.C......-...A..... NC_054086.1_Ptychocheilus_lucius CC.......C...........C..............G.......................-.........-...A..... NC_054257.1_Gila_cypha_isolate_S CC.......C...........C..A...........G.......................-.........-...A..... NC_054259.1_Gila_nigrescens_isol CC.......C...........C..A........A..G.......................-.........-...A..... NC_054260.1_Hybognathus_amarus_i T..G.....T...T.G..............T..A..A.......................-..C.....T-...A..... NC_054262.1_Notropis_jemezanus_v CC.G.....C..GT..........A..G.....A..G..A....................-G.C.....T-...G..... Pimephales_notatus_R2S3_________ .........T...T....C.....A........A..G.................G....A-GAC.....T-...A..... Pimephales_tenellus_tenellu_R2S1 .C.......C...T.......C..A........A..G.......................-..C.....T-...A..... Pimephales_tenellus_parvice_R2S2 .........C...T.......C..A........A..A.......................-..C.....T-...A..... Pimephales_notatus_R1S1_________ .........T...T....C.....A........A..G.................G....A-GAC.....T-...A..... MG570452.1_Pimephales_promelas_i .C.......T...T...................A..G...T....G.....G........-..C.....T-...A..... MG570452.1_Pimephales_promelas_S .........T...T..........A........A..G...T..........G........-..C.....T-...A..... AB626850.1_Megalobrama_terminali CTCTGATTTCGGCTCAGAAAATTATGGTTTAAGTCCATGA-CCCCCTTATGACACCAGTACATTTTAGCTTTAGTTCAGC AP010779.1_Mylocheilus_caurinus_ ...................G.C.G.............CAG-.....................C...........C..... AP011215.1_Gila_sp._1460_mitocho ..T................G..CG........A....C..-.T...............................C..... AP011263.1_Scardinius_erythropht .....................CCG........A....C..-.....................C...........C..... AP011267.1_Algansea_lacustris_mi .......................G.............C.G-..............................C.CC...C. AP011268.1_Yuriria_alta_mitochon .......................G.............C.G-.....................C..........CC..... AP011273.1_Hybognathus_nuchalis_ .......................G.....C.......C.G-.....................C.....T....CC..... AP011274.1_Couesius_plumbeus_mit ......................CG........T....C..-.....................C........C..C..... AP011275.1_Platygobio_gracilis_m ................A......G.............C.G-.....................C...........C..... AP011277.1_Erimystax_dissimilis_ .......................G.............C.G-.....................C...........C..... AP011279.1_Pimephales_promelas_m .......................G.............C.G-.T..............................CC..... AP011280.1_Clinostomus_elongatus .......................G........A....C.G-.....................C...........C..... AP012079.1_Luxilus_chrysocephalu .......................G.............C.G-..T..................C..........CC..... AP012080.1_Macrhybopsis_gelida_m ...................G.........A.......CAG-................................CC..... AP012083.1_Notropis_atherinoides .......................G.............C.G-.....................C..........CC..... AP012084.1_Notropis_baileyi_mito ..............T........G.............C.G-.....................C..........CC..... AP012087.1_Cyprinella_galactura_ .......................G.............C.G-.....................C..C.......CC..... AP012088.1_Hybopsis_lineapunctat .......................G........A....C.G-.....................C..........CC..... AP012090.1_Luxilus_cornutus_mito .......................G.............C.G-.....................C..........CC..... AP012091.1_Lythrurus_ardens_mito .......................G......G......C.G-.....................C..........CC..... AP012092.1_Lythrurus_fumeus_mito ...................G...G.............C.G-.....................C..........CC..... AP012093.1_Lythrurus_lirus_mitoc .......................G........A....C.G-.....................C..........CC..... AP012094.1_Lythrurus_umbratilis_ .......................G......G......C.G-.....................C..........CC..... AP012095.1_Macrhybopsis_meeki_mi .............................A.......CAG-.................................C..... AP012097.1_Notropis_bifrenatus_m .......................G.............CAG-.....C...............C..........CC..... AP012098.1_Pimephales_sp._MCZunc ..T....................G.............C.G-.....................C.....T....CC..... AP012100.1_Notropis_telescopus_m .......................................G-.....................C..........CC..... AP012101.1_Pimephales_notatus_mi ..T....................G........A....C.G-.....................C.....T....CC..... AP012102.1_Pimephales_vigilax_mi .................G.....G.....A..A....CAG-...T.................C..........CC..... AP012103.1_Pogonichthys_macrolep .......................G......G......C.G-.....................C...........C..... AP012106.1_Richardsonius_balteat .......................G.....A.......C.G-.....................C...........C..... AP012108.1_Notropis_chrosomus_mi .......................G......G......C.G-.....................C..........CC..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .................G.....G.....A..A....CAG-...T.................C..........CC..... Pimephales_vigilax_R1S3_________ .................G.....G.....A..A....CAG-...T.................C..........CC..... DQ536429.1_Notropis_stramineus_m .......................G......G......C.G-.....................C..........CC..... JX910141.1_Squaliobarbus_curricu ........................................-.................................C..... KC351187.1_Squaliobarbus_curricu ........................................-.................................C..... KT278765.1_Pimephales_promelas_m .......................G........A....C.G-................................CC..... KT289925.1_Pimephales_promelas_m .......................G.............C.G-................................CC..... KT424924.1_Rhinichthys_osculus_m .......................G........A....C.G-.....................C...........C..... KU200257.1_Chanodichthys_ilishae ........................................-T....................C...........C..... MF972070.1_Siphateles_bicolor_mo ......................CG.............C..-.T............................C.CC..... MG570407.1_Notropis_chalybaeus_v ..T.............T......G........A....C.G-.....................C..........CC..... MG570408.1_Notropis_bifrenatus_v .......................G.............CAG-.....C...............C..........CC..... MG570413.1_Notropis_heterolepis_ .......................G.............C.G-................................CC..... MG570416.1_Rhinichthys_obtusus_v .......................G........A....C.G-.....................C...........C..... MG570417.1_Rhinichthys_obtusus_v .......................G........A....C.G-.....................C...........C..... MG570420.1_Pimephales_notatus_vo ..T....................G.............C.G-.....................C.....T....CC..... MG570443.1_Notropis_hudsonius_is .......................G........A....C.G-.....................C..........CC..... MG570444.1_Rhinichthys_atratulus .......................G........A....C.G-.....................C...........C..... MG570445.1_Rhinichthys_atratulus .......................G........A....C.G-.....................C...........C..... MG570447.1_Luxilus_cornutus_isol .......................G.............C.G-.....................C..........CC..... MG570449.1_Luxilus_cornutus_isol .......................G.............C.G-.....................C..........CC..... MG570450.1_Pimephales_notatus_is ..T....................G.............C.G-.....................C.....T....CC..... MG570451.1_Notropis_bifrenatus_i .......................G.............CAG-.....C...............C..........CC..... MG570453.1_Exoglossum_maxillingu .......................G.............C.G-.....................C...........C..... MG570454.1_Pimephales_promelas_i .......................G.............C.G-................................CC..... MG570455.1_Notropis_atherinoides .......................G.............C.G-.....................C..........CC..... MG570456.1_Notropis_atherinoides .......................G.............C.G-.....................C..........CC..... MG570457.1_Pimephales_notatus_is ..T....................G.............C.G-.....................C.....T....CC..... MG570458.1_Pimephales_notatus_is ..T....................G.............C.G-.....................C.....T....CC..... MK421554.1_Parabramis_pekinensis ........................................-....................................... MT333789.1_Notropis_lutipinnis_v .......................G........A....C.G-...T.................C..........CC..... MT364325.1_Hybognathus_amarus_mi .......................G.....C.......C.G-.....................C.....T....CC..... MT501368.1_Gila_cypha_isolate_SN ..T................G..CG.............C..-.T...............................C..... MT501369.1_Notropis_simus_pecose .......................G.....CG......C.G-.....C.........C.....C..........CC..... MT501378.1_Hybognathus_amarus_is .......................G.....C.......C.G-.....................C.....T....CC..... MT501385.1_Notropis_jemezanus_vo .......................G.............C.G-.....................C..........CC..... MT501391.1_Rhinichthys_osculus_i .......................G.............C.GC......C..............C...........C..... MT667239.1_Rhinichthys_osculus_t .......................G.............C.G-......C..............C...........C..... MT667242.1_Luxilus_cornutus_vouc .......................G.............C.G-.....................C..........CC..... MW300340.1_Hybognathus_placitus_ .......................G.....CG......C.G-.....................C..........CC..... MW300341.1_Hybognathus_placitus_ .......................G.....CG......C.G-.....................C..........CC..... NC_013763.1_Mylocheilus_caurinus ...................G.C.G.............CAG-.....................C...........C..... NC_033926.1_Opsopoeodus_emiliae_ ..T........A...........G........AC....AG-................A....C.........TCC..C.. NC_037008.1_Notropis_chalybaeus_ ..T.............T......G........A....C.G-.....................C..........CC..... NC_037009.1_Notropis_heterolepis .......................G.............C.G-................................CC..... NC_037010.1_Rhinichthys_obtusus_ .......................G........A....C.G-.....................C...........C..... NC_037014.1_Notropis_hudsonius_i .......................G........A....C.G-.....................C..........CC..... NC_037015.1_Exoglossum_maxilling .......................G.............C.G-.....................C...........C..... NC_054086.1_Ptychocheilus_lucius ..T................G..CG................-.T...............................C..... NC_054257.1_Gila_cypha_isolate_S ..T................G..CG.............C..-.T...............................C..... NC_054259.1_Gila_nigrescens_isol ..T................G..CG.............C..-.T...............................C..... NC_054260.1_Hybognathus_amarus_i .......................G.....C.......C.G-.....................C.....T....CC..... NC_054262.1_Notropis_jemezanus_v .......................G.............C.G-.....................C..........CC..... Pimephales_notatus_R2S3_________ ......................CG.............C.G-.....................C.....T....CC..... Pimephales_tenellus_tenellu_R2S1 .......................................G-.....................C..........CC..... Pimephales_tenellus_parvice_R2S2 .......................................G-.....................C..........CC..... Pimephales_notatus_R1S1_________ ......................CG.............C.G-.....................C.....T....CC..... MG570452.1_Pimephales_promelas_i .......................G.............C.G-................................CC..... MG570452.1_Pimephales_promelas_S .......................G.............C.G-.T..............................CC..... AB626850.1_Megalobrama_terminali ATTCATTTTAGGATTAATAGGACTAGCATTCCACCGCACCCACCTACTCTCCGCACTCCTGTGCTTAGAGGGAATAATAC AP010779.1_Mylocheilus_caurinus_ C..T........GC.T..G...........T..T.....G...T....T......T.AT.A.....G..A.....G.... AP011215.1_Gila_sp._1460_mitocho C..T...C....GC.C..............T........A..T..T.........T.A......C.............G. AP011263.1_Scardinius_erythropht C..T.........C................T..T.....A.....G.....T.....AT.A...C.G..A.........T AP011267.1_Algansea_lacustris_mi ...T........CC.T.................T..T..A..T...........G.....A...........G....... AP011268.1_Yuriria_alta_mitochon ...T.........C.T.................T.....A..T..G.........T.G..A........A..C....... AP011273.1_Hybognathus_nuchalis_ ...T.........C.T......T..........T..T..T.....G........C..G..A...........T..G...T AP011274.1_Couesius_plumbeus_mit C..T...C....GC.C.....GT.......T..T.....A..T.....T..T.....A...........A..T....... AP011275.1_Platygobio_gracilis_m ...T.........C.T.................T.....A..T..G..T..T...T.A..C........A.....G.... AP011277.1_Erimystax_dissimilis_ C..T...C.....C.T.....GT..........T.....A..T.....T......T.A..A..T.....A.......... AP011279.1_Pimephales_promelas_m ...T..A......C.T.....G........T..T.....A........T..T.....G...........A..G....... AP011280.1_Clinostomus_elongatus C..T.C......GC.T.................T..T..G..TT....T......T.AT.......G........G...T AP012079.1_Luxilus_chrysocephalu ...T.....G...C................T..T..T..G..TT....T.....G.....A........A..T..G..G. AP012080.1_Macrhybopsis_gelida_m ...T..C...............T..........T.....G.....T..T..T...T.AT.A..T.....A.......... AP012083.1_Notropis_atherinoides ...T.........C.T......T..........T..T..A.................G..A...........C......T AP012084.1_Notropis_baileyi_mito ...T.........C.T......T....G.....T..T..A..TT.G.....T..T.....A................... AP012087.1_Cyprinella_galactura_ ...T........CC.T..G..............T.....A........T........T..A........A..T..G...T AP012088.1_Hybopsis_lineapunctat ...T...C.....C.......G...........T..T..G..T.....T.....C..A..T........A.........T AP012090.1_Luxilus_cornutus_mito ...T..C..G...C.T.................T..T..G..TT....T.....G.....A........A..T....... AP012091.1_Lythrurus_ardens_mito ...T........GC.T..G...T.......T..T..T..G.................A..A........A..C......T AP012092.1_Lythrurus_fumeus_mito ...T.........C.T..............T..T..T..A..............G..G..A...........C.....GT AP012093.1_Lythrurus_lirus_mitoc ...T........GC.T..G...T.......T..T..T..A..T..............G..A........A..C......T AP012094.1_Lythrurus_umbratilis_ ...T........GC.T..G...T.......T..T..T..G..T..............A..A........A..C.....GT AP012095.1_Macrhybopsis_meeki_mi ...T..CC..............T..........T.....G..T..T..T..T.....AT.A..T.....A.........T AP012097.1_Notropis_bifrenatus_m ...T........GC.T.................T..T..A..T..C.....T.....A..A...........C..G...T AP012098.1_Pimephales_sp._MCZunc ...T.C.......C.C.....GT..........T.....A.....G..A..T.....A....................GT AP012100.1_Notropis_telescopus_m ...T...C....TC.T..............T..T..A..A..T.....T.....G..A..A...........C......T AP012101.1_Pimephales_notatus_mi ...T.C.......C.C.....GT..........T.....A.....G..A..T.....A...........A........GT AP012102.1_Pimephales_vigilax_mi ...T........GC.T..............T..T.....A.................G..A........A.....G.... AP012103.1_Pogonichthys_macrolep C..T.....G..GC.C...........G..T..T.....A..T.....T......T.AT.A.....G..A..G..G.... AP012106.1_Richardsonius_balteat C..T........GC.T.................T.....A..T.....T......T.AT.A..T.....A.....G..GT AP012108.1_Notropis_chrosomus_mi ...TG........C.T....................T..A..T.....T..T.....T..A................... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...T........GC.T..............T..T.....A.................G..A........A.....G.... Pimephales_vigilax_R1S3_________ ...T........GC.T..............T..T.....A.................G..A........A.....G.... DQ536429.1_Notropis_stramineus_m ...T.........C.T.................T..T........G..T.....G...........G.....C..G.... JX910141.1_Squaliobarbus_curricu ......C......C......................A.....TT.......T........A........A.......... KC351187.1_Squaliobarbus_curricu ......C......C......................A.....TT.......T........A........A.......... KT278765.1_Pimephales_promelas_m ...T..A......C.T.....G........T..T.....A........T..T.....G...........A.......... KT289925.1_Pimephales_promelas_m ...T..A......C.T.....G........T..T.....A........T..T....................G....... KT424924.1_Rhinichthys_osculus_m C..T........GC.T......T.G..G..T..T.....G..T.....T......T.G..A..T..G..A.......... KU200257.1_Chanodichthys_ilishae .............C.......G.......................G..............A........A.........T MF972070.1_Siphateles_bicolor_mo C..TG..C....GC.C...........G..T........A..T..T.........T.A......C.............G. MG570407.1_Notropis_chalybaeus_v ...T..A......C.C..............T..T..T..A...........T......T.A........A.....G..G. MG570408.1_Notropis_bifrenatus_v ...T........GC.T.................T..T..A..T..C.....T.....A..A...........C..G...T MG570413.1_Notropis_heterolepis_ ...T.....G...C.T.................T.....A..T..G..T........G..A...........T..G.... MG570416.1_Rhinichthys_obtusus_v C..T........GC.C......T....G..T........A..T........A.....GT.A........A.......... MG570417.1_Rhinichthys_obtusus_v C..T........GC.C......T....G..T........A..T........A.....GT.A........A.......... MG570420.1_Pimephales_notatus_vo ...T.C.......C.C.....GT..........T.....A.....G..A..T.....A....................GT MG570443.1_Notropis_hudsonius_is ...T.........C.T...........G.....T.....A........T.....G..G..A..................T MG570444.1_Rhinichthys_atratulus C..T.........C.C......T....G..T........A..T.....T........AT.A.....G.....G....... MG570445.1_Rhinichthys_atratulus C..T.........C.C......T....G..T........A..T.....T........AT.A.....G.....G....... MG570447.1_Luxilus_cornutus_isol ...T..C..G...C.T.................T..T..G..TT....T.....G..............A.......... MG570449.1_Luxilus_cornutus_isol ...T..C..G...C.T.................T..T..G..TT....T.....G..............A.......... MG570450.1_Pimephales_notatus_is ...T.C.......C.C.....GT..........T.....A.....G..A..T.....A....................GT MG570451.1_Notropis_bifrenatus_i ...T........GC.T.................T..T..A..T..C.....T.....A..A...........C..G...T MG570453.1_Exoglossum_maxillingu C..T...C.....C.T.....GT..........T.....A..T.....T......T.A..A..T.....A.......... MG570454.1_Pimephales_promelas_i ...T..A......C.T.....G........T..T.....A........T..T....................G....... MG570455.1_Notropis_atherinoides ...T.........C.T......T..........T..T..A.................G..A...........C......T MG570456.1_Notropis_atherinoides ...T.........C.T......T..........T..T..A.................G..A...........C......T MG570457.1_Pimephales_notatus_is ...T.C.......C.C.....GT..........T.....A.....G..A..T.....A....................GT MG570458.1_Pimephales_notatus_is ...T.C.......C.C.....GT..........T.....A.....G..A..T.....A....................GT MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...T.........C.C..G..............T..T..A.....G.....T.....T..A..T.....A.......... MT364325.1_Hybognathus_amarus_mi ...T........CC.T......T.............T..T..T..G..T.....C...T.A...........T..G...T MT501368.1_Gila_cypha_isolate_SN C..T...C....GC.T.....G........T........A..T..T.........T.A...................... MT501369.1_Notropis_simus_pecose ...T........GC........T..........T.....A.....G.....T........A...........G......T MT501378.1_Hybognathus_amarus_is ...T........CC.T......T.............T..T..T.....T.....C...T.A...........T..G...T MT501385.1_Notropis_jemezanus_vo ...T.........C.T..G...T..........T..T..A..............G..G..A........A..C.....G. MT501391.1_Rhinichthys_osculus_i C..TG.C......C.T......T.G..G..T..T.....G........T......T.A..A..T..G.....G....... MT667239.1_Rhinichthys_osculus_t C..TG.C......C.T......T.G..G..T..T.....G........T......T.A..A..T..G.....G....... MT667242.1_Luxilus_cornutus_vouc ...T..C..G...C.T.................T..T..G..TT....T.....G..............A.......... MW300340.1_Hybognathus_placitus_ .............C.T.................T..T..T..T.....T.....G..G..T...........T......T MW300341.1_Hybognathus_placitus_ .............C.T.................T..T..T..T.....T.....G..G..T........A..T......T NC_013763.1_Mylocheilus_caurinus C..T........GC.T..G...........T..T.....G...T....T......T.AT.A.....G..A.....G.... NC_033926.1_Opsopoeodus_emiliae_ ...T........GC.C.C...G........T..T.....A...T...........T.A..A........A.........T NC_037008.1_Notropis_chalybaeus_ ...T..A......C.C..............T..T..T..A...........T......T.A........A.....G..G. NC_037009.1_Notropis_heterolepis ...T.....G...C.T.................T.....A..T..G..T........G..A...........T..G.... NC_037010.1_Rhinichthys_obtusus_ C..T........GC.C......T....G..T........A..T........A.....GT.A........A.......... NC_037014.1_Notropis_hudsonius_i ...T.........C.T...........G.....T.....A........T.....G..G..A..................T NC_037015.1_Exoglossum_maxilling C..T...C.....C.T.....GT..........T.....A..T.....T......T.A..A..T.....A.......... NC_054086.1_Ptychocheilus_lucius C..T...C....GC.C..............T........A..T..T.........T.A..A...C............... NC_054257.1_Gila_cypha_isolate_S C..T...C....GC.T.....G........T........A..T..T.........T.A......C............... NC_054259.1_Gila_nigrescens_isol C..TG..C....GC.C..............T........A..T..T.........T.A..A...C............... NC_054260.1_Hybognathus_amarus_i ...T........CC.T......T.............T..T..T..G..T.....C...T.A...........T..G...T NC_054262.1_Notropis_jemezanus_v ...T.........C.T..G...T..........T..T..A..............G..G..A........A..C.....G. Pimephales_notatus_R2S3_________ ...T.C.......C.C......T..........T.....G........G..T.....A..A...........G.....GT Pimephales_tenellus_tenellu_R2S1 ...T........GC.T.................T.....A........T........T.....T.....A........G. Pimephales_tenellus_parvice_R2S2 ...T........GC.T.....G...........T.....A..T.....T........T.....T.....A........G. Pimephales_notatus_R1S1_________ ...T.C.......C.C......T..........T.....G........G..T.....A..A...........G.....GT MG570452.1_Pimephales_promelas_i ...T..A......C.T.....G........T..T.....A........T..T....................G....... MG570452.1_Pimephales_promelas_S ...T..A......C.T.....G........T..T.....A........T..T.....G...........A..G....... AB626850.1_Megalobrama_terminali TATCCCTATTTATTGCACTAGCCCTATGGGCCTTACAATTCGAATCAACAAGCTTCTCCGCAGCCCCTATGCTGTTACTA AP010779.1_Mylocheilus_caurinus_ ................G...........AA.AC.......T.................TA..........A..AC..T.G AP011215.1_Gila_sp._1460_mitocho .C..AT..........G......T....A..AA.......T.................TA.C..A........AC.T... AP011263.1_Scardinius_erythropht .................T.G.....C..A...C....G....................TA..........A..AC..... AP011267.1_Algansea_lacustris_mi .G...............T..C........A.GC....G..T..................A.T........A..AC....G AP011268.1_Yuriria_alta_mitochon .G.......................G...A.A........T.................TA.T.........T.AC..... AP011273.1_Hybognathus_nuchalis_ ..........C..................A.AC.......T.................TA.T........A..AC..... AP011274.1_Couesius_plumbeus_mit .........................G..A..AC....G..............T..T..TA..........A........G AP011275.1_Platygobio_gracilis_m ................G...........AA.AC.C.....T..................A.G.....A..A..CC..T.. AP011277.1_Erimystax_dissimilis_ ......................T.....AA.GC.......T........C..T.....TA..........A..AC....G AP011279.1_Pimephales_promelas_m ......................T......A.AC.......T..............T..TA.T..A.....A...C..... AP011280.1_Clinostomus_elongatus ............................A..AC.........................TA.G...........AC....G AP012079.1_Luxilus_chrysocephalu .G...............T...........A.AC.......T.................TA.T........A..AC.C... AP012080.1_Macrhybopsis_gelida_m ....AT................TT....AA.AC.C..G..T.......T.........TA.......A..A..AC.C... AP012083.1_Notropis_atherinoides .G..T.......................AA.AC.G.....T..G..............TA.C..A.....A..AC.GT.. AP012084.1_Notropis_baileyi_mito ............................AA..C.......T..............T...A.T........AT..C.G... AP012087.1_Cyprinella_galactura_ .G...T......................AA.GC....G..T.....C............A.C........A...C.T... AP012088.1_Hybopsis_lineapunctat .................T..........AA.A........T..G..G............A.T........A..AC..... AP012090.1_Luxilus_cornutus_mito .................T..........AA.AC.G.....T.................TA.C........A..AC.C... AP012091.1_Lythrurus_ardens_mito .G.....G...........G.........A.AC.G..G....................TA.T.....C...T..C....G AP012092.1_Lythrurus_fumeus_mito .G.....G.................G..AA.AC.C.....T.................TA.T........AT.AC.GT.G AP012093.1_Lythrurus_lirus_mitoc .G..........................AA.AC.G..G.....G..............TA.T...........AC.G..G AP012094.1_Lythrurus_umbratilis_ .G.....G...........G.........A.AC.G..G....................TA.T.........T..C....G AP012095.1_Macrhybopsis_meeki_mi ....A.................TT....AA.AC.C.....T.......T.........TA.......A......C..... AP012097.1_Notropis_bifrenatus_m .G...........C..G..T........AA.A........T.....G...........TA.T..A.....AT.AC..... AP012098.1_Pimephales_sp._MCZunc .G...............T.....T....AA.AC.......T..............T..TA.T..A......T.AC.T... AP012100.1_Notropis_telescopus_m .G..........................AA.AC.......T.................TA.T........A...C.G... AP012101.1_Pimephales_notatus_mi .G.....................T....AA.AC.......T..............T..TA.T..A.....AT.AC.T... AP012102.1_Pimephales_vigilax_mi ....T.......................AA.AC.T.....T..............T..TA.C..A..A..AT.AC..T.. AP012103.1_Pogonichthys_macrolep ................G...........AA.AC.......T.................TA.G........A..TC..... AP012106.1_Richardsonius_balteat .G..........................AA.AC.........................TA.G............C..... AP012108.1_Notropis_chrosomus_mi .G...............T.G........AA.AC.......T.................TA.............A...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....T.......................AA.AC.T.....T..............T..TA.C..A..A..AT.AC..T.. Pimephales_vigilax_R1S3_________ ....T.......................AA.AC.T.....T..............T..TA.C..A..A..AT.AC..T.. DQ536429.1_Notropis_stramineus_m ..........C........G.....G..AA.AC.......T.................TA.C........A..TC.G... JX910141.1_Squaliobarbus_curricu ..........C......T.G..T..C..A...C.......T...........T.....T........A..AT.AC..... KC351187.1_Squaliobarbus_curricu ..........C......T.G..T..C..A...C.......T...........T.....T........A..AT.AC..... KT278765.1_Pimephales_promelas_m ......................T......A.AC.......T..............T..TA.T..A.....A...C..... KT289925.1_Pimephales_promelas_m ......................T......A.AC.......T..............T..TA.T..A.....A..AC..... KT424924.1_Rhinichthys_osculus_m .......................T....AA.AC....G..T.................TA.C.....C..A...C....G KU200257.1_Chanodichthys_ilishae .......G........................C.............G..........................A...... MF972070.1_Siphateles_bicolor_mo .T..A.....C.....G......T....A..AA....G..T.................TA.C..A.....A..AC.T... MG570407.1_Notropis_chalybaeus_v .........................C..AA.AC.......T..................A.T........A..A...... MG570408.1_Notropis_bifrenatus_v .G...........C..G..T........AA.A........T.....G...........TA.T..A.....AT.AC..... MG570413.1_Notropis_heterolepis_ .C...T...........T.G.........A.AC.G.....T..G.....G........TA.C..T.....AT.AC..... MG570416.1_Rhinichthys_obtusus_v ......................T.....A..AC.G.....T.................TA..........A......... MG570417.1_Rhinichthys_obtusus_v ......................T.....A..AC.G.....T.................TA..........A......... MG570420.1_Pimephales_notatus_vo .G...............T.....T....AA.AC.......T..............T..TA.T..A......T.AC.T... MG570443.1_Notropis_hudsonius_is .............C...T....TT.G...A.AC.......T..G..T........T..TA.T..T..C..A..AC....G MG570444.1_Rhinichthys_atratulus ....T.......................A..AC.......T.................TA.......C..A...C....G MG570445.1_Rhinichthys_atratulus ....T.......................A..AC.......T.................TA.......C..A...C....G MG570447.1_Luxilus_cornutus_isol ..........C......T..........AA.AC.G.....T.................TA.C........A..AC.C... MG570449.1_Luxilus_cornutus_isol ..........C......T..........AA.AC.G.....T.................TA.C........A..AC.C... MG570450.1_Pimephales_notatus_is .G...............T.....T....AA.AC.......T..............T..TA.T..A......T.AC.T... MG570451.1_Notropis_bifrenatus_i .G...........C..G..T........AA.A........T.....G...........TA.T..A.....AT.AC..... MG570453.1_Exoglossum_maxillingu ......................T.....AA.GC.......T........C..T.....TA..........A..AC....G MG570454.1_Pimephales_promelas_i .G....................T......A.AC.......T..............T..TA.T..A.....A..AC..... MG570455.1_Notropis_atherinoides .G..T...............A.......AA.AC.G.....T..G..............TA.C..A.....AT..C.GT.. MG570456.1_Notropis_atherinoides .G..T.......................AA.AC.G.....T..G..............TA.C..A.....A..AC.GT.. MG570457.1_Pimephales_notatus_is .G...............T.....T....AA.AC.......T..............T..TA.T..A......T.AC.T... MG570458.1_Pimephales_notatus_is .G...............T.....T....AA.AC.......T..............T..TA.T..A......T.AC.T... MK421554.1_Parabramis_pekinensis ..........................................................................C..... MT333789.1_Notropis_lutipinnis_v ...................G........AA.AC.......T........T..T.....TA.C.....C.....AC..... MT364325.1_Hybognathus_amarus_mi ..........C.................AA.AC.......T..................A.T........A..AC.G... MT501368.1_Gila_cypha_isolate_SN .C..A...........G......T....A..AA.......T.................TA.C..A..A..A..AC.T... MT501369.1_Notropis_simus_pecose .G........C..C..GT.G.....C..AA.AC.......T..............T...A.T............C.G... MT501378.1_Hybognathus_amarus_is ..........C.................AA.AC.......T..................A.T........AT.AC.G... MT501385.1_Notropis_jemezanus_vo .C..T.......................AA.AC.G.....T..G..............TA.T..A......T.AC.G... MT501391.1_Rhinichthys_osculus_i .......................T....AA.AC.C..G..T.....C...........TA.C........AT.AC....G MT667239.1_Rhinichthys_osculus_t .......................T....AA.AC.C..G..T.....C...........TA.C........AT.AC....G MT667242.1_Luxilus_cornutus_vouc ..........C......T..........AA.AC.G.....T.................TA.C........A..AC.C... MW300340.1_Hybognathus_placitus_ .....T....C.....G..G.........A.GC....G..T.................TA.T.....C..A...C..T.G MW300341.1_Hybognathus_placitus_ .....T....C.....G..G.........A.GC....G..T.................TA.T.....C..A...C..T.G NC_013763.1_Mylocheilus_caurinus ................G...........AA.AC.......T.................TA..........A..AC..T.G NC_033926.1_Opsopoeodus_emiliae_ .......................T....AATAC.C.....T..C.......AT.....TA.G..A..A..A..A...T.. NC_037008.1_Notropis_chalybaeus_ .........................C..AA.AC.......T..................A.T........A..A...... NC_037009.1_Notropis_heterolepis .C...T...........T.G.........A.AC.G.....T..G.....G........TA.C..T.....AT.AC..... NC_037010.1_Rhinichthys_obtusus_ ......................T.....A..AC.G.....T.................TA..........A......... NC_037014.1_Notropis_hudsonius_i .............C...T....TT.G...A.AC.......T..G..T........T..TA.T..T..C..A..AC....G NC_037015.1_Exoglossum_maxilling ......................T.....AA.GC.......T........C..T.....TA..........A..AC....G NC_054086.1_Ptychocheilus_lucius .C..A..................T....A..AA.......T.....G.....T.....TA.C........A..AC.T... NC_054257.1_Gila_cypha_isolate_S .C..A...........G......T....A..AA.......T.................TA.C..A..A..A..AC.T... NC_054259.1_Gila_nigrescens_isol .C..A...........G......T....A..AA.......T.................TA.C..A..C..A..AC.C... NC_054260.1_Hybognathus_amarus_i ..........C.................AA.AC.......T..................A.T........AT.AC.G... NC_054262.1_Notropis_jemezanus_v .C..T.......................AA.AC.G.....T..G..............TA.T..A......T.AC.G... Pimephales_notatus_R2S3_________ ....T.....C..C...T.....T....AA.AC.......T..............T...A.T..A.....A..AC.TT.. Pimephales_tenellus_tenellu_R2S1 .....T.G..............TT....AA.AC.......T...........T..T..TA.T.TA..C..A..AC.C... Pimephales_tenellus_parvice_R2S2 .....T................TT....AA.AC.......T...........T..T..TA.T..A..C..A..AC.T... Pimephales_notatus_R1S1_________ ....T.....C..C...T.....T....AA.AC.......T..............T...A.T..A.....A..AC.TT.. MG570452.1_Pimephales_promelas_i .G....................T......A.AC.......T..............T..TA.T..A.....A..AC..... MG570452.1_Pimephales_promelas_S ......................T......A.AC.......T..............T..TA.T..A.....A...C..... AB626850.1_Megalobrama_terminali GCCTTCTCCGCCTGCGAAGCGAGCACAGGCCTTGCACTCCTAGTAGCCACAGCCCGAACTCATGGGACCGACCGTTTACA AP010779.1_Mylocheilus_caurinus_ .....T.....T........A..................T...................C.....C........C..... AP011215.1_Gila_sp._1460_mitocho ..T........T.....G..AG.......A.....G..............G.....C..C..C..C........AC.... AP011263.1_Scardinius_erythropht ..T..T..T...........A..T.....A.......................T..T..C..C..C..A.....CC.... AP011267.1_Algansea_lacustris_mi ..T........T........A.....G............T...................C.....C........C..... AP011268.1_Yuriria_alta_mitochon ..T..T.....T..T.....A.....G..T.....C.....G.................C..C..C..T........G.. AP011273.1_Hybognathus_nuchalis_ ..T..T..T.....T.....A.....G............T..........G.....G..C.....C..T..T........ AP011274.1_Couesius_plumbeus_mit ....................A........A.........T....G...........C..C..C..C........CC.G.. AP011275.1_Platygobio_gracilis_m ..T.....G..T..T..G..A.....G........G....................C..C..C..C..T......C.G.. AP011277.1_Erimystax_dissimilis_ ...........T..T..G..A..T...............T.G..............G..C..C..C..T........... AP011279.1_Pimephales_promelas_m ..T..T..T..T..T.....A.................TT.......T...........C..C..C..T........... AP011280.1_Clinostomus_elongatus ..............T.....A...........C......T................G..C..C..C.....T..C..G.. AP012079.1_Luxilus_chrysocephalu ..T..T.....T..T..G..A.....G............T.G..............G..C..C..C.............. AP012080.1_Macrhybopsis_gelida_m ..T..T..T..A..T.....A.................TT.............T.....C.....C..T.....CC.... AP012083.1_Notropis_atherinoides ..T..T.....T..T.....A..T..G............T.G..T.................C..C.........C.... AP012084.1_Notropis_baileyi_mito ..T..T.....T..T.....A..T..C...........TT...................C.....C..T.....C..... AP012087.1_Cyprinella_galactura_ ........A..T..T.....A..T.....T......T.AT.............T..C..C..C..C..T..T...C.... AP012088.1_Hybopsis_lineapunctat ..T..T.....T..T.....A..................T.......T...........C..C..C..T.....C..... AP012090.1_Luxilus_cornutus_mito ..T..T.....T..T.....A.....G............T.G..............G..C..C..C..T.....CC.... AP012091.1_Lythrurus_ardens_mito ..T..T..T..T..T.....A..T..G............T................G..C..C..C..T........... AP012092.1_Lythrurus_fumeus_mito ..T..T..T.....T.....A..T..G............T.......T...........C.....C..T........G.. AP012093.1_Lythrurus_lirus_mitoc ..T..T..T..T..T.....A..T..G............T................G..C..C..C..T.....C..G.. AP012094.1_Lythrurus_umbratilis_ ..T..T..T..T..T.....A..T..G............T................G..C..C..C..T........... AP012095.1_Macrhybopsis_meeki_mi ..T........G..T.....A........T..C.....T....................C..C..C........CC.... AP012097.1_Notropis_bifrenatus_m ..............T.....A.....G..T.........T...................C.....C........CC.G.. AP012098.1_Pimephales_sp._MCZunc ..T.....T..T..T.....A...G....T........AT................G..C..C..T..T........... AP012100.1_Notropis_telescopus_m ..T........T..T.....A..T.....T.........T.......T........T..C..C..C.............. AP012101.1_Pimephales_notatus_mi ..T.....T..T..T.....A...G....T........AT...................C..C..C..T........... AP012102.1_Pimephales_vigilax_mi ..T..T.....T..T.....A...........A.....TT...................C..C..C..T.....C..... AP012103.1_Pogonichthys_macrolep .....T..............A......................................C..C..C........C..... AP012106.1_Richardsonius_balteat ........T...........A..T...............T.G...........T.....C..C..C........C..... AP012108.1_Notropis_chrosomus_mi ..T..T.....A..T.....A..T...............T..........G........C..C..C..T.....C..G.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..T..T.....T..T.....A...........A.....TT...................C..C..C..T.....C..... Pimephales_vigilax_R1S3_________ ..T..T.....T..T.....A...........A.....TT...................C..C..C..T.....C..... DQ536429.1_Notropis_stramineus_m ..T..T..T.....T..G..C..T........C..G...T..........G.....G..C..C..C..T..T...C.... JX910141.1_Squaliobarbus_curricu ..............T..G..A.....C..T..C.....TT..........G..............A........CC.... KC351187.1_Squaliobarbus_curricu ..............T..G..A.....C..T..C.....TT..........G..............A........CC.... KT278765.1_Pimephales_promelas_m ..T..T..T..T..T..G..A.................TT.......T...........C..C..T..T........... KT289925.1_Pimephales_promelas_m ..T..T..T..T..T.....A.................TT.......T...........C..C..C..T........... KT424924.1_Rhinichthys_osculus_m ...........T..T.....A..............C...T.G.................C..C..C..T........... KU200257.1_Chanodichthys_ilishae ....................A.....G................................C.....A..T..T........ MF972070.1_Siphateles_bicolor_mo ..T........T.....G..A...................................C..C..C..C........AC.... MG570407.1_Notropis_chalybaeus_v ..T..T.....T..T.....A..T..C............T................G..C..C..C..T.....C..... MG570408.1_Notropis_bifrenatus_v ..............T.....A.....G..T.........T...................C.....C........CC.G.. MG570413.1_Notropis_heterolepis_ ..T..T.....T..T.....A.....G............T...................C..C..C..T.....A..... MG570416.1_Rhinichthys_obtusus_v ..............T.......................TT.G..............G..C..C..C..T.....C..... MG570417.1_Rhinichthys_obtusus_v ..............T.......................TT.G..............G..C..C..C..T.....C..... MG570420.1_Pimephales_notatus_vo ..T.....T..T..T.....A...G....T........AT................G..C..C..T..T........... MG570443.1_Notropis_hudsonius_is ..T..T........T........................T................G.....C..T..T........G.. MG570444.1_Rhinichthys_atratulus ..............T.....A..................T.G.................C.....C..T.....C..... MG570445.1_Rhinichthys_atratulus ..............T.....A..................T.G.................C.....C..T.....C..... MG570447.1_Luxilus_cornutus_isol ..T..T.....T..T.....A.....G............T.G..............G..C..C..C..T.....CC.... MG570449.1_Luxilus_cornutus_isol ..T..T.....T..T.....A.....G............T.G..............G..C..C..C..T.....CC.... MG570450.1_Pimephales_notatus_is ..T.....T..T..T.....A...G....T........AT................G..C..C..T..T........... MG570451.1_Notropis_bifrenatus_i ..............T.....A.....G..T.........T...................C.....C........CC.G.. MG570453.1_Exoglossum_maxillingu ...........T..T..G..A..T...............T.G..............G..C..C..C..T........... MG570454.1_Pimephales_promelas_i ..T..T..T..T..T.....A.................TT.......T...........C..C..C..T........... MG570455.1_Notropis_atherinoides ..T..T.....T..T.....A..T..G............T.G..T.................C..C.........C.... MG570456.1_Notropis_atherinoides ..T..T.....T..T.....A..T..G............T.G..T.................C..C.........C.... MG570457.1_Pimephales_notatus_is ..T.....T..T..T.....A...G....T........AT................G..C..C..T..T........... MG570458.1_Pimephales_notatus_is ..T.....T..T..T.....A...G....T........AT................G..C..C..T..T........... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..T..T.....A..T.....A..T..G.................G.....G........C.....C..T.....C..G.. MT364325.1_Hybognathus_amarus_mi .....T..T.....T.....A.....G............T................G..C..C..C..T..T...C.... MT501368.1_Gila_cypha_isolate_SN ..T........T.....G..A........T..........................T..C.....C........AC.... MT501369.1_Notropis_simus_pecose ..T..T.....T..T.....A..T...........G..TT..........G.....C..C..C..C..T.....CC.... MT501378.1_Hybognathus_amarus_is .....T..T.....T.....A.....G............T................G..C..C..C..T..T...C.... MT501385.1_Notropis_jemezanus_vo ..T..T.....T..T.....A..T..G............T.G..T..T..............C..C.........C.... MT501391.1_Rhinichthys_osculus_i ..............T.....A..............G..AT.G.................C..C..C..T........G.. MT667239.1_Rhinichthys_osculus_t ..............T.....A..............G..AT.G.................C..C..C..T........G.. MT667242.1_Luxilus_cornutus_vouc ..T..T.....T..T.....A.....G............T.G..............G..C..C..C..T.....CC.... MW300340.1_Hybognathus_placitus_ .....T........T..G..A..T...............T.G........G.....G..C..C..C..T......C.G.. MW300341.1_Hybognathus_placitus_ .....T........T..G..A..T...............T.G..G.....G.....G..C..C..C..T......C.G.. NC_013763.1_Mylocheilus_caurinus .....T.....T........A..................T...................C.....C........C..... NC_033926.1_Opsopoeodus_emiliae_ ..T..T..T..T..T.....A..T.....T.........T.......T...........C..C..C..T....ACC.... NC_037008.1_Notropis_chalybaeus_ ..T..T.....T..T.....A..T..C............T................G..C..C..C..T.....C..... NC_037009.1_Notropis_heterolepis ..T..T.....T..T.....A.....G............T...................C..C..C..T.....A..... NC_037010.1_Rhinichthys_obtusus_ ..............T.......................TT.G..............G..C..C..C..T.....C..... NC_037014.1_Notropis_hudsonius_i ..T..T........T........................T................G.....C..T..T........G.. NC_037015.1_Exoglossum_maxilling ...........T..T..G..A..T...............T.G..............G..C..C..C..T........... NC_054086.1_Ptychocheilus_lucius ..T........T.....G..A........T..........................C.....C..C........AC.... NC_054257.1_Gila_cypha_isolate_S ..T........T.....G..A........T.....G....................T..C.....C........AC.... NC_054259.1_Gila_nigrescens_isol ...........T.....G..A........G.....G....................C..C..C..C........AC.... NC_054260.1_Hybognathus_amarus_i .....T..T.....T.....A.....G............T................G..C..C..C..T..T...C.... NC_054262.1_Notropis_jemezanus_v ..T..T.....T..T.....A..T..G............T.G..T..T..............C..C.........C.... Pimephales_notatus_R2S3_________ ..T.....T..T..T.....A........T........A....................C..C..T..T........... Pimephales_tenellus_tenellu_R2S1 ..T..T..T..T..T.....A.................A.....C..T..............C..C..T......C.... Pimephales_tenellus_parvice_R2S2 ..T..T..T..T..T.....A.....G...........T.....C..T..............C..C..T......C.... Pimephales_notatus_R1S1_________ ..T.....T..T..T.....A........T........A....................C..C..T..T........... MG570452.1_Pimephales_promelas_i ..T..T..T..T..T.....A.................TT.......T...........C..C..C..T........... MG570452.1_Pimephales_promelas_S ..T..T..T..T..T.....A.................TT.......T...........C..C..C..T........... AB626850.1_Megalobrama_terminali AAACCTTAATCTCCTACAATGCTAAAAGTACTAATCCCCACTGTTATACTTTTCCCAACAATTTGATTAGTCTCCCCCAA AP010779.1_Mylocheilus_caurinus_ ............T................GT....T..T..AA....GA.A...........C...C...C...T..T.. AP011215.1_Gila_sp._1460_mitocho ............TT............G...T..G.T.....AA.C..GT.A..T...............AC......T.. AP011263.1_Scardinius_erythropht ............T..G..............T..G.T..T..GA.C.....A.....G.........C.....C..T.T.. AP011267.1_Algansea_lacustris_mi ............T.................T....T..T..GA.....A.A..............GC.G.C...T..... AP011268.1_Yuriria_alta_mitochon .........C..T.................T..........AA.....A.A...............C.G.C...T..... AP011273.1_Hybognathus_nuchalis_ .........C...................TT....T.....AA....GA.A..T.....G......C.G.C...A..T.. AP011274.1_Couesius_plumbeus_mit ............T..C.....T........T..G.......AA.....T.A...............C..A....T..... AP011275.1_Platygobio_gracilis_m ............T.............G..GT....T.....AA.C..GA.G...............C.G.C......... AP011277.1_Erimystax_dissimilis_ ......C.....T................GT....T.....AA.C...A.A........G..C.....GACT........ AP011279.1_Pimephales_promelas_m ............T..C.............CT..........AA.C...A.A...............C.GACT..A..T.. AP011280.1_Clinostomus_elongatus ...T........T................GT....T.....GA.C..GA.A..T........C..G...AC...T..... AP012079.1_Luxilus_chrysocephalu ............T..G...................T.....AA....GA.A..............GC.G.C...T..T.. AP012080.1_Macrhybopsis_gelida_m ............T.................T....T.....AA.....A.A...........C..GC.G.CT..T..T.. AP012083.1_Notropis_atherinoides ............T..............A.TT..G.......AA....GA.A...........C...C.GAC.A....T.. AP012084.1_Notropis_baileyi_mito .........C................GA.TT..........A......A.G........G..C..GC..ACA..T..T.. AP012087.1_Cyprinella_galactura_ .........C..T................TT.......T..AA.....A.A.......T...C...C.G.C...G..... AP012088.1_Hybopsis_lineapunctat ............T................TT.......A..AA.....A.A........G......C.G.C...T..T.. AP012090.1_Luxilus_cornutus_mito ..............................T.G.....T..A.....GA.A..............GC.G.C......... AP012091.1_Lythrurus_ardens_mito G.....A.....T................TT.G........AA.....A.A...............C.G.C...T..... AP012092.1_Lythrurus_fumeus_mito ............T................TT..........AA....GA.A...............C.G.C......... AP012093.1_Lythrurus_lirus_mitoc ............T................TT.G........AA....GA.A..T............C.G.C...T..A.. AP012094.1_Lythrurus_umbratilis_ G.....A.....T................TT.G........AA.....A.A..T............C.G.C...T..... AP012095.1_Macrhybopsis_meeki_mi .........C..T........T........T..........AA.....A.A...........C......TCT..T..T.. AP012097.1_Notropis_bifrenatus_m .............................TT..........A......A.A..T............C.G.C......... AP012098.1_Pimephales_sp._MCZunc ............T..............A.CT....T..T..AA.....A.A........G......C.G.CT..T..T.. AP012100.1_Notropis_telescopus_m ......C..C.................A.TT.......T..AA.....A.A........G......C.G.CTA.T..T.. AP012101.1_Pimephales_notatus_mi ............T..............A.CT....T..T..AA....GA.A........G........G.CT..T..T.. AP012102.1_Pimephales_vigilax_mi .........C.................A.CT....T..T..AA.....T.A..T..............GAC...T..T.. AP012103.1_Pogonichthys_macrolep ...T........T.............G..GT....T.....AA....GA.A...........C...C...C...T..... AP012106.1_Richardsonius_balteat ...T........T.....G..T...........G.T.....AA.C..GA.A...........C...C...C......... AP012108.1_Notropis_chrosomus_mi ............T..............A.TT.......T..G.....GA.A...............C..........T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .........C.................A.CT....T..T..AA.....T.A..T..............GAC...T..T.. Pimephales_vigilax_R1S3_________ .........C.................A.CT....T..T..AA.....T.A..T..............GAC...T..T.. DQ536429.1_Notropis_stramineus_m ......C....................A.TT..G....T..AA.....A.G..............G..G.C...T..T.. JX910141.1_Squaliobarbus_curricu .....................T.............T......A.....T.A...........C...C..ACT........ KC351187.1_Squaliobarbus_curricu .....................T.............T......A.....T.A...........C...C..ACT........ KT278765.1_Pimephales_promelas_m ............T................CT..........AA.C..GA.A...............C.G.CT..A..T.. KT289925.1_Pimephales_promelas_m ............T................CT..........AA.C...A.A...............C.GACT..A..T.. KT424924.1_Rhinichthys_osculus_m .........C..T................GT....T.....AA....GA.A........G..C..GC.G.C......... KU200257.1_Chanodichthys_ilishae ..............................T.................T.A..................AC......... MF972070.1_Siphateles_bicolor_mo .........C..T.................T..G.T..T..AA.C..G..A..T...............AC......... MG570407.1_Notropis_chalybaeus_v ...........................A.TT....T..T..GA.....A.A...........C..GC...C...T..T.. MG570408.1_Notropis_bifrenatus_v .............................TT..........A......A.A..T............C.G.C......... MG570413.1_Notropis_heterolepis_ G.............................T....T.....GA....GA.A........G.....GC...C...T..T.. MG570416.1_Rhinichthys_obtusus_v ............G..C.............G.....T.....AA.C...A.A..............GC.G...G.T..A.. MG570417.1_Rhinichthys_obtusus_v ............G..C.............G.....T.....AA.C...A.A..............GC.G...G.T..A.. MG570420.1_Pimephales_notatus_vo ............T..............A.CT....T..T..AA.....A.A........G......C.G.CT..T..T.. MG570443.1_Notropis_hudsonius_is ...T........T.................T..........A......A.A........G......C.GAC.G.T..... MG570444.1_Rhinichthys_atratulus .........C..G................G.....T..T..AA.C...A.G...............C.G.....T..A.. MG570445.1_Rhinichthys_atratulus .........C..G................G.....T..T..AA.C...A.G..............GC.G.....T..A.. MG570447.1_Luxilus_cornutus_isol ............T.................T.G........A.....GA.A..............GC.G.C......... MG570449.1_Luxilus_cornutus_isol ............T.................T.G........A.....GA.A..............GC.G.C......... MG570450.1_Pimephales_notatus_is ............T..............A.CT....T..T..AA.....A.A........G......C.G.CT..T..T.. MG570451.1_Notropis_bifrenatus_i .............................TT..........A......A.A..T............C.G.C......... MG570453.1_Exoglossum_maxillingu ......C.....T................GT....T.....AA.C...A.A........G..C.....GACT........ MG570454.1_Pimephales_promelas_i ............T................CT..........AA.C...A.A...............C.GACT..A..T.. MG570455.1_Notropis_atherinoides ............T..............A.TT..G.......AA.....A.A...........C..GC.GAC.G....T.. MG570456.1_Notropis_atherinoides ............T..............A.TT..G.......AA....GA.A...........C...C.GAC.G....T.. MG570457.1_Pimephales_notatus_is ............T..............A.CT....T..T..AA.....A.A........G......C.G.CT..T..T.. MG570458.1_Pimephales_notatus_is ............T..............A.CT....T..T..AA.....A.A........G......C.G.CT..T..T.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ............T.............GA.CT..........AA.C..GA.A...............C.G.C......T.. MT364325.1_Hybognathus_amarus_mi .........C...................TT....T.....A......A.A..T.....G......C.GAC...A..T.. MT501368.1_Gila_cypha_isolate_SN ............TT............G...T..G.T..A..AA.C..GT.A..T...............AC......T.. MT501369.1_Notropis_simus_pecose ............T..............A.TT.G.........A....GA.A..T.....G.....GC.T.....T..T.. MT501378.1_Hybognathus_amarus_is .........C...................TT....T.....A.....GA.A..T.....G......C.GAC...A..T.. MT501385.1_Notropis_jemezanus_vo ............T..............A.CT..G.......GA....GA.A...........C...C.GAC.A....T.. MT501391.1_Rhinichthys_osculus_i ............A................G..G..T.....AA.C...A.A........G..C...C...C......T.. MT667239.1_Rhinichthys_osculus_t ............A................G..G..T.....AA.C...A.A........G..C...C...C......T.. MT667242.1_Luxilus_cornutus_vouc ............T.................T.G........A.....GA.A..............GC.G.C......... MW300340.1_Hybognathus_placitus_ .........C...T...............TT.G........AA....GA.A........G.....GC...C...A..T.. MW300341.1_Hybognathus_placitus_ .........C...T...............TT.G........AA....GA.A........G.....GC...C...A..T.. NC_013763.1_Mylocheilus_caurinus ............T................GT....T..T..AA....GA.A...........C...C...C...T..T.. NC_033926.1_Opsopoeodus_emiliae_ .........C..T................CT.......T..AA....GA.A........G.........A.TC..T.T.. NC_037008.1_Notropis_chalybaeus_ ...........................A.TT....T..T..GA.....A.A...........C..GC...C...T..T.. NC_037009.1_Notropis_heterolepis G.............................T....T.....GA....GA.A........G.....GC...C...T..T.. NC_037010.1_Rhinichthys_obtusus_ ............G..C.............G.....T.....AA.C...A.A..............GC.G...G.T..A.. NC_037014.1_Notropis_hudsonius_i ...T........T.................T..........A......A.A........G......C.GAC.G.T..... NC_037015.1_Exoglossum_maxilling ......C.....T................GT....T.....AA.C...A.A........G..C.....GACT........ NC_054086.1_Ptychocheilus_lucius ...T........T.............G...T..G.......AA.C..GT.A..T...............AC...T..T.. NC_054257.1_Gila_cypha_isolate_S ............TT............G...T....T..A..AA.C..GT.A..T...............AC......T.. NC_054259.1_Gila_nigrescens_isol ............TT.G..........G...T..G.T.....AA.C..GT.A..T...............AC......... NC_054260.1_Hybognathus_amarus_i .........C...................TT....T.....A.....GA.A..T.....G......C.GAC...A..T.. NC_054262.1_Notropis_jemezanus_v ............T..............A.CT..G.......GA....GA.A...........C...C.GAC.A....T.. Pimephales_notatus_R2S3_________ ............T..............A.CT....T..T..AA....GA.G........G......C.GAC...T..T.. Pimephales_tenellus_tenellu_R2S1 ............T................CT..G....T..AA.A..GA.A..T........C.....G.C......T.. Pimephales_tenellus_parvice_R2S2 ............T................TT..G....T..AA.A...A.A...........C.....G.C......T.. Pimephales_notatus_R1S1_________ ............T..............A.CT....T..T..AA....GA.G........G........GAC...T..T.. MG570452.1_Pimephales_promelas_i ............T................CT..........AA.C...A.A...............C.GACT..A..T.. MG570452.1_Pimephales_promelas_S ............T..C.............CT..........AA.C...A.A...............C.GACT..A..T.. AB626850.1_Megalobrama_terminali GTGGCTATGAACGACTACAACCGCACATAGTCTCCTAATTGCCCTAATTAGCCTCACATGGTTGAAATGAACATCAGAAA AP010779.1_Mylocheilus_caurinus_ ....T.G.....A........T..T..CG.C...A..........TG..............C.T..G............. AP011215.1_Gila_sp._1460_mitocho A..AT.......AG.C......A.C...G.C...TC.........T.........T.....C.T..G...........G. AP011263.1_Scardinius_erythropht ...AT....G..AG....G..TAGC..C..C..TTCG........T...........C..AC.T..G.....G.....G. AP011267.1_Algansea_lacustris_mi ...AT....GT.A.T...CG..A.C..CG.C...T..........T.CA...........AC.C.GC...........G. AP011268.1_Yuriria_alta_mitochon ...AT....GC.AGT...CG.TA.....G.C...T..........T..A..T..T.....A..TGGG.....T..G..G. AP011273.1_Hybognathus_nuchalis_ A..A........A..C..CG.TA.T..CG.C..TT..........T.CA...........A..T.GC.....T......G AP011274.1_Couesius_plumbeus_mit ...AT.......C..A.....T..T...G.....TC.........C..C.....T.....AC.C.....G..G.....G. AP011275.1_Platygobio_gracilis_m ...AT.......AGTC...G.TA.C...G.G...T....C.....TGCA...........AC.T..C...G....G..GG AP011277.1_Erimystax_dissimilis_ A..A..T.....A..C........T...G..T..TC.........T..............AC.T..G............. AP011279.1_Pimephales_promelas_m A..AT.......AG....C.....C...G.C............T.T.........T....A..T.CC.....T......G AP011280.1_Clinostomus_elongatus A..AT.......A..C........C...G.....AC...C.....T........T.....AC.C..G.....G....... AP012079.1_Luxilus_chrysocephalu A.....G..G..A.T...C...A.C...G.C...T..........T..A.....T.....A..T.GC..G..C.....GG AP012080.1_Macrhybopsis_gelida_m A..AT.....G.A..C..TG.TA.T...G.A...T..........T..A.....TG....AC.C..C........T...G AP012083.1_Notropis_atherinoides ....T........GT...CG.TA.C...G.C...T..........TGCA...........A..TGGC.....T.....GG AP012084.1_Notropis_baileyi_mito ...AT....G..A.....CG.TA.C.....C..TG..........T..A..............T..C..G..C......G AP012087.1_Cyprinella_galactura_ ...AT.......CGTA..C..TA.C...G.C...T.......T..TG.A...........A..C.GC.....C.TG..GG AP012088.1_Hybopsis_lineapunctat ...AT.G.....AGTC..CG.TA.C..CG.C...T....C.....T.CA........G..A..T.GC..GG.C......G AP012090.1_Luxilus_cornutus_mito A........G..A.T...TG..A.C...G.C...T..........TG.A.....T.....A..A.GC.....T.....GG AP012091.1_Lythrurus_ardens_mito ......G.....AG....CG..A.C..CG.C..TT..........T..A..............C..C..T..C......G AP012092.1_Lythrurus_fumeus_mito A..AT.G...........CG..A.T..CG.C...T..........TG.A.....TGTC..A..T.GC..T..C....... AP012093.1_Lythrurus_lirus_mitoc ......G.....AG....CG..A.C...G.C..TT..........T..A..............T..C..T..C......G AP012094.1_Lythrurus_umbratilis_ ......G.....AG....CG..A.C..CG.C..TT..........T..A..............C..C..T..C......G AP012095.1_Macrhybopsis_meeki_mi A...T.......A..C..CG.TA.C...G.A...T..........T..A......G....AC.C..C........T...G AP012097.1_Notropis_bifrenatus_m ...AT.......A.T...TG.TA.T..CG.A...T....C.....T.CA.....T.....A..T.GC.....T..G.... AP012098.1_Pimephales_sp._MCZunc ...AT.......A.....CG.TA.T...G.C..............T.CA.....T........C.GC..G..T....... AP012100.1_Notropis_telescopus_m ....T.......T.TG..CG.T..C..CG.C.....G........TGCA...........A..C.GC.....T....... AP012101.1_Pimephales_notatus_mi ...AT.......A.....CG.TA.T...G.C..............T.CA.....T.....A..C.GC..G..T....... AP012102.1_Pimephales_vigilax_mi A..AT.....G.A.....CG.TA.T..C..C...T..........T..A..T..T.....A..C..C.....T....... AP012103.1_Pogonichthys_macrolep A...........A........T..C...G.C..TA..........TG....T........AC.T..G........G.... AP012106.1_Richardsonius_balteat A..A.....GG.A..C.....T..C..CG.....GC.........TG.C.....T.....AC.T..G..G.....G...G AP012108.1_Notropis_chrosomus_mi A..AT.G.....A.....CG.TA.C..CG.C...T..........TGCA...........A..T.GC..G..CG.....G AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ A..AT.....G.A.....CG.TA.T..C..C...T..........T..A..T..T.....A..C..C.....T....... Pimephales_vigilax_R1S3_________ A..AT.....G.A.....CG.TA.T..C..C...T..........T..A..T..T.....A..C..C.....T....... DQ536429.1_Notropis_stramineus_m ...A..G..G..AGTC..CG..A.C...G.C...T........G.G.CA...........A..C.GC.....C.....G. JX910141.1_Squaliobarbus_curricu A..A........A................................T..C.......T...AC.A..............G. KC351187.1_Squaliobarbus_curricu A..A........A................................T..C.......T...AC.A..............G. KT278765.1_Pimephales_promelas_m A..A........AG....C.....C...G.C............T.T.........T....A..T.CC.....T......G KT289925.1_Pimephales_promelas_m A..AT.......AG....C.....C...G.C............T.T.........T....A..T.CC.....C......G KT424924.1_Rhinichthys_osculus_m A..AT.......AG.C.....T..T...G....TTC.........T.....T........AC.T...............G KU200257.1_Chanodichthys_ilishae ...A........A..C.....T........C........C.....C..C..T........AC.A.....G.......... MF972070.1_Siphateles_bicolor_mo A...........AG.C.....T..C...G.C...AC......T..T........TT....AC.C..G..G........G. MG570407.1_Notropis_chalybaeus_v ...AT.......A..C..CG.TA.C..CG.C..............T.CC...........A..T.GC.....C....... MG570408.1_Notropis_bifrenatus_v ...AT.......A.T...TG.TA.T..CG.A...T....C.....T.CA.....T.....A..T.GC.....T..G.... MG570413.1_Notropis_heterolepis_ ...A........A..C..CG.AA.C..AG.C...T..........TGCA...........A..T.GC.....T.....GG MG570416.1_Rhinichthys_obtusus_v ....T....G..AG.C.....TA.T..CG.....TCT..C.....T...............C.T........C....... MG570417.1_Rhinichthys_obtusus_v ....T....G..AG.C.....TA.T..CG.....TCT..C.....T...............C.T........C....... MG570420.1_Pimephales_notatus_vo ...AT.......A.....CG.TA.T...G.C..............T.CA.....T........C.GC..G..T....... MG570443.1_Notropis_hudsonius_is A..AT.G..G..AGTG..TG.TA.T..CG.C...T..........C..A............C.T.CC...T........G MG570444.1_Rhinichthys_atratulus ...AT....G..AG.C..G..TA.T...G.....TCT........T...........C...C.T..G............. MG570445.1_Rhinichthys_atratulus ...AT....G..AG.C..G..TA.T...G.....TCT........T...........C...C.T..G............. MG570447.1_Luxilus_cornutus_isol A........G..A.T...TG..A.C...G.C...T..........TG.A.....T.....A..T.GC.....T.....GG MG570449.1_Luxilus_cornutus_isol A........G..A.T...TG..A.C...G.C...T..........TG.A.....T.....A..T.GC.....T.....GG MG570450.1_Pimephales_notatus_is ...AT.......A.....CG.TA.T...G.C..............T.CA.....T........C.GC..G..T....... MG570451.1_Notropis_bifrenatus_i ...AT.......A.T...TG.TA.T..CG.A...T....C.....T.CA.....T.....A..T.GC.....T..G.... MG570453.1_Exoglossum_maxillingu A..A..T.....A..C........T...G..T..TC.........T..............AC.T..G............. MG570454.1_Pimephales_promelas_i A..AT.......AG....C.....C...G.C............T.T.........T....A..T.CC.....C......G MG570455.1_Notropis_atherinoides ....T........GTC..CG.TA.C...G.C...T..........TGCA...........A..TGGC.....T.....GG MG570456.1_Notropis_atherinoides ....T........GT...CG.TA.C...G.C...T..........TGCA...........A..TGGC.....T.....GG MG570457.1_Pimephales_notatus_is ...AT.......A.....CG.TA.T...G.C..............G.CA.....T........C.GC..G..T....... MG570458.1_Pimephales_notatus_is ...AT.......A.....CG.TA.T...G.C..............T.CA.....T........C.GC..G..T....... MK421554.1_Parabramis_pekinensis ...A.........................................T.................................. MT333789.1_Notropis_lutipinnis_v A..A.....GG.A.....CG.T..C..CG.C...T..........TGCA..T........AC.A.GC.....T......G MT364325.1_Hybognathus_amarus_mi A..A........A.....CG.TA.T..CG.C..TT..........T.CG...........A..T..C...G.T......G MT501368.1_Gila_cypha_isolate_SN A..A........AG.C........C...G.C...TC...C.....T........TT....AC.T..G...........G. MT501369.1_Notropis_simus_pecose ...A..G.....AG....CG..A.T..CG.C...T..........TGCG........G..A..T.GC.....C....... MT501378.1_Hybognathus_amarus_is A..A........A.....CG.TA.T..CG.C..TT..........T.CG...........A..T..C.....T......G MT501385.1_Notropis_jemezanus_vo ....T.......AGTC..CG.TA.C..AG.C...T..........TGCA........G.....T.GC.....T.....GG MT501391.1_Rhinichthys_osculus_i A..AT.......AG.C.....TA.T...G....TTC.........T.....T..T.....AC.T...............G MT667239.1_Rhinichthys_osculus_t A..AT.......AG.C.....TA.T...G....TTC.........T.....T..T.....AC.T...............G MT667242.1_Luxilus_cornutus_vouc A........G..A.T...TG..A.C...G.C...T..........TG.A.....T.....A..T.GC.....T.....GG MW300340.1_Hybognathus_placitus_ A...........TT....CG..A.C..CG.C...T..........T..............A..C.GC.....T..G...G MW300341.1_Hybognathus_placitus_ A...........TT....CG..A.C..CG.C...T..........T..............A..C.GC.....T..G...G NC_013763.1_Mylocheilus_caurinus ....T.G.....A........T..T..CG.C...A..........TG..............C.T..G............. NC_033926.1_Opsopoeodus_emiliae_ ....T.G..GC.AGT...C..T..C..CG.C...T..........C..C.......T...A..T..C..C.T........ NC_037008.1_Notropis_chalybaeus_ ...AT.......A..C..CG.TA.C..CG.C..............T.CC...........A..T.GC.....C....... NC_037009.1_Notropis_heterolepis ...A........A..C..CG.AA.C..AG.C...T..........TGCA...........A..T.GC.....T.....GG NC_037010.1_Rhinichthys_obtusus_ ....T....G..AG.C.....TA.T..CG.....TCT..C.....T...............C.T........C....... NC_037014.1_Notropis_hudsonius_i A..AT.G..G..AGTG..TG.TA.T..CG.C...T..........C..A............C.T.CC...T........G NC_037015.1_Exoglossum_maxilling A..A..T.....A..C........T...G..T..TC.........T..............AC.T..G............. NC_054086.1_Ptychocheilus_lucius A..AT.......AG.C.....T..C...G.C...TC.........T.....T..TT....AC.T..G...........G. NC_054257.1_Gila_cypha_isolate_S A..A........AG.C........C...G.C...TC...C.....T........TT....AC.T..G...........G. NC_054259.1_Gila_nigrescens_isol A...T.......AG.C........C..CG.C...TC.........T........TT....AC.T..G......G....G. NC_054260.1_Hybognathus_amarus_i A..A........A.....CG.TA.T..CG.C..TT..........T.CG...........A..T..C.....T......G NC_054262.1_Notropis_jemezanus_v ....T.......AGTC..CG.TA.C..AG.C...T..........TGCA........G..A..T.GC.....T.....GG Pimephales_notatus_R2S3_________ ...A..G.....A.....CG.TA.C..CG.......C..C.....T.CA.....T.....A..C.CC.....T......G Pimephales_tenellus_tenellu_R2S1 ...AT.......A.T...T..TA.G...G.C...T..........T.CC..T........A..C.CC.....T......G Pimephales_tenellus_parvice_R2S2 A..AT.......A.....T..TA.....G.....T..........T.CC..T........A..T.CC.....T......G Pimephales_notatus_R1S1_________ ...A..G.....A.....CG.TA.C..CG.......C..C.....T.CA.....T.....A..C.CC.....T......G MG570452.1_Pimephales_promelas_i A..AT.......AG....C.....C...G.C............T.T.........T....A..T.CC.....C......G MG570452.1_Pimephales_promelas_S A..AT.......AG....C.....C...G.C............T.T.........T....A..T.CC.....T......G AB626850.1_Megalobrama_terminali CCGGATGAACCATATCCAACTCATATCTGGCCACAGACCCGCTCTCAACCCCCCTTCTAGTACTGACATGCTGACTTCTT AP010779.1_Mylocheilus_caurinus_ ....C.....T.....T.........T....T........CT.A..T.....T.....GA.CT.A...........C..G AP011215.1_Gila_sp._1460_mitocho .T..G.......C...T.GTCT.C....A..A.....T..T.....T...........G...T.A........G...... AP011263.1_Scardinius_erythropht GT..T...G...C...T........CT.A....TC.....CT.G..T.....A...T.G..CT.A..G.....G..C..C AP011267.1_Algansea_lacustris_mi ....G..G..T..G......G.C...T.A...........TT.A...........C..G...T.A...........C... AP011268.1_Yuriria_alta_mitochon .T......G.TTC.......A.C..CT.............CT.A.....A..T...T..A.CT.A........G..C... AP011273.1_Hybognathus_nuchalis_ ..........TTC...A...G.C...T.A...........CT.A.....A..T...T....CT.A........G..C..C AP011274.1_Couesius_plumbeus_mit .A..G...G.T.CC......C.....T.A..............T..T..T......T.....T.A..............C AP011275.1_Platygobio_gracilis_m .G........T..G..T.........T.A.....T..T..CT.A.....A..T...T....CT.A........G.....C AP011277.1_Erimystax_dissimilis_ .......G.TT..G.....T......T.A...........C..A..T..A.....C..G..C..............C..A AP011279.1_Pimephales_promelas_m .T.....G..TTC.......A.C..CT.A..T........C..A.....A..T..CT....TT....G........C..C AP011280.1_Clinostomus_elongatus ..........T..G..T.GT......T.A...........CT.A..T........CT.G..T..............CT.G AP012079.1_Luxilus_chrysocephalu .T......G.TTC.....G.G.C..C..A...........C..A.....A..T...T....CT.A........G..C..C AP012080.1_Macrhybopsis_gelida_m ..........T.................A..T........C........A..............A.....T........A AP012083.1_Notropis_atherinoides .T.....GG.TTCG......G.C..CT.A...........C..A.....A..T...T..C.CT.A...........C..G AP012084.1_Notropis_baileyi_mito .T........TTC......TG.C..CT.A...........CT.A.....T..T...T....CT.A...........C..C AP012087.1_Cyprinella_galactura_ .......GG..TCG......G.C..CT.......C.....CT.G........T...T....C..T..C............ AP012088.1_Hybopsis_lineapunctat ..........TTC.......G.C..CT.A...........C..A.....A..T...T....CT.A...........C..C AP012090.1_Luxilus_cornutus_mito .T......G.TTC.......G.C..CT.A...........CT.A.....A..T...T....CT.A........G..C..C AP012091.1_Lythrurus_ardens_mito ..........TTCG......G.C..CT.A...........CT.G.....A..T..CT....CT.A..T..T..G..C..C AP012092.1_Lythrurus_fumeus_mito ..........TTC...T.GTCTT..CT.A...........CT.A.....A..T...T.G..CT.A..T........C... AP012093.1_Lythrurus_lirus_mitoc ....T.....TTCG......G.C..CT.A...........CT.G.....G..T..C.....CT.A..T.....G..C..C AP012094.1_Lythrurus_umbratilis_ ..........TTCG......G.C..CT.A...........CT.G.....A..T..CT....CT.A..T..T..G..C..C AP012095.1_Macrhybopsis_meeki_mi ..........T..G............T.A..T........C........G..T........C........T........G AP012097.1_Notropis_bifrenatus_m ........G..TC...A...GTC..CT.A..T........TT.G.....A..T..AT....CT.A........G..C..C AP012098.1_Pimephales_sp._MCZunc .T.........TC.......A.C..CT.A...........TT.A.....A..T...T....CT.A............... AP012100.1_Notropis_telescopus_m .T..G......TCC....G.G.C..C..A...G.......CT.A.....A..T..CT....CT.A...........CT.G AP012101.1_Pimephales_notatus_mi ...........TC.......G.C..CT.A...........TT.A.....A..T...T....CT.A............... AP012102.1_Pimephales_vigilax_mi ..........TTC......TG.C..CT.............AT.A.....A......T....CT.A...........C... AP012103.1_Pogonichthys_macrolep .T..G..GG.T.....T..T....................CT.A..T..T..T......A.CT.A..G.....G..C..G AP012106.1_Richardsonius_balteat ..........T.....T.....T...T.A...........CT.A..T........C.....CT....G........CT.A AP012108.1_Notropis_chrosomus_mi .T..G.....TTC......TG.C...T.A.....G.....CT.A........T...T....CT.A...........C..C AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..........TTC......TG.C..CT.............AT.A.....A......T....CT.A...........C... Pimephales_vigilax_R1S3_________ ..........TTC......TG.C..CT.............AT.A.....A......T....CT.A...........C... DQ536429.1_Notropis_stramineus_m .T.......ATTC.......G.C..CT.A...........C..G..G..A..T...T....CT.A..C........C..C JX910141.1_Squaliobarbus_curricu .T.......................C..A...........A..............C.....GT.......T......... KC351187.1_Squaliobarbus_curricu .T.......................C..A...........A..............C.....GT.......T......... KT278765.1_Pimephales_promelas_m .T........TTC.......GTC..CT.A..T........C..A.....A..T..CT....TT.............C..C KT289925.1_Pimephales_promelas_m .T.....G..TTC.......A.C..CT.A..T........C..A.....A..T..CT....TT....G........C..C KT424924.1_Rhinichthys_osculus_m ..........T........TA.....T.A...........C.....T..G..T........TT.A..............C KU200257.1_Chanodichthys_ilishae ............C...............A........T..C..............CT....GT.A.....T........C MF972070.1_Siphateles_bicolor_mo .T..G.......C...T...CT...C.....T.....T..T.....C...........G...T.A........G..C..C MG570407.1_Notropis_chalybaeus_v .T..G......TC...T..TA.C..CT.A..T........C..A.....G..T...T....CT.A...........C..C MG570408.1_Notropis_bifrenatus_v .T......G..TC...A...G.C..CT.A..T........TT.G.....A..T..AT....CT.A........G..C..C MG570413.1_Notropis_heterolepis_ .T..C.....TTC...T..TA.C..CT.A...........CT.A.....A..T...T....CT.A........G..C..C MG570416.1_Rhinichthys_obtusus_v ..........T.C............CT....T........CT.G..T..G..T.....G..C..A..............A MG570417.1_Rhinichthys_obtusus_v ..........T.C............CT....T........CT.G..T..G..T.....G..C..A..............A MG570420.1_Pimephales_notatus_vo .T.........TC.......A.C..CT.A...........TT.A.....A..T...T....CT.A............... MG570443.1_Notropis_hudsonius_is ....G.....T.....T..TG.C...T.A...........CT.A.....A..G........C..A...........C..C MG570444.1_Rhinichthys_atratulus ..........T.C.............T....T........C..A..T..G........G..C..A..............G MG570445.1_Rhinichthys_atratulus ..........T.C.............T....T........C..A..T..G........G..C..A..............G MG570447.1_Luxilus_cornutus_isol .T..G...G.TTC.......G.C..CT.A...........CT.A.....A..T...T....CT..........G..C..C MG570449.1_Luxilus_cornutus_isol .T......G.TTC.......G.C..CT.............CT.A.....A..T...T....CT..........G..C..C MG570450.1_Pimephales_notatus_is .T.........TC.......A.C..CT.A...........TT.A.....A..T...T....CT.A............... MG570451.1_Notropis_bifrenatus_i .T......G..TC...A...G.C..CT.A..T........TT.G.....A..T..AT....CT.A........G..C..C MG570453.1_Exoglossum_maxillingu .......G.TT..G.....T......T.A...........C..A..T..A.....C..G..C..............C..A MG570454.1_Pimephales_promelas_i .T.....G..TTC.......A.C..CT.A..T........C..A.....A..T..CT....TT....G........C..C MG570455.1_Notropis_atherinoides .T.....GG.TTCG......G.C..CT.A...........C..A.....A..T...T....CT.A...........C..G MG570456.1_Notropis_atherinoides .T.....GG.TTCG......G.C..CT.A...........C..A.....A..T...T....CT.A...........C..G MG570457.1_Pimephales_notatus_is .T.........TC.......A.C..CT.A...........TT.A.....A..T...T....CT.A............... MG570458.1_Pimephales_notatus_is .T.........TC.......A.C..CT.A...........TT.A.....A..T...T....CT.A............... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .T......G.TTC......TA.C..CT.A...........C..A........T...T....CT.A...........C..C MT364325.1_Hybognathus_amarus_mi ....G..G..TTC...A...A.C...T.A...........C..G..G..A..T...T.G..CT.A........G..C..C MT501368.1_Gila_cypha_isolate_SN .T..........CG..T..TCTG........A.....T..T.....T...........G...T.A........G..C... MT501369.1_Notropis_simus_pecose ..........TTC.....GTG.C..CT.....G.......CT.A.....A..T..AT....TT.A...........A..C MT501378.1_Hybognathus_amarus_is ....G..G..TTC...A...A.C...T.A...........C..G..G..A..T...T.G..CT.A........G..C..C MT501385.1_Notropis_jemezanus_vo .T.....GG.TTCG....G.G.C..CT.A...........C..A.....A..T...T....CT.A...........C..A MT501391.1_Rhinichthys_osculus_i .......G..T........TA.G...T.............C.....T..G..T........CT..........G.....G MT667239.1_Rhinichthys_osculus_t .......G..T........TA.G...T.............C.....T..G..T........CT.A..............G MT667242.1_Luxilus_cornutus_vouc .T......G.TTC.......G.C..CT.A...........CT.A.....A..T...T....CT..........G..C..C MW300340.1_Hybognathus_placitus_ .T........TTC.....G.G.C...T....T........C..A.....A..T...T.G..CT.A........G..C..C MW300341.1_Hybognathus_placitus_ .T........TTC.....G.G.C...T....T........C..A.....A..T...T.G..CT.A........G.....C NC_013763.1_Mylocheilus_caurinus ....C.....T.....T.........T....T........CT.A..T.....T.....GA.CT.A...........C..G NC_033926.1_Opsopoeodus_emiliae_ ..........TTC.A...G...C...T.............C..A............T....CT.A..G........C... NC_037008.1_Notropis_chalybaeus_ .T..G......TC...T..TA.C..CT.A..T........C..A.....G..T...T....CT.A...........C..C NC_037009.1_Notropis_heterolepis .T..C.....TTC...T..TA.C..CT.A...........CT.A.....A..T...T....CT.A........G..C..C NC_037010.1_Rhinichthys_obtusus_ ..........T.C............CT....T........CT.G..T..G..T.....G..C..A..............A NC_037014.1_Notropis_hudsonius_i ....G.....T.....T..TG.C...T.A...........CT.A.....A..G........C..A...........C..C NC_037015.1_Exoglossum_maxilling .......G.TT..G.....T......T.A...........C..A..T..A.....C..G..C..............C..A NC_054086.1_Ptychocheilus_lucius .T..G.......C...T..TCT...C..A..G........T.....T...........G...T.A........G..C... NC_054257.1_Gila_cypha_isolate_S .T..........CG..T..TCTG........A.....T..T.....T...........G...T.A........G..C... NC_054259.1_Gila_nigrescens_isol .T..G......GC...T..TCTG.....A..A.....T..T.....T...........G...T.A........G..C... NC_054260.1_Hybognathus_amarus_i ....G..G..TTC...A...A.C...T.A...........C..G..G..A..T...T.G..CT.A........G..C..C NC_054262.1_Notropis_jemezanus_v .T..G..GG.TTCG....G.G.C..CT.A...........C..A.....G..T...T....CT.A...........C..A Pimephales_notatus_R2S3_________ .T..G......TCT.....TA.C..C..A...........TT.A.....A..T..CT....C..A............... Pimephales_tenellus_tenellu_R2S1 .........TTTC.......A.C..CT.A...........CT.A.....A..T..CT....CT.A..............C Pimephales_tenellus_parvice_R2S2 .........TTTC.......A.C..CT.A...........C..A.....A..T..CT....CT.A..............C Pimephales_notatus_R1S1_________ .T..G......TCT.....TA.C..C..A...........TT.A.....A..T..CT....C..A............... MG570452.1_Pimephales_promelas_i .T.....G..TTC.......A.C..CT.A..T........C..A.....A..T..CT....TT.A..G........C..C MG570452.1_Pimephales_promelas_S .T.....G..TTC.......A.C..CT.A..T........C..A.....A..T..CT....TT....G........C..C AB626850.1_Megalobrama_terminali CCATTAATAATTTTAGCCAGTCAAAACCATGTCAACCCCGAACCTATCAGCCGACAACGTTTATACATCACCCTCCTCAC AP010779.1_Mylocheilus_caurinus_ ..C..G..G...C..........G......A.T.....T..G..A..T.....G.....CC.C........A.....A.. AP011215.1_Gila_sp._1460_mitocho ..CC....G..CC.......C..G.....C.....TT.T..G..A........G.....CC.C..T..T.TA..T..T.. AP011263.1_Scardinius_erythropht ..TC..........G..T..C.........A.T.....A..G..AG.A.....G..G..CC.T..T..T..A......G. AP011267.1_Algansea_lacustris_mi ..C.....G........T..C...........T.G...T........TGCA..C..G..CC.C..T..T..A..T..T.. AP011268.1_Yuriria_alta_mitochon ..CC....G..C........C.....T..CA.T.....T.....A..TGCA..T.....CC....T..T..A..T..T.. AP011273.1_Hybognathus_nuchalis_ ..T........C..................A.T.....T.....C..TGCA..T.....CC....T.....A..T..... AP011274.1_Couesius_plumbeus_mit ..CC....G..C..G.....C..G......A....T...C....A..TGC.........CC.C..T..T.....T...G. AP011275.1_Platygobio_gracilis_m ..C........C..G..T..C..G.....CA.......T..G.......CA..T.....CC.T.....T..A.....G.. AP011277.1_Erimystax_dissimilis_ ..C.....G.....G..T.....G..T...A.T.....T..G..A..T.A.........CC.C........A..T..A.. AP011279.1_Pimephales_promelas_m ..CC................C.........A.T...........CC.TGCA..T.....CC.G..T...T.A.....T.. AP011280.1_Clinostomus_elongatus ..C.................C...........A.....T..G..A..T.A...G..G..CC.C..T..T..A..T..A.. AP012079.1_Luxilus_chrysocephalu ..C........C........C.........A.T.....A..G..C..TGCA..T..G..CC.G..T..T..A..T..... AP012080.1_Macrhybopsis_gelida_m ..C........C.....T..C.........A.T..T..T.....A..T.CA..C.....CC.T........A.....G.. AP012083.1_Notropis_atherinoides ..C........C.....T..C..G.....CA.......T..G..C..TGCA..T..G..CC.......T.....T..... AP012084.1_Notropis_baileyi_mito ..C.....G.....G.....C.........A.TG.T..G.....C..TGCA..T.....CC.......T..A..T..TG. AP012087.1_Cyprinella_galactura_ ..C........C........C........CA..G....T......G.TGCA..C.....A..G...........G..... AP012088.1_Hybopsis_lineapunctat ..CC.......C..G.....C.........A.T.....G.....C...GCA..C.....CC.G..T..T..A..T..... AP012090.1_Luxilus_cornutus_mito ..C........C..G.....C.........A.T.....A.....C..TGCA..T......C.C..T..T..A..T..... AP012091.1_Lythrurus_ardens_mito ..T...........G.....C..G.....CA.T..T..T.....C..TGCA..T.....CC..........A..T..... AP012092.1_Lythrurus_fumeus_mito ..CC..........G.....C........CA.T..T..T.....C..TGCG..T.....CC....T..T..G..T..... AP012093.1_Lythrurus_lirus_mitoc ..C...........G.....C........CA.T.....T.....C..TGCA..T.....CC.......T..G..T...G. AP012094.1_Lythrurus_umbratilis_ ..T...........G.....C..G.....CA.T..T..T.....C..TGCA..T.....CC..........G..T..... AP012095.1_Macrhybopsis_meeki_mi ..C........C.....T..C.........A.T..T..T........TGCA..C.....CC.T........A...T.A.. AP012097.1_Notropis_bifrenatus_m ..C.....G..C.....T..C.........A.T........G..C..TGCA..T.....CC....T..T..A..T..... AP012098.1_Pimephales_sp._MCZunc ..CC.G.....C.....T..C.....T...A.......G.....C..TGCA..T.....CC..........A..T..... AP012100.1_Notropis_telescopus_m ..C.................C........CA.T.....T.....C...GCA..T..G...C..........A..T..T.. AP012101.1_Pimephales_notatus_mi ..CC.G.....C.....T..C.....T...A.......G.....C..TGCA..T.....CC.G........A..T..... AP012102.1_Pimephales_vigilax_mi ..C........C.....T........T...A.T.....T..G...G.TGCA..C.....CC.......T..A..T..T.. AP012103.1_Pogonichthys_macrolep ..C.........C..........G.....CA.......T..G..G..T...........CC.T.....T..A.....A.. AP012106.1_Richardsonius_balteat ..CC....G...........C........CA.......T..G..A..T........G..CC.C.....T..A..T..A.. AP012108.1_Notropis_chrosomus_mi ..C.................C........CA.T.....T.....C..TGCA..T.....CC.G..T..TT.A..T..T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..C........C.....T........T...A.T.....T..G...G.TGCA..C.....CC.......T..A..T..T.. Pimephales_vigilax_R1S3_________ ..C........C.....T........T...A.T.....T..G...G.TGCA..C.....CC.......T..A..T..T.. DQ536429.1_Notropis_stramineus_m ..GC.C..G.....G..T.....G.....CA.T..T..T.....C..TGCA..T.....CC.G..T..T.....T..... JX910141.1_Squaliobarbus_curricu ...C........C.......C........CA....T..A.....AGC............C........T..A.....T.. KC351187.1_Squaliobarbus_curricu ...C........C.......C........CA....T..A.....AGC............C........T..A.....T.. KT278765.1_Pimephales_promelas_m ..CC................C.........A.T...........C..TGCA..T.....CC.G..T...T.A..T..T.. KT289925.1_Pimephales_promelas_m ..CC................C.........A.T...........CC.TGCA..T.....CC.G..T...T.A.....T.. KT424924.1_Rhinichthys_osculus_m ..C.................C........CA.......G.....GG.T.A...G..G...C....T..T..A..TT.A.. KU200257.1_Chanodichthys_ilishae .....G......C.......C........C..T.....A......G.........................T........ MF972070.1_Siphateles_bicolor_mo ..C.................C..G.....C.....TT.T..G..AG.......G..G..CC.C..T..T.TG..T..T.. MG570407.1_Notropis_chalybaeus_v ..C........C.....T..C.........A.T.....T........T.CA..T.....CC....T..T..A..T..T.. MG570408.1_Notropis_bifrenatus_v ..C.....G..C.....T..C.........A.T........G..C..TGCA..T.....CC....T..T..A..T..... MG570413.1_Notropis_heterolepis_ ..C........CC.......C.....T..CA.T...........C...GCA..T.....CC.......T..A..T..... MG570416.1_Rhinichthys_obtusus_v ..C.....G.....G.....C.........A.T........G..G..............CC.G........A.....G.. MG570417.1_Rhinichthys_obtusus_v ..C.....G.....G.....C.........A.T........G..G..............CC.G........A.....G.. MG570420.1_Pimephales_notatus_vo ..CC.G.....C.....T..C.....T...A.......G.....C..TGCA..T.....CC..........A..T..... MG570443.1_Notropis_hudsonius_is ..G...........G..T..C.....T...A.T........G..C..TGCA..T..G..CC....T..T..A..T..T.. MG570444.1_Rhinichthys_atratulus ..C...T.G...........C...........T........G..A...........G..CC.G........A..A..G.. MG570445.1_Rhinichthys_atratulus ..C...T.G...........C...........T........G..A...........G..CC.G........A..A..G.. MG570447.1_Luxilus_cornutus_isol ..C........C..G.....C.........A.T.....A.....C..TGCA..T......C.C..T..T..A..T..... MG570449.1_Luxilus_cornutus_isol ..C........C..G.....C.........A.T.....A.....C..TGCA..T......C.C..T..T..A..T..... MG570450.1_Pimephales_notatus_is ..CC.G.....C.....T..C.....T...A.......G.....C..TGCA..T.....CC..........A..T..... MG570451.1_Notropis_bifrenatus_i ..C.....G..C.....T..C.........A.T........G..C..TGCA..T.....CC....T..T..A..T..... MG570453.1_Exoglossum_maxillingu ..C.....G.....G..T.....G..T...A.T.....T..G..A..T.A.........CC.C........A..T..A.. MG570454.1_Pimephales_promelas_i ..CC................C.........A.T...........CC.TGCA..T.....CC.G..T...T.A.....T.. MG570455.1_Notropis_atherinoides ..C........C.....T..C..G.....CA.......T..G..C..TGCA..T..G..CC.......T.....T..... MG570456.1_Notropis_atherinoides ..C........C.....T..C..G.....CA.......T..G..C..TGCA..T..G..CC.......T.....T..... MG570457.1_Pimephales_notatus_is ..CC.G.....C.....T..C.....T...A.......G.....C..TGCA..T.....CC..........A..T..... MG570458.1_Pimephales_notatus_is ..CC.G.....C.....T..C.....T...A.......G.....C..TGCA..T.....CC..........A..T..... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..CC........C.......C.........A.T.....T........T.CA..C.....CC.C..T.....A..T..T.. MT364325.1_Hybognathus_amarus_mi ..C........C..................A.T.....T.....C..TGCA..T.....CC....T.....A..T..... MT501368.1_Gila_cypha_isolate_SN ..CC....G...C.......C..G..T..C.....TT.T..G..A........G.....CC.C..T..T.TA..T..T.. MT501369.1_Notropis_simus_pecose ..C.....G..C..G.....C.........A.T.....T......G..GCA..C.....CC..........T..T..T.. MT501378.1_Hybognathus_amarus_is ..C........C..................A.T.....T.....C..TGCA..T.....CC....T.....A..T..... MT501385.1_Notropis_jemezanus_vo ..C........C..G..T..C........CA.......T..G..C..TGCG..T..G..CC.G.....T.....T..... MT501391.1_Rhinichthys_osculus_i ..C.....G.....G..T..C........CA......TT..G..AG.T.....G..G...C....T..T..G..TT.A.. MT667239.1_Rhinichthys_osculus_t ..C.....G.....G..T..C........CA......TT..G..AG.T.....G..G...C....T..T..G..TT.A.. MT667242.1_Luxilus_cornutus_vouc ..C........C..G.....C.........A.T.....A.....C..TGCA..T......C.C..T..T..A..T..... MW300340.1_Hybognathus_placitus_ ..C.....G..C..................A.T..T..T.....C..T.CA..T.....CC....T..T..A..T..... MW300341.1_Hybognathus_placitus_ ..C.....G..C..................A.T..T..T.....C..T.CA..T.....CC....T..T..A..T..... NC_013763.1_Mylocheilus_caurinus ..C..G..G...C..........G......A.T.....T..G..A..T.....G.....CC.C........A.....A.. NC_033926.1_Opsopoeodus_emiliae_ ..C.........C.......C..G..T...A.T.....T..G.....TGCA..C..G..CC.C........A..T..T.. NC_037008.1_Notropis_chalybaeus_ ..C........C.....T..C.........A.T.....T........T.CA..T.....CC....T..T..A..T..T.. NC_037009.1_Notropis_heterolepis ..C........CC.......C.....T..CA.T...........C...GCA..T.....CC.......T..A..T..... NC_037010.1_Rhinichthys_obtusus_ ..C.....G.....G.....C.........A.T........G..G..............CC.G........A.....G.. NC_037014.1_Notropis_hudsonius_i ..G...........G..T..C.....T...A.T........G..C..TGCA..T..G..CC....T..T..A..T..T.. NC_037015.1_Exoglossum_maxilling ..C.....G.....G..T.....G..T...A.T.....T..G..A..T.A.........CC.C........A..T..A.. NC_054086.1_Ptychocheilus_lucius ..CC................C..G..T..CA....TT.T.....A..T.....G..G..CC.C.......TG..T..T.. NC_054257.1_Gila_cypha_isolate_S ..CC....G...C.......C..G..T..C.....TT.T..G..A........G.....CC.C..T..T.TA..T..T.. NC_054259.1_Gila_nigrescens_isol ..CC....G..C........C..G..T..C.....TT.T.....A...G....G..G..CC.C..T....TA..T..T.. NC_054260.1_Hybognathus_amarus_i ..C........C..................A.T.....T.....C..TGCA..T.....CC....T.....A..T..... NC_054262.1_Notropis_jemezanus_v ..C........C..G..T..C........CA.......T..G..C..TGCG..T..G..CC.G.....T.....T..... Pimephales_notatus_R2S3_________ ..C..G.....C..G.....C.....T...A.............C..TGCA..T.....CC..........T..T..... Pimephales_tenellus_tenellu_R2S1 ..T.................C........CA.T.....T.....C..TGCA..T.....CC.C..T..T..A..T..... Pimephales_tenellus_parvice_R2S2 ..C.................C........CA.T.....T..G..C..TGCA..T.....CC.C..T..T..A..T..... Pimephales_notatus_R1S1_________ ..C..G.....C..G.....C.....T...A.............C..TGCA..T.....CC..........A..T..... MG570452.1_Pimephales_promelas_i ..CC................C.........A.T...........CC.TGCA..T.....CC.G..T...T.A.....T.. MG570452.1_Pimephales_promelas_S ..GC................C.........A.T...........CC.TGCA..T.....CC.G..T...T.A.....T.. AB626850.1_Megalobrama_terminali CTCACTACAAACTTTCCTAATTATAGCATTCGGTGCCACCGAAATTATTATATTTTATATTATATTCGAAGCCACACTTA AP010779.1_Mylocheilus_caurinus_ .........G..............G..T.....C.....A.....C..C.....C..C..C.....T............. AP011215.1_Gila_sp._1460_mitocho ......C...........G....................A........C..G..C...........T..G.....G.... AP011263.1_Scardinius_erythropht T..G..C..G..C........C..G..C...........A...........G...........G..T..G.......... AP011267.1_Algansea_lacustris_mi ....T.G.....C...........G..C.....C.....A.....C...........C..C.....T..G.....C..C. AP011268.1_Yuriria_alta_mitochon ......G...G.G..............C.....C.....A..G..C..C........C........T........C.... AP011273.1_Hybognathus_nuchalis_ T.........G.....T..........C.....C.....A..G..C..C.....C..C........T........C.... AP011274.1_Couesius_plumbeus_mit ....T....G..C..T.................A.....A.....C..C.................T..G........C. AP011275.1_Platygobio_gracilis_m ..........G.A..............C.....C.....A.....C..C..............G..T........T..C. AP011277.1_Erimystax_dissimilis_ ...G......G.A..............C..T..C.....A.....C..C..G..C........G..T..G.......... AP011279.1_Pimephales_promelas_m ..........G....TT.......G..C..T..C.....A.....C.....G..............T........C.... AP011280.1_Clinostomus_elongatus ......C...G.............G..C..T..C.....A..G..C..C.....C.....C.....T.....T....... AP012079.1_Luxilus_chrysocephalu T........GG.......C.....G..C..T..C..T..A.....C....................T........C..C. AP012080.1_Macrhybopsis_gelida_m ...TT.......C..TT..........C...........A..........................T........T..C. AP012083.1_Notropis_atherinoides T........GG....TT.G.....G..C..T..G.....A.....C.....G........C.....T........C..C. AP012084.1_Notropis_baileyi_mito T..........................C.....A.....A.....C..C.................T........T.... AP012087.1_Cyprinella_galactura_ T...T....G......T.G..C..G..T..T........A.....C.....G........C..G..T..G.....T..C. AP012088.1_Hybopsis_lineapunctat T........GG....TT.......G..C..T..C.....A.....C.....G.....C........T........C.... AP012090.1_Luxilus_cornutus_mito T.........G..........C.....C.....C.....A...........G.....C........T........C..C. AP012091.1_Lythrurus_ardens_mito .........GG.C..T........G..C.....C.....A........C.................T..G..G..C.... AP012092.1_Lythrurus_fumeus_mito ....T.G..GG....TT..G.C..G..C.....C.....A.....C..C........C..C.....T........T.... AP012093.1_Lythrurus_lirus_mitoc ......G..GG....T........G..C.....C.....A........C..G..............T..G..G..T..C. AP012094.1_Lythrurus_umbratilis_ .........GG.C..T........G..C.....C.....A........C.................T..G..G..C.... AP012095.1_Macrhybopsis_meeki_mi ...CT.......C..TT.G........C...........A.....C....................T........T..C. AP012097.1_Notropis_bifrenatus_m T.....C..GG.............G..C.....C.....A.....C.....G.....C.....G..T........T..C. AP012098.1_Pimephales_sp._MCZunc T..G......G.....T..........C..T..C.....A.....C...........C..C.....T........T..C. AP012100.1_Notropis_telescopus_m T........GG....TT..........C.....C.....G.....C...........C........T........C.... AP012101.1_Pimephales_notatus_mi T..G......G.....T..........C..T..C.....A.....C...........C........T........T..C. AP012102.1_Pimephales_vigilax_mi T..G..C..G.....TT.G.....G..C..TA.C.....A.....C...........C........T........T..C. AP012103.1_Pogonichthys_macrolep .........G.................T.....C.....G..G..C....................T............. AP012106.1_Richardsonius_balteat ......C...........G.....G..T.....C.....A.....C..C.....C........G..T..G.....G..C. AP012108.1_Notropis_chrosomus_mi T...T....G......T.......G..C.....C.....A........C.................T........T.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T..G..C..G.....TT.G.....G..C..TA.C.....A.....C...........C........T........T..C. Pimephales_vigilax_R1S3_________ T..G..C..G.....TT.G.....G..C..TA.C.....A.....C...........C........T........T..C. DQ536429.1_Notropis_stramineus_m T.....C...G.C...T.G.....G..C..T..C..T..A.....C..C.....C..C.....G.....G.....C..C. JX910141.1_Squaliobarbus_curricu ............C..T.......................T.....C........C..C........T.....T.....C. KC351187.1_Squaliobarbus_curricu ............C..T.......................T.....C........C..C........T.....T.....C. KT278765.1_Pimephales_promelas_m ...T......G....TT.G.....G..C..T..C.....A.....C...........C........T........T.... KT289925.1_Pimephales_promelas_m ...T......G....TT.G.....G..C..T..C.....A.....C...........C........T........C.... KT424924.1_Rhinichthys_osculus_m ...C..C..............C..G..C.....C.....A..G..C..C...........C.....T........G..A. KU200257.1_Chanodichthys_ilishae ............C..T........G........C..........................C.....T........G..C. MF972070.1_Siphateles_bicolor_mo ......C..............C...........C..T..A..G.....C..G..C.....C..G..T........G.... MG570407.1_Notropis_chalybaeus_v T...........C...T....C.....C.....C.....A.....C..C...........C.....T........T.... MG570408.1_Notropis_bifrenatus_v T.....C..GG.............G..C.....C.....A.....C.....G.....C.....G..T........T..C. MG570413.1_Notropis_heterolepis_ T.....G.........T.......G..C.....C.....A.....C..C........C........T........T..C. MG570416.1_Rhinichthys_obtusus_v .........G.................T.....C.....A..........................T........G.... MG570417.1_Rhinichthys_obtusus_v .........G.................T.....C.....A..........................T........G.... MG570420.1_Pimephales_notatus_vo T..G......G.....T..........C..T..C.....A.....C...........C..C.....T........T..C. MG570443.1_Notropis_hudsonius_is ...C..G...G..........C..G..C.....C.....A.....C.....G.....C........T........T.... MG570444.1_Rhinichthys_atratulus ....T....G...........C..G..C.....C.....A..............C...........T........G.... MG570445.1_Rhinichthys_atratulus ....T....G...........C..G..C.....C.....A..............C...........T........G.... MG570447.1_Luxilus_cornutus_isol T.........G..........C.....C.....C.....A...........G.....C.....G..T........C..C. MG570449.1_Luxilus_cornutus_isol T.........G..........C.....C.....C.....A...........G.....C.....G..T........C..C. MG570450.1_Pimephales_notatus_is T..G......G.....T..........C..T..C.....A.....C...........C..C.....T........T..C. MG570451.1_Notropis_bifrenatus_i T.....C..GG.............G..C.....C.....A.....C.....G.....C.....G..T........T..C. MG570453.1_Exoglossum_maxillingu ...G......G.A..............C..T..C.....A.....C..C..G..C........G..T..G.......... MG570454.1_Pimephales_promelas_i ...T......G....TT.G.....G..C..T..C.....A.....C...........C........T........C.... MG570455.1_Notropis_atherinoides T........GG....TT.G.....G..C..T..G.....A.....C.....G........C.....T........T..C. MG570456.1_Notropis_atherinoides T.....G..GG....TT.G.....G..C..T..G.....A.....C.....G........C.....T........C..C. MG570457.1_Pimephales_notatus_is T..G......G.....T..........C..T..C.....A.....C...........C..C.....T........T..C. MG570458.1_Pimephales_notatus_is T..G......G.....T..........C..T..C.....A.....C...........C..C.....T........T..C. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v T...............T.......G..T.....C..T..A........C.................T..G.....C..C. MT364325.1_Hybognathus_amarus_mi T...T.....G.....T.G........T.....C.....A.....C..C.....C..C..C.....T........T..C. MT501368.1_Gila_cypha_isolate_SN ......C..........................C.....A........C..G..C...........T........G.... MT501369.1_Notropis_simus_pecose T........G..C...T.G........C.....C.....A..G..C..C..G..C..C..C.....T........T..C. MT501378.1_Hybognathus_amarus_is T...T.....G.....T.G........T.....C.....A.....C..C.....C..C..C.....T........T..C. MT501385.1_Notropis_jemezanus_vo T.....T..GG.....T.G.....G..C.....G.....A.....C.....G........C.....T........T..C. MT501391.1_Rhinichthys_osculus_i ..........G.......G..CC.G..T.....C.....A.....C..C.....C........G..T..G.....G..G. MT667239.1_Rhinichthys_osculus_t ..........G.......G..CC.G..T.....C.....A..G..C..C.....C........G..T..G.....G..G. MT667242.1_Luxilus_cornutus_vouc T.........G..........C.....C.....C.....A...........G.....C.....G..T........C..C. MW300340.1_Hybognathus_placitus_ T..GT.G...G.....T.......G..C.....C.....A..G..C..C..G..C..C........T........T..C. MW300341.1_Hybognathus_placitus_ T..GT.G...G.....T.....T.G..C.....C.....A..G..C..C..G..C..C........T........T..C. NC_013763.1_Mylocheilus_caurinus .........G..............G..T.....C.....A.....C..C.....C..C..C.....T............. NC_033926.1_Opsopoeodus_emiliae_ A..TT....GG.C...T..........C..T.....T..A.....C.................G..T........C.... NC_037008.1_Notropis_chalybaeus_ T...........C...T....C.....C.....C.....A.....C..C...........C.....T........T.... NC_037009.1_Notropis_heterolepis T.....G.........T.......G..C.....C.....A.....C..C........C........T........T..C. NC_037010.1_Rhinichthys_obtusus_ .........G.................T.....C.....A..........................T........G.... NC_037014.1_Notropis_hudsonius_i ...C..G...G..........C..G..C.....C.....A.....C.....G.....C........T........T.... NC_037015.1_Exoglossum_maxilling ...G......G.A..............C..T..C.....A.....C..C..G..C........G..T..G.......... NC_054086.1_Ptychocheilus_lucius ......C...........G............A.C.....A........C..G..C.....C.....T........G.... NC_054257.1_Gila_cypha_isolate_S ......C..........................C.....A........C..G..C...........T........G.... NC_054259.1_Gila_nigrescens_isol ......C..........................C.....A..G.....C..G..C.....C.....T........G.... NC_054260.1_Hybognathus_amarus_i T...T.....G.....T.G........T.....C.....A.....C..C.....C..C..C.....T........T..C. NC_054262.1_Notropis_jemezanus_v T.....T..GG.....T.G.....G..C.....G.....A.....C.....G........C.....T........T..C. Pimephales_notatus_R2S3_________ T.........G.....T.......G..C..T..C.....A.....C........C..C........T........T.... Pimephales_tenellus_tenellu_R2S1 ................T..........T..T..C.....A.....C..C.................T........T.... Pimephales_tenellus_parvice_R2S2 ................T..........T..T..C.....A.....C..C.................T........T.... Pimephales_notatus_R1S1_________ T.........G.....T.......G..C..T..C.....A.....C........C..C........T........T.... MG570452.1_Pimephales_promelas_i ...TT.....G....TT.G.....G..C..T..C.....A.....C...........C........T........T.... MG570452.1_Pimephales_promelas_S ..........G....TT.......G..C..T..C.....A.....C....................T........C.... AB626850.1_Megalobrama_terminali TCCCAACCCTTATTATTATCACCCGATGAGGAAACCAAACTGAACGCCTCAACGCGGGAACCTACTTCCTATTCTACACA AP010779.1_Mylocheilus_caurinus_ ...................T.....G.....C...................G...A..C........T..G..T..T..T AP011215.1_Gila_sp._1460_mitocho .........................G..G..T..T..G.............G...A..T.....T..T..G..T..T..C AP011263.1_Scardinius_erythropht ....T.....C........T..T........T...................G...A.................T..T..C AP011267.1_Algansea_lacustris_mi ....C........C........T..C.............................A..T.........T....T..T..T AP011268.1_Yuriria_alta_mitochon ....T.....C..C.....T.....C..G..T..T.....G..........G...A..T.....T..TT.......T..C AP011273.1_Hybognathus_nuchalis_ ....T........C..C........T........T.....C.................T.....T..TT....T..T..T AP011274.1_Couesius_plumbeus_mit .............C..C.....A........T........C..........G...A..T...........G..T..T..C AP011275.1_Platygobio_gracilis_m ....C..............T..T..C..G.....T........G...........A...........T.....T.....C AP011277.1_Erimystax_dissimilis_ .T..C..............T.....C..G..T..T..G.............G...A..C........T.....T.....C AP011279.1_Pimephales_promelas_m .T..T..A.....C.....T.....C........T.....C..............A..T.....T..TT..........C AP011280.1_Clinostomus_elongatus .......T..C..C.....T...........T..............T........A..T..T.....T..G..T..T..T AP012079.1_Luxilus_chrysocephalu ....C........C.....T..T..T.....G..T.....C..............A..T.....T..TT..........T AP012080.1_Macrhybopsis_gelida_m .............C.....T..T..C.....T..T...G.C..............A..T.TT......T.......T..C AP012083.1_Notropis_atherinoides ....C.....C..C..C..T.....C..G..T..T..G....................T.....T..TT....T..T..T AP012084.1_Notropis_baileyi_mito .T..C..T.....C..C........C........T..G..C..G...........A..T.....T..TT....T..T..T AP012087.1_Cyprinella_galactura_ ....C......G.......T.....C..G..G..T.....C..G.....T.....A..T.....T..TT....T..T... AP012088.1_Hybopsis_lineapunctat ....T....................C..............C..............A..T.....T........T..T... AP012090.1_Luxilus_cornutus_mito ....T.....C........T.....T..G..T..T.....C..G..............T.....T...T....T..T..T AP012091.1_Lythrurus_ardens_mito ....T....................C........T.....C..G.......G...A..T..............T.....C AP012092.1_Lythrurus_fumeus_mito .T..C.....A.................G...........C..............A..T.....T...T....T.....C AP012093.1_Lythrurus_lirus_mitoc ....T........C.....T.....C........T.....C..........G...A..C..T......T....T..T... AP012094.1_Lythrurus_umbratilis_ ....T....................C........T.....C..G.......G...A..T..............T..T..C AP012095.1_Macrhybopsis_meeki_mi ...................T..T..C.....T..T...G.C........T.....A..T.........T.......T..T AP012097.1_Notropis_bifrenatus_m .T..T..T..C........T.....C........T....................A..T.....T..TT....T..T... AP012098.1_Pimephales_sp._MCZunc .T..T..T........C..T.....C.....T..T.....C........T.....A..T........TT....T..T..C AP012100.1_Notropis_telescopus_m ....C..............T.....C........T.....C...........T..A..T..T.....TT..........T AP012101.1_Pimephales_notatus_mi .T..T..T........C..T.....C.....T..T.....C........T.....A..T........TT....T..T..C AP012102.1_Pimephales_vigilax_mi ....T..A...........T.....C.....G..T.....C...........T..A..C........TT....T.....T AP012103.1_Pogonichthys_macrolep ..........C.....C..T...........T.....G.............G......C........TT.G..T..T..T AP012106.1_Richardsonius_balteat .......T.................G.....C..............T........A..T........T.....T..T..C AP012108.1_Notropis_chrosomus_mi ....T...........C.....T..C........T.....C........T........T.....T..TT....T..T..C AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....T..A...........T.....C.....G..T.....C...........T..A..C........TT....T.....T Pimephales_vigilax_R1S3_________ ....T..A...........T.....C.....G..T.....C...........T..A..C........TT....T.....T DQ536429.1_Notropis_stramineus_m ....T..............T.....C........T.....C..............A..C.....T..TT....T..T..T JX910141.1_Squaliobarbus_curricu .............C..C..T.................G..C........T..T..A...........T..G.....T..C KC351187.1_Squaliobarbus_curricu .............C..C..T.................G..C........T..T..A...........T..G.....T..C KT278765.1_Pimephales_promelas_m .T..T..A.................C........T.....C.....T........A..T.....T..TT..........C KT289925.1_Pimephales_promelas_m .T..T..A...........T.....C..............C..............A..T.....T..TT..........C KT424924.1_Rhinichthys_osculus_m ....G..............T.....G..G..T..T................G...A..T........T..G..T..T..T KU200257.1_Chanodichthys_ilishae ...................T....................C...........T..A..G.....T..T...........C MF972070.1_Siphateles_bicolor_mo ................C........G.....C..T..G.....G.......G...A..T.....T..T..G..T..T..C MG570407.1_Notropis_chalybaeus_v ....T..T...........T.....T.....G..T.....C........T.....A..T.....T..TT.G..T..T..T MG570408.1_Notropis_bifrenatus_v .T..T..T..C........T.....C........T....................A..T.....T..TT....T..T... MG570413.1_Notropis_heterolepis_ ....C.....C..C.....T.....T..............C..............A..T.....T........T..T..T MG570416.1_Rhinichthys_obtusus_v ....C..............T.....C.....T...........G.......G...A..T........T.....T.....C MG570417.1_Rhinichthys_obtusus_v ....C..............T.....C.....T...........G.......G...A..T........T.....T.....C MG570420.1_Pimephales_notatus_vo .T..T..T........C..T.....C.....T..T.....C........T.....A..T........TT....T..T..C MG570443.1_Notropis_hudsonius_is .T..C..T...........T..T..C.....T..T.....C........G.....A..T.....T...T....T..T..T MG570444.1_Rhinichthys_atratulus ....C.....C........T...........T...........G.......G...A..T........T.....T..T..C MG570445.1_Rhinichthys_atratulus ....C.....C........T...........T...........G.......G...A..T........T.....T..T..C MG570447.1_Luxilus_cornutus_isol ....T.....C........T.....T..G..C..T.....C..G..............T.....T...T....T..T..T MG570449.1_Luxilus_cornutus_isol ....T.....C........T.....T..G..C..T.....C..G..............T.....T...T....T..T..T MG570450.1_Pimephales_notatus_is .T..T..T........C..T.....C.....T..T.....C........T.....A..T........TT....T..T..C MG570451.1_Notropis_bifrenatus_i .T..T..T..C........T.....C........T....................A..T.....T..TT....T..T... MG570453.1_Exoglossum_maxillingu .T..C..............T.....C..G..T..T..G.............G...A..C........T.....T.....C MG570454.1_Pimephales_promelas_i .T..T..A...........T.....C..............C..............A..T.....T..TT..........C MG570455.1_Notropis_atherinoides ....C.....C..C..C..T.....C..G..T..T..G....................T.....T..TT.G..T..T..T MG570456.1_Notropis_atherinoides ....C.....C..C..C..T.....C..G..T..T..G....................T.....T..TT....T..T..T MG570457.1_Pimephales_notatus_is .T..T..T........C..T.....C.....T..T.....C........T.....A..T........TT....T..T..C MG570458.1_Pimephales_notatus_is .T..T..T........C..T.....C.....T..T.....C........T.....A..T........TT....T..T..C MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ....C...........C........C........T.....C..............A..T.....T..TT....T..T..C MT364325.1_Hybognathus_amarus_mi ....C...........C........T........T.....C.....T...........T.....T..TT....T..T..C MT501368.1_Gila_cypha_isolate_SN ...................T.....G..G..T..T..G.............G...A..T.....T..T..G..T..T..C MT501369.1_Notropis_simus_pecose .T..T..T........C........T..G.....T.....C.....A...........T.T...T..TT.G.....T... MT501378.1_Hybognathus_amarus_is ....C...........C........T........T.....C.....T...........T.....T..TT....T..T..C MT501385.1_Notropis_jemezanus_vo ....G...........C..T.....T..G..T..T..G....................T.....T..TT.G..T..T..T MT501391.1_Rhinichthys_osculus_i ..........A.................G..T..T..G.............G......T........T..G..T..T..C MT667239.1_Rhinichthys_osculus_t ..........A........T.....G..G..T..T..G.............G......T........T..G..T..T..C MT667242.1_Luxilus_cornutus_vouc ....T.....C........T.....T..G..C..T.....C..G..............T.....T...T....T..T..T MW300340.1_Hybognathus_placitus_ ....C...........C..T.....T.....G..T....................A..T.....T..TT.G..T..T..C MW300341.1_Hybognathus_placitus_ ....C...........C..T.....T.....G..T....................A..T.....T..TT.G..T..T..C NC_013763.1_Mylocheilus_caurinus ...................T.....G.....C...................G...A..C........T..G..T..T..T NC_033926.1_Opsopoeodus_emiliae_ ....T..............T.....T........T........G.....T.....A..T..T.....TT........... NC_037008.1_Notropis_chalybaeus_ ....T..T...........T.....T.....G..T.....C........T.....A..T.....T..TT.G..T..T..T NC_037009.1_Notropis_heterolepis ....C.....C..C.....T.....T..............C..............A..T.....T........T..T..T NC_037010.1_Rhinichthys_obtusus_ ....C..............T.....C.....T...........G.......G...A..T........T.....T.....C NC_037014.1_Notropis_hudsonius_i .T..C..T...........T..T..C.....T..T.....C........G.....A..T.....T...T....T..T..T NC_037015.1_Exoglossum_maxilling .T..C..............T.....C..G..T..T..G.............G...A..C........T.....T.....C NC_054086.1_Ptychocheilus_lucius ............................G..T..T..G..C..G.......GT..A..T.....T..T..G..T..T..C NC_054257.1_Gila_cypha_isolate_S ...................T.....G..G..T..T..G.............G...A..T.....T..T..G..T..T..C NC_054259.1_Gila_nigrescens_isol ...................T.....G..G..T..T..G.....G.......G...A..T.....T..T..G..T..T..C NC_054260.1_Hybognathus_amarus_i ....C...........C........T........T.....C.....T...........T.....T..TT....T..T..C NC_054262.1_Notropis_jemezanus_v ....G...........C..T.....C..G..T..T..G....................T.....T..TT.G..T..T..T Pimephales_notatus_R2S3_________ .T..T..T........C..T.....T.....T..T..G..C........T.....A..T........TT....T..T..T Pimephales_tenellus_tenellu_R2S1 .T..T..A..A..............C........T..............T.....A..C.....T...T.......T..C Pimephales_tenellus_parvice_R2S2 .T..T..A..A..............C........T..............T.....A..T.....T...T.......T..C Pimephales_notatus_R1S1_________ .T..T..T........C..T.....T.....T..T..G..C........T.....A..T........TT....T..T..T MG570452.1_Pimephales_promelas_i .T..T..A...........T.....C..............C..............A..T.....T..TT..........C MG570452.1_Pimephales_promelas_S .T..T..A.....C.....T.....C........T.....C..............A..T.....T..TT..........C AB626850.1_Megalobrama_terminali CTAGCAGGGTCCCTCCCATTATTAGTTGCCCTCCTCCTACTTCAACAATCTACCGGGACTCTATCCATGTTGGTAATCCA AP010779.1_Mylocheilus_caurinus_ T....T......T.G...C.T.....A..T..A........C..G.....C..A......T....TC.A........... AP011215.1_Gila_sp._1460_mitocho T.......C...T.G...C.T........T..A..T.....C...........G......T.......A..A.....T.. AP011263.1_Scardinius_erythropht ..G..C............C.T.....C.....A..T..C..C...........A..A..CT.G......C.A........ AP011267.1_Algansea_lacustris_mi T....C..A..T..T...C.T........T..A.....C.....G.....C..A......T.....C.TC..A.T..T.. AP011268.1_Yuriria_alta_mitochon .....C..A..T..A..GC.T.....G.....A..T..T..C........C..A..A..C......C.AC.AA.T..T.. AP011273.1_Hybognathus_nuchalis_ ..G..C.....A..A..CC.T.....A...T.A.....C.....G.....C..A..A........TT.AC.AA.T..... AP011274.1_Couesius_plumbeus_mit .....C........T...C.T.....C...........G........G.....G......T.G...C.AC.A.....T.. AP011275.1_Platygobio_gracilis_m T....C........G..GC.T.....A.....G.....C..............A............C.AC.AA.T..... AP011277.1_Erimystax_dissimilis_ .....C........G...C.CC....A.....A..T..G..............G......T.....C.A..T..T..... AP011279.1_Pimephales_promelas_m .....C..C.....G..TC.T.....G.....A..G..TT.A.....G..A..A..A........TT.AC.AA.T..... AP011280.1_Clinostomus_elongatus T....C..A.....G..GC.T.....A..T.....T..C..C.....G.....A......T.G..GC.C..A..C..T.. AP012079.1_Luxilus_chrysocephalu ..G..G..A..T.....CC.C.....A..T..G.....C..C........C..A..A...T.....C.AC.AA.T..... AP012080.1_Macrhybopsis_gelida_m T....T..A..TT.A...C.TC....A.....A..T..T..C...........A..A...T.G...T.A..AA.T..T.. AP012083.1_Notropis_atherinoides ..G..C.....T..A..TC.CC....A..G..G.....C..C..G..G..C..A......T.G...C.A..AA.T..T.. AP012084.1_Notropis_baileyi_mito .....C.....G..G..TC.T.....A.....A..A..C..C........C..A..A...T....TC.AC.AA.T..T.. AP012087.1_Cyprinella_galactura_ ..G..C........A..CC.C..G..C..G..A.....T...........C..A...........TC.AC.TA.T..... AP012088.1_Hybopsis_lineapunctat .....C..A..T..A..CC.......A...T.A..T..C...........C..A.....A......C.A..AA.C..... AP012090.1_Luxilus_cornutus_mito ..G..C.....T.....CC.T..G..A.....A.....C..C.....G..C..G......T....TT.AC.AA.T..... AP012091.1_Lythrurus_ardens_mito .....C.....T..A..C..G..G..A.....T..T..C..........A...A..A..C......T.A..AA.T..T.. AP012092.1_Lythrurus_fumeus_mito .....C.....T..A..C...C....A.....A.....C..............A..A..C......T.AC.A..C..T.. AP012093.1_Lythrurus_lirus_mitoc .....C.....T..A..CC....G..A.....T..T..C..........AC..A..A..C..G...T.....A.T..T.. AP012094.1_Lythrurus_umbratilis_ .....C.....T..A..C..G..G..A.....T..T..C..........A...A..A..C......T.A..AA.T..T.. AP012095.1_Macrhybopsis_meeki_mi T....C..A..TT.A...C.T.....A...T.A..T..T..C...........A..A...T.....C..C.AA.T..T.. AP012097.1_Notropis_bifrenatus_m ..G..C..A..T..A..CC.T.....A..T..A..T..C..C..G.....C..A..A...T.....C..C.AA.T..... AP012098.1_Pimephales_sp._MCZunc ..G..C........A..CC.C.....A.....A..T..T..C.....G.....A.....C......C.A..AA.C..... AP012100.1_Notropis_telescopus_m .....C..C..T..A..CC.T.....A...T.A.....C..C..GG.G..C..A..A.....G..TC.A..AA.T..... AP012101.1_Pimephales_notatus_mi .....C........A..CC.C.....A.....A..T..T..C.....G.....A.....C......C.A..AA.C..... AP012102.1_Pimephales_vigilax_mi ..C..C..A...T.A..TC.T.....A.....A.....T........G.....A..A.....G...T.A..AA.T..T.. AP012103.1_Pogonichthys_macrolep T.G..T..A...T.A...C.T..G..A.....A..G.....C........C..A......T....TC.AC.A.....T.. AP012106.1_Richardsonius_balteat T....T..A.....T...C.T..G..G........T..G..C.....G.....G..A...T.G..AC..C....C..T.. AP012108.1_Notropis_chrosomus_mi T....C.....AT.A..CC.T..G..A.....A.....C..C.....G.....A..A.....G...C.AC.AA.T..T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..C..C..A...T.A..TC.T.....A.....A.....T........G.....A..A.....G...T.A..AA.T..T.. Pimephales_vigilax_R1S3_________ ..C..C..A...T.A..TC.T.....A.....A.....T........G.....A..A.....G...T.A..AA.T..T.. DQ536429.1_Notropis_stramineus_m T.G..C..A..TT.A..TC.CC....A...T.G.....T..C........C..A.....C......C..C..A.C..... JX910141.1_Squaliobarbus_curricu ........A.....A..GC..C.C........A........C........C..A..A..CT....T...C.A........ KC351187.1_Squaliobarbus_curricu T.......A.....A..GC..C.C........A........C........C..A..A..CT....T...C.A........ KT278765.1_Pimephales_promelas_m .....C........G..TC.T.....G.....A..G..TT.A.....G..A..A..A........TT.AC.AA.T..... KT289925.1_Pimephales_promelas_m .....C..C.....G..TC.T.....G.....A..G..TT.A.....G..A..A..A...T....TT.AC.AA.T..... KT424924.1_Rhinichthys_osculus_m ..C...........G...C.T..G..A.....A..T.....G..G..G..C..G..A..G..T..TC.A..A..T..... KU200257.1_Chanodichthys_ilishae .................GC..C.............T.................T...............C.A..T..... MF972070.1_Siphateles_bicolor_mo T.......C...T.A...C.C..G.....T..A..T.....C..G.....C..T......T.......AC.A..G..T.. MG570407.1_Notropis_chalybaeus_v .....C.....T..A..CC.T.....A.....A.....T..C...........A..A...T.....T.A..AA.T..T.. MG570408.1_Notropis_bifrenatus_v ..G..C..A..T..A..CC.T.....A..T..A..T..C..C..G.....C..A..A...T.....C..C.AA.T..... MG570413.1_Notropis_heterolepis_ ..G..G.....T..G..CC.CC....A.....A..T..T...........C..A........C...C.AC.AA.T..... MG570416.1_Rhinichthys_obtusus_v T................GC.T.....A.....A..T..G..G.....G..C..G........C..TC....A..T..... MG570417.1_Rhinichthys_obtusus_v T................GC.T.....A.....A..T..G..G.....G..C..G........C..TC....A..T..... MG570420.1_Pimephales_notatus_vo ..G..C........A..CC.C.....A.....A..T..T..C.....G.....A.....C......C.A..AA.C..... MG570443.1_Notropis_hudsonius_is T.G..G.....T..A...C.T.....G...T.A..T..T..C........C..A......T....TC.TC.AA.T..A.. MG570444.1_Rhinichthys_atratulus T.................C.T.....G.....A..T.....C...........A........C..TC.......T..... MG570445.1_Rhinichthys_atratulus T....G............C.T.....G.....A..T.....C...........A........C..TC.......T..A.. MG570447.1_Luxilus_cornutus_isol ..G..C.....T.....CC.T..G..A.....A.....C..C.....G..C..G......T....TC.AC.AA.T..... MG570449.1_Luxilus_cornutus_isol ..G..C.....T.....CC.T..G..A.....A.....C..C.....G..C..G......T....TC.AC.AA.T..... MG570450.1_Pimephales_notatus_is ..G..C........A..CC.C.....A.....A..T..T..C.....G.....A.....C......C.A..AA.C..... MG570451.1_Notropis_bifrenatus_i ..G..C..A..T..A..CC.T.....A..T..A..T..C..C..G.....C..A..A...T.....C..C.AA.T..... MG570453.1_Exoglossum_maxillingu .....C........G...C.CC....A.....A..T..G..............G......T.....C.A..T..T..... MG570454.1_Pimephales_promelas_i .....C..C.....G..TC.T.....G.....A..G..TT.A.....G..AG.A..A...T....TT.AC.AA.T..... MG570455.1_Notropis_atherinoides ..G..C.....T..A..TC.CC....A..G..G.....C..C..G.....C..A......T.....C.A..AA.T..T.. MG570456.1_Notropis_atherinoides ..G..C.....T..A..TC.CC....A..G..G.....C..C..G..G..C..A......T.G...C.A..AA.T..T.. MG570457.1_Pimephales_notatus_is ..G..C........A..CC.C.....A.....A..T..T..C.....G.....A.....C......C.A..AA.C..... MG570458.1_Pimephales_notatus_is ..G..C........A..CC.C.....A.....A..T..T..C.....G.....A.....C......C.A..AA.C..... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v T.G..C..A..T.....TC.T.....A...........C..C........CG.A..A.........C....AA.T..T.. MT364325.1_Hybognathus_amarus_mi ..G..C..A..A..G..CC.T.....A...T.G.....C.....G........A..A........TT.AC.TA.T..T.. MT501368.1_Gila_cypha_isolate_SN ..G.....T...T.G..GC.T........T..A..T.....C..G........G..A...T..........A.....T.. MT501369.1_Notropis_simus_pecose T.G...........A...C.TC....G..T..G.....C..C..G.....C..A............C..C.AA.T..T.. MT501378.1_Hybognathus_amarus_is ..G..C..A..A..G..CC.T.....A...T.G.....C.....G........A..A........TT.AC.TA.T..T.. MT501385.1_Notropis_jemezanus_vo ..G..C.....T..A..CC.CC.G..A.....G.....C.....G..G.....A......T.....C.A..AA.T..T.. MT501391.1_Rhinichthys_osculus_i ..C..C.....T..T...C.T.....A.....A..T..G..G........C..G........C..TC.AC.A..T..... MT667239.1_Rhinichthys_osculus_t ..C..C.....T..T...C.T.....A.....A..T..G..G........C..G........C..TC.AC.A..T..... MT667242.1_Luxilus_cornutus_vouc ..G..C.....T.....CC.T..G..A.....A.....C..C.....G..C..G......T....TC.AC.AA.T..... MW300340.1_Hybognathus_placitus_ T.G..C........A..CC.T.....A...T.A..T..T........G..C..A..A........TC..C.AA.T..T.. MW300341.1_Hybognathus_placitus_ T.G..C........A..CC.T.....A...T.A..T..T........G..C..A..A........TC.AC.AA.T..T.. NC_013763.1_Mylocheilus_caurinus T....T......T.G...C.T.....A..T..A........C..G.....C..A......T....TC.A........... NC_033926.1_Opsopoeodus_emiliae_ .....T.....T..A..CC.T.....A.....A..T..T..C......A.C..A.....C......T.A..AA.T..T.. NC_037008.1_Notropis_chalybaeus_ .....C.....T..A..CC.T.....A.....A.....T..C...........A..A...T.....T.A..AA.T..T.. NC_037009.1_Notropis_heterolepis ..G..G.....T..G..CC.CC....A.....A..T..T...........C..A........C...C.AC.AA.T..... NC_037010.1_Rhinichthys_obtusus_ T................GC.T.....A.....A..T..G..G.....G..C..G........C..TC....A..T..... NC_037014.1_Notropis_hudsonius_i T.G..G.....T..A...C.T.....G...T.A..T..T..C........C..A......T....TC.TC.AA.T..A.. NC_037015.1_Exoglossum_maxilling .....C........G...C.CC....A.....A..T..G..............G......T.....C.A..T..T..... NC_054086.1_Ptychocheilus_lucius T.......C...T.G...C.T...........A..T.....C...........G......T........C.A..G..T.. NC_054257.1_Gila_cypha_isolate_S ..G.....T...T.G..GC.T........T..A..T.....C..G........G..A...T..........A.....T.. NC_054259.1_Gila_nigrescens_isol T.G.....T...T.A..GC.T...........A..T.....C...........G......T.......A..A...G.T.. NC_054260.1_Hybognathus_amarus_i ..G..C..A..A..G..CC.T.....A...T.G.....C.....G........A..A........TT.AC.TA.T..T.. NC_054262.1_Notropis_jemezanus_v ..G..C.....T..A..CC.CC.G..A.....G.....C........G.....A......T.....C.A..AA.T..T.. Pimephales_notatus_R2S3_________ ..G..C.....T..A..CC.C..G..A.....A..T..T..C.....G.....A.....C......T....AA.T..... Pimephales_tenellus_tenellu_R2S1 .....C........A..TC.T.....A.....A..A..T..C.....G.....A..A.........T.AC..A.T..T.. Pimephales_tenellus_parvice_R2S2 .....C........A..TC.T.....A.....A..A..T..C.....G.....A..A.........T.AC..A.T..T.. Pimephales_notatus_R1S1_________ ..G..C.....T..A..CC.C..G..A.....A..T..T..C.....G.....A.....C......T....AA.T..... MG570452.1_Pimephales_promelas_i .....C..C.....G..TC.T.....G.....A..G..TT.A.....G..A..A..A...T....TT.AC.AA.C..... MG570452.1_Pimephales_promelas_S .....C..C.....G..TC.T.....G.....A..G..TT.A.....G..A..A..A........TT.AC.AA.T..... AB626850.1_Megalobrama_terminali ATACTCTCAACCGATACTCCTAAACTCCTGAGGTCACAAAATCTGATGAGCCGGCTGCTTAATCGCATTCCTAGTAAAAA AP010779.1_Mylocheilus_caurinus_ ...TG.C.....AT..T.A...G..........C.................G..............C..TT....G.... AP011215.1_Gila_sp._1460_mitocho ....G....G..AG.GT.G..T...........C..T..............A.....T.....T..C..T.......... AP011263.1_Scardinius_erythropht G...A.C..G..A...T.A...G.......G..C.................A..............C...T......... AP011267.1_Algansea_lacustris_mi ...TA.C.CCA.TC.GT.GG.G.G.........C..T...........G..A..T..T.....T..C..TT......... AP011268.1_Yuriria_alta_mitochon ....A.C.CC..TC.C..AG...........A....T..............A..............C...T......... AP011273.1_Hybognathus_nuchalis_ ....A.C.CT..A.....A............A.C..T...........G..A..............C...T......... AP011274.1_Couesius_plumbeus_mit G..TA.C.CG..AC..T.G..GG....T.....C.....G........G..G..............C..T.......... AP011275.1_Platygobio_gracilis_m G..TA.C.CC...C..T.AA.G.G.......A....T..G........G.....T...........C..TT......... AP011277.1_Erimystax_dissimilis_ ...TG.C.....AC..T.GT..G.T........C.....G...........A..T...........C..TT......... AP011279.1_Pimephales_promelas_m ....A.C.C...T.....GA...G.A.A...A.C..............G..A..T..T........G..TT....C.... AP011280.1_Clinostomus_elongatus G..TG.C..G..A...T.A..............C...........G.....G..T.....G.....C..TT......... AP012079.1_Luxilus_chrysocephalu G...A...CT..TC.G..GA...G.......A....T...........G..A.CT........T..C...T......... AP012080.1_Macrhybopsis_gelida_m ....A.A.CC..AC..T.AAC.G........A....T...........G.....T..T.....T..C..T.......... AP012083.1_Notropis_atherinoides ....A.C.CT..T.CC..AT...G...A...A....T...........G..A..T...........C...T....G.... AP012084.1_Notropis_baileyi_mito ....A.C.CC..AG....AA...G.......A....T...........G..A..T........T..C...T......... AP012087.1_Cyprinella_galactura_ ...TA.A.C..TAGAGT.GG.G.GT..A...A.C..T........G.....A.C......G.....C...T......... AP012088.1_Hybopsis_lineapunctat ....A...CT.TA.C...AA...G.......A....T...........G..A..............C............. AP012090.1_Luxilus_cornutus_mito ....A.C.CT..TC.G..AG...G.......A....T........G..G..A..T...........C...T.G....... AP012091.1_Lythrurus_ardens_mito ...TA.A.CC..T.C...AG....T......A....T..............A..............C.....G.....G. AP012092.1_Lythrurus_fumeus_mito ....G.A.CCTTT..GT.AGA...T..T...A....T..............G........G.....C...T......... AP012093.1_Lythrurus_lirus_mitoc ...TG.A.CC..C.C...AG..GGT.....GA....T..G...........A...........T..C...........G. AP012094.1_Lythrurus_umbratilis_ ...TA.A.CC..T.C...AG....T......A....T..G...........A..............C...........G. AP012095.1_Macrhybopsis_meeki_mi ....A.A.CC..AC..T.AAC..........A....T...........G.....T..T........C............. AP012097.1_Notropis_bifrenatus_m G..TA...CT..CG..T.AA...C...T...A.C..T..............A.C.........T..C.....C....... AP012098.1_Pimephales_sp._MCZunc G...A.C.CT..AG....AT....TA.....A...................A..................T......... AP012100.1_Notropis_telescopus_m ....A.C.CT..T.....AG.T.........A....T...........G..A..T......C.T......T......... AP012101.1_Pimephales_notatus_mi ....A.C.CT..AG....A.....TA.....A...................A..................T......... AP012102.1_Pimephales_vigilax_mi ...TG.A.CT..A.....AA..G..A....G..C..T...G..........A........G..T.....TT....T.... AP012103.1_Pogonichthys_macrolep ...TG.C..G..AC..T.A...G..........C.....G.....G..G..G......C.......C...T......... AP012106.1_Richardsonius_balteat ...TG.C........GT.A..GG..........C.....G...........A..T...........C..TT......... AP012108.1_Notropis_chrosomus_mi ....A.C.CCT.AG....AG...........A.C..T...........G..A..............C...T....G.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...TG.A.CT..A.....AA..G..A....G..C..T...G..........A........G..T.....TT....T.... Pimephales_vigilax_R1S3_________ ...TG.A.CT..A.....AA..G..A....G..C..T...G..........A........G..T.....TT....T.... DQ536429.1_Notropis_stramineus_m G...A.C.CCTTAC.T..AG.G.G...A...A.C...........G.....A..T...........C........G.... JX910141.1_Squaliobarbus_curricu ...T........AC.T......G..........C..T...........G.....................T....G.... KC351187.1_Squaliobarbus_curricu ...T........AC.T......GG.........C..T...........G.....................T....G.... KT278765.1_Pimephales_promelas_m ....A.C.C...T.....GA...G.A.T...A.C..T...........G..A..T..............TT....C..G. KT289925.1_Pimephales_promelas_m ....A.C.C...T.....GA...G.A.T...A.C..T...........G..A..T..T........G..TT....C..G. KT424924.1_Rhinichthys_osculus_m ...TG.C..C..AT..T.A..G...........C..T..............G..A...........C..TT......... KU200257.1_Chanodichthys_ilishae ......C..G..AT....T...G..........C.............................T......T....G.... MF972070.1_Siphateles_bicolor_mo ...TA....G..AT.G..A..T..............T..............AA.T..T.....T..T..T.......... MG570407.1_Notropis_chalybaeus_v ....A.C.CT..A..TT.AA...G.......A.C..T..............A..T...........C...T......... MG570408.1_Notropis_bifrenatus_v G..TA...CT..CG..T.AA...C...T...A.C..T..............A.C.........T..C.....C....... MG570413.1_Notropis_heterolepis_ ....A.C.CT..CC.G..AA...G.......A....T.....T.....G..A..T...........C...T......... MG570416.1_Rhinichthys_obtusus_v ...TG.C.....AC.G..A..GG.......G........G..T.....G..G........G.....C..T.......... MG570417.1_Rhinichthys_obtusus_v ...TG.C.....AC.G..A..GG.......G........G..T.....G..G........G.....C..T.......... MG570420.1_Pimephales_notatus_vo G...A.C.CT..AG....AT....TA.....A...................A..................T......... MG570443.1_Notropis_hudsonius_is ...TG.C.CT..CC....GA...G.......A....T........G.....A........G.....C..TT......... MG570444.1_Rhinichthys_atratulus G..TG.C.....AC.G..A..CG........A.C.....G..T.................G.....C..T.......... MG570445.1_Rhinichthys_atratulus G..TG.C.....AC.G..A..CG........A.C.....G..T.................G.....C..T.......... MG570447.1_Luxilus_cornutus_isol ....G.C.CT..TC.G..AG...G.......A....T........G..G..A..T...........C...T.G..G.... MG570449.1_Luxilus_cornutus_isol ....G.C.CT..TC.G..AG...G.......A....T........G..G..A..T...........C...T.G..G.... MG570450.1_Pimephales_notatus_is G...A.C.CT..AG....AT....TA.....A...................A..................T......... MG570451.1_Notropis_bifrenatus_i G..TA...CT..CG..T.AA...C...T...A.C..T..............A.C.........T..C.....C....... MG570453.1_Exoglossum_maxillingu ...TG.C.....AC..T.GT..G.T........C.....G...........A..T...........C..TT......... MG570454.1_Pimephales_promelas_i ....A.C.C...T.....GA...G.A.T...A.C..T...........G..A..T..T........G..TT....C..G. MG570455.1_Notropis_atherinoides ....A.C.CT..T.CC..AT...G...A...A....T...........G..A..T...........C...T....G.... MG570456.1_Notropis_atherinoides ....A.C.CT..T.CC..AT...G...A...A....T...........G..A..T...........C...T....G.... MG570457.1_Pimephales_notatus_is G...A.C.CT..AG....AT....TA.....A...................A..................T......... MG570458.1_Pimephales_notatus_is G...A.C.CT..AG....AT....TA.....A...................A..................T......... MK421554.1_Parabramis_pekinensis ..............................G...................................G............. MT333789.1_Notropis_lutipinnis_v ...TA.C.CT...G....AA...G.......A.C..T........G..G..............T..C.....G....... MT364325.1_Hybognathus_amarus_mi ...TA...CT........A............A.C..T........G..G..A..T.....G..T..C...T.G....... MT501368.1_Gila_cypha_isolate_SN ...TG....G..A..GT.G..T...........C..T..............A.....T.....T..C..T.......... MT501369.1_Notropis_simus_pecose ....A.C.CT..A.....AAC..G.........C..T...........G..T..T.....G.....C.....G....... MT501378.1_Hybognathus_amarus_is ...TA...CT........A............A.C..T........G..G..A..T.....G..T..C...T.G....... MT501385.1_Notropis_jemezanus_vo G...A.C.CT..T.CC..AT.......A...A....T..G........G..A..T...........C...T....G..G. MT501391.1_Rhinichthys_osculus_i ...TA.C.....AT..T.A..G..............T........G.....G..T...........C..TT......... MT667239.1_Rhinichthys_osculus_t ...TA.C.....AT..T.A..G...........C..T........G.....G..T...........C..TT......... MT667242.1_Luxilus_cornutus_vouc ....G.C.CT..TC.G..AG...G.......A....T........G..G..A..T...........C...T.G..G.... MW300340.1_Hybognathus_placitus_ G...A.C.CT.....G..AG...G.......A.C..T...........G..G..T.....G.....C...T......... MW300341.1_Hybognathus_placitus_ G...A.C.CT.....G..AG...G.......A.C..T...........G..G..T.....G.....C...T......... NC_013763.1_Mylocheilus_caurinus ...TG.C.....AT..T.A...G..........C.................G..............C..TT....G.... NC_033926.1_Opsopoeodus_emiliae_ ....A.C.CTTTA.....AG....TA.......C..T..............A.........C.......TT......... NC_037008.1_Notropis_chalybaeus_ ....A.C.CT..A..TT.AA...G.......A.C..T..............A..T...........C...T......... NC_037009.1_Notropis_heterolepis ....A.C.CT..CC.G..AA...G.......A....T.....T.....G..A..T...........C...T......... NC_037010.1_Rhinichthys_obtusus_ ...TG.C.....AC.G..A..GG.......G........G..T.....G..G........G.....C..T.......... NC_037014.1_Notropis_hudsonius_i ...TG.C.CT..CC....GA...G.......A....T........G.....A........G.....C..TT......... NC_037015.1_Exoglossum_maxilling ...TG.C.....AC..T.GT..G.T........C.....G...........A..T...........C..TT......... NC_054086.1_Ptychocheilus_lucius ....A.......A...T.G..T........G..C..T..G...........A.....T.....T..C..T.......... NC_054257.1_Gila_cypha_isolate_S ...TG....G..A..GT.G..T...........C..T..............A.....T.....T..C..T.......... NC_054259.1_Gila_nigrescens_isol ....G....G..A..GT.G..TG..........C..T..............A.....T.....T..C..T.......... NC_054260.1_Hybognathus_amarus_i ...TA...CT........A............A.C..T........G..G..A..T.....G..T..C...T.G....... NC_054262.1_Notropis_jemezanus_v G...A.C.CT..T.CC..AT...G...A...A....T..G........G..A..T...........C...T....G..G. Pimephales_notatus_R2S3_________ G...A.C.C...A.....AA....TA.....A....T........G.....A...........T.....TT......... Pimephales_tenellus_tenellu_R2S1 ....A.C.CT..T.....AA.G...A.T...A.C..T..............A.................TT......... Pimephales_tenellus_parvice_R2S2 ....A.C.CT..T.....AA.G...A.T...A.C..T..............A.................TT......... Pimephales_notatus_R1S1_________ G...A.C.C...A.....AA....TA.....A....T........G.....A...........T.....TT......... MG570452.1_Pimephales_promelas_i ....A.C.C...T.....GA...G.A.T...A.C..T...........G..A..T..T........G..TT....C..G. MG570452.1_Pimephales_promelas_S ....A.C.C...T.....GA...G.A.A...A.C..............G..A..T..T........G..TT....C.... AB626850.1_Megalobrama_terminali TACCATTATACGGAGTACACCTGTGACTACCAAAAGCACATGTTGAAGCCCCAGTCGCAGGATCTATAGTACTAGCAGCG AP010779.1_Mylocheilus_caurinus_ .....C.G...........TT....G...........G..C..G........T..............G..G......... AP011215.1_Gila_sp._1460_mitocho .....C.G..T...........A...T.G..............A........TA.T..G....................T AP011263.1_Scardinius_erythropht ..........T..C..C.....A..G.....C.....G..C..A........C..T.....G..............G... AP011267.1_Algansea_lacustris_mi .G..TC.T..T........T..T.................C..A........C..T.....G..C.....G........A AP011268.1_Yuriria_alta_mitochon ....TC.T..T..T........T........G........C..A........C..T........C..G...........A AP011273.1_Hybognathus_nuchalis_ ....TC.T.....G..C...........G..G..G........A........T..T........C.....C........A AP011274.1_Couesius_plumbeus_mit .G..CC....T..T.....T..C..GT.............C..A........T..T...........G........G..A AP011275.1_Platygobio_gracilis_m ....TC.C..T..G........A.....G..G.....G..C..A........T..T........C........G..G..A AP011277.1_Erimystax_dissimilis_ ....C.....T...........A.....G.....G.....C..A..G.....C..T...........G...........A AP011279.1_Pimephales_promelas_m ....TC.T..T..T.....T..C..GT................A........C..T........C.....T.....C..A AP011280.1_Clinostomus_elongatus ....GC.G..T..G........A...T....G........C..A........C..T..............C........A AP012079.1_Luxilus_chrysocephalu ....CC.T.....T..G..T..A.................C..A..G.....C..T........C..G..C........A AP012080.1_Macrhybopsis_gelida_m ....CC.T..T.....G..T..A........G...........A.....T..C..T.......................A AP012083.1_Notropis_atherinoides .G..TC.T..T........T..A..G.....G........C..A..G.....C..T..C..G........G.....G..A AP012084.1_Notropis_baileyi_mito ....TC.C..T..T.....T..A.....T...........C..A........C..T..G........G..C........A AP012087.1_Cyprinella_galactura_ ....CC.T.....T..C..T..A.....G..T...........A........C..T........C.....T.....G..A AP012088.1_Hybopsis_lineapunctat ....TC.T..T..T..T..T..A...........G.....C..A........C..T.....G..C.....T........A AP012090.1_Luxilus_cornutus_mito ....TC.T..T..T.....T..A...T.............C..A..G.....C..T..G..G.....G..C........A AP012091.1_Lythrurus_ardens_mito ....TC.T..T..T..............G...........C..A.....T..C..A........A.....T........A AP012092.1_Lythrurus_fumeus_mito ....TC.T.....C........A...T....G..G.....C..A........C..T..............T........A AP012093.1_Lythrurus_lirus_mitoc ....TC.T..T..T.....T..A.....G...........C..A.....T..C..A........A..G..T..G.....A AP012094.1_Lythrurus_umbratilis_ ....TC.T..T..T..............G...........C..A.....T..C..A........A.....T........A AP012095.1_Macrhybopsis_meeki_mi .G..CC.T..T........T..A....................A.....T.....T..G.................G..A AP012097.1_Notropis_bifrenatus_m ....TC.T..T..T........T........G..G.....C..A........C..T.....T..C.....T..G.....A AP012098.1_Pimephales_sp._MCZunc ....TC.T.....C.....T..C..GT....T........C...........C..T.....G..A.....C.....T..A AP012100.1_Notropis_telescopus_m .G..TC.T..T..T..T..TT.A..G.....G........C..A........C..T.....G........T..G.....A AP012101.1_Pimephales_notatus_mi ....TC.T.....C.....T..C..GT....T........C...........C..T.....G..A.....C.....T..A AP012102.1_Pimephales_vigilax_mi ....TC.T..T..C.....T..T...T....T...........A..G.....T..T....................T..A AP012103.1_Pogonichthys_macrolep .....C.G............T....G........G.....C..A..G.....T..T.....G.....G...........A AP012106.1_Richardsonius_balteat .G...C.G..T..G........A..GT.G...........C..A........C..T...........G.....G..G..A AP012108.1_Notropis_chrosomus_mi ....CC.T..T..T.....T..A.....C..............G.....T..T..T..............C........A AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....TC.T..T..C.....T..T...T....T...........A..G.....T..T....................T..A Pimephales_vigilax_R1S3_________ ....TC.T..T..C.....T..T...T....T...........A..G.....T..T....................T..A DQ536429.1_Notropis_stramineus_m ....TC.T..T..T..C..T..A.....G..T..G..C..C..A..G.....T........T..C.....T..G.....A JX910141.1_Squaliobarbus_curricu ....GC....T.........T.A...T..................................G..C..............A KC351187.1_Squaliobarbus_curricu ....GC....T.........T.A...T..................................G..C..............A KT278765.1_Pimephales_promelas_m ....TC.T..T..T.....T..A..GT................A..G.....C..T........C.....T..G..C..A KT289925.1_Pimephales_promelas_m ....TC.T..T..T.....T..C...T.............C..A........C..T........C.....T.....C..A KT424924.1_Rhinichthys_osculus_m .G..CC.G.................G...........G.....A........C..T.....G.....G...........A KU200257.1_Chanodichthys_ilishae ......................C..............C..C..C....................C..G...........A MF972070.1_Siphateles_bicolor_mo ....GC.G..T........TT.A.................C..A........CA.T.....G..............G..T MG570407.1_Notropis_chalybaeus_v ....CC.C..T..T.....T..A.....C..............A........C..T.....G.....G..T........A MG570408.1_Notropis_bifrenatus_v ....TC.T..T..T........T........G..G.....C..A........C..T.....T..C.....T..G.....A MG570413.1_Notropis_heterolepis_ ....TC.T..T..T.....T..A..............G.....A........G..T.................G..G..A MG570416.1_Rhinichthys_obtusus_v .....C.G..T..G...........G..............C..A........C..T..C...........G.....G..A MG570417.1_Rhinichthys_obtusus_v .....C.G..T..G...........G..............C..A........C..T..C...........G.....G..A MG570420.1_Pimephales_notatus_vo ....TC.T.....C.....T..C..GT....T........C...........C..T.....G..A.....C.....T..A MG570443.1_Notropis_hudsonius_is .G..TC.T.....T.....T..A...T..........G..C..A..G.....C..T........C.....T..G.....A MG570444.1_Rhinichthys_atratulus ....GC.G...........T..A..G..............C..A........C..T..C.................G..A MG570445.1_Rhinichthys_atratulus ....GC.G...........T..A..G..............C..A........C..T..C.................G..A MG570447.1_Luxilus_cornutus_isol ....TC.T..T..T.....T..A...T.............C..A..G.....C..T..G..G.....G..C........A MG570449.1_Luxilus_cornutus_isol ....TC.T..T..T.....T..A...T.............C..A..G.....C..T..G..G.....G..C........A MG570450.1_Pimephales_notatus_is ....TC.T.....C.....T..C..GT....T........C...........C..T.....G..A.....C.....T..A MG570451.1_Notropis_bifrenatus_i ....TC.T..T..T........T........G..G.....C..A........C..T.....T..C.....T..G.....A MG570453.1_Exoglossum_maxillingu ....C.....T...........A.....G.....G.....C..A..G.....C..T...........G...........A MG570454.1_Pimephales_promelas_i ....TC.T..T..T.....T..C...T.............C..A........C..T........C.....T.....C..A MG570455.1_Notropis_atherinoides .G..TC.C..T..C.....T..A..G.....G........C..A..G.....C..T..C..G........G.....G..A MG570456.1_Notropis_atherinoides .G..TC.T..T..C.....T..A..G.....G........C..A..G.....C..T..C..G........G.....G..A MG570457.1_Pimephales_notatus_is ....TC.T.....C.....T..C..GT....T........C...........C..T.....G..A.....C.....T..A MG570458.1_Pimephales_notatus_is ....TC.T.....C.....T..C..GT....T........C...........C..T.....G..A.....C.....T..A MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .G..CC.T..T..T........A.....G..............A........C..T..............C........A MT364325.1_Hybognathus_amarus_mi ....TC.T..T.....C..T..A.....G..G..G.....C..A........T..T........C.....C........A MT501368.1_Gila_cypha_isolate_SN .....C.G..T..G............T................A........TA.T..G....................T MT501369.1_Notropis_simus_pecose .G..CC.C..T..C..G.........T.............C..G........C..T..G..G.....G..C........A MT501378.1_Hybognathus_amarus_is ....TC.T..T..T..C..T..A.....G..G..G.....C..A........T..T........C.....C........A MT501385.1_Notropis_jemezanus_vo .G..CC.C..T..C.....T..A..G.....G........C..A........C..T..C..G.....G........G..A MT501391.1_Rhinichthys_osculus_i ....C..G........G........GT.......G..G..C..A........C..T..G..G.................A MT667239.1_Rhinichthys_osculus_t ....CC.G........G........GT.......G..G..C..A........C..T..G....................A MT667242.1_Luxilus_cornutus_vouc ....TC.T..T..T.....T..A...T.............C..A..G.....C..T..G..G.....G..C........A MW300340.1_Hybognathus_placitus_ .G..TC.C..T.....T.....A.....G..G.....G..C..A........T........G..A.....T.....G... MW300341.1_Hybognathus_placitus_ .G..TC.C..T.....T.....A.....G..G.....G..C..A........T........G..A.....C.....G... NC_013763.1_Mylocheilus_caurinus .....C.G...........TT....G...........G..C..G........T..............G..G......... NC_033926.1_Opsopoeodus_emiliae_ ....C..G..T..C........A.....T..C........C..A..G......A.T.....G........C..C..T..A NC_037008.1_Notropis_chalybaeus_ ....CC.C..T..T.....T..A.....C..............A........C..T.....G.....G..T........A NC_037009.1_Notropis_heterolepis ....TC.T..T..T.....T..A..............G.....A........G..T.................G..G..A NC_037010.1_Rhinichthys_obtusus_ .....C.G..T..G...........G..............C..A........C..T..C...........G.....G..A NC_037014.1_Notropis_hudsonius_i .G..TC.T.....T.....T..A...T..........G..C..A..G.....C..T........C.....T..G.....A NC_037015.1_Exoglossum_maxilling ....C.....T...........A.....G.....G.....C..A..G.....C..T...........G...........A NC_054086.1_Ptychocheilus_lucius ....GC.G..T...............T................A........TA.T..G....................C NC_054257.1_Gila_cypha_isolate_S .....C.G..T..G............T................A........TA.T..G....................T NC_054259.1_Gila_nigrescens_isol .....C.G..T...........C...T................A........TA.T..G....................T NC_054260.1_Hybognathus_amarus_i ....TC.T..T.....C..T..A.....G..G..G.....C..A........T..T........C.....C........A NC_054262.1_Notropis_jemezanus_v .G..CC.C..T..C.....T..A..G.....G........C..A........C..T..C..G.....G........G..A Pimephales_notatus_R2S3_________ ....TC.T.....C.....T..C........T........C...........C..T........A.....T.....T..A Pimephales_tenellus_tenellu_R2S1 ....TC.T..T..C.....T..C...T.............C..A........C..T..G..C..C.....T.....T..A Pimephales_tenellus_parvice_R2S2 ....TC.T..T..C.....T..C.................C..A........C..T..G..C..C.....T.....T..A Pimephales_notatus_R1S1_________ ....TC.T.....C.....T..C........T........C...........C..T........A.....T.....T..A MG570452.1_Pimephales_promelas_i ....TC.T..T..T.....T..C...T.............C..A........C..T........C.....T.....C..A MG570452.1_Pimephales_promelas_S ....TC.T..T..T.....T..C..GT................A........C..T........C.....T.....C..A AB626850.1_Megalobrama_terminali GTACTACTAAAACTAGGGGGATACGGAATAATACGAATAATAATTATGCTAGACCCACTATCTAAAGAACTAGTATACCC AP010779.1_Mylocheilus_caurinus_ ..T...........T..A..G.......................C..A..G.....G..C............A.T..... AP011215.1_Gila_sp._1460_mitocho ..T..G..T.....T.....C..T..G.....G..G....................C..C.........T.GA.T..T.. AP011263.1_Scardinius_erythropht ..C...T.......T.....T.....G..G.....G......G.............C..C......C.G.....C..... AP011267.1_Algansea_lacustris_mi A.T...T.G..G..T.....C..T..C..G...........G..A..A.....A..G..C.....G..G...A.C..... AP011268.1_Yuriria_alta_mitochon A.T........G..C........T..T.................A..A........G..C............A.C..T.. AP011273.1_Hybognathus_nuchalis_ A.T........G..T...........T.....G...........A..A...........T........C..G..C..... AP011274.1_Couesius_plumbeus_mit ..C..............A........C.....G..G...........A.....T..C..C............A.C..T.. AP011275.1_Platygobio_gracilis_m A.T...........T...........C........G........A...........G..C.....G..G...A.C..... AP011277.1_Erimystax_dissimilis_ A.T...........T..C..............G.........G.A..AT..........C............A.T..... AP011279.1_Pimephales_promelas_m A.T..G........T.....T........G.....C........A..AT..........C.....GA.C...A.T..... AP011280.1_Clinostomus_elongatus ..C.....G..G..T....................G...........A........G..C............A.T..T.. AP012079.1_Luxilus_chrysocephalu A.C...T.G.....T...........C.....G..T........AG..T.......C..C........G..GA.C..... AP012080.1_Macrhybopsis_gelida_m A.T...........T..A..C.....C.................A..T...........C............A.C..T.. AP012083.1_Notropis_atherinoides A.T..C..G.....T..A........T...........G.....A........T..C..C........G..TA.C..... AP012084.1_Notropis_baileyi_mito A.T.....T..G..T.....G.....T........T........G..AT.G.....G..C........C...A.T..... AP012087.1_Cyprinella_galactura_ A.T........G..T..A........C..G..G..G..G.....A..A........G..C......C.C...A.C..T.. AP012088.1_Hybopsis_lineapunctat A.T..............A.....T..C..G.....C........A..A...........C......A.C...A.C..... AP012090.1_Luxilus_cornutus_mito A.T..G..G.....T..A.....T..C..G.....T..G.....GG.A...........C...........GA.C..... AP012091.1_Lythrurus_ardens_mito A.TT....G..G..G..A.....T..T.....G..T..G.................T..C............A.C..... AP012092.1_Lythrurus_fumeus_mito A.TT.G..G..G..G..A.....T..C..G.....T............T.......C..C......C.C...A.C..... AP012093.1_Lythrurus_lirus_mitoc A.TT..........C..A........T.....G..T..G.................T..C............A.C..... AP012094.1_Lythrurus_umbratilis_ A.TT....G..G..G..A.....T..T.....G..T..G.................T..C............A.C..... AP012095.1_Macrhybopsis_meeki_mi A.T..G........T..A..C.....C...........G..G..G..CT..........C............A.C..... AP012097.1_Notropis_bifrenatus_m A.T...........C..A........C..G.....T..G.....A..............C.....GC.G..TA.C..... AP012098.1_Pimephales_sp._MCZunc A.T...........T..C.....T..T........T........GT.A........G..C........C..GA.C..... AP012100.1_Notropis_telescopus_m A.T........G..T.....G.....T........T.....G.....A...........C........C...A.T..... AP012101.1_Pimephales_notatus_mi A.T...........T..C.....T..T........T........GT.A........G..C........T..GA.C..... AP012102.1_Pimephales_vigilax_mi A.T...........T..C.....T..T.....G..T......GCA..A...........C......A.T...A.T..... AP012103.1_Pogonichthys_macrolep ..T..G........T..A..G........G..G..............A...........T..C.....G...A.T..T.. AP012106.1_Richardsonius_balteat ..T..C.....G..T..A.....T..T....................A........G..C.....G......A.T..T.. AP012108.1_Notropis_chrosomus_mi A.T..C..G.....C..A........T..G..G..T..G.....A...........C..C.....G..CT..A.C..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ A.T...........T..C.....T..T.....G..T......GCA..A...........C......A.T...A.T..... Pimephales_vigilax_R1S3_________ A.T...........T..C.....T..T.....G..T......GCA..A...........C......A.T...A.T..... DQ536429.1_Notropis_stramineus_m A.T...........T..A.....T..C.....G..T........A..A........G..C.....G..C.....T..... JX910141.1_Squaliobarbus_curricu ............T....A........G.......................G...........C...C.G........T.. KC351187.1_Squaliobarbus_curricu ............T....A........G.......................G...........C...C.G........T.. KT278765.1_Pimephales_promelas_m A.T...........T...........G..G..G..C........G..AT..........C.....GA.C...A.T..... KT289925.1_Pimephales_promelas_m A.T..G........T.....T........G.....C.....G..A..AT..........C.....GA.C...A.T..... KT424924.1_Rhinichthys_osculus_m A.T..G........G.....G.....G.....G..G...........AT.G........C............A.T..T.. KU200257.1_Chanodichthys_ilishae ..T...T..............C........................................C................. MF972070.1_Siphateles_bicolor_mo ..G.....T.....T..A..T..T........G...G...................C..C.........T..A.T..T.. MG570407.1_Notropis_chalybaeus_v A.T.....G.....T..A........T........T........A..A...........C........C....CC..... MG570408.1_Notropis_bifrenatus_v A.T...........C..A........C..G.....T..G.....A..............C.....GC.G..TA.C..... MG570413.1_Notropis_heterolepis_ A.T........G..G.....G..T..C........T........G..A........C..C............A.C..... MG570416.1_Rhinichthys_obtusus_v A.T...T.............G..T..C..G.....G.....G......T..........C............A.T..T.. MG570417.1_Rhinichthys_obtusus_v A.T...T.............G..T..C..G.....G.....G......T..........C............A.T..T.. MG570420.1_Pimephales_notatus_vo A.T...........T..C.....T..T........T........GT.A........G..C........C..GA.C..... MG570443.1_Notropis_hudsonius_is A.T.....G.....T........T..T..G.....G........A..A..G..G..G..C............A.T..T.. MG570444.1_Rhinichthys_atratulus A.T...T.............G.....T..............GG................C............A.T..... MG570445.1_Rhinichthys_atratulus A.T...T.............G.....T..............GG................C............A.T..... MG570447.1_Luxilus_cornutus_isol A.T..G..G.....T..A.....T..C..G.....T..G.....GG.A...........C...........GA.C..... MG570449.1_Luxilus_cornutus_isol A.T..G..G.....T..A.....T..C..G.....T..G.....GG.A...........C...........GA.C..... MG570450.1_Pimephales_notatus_is A.T...........T..C.....T..T........T........GT.A........G..C........C..GA.C..... MG570451.1_Notropis_bifrenatus_i A.T...........C..A........C..G.....T..G.....A..............C.....GC.G..TA.C..... MG570453.1_Exoglossum_maxillingu A.T...........T..C..............G..G......G.A..AT..........C............A.T..... MG570454.1_Pimephales_promelas_i A.T..G........T.....T........G.....C.....G..A..AT..........C.....GA.C...A.T..... MG570455.1_Notropis_atherinoides A.T..C........T..A........T...........G.....A........T..C..C........G..TA.C..... MG570456.1_Notropis_atherinoides A.T..C..G.....T..A........T...........G...C.A........T..C..C........G..TA.C..... MG570457.1_Pimephales_notatus_is A.T...........T..C.....T..T........T........GT.A........G..C........C..GA.C..... MG570458.1_Pimephales_notatus_is A.T...........T..C.....T..T........T........GT.A........G..C........C..GA.C..... MK421554.1_Parabramis_pekinensis .................A.............................................................. MT333789.1_Notropis_lutipinnis_v A.T...T.......T.....G.....T........T......G................C........CT..A.C..... MT364325.1_Hybognathus_amarus_mi A.T...........G........T..T.....G..T........A..A...........T........C..GA.T..... MT501368.1_Gila_cypha_isolate_SN ..T..G..T..G..T..A..C..T................................C..C............A.T..T.. MT501369.1_Notropis_simus_pecose A.T...T.G..G..T.....G..T..T........C........G..............C.....G..C..CA.C..T.. MT501378.1_Hybognathus_amarus_is A.T...........G........T..T.....G..T........A..A...........T........C..GA.T..... MT501385.1_Notropis_jemezanus_vo A.T..C........T.....G.....T........G..G..G..G........T..C..C........G..TA.C..T.. MT501391.1_Rhinichthys_osculus_i A.T..G.....G..G..C..G..T.....G..G........G......T....A..C..C.....G......A.C..T.. MT667239.1_Rhinichthys_osculus_t A.T..G.....G..G..C.....T.....G..G........G......T....A..C..C.....G......A.C..T.. MT667242.1_Luxilus_cornutus_vouc A.T..G..G.....T..A.....T..C..G.....T..G.....GG.A...........C...........GA.C..... MW300340.1_Hybognathus_placitus_ A.T.....G..G.....A..G.....T.....G..C..G..G..A..A..C........C......A.C..TA.C..T.. MW300341.1_Hybognathus_placitus_ A.T.....G..G.....A..G.....T.....G..C..G..G..A..A..C........C......A.C..TA.C..T.. NC_013763.1_Mylocheilus_caurinus ..T...........T..A..G.......................C..A..G.....G..C............A.T..... NC_033926.1_Opsopoeodus_emiliae_ A.T..G........T..A.....T..C........T........AC..T.......C..T......A.TT...CT..T.. NC_037008.1_Notropis_chalybaeus_ A.T.....G.....T..A........T........T........A..A...........C........C....CC..... NC_037009.1_Notropis_heterolepis A.T........G..G.....G..T..C........T........G..A........C..C............A.C..... NC_037010.1_Rhinichthys_obtusus_ A.T...T.............G..T..C..G.....G.....G......T..........C............A.T..T.. NC_037014.1_Notropis_hudsonius_i A.T.....G.....T........T..T..G.....G........A..A..G..G..G..C............A.T..T.. NC_037015.1_Exoglossum_maxilling A.T...........T..C..............G..G......G.A..AT..........C............A.T..... NC_054086.1_Ptychocheilus_lucius ..T..G..T.....T.....C...................................C..C.........T..A.T..T.. NC_054257.1_Gila_cypha_isolate_S ..T..G..T..G..T..A..C..T................................C..C............A.T..T.. NC_054259.1_Gila_nigrescens_isol ..T..G..T.....T.....T..T................................C..C.........T..A.T..... NC_054260.1_Hybognathus_amarus_i A.T...........G........T..T.....G..T........A..A...........T........C..GA.T..... NC_054262.1_Notropis_jemezanus_v A.T..C........T.....G.....T........G..G..G..G........T..C..C........G..CA.C..T.. Pimephales_notatus_R2S3_________ A.T..G........T..C.....T..T..G..G..T..G...G.A..A...........C........C...A.C..... Pimephales_tenellus_tenellu_R2S1 A.T...........T..C..G.....C..G.....T........A..A..G........C......A.C...A.C..... Pimephales_tenellus_parvice_R2S2 A.T...........T..C..G.....C..G.....T........A..A..G........C......A.C...A.C..... Pimephales_notatus_R1S1_________ A.T..G........T..C.....T..T..G..G..T..G...G.A..A...........C........C...A.C..... MG570452.1_Pimephales_promelas_i A.T..G........T.....T........G.....C.....G..A..AT..........C.....GA.C...A.T..... MG570452.1_Pimephales_promelas_S A.T..G........T.....T........G.....C........A..AT..........C.....GA.C...A.T..... AB626850.1_Megalobrama_terminali ATTTATCATTCTAGCATTATGGGGCATTATCATGACTGGATCAATCTGCCTCCGACAAACAGACCTCAAGTCCCTAATTG AP010779.1_Mylocheilus_caurinus_ ......T........GC....A.....C..T..A..A..G..T..T.....A........T.....T..A..A....... AP011215.1_Gila_sp._1460_mitocho T.....T........GC.G..A.....C..T..A..C..G..T..T..T..A.....G........T.....A....... AP011263.1_Scardinius_erythropht C..C..T.....C...C................A..A..G..C..T.....A..............T..A...T.G..C. AP011267.1_Algansea_lacustris_mi G.....T...T.G...C.T..A........T.....G..C..T..T.....A........T..T.....A..AT...... AP011268.1_Yuriria_alta_mitochon ......T..CT.G...C.T..A..T...........A.....T..T..T..A........C........A..A.....C. AP011273.1_Hybognathus_nuchalis_ T.....T...T.....C.C..A........T........G..T..T..T..A.....G..C..T..T..A..A....... AP011274.1_Couesius_plumbeus_mit C........C..T........A..............A..G..T..T...T.A.....G..T..T..T..A..G....... AP011275.1_Platygobio_gracilis_m C.....T...T.....C.T..A..G..C.....A..A..G..T..T..T..A........T........A..A.....C. AP011277.1_Erimystax_dissimilis_ ...C...G.C......C.C........C.....A..A..C..T..T.....A.....G..C........A..A.....C. AP011279.1_Pimephales_promelas_m G.....T...T.....C.T..A........T........G..T..T..T..A........T.....T..A..AT...... AP011280.1_Clinostomus_elongatus ......T..CT.........................A..G..T..T.....A........T..T..T.....A..G.... AP012079.1_Luxilus_chrysocephalu ......T...T.....C.T...........T.....A.....T..T.....A.....G..T..T..T.....A....... AP012080.1_Macrhybopsis_gelida_m ......A...T.....C.T..A...........A..A..G..T..T..TT.A........T.....T..A..A.....C. AP012083.1_Notropis_atherinoides G..C..T...T.....C.T..A........T.....A..G..T..T..T..T..C.....T..T........G....... AP012084.1_Notropis_baileyi_mito ...C..TG........C.T..A..T.....T..A..G.....T.....TT.A........T..T........A.....C. AP012087.1_Cyprinella_galactura_ ......T...T.....C.T..A...........A..A..C..T..T..T..A.....G..T........A..A..G.... AP012088.1_Hybopsis_lineapunctat G..C..TG.AT.....C.T..A..T...........C.....T..T..T..A........C..T..T..A..A....... AP012090.1_Luxilus_cornutus_mito ......T...T.G...C.T...............G.A.....T..T..T..A........T.....T.....A..G.... AP012091.1_Lythrurus_ardens_mito T..C..T...T.G...C.T..A........T.....C..G..T..T..TT.A.....G..T.....T.....A....... AP012092.1_Lythrurus_fumeus_mito C.........T.G...C.T..A..T........A.....G..T..T..TT.A........T..T..T..A..A....... AP012093.1_Lythrurus_lirus_mitoc T.....T...T.G...C.T..A........T.....C..G..T..T..TT.A..G..G..G..T..T.....A....... AP012094.1_Lythrurus_umbratilis_ T..C..T...T.G...C.T..A..T.....T.....C..G..T..T..TT.A.....G..T.....T.....A....... AP012095.1_Macrhybopsis_meeki_mi ......T...T....CC.T..A...........A..C.....T..T..TT.A........T.....T..A..A.....C. AP012097.1_Notropis_bifrenatus_m ......T...T.....C.T..A..T.....T.....A..G..T..T...T.A..C.....T..T.....A..A..C.... AP012098.1_Pimephales_sp._MCZunc ...C..T..AT.G...C.T..A........T..A..A.....C..T..T..G.....G..T..T..T.....TT.G.... AP012100.1_Notropis_telescopus_m ......T...T.....C.C..A........T.....A..G..T.....TT.A........C.....T..A..A....... AP012101.1_Pimephales_notatus_mi ...C..T..AT.....C.T..A........T.....G.....C..T..T..A.....G..T..T..T.....T..G.... AP012102.1_Pimephales_vigilax_mi ...C..TG.CT....GC.T.....T.....T.....C.....C..T..T..G.....G..T.....T.....AT...... AP012103.1_Pogonichthys_macrolep ......T.........C....A.....C.....A..C..G..T..T..T..A........T.....T.....A....... AP012106.1_Richardsonius_balteat ...C..T..C...........A..............A..G..T..T.....A.....G..C........A..A.....C. AP012108.1_Notropis_chrosomus_mi ......TG........C.C..A........T...G.A..............A..G.....T..T..T..A..A..G.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...C..TG.CT....GC.T.....T.....T.....C.....C..T..T..G.....G..T.....T.....AT...... Pimephales_vigilax_R1S3_________ ...C..TG.CT....GC.T.....T.....T.....C.....C..T..T..G.....G..T.....T.....AT...... DQ536429.1_Notropis_stramineus_m G.....TG.C......C.T..A..T.....T.....A..C..C..T..T..A.....G..T.....T.....A....... JX910141.1_Squaliobarbus_curricu ...C......T.....C....A..T..C.....A..A........T.....T.....G........T............. KC351187.1_Squaliobarbus_curricu ...C......T.....C....A..T..C.....A..A........T.....T.....G........T............. KT278765.1_Pimephales_promelas_m ......T...T.....C.T..A........T.....C..G..T..T..TT.A........T.....T..A..AT...... KT289925.1_Pimephales_promelas_m G.....T...T.....C.T..A........T.....C..G..T..T.....A........T.....T..A..AT.G.... KT424924.1_Rhinichthys_osculus_m ...C..T.....G...C.C........C..............T..T.....A........C.....T..A..A....... KU200257.1_Chanodichthys_ilishae ......T.....G........A.......................T.....T..........................C. MF972070.1_Siphateles_bicolor_mo T.....T..CT....GC.G..A.....C..T.....C.....T..T.....A..............T.....A..G.... MG570407.1_Notropis_chalybaeus_v .......G..T.....C.T..A..T.....T.....A..G..T.....T..A..G.....T.....T..A..A.....C. MG570408.1_Notropis_bifrenatus_v ......T...T.....C.T..A..T.....T.....A..G..T..T...T.A..C.....T..T.....A..A..C.... MG570413.1_Notropis_heterolepis_ G.....TG..T.....C.T..A........T.....G..G..T..T..TT.A........T...........AT...... MG570416.1_Rhinichthys_obtusus_v ...C...G........C.C........C........A..C..T..T..............C..T........A.....C. MG570417.1_Rhinichthys_obtusus_v ...C...G........C.C........C........A..C..T..T..............C..T........A.....C. MG570420.1_Pimephales_notatus_vo ...C..T..AT.G...C.T..A........T..A..A.....C..T..T..G.....G..T..T..T.....TT.G.... MG570443.1_Notropis_hudsonius_is ...C..T..C..G...C.C.........G.T..A..C.....T..T.....A.....G..T..T..A.....AT...... MG570444.1_Rhinichthys_atratulus ...CG.TG.A......C.T........C........A..C..T..T.....A..G.....C..T.....A..A..G..C. MG570445.1_Rhinichthys_atratulus ...CG.TG.G......C.T........C........A..C..T..T.....A..G.....C..T.....A..A..G..C. MG570447.1_Luxilus_cornutus_isol ......T...T.G...C.T...............G.A.....T..T..T..A........T.....T.....A....... MG570449.1_Luxilus_cornutus_isol ......T...T.G...C.T...............G.A.....T..T..T..A........T.....T.....A....... MG570450.1_Pimephales_notatus_is ...C..T..AT.G...C.T..A........T..A..A.....C..T..T..G.....G..T..T..T.....TT.G.... MG570451.1_Notropis_bifrenatus_i ......T...T.....C.T..A..T.....T.....A..G..T..T...T.A..C.....T..T.....A..A..C.... MG570453.1_Exoglossum_maxillingu ...C...G.C......C.C........C.....A..A..C..T..T.....A.....G..C........A..A.....C. MG570454.1_Pimephales_promelas_i G.....T...T.....C.T..A........T.....C..G..T..T.....A........T.....T..A..AT.G.... MG570455.1_Notropis_atherinoides G..C..T...T.....C.T..A........T.....A..G..T..T..T..T..C.....T..T........G....... MG570456.1_Notropis_atherinoides G..C..T...T.....C.T..A........T.....A..G..T..T..T..T..C.....T..T........G....... MG570457.1_Pimephales_notatus_is ...C..T..AT.G...C.T..A........T..A..A.....C..T..T..G.....G..T..T..T.....TT.G.... MG570458.1_Pimephales_notatus_is ...C..T..AT.G...C.T..A........T..A..A.....C..T..T..G.....G..T..T..T.....TT.G.... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ......T.........C.C..A........T.....G..G..C........A..G.....T..T..T..A..A....... MT364325.1_Hybognathus_amarus_mi T.....T...T.G...C.C..A........T........G..T..T..T..A.....G..C..T..T..A..A....... MT501368.1_Gila_cypha_isolate_SN T.....T...T....GC.G..A..............C..G..T..T..T..A.....G........T.....A....... MT501369.1_Notropis_simus_pecose ......TG.CT.....C.T..A........T.....A.....C........G..G.....T...........A....... MT501378.1_Hybognathus_amarus_is T.....T...T.G...C.C..A........T........G..T..T..T..A.....G..C..T..T..A..A....... MT501385.1_Notropis_jemezanus_vo G.....T...T.....C.T..A..T.....T...........T..T..T..T..C..G..T..T..T.....G..G.... MT501391.1_Rhinichthys_osculus_i ...C..T.....G...C.C..A.....C...........C..T..T.....A........C........A..A.....C. MT667239.1_Rhinichthys_osculus_t ......T.....G...C.C..A.....C...........C..T..T.....A........C........A..A.....C. MT667242.1_Luxilus_cornutus_vouc ......T...T.G...C.T...............G.A.....T..T..T..A........T.....T.....A....... MW300340.1_Hybognathus_placitus_ C.....T..CT.....C.T..A.....C..T.....A..T..T.....T..G.....G..T..T..T.....A..G.... MW300341.1_Hybognathus_placitus_ C.....T..CT.....C.T..A.....C..T.....G..T..T.....T..G.....G..T..T..T.....A..G.... NC_013763.1_Mylocheilus_caurinus ......T........GC....A.....C..T..A..A..G..T..T.....A........T.....T..A..A....... NC_033926.1_Opsopoeodus_emiliae_ .........CT.....C.T.....T.....T..A..C.....T..T..TT.A........C.....T.....A....... NC_037008.1_Notropis_chalybaeus_ .......G..T.....C.T..A..T.....T.....A..G..T.....T..A..G.....T.....T..A..A.....C. NC_037009.1_Notropis_heterolepis G.....TG..T.....C.T..A........T.....G..G..T..T..TT.A........T...........AT...... NC_037010.1_Rhinichthys_obtusus_ ...C...G........C.C........C........A..C..T..T..............C..T........A.....C. NC_037014.1_Notropis_hudsonius_i ...C..T..C..G...C.C.........G.T..A..C.....T..T.....A.....G..T..T..A.....AT...... NC_037015.1_Exoglossum_maxilling ...C...G.C......C.C........C.....A..A..C..T..T.....A.....G..C........A..A.....C. NC_054086.1_Ptychocheilus_lucius T.....T..CT.....C....A.....C..T.....C..G.....T..T..A.....G........T.....A....... NC_054257.1_Gila_cypha_isolate_S T.....T...T....GC.G..A..............C..G..T..T..T..A.....G........T.....A....... NC_054259.1_Gila_nigrescens_isol T.....T...T....GC.G..A.....C..T.....C..G..T..T..T..A.....G........T.....A....... NC_054260.1_Hybognathus_amarus_i T.....T...T.G...C.C..A........T........G..T..T..T..A.....G..C..T..T..A..A....... NC_054262.1_Notropis_jemezanus_v G.....T...T.....C.T..A..T.....T...........T..T..T..T..C..G..T..T..T.....G..G.... Pimephales_notatus_R2S3_________ ......T..GT.G...C.T..A........T.....A.....C..T..TT.A........G..T..T..A..A....... Pimephales_tenellus_tenellu_R2S1 G.....T...T.....C.T..A..T........A..A..G..T..T..TT.A........T.....T.....A....... Pimephales_tenellus_parvice_R2S2 G..C..T...T.....C.T..A..T........A..A..G..T..T..TT.A........T.....T..A..A....... Pimephales_notatus_R1S1_________ ......T..GT.G...C.T..A........T..A..A.....C..T..TT.A........G..T..T..A..A....... MG570452.1_Pimephales_promelas_i G.....T...T.....C.T..A........T.....C..G..T..T.....A........T.....T..A..AT.G.... MG570452.1_Pimephales_promelas_S G.....T...T.....C.T..A........T........G..T..T..T..A........T.....T..A..AT...... AB626850.1_Megalobrama_terminali CCTACTCATCTGTCAGTCACATAGGGCTTGTAGCGGGCGGAATCCTAATCCAAACCCCATGAGGATTCTCAGGAGCTATT AP010779.1_Mylocheilus_caurinus_ .......C.....T..C..T.....A..C.....C..G..T..T.....T..............G........G..A..C AP011215.1_Gila_sp._1460_mitocho ....T........A..C..T..G..A..C.....A..G..T..TT....T..............C...........A..C AP011263.1_Scardinius_erythropht .......C.....A..C........C..C..G..C..G.....T..G..T.................T..G.....A..C AP011267.1_Algansea_lacustris_mi .T.....C.....A...........A..C.....A..G..C..T.....T.................T.....G..A..C AP011268.1_Yuriria_alta_mitochon .T.....C..C..A..C..T.....A........A..G..G.....G.C.........G.....G...........A... AP011273.1_Hybognathus_nuchalis_ .......C.....G..C........C........A..A.....T....................C...A.......A... AP011274.1_Couesius_plumbeus_mit .......C.....T..C..T..G...........A..A..T..T..............C.....G..T.....G..A... AP011275.1_Platygobio_gracilis_m .T.....C.....A..C........A........A..G..C........T..G.....C.....G...........A..C AP011277.1_Erimystax_dissimilis_ .......C.....A..C..T.....A........A..A..C.....G..T.................T........A..C AP011279.1_Pimephales_promelas_m ....T..C.....A..C.....G..C.....G..A..A..G..............A........T..TA.......A... AP011280.1_Clinostomus_elongatus .A.....C..C..G..C........C..C.....A..A..T..T...G.T..........................A..C AP012079.1_Luxilus_chrysocephalu .T.....C.....A...........C........A..A.....T...........T.....G......A....T..A... AP012080.1_Macrhybopsis_gelida_m .T.....C.....T..C........A........A..A..C..T.....T........T..G........T.....A... AP012083.1_Notropis_atherinoides .A.....C..A..A........G..C........A..G..G..T...........T........G.....G..G..A... AP012084.1_Notropis_baileyi_mito .T.....C.....A..C.....G..C........A..G.....T..G.....G..T.....G..G..TA.......G... AP012087.1_Cyprinella_galactura_ .......C..C..A..C........C.....G..A........TT...................T..TA.G..G..A... AP012088.1_Hybopsis_lineapunctat .......C.....G..C........C........C..G.....T..G........T........T...A.......A... AP012090.1_Luxilus_cornutus_mito .T.....C.....A........G..C...........G.....T........G........G......A.G..C..A... AP012091.1_Lythrurus_ardens_mito .T.....C.....A.....T.....C........A..A.....T...G.......T.................G..A... AP012092.1_Lythrurus_fumeus_mito .T.....C.....T.....T.....C........A..G.....T...G................T...........A... AP012093.1_Lythrurus_lirus_mitoc .T.....C.....A.....T.....C........A..G..G..T........G...........G........G..A... AP012094.1_Lythrurus_umbratilis_ .T.....C.....A.....T.....C........A..A.....T...G.......T.................G..A... AP012095.1_Macrhybopsis_meeki_mi .T.....C.....A...........A........A..A..C........T........C..G........T..G..A... AP012097.1_Notropis_bifrenatus_m .T.....C.....A.....T..G..C........A..G.....TT................G..G...........A... AP012098.1_Pimephales_sp._MCZunc .......C..C..A..C........C........A..G.....TT.......G.....T..G..C..TA.......A... AP012100.1_Notropis_telescopus_m .T.....C.....A..C.....G..C.....G..A..G..C..T........G..T.....G..C...A.......A... AP012101.1_Pimephales_notatus_mi .......C..C..A..C.....G..C........A..G.....TT.......G.....T.....C..TA.......A... AP012102.1_Pimephales_vigilax_mi ....T..C.....A..C..T..G..C........A.....T..T..............C.....T...A.......A... AP012103.1_Pogonichthys_macrolep .......C.....A..C..T.....A..C.....C..G..C..T.....T..........................A..C AP012106.1_Richardsonius_balteat .......C.....A.....T..G...........A..A..C.............................G.....A... AP012108.1_Notropis_chrosomus_mi .T.....C.....G..C........T........A..A.....T..C.....................A.G.....A... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....T..C.....A..C..T..G..C........A.....T..T..............C.....T...A.......A... Pimephales_vigilax_R1S3_________ ....T..C.....A..C..T..G..C........A.....T..T..............C.....T...A.......A... DQ536429.1_Notropis_stramineus_m .T.....C.....T........G..C..C........G..G..T...G.......T........C...A....C..C... JX910141.1_Squaliobarbus_curricu .............A..C.....G...........A..T.....T..G..........................G..C... KC351187.1_Squaliobarbus_curricu .............A..C.....G..A........A..T.....T..G..........................G..C... KT278765.1_Pimephales_promelas_m ....T..C.....A..C.....G..C.....G..A..A..G..............G........T..TA.......A... KT289925.1_Pimephales_promelas_m ....T..C.....A..C.....G..C.....G..A..A..G..............A........T..TA.......A... KT424924.1_Rhinichthys_osculus_m .......C.....T.....T..............A..G..C..T.....T........C..............G..A... KU200257.1_Chanodichthys_ilishae ................C.....G..A...........A.....T.............................G...... MF972070.1_Siphateles_bicolor_mo .T..T........A..C........A.....G..A..G..C..TT....T........C.....C.....G.....A... MG570407.1_Notropis_chalybaeus_v .......C.....A.....T.....C........A..G.....T.......................TA.G.....A... MG570408.1_Notropis_bifrenatus_v .T.....C.....A.....T..G..C........A..G.....TT................G..G...........A... MG570413.1_Notropis_heterolepis_ .......C.....A..C.....G...........A..G.....T.......................T..G.....A... MG570416.1_Rhinichthys_obtusus_v .T.....C.....A..C..T..G..C........A..G..C..T..C..T........C..G..G...........A... MG570417.1_Rhinichthys_obtusus_v .T.....C.....A..C..T..G..C........A..G..C..T..C..T........C..G..G...........A... MG570420.1_Pimephales_notatus_vo .......C..C..A..C........C........A..G.....TT.......G.....T..G..C..TA.......A... MG570443.1_Notropis_hudsonius_is .T.....C.....A.....T..G..T..C....TT..T.....T..G.C...............T..T........A..C MG570444.1_Rhinichthys_atratulus .T.....C.....G..C..T..............A..G..C..T..C..T..G.....C..G........G..G..A... MG570445.1_Rhinichthys_atratulus .T.....C.....G..C..T..............A..G..C..T..C..T..G.....C..G........G..G..A... MG570447.1_Luxilus_cornutus_isol .T.....C.....A........G..C...........G.....T........G........G......A.G..C..A... MG570449.1_Luxilus_cornutus_isol .T.....C.....A........G..C...........G.....T........G........G......A.G..C..A... MG570450.1_Pimephales_notatus_is .......C..C..A..C........C........A..G.....TT.......G.....T..G..C..TA.......A... MG570451.1_Notropis_bifrenatus_i .T.....C.....A.....T..G..C........A..G.....TT................G..G...........A... MG570453.1_Exoglossum_maxillingu .......C.....A..C..T.....A........A..A..C.....G..T.................T........A..C MG570454.1_Pimephales_promelas_i ....T..C.....A..C.....G..C.....G..A..A..G..............A........T..TA.......A... MG570455.1_Notropis_atherinoides .A.....C..A..A........G..T........A..G..G..T........G..T........G.....G..G..A... MG570456.1_Notropis_atherinoides .A.....C..A..A........G..C........A..G..G..T...........T........G.....G..G..A... MG570457.1_Pimephales_notatus_is .......C..C..A..C........C........A..G.....TT.......G.....T..G..C..TA.......A... MG570458.1_Pimephales_notatus_is .......C..C..A..C........C........A..G.....TT.......G.....T..G..C..TA.......A... MK421554.1_Parabramis_pekinensis ..........C..T..C........A........A..T.....T...........T.................G...... MT333789.1_Notropis_lutipinnis_v .T.....C.....A...........C........A..G.....T.....T..................A.G..G..C... MT364325.1_Hybognathus_amarus_mi .......C.....A..C.....G..T........A..G.....T........G...........C...A....G..A... MT501368.1_Gila_cypha_isolate_SN ....T........A..C..T.....A...........G..T..TT....T..............C........G..A..C MT501369.1_Notropis_simus_pecose .T.....C.....T..C..T.....C........A..G.....TT..........T..G.....C..TA.G.....A..C MT501378.1_Hybognathus_amarus_is .......C.....A..C.....G..T........A..G.....T........G...........C...A....G..A... MT501385.1_Notropis_jemezanus_vo .A.....C..............G..C..C.....A........T........G..T.....G..G.....G..G..A... MT501391.1_Rhinichthys_osculus_i ....T..C.....T..C..T.....A........A..A..T..T..T..T........C.....G...........A..C MT667239.1_Rhinichthys_osculus_t ....T..C.....T..C..T.....A........A..A..T..T..T..T........C.....G...........A..C MT667242.1_Luxilus_cornutus_vouc .T.....C.....A........G..C...........G.....T........G........G......A.G..C..A... MW300340.1_Hybognathus_placitus_ .T.....C.....A..C..T.....C........A..G.....T...G....G..T........C...A....G..G... MW300341.1_Hybognathus_placitus_ .T.....C.....A..C..T.....C........A..G.....T...G....G..T........C...A.......G... NC_013763.1_Mylocheilus_caurinus .......C.....T..C..T.....A..C.....C..G..T..T.....T..............G........G..A..C NC_033926.1_Opsopoeodus_emiliae_ .......C.....A..C..T.....T..C.....A........T..............T..G..C...A....G..A... NC_037008.1_Notropis_chalybaeus_ .......C.....A.....T.....C........A..G.....T.......................TA.G.....A... NC_037009.1_Notropis_heterolepis .......C.....A..C.....G...........A..G.....T.......................T..G.....A... NC_037010.1_Rhinichthys_obtusus_ .T.....C.....A..C..T..G..C........A..G..C..T..C..T........C..G..G...........A... NC_037014.1_Notropis_hudsonius_i .T.....C.....A.....T..G..T..C....TT..T.....T..G.C...............T..T........A..C NC_037015.1_Exoglossum_maxilling .......C.....A..C..T.....A........A..A..C.....G..T.................T........A..C NC_054086.1_Ptychocheilus_lucius ....T........A..C.................A..G..T..T..G..T..............C...........A..C NC_054257.1_Gila_cypha_isolate_S ....T........A..C..T.....A...........G..T..TT....T..............C........G..A..C NC_054259.1_Gila_nigrescens_isol .............G..C..T.....A..C........G..T..TT....T..............C...........A..C NC_054260.1_Hybognathus_amarus_i .......C.....A..C.....G..T........A..G.....T........G...........C...A....G..A... NC_054262.1_Notropis_jemezanus_v .A.....C..............G..C..C.....A........T........G..T.....G..G.....G..G..A... Pimephales_notatus_R2S3_________ .......C..C..A.....T.....C........A..G.....T.................G..C..TA.G.....A... Pimephales_tenellus_tenellu_R2S1 .......C.....A..C........C........A..A...........T..............C........G..A... Pimephales_tenellus_parvice_R2S2 .......C.....A..C..T..G..C........A..A...........T..............C........G..A... Pimephales_notatus_R1S1_________ .......C..C..A.....T.....C........A..G.....T.................G..C..TA.G.....A... MG570452.1_Pimephales_promelas_i ....T..C.....A..C.....G..C.....G..A..A..G..............A........T..TA.......A... MG570452.1_Pimephales_promelas_S ....T..C.....A..C.....G..C.....G..A..A..G..............A........T..TA.......A... AB626850.1_Megalobrama_terminali ATTCTAATAATCGCCCACGGACTAGTGTCTTCAATACTATTCTGCTTAGCCAATACAGCCTATGAACGAACCCATAGCCG AP010779.1_Mylocheilus_caurinus_ ........G..T.....T..CT....A..C..T........T...C....T..............G.....T.....T.. AP011215.1_Gila_sp._1460_mitocho ...T.......T.....T..T.....A..C..T..GT....T...C.......C..G..............A........ AP011263.1_Scardinius_erythropht .....C..............CT....A.....C..............G..T.....G.....C........T.....T.. AP011267.1_Algansea_lacustris_mi ..C..G.....T.....T..CT....A..C.................G...........T.....G..G.....C..T.. AP011268.1_Yuriria_alta_mitochon ..C..T.....T.....T..C.....A..C........G....................T.................T.. AP011273.1_Hybognathus_nuchalis_ .....T..G..T..T..T..C.....A..C..T.....G........G..T.....G..T.....G...........T.. AP011274.1_Couesius_plumbeus_mit ...........T..T..T..C.....A..C..T...T.......T.....T........A..C.....G.....C..T.. AP011275.1_Platygobio_gracilis_m ...........T.....T...T....C..C..T...........T........C....................C..T.. AP011277.1_Erimystax_dissimilis_ .........G.T.....T...T....A..C..C............C..........G..T..C..G...........T.. AP011279.1_Pimephales_promelas_m .....T.....T.....T..C.....A..C..............TC....T.....G..T..............C..... AP011280.1_Clinostomus_elongatus ..C........T..G..T..CT....A..C..T........T..T.....T.....G........G........C..... AP012079.1_Luxilus_chrysocephalu ..C..T.....T........C.....A..C..T..G..G........G..T........T..C..............T.. AP012080.1_Macrhybopsis_gelida_m ...T.......T.....T..TT....A..C..T.....G...........T..C.....T.....G.....T..C..T.. AP012083.1_Notropis_atherinoides ..C..T..............C.....A..C..C...........TC.G....................G........T.. AP012084.1_Notropis_baileyi_mito .....T..G..T..T.....C........C..T...T.G........G..T........T..C........T.....T.. AP012087.1_Cyprinella_galactura_ ..C..C..G........T..T.....A..C..T.....G......C....T..C.................T.....T.. AP012088.1_Hybopsis_lineapunctat ..C..T.....T..T.....C.....A..C..T.....G......C....T........T..C..............T.. AP012090.1_Luxilus_cornutus_mito ..C..T..GG.T.....T..C........C........G......C....T.....G..T.................... AP012091.1_Lythrurus_ardens_mito ..C..T.....T........C.....A..C..C..G..G...........T........T..C..G...........T.. AP012092.1_Lythrurus_fumeus_mito .....C..G..T........C........C..T.....G........G...........T..C..G.....T.....T.. AP012093.1_Lythrurus_lirus_mitoc ..C..T..G..T........C.....A..C.....G..............T........T..C..............T.. AP012094.1_Lythrurus_umbratilis_ ..C..T.....T........C.....A..C..C..G..G...........T........T..C..G...........T.. AP012095.1_Macrhybopsis_meeki_mi ...........T.....T..TT....A..C..T.....G.....T.....T........T.....G...........T.. AP012097.1_Notropis_bifrenatus_m .....C.....T........C..G..A..A..C...........T.....A.....G....................T.. AP012098.1_Pimephales_sp._MCZunc ..C..T..G.....A.....C.....A..C........C.....T.....T........T..C..............T.. AP012100.1_Notropis_telescopus_m ..C..T.....T.....T..C..G..A..C..C...T.G........G..T..C.....T........G.....C..T.. AP012101.1_Pimephales_notatus_mi ..C..T..G.....A.....C.....A..C........C.....T.....T........T..C..............T.. AP012102.1_Pimephales_vigilax_mi .....T.....T..T..T..TT...CA..C.....G..C......C....T........T.................... AP012103.1_Pogonichthys_macrolep ...........T........CT....A.....C.................T.....G........G.....T........ AP012106.1_Richardsonius_balteat ..C........T..T..T..CT....A..C..T...........T.....T..C........C................. AP012108.1_Notropis_chrosomus_mi ..C..T...G.T........T.....T.......................T........T..C........G.....T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .....T.....T..T..T..TT...CA..C.....G..C......C....T........T.................... Pimephales_vigilax_R1S3_________ .....T.....T..T..T..TT...CA..C.....G..C......C....T........T.................... DQ536429.1_Notropis_stramineus_m .....T..G........T..C.....A..C..T.....G......C.G..T.....G..T..C..G.............. JX910141.1_Squaliobarbus_curricu .............................C.................G....................C.....C..... KC351187.1_Squaliobarbus_curricu .............................C.................G....................C.....C..... KT278765.1_Pimephales_promelas_m ..C..T.....T.....T..C.....A..C......T.G.....TC....T.....G..T..............C..... KT289925.1_Pimephales_promelas_m ..C..T.....T.....T..C.....A..C...............C....T.....G..T.................... KT424924.1_Rhinichthys_osculus_m ...........T.........T....T..C..T...........TC....T........T...........A........ KU200257.1_Chanodichthys_ilishae .....................................................C....................C..... MF972070.1_Siphateles_bicolor_mo ...T....G..T.....T..C..G.....C..T...T........C.......C.....T...........A.....T.. MG570407.1_Notropis_chalybaeus_v .....T.....T........C.....A..C..T..............G..T..C.....T..C........T........ MG570408.1_Notropis_bifrenatus_v .....C.....T........C..G..A..A..C...........T.....A.....G....................T.. MG570413.1_Notropis_heterolepis_ ........G..T........C.....A..C..T.................T........T..C..............T.. MG570416.1_Rhinichthys_obtusus_v ...........T..T...........A..C..T............C....T.....C..G........G........... MG570417.1_Rhinichthys_obtusus_v ...........T..T...........A..C..T............C....T.....C..G........G........... MG570420.1_Pimephales_notatus_vo ..C..T..G.....A.....C.....A..C........C.....T.....T........T..C..............T.. MG570443.1_Notropis_hudsonius_is ..C..T..GG.T........CT....A..C..T............C....T...........C...........C..T.. MG570444.1_Rhinichthys_atratulus ...........T..............A..C..C...........TC....T..C..C..T........G........T.. MG570445.1_Rhinichthys_atratulus ...........T..............A..C..C...........TC....T..C..C..T........G........T.. MG570447.1_Luxilus_cornutus_isol ..C..T..GG.T.....T..C........C........G......C....T........T.................... MG570449.1_Luxilus_cornutus_isol ..C..T..GG.T.....T..C........C........G......C....T........T.................... MG570450.1_Pimephales_notatus_is ..C..T..G.....A.....C.....A..C........C.....T.....T........T..C..............T.. MG570451.1_Notropis_bifrenatus_i .....C.....T........C..G..A..A..C...........T.....A.....G....................T.. MG570453.1_Exoglossum_maxillingu .........G.T.....T...T....A..C..C............C..........G..T..C..G...........T.. MG570454.1_Pimephales_promelas_i ..C..T.....T.....T..C.....A..C...............C....T.....G..T.................... MG570455.1_Notropis_atherinoides ..C..T..............C.....A..C..C...........TC..........G...........G........T.. MG570456.1_Notropis_atherinoides ..C..T..............C.....A..C..C...........TC......................G........T.. MG570457.1_Pimephales_notatus_is ..C..T..G.....A.....C.....A..C........C.....T.....T........T..C..............T.. MG570458.1_Pimephales_notatus_is ..C..T..G.....A.....C.....A..C........C.....T.....T........T..C..............T.. MK421554.1_Parabramis_pekinensis ...T.................................................C.......................... MT333789.1_Notropis_lutipinnis_v ..C..T.....T........T.....C..C........G........G..T........T..C..............T.. MT364325.1_Hybognathus_amarus_mi .....C.....T........C..G..A..C..T.....G........G..T........T........G........T.. MT501368.1_Gila_cypha_isolate_SN ...T.............T..T.....A..C..T..GT....T...C.G.....C..G..............G.....T.. MT501369.1_Notropis_simus_pecose ..C..T..G..T.....T..C.....A..C..T..GT..........G..T........T..C.....G.....C..... MT501378.1_Hybognathus_amarus_is .....C.....T........C..G..A..C..T.....G........G..T........T........G........T.. MT501385.1_Notropis_jemezanus_vo ..C..C..G...........C.....A..C..C.....G.....TC.C........G.................C..T.. MT501391.1_Rhinichthys_osculus_i G.......G..T.........T....A..C..T...T.......TC....T..C..G.....C..............T.. MT667239.1_Rhinichthys_osculus_t G.......G..T.........T....A..C..T...T.......TC....T..C..G.....C..............T.. MT667242.1_Luxilus_cornutus_vouc ..C..T..GG.T.....T..C........C........G......C....T........T.................... MW300340.1_Hybognathus_placitus_ .....T.....T........C.....A.....C.....G........G..T.....G..T..C..G..G........T.. MW300341.1_Hybognathus_placitus_ .....T.....T........C.....A.....C.....G........G..T.....G..T..C..G..G........T.. NC_013763.1_Mylocheilus_caurinus ........G..T.....T..CT....A..C..T........T...C....T..............G.....T.....T.. NC_033926.1_Opsopoeodus_emiliae_ ..C..T.....T.....T..C.....A..C........T......C....T........T.....G..G........... NC_037008.1_Notropis_chalybaeus_ .....T.....T........C.....A..C..T..............G..T..C.....T..C........T........ NC_037009.1_Notropis_heterolepis ........G..T........C.....A..C..T.................T........T..C..............T.. NC_037010.1_Rhinichthys_obtusus_ ...........T..T...........A..C..T............C....T.....C..G........G........... NC_037014.1_Notropis_hudsonius_i ..C..T..GG.T........CT....A..C..T............C....T...........C...........C..T.. NC_037015.1_Exoglossum_maxilling .........G.T.....T...T....A..C..C............C..........G..T..C..G...........T.. NC_054086.1_Ptychocheilus_lucius ...........T..T..T..T.....A..C..C...T....T...C.......C.................A........ NC_054257.1_Gila_cypha_isolate_S ...T.......T.....T..T.....A..C..T..GT....T...C.G.....C..G..............G.....T.. NC_054259.1_Gila_nigrescens_isol ...T.......T.....T..T.....A..C..T..GT....T...C.......C..G..............G........ NC_054260.1_Hybognathus_amarus_i .....C.....T........C..G..A..C..T.....G........G..T........T........G........T.. NC_054262.1_Notropis_jemezanus_v ..C..C..GG..........C.....A..C..C.....G.....TC.C........G.................C..T.. Pimephales_notatus_R2S3_________ ..C..T..GG....A.....C.....A..C........T......C....T........T..C..............T.. Pimephales_tenellus_tenellu_R2S1 .....T........A..T..C..G..A..C..............TC.G.....C.....T.................... Pimephales_tenellus_parvice_R2S2 .....T........A..T..C..G..A..C..............TC.G.....C.....T.................... Pimephales_notatus_R1S1_________ ..C..T..GG....A.....C.....A..C........T......C....T........T..C..............T.. MG570452.1_Pimephales_promelas_i ..C..T.....T.....T..C.....A..C...............C....T.....G..T.................... MG570452.1_Pimephales_promelas_S .....T.....T.....T..C.....A..C..............TC....T.....G..T..............C..... AB626850.1_Megalobrama_terminali AACCATAATTCTTGCCCGAGGATTACAAATAATCTTCCCGTTAACAGCAGTGTGATGATTTATCGCCAACCTGGCCAATC AP010779.1_Mylocheilus_caurinus_ .......G.......T...........G...G.T.....AC..........A..G.....C..T..T.....A..T.... AP011215.1_Gila_sp._1460_mitocho ...............T..G..CC.....G....T..T..AC...................C..T..T.....A.....C. AP011263.1_Scardinius_erythropht ...A.................G.................AC..........C...........T..T..T..A.....C. AP011267.1_Algansea_lacustris_mi G......G.C..C..G.....C......G....T.....A...........T...........T..A.....A.....CT AP011268.1_Yuriria_alta_mitochon ...T...G.C..C..T............G....T..T..A...........C........C..T..A.....A.....C. AP011273.1_Hybognathus_nuchalis_ ...T...G....C..T.....C......G....T..T..A........T..C........C.....A.....A.....CT AP011274.1_Couesius_plumbeus_mit ...............T......C.C..GG....T..T..AC..........A........C..T..T...T....T.... AP011275.1_Platygobio_gracilis_m G.....GG.............G......G....T..T..CC...................C..T..A...........CT AP011277.1_Erimystax_dissimilis_ .......G.C.....T..G..C......G....T.....C....................C..T..T.....A.....C. AP011279.1_Pimephales_promelas_m G..T...G....C..T.....T......G....T.....T........T..C........C..T..A..T..A..T..C. AP011280.1_Clinostomus_elongatus .......G.C.....A............G....T..T..C...........T...........T..T.....A..T..C. AP012079.1_Luxilus_chrysocephalu .......G.C..C..T.....CC.....G....T..T..AC.T.....C..C........C..T..T.....A.....CT AP012080.1_Macrhybopsis_gelida_m ............C..T......C.....G....T..T..A...........A...........T..T..TT.A..T..CT AP012083.1_Notropis_atherinoides .......G.C..C..T..G..C.....GG....T..T..AC.G.....C..C...........T..A..T..A..T..C. AP012084.1_Notropis_baileyi_mito .......G....C..T.....CC.G...G....T.....A.....C..C..C........C..T..A...T.A..T..C. AP012087.1_Cyprinella_galactura_ ......G..C..C..T.....CC.....G....T.....AC..........C..G...........A........T..C. AP012088.1_Hybopsis_lineapunctat ...T.....C..C..T..G..C.....GG....T..T..A........T..C.........G.T..A..T..A.....C. AP012090.1_Luxilus_cornutus_mito .......G....C..T.....C......G....T..T..AC.T.....C..C..G.....C..T..T.....A.....C. AP012091.1_Lythrurus_ardens_mito .......G.C.....T.....T......G.T..T.....AC.......T..T........C..T..A..T..A.....C. AP012092.1_Lythrurus_fumeus_mito G..T...G....C..T..G..T......G....T..............T..C..G.....C..T..A..TT.A..T..C. AP012093.1_Lythrurus_lirus_mitoc .......G.C.....T.....C......G.C..T.....AC.......T..T........CG.T..A..T..A.....C. AP012094.1_Lythrurus_umbratilis_ .......G.C.....T.....T......G.T..T.....AC.......T..T........C..T..A..T..A...C.C. AP012095.1_Macrhybopsis_meeki_mi ............C..T......C.....G....T.....A...........C...........T..T...T.A..T..CT AP012097.1_Notropis_bifrenatus_m ...T...........T.....C..G...G.G..T..T..TC....G..T...........C..T..A..T..A.....C. AP012098.1_Pimephales_sp._MCZunc ...T..G..AT.A..T.....T......G....T.....T........C..C........C..T..A..T..A..T..C. AP012100.1_Notropis_telescopus_m ...T..GG....C..T.....C......G.G..T.....A.....C..C..C...........T..A.....A..T..C. AP012101.1_Pimephales_notatus_mi ...T...G.AT.A..T.....T......G....T.....T........C..C........C..T..A..T..A..T..C. AP012102.1_Pimephales_vigilax_mi ...T........A..T.....CC.....G....T.....T........T..C...........T..A..T..A.....CT AP012103.1_Pogonichthys_macrolep G..............T..G............G.......AC..........A........C...........A....... AP012106.1_Richardsonius_balteat .......G.......T.................T..T..AC....G.....T...........T..T........T..C. AP012108.1_Notropis_chrosomus_mi .......G.............C......G....T.....T..GG....T..C...........T..A...T....T..C. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...T........A..T.....CC.....G....T.....T........T..C...........T..A..T..A.....CT Pimephales_vigilax_R1S3_________ ...T........A..T.....CC.....G....T.....T........T..C...........T..A..T..A.....CT DQ536429.1_Notropis_stramineus_m ...T..GG.......T..G..C..G...G.G..T.....A........T..C.....G.....T..A.....A.....CT JX910141.1_Squaliobarbus_curricu .........C.....T.....C.................CC..........C..G.....C.........T.A.....C. KC351187.1_Squaliobarbus_curricu .........C.....T.....C.................CC..........C..G.....C.........T.A.....C. KT278765.1_Pimephales_promelas_m G..T...G....C..T.....T.....GG....T.....T........T..C........C..T..A..T..A.....C. KT289925.1_Pimephales_promelas_m G..T...G....C..T.....G......G....T.....T........T..C........C..T..A..T..A.....C. KT424924.1_Rhinichthys_osculus_m ...T...G.C.....T...........GG..G.......AC.GG.G.................T......T.......CT KU200257.1_Chanodichthys_ilishae ...............G......C..........T.....A.....G.....A........C...........A.....C. MF972070.1_Siphateles_bicolor_mo G........C.....T..G..CC....G........T..AC.........CC.....G.....T..T.....C.....C. MG570407.1_Notropis_chalybaeus_v .......G.C..C........CC.....G....T..T...C.C..C..C..C........C..T..A...T.A..T..C. MG570408.1_Notropis_bifrenatus_v ...T...........T.....C..G...G.G..T..T..TC....G..T...........C..T..A..T..A.....C. MG570413.1_Notropis_heterolepis_ .......G....C..T.....C......G....T..T..AC.......C..A........C..T..A.....A.....C. MG570416.1_Rhinichthys_obtusus_v G..T...G....C..T........G...G.......T...C.G....................T..A...........C. MG570417.1_Rhinichthys_obtusus_v G..T...G....C..T........G...G.......T...C.G....................T..A...........C. MG570420.1_Pimephales_notatus_vo ...T..G..AT.A..T.....T......G....T.....T........C..C........C..T..A..T..A..T..C. MG570443.1_Notropis_hudsonius_is G......G.......T............G....T.....AC.......G..C..............A..T........C. MG570444.1_Rhinichthys_atratulus G..T..GG.......T...........GG.......T..AC......................T..A...........C. MG570445.1_Rhinichthys_atratulus G..T..GG.......T...........GG.......T..AC......................T..A...........C. MG570447.1_Luxilus_cornutus_isol .......G....C..T.....C......G....T..T..AC.T.....C..C..G.....C..T..T.....A..T..C. MG570449.1_Luxilus_cornutus_isol .......G....C..T.....C......G....T..T..AC.T.....C..C..G.....C..T..T.....A..T..C. MG570450.1_Pimephales_notatus_is ...T..G..AT.A..T.....T......G....T.....T........C..C........C..T..A..T..A..T..C. MG570451.1_Notropis_bifrenatus_i ...T...........T.....C..G...G.G..T..T..TC....G..T...........C..T..A..T..A.....C. MG570453.1_Exoglossum_maxillingu .......G.C.....T.....C......G....T.....C....................C..T..T.....A.....C. MG570454.1_Pimephales_promelas_i G..T...G....C..T.....G......G....T.....T........T..C........C..T..A..T..A.....C. MG570455.1_Notropis_atherinoides .......G.C..C..T.....C.....GG.G..T..T..AC.G.....C..C........C..T..A..T..A..T..C. MG570456.1_Notropis_atherinoides .......G.C..C..T..G..C.....GG.G..T..T..AC.G.....C..C...........T..A..T..A..T..C. MG570457.1_Pimephales_notatus_is ...T..G..AT.A..T.....T......G....T.....T........C..C........C..T..A..T..A..T..C. MG570458.1_Pimephales_notatus_is ...T..G..AT.A..T.....T......G....T.....T........C..C........C..T..A..T..A..T..C. MK421554.1_Parabramis_pekinensis ....................................T..T........G..A....................A.....C. MT333789.1_Notropis_lutipinnis_v .......G....C..T.....T......G....T..T..C.....T..T..C..G.....C..T..A...T.A..T..CT MT364325.1_Hybognathus_amarus_mi ...T...G....C........CC.....G....T..T..A........T..T........CG....A.....A.....CT MT501368.1_Gila_cypha_isolate_SN ...............T.....CC.....G....T..T...C....G..............C..T..T...........C. MT501369.1_Notropis_simus_pecose .......G....G..T..G..C......G....T..T..A..GG....T..C.....G.....T..A...T.A..T..C. MT501378.1_Hybognathus_amarus_is ...T...G....C........CC.....G....T..T..A........T..T........CG....A.....A.....CT MT501385.1_Notropis_jemezanus_vo G..T...G.C..C..T..G.........G....T..T..AC.G.....C..C..G.....C..T..A..T..A..T..C. MT501391.1_Rhinichthys_osculus_i ...T...C.C.....T..G.........G..G....T..A..G....................T..G...T.......CT MT667239.1_Rhinichthys_osculus_t ...T...C.C.....T..G.........G..G....T..A..G...........G........T..G...T.......CT MT667242.1_Luxilus_cornutus_vouc .......G....C..T.....C......G....T..T..AC.T.....C..C..G.....C..T..T.....A..T..C. MW300340.1_Hybognathus_placitus_ ...A...G....C..T.....CC....GG....T..T..AC....C..T..C.....G..C.....T.....A.....CT MW300341.1_Hybognathus_placitus_ ...A...G....C..T.....CC....GG....T..T..AC....C..T..C..G..G..C.....T.....A.....CT NC_013763.1_Mylocheilus_caurinus .......G.......T...........G...G.T.....AC..........A..G.....C..T..T.....A..T.... NC_033926.1_Opsopoeodus_emiliae_ ..TT...G.C...........CC.....G....T.....T......A.TA.C..........CT..A.....A..T..C. NC_037008.1_Notropis_chalybaeus_ .......G.C..C........CC.....G....T..T...C.C..C..C..C........C..T..A...T.A..T..C. NC_037009.1_Notropis_heterolepis .......G....C..T.....C......G....T..T..AC.......C..A........C..T..A.....A.....C. NC_037010.1_Rhinichthys_obtusus_ G..T...G....C..T........G...G.......T...C.G....................T..A...........C. NC_037014.1_Notropis_hudsonius_i G......G.......T............G....T.....AC.......G..C..............A..T........C. NC_037015.1_Exoglossum_maxilling .......G.C.....T.....C......G....T.....C....................C..T..T.....A.....C. NC_054086.1_Ptychocheilus_lucius ...............T.....CC.G...G....T..T..AC.G.......................T.....A.....C. NC_054257.1_Gila_cypha_isolate_S ...............T.....CC.....G....T..T...C....G..............C..T..T...........C. NC_054259.1_Gila_nigrescens_isol ...............T.....CC.....G....T..T..AC...................C..T..T.....A.....C. NC_054260.1_Hybognathus_amarus_i ...T...G....C........CC.....G....T..T..A........T..T........CG....A.....A.....CT NC_054262.1_Notropis_jemezanus_v G..T...G.C..C..T..G.........G....T..T..AC.G.....C..C..G.....C..T..A..T..A..T..C. Pimephales_notatus_R2S3_________ .........AT.A........T......G....T.....C........C..C........C..T..A..TT.A.....C. Pimephales_tenellus_tenellu_R2S1 .......G....C..T.....TC.G...G.G..T.....T........CA.C........C..T..A..T..A.....C. Pimephales_tenellus_parvice_R2S2 .......G....C..T.....TC.....G.G..T.....T........CA.C.....G..C..T..A..T..A..T..C. Pimephales_notatus_R1S1_________ .........AT.A........T......G....T.....C........C..C........C..T..A..TT.A.....C. MG570452.1_Pimephales_promelas_i G..T...G....C..T.....G......G....T.....T........T..C........C..T..A..T..A.....C. MG570452.1_Pimephales_promelas_S G..T...G....C..T.....T......G....T.....T........T..C........C..T..A..T..A..T..C. AB626850.1_Megalobrama_terminali TAGCACTACCCCCACTACCTAACCTGATAGGAGAACTAATAATTATTACAACACTATTCAACTGATCACCATGAACTATT AP010779.1_Mylocheilus_caurinus_ .....T.......G..T.....TT.A..G..G.....T..............C.....T........C..C.....C..C AP011215.1_Gila_sp._1460_mitocho .G...T....A..C..C........A...........C..............C.....T........C..C.....C... AP011263.1_Scardinius_erythropht .G........A..C.....C...T.......G..G..T.....C........C..T...........T........C... AP011267.1_Algansea_lacustris_mi .............G..C........A...........T..G.....C..G..C..C..T........C..T......... AP011268.1_Yuriria_alta_mitochon .......C........C.....T..A.....G.....T.....C..C.....C..C..T.G......C............ AP011273.1_Hybognathus_nuchalis_ .......T..T.....T........C...........T........C.....T..C..T.G......C..C......... AP011274.1_Couesius_plumbeus_mit ..........T..C..C..C.....A.....G.....C..............C.......G...G..T..G.....C..C AP011275.1_Platygobio_gracilis_m ....G...........C........A........G..T..G.....C........C..T.G......C..C......... AP011277.1_Erimystax_dissimilis_ .......G.....G..C........A.....G.....T..............C...C.T.....G..C..C.....C... AP011279.1_Pimephales_promelas_m ..........T........C.....A..G..G.....T...........C..C..C..T.G......C..T.....C..C AP011280.1_Clinostomus_elongatus .....T..........C.....T..A........G..T..G.....C.....C.....T........C..C..G...... AP012079.1_Luxilus_chrysocephalu .G..............T........A...........T..G...........T..C..T.G......C..C.....C... AP012080.1_Macrhybopsis_gelida_m ................C........A...........T........C........C..T.G......C..T.....C... AP012083.1_Notropis_atherinoides .......G..A..C..T........T...........T..G.....C.....T..C..T.G...G..C..C......... AP012084.1_Notropis_baileyi_mito ................C........A..G........T..............T..C....G......C..C......... AP012087.1_Cyprinella_galactura_ .......C..T..C..T....................C..............T..C..T.G...G..G..C.....C..C AP012088.1_Hybopsis_lineapunctat .......T........T........A...........T..G..C..C........C..T.G......C..C......... AP012090.1_Luxilus_cornutus_mito .......C........T........A...........T..............C..C..T.....G..C..C......... AP012091.1_Lythrurus_ardens_mito .G..............T.....T..T........G..C.....C..C.....T..C..T.G......C..C.....C... AP012092.1_Lythrurus_fumeus_mito ....G........G..C..C.....C.....G..G..C..............T..C..T.G...G..C..C......... AP012093.1_Lythrurus_lirus_mitoc .G..............T..C..T..C........G..C.....C..C.....T..C..T.G......C..C.....C... AP012094.1_Lythrurus_umbratilis_ .G..............T.....T..T........G..C.....C..C.....T..C..T.G......C..C.....C... AP012095.1_Macrhybopsis_meeki_mi .............C..C.....T..A...........T........C........C..T.G......C..T.....C..C AP012097.1_Notropis_bifrenatus_m ....G...........C.....T..C.....G..G..T........C..C..T..C..T.G......C..T......... AP012098.1_Pimephales_sp._MCZunc .......C.....G..T.....T..A..G..G..G..T..............T..C..T.G......C..T.....C... AP012100.1_Notropis_telescopus_m .G.....T........T......T.A........G..T........C.....C.......G...G..C..C.....C..C AP012101.1_Pimephales_notatus_mi .......C........T.....T..A..G..G..G..T..G...........T..C..T.G......C..T.....C... AP012102.1_Pimephales_vigilax_mi .......T..T.....T................................CT.C..C..T.G......C..C.....C... AP012103.1_Pogonichthys_macrolep .....T..........T.....TT.A..G........T..G...........C.....T........C..C.....C... AP012106.1_Richardsonius_balteat .....T....T.....C........A...........T..............C.....T........C..C.....C..C AP012108.1_Notropis_chrosomus_mi .G........T..G..T........A.....G.....C..G..C........T..C..T.G......C..T......... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .......T..T.....T................................CT.C..C..T.G......C..C.....C... Pimephales_vigilax_R1S3_________ .......T..T.....T................................CT.C..C..T.G......C..C.....C... DQ536429.1_Notropis_stramineus_m .......C........T........C.....G..G..T..G.....C........C..T.G...G..C..C..G..C... JX910141.1_Squaliobarbus_curricu .............G.....C...T.A...........C..............C.....T.................C..C KC351187.1_Squaliobarbus_curricu .............G.....C...T.A...........C..............C.....T.................C..C KT278765.1_Pimephales_promelas_m ..........T.....G..C.....A..G..G.....T...........C..T..C..T.G......C..C.....C..C KT289925.1_Pimephales_promelas_m ..........T........C.....A..G..G.....T...........C..C..C..T.G......C..T.....C..C KT424924.1_Rhinichthys_osculus_m .....T..........T.....TT.............T..............T.....T.....G..C..C.....C..C KU200257.1_Chanodichthys_ilishae ....G....................A...........................T.............G............ MF972070.1_Siphateles_bicolor_mo ..........A..C..C..C.....A.....G..G..C..............C.....T........C..C.....C... MG570407.1_Notropis_chalybaeus_v .......G..T.....T.....T..A..G........C........C.....C..C....G......C..C......... MG570408.1_Notropis_bifrenatus_v ....G...........C.....T..C.....G..G..T........C..C..T..C..T.G......C..T......... MG570413.1_Notropis_heterolepis_ ................T........A...........T.....C..C.....T..C..T.G......C..C.....C..C MG570416.1_Rhinichthys_obtusus_v .....T.G.....C..C..C.....A..G..G..G..T...........G..T..C..T.....G..C..C......... MG570417.1_Rhinichthys_obtusus_v .....T.G.....C..C..C.....A..G..G..G..T...........G..T..C..T.....G..C..C......... MG570420.1_Pimephales_notatus_vo .......C.....G..T.....T..A..G..G..G..T..............T..C..T.G......C..T.....C... MG570443.1_Notropis_hudsonius_is .....T....T..T..C......T.A...........T.....C..C.....C..C..T........C..T.....C..C MG570444.1_Rhinichthys_atratulus .....T..........C........A..G..G..G..T..............T..C..T.....G..C..C.....C..C MG570445.1_Rhinichthys_atratulus .....T..........C........A.....G..G..T..............T..C..T.....G..C..C.....C..C MG570447.1_Luxilus_cornutus_isol .......C........T.....T..A...........T...........G..C..C..T.G...G..C..C......... MG570449.1_Luxilus_cornutus_isol .......C........T.....T..A...........T...........G..C..C..T.G...G..C..C......... MG570450.1_Pimephales_notatus_is .......C.....G..T.....T..A..G..G..G..T..............T..C..T.G......C..T.....C... MG570451.1_Notropis_bifrenatus_i ....G...........C.....T..T.....G..G..T........C..C..T..C..T.G......C..T......... MG570453.1_Exoglossum_maxillingu .......G.....G..C........A.....G.....T..............C...C.T.....G..C..C.....C... MG570454.1_Pimephales_promelas_i ..........T........C.....A..G..G.....T...........C..C..C..T.G......C..T.....C..C MG570455.1_Notropis_atherinoides .......G..A..C..T.....T..T...........T..G.....C.....T..C..T.G......C..C......... MG570456.1_Notropis_atherinoides .......G..A..C..T........T...........T..G.....C.....T..C..T.G...G..C..C......... MG570457.1_Pimephales_notatus_is .......C.....G..T.....T..A..G..G..G..T..............T..C..T.G......C..T.....C... MG570458.1_Pimephales_notatus_is .......C.....G..T.....T..A..G..G..G..T..............T..C..T.G......C..T.....C... MK421554.1_Parabramis_pekinensis .............G...........A....................C.....C.....T........G............ MT333789.1_Notropis_lutipinnis_v .....T....T..C..T........A...........C..G..C........T..C..TGG......C..T......... MT364325.1_Hybognathus_amarus_mi .......C..T.....T........A...........T.....C..C.....C..C..T.G...G..C..C......... MT501368.1_Gila_cypha_isolate_SN .....T....A..T..C........A........G..C..............C.....T..T.....C..C.....C... MT501369.1_Notropis_simus_pecose ................T........A..G..T.....C.....C..C.....T..C..T.G......C..C......... MT501378.1_Hybognathus_amarus_is .......C..T..G..T........A...........T.....C..C.....C..C..T.G...G..C..C......... MT501385.1_Notropis_jemezanus_vo .G........T..C..T.....T..T...........T..G.....C.....T..C..T.G......C..C.....C... MT501391.1_Rhinichthys_osculus_i ....GT..........C.....T.....G........T..............T..G..T........C..C.....C... MT667239.1_Rhinichthys_osculus_t ....G...........C.....T.....G........T..............T..G..T........C..C.....C... MT667242.1_Luxilus_cornutus_vouc .......C........T.....T..A...........T...........G..C..C..T.G...G..C..C......... MW300340.1_Hybognathus_placitus_ .......C........T........A..G..G.....T..G..C..C.....T..C..T.G...G..C..C.....C... MW300341.1_Hybognathus_placitus_ .......C........T........A..G..G.....T..G..C..C.....T..C..T.G...G..C..C.....C... NC_013763.1_Mylocheilus_caurinus .....T.......G..T.....TT.A..G..G.....T..............C.....T........C..C.....C..C NC_033926.1_Opsopoeodus_emiliae_ .......T.....C..T........A.....G.......C..........G.C..C..T........C..T......... NC_037008.1_Notropis_chalybaeus_ .......G..T.....T.....T..A..G........C........C.....C..C....G......C..C......... NC_037009.1_Notropis_heterolepis ................T........A...........T.....C..C.....T..C..T.G......C..C.....C..C NC_037010.1_Rhinichthys_obtusus_ .....T.G.....C..C..C.....A..G..G..G..T...........G..T..C..T.....G..C..C......... NC_037014.1_Notropis_hudsonius_i .....T....T..T..C......T.A...........T.....C..C.....C..C..T........C..T.....C..C NC_037015.1_Exoglossum_maxilling .......G.....G..C........A.....G.....T..............C...C.T.....G..C..C.....C... NC_054086.1_Ptychocheilus_lucius .....T....A..C..C........A.....G.....C..............CT....T........C..C.....C..C NC_054257.1_Gila_cypha_isolate_S .....T....A..T..C........A........G..C..............C.....T..T.....C..C.....C... NC_054259.1_Gila_nigrescens_isol ..........A..C..C........A........G..C...........G..C.....T........C..C.....C... NC_054260.1_Hybognathus_amarus_i .......C.....G..T........A...........T.....C..C.....C..C..T.G...G..C..C......... NC_054262.1_Notropis_jemezanus_v .G........T..C..T.....T..T...........T..G....CC.....T..C..T.G......C..C.....C... Pimephales_notatus_R2S3_________ .......C........T.....T..A...........T..............T.....T.G......C..C..G..C... Pimephales_tenellus_tenellu_R2S1 .......C.....G..C........A.....G.....T.....C..C..G..G..C..T.G......C..C.....C... Pimephales_tenellus_parvice_R2S2 .......T.....G..C..C.....A.....G.....T.....C..C..G..G..C..T........C..T.....C... Pimephales_notatus_R1S1_________ .......C........T.....T..A...........T..............T.....T.G......C..C..G..C... MG570452.1_Pimephales_promelas_i ..........T........C.....A..G..G.....T...........C..C..C..T.G......C..T.....C..C MG570452.1_Pimephales_promelas_S ..........T........C.....A..G..G.....T...........C..C..C..T.G......C..T.....C..C AB626850.1_Megalobrama_terminali GCGCTCACAGGAGCAGGAACGTTAATTACAGCAGGCTACTCCCTATATATATTCCTAATATCTCAACGAGGCCCGACACC AP010779.1_Mylocheilus_caurinus_ ............CTG..G..A.....C..C....C......T..T..CT.G...T....G.....G..C.....A..... AP011215.1_Gila_sp._1460_mitocho ..A.....G...CT...G..A........C...A..........T.....G...T.............C......G.... AP011263.1_Scardinius_erythropht ..A..T..G..GCT...............C..C........T..T.........T....G........C......G.... AP011267.1_Algansea_lacustris_mi ..A.....C..GTT...G..A........T....CT........C.....G...T.G.....C..G..C.....A..... AP011268.1_Yuriria_alta_mitochon ..A..T..C...CT...G..A........T....C.........T.....G...T.G..G........C.....A..C.. AP011273.1_Hybognathus_nuchalis_ ..A.....T...CT......AC.......T..G.C...T.....T...T.....T.......C..G..T.....A..... AP011274.1_Couesius_plumbeus_mit ..A..T..G...CT.......C.G.....C..G.....T..A..T..C..............C..G..T.....A..... AP011275.1_Platygobio_gracilis_m ..A.....C..TCT......A........C..G.C.........T.....G...T....G.....G..C.....A..... AP011277.1_Erimystax_dissimilis_ ..A.....C...TT...G..A.....C..C..............T.....G...T..........G..C..G.....C.. AP011279.1_Pimephales_promelas_m ..A..T..T...CT......A..G.....C....C.........T..CT.....T....G........T.....A..... AP011280.1_Clinostomus_elongatus ..A..T..T...CT......A........C..G........T..T..C..G...........C.....C..T..A..... AP012079.1_Luxilus_chrysocephalu ..A.....C...CTG.....A..G.....T....C...T.....T.....G...T....G........T.....A..... AP012080.1_Macrhybopsis_gelida_m ..A.....T...TT...G..AC.......T....C.........C.........T.......C.....T........... AP012083.1_Notropis_atherinoides ..A.....T..GCTC.....A........T..G.C.........C.....G...T.G...........T........... AP012084.1_Notropis_baileyi_mito ..A..T..T...CT...T..A..G.....C....C.........C..C......T.......C.....T........... AP012087.1_Cyprinella_galactura_ ..A..T..C...CT...G..A........C....C.........C.....G...T..........G..T..A..A..... AP012088.1_Hybopsis_lineapunctat ..A.....T..CCT...G..AC.......C....C.........T..C..G...T.......C.....T.....A..... AP012090.1_Luxilus_cornutus_mito ..A.....C...TT...G..A..G.....T..G.C.........T.....G...T..........G..T.....A..... AP012091.1_Lythrurus_ardens_mito ..A..T..C...CT...T..AC.G.....C....C...T.....T..C..G...T.G..G.....G..T..A........ AP012092.1_Lythrurus_fumeus_mito ..A..T..C...TT...T..AC.C.....C....C......T..C..C..G...T.......C.....T........... AP012093.1_Lythrurus_lirus_mitoc ..A..T..C...CT...T...C.......C....C...T.....T..C..G...T.............T..G........ AP012094.1_Lythrurus_umbratilis_ ..A..T..C...CT...T..AC.G.....C....C...T.....T..C..G...T.G..G.....G..T..A........ AP012095.1_Macrhybopsis_meeki_mi ..A.....C..GTT...G..A.....C..T....C.........T.........T.......C.....C.....A..... AP012097.1_Notropis_bifrenatus_m ..A..T..C...TT...G..A........T..C.C...............G.....C...........T.....A..... AP012098.1_Pimephales_sp._MCZunc ..A..T..T...TT......A........T....C.........C...C.....T.............T..T..A..... AP012100.1_Notropis_telescopus_m ..A..T..T..GTT...G..A........T....C.........C..C......T.............T.....A..... AP012101.1_Pimephales_notatus_mi ..A..T..T..GTT......A........T....C.........C...C.....T..G..........T.....A..... AP012102.1_Pimephales_vigilax_mi A.A..T..T...ATT.....A........T....C.........C..CT.....T.............T.....A..... AP012103.1_Pogonichthys_macrolep ..A.....G...CT......A.....C..C....CT.....T..C..CT.....T.............C.....A..... AP012106.1_Richardsonius_balteat ..A.....T...CT......A.....C..C..GA.......T..T..C..G.....G...........C.....A..... AP012108.1_Notropis_chrosomus_mi ..A..T..T...TT...C..A........G..G.C.........C.........T..........G..T.....A..G.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ A.A..T..T...ATT.....A........T....C.........C..CT.....T.............T.....A..... Pimephales_vigilax_R1S3_________ A.A..T..T...ATT.....A........T....C.........C..CT.....T.............T.....A..... DQ536429.1_Notropis_stramineus_m .....T..T..GCTC..G..A........T....C......T..C...T.G...T.............T.....T..... JX910141.1_Squaliobarbus_curricu ..A.....T..G........AC................T.....G..C..G...T.......C..G........A..... KC351187.1_Squaliobarbus_curricu ..A.....T..G........AC................T.....G..C..G...T.......C..G........A..... KT278765.1_Pimephales_promelas_m ..A..T..T...CT......AC.G.....C....C.........T..CT.....T....G........T.....A..... KT289925.1_Pimephales_promelas_m ..A..T..T...CT......A..G.....C....C.........T..CT.....T....G........T........... KT424924.1_Rhinichthys_osculus_m ..A..A..C..GCT......A........C..G.C.........C.....G...T.......A.....C..A..AG.... KU200257.1_Chanodichthys_ilishae ..A.....G..T........AC..........G.........T.............T..G........G.....A..... MF972070.1_Siphateles_bicolor_mo ..T.........TT...C..AC.......C...A..........T.....G...T....G........C.....AG.... MG570407.1_Notropis_chalybaeus_v ..A.....T...TT...T..A........T....CT........C..C.....T..............T.....A..... MG570408.1_Notropis_bifrenatus_v ..A..T..C...TT...G..A........T..C.C...............G.....C...........T.....A..... MG570413.1_Notropis_heterolepis_ ..A..T..C...CTG.....A........T....CT........T.....G...T.............T.....A..... MG570416.1_Rhinichthys_obtusus_v ..C.....C...CTG..G..A........C....C...T.....T.....G...T.G.....C.....C..A..A..C.. MG570417.1_Rhinichthys_obtusus_v ..C.....C...CTG..G..A........C....C...T.....T.....G...T.G.....C.....C..A..A..C.. MG570420.1_Pimephales_notatus_vo ..A..T..T..GTT......A........T....C.........C...C.....T.............T..T..A..... MG570443.1_Notropis_hudsonius_is ..A.....C...CTG.....AC....C..C....C.........G..C..G...T.G..G.....G..C......G.... MG570444.1_Rhinichthys_atratulus ..C..T..C..CCTG..G..A........C..G.C...T..T..T.....G...T.G..G..C.....C..G..A..C.. MG570445.1_Rhinichthys_atratulus ..C..T..C..CCTG..G..A........C..G.C...T..T..T.....G...T.G..G..C.....C..G..A..C.. MG570447.1_Luxilus_cornutus_isol ..A.....C...TT...G..A..G.....T..G.C.........T.....G...T..........G..C.....A..... MG570449.1_Luxilus_cornutus_isol ..A.....C...TT...G..A..G.....T..G.C.........T.....G...T..........G..C.....A..... MG570450.1_Pimephales_notatus_is ..A..T..T..GTT......A........T....C.........C...C.....T.............T..T..A..... MG570451.1_Notropis_bifrenatus_i ..A..T..C...TT...G..A........T..C.C...............G.....C...........T.....A..... MG570453.1_Exoglossum_maxillingu ..A.....C...TT...G..A.....C..C..............T.....G...T..........G..C..G.....C.. MG570454.1_Pimephales_promelas_i ..A..T..T...CT......A..G.....C....C.........T..CT.....T....G........T........... MG570455.1_Notropis_atherinoides ..A.....T..GCTC.....A........T....C.........C.....G...T.G...........T........... MG570456.1_Notropis_atherinoides ..A.....T..GCTC.....A........T..G.C.........C.....G...T.G...........T........... MG570457.1_Pimephales_notatus_is ..A..T..T..GTT......A........T....C.........C...C.....T.............T..T..A..... MG570458.1_Pimephales_notatus_is ..A..T..T..GTT......A........T....C.........C...C.....T.............T..T..A..... MK421554.1_Parabramis_pekinensis ..A.................A.....C............................................T..A..... MT333789.1_Notropis_lutipinnis_v ..A..T..C..GTT...T..A.....C..T..G.C.........C.....G...T.............T.....A..... MT364325.1_Hybognathus_amarus_mi ..A..T..T...CT......AC.......T....C...T.....C...T.G...T..........G..T.....A..... MT501368.1_Gila_cypha_isolate_SN ..A.........CT......A........C...A..........C.....G...T.............C.....A..... MT501369.1_Notropis_simus_pecose ..A..T..C...CT...T..A........T....C.........C..C..G.....G...........T........G.. MT501378.1_Hybognathus_amarus_is ..A..T..T...TT......AC.......T....C...T.....C...T.G...T..........G..T.....A..... MT501385.1_Notropis_jemezanus_vo ..A.....T..GCTC.....A..G.....C..G.C.........C.....G...T.G..G........T......G.G.. MT501391.1_Rhinichthys_osculus_i ..A.....C..GTTG.....A........C..G.C.........C.....G...T.G.....C.....C..G...G.... MT667239.1_Rhinichthys_osculus_t ..A.....C..GTTG.....A........C..G.C.........C.....G...T.G.....C.....C..G...G.... MT667242.1_Luxilus_cornutus_vouc ..A.....C...TT...G..A..G.....T..GAC.........T.....G...T..........G..C.....A..... MW300340.1_Hybognathus_placitus_ .....T..T..GCT......A..G.....T....C.........C..CT.....T..........G..T.....A..... MW300341.1_Hybognathus_placitus_ .....T..T..GCTG.....A..G.....T....C.........T..CT.G...T..........G..T.....A..... NC_013763.1_Mylocheilus_caurinus ............CTG..G..A.....C..C....C......T..T..CT.G...T....G.....G..C.....A..... NC_033926.1_Opsopoeodus_emiliae_ .....T..C...CT......A........T..C.C.........C...T.....T..C..........T.....A...A. NC_037008.1_Notropis_chalybaeus_ ..A.....T...TT...T..A........T....CT........C..C.....T..............T.....A..... NC_037009.1_Notropis_heterolepis ..A..T..C...CTG.....A........T....CT........T.....G...T.............T.....A..... NC_037010.1_Rhinichthys_obtusus_ ..C.....C...CTG..G..A........C....C...T.....T.....G...T.G.....C.....C..A..A..C.. NC_037014.1_Notropis_hudsonius_i ..A.....C...CTG.....AC....C..C....C.........G..C..G...T.G..G.....G..C......G.... NC_037015.1_Exoglossum_maxilling ..A.....C...TT...G..A.....C..C..............T.....G...T..........G..C..G.....C.. NC_054086.1_Ptychocheilus_lucius ..A.........CT......A........C...A....T.....T..C..G...T.............C.....CG.... NC_054257.1_Gila_cypha_isolate_S ..A.........CT......A........C...A..........C.....G...T.............C.....A..... NC_054259.1_Gila_nigrescens_isol ..A.........CT...G..A........C..............T.....G...T....G........C......G.G.. NC_054260.1_Hybognathus_amarus_i ..A..T..T...CT......AC.......T....C...T.....C...T.G...T..........G..T.....A..... NC_054262.1_Notropis_jemezanus_v ..A.....T..GCTC.....A..G.....C..G.C.........C.....G...T.G..G........T......G.G.. Pimephales_notatus_R2S3_________ ..A..T..C...CT......A........T....C...T.....C...C.....T.............T..T..A..... Pimephales_tenellus_tenellu_R2S1 ..A.....T...CT......AC....C..T....C.........C...T.G...T.G.....C.....T.....A..... Pimephales_tenellus_parvice_R2S2 ..A.....T...CT......AC....C..T....C.........C...T.G...T.....A.C.....T.....A..... Pimephales_notatus_R1S1_________ ..A..T..C...CT......A........T....C...T.....C...C.....T.............T..T..A..... MG570452.1_Pimephales_promelas_i ..A..T..T...CT......A..G.....C....C.........T..CT.....T....G........T........... MG570452.1_Pimephales_promelas_S ..A..T..T...CT......A..G.....C....C.........T..CT.....T....G........T.....A..... AB626850.1_Megalobrama_terminali GAGCCACATCACCAAACTCCCGCCATTCCACACCCGAGAACACCTATTAATAGCCCTTCACCTGATTCCAGTAATCCTCC AP010779.1_Mylocheilus_caurinus_ A.A...T..T.TA........A.....T..T..............G........T..C..T..T...........T..T. AP011215.1_Gila_sp._1460_mitocho A.....T....TA..G..G..C..C.......................G..............T...........T.... AP011263.1_Scardinius_erythropht .........T.TG.....TG.A..G.................TT.GC.............T..T...........T.... AP011267.1_Algansea_lacustris_mi ACA...T..TGTG........A.....T..................C.G..G.....CT....C.C..G..CG..T..AG AP011268.1_Yuriria_alta_mitochon ACAT.......TA.....TT.A.....T..............T...C....G...........T.C.........T.... AP011273.1_Hybognathus_nuchalis_ ACA......T.TG......T.A........................C................C...........T.... AP011274.1_Couesius_plumbeus_mit A.A...TG.T.TA.............................T..C..............T..T...........T..G. AP011275.1_Platygobio_gracilis_m ACAT......GTA......T.A.....................T..C.G..G...........C.....G...G.T.... AP011277.1_Erimystax_dissimilis_ T.A....G.T.TA.....T..A..............G......T..C..............T.T..G...........T. AP011279.1_Pimephales_promelas_m ACA...TG.T.TA......T.C..G.....T...........TT..C.......T........T..C..G.....T.... AP011280.1_Clinostomus_elongatus A.AT.......TG.....T..A.....T..............T.....G.....T..C..T..C...........T.... AP012079.1_Luxilus_chrysocephalu ACA...T..TGTG.....TT.A....................T...C.G.....T........C.....G.....T.... AP012080.1_Macrhybopsis_gelida_m ACAT..T...GTA........A..............G......T..C................C.........G.AT... AP012083.1_Notropis_atherinoides ACAT.......TG..C...A.A....................T..GC....G..T........T...........T.... AP012084.1_Notropis_baileyi_mito ACA...T..T.TG......T....C.................T...C....G..T........C..C........T.... AP012087.1_Cyprinella_galactura_ ACAT...G...TG......T.A....................T........G..T........C........G..T.... AP012088.1_Hybopsis_lineapunctat ACA........TA......T.A........................C....G........T..T.....C..G....... AP012090.1_Luxilus_cornutus_mito ACAT..T..TGTG..G..TT.A....................T..GC.G.....T..C.....T.....C..G..T.... AP012091.1_Lythrurus_ardens_mito ATA......TGTG......T.A..T........A..G.....T...C....G..T........T.....G.....T.... AP012092.1_Lythrurus_fumeus_mito ACA.......GTG........A..C.....T...........T..GC.G..G..T........C..C..G.....T.... AP012093.1_Lythrurus_lirus_mitoc ACA......TGTA.....TT.A..C.................TT..C....G..T........T.....G.....T.... AP012094.1_Lythrurus_umbratilis_ ACA......TGTG......T.A..T........A..G.....T...C....G..T........T.....G.....T.... AP012095.1_Macrhybopsis_meeki_mi ACAT.......TG.....TT.A..............G......T..C.............TT.T.........G.AT... AP012097.1_Notropis_bifrenatus_m ACAT.......TA......T.A.....T..............T...C....G..T........T........G..T..A. AP012098.1_Pimephales_sp._MCZunc ACAT...G...TG.....TG.A.....T..................C.......T.....T..TG..........T..T. AP012100.1_Notropis_telescopus_m ACAT......GTG......T.A....................T...C................T..C........T.... AP012101.1_Pimephales_notatus_mi ACAT...G...TG.....TG.A.....T..................C.......T.....T..TG..........T..T. AP012102.1_Pimephales_vigilax_mi TCAT..T..T.TA...T.ATT.....................T.........A.T.....T..TG..........T.... AP012103.1_Pogonichthys_macrolep A.A...TG...TG........A.....T..T..T...........G......A....C..T..T...........T..T. AP012106.1_Richardsonius_balteat A.A....G.T.TA.....T..A.....T.................G..G...A....C..T..T...........T..T. AP012108.1_Notropis_chrosomus_mi ACAT.......TA......T.A.................G..T..CC....GT.T........C..C..G...G.T.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ TCAT..T..T.TA...T.ATT.....................T.........A.T.....T..TG..........T.... Pimephales_vigilax_R1S3_________ TCAT..T..T.TA...T.ATT.....................T.........A.T.....T..TG..........T.... DQ536429.1_Notropis_stramineus_m ACA.......GTG..G...T.A.................G..T...C....G...........C.....G.....T.... JX910141.1_Squaliobarbus_curricu A.AT.....T..T........A....................T...........T........A...........T.... KC351187.1_Squaliobarbus_curricu A.AT.....T..T........A....................T...........T........A...........T.... KT278765.1_Pimephales_promelas_m ACA...TG.T.TA......T.C........T...........TT..C.......T..C.....T..C..G.....T.... KT289925.1_Pimephales_promelas_m ACA...TG.T.TA......T.C........T...........TT..C.......T........T..C..G.....T.... KT424924.1_Rhinichthys_osculus_m A.A...T....TA..C...G.A.....T..............T...C....GA..........C.....G..G..T.... KU200257.1_Chanodichthys_ilishae A.A...T.....T........A.....T..................C................A..C........T.... MF972070.1_Siphateles_bicolor_mo A.....T....TA.....G..C..C.......................G..............T...........T.... MG570407.1_Notropis_chalybaeus_v ACAT.....T.TG......T.A.......................G.................C.........C.T.... MG570408.1_Notropis_bifrenatus_v ACAT.......TA......T.A.....T..............T...C....G..T........T........G..T..A. MG570413.1_Notropis_heterolepis_ ACAT.......TG......T.A.................G..T...C.G.....T........T...........T.... MG570416.1_Rhinichthys_obtusus_v A.....T..A.TA.......TA....................T...C................T.C.......G.T.... MG570417.1_Rhinichthys_obtusus_v A.....T..A.TA.......TA....................T...C................T.C.......G.T.... MG570420.1_Pimephales_notatus_vo ACAT...G...TG.....TG.A.....T..................C.......T.....T..TG..........T..T. MG570443.1_Notropis_hudsonius_is ACA.......GTG.....TT.A....................T..GC................T.....G.......... MG570444.1_Rhinichthys_atratulus A.A...T..A.TA.......TA....................T..GC................T........GG.T.... MG570445.1_Rhinichthys_atratulus A.A...T..A.TA.......TA.....T..............T..CC................T........GG.T.... MG570447.1_Luxilus_cornutus_isol ACAT..T..TGTG..G..TT.A.................G.....GC.G..G..T..C.....T.....C..G..T.... MG570449.1_Luxilus_cornutus_isol ACAT..T..TGTG..G..TT.A.................G.....GC.G..G..T..C.....T.....C..G..T.... MG570450.1_Pimephales_notatus_is ACAT...G...TG.....TG.A.....T..................C.......T.....T..TG..........T..T. MG570451.1_Notropis_bifrenatus_i ACAT.......TA......T.A.....T..............T...C....G..T........T........G..T..A. MG570453.1_Exoglossum_maxillingu T.A....G.T.TA.....T..A..............G......T..C..............T.T..G...........T. MG570454.1_Pimephales_promelas_i ACA...TG.T.TA......T.C........T...........TT..C.......T........T..C..G.....T.... MG570455.1_Notropis_atherinoides ACAT.......TG..C...G.A....................T..GC....G..T........T...........T.... MG570456.1_Notropis_atherinoides ACAT.......TG..C...G.A....................T..GC....G..T........T...........T.... MG570457.1_Pimephales_notatus_is ACAT...G...TG.....TG.A.....T..................C.......T.....T..TG..........T..T. MG570458.1_Pimephales_notatus_is ACAT...G...TG.....TG.A.....T..................C.......T.....T..TG..........T..T. MK421554.1_Parabramis_pekinensis A..........................T..........................T........A................ MT333789.1_Notropis_lutipinnis_v CCA........TG......T.A........T.....G.....T..CC.....A..........T.....G..G..T.... MT364325.1_Hybognathus_amarus_mi ACA......T.TG......T.A........T...............C................T.....G.....T.... MT501368.1_Gila_cypha_isolate_SN A.....TG.T.TG..G..G..C..C................................C.....T...........T.... MT501369.1_Notropis_simus_pecose ACAT......GTA......T.A........T.....G.....T...C.C..G...........T..C..C...G.T.... MT501378.1_Hybognathus_amarus_is ACA......T.TG......T.A.....T..T...............C................T.....G.....T.... MT501385.1_Notropis_jemezanus_vo .CA.......GTG..C...GTA.....T..............T...C.G..G..G........T...........T.... MT501391.1_Rhinichthys_osculus_i A.AT..T....TA..C...G.A.................G......C.G..............T........TC.T.... MT667239.1_Rhinichthys_osculus_t A.AT..T....TA..C...G.A.................G......C.G..............T........TC.T.... MT667242.1_Luxilus_cornutus_vouc ACAT..T..TGTG..G..TT.A.................G.....GC.G..G..T..C.....T.....C..G..T.... MW300340.1_Hybognathus_placitus_ ACAT.....TGTG.....TG.A.........................................C...........T.... MW300341.1_Hybognathus_placitus_ ACAT.....TGTG.....TG.A.........................................C...........T.... NC_013763.1_Mylocheilus_caurinus A.A...T..T.TA........A.....T..T..............G........T..C..T..T...........T..T. NC_033926.1_Opsopoeodus_emiliae_ CCC....G.TTTA......T.C.....T.................CC.C...T.T........T...........T..A. NC_037008.1_Notropis_chalybaeus_ ACAT.....T.TG......T.A.......................G.................C.........C.T.... NC_037009.1_Notropis_heterolepis ACAT.......TG......T.A.................G..T...C.G.....T........T...........T.... NC_037010.1_Rhinichthys_obtusus_ A.....T..A.TA.......TA....................T...C................T.C.......G.T.... NC_037014.1_Notropis_hudsonius_i ACA.......GTG.....TT.A....................T..GC................T.....G.......... NC_037015.1_Exoglossum_maxilling T.A....G.T.TA.....T..A..............G......T..C..............T.T..G...........T. NC_054086.1_Ptychocheilus_lucius A.....T....TAGC...A..C..C......................................T...........T.... NC_054257.1_Gila_cypha_isolate_S A.....TG.T.TG..G..G..C..C................................C.....T...........T.... NC_054259.1_Gila_nigrescens_isol A.....T....TA..G..A..C..C..............G........G..............T.........G.T.... NC_054260.1_Hybognathus_amarus_i ACA......T.TG......T.A........T...............C................T.....G.....T.... NC_054262.1_Notropis_jemezanus_v ACA.......GTG..C...GTA.....T..............T...C.G..G..G........T...........T.... Pimephales_notatus_R2S3_________ ACAT..T....TA.....TG.A.....T..............T...C.......T.....T..TG..........T..T. Pimephales_tenellus_tenellu_R2S1 ACA...TG..GTA........C.....T..T.....G.........C.....A.T........T..C..G.....T..T. Pimephales_tenellus_parvice_R2S2 ACAT..TG..GTA........C.....T..T.....G.........C....GA.T........T..C..G.....T..T. Pimephales_notatus_R1S1_________ ACAT..T....TA.....TG.A.....T..............T...C.......T.....T..TG..........T..T. MG570452.1_Pimephales_promelas_i ACA...TG.T.TA......T.C........T...........TT..C.......T........T..C..G.....T.... MG570452.1_Pimephales_promelas_S ACA...TG.T.TA......T.C..G.....T...........TT..C.......T........T..C..G.....T.... AB626850.1_Megalobrama_terminali TTGTTACAAAGCCAGAACTTATATGAGGCTGATGCTACTAGTAAGTATAGTTTAACCAAAATATTAGATTGTGATTCTAA AP010779.1_Mylocheilus_caurinus_ ....A....C............G...........T........................G....C.............G. AP011215.1_Gila_sp._1460_mitocho ....GG.............C............................................................ AP011263.1_Scardinius_erythropht ....AG.C..A........C........A..G..T............................................. AP011267.1_Algansea_lacustris_mi .CA.A.....A.................G.....T....................T........C.............G. AP011268.1_Yuriria_alta_mitochon .C..A.....A........G..G...........T..........................C..C.............G. AP011273.1_Hybognathus_nuchalis_ .C..G........G........G.....A..........-...............T.....C..C.............G. AP011274.1_Couesius_plumbeus_mit ....A.....A.....G..CT.......A..G.....T.......................C................G. AP011275.1_Platygobio_gracilis_m ....A........C........G........G..T....................TT.......C.............G. AP011277.1_Erimystax_dissimilis_ ....A.....A..G........G.....A.....T...................G....G....C.............G. AP011279.1_Pimephales_promelas_m ....A.....A........A..G.....G.....T.....................T....C..C.............G. AP011280.1_Clinostomus_elongatus ....A...........G.....G...........T.....................T.....................G. AP012079.1_Luxilus_chrysocephalu .C..AG....A.................G.....T........................G.C..C.............G. AP012080.1_Macrhybopsis_gelida_m ..A.AG....A..G........G.....G.....T..T.-.........A......T.....G.C.............GG AP012083.1_Notropis_atherinoides .C..G.................G......................................C..C.............G. AP012084.1_Notropis_baileyi_mito .C..G.....A.................G.....T.............................C.............G. AP012087.1_Cyprinella_galactura_ .A..AG....A.....G.....G.....G.....T....................GA....C..C.............G. AP012088.1_Hybopsis_lineapunctat .C..G.......................G.....T..........................C..C.............G. AP012090.1_Luxilus_cornutus_mito .C..AG.G........G...........A.....T.......G................G.C..C.............G. AP012091.1_Lythrurus_ardens_mito .C..A.....A...........G.....G..............................G.C..C.............G. AP012092.1_Lythrurus_fumeus_mito .C..A.....A...........G.....A..G..T....................T...G....C.............G. AP012093.1_Lythrurus_lirus_mitoc .C..AG....A......G..........A..G.......................T...G.C..C.............G. AP012094.1_Lythrurus_umbratilis_ .C..A.....A...........G.....G..........................T...G.C..C.............G. AP012095.1_Macrhybopsis_meeki_mi ..A.AGT......G..G...........G.....T..T...........A......T.......C.............GG AP012097.1_Notropis_bifrenatus_m .CA.G.....A...........G.....G................................C................G. AP012098.1_Pimephales_sp._MCZunc ....A.....A.....G..A........G.....T.....................T....C..C.............G. AP012100.1_Notropis_telescopus_m ....A..............C..G..G........T..........................C..C.............G. AP012101.1_Pimephales_notatus_mi ....A.....A.....G..A........G.....T.....................T....C..C.............G. AP012102.1_Pimephales_vigilax_mi ....AG....A........A........G.....T....................TT....CG.C....C........G. AP012103.1_Pogonichthys_macrolep ....A....C......G..............G..T.......G............T...G....C.............G. AP012106.1_Richardsonius_balteat .C..AG................G........G..T........G..........G.T....C..C.............G. AP012108.1_Notropis_chrosomus_mi .C..A.....A..G..............A.....T...........................C.C.............G. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....AG....A........A........G.....T....................TT....CG.C....C........G. Pimephales_vigilax_R1S3_________ ....AG....A........A........G.....T....................TT....CG.C....C........G. DQ536429.1_Notropis_stramineus_m ....G..............A..G........G..T..........................C..C.............G. JX910141.1_Squaliobarbus_curricu ....GG.............G..G...........T.....................T....................... KC351187.1_Squaliobarbus_curricu ....GG.............G..G...........T.....................T....................... KT278765.1_Pimephales_promelas_m ....A.....A........A..G.....G.....T.....................T....C..C.............G. KT289925.1_Pimephales_promelas_m ....A.....A........A..G.....G.....T.....................T....C..C.............G. KT424924.1_Rhinichthys_osculus_m ....AG.......G...G..........A.....T....-...............T...G.C..C.............G. KU200257.1_Chanodichthys_ilishae ....AG.......................................................C.................. MF972070.1_Siphateles_bicolor_mo ....A..............C..G................................T........................ MG570407.1_Notropis_chalybaeus_v .C..A.....A..G........G.....G.....T.............................C.............G. MG570408.1_Notropis_bifrenatus_v .C..G.T...A...........G.....G................................C................G. MG570413.1_Notropis_heterolepis_ .C..A.T...A..G..G...........G.....T....................T.....C..C.............G. MG570416.1_Rhinichthys_obtusus_v ....AG......................G..G..T....................T........C.............G. MG570417.1_Rhinichthys_obtusus_v ....AG......................G..G..T....................T........C.............G. MG570420.1_Pimephales_notatus_vo ....A.....A.....G..A........G.....T.....................T....C..C.............G. MG570443.1_Notropis_hudsonius_is .CA.A.....A..G..G.....G...........T.....................T.......C.............G. MG570444.1_Rhinichthys_atratulus ....AG................G.....G..G..T.............................C.............G. MG570445.1_Rhinichthys_atratulus ....AG................G.....G..G..T.............................C.............G. MG570447.1_Luxilus_cornutus_isol .C..AG.G....................G.....T........................G.C..C.............G. MG570449.1_Luxilus_cornutus_isol .C..AG.G....................G.....T........................G.C..C.............G. MG570450.1_Pimephales_notatus_is ....A.....A.....G..A........G.....T.....................T....C..C.............G. MG570451.1_Notropis_bifrenatus_i .C..G.....A...........G.....G................................C................G. MG570453.1_Exoglossum_maxillingu ....A.....A..G........G.....A.....T...................G....G....C.............G. MG570454.1_Pimephales_promelas_i ....A.....A........G..G.....G.....T.....................T....C..C.............G. MG570455.1_Notropis_atherinoides .C..G.................G......................................C..C.............G. MG570456.1_Notropis_atherinoides .C..A.................G......................................C..C.............G. MG570457.1_Pimephales_notatus_is ....A.....A.....G..A........G.....T.....................T....C..C.............G. MG570458.1_Pimephales_notatus_is ....A.....A.....G..A........G.....T.....................T....C..C.............G. MK421554.1_Parabramis_pekinensis ..........A..................................................C.................. MT333789.1_Notropis_lutipinnis_v ....GG....A..G........G..G..A..G..T.............................C.............G. MT364325.1_Hybognathus_amarus_mi .C..G...G....G........G.....A.....T....-..G............T........C.............G. MT501368.1_Gila_cypha_isolate_SN ....A.T...A........C........T................................................... MT501369.1_Notropis_simus_pecose ....G.....A..G........G.....G..G..T...........................G.C.............G. MT501378.1_Hybognathus_amarus_is .C..G...G....G........G.....A.....T....-..G............T.....C..C.............G. MT501385.1_Notropis_jemezanus_vo .C..G........G........G................................T.....C..C.............G. MT501391.1_Rhinichthys_osculus_i ..A.AGT......T........G.....G..G..T................C.......G....C.............G. MT667239.1_Rhinichthys_osculus_t ..A.AGT......T........G.....G..G..T................C.......G....C.............G. MT667242.1_Luxilus_cornutus_vouc .C..AG.G....................G.....T........................G.C..C.............G. MW300340.1_Hybognathus_placitus_ .C..G........G..G..C..G..G..G.....T....-...............AT....C..C.............G. MW300341.1_Hybognathus_placitus_ .C..G........G..G..C..G..G..A.....T....-...............AT....C..C.............G. NC_013763.1_Mylocheilus_caurinus ....A....C............G...........T........................G....C.............G. NC_033926.1_Opsopoeodus_emiliae_ ....A.TG....................G.....T..T.......................C.................. NC_037008.1_Notropis_chalybaeus_ .C..A.....A..G........G.....G.....T.............................C.............G. NC_037009.1_Notropis_heterolepis .C..A.T...A..G..G...........G.....T....................T.....C..C.............G. NC_037010.1_Rhinichthys_obtusus_ ....AG......................G..G..T....................T........C.............G. NC_037014.1_Notropis_hudsonius_i .CA.A.....A..G..G.....G...........T.....................T.......C.............G. NC_037015.1_Exoglossum_maxilling ....A.....A..G........G.....A.....T...................G....G....C.............G. NC_054086.1_Ptychocheilus_lucius ....AG....A........C............................................................ NC_054257.1_Gila_cypha_isolate_S ....A.T...A........C........T................................................... NC_054259.1_Gila_nigrescens_isol ....G..............C............................................................ NC_054260.1_Hybognathus_amarus_i .C..G...G....G........G.....A.....T....-..G............T.....C..C.............G. NC_054262.1_Notropis_jemezanus_v .C..G........G........G................................T.....C..C.............G. Pimephales_notatus_R2S3_________ ....AG....A.....G..G........G.....T.....................T..G.C..C.............G. Pimephales_tenellus_tenellu_R2S1 ....A..............A........G.....T.....................T....C..C.............G. Pimephales_tenellus_parvice_R2S2 ....A..............A........G.....T.....................T....C..C.............G. Pimephales_notatus_R1S1_________ ....AG....A.....G..G........G.....T.....................T..G.C..C.............G. MG570452.1_Pimephales_promelas_i ....A.....A........G..G.....G.....T.....................T....C..C.............G. MG570452.1_Pimephales_promelas_S ....A.....A........A..G.....G.....T.....................T....C..C.............G. AB626850.1_Megalobrama_terminali AGACAGGAGTTAAAATCCCCTTACTCACCAAGGAAGGACAGAAATCAATAAGTACTGCTAATCCTTATGCACCGCGGTTA AP010779.1_Mylocheilus_caurinus_ .......G......G........................G.......G.....G........A....CAT....A..... AP011215.1_Gila_sp._1460_mitocho ....G..........C..........................C....G..........................A..... AP011263.1_Scardinius_erythropht .........................................CC....G..........................A..... AP011267.1_Algansea_lacustris_mi .A.T...G......CC.....................................G........A.......T...A..... AP011268.1_Yuriria_alta_mitochon .A.T...G....G.GC.....................................G........A.......C...A..... AP011273.1_Hybognathus_nuchalis_ .A.....G......GC......................T..G...........G........A......TC...A..... AP011274.1_Couesius_plumbeus_mit .......G......GC.............G........T............A..........A......T...AA..... AP011275.1_Platygobio_gracilis_m .......G.......C......................T..............G........A......AC...A..... AP011277.1_Erimystax_dissimilis_ .......G..................................G....G..............A...........A..... AP011279.1_Pimephales_promelas_m .A.....G.......C.....................................G........A.......C...A..... AP011280.1_Clinostomus_elongatus .......G......GC...............................G..............A....C.T....G..... AP012079.1_Luxilus_chrysocephalu .......G.......C...............A..............................A......-C...A..... AP012080.1_Macrhybopsis_gelida_m .A.....G.......................................G.....G........A......AC...A..... AP012083.1_Notropis_atherinoides .A.....G.......C...............................G.....G........A.......C...A..... AP012084.1_Notropis_baileyi_mito .......G.......A..........................G..........G........A.......T...A..... AP012087.1_Cyprinella_galactura_ .A.T...G.........................GG.............C....G........A...G...C...A..... AP012088.1_Hybopsis_lineapunctat ...T...G.......C...............................G..............A....C.-C..AA..... AP012090.1_Luxilus_cornutus_mito .......G.......C...............A.....................G........A.......C...G..... AP012091.1_Lythrurus_ardens_mito .......G.......A......................T..G...........G........A.......C...G..... AP012092.1_Lythrurus_fumeus_mito .......G......GC...............A.............................CA......TC...T..... AP012093.1_Lythrurus_lirus_mitoc .......G.......A......................T..G...........G........A.......C...A....G AP012094.1_Lythrurus_umbratilis_ .......G.......A......................T..............G........A.......C...G..... AP012095.1_Macrhybopsis_meeki_mi .A.....G.......C...............................G.....G.......CA......AC...AA.... AP012097.1_Notropis_bifrenatus_m .A.....G.......C.....................................G........A.....A.C...A..... AP012098.1_Pimephales_sp._MCZunc .A.T...G......C......................................G........A.......C...A..... AP012100.1_Notropis_telescopus_m .......G...........T..................T..............G........A.......C...A..... AP012101.1_Pimephales_notatus_mi .A.T...G......C...............................................A.......C..AA..... AP012102.1_Pimephales_vigilax_mi .A.....G......C..........TG.T..................G..............A.....A-C...A..... AP012103.1_Pogonichthys_macrolep .......G......GC...............................G..G..G........A......T....A..... AP012106.1_Richardsonius_balteat .......G...............................T.......G..............A......T...AA..... AP012108.1_Notropis_chrosomus_mi .......G....G..C.....................................G........A.......C...A..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .A.....G......C..........TG.T..................G..............A.....A-C...A..... Pimephales_vigilax_R1S3_________ .A.....G......C..........TG.T..................G..............A.....A-C...A..... DQ536429.1_Notropis_stramineus_m .A.....G.............................................G........A.......C...A..... JX910141.1_Squaliobarbus_curricu ...............C................................................................ KC351187.1_Squaliobarbus_curricu ...............C................................................................ KT278765.1_Pimephales_promelas_m .A.....G.......C.....................................G........A.......C...A..... KT289925.1_Pimephales_promelas_m .A.....G.......C.....................................G........A.......C...A..... KT424924.1_Rhinichthys_osculus_m .......G......GC...............................G..............A...........A..C.. KU200257.1_Chanodichthys_ilishae .A.....G........................................................................ MF972070.1_Siphateles_bicolor_mo ....G.......G..C.............G............C....G..........................A..... MG570407.1_Notropis_chalybaeus_v ...T...G.......C.....................................G........A.......C...A..... MG570408.1_Notropis_bifrenatus_v .A.....G.......C.....................................G........A.....A.C...A..... MG570413.1_Notropis_heterolepis_ .......G.......C.....................................G........A.......C...A..... MG570416.1_Rhinichthys_obtusus_v .......G.......C...............A...............G..............A....C......A..... MG570417.1_Rhinichthys_obtusus_v .......G.......C...............A...............G..............A....C......A..... MG570420.1_Pimephales_notatus_vo .A.T...G......C......................................G........A.......C...A..... MG570443.1_Notropis_hudsonius_is .......G.......................................G.....G........A.......C..AA..... MG570444.1_Rhinichthys_atratulus .......G.......C...............A...............G..............A...........A..... MG570445.1_Rhinichthys_atratulus .......G.......C.......T.......A...............G..............A...........A..... MG570447.1_Luxilus_cornutus_isol .......G.......C...............A.....................G........A.......C...A..... MG570449.1_Luxilus_cornutus_isol .......G.......C...............A.....................G........A.......C...A..... MG570450.1_Pimephales_notatus_is .A.T...G......C......................................G........A.......C...A..... MG570451.1_Notropis_bifrenatus_i .A.....G.......C.....................................G........A.......C...A..... MG570453.1_Exoglossum_maxillingu .......G..................................G....G..............A...........A..... MG570454.1_Pimephales_promelas_i .A.....G.......C.....................................G........A.......C...A..... MG570455.1_Notropis_atherinoides .A.....G.......C...............................G.....G........A.......C...A..... MG570456.1_Notropis_atherinoides .A.....G.......C...............................G.....G........A.......C...A..... MG570457.1_Pimephales_notatus_is .A.T...G......C......................................G........A.......C...A..... MG570458.1_Pimephales_notatus_is .A.T...G......C......................................G........A.......C...A..... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .......G....G..C............................C........G........A.......C...A..... MT364325.1_Hybognathus_amarus_mi .A.....G.......C......................T.CG...........G........A.....ATC...A..... MT501368.1_Gila_cypha_isolate_SN ....G..G.......C.............G............C....G..........................A..... MT501369.1_Notropis_simus_pecose .......G.......C.............G.................G....CG.......CA....C..C...A..... MT501378.1_Hybognathus_amarus_is .A.....G.......C......................T.CG...........G........A.....ATC...A..... MT501385.1_Notropis_jemezanus_vo .......G.......C.....................................G........A.......C...A..... MT501391.1_Rhinichthys_osculus_i .......G.......C...............................G..............A...........A..C.. MT667239.1_Rhinichthys_osculus_t ..C....G.......C...............................G..............A...........A..C.. MT667242.1_Luxilus_cornutus_vouc .......G.......C...............A.....................G........A.......C...A..... MW300340.1_Hybognathus_placitus_ .A.....G......GC......................T..G...........G........A......TC...A..... MW300341.1_Hybognathus_placitus_ .A.....G......GC......................T..G...........G........A......TC...A..... NC_013763.1_Mylocheilus_caurinus .......G......G........................G.......G.....G........A....CAT....A..... NC_033926.1_Opsopoeodus_emiliae_ .A.....G.......C.........A.....A.....G.........G..............A....CA.C...G..... NC_037008.1_Notropis_chalybaeus_ ...T...G.......C.....................................G........A.......C...A..... NC_037009.1_Notropis_heterolepis .......G.......C.....................................G........A.......C...A..... NC_037010.1_Rhinichthys_obtusus_ .......G.......C...............A...............G..............A....C......A..... NC_037014.1_Notropis_hudsonius_i .......G.......................................G.....G........A.......C..AA..... NC_037015.1_Exoglossum_maxilling .......G..................................G....G..............A...........A..... NC_054086.1_Ptychocheilus_lucius ....G..........C..........................C....G....................AT....A..... NC_054257.1_Gila_cypha_isolate_S ....G..G.......C.............G............C....G..........................A..... NC_054259.1_Gila_nigrescens_isol ....G..........C..........................C....G..........................A..... NC_054260.1_Hybognathus_amarus_i .A.....G.......C......................T.CG...........G........A.....ATC...A..... NC_054262.1_Notropis_jemezanus_v .......G.......C.....................................G........A.......C...A..... Pimephales_notatus_R2S3_________ .A.T...G......CC.....................................G........A.......C...A..... Pimephales_tenellus_tenellu_R2S1 .A....AG.......C..T..........G.................G.....G.......CA....C..C..AA..... Pimephales_tenellus_parvice_R2S2 .A....AG.......C..T..........G.................G.....G........A....C.-C..AA..... Pimephales_notatus_R1S1_________ .A.T...G......CC.....................................G........A.......C...A..... MG570452.1_Pimephales_promelas_i .A.....G.......C.....................................G........A.......C...A..... MG570452.1_Pimephales_promelas_S .A.....G.......C.....................................G........A.......C...A..... AB626850.1_Megalobrama_terminali AAATCCGCGGCTTCCTCACGCTTCTGAAGGATAACAGTTCATCCGTTGGTCTTAGGAACCAAAAACTCTTGGTGCAAATC AP010779.1_Mylocheilus_caurinus_ ..G...T.......T.T....................C......A................................... AP011215.1_Gila_sp._1460_mitocho ......T.........T.....C.....................A..................G................ AP011263.1_Scardinius_erythropht ..G...T.........T.A....T....................A................................... AP011267.1_Algansea_lacustris_mi ..C...T.........T....................C.......................................... AP011268.1_Yuriria_alta_mitochon ......T.......T.T....................C.......................................... AP011273.1_Hybognathus_nuchalis_ ......T.......T.T....................C.......................................... AP011274.1_Couesius_plumbeus_mit ......T.........T...........................A.................G................. AP011275.1_Platygobio_gracilis_m ..C...T.......T.T.......C............C.......................................... AP011277.1_Erimystax_dissimilis_ ......T.......T.T.......C............C......A................................... AP011279.1_Pimephales_promelas_m ......T.......T.T....................C.......................................... AP011280.1_Clinostomus_elongatus ......T.......T.T....................C.......................G.................. AP012079.1_Luxilus_chrysocephalu ......T.......T.T....................C.......................................... AP012080.1_Macrhybopsis_gelida_m ......T.......T.T......TC............C.......................................... AP012083.1_Notropis_atherinoides ..G...T.......T.T....................C.......................................... AP012084.1_Notropis_baileyi_mito ......T.......T.T.T..................C.......................G.................. AP012087.1_Cyprinella_galactura_ ..C...T.........T.................T..C......A................................... AP012088.1_Hybopsis_lineapunctat ......TT......T.T....................C.......................................... AP012090.1_Luxilus_cornutus_mito ..G...T.......T.T....................C.......................................... AP012091.1_Lythrurus_ardens_mito ......T.......T.T....................C.......................................G.. AP012092.1_Lythrurus_fumeus_mito ......T.......T.T....................C.......................................... AP012093.1_Lythrurus_lirus_mitoc ......T.......T.TG...................C.......................................... AP012094.1_Lythrurus_umbratilis_ ......T.......T.T....................C.......................................... AP012095.1_Macrhybopsis_meeki_mi ......T.......T.T......TC.........T..C......A................................... AP012097.1_Notropis_bifrenatus_m ......T.......T.T....................C.......................................... AP012098.1_Pimephales_sp._MCZunc ......T.......T.T....................C.......................................... AP012100.1_Notropis_telescopus_m ......T.......T.T....................C.......................................... AP012101.1_Pimephales_notatus_mi ......T.......T.T....................C.........................G................ AP012102.1_Pimephales_vigilax_mi ......T.......T.T....................C.........................G................ AP012103.1_Pogonichthys_macrolep ......T.......T.T.T..................C.......................................... AP012106.1_Richardsonius_balteat ......TT......T.T....................C.........................G................ AP012108.1_Notropis_chrosomus_mi G.....T.......T.T....................C.......................................... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ......T.......T.T....................C.........................G................ Pimephales_vigilax_R1S3_________ ......T.......T.T....................C.........................G................ DQ536429.1_Notropis_stramineus_m ..T...T.......T.T....................C.......................................... JX910141.1_Squaliobarbus_curricu ......................................C.....A................................... KC351187.1_Squaliobarbus_curricu ......................................C.....A................................... KT278765.1_Pimephales_promelas_m ......T.......T.T....................C.......................................... KT289925.1_Pimephales_promelas_m ......T.......T.T....................C.......................................... KT424924.1_Rhinichthys_osculus_m ......T.......T.T....................C.......................................... KU200257.1_Chanodichthys_ilishae ............................................A................................... MF972070.1_Siphateles_bicolor_mo ..C...T.........T.....C.....................A..................G................ MG570407.1_Notropis_chalybaeus_v ......T.......T.T....................C.......................................... MG570408.1_Notropis_bifrenatus_v ......T.......T.T..........G.........C.......................................... MG570413.1_Notropis_heterolepis_ ......T.......T.T....................C.......................................... MG570416.1_Rhinichthys_obtusus_v ......T......TT.TGG.....C............C.......................................... MG570417.1_Rhinichthys_obtusus_v ......T......TT.TGG.....C............C.......................................... MG570420.1_Pimephales_notatus_vo ......T.......T.T....................C.......................................... MG570443.1_Notropis_hudsonius_is ..G...TT......T.T....................C.......................................... MG570444.1_Rhinichthys_atratulus ......T......TT.TGT..................C.......................................... MG570445.1_Rhinichthys_atratulus ......T......TT.TGT..................C.......................................... MG570447.1_Luxilus_cornutus_isol ..G...T.......T.T....................C.......................................... MG570449.1_Luxilus_cornutus_isol ..G...T.......T.T....................C.......................................... MG570450.1_Pimephales_notatus_is ......T.......T.T....................C.......................................... MG570451.1_Notropis_bifrenatus_i ......T.......T.T....................C.......................................... MG570453.1_Exoglossum_maxillingu ......T.......T.T.......C............C......A................................... MG570454.1_Pimephales_promelas_i ......T.......T.T....................C.......................................... MG570455.1_Notropis_atherinoides ..G...T.......T.T....................C.......................................... MG570456.1_Notropis_atherinoides ..G...T.......T.T....................C.......................................... MG570457.1_Pimephales_notatus_is ......T.......T.T....................C.......................................... MG570458.1_Pimephales_notatus_is ......T.......T.T....................C.......................................... MK421554.1_Parabramis_pekinensis ............................................A................................... MT333789.1_Notropis_lutipinnis_v ......T.......T.T....................C.......................................... MT364325.1_Hybognathus_amarus_mi G.....T.......T.T....................C.........................G................ MT501368.1_Gila_cypha_isolate_SN ......T.........T.....C.....................A..................G................ MT501369.1_Notropis_simus_pecose ......T.......T.T.T..................C.......................................... MT501378.1_Hybognathus_amarus_is ......T.......T.T....................C.........................G................ MT501385.1_Notropis_jemezanus_vo ..G...T.......T.T.......C..G.........C.......................................... MT501391.1_Rhinichthys_osculus_i ......T.......T.T....................C.......................................... MT667239.1_Rhinichthys_osculus_t ......T.......T.T....................C.......................................... MT667242.1_Luxilus_cornutus_vouc ..G...T.......T.T....................C.......................................... MW300340.1_Hybognathus_placitus_ ......T.........T....................C.......................................... MW300341.1_Hybognathus_placitus_ ......T.........T....................C.......................................... NC_013763.1_Mylocheilus_caurinus ..G...T.......T.T....................C......A................................... NC_033926.1_Opsopoeodus_emiliae_ G.....C.......T.T.A....T.............CC.....A................................... NC_037008.1_Notropis_chalybaeus_ ......T.......T.T....................C.......................................... NC_037009.1_Notropis_heterolepis ......T.......T.T....................C.......................................... NC_037010.1_Rhinichthys_obtusus_ ......T......TT.TGG.....C............C.......................................... NC_037014.1_Notropis_hudsonius_i ..G...TT......T.T....................C.......................................... NC_037015.1_Exoglossum_maxilling ......T.......T.T.......C............C......A................................... NC_054086.1_Ptychocheilus_lucius ......T.........T.....C.....................A................................... NC_054257.1_Gila_cypha_isolate_S ......T.........T.....C.....................A..................G................ NC_054259.1_Gila_nigrescens_isol ......T.........T.....C.....................A..................G................ NC_054260.1_Hybognathus_amarus_i ......T.......T.T....................C.........................G................ NC_054262.1_Notropis_jemezanus_v ..G...T.......T.T.......C............C.......................................... Pimephales_notatus_R2S3_________ ......T.......T.T....................CC......................................... Pimephales_tenellus_tenellu_R2S1 G.....TT......T.T....................C.......................................... Pimephales_tenellus_parvice_R2S2 ..C...TT......T.T....................C.......................................... Pimephales_notatus_R1S1_________ ......T.......T.T....................CC......................................... MG570452.1_Pimephales_promelas_i ......T.......T.T....................C.......................................... MG570452.1_Pimephales_promelas_S ......T.......T.T....................C.......................................... AB626850.1_Megalobrama_terminali CAAGTGGAAGCTATGAATCCAACAACCTTAATTATATCATCCTCACTTATTTTAGTTCTCACTATCCTTATATTCCCCCT AP010779.1_Mylocheilus_caurinus_ ....CA..........GCT.....G..C.G..C........T...T.CC.......C.....A..T.....T..T..A.. AP011215.1_Gila_sp._1460_mitocho ....C..G.A........TT.GT.G..C....C..G..........................GG.............T.. AP011263.1_Scardinius_erythropht ....CA..........GC......G..C....G..G....................C...G.A.C....G.G........ AP011267.1_Algansea_lacustris_mi ....CA..........CCT.G...G.......C.....C..G...T.C.CC...A.CA....A..T.....T..A..T.. AP011268.1_Yuriria_alta_mitochon ....CA..........CCT.....G..C..G.C.....C......T.CC.....A..A.T..A..T...G.CC.A..T.. AP011273.1_Hybognathus_nuchalis_ ....CA..........CCT........C..G.C.....C......T.CC.....A..A.T..A........T..A...T. AP011274.1_Couesius_plumbeus_mit ....C...........CC.AC..GG.......C..G.............C...G..C...G.G.C....C....T..A.. AP011275.1_Platygobio_gracilis_m ....C...........CCT.....G..C..GCC..G.........T.CC.....A..G.T..A..T...G.T..A..G.. AP011277.1_Erimystax_dissimilis_ ....C...........CC.T.......C.T.CC............T.CC.....A....A.TA......G.C..T..T.. AP011279.1_Pimephales_promelas_m ....C...........CCT........C..G.C.....C......T.CC.....A.CA.T..A..T.....T..A..... AP011280.1_Clinostomus_elongatus ................G...G..G...C..GCC........T...T.CC.......C.....AG.T.....T..T..G.. AP012079.1_Luxilus_chrysocephalu ....C...........CCT.....G..C..G.C.....T......T.CC.....A.CG....A......G.T..A..T.. AP012080.1_Macrhybopsis_gelida_m ....C.A.........CCG.C...G..C..GCC..G......CTTT.CC..C..A..A.T..G..T...G.T..A..AT. AP012083.1_Notropis_atherinoides ....C...........CCT.....G..C..G.C.....C......T.CC.....A..G.A..G......G.CC.G..T.. AP012084.1_Notropis_baileyi_mito ....CA..........CCT.....G..C..G.C..G..C..T...T.CC.....A..G.T..A......G.TC.A..T.. AP012087.1_Cyprinella_galactura_ ....C...........CCT.....G..C..G.C.....C......T.CC.....A.CG....A......G.C.CG..T.. AP012088.1_Hybopsis_lineapunctat ....C...........CCT.....G..CA.G.C..G..C.....TT.CC.....A.CA.T..A........TC.A..... AP012090.1_Luxilus_cornutus_mito ....C...........CCT.....G..C..G.C.....C......T.CC.....A.CG.T..A........T..G..T.. AP012091.1_Lythrurus_ardens_mito ....C...........CCT........C..G.C.....C......T.CC.....A.CA.T..A......G.CC....T.. AP012092.1_Lythrurus_fumeus_mito ....C...........CCT.......AC..G.C..G..C......T.CC..C..A..G.T..C......G.T..A..T.. AP012093.1_Lythrurus_lirus_mitoc ....C...........CCT.....G..C..G.C.....C......T.CC.....A.C..T..A......G.CC....TT. AP012094.1_Lythrurus_umbratilis_ ....C...........CCT........C..G.C.....C......T.CC.....A.CG.T..A......G.CC....T.. AP012095.1_Macrhybopsis_meeki_mi ....C.A.........CCT........C..GC...G......CTTT.CC..C..A.CA.T..A..T...G.T..A..AT. AP012097.1_Notropis_bifrenatus_m ................CCT.....G..C....C.....C..T...T..C.....A.CG.T..A..T...G.TC.G..T.. AP012098.1_Pimephales_sp._MCZunc ....C...........CCT.....G..C..G.C.....C......T.C......A.CA.T..A......G.T..A..TT. AP012100.1_Notropis_telescopus_m ....C...........CCT.....G..C..G.C.....C......T.CC.....A.CG.T..A..T...G.T..A..... AP012101.1_Pimephales_notatus_mi ....C...........CCT.....G..C..G.C.....C......T.C......A..A.T..A......G.T..A..TT. AP012102.1_Pimephales_vigilax_mi ....CA..........CCT.....G.T...C.......C......T.C......A..A.T..A..T...G.TC.A..... AP012103.1_Pogonichthys_macrolep ....CA..........GCT..G..G..C.G..C............T.CC.C.....CT....A..T..C..T..T..A.. AP012106.1_Richardsonius_balteat ....CA..........CC......G.....G.C..G.....T.....CC.A.....C.....GG.T...G.C..T..G.. AP012108.1_Notropis_chrosomus_mi ....C...........TCT.....G..C....C.....C......T.CC.....A.CG.T..A........CC.G..T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....CA..........CCT.....G.T...C.......C......T.C......A..A.T..A..T...G.TC.A..... Pimephales_vigilax_R1S3_________ ....CA..........CCT.....G.T...C.......C......T.C......A..A.T..A..T...G.TC.A..... DQ536429.1_Notropis_stramineus_m ....C...........CCT.....G..C.G..C.....C......T.CC..C.GA.CA.T..A......G.T..G...T. JX910141.1_Squaliobarbus_curricu ..................T........C.......................C..........A...........T..AT. KC351187.1_Squaliobarbus_curricu ..................T........C.......................C..........A...........T..AT. KT278765.1_Pimephales_promelas_m ....C...........CCT........C..G.C.....C......T.CC.....A.CA.T..A..T.....T..G..... KT289925.1_Pimephales_promelas_m ....C...........CCT........C..G.C.....C......T.CC.....A.CA.T..A..T.....T..A..... KT424924.1_Rhinichthys_osculus_m ....C...........CC..G...G..C..GCC............T.C......A.C..T..AG.T.....C.....A.. KU200257.1_Chanodichthys_ilishae ................................C................C.C.......T.T......C...C.T..T.. MF972070.1_Siphateles_bicolor_mo ....C..G.A........TT.GT.G..C....C..G....................C.....GG..........T..... MG570407.1_Notropis_chalybaeus_v ....C...........CCT.....G..C..G.C.....C......T.CC.....A..G.T..A..T.....T..A..T.. MG570408.1_Notropis_bifrenatus_v ........G.......CCT.....G..C....C.....C..T...T..C.....A.CG.T..A..T...G.TC.G..T.. MG570413.1_Notropis_heterolepis_ ....C...........CC.T....G..C..G.C.....C......T.CC.....A.CG.T..A......G.T..A..... MG570416.1_Rhinichthys_obtusus_v ....C...........CC...G..G..C...CC.....G......T.CC.....A.C.....AG.......T.....G.. MG570417.1_Rhinichthys_obtusus_v ....C...........CC...G..G..C...CC.....G......T.CC.....A.C.....AG.......T.....G.. MG570420.1_Pimephales_notatus_vo ....C...........CCT.....G..C..G.C.....C......T.C......A.CA.T..A......G.T..A..TT. MG570443.1_Notropis_hudsonius_is ....C...........CCTT.G..G..C....C.....T......T.CC.C..GA..G.TT.A..T...G.T..A..T.. MG570444.1_Rhinichthys_atratulus ....C...........CC......G..C..GCC.....G......T.CC.C...C.C.....AG.T.....T..T..... MG570445.1_Rhinichthys_atratulus ....C...........CC......G..C..GCC.....G......T.CC.C...C.C.....AG.T.....T..T..... MG570447.1_Luxilus_cornutus_isol ....C...........CCT.....G..C..G.C.....C......T.CC.....A.CG.T..A........T..G..T.. MG570449.1_Luxilus_cornutus_isol ....C...........CCT.....G..C..G.C.....C......T.CC.....A.CG.T..A........T..G..T.. MG570450.1_Pimephales_notatus_is ....C...........CCT.....G..C..G.C.....C......T.C......A.CA.T..A......G.T..A..TT. MG570451.1_Notropis_bifrenatus_i ................CCT.....G..C....C.....C..T...T..C....TA.CG.T..A..T...G.TC.G..T.. MG570453.1_Exoglossum_maxillingu ....C...........CC.T.......C.T.CC............T.CC.....A....A.TA......G.C..T..T.. MG570454.1_Pimephales_promelas_i ....C...........CCT..G.....C..G.C.....C......T.CC.....A.CA.T..A..T.....T.CA..... MG570455.1_Notropis_atherinoides ....C...........CCT.....G..C..G.C.....C..T...T.CC.....A..G.A..G......G.CC.G..T.. MG570456.1_Notropis_atherinoides ....C...........CCT.....G..C....C.....C......T.CC.....A..G.A..G......G.CC.G..T.. MG570457.1_Pimephales_notatus_is ....C...........CCT.....G..C..G.C.....C......T.C......A.CA.T..A......G.T..A..TT. MG570458.1_Pimephales_notatus_is ....C...........CCT.....G..C..G.C.....C......T.C......A.CA.T..A......G.T..A..TT. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ....C...........CCT.....G..C....C.....C......T.CC....GA..G....A......G.CC.G..T.. MT364325.1_Hybognathus_amarus_mi ....CA..........CCT........C..G.C.....C......T.CC.....A..A.T..A........C..A...T. MT501368.1_Gila_cypha_isolate_SN ....C..G.A........TT.GT.G..C....C..G..........................GG....C........... MT501369.1_Notropis_simus_pecose ....C...........CCAT.G..G..C..G.C..G..C......T.CC.A...A.CA.T..A......G.TC.A..T.. MT501378.1_Hybognathus_amarus_is ....CA..........CCT........C..G.C.....C......T.CC.....A..A.T..A........C..A...T. MT501385.1_Notropis_jemezanus_vo ....C...........CCT.....G..C..G.C.....C..T...T.CC.....A..G.A..A......G.CC.G..T.. MT501391.1_Rhinichthys_osculus_i ....C...........CC.TG...G.GC..GCC............T.C.....GA.C..T..AG.T...G.TC....... MT667239.1_Rhinichthys_osculus_t ....C...........C...G...G.GC..GCC............T.C.....GA.C..T..AG.T...G.TC....... MT667242.1_Luxilus_cornutus_vouc ....C...........CCT.....G..C..G.C.....C......T.CC.....A.CG.T..A........T..G..T.. MW300340.1_Hybognathus_placitus_ ....C...........CCT........C..G.C.....C......T.CC.....A..A.T..A......G.T..A...T. MW300341.1_Hybognathus_placitus_ ....C...........CCT........C..G.C.....C......T.CC.....A..A.T..A......G.T..A..... NC_013763.1_Mylocheilus_caurinus ....CA..........GCT.....G..C.G..C........T...T.CC.......C.....A..T.....T..T..A.. NC_033926.1_Opsopoeodus_emiliae_ .G..CAA........CCCT.....G..C..........C......T.CG...G.A..A...T.........TC.A...T. NC_037008.1_Notropis_chalybaeus_ ....C...........CCT.....G..C..G.C.....C......T.CC.....A..G.T..A..T.....T..A..T.. NC_037009.1_Notropis_heterolepis ....C...........CC.T....G..C..G.C.....C......T.CC.....A.CG.T..A......G.T..A..... NC_037010.1_Rhinichthys_obtusus_ ....C...........CC...G..G..C...CC.....G......T.CC.....A.C.....AG.......T.....G.. NC_037014.1_Notropis_hudsonius_i ....C...........CCTT.G..G..C....C.....T......T.CC.C..GA..G.TT.A..T...G.T..A..T.. NC_037015.1_Exoglossum_maxilling ....C...........CC.T.......C.T.CC............T.CC.....A....A.TA......G.C..T..T.. NC_054086.1_Ptychocheilus_lucius ....CA.G.A........TT.GT.G..C....C..G..........................GG.......G........ NC_054257.1_Gila_cypha_isolate_S ....C..G.A........TT.GT.G..C....C..G..........................GG....C........... NC_054259.1_Gila_nigrescens_isol ....C..G.A........TT.GT.G..C....C..G..........................GC..........T..T.. NC_054260.1_Hybognathus_amarus_i ....CA..........CCT........C..G.C.....C......T.CC.....A..A.T..A........C..A...T. NC_054262.1_Notropis_jemezanus_v ....C...........CCT.....G..C..G.C.....C..T...T.CC.....A..G.A..A......G.CC.G..T.. Pimephales_notatus_R2S3_________ ....C...........CCT.....G..C..G.C.....C......T.C......A.CA.T..A......G.T.CA..... Pimephales_tenellus_tenellu_R2S1 ....C...........CCT.....G..C..G.C.....C......T.CC..C..A.CA.T..A.CT.....TC.A..... Pimephales_tenellus_parvice_R2S2 ....C...........CCT.....G..C..G.C.....C......T..C..C..A.CA.T..A.CT.....TC.A..... Pimephales_notatus_R1S1_________ ....C...........CCT.....G..C..G.C.....C......T.C......A.CA.T..A......G.T.CA..... MG570452.1_Pimephales_promelas_i ....C...........CCT........C..G.C.....C......T.CC.....A.CA.T..A..T.....T.CA..... MG570452.1_Pimephales_promelas_S ....C...........CCT........C..G.C.....C......T.CC.....A.CA.T..A..T.....T..A..... AB626850.1_Megalobrama_terminali ACTAACAACACTAAGCCCCAAACCACAAAAACCAGAATGAGCAAATACACATGTCAAAACCGCCGTCAGCACCTCATTCT AP010779.1_Mylocheilus_caurinus_ ...G...G.....GC...A.GC..T.................GGCC.....C..T..G..T...........TG....T. AP011215.1_Gila_sp._1460_mitocho .....TG..G........A..G..C.....GT....G..G..GGG.........T.....T.....T..T...G....T. AP011263.1_Scardinius_erythropht .........GT.......G..C..T..G..G...........T..C.....C..A.....T..G.........G...... AP011267.1_Algansea_lacustris_mi ...C.....GT...AT..A..C..C..G...T....T......GC...C.....A...G.T.....T......G...... AP011268.1_Yuriria_alta_mitochon G..C.TG........T..A.GC..T...G.G...A.T.....G.....CT....T.....T.....T.....TG...... AP011273.1_Hybognathus_nuchalis_ ...C.T....T.......A..C..T...C....TA.C......G...ATT....A.....T.....T.....TG...... AP011274.1_Couesius_plumbeus_mit ..........T....T..A..C..CA..G.CT...G......GCGC.....C..T.....T..T.........G....T. AP011275.1_Platygobio_gracilis_m C..CG.G.......A...A.GC..T.G........G...G...GC...G..C..T.....T.....T...G..G...... AP011277.1_Erimystax_dissimilis_ ...C..........AT..A..C..T..................GC......C..T.....T..TA....T..TG.C.... AP011279.1_Pimephales_promelas_m ...T.TG.......CT..AGCT..T........TA.C.....TG....CT.C..A.....T.....T......G...... AP011280.1_Clinostomus_elongatus .....T......G.....A..C..T...........G......TCC...T.C..T.....T.....T.....TG...... AP012079.1_Luxilus_chrysocephalu G..T.T............A..T..T...GG...TA.T.....GG.C..C.....A...G.T.....T..T..TG...... AP012080.1_Macrhybopsis_gelida_m .A.TG.G........T..A..C..T..............G...GCC........T.....T.....T.....TG.C.... AP012083.1_Notropis_atherinoides C..C.T........AT.....T......G....CA.C......G..G.C..C..G.....T.....T..T..TG...... AP012084.1_Notropis_baileyi_mito ...C.T......G.AT..A.....C...G....TA.T......G....C.....A.....T..T..T..T..GG...... AP012087.1_Cyprinella_galactura_ ...C.T......G.....A..C..C......G.TACG......GGC..CT....T....AT.....T.....TG...... AP012088.1_Hybopsis_lineapunctat G..C.T........CT..A.....C...GG...CA.C........C..CT....A...........T.....TG...... AP012090.1_Luxilus_cornutus_mito G..T.T........A...A..C..T...G.G..T..T.....GG.C..C..C..G.....T..T..T..T..TG...... AP012091.1_Lythrurus_ardens_mito ...T...........T..A.....C...GC...TA.T......G....TT....A...........T.....TG....T. AP012092.1_Lythrurus_fumeus_mito G..T.T......T..T..A..T..C...GG...TA.T......G....T.....A...........T..T..TG...... AP012093.1_Lythrurus_lirus_mitoc ...T..........CT..A..G..T...GC....AGT.....GG....TT.C..A...G.......T.....TG...... AP012094.1_Lythrurus_umbratilis_ ...T...........T..A..G..C...GC...TA.T......G....TT....A...........T.....TG...... AP012095.1_Macrhybopsis_meeki_mi .A.TG.........AT..A..T..T..................GCC........T.....T..T..T.....TG...... AP012097.1_Notropis_bifrenatus_m G....T........AT..A..G..C........T..C........C..C..C..A.....T........T..TG....T. AP012098.1_Pimephales_sp._MCZunc ...T.T...C....AT..ATCT..C...G....CA.C.....T.....T.....A.....T.....T.....TG...... AP012100.1_Notropis_telescopus_m ...T.T.........T..G.GC..C...G....CA.C......G....CT....A.....T.....T......G...... AP012101.1_Pimephales_notatus_mi ...T.T...C..T.AT..ATCT..C...G....CA.C.....T.....T.....A.....T.....T.....TG...... AP012102.1_Pimephales_vigilax_mi ...T.T....T....T..G.CC..T...G....CA.C.....T..C..CT.C..A.....T.....T......G...... AP012103.1_Pogonichthys_macrolep .......G......C...GGGC..T.........A.G......GCC.....C..T..G..T...........TG....T. AP012106.1_Richardsonius_balteat ...............T..GT.C..TA..G..T..........GGCC.....C..T..G..............TG....T. AP012108.1_Notropis_chrosomus_mi C..T.T........CT..A........GG....TA.T.....GC.CG.CT.C..G...........T.....AG...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...T.T....T....T..G.CC..T...G....CA.C.....T..C..CT.C..A.....T.....T......G...... Pimephales_vigilax_R1S3_________ ...T.T....T....T..G.CC..T...G....CA.C.....T..C..CT.C..A.....T.....T......G...... DQ536429.1_Notropis_stramineus_m ...C.TG..G.....T..T..T..C...G..T.GACC......C....CT....A..G..T.....T.....GG.G.... JX910141.1_Squaliobarbus_curricu ..................A..G......................GC.....C..T......................... KC351187.1_Squaliobarbus_curricu ..................A..G......................GC.....C..T......................... KT278765.1_Pimephales_promelas_m G..T.TG........T..AGCC..T........TA.T.....TG....CT.C..A.....T.....T......G...... KT289925.1_Pimephales_promelas_m ...T.TG.......CT..AGCT..T........TA.C.....TG....CT.C..A.....T.....T......G...... KT424924.1_Rhinichthys_osculus_m ...C.....G.....T..AGCC..C.T....TTG..G..G...GC......C..T.....T...........TG...... KU200257.1_Chanodichthys_ilishae ..............A...T.........................G......C.......................G.... MF972070.1_Siphateles_bicolor_mo .....TG..G..G.A...A.....C.....G....GG......GGG.....C..T..G..T.....T..T...G....T. MG570407.1_Notropis_chalybaeus_v G..C.T............A.....T...G....T..C.......GC..CT.C..A.....T..T..T..T..AG...... MG570408.1_Notropis_bifrenatus_v G....T........AT..A.....C........T..C........C..C..C..A.....T........T..TG....T. MG570413.1_Notropis_heterolepis_ G..T.T.........T..G..C..T...GG...TA.C.....TG....C.....A....TT.....T..T..TG.G.... MG570416.1_Rhinichthys_obtusus_v ...G.....G....AT..A..C..C.....GT...GG..G..CGCC..G..C..T....AT........T..TG.G.... MG570417.1_Rhinichthys_obtusus_v ...G.....G....AT..A..C..C.....GT...GG..G..CGCC..G..C..T....AT........T..TG.G.... MG570420.1_Pimephales_notatus_vo ...T.T...C....AT..ATCT..C...G....CA.C.....T.....T.....A.....T.....T.....TG...... MG570443.1_Notropis_hudsonius_is ...C.T...CT...AT..A..C.....G...T..A.T......GCC..C.....A.....T.....T.....TG...... MG570444.1_Rhinichthys_atratulus .....T...G.....T..A..T..T......TT..GG..G..CGCC..G..C..T.....T...........TG...... MG570445.1_Rhinichthys_atratulus .....T...G..G..T..A..T..T......TT..GG..G..CGCC..G..C..T.....T...........TG...... MG570447.1_Luxilus_cornutus_isol G..T.T........A...A..C..T...G.G..T..T.....GG.C..C..C..G.....T..T..T..T..TG...... MG570449.1_Luxilus_cornutus_isol G..T.T........A...A..C..T...G.G..T..T.....GG.C..C..C..G.....T..T..T..T..TG...... MG570450.1_Pimephales_notatus_is ...T.T...C....AT..ATCT..C...G....CA.C.....T.....T.....A.....T.....T.....TG...... MG570451.1_Notropis_bifrenatus_i G....T........AT..A..G..C........T..C........C..C..C..A.....T........T..TG....T. MG570453.1_Exoglossum_maxillingu ...C..........AT..A..C..T..................GC......C..T.....T..TA....T..TG.C.... MG570454.1_Pimephales_promelas_i ...T.TG.......CT..AGCT..T........TA.C.....TG....CT.C..A.....T.....T......G...... MG570455.1_Notropis_atherinoides C..C.T........AT.....C......G....TA.C......G..G.C..C..G.....T.....T..T..TG...... MG570456.1_Notropis_atherinoides C..C.T........AT.....T......G....CA.C......G..G.C..C..G.....T.....T..T..TG...... MG570457.1_Pimephales_notatus_is ...T.T...C....AT..ATCT..C...G....CA.C.....T.....T.G...A.....T.....T.....TG...... MG570458.1_Pimephales_notatus_is ...T.T...C....AT..ATCT..C...G....CA.C.....T.....T.....A.....T.....T.....TG...... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v C..T.T........A.........C...G....TA.T........CG.TT....G.....T.....T..T..AG...... MT364325.1_Hybognathus_amarus_mi ...C.T....T...AT..G..C..T..GG....TA.C......G....TT....A.....T.....T.....TG...... MT501368.1_Gila_cypha_isolate_SN .....TG..G........A..G..T.G...GT....G.....GGG.........T.....T.....T..T...G....T. MT501369.1_Notropis_simus_pecose C..C.T......G.A...A.....C...G...TT..T.......GC..CT..........T...........AG...... MT501378.1_Hybognathus_amarus_is ...C.T....T...AT..G..C..T..GG....TA.C......G....TT....A.....T.....T.....TG...... MT501385.1_Notropis_jemezanus_vo C..C.TG........T....GC..G...GG...TA.C.....GG.C..C..A..G...G.T.....T..T..TG...... MT501391.1_Rhinichthys_osculus_i ...C.....G....AT..A..C..T.GG..GTT...G..G...GCC.....C..T..G..T...........AG...... MT667239.1_Rhinichthys_osculus_t ...C.....G....AT..A..C..T.GG..GTT...G..G...GCC.....C..T..G..T......G....AG...... MT667242.1_Luxilus_cornutus_vouc G..T.T........A...A..C..T...G.G..T..T.....GG.C..C..C..G.....T..T..T..T..TG...... MW300340.1_Hybognathus_placitus_ ...C.T........A...A.GC..T..GGG...TA.C......G....CT....G.....T.....T.....TG...... MW300341.1_Hybognathus_placitus_ ...C.T........A...A.GC..T..GGG...TA.C......G....CT....G.....T.....T.....TG...... NC_013763.1_Mylocheilus_caurinus ...G...G.....GC...A.GC..T.................GGCC.....C..T..G..T...........TG....T. NC_033926.1_Opsopoeodus_emiliae_ ...T.T....T...A...A.....C........T..C.....TG....TTGC..A........TA.T.....TG...... NC_037008.1_Notropis_chalybaeus_ G..C.T............A.....T...G....T..C.......GC..CT.C..A.....T..T..T..T..AG...... NC_037009.1_Notropis_heterolepis G..T.T.........T..G..C..T...GG...TA.C.....TG....C.....A....TT.....T..T..TG.G.... NC_037010.1_Rhinichthys_obtusus_ ...G.....G....AT..A..C..C.....GT...GG..G..CGCC..G..C..T....AT........T..TG.G.... NC_037014.1_Notropis_hudsonius_i ...C.T...CT...AT..A..C.....G...T..A.T......GCC..C.....A.....T.....T.....TG...... NC_037015.1_Exoglossum_maxilling ...C..........AT..A..C..T..................GC......C..T.....T..TA....T..TG.C.... NC_054086.1_Ptychocheilus_lucius .....TG..G...GA...A..G..C.G....T....G.................T.....T.....T..T...G....T. NC_054257.1_Gila_cypha_isolate_S .....TG..G........A..G..T.G...GT....G.....GGG.........T.....T.....T..T...G....T. NC_054259.1_Gila_nigrescens_isol ...G.TG..G........A..G..C..G..GT....G.....GTG.........T.....T.....T..T...G....T. NC_054260.1_Hybognathus_amarus_i ...C.T....T...AT..G..C..T..GG....TA.C......G....TT....A.....T.....T.....TG...... NC_054262.1_Notropis_jemezanus_v C..C.TG........T....GC..G...GG...TA.C.....GG.C..C..A..G...G.T.....T..T..TG...... Pimephales_notatus_R2S3_________ ...C.T........AT..ATCC..C........CA.C.....T..G..TT....A.....T..T..T.....TG...... Pimephales_tenellus_tenellu_R2S1 .....TG.......AT..A.CC......GG...TA.C.....T..C..C.....A.....T..T..T..T..TG...... Pimephales_tenellus_parvice_R2S2 .....T........AT..A.CC......GG...CA.C.....T.GC..C..C..A.....T..T..T..T..TG...... Pimephales_notatus_R1S1_________ ...C.T........AT..ATCC..C........CA.C.....T..G..TT....A.....T..T..T.....TG...... MG570452.1_Pimephales_promelas_i ...T.TG.......CT..AGCT..T........TA.C.....TG....CT.C..A.....T.....T......G...... MG570452.1_Pimephales_promelas_S ...T.TG.......CT..AGCT..T........TA.C.....TG....CT.C..A.....T.....T......G...... AB626850.1_Megalobrama_terminali TCATTAGTCTTCTCCCACTCATAATTTTTCTAGACCAGGGGATAGAAAGCATCACCACAAACTGACAATGAATGAACACA AP010779.1_Mylocheilus_caurinus_ ....C..C..G..A..G.....GG....C..C........AG.......T..T..T.................A...... AP011215.1_Gila_sp._1460_mitocho ..G....C..GT.A.....T...........T..T......G....G..TG.T.......................T... AP011263.1_Scardinius_erythropht .......C..A........T........C..C........AG..........T..T...........C.....A..T... AP011267.1_Algansea_lacustris_mi ..G.A..C..A..A..C..A...G...AC..CAC...A..AGC...G.A...T..............G.....A...... AP011268.1_Yuriria_alta_mitochon ..G.G..C..AT.G.............AC..CAC...A..AGC.....AT..T....................A..T... AP011273.1_Hybognathus_nuchalis_ .TG.A..C..CT.G.....T..GG...AC..C.C...A..AGCC....AT.......................A..T... AP011274.1_Couesius_plumbeus_mit ....C..C..GT.A..C...........C..C..T..A...GC.....CT..TGTT.....T.....C........T... AP011275.1_Platygobio_gracilis_m ..G.A..C..GT.G.....TG.G..C..C........A..AGC.....AT.....A...........G.....A..T... AP011277.1_Erimystax_dissimilis_ ....C..C..AT.A.....T........C.....T..A...G....G..T..TGTT..............G..A...... AP011279.1_Pimephales_promelas_m ..G.A..C..A..A.....T..G....AC..CAC...A..AGC....GTTG.T.T..................A...... AP011280.1_Clinostomus_elongatus ....C..C..AT.A.....T.................A..AG..........T..T.....T...........A...... AP012079.1_Luxilus_chrysocephalu ..G.A..C..AT.G..C..T..G..G.AC..G.C...A..AGC...G.A...T..T.................A...... AP012080.1_Macrhybopsis_gelida_m .TG.A..C..AG.A.....T.......AC..GTCA..A..AGC.....AT..T..T.....T...........A..T... AP012083.1_Notropis_atherinoides ..G.A.....AT.A.....A.......AC..G.C...A...GC.....A.G......................A..T..C AP012084.1_Notropis_baileyi_mito ..G.A..C..A..A.....TGCG..G.AC...AC.......GC.....AT..T....................A..T... AP012087.1_Cyprinella_galactura_ .TG....C..AG.A..G....C.....AC...A.T..A...GC...G.AT..T..T.................A..T... AP012088.1_Hybopsis_lineapunctat ..G.A.....GT.A.....T.....C.AC..G.C.A....AGC.....AT..T..............G.....A..T... AP012090.1_Luxilus_cornutus_mito ..G.G..C..GT.A.....T.......AC....C...A...GC.....AT..T..T.................A...... AP012091.1_Lythrurus_ardens_mito .TG.A..C..AT.G..C..T..G....AC..GTC...A..AGC.....AT..T..............G.....A..T... AP012092.1_Lythrurus_fumeus_mito .TG.A..C..GT.A..C.....G....AC....C...A...GC.....AT..T.....G........G.....A..T... AP012093.1_Lythrurus_lirus_mitoc .TG.A..C..A..G..C..A.CG...CAC..GTCT..A..AGC...G.AT..T..............G.....A...... AP012094.1_Lythrurus_umbratilis_ .TG.A..C..AT.G..C..T..G....AC..GTC...A..AGC.....AT..T..............G.....A..T... AP012095.1_Macrhybopsis_meeki_mi .TG.C..C..AG.A.....T.......A.....CA..A..ATC.....AT..T..T.....T...........A..T... AP012097.1_Notropis_bifrenatus_m ..G.A..C..GT.A.....A..G....AC..G.C...A..AGC...G.A...T..T..G..............A...... AP012098.1_Pimephales_sp._MCZunc ..G.G..C..AT.A...T.A.......AC..T.C...A..AGC.....A...T..T..G..T........G..A..T... AP012100.1_Notropis_telescopus_m ..G.A..C..G..A......G......A.....C...A..A.C.....AT..T....................A..T... AP012101.1_Pimephales_notatus_mi ..G.G..C..AT.A...T.A.......AC..T.C...A..AGC.....A...T..T..G..T........G..A..T... AP012102.1_Pimephales_vigilax_mi .TG.A..CT.A..A.....T.......A...TACT..A..A.C...G.AT..TGT...T..............A..T... AP012103.1_Pogonichthys_macrolep ....C..C..AT.A.....T..G.................AG.......T.....T.................A..T... AP012106.1_Richardsonius_balteat ....C..C..A..A.....T.................A..AGC...G..T..T..T.................A..T.T. AP012108.1_Notropis_chrosomus_mi ..G.A.....A..T.............AC..G.C...A..AGC.....AT..T..T...........G.....A..T... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .TG.A..CT.A..A.....T.......A...TACT..A..A.C...G.AT..TGT...T..............A..T... Pimephales_vigilax_R1S3_________ .TG.A..CT.A..A.....T.......A...TACT..A..A.C...G.AT..TGT...T..............A..T... DQ536429.1_Notropis_stramineus_m .TG.G..C..GT.A........GG...A...G.C...A..AGCT..G.AT........G.....G........A..T... JX910141.1_Squaliobarbus_curricu .T..C..C........T........C..CT.G.....A..AG.G........T..T...........C.....A...... KC351187.1_Squaliobarbus_curricu .T..C..C........T........C..CT.G.....A..AG.G........T..T...........C.....A...... KT278765.1_Pimephales_promelas_m ..G.G..C..A..A.....T..G....AC..CAC...A..AGC.....TTG.T.T..................A..T... KT289925.1_Pimephales_promelas_m ..G.A..C..A..A.....T.......AC..CACA..A..AGC.....TT..T.T..................A...... KT424924.1_Rhinichthys_osculus_m .......C..AT.A..G..T..G..C.....C..T..A........G.CT..T..TT...G......G.....A..T... KU200257.1_Chanodichthys_ilishae ....C..C.................C........T..A..A..........................G.....A...... MF972070.1_Siphateles_bicolor_mo .......C..CT.A.....T..G.....C..T..T......G.......TG.T....................A..T... MG570407.1_Notropis_chalybaeus_v ..G.A..C..C..A.....T..G....ACT...C...A..AGC.....AT..T..T...........G.....A..T... MG570408.1_Notropis_bifrenatus_v ..G.A..C..GT.A.....A..G....AC..G.C...A..AGC...G.A...T..T..G..............A...... MG570413.1_Notropis_heterolepis_ .TG.A..CT.AT.A.........T.G.AC..G.C...A..AGC.....AT..T....................A..T... MG570416.1_Rhinichthys_obtusus_v ....C..C..AT.A..G..T..G........T.....A..A........T..TT.T........G........A.G.... MG570417.1_Rhinichthys_obtusus_v ....C..C..AT.A..G..T..G........T.....A..A........T..TT.T........G........A.G.... MG570420.1_Pimephales_notatus_vo ..G.G..C..AT.A...T.A.......AC..T.C...A..AGC.....A...T..T..G..T........G..A..T... MG570443.1_Notropis_hudsonius_is ..G.G..C..G..A..T..T........C...AC...A..AGA....GCT..T.T......T...........A..T... MG570444.1_Rhinichthys_atratulus ....C..C..GT.A..G..T..G........T........AG.......T..TT.T........G........A..T... MG570445.1_Rhinichthys_atratulus ....C..C..GT.A..G..T..G........T........AG.......T..TT.T........G........A..T... MG570447.1_Luxilus_cornutus_isol ..G.G..C..GT.A.....T.......AC....C...A...GC.....AT..T..T.................A..T... MG570449.1_Luxilus_cornutus_isol ..G.G..C..GT.A.....T.......AC....C...A...GC.....AT..T..T.................A..T... MG570450.1_Pimephales_notatus_is ..G.G..C..AT.A...T.A.......AC..T.C...A..AGC.....A...T..T..G..T........G..A..T... MG570451.1_Notropis_bifrenatus_i ..G.A..C..GT.A.....A..G....AC..G.C...A..AGC...G.A...T..T..G..............A...... MG570453.1_Exoglossum_maxillingu ....C..C..AT.A.....T........C.....T..A...G....G..T..TGTT..............G..A...... MG570454.1_Pimephales_promelas_i ..G.A..C..A..A.....T.......AC..CACA..A..AGC.....TT..T.T..................A...... MG570455.1_Notropis_atherinoides .TG.A..C..GT.A.....A.......A...G.C...A...GC.....A.G......................A.....C MG570456.1_Notropis_atherinoides ..G.A.....AT.A.....A.......AC..G.C...A...GC.....A.G......................A..T..C MG570457.1_Pimephales_notatus_is ..G.G..C..AT.A...T.A.......AC..T.C...A..AGC.....A...T..T..G..T........G..A..T... MG570458.1_Pimephales_notatus_is ..G.G..C..AT.A...T.A.......AC..T.C...A..AGC.....A...T..T..G..T........G..A..T... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..G.A...T.A..A.....T.......AC..CAC......AGC.....AT..T..T.................A..T... MT364325.1_Hybognathus_amarus_mi ..G.A.....CT.A.....T..GG...AC..C.C......AGCC....AT.......................A..T... MT501368.1_Gila_cypha_isolate_SN .......C..AT.A.....T...........T..T..A...G.......TG.T....................A..T... MT501369.1_Notropis_simus_pecose ..G.A.....A..T.....T..G..G.AC..G.C.......GC...G.AT.....T.................A..T... MT501378.1_Hybognathus_amarus_is ..G.A.....CT.A.....T..GG...AC..C.C......AGCC....AT.......................A..T... MT501385.1_Notropis_jemezanus_vo ..G.A..CT.AT.A.....G...G...AC..G.C...A...GC.....A.G......................A.....C MT501391.1_Rhinichthys_osculus_i .......C..A..A..G..T........C........A..A.......CT..T..T.....T...........A..T... MT667239.1_Rhinichthys_osculus_t .......C..A..A..G..T........C........A..A.......CT.....T.....T...........A..T... MT667242.1_Luxilus_cornutus_vouc ..G.G..C..GT.A.....T.......AC....C...A...GC.....AT..T..T.................A..T... MW300340.1_Hybognathus_placitus_ .TG.A..C..A..A..C..T..GG...AC..C.C...A..AGCC....AT..T..............G.....A..T... MW300341.1_Hybognathus_placitus_ .TG.A..C..A..A..C..T..GG...AC..C.C...A..AGCC....AT..T..............G.....A..T... NC_013763.1_Mylocheilus_caurinus ....C..C..G..A..G.....GG....C..C........AG.......T..T..T.................A...... NC_033926.1_Opsopoeodus_emiliae_ .T..A.....A..A.....A.......AC..CAC...A....C.....A........................A..T... NC_037008.1_Notropis_chalybaeus_ ..G.A..C..C..A.....T..G....ACT...C...A..AGC.....AT..T..T...........G.....A..T... NC_037009.1_Notropis_heterolepis .TG.A..CT.AT.A.........T.G.AC..G.C...A..AGC.....AT..T....................A..T... NC_037010.1_Rhinichthys_obtusus_ ....C..C..AT.A..G..T..G........T.....A..A........T..TT.T........G........A.G.... NC_037014.1_Notropis_hudsonius_i ..G.G..C..G..A..T..T........C...AC...A..AGA....GCT..T.T......T...........A..T... NC_037015.1_Exoglossum_maxilling ....C..C..AT.A.....T........C.....T..A...G....G..T..TGTT..............G..A...... NC_054086.1_Ptychocheilus_lucius .......C..AT.A.....T...........T..T..A..AG.......TG.T........................... NC_054257.1_Gila_cypha_isolate_S .......C..AT.A.....T...........T..T..A...G.......TG.T....................A..T... NC_054259.1_Gila_nigrescens_isol ..G....C..AT.A.....A...........T..T..A.....G.....TG.T.......................T... NC_054260.1_Hybognathus_amarus_i ..G.A.....CT.A.....T..GG...AC..C.C......AGCC....AT.......................A..T... NC_054262.1_Notropis_jemezanus_v ..G.A..CT.AT.A.....G...G...AC..G.C...A...GC.....A.G......................A.....C Pimephales_notatus_R2S3_________ ..G.G..C..AT.A.....AG......A...T.C...A..AGC...G.AT..T..T.................A..T... Pimephales_tenellus_tenellu_R2S1 .T..G..C..AT.A.....A.......AC..TAC...A..AGC.....AT.......................A..T... Pimephales_tenellus_parvice_R2S2 ....G..C..AT.A.....A.......AC..T.C...A..AGC.....AT.......................A..T... Pimephales_notatus_R1S1_________ ..G.G..C..AT.A.....AG......A...T.C...A..AGC...G.AT..T..T.................A..T... MG570452.1_Pimephales_promelas_i ..G.A..C..A..A.....T.......AC..CACA..A..AGC.....TT..T.T..................A...... MG570452.1_Pimephales_promelas_S ..G.A..C..A..A.....T..G....AC..CAC...A..AGC....GTTG.T.T..................A...... AB626850.1_Megalobrama_terminali CACATATTTGATACGAACATCAGCTTTAAATTCGACCACTACTCCCTTATTTTCACCCCCATTGCCCTCTACGTTACCTG AP010779.1_Mylocheilus_caurinus_ ..A........CG.A..............G..T..T.......................T...........T..A..... AP011215.1_Gila_sp._1460_mitocho ..A.....C..CG.A..T..............T....................T..T...........A........... AP011263.1_Scardinius_erythropht ..A........CG................G....................C..T.....T........T.....C..... AP011267.1_Algansea_lacustris_mi ..G........C........T........G..T..........................T.....T....TT..A..A.. AP011268.1_Yuriria_alta_mitochon ..A........C..A..T..T.....C..G..T..T.................T.....T........T.TT..A..A.. AP011273.1_Hybognathus_nuchalis_ ..A........CGTT..T..T..T..C..G..T..T.....T..T.....C...................TT..A..A.. AP011274.1_Couesius_plumbeus_mit ..A..G.....CGT...T..T.....C.....T..T...........A..C..T.....T.....A.............. AP011275.1_Platygobio_gracilis_m ..AG.G.....CG.A.....T........G..............T.....C..T.....T..........TT..A..A.. AP011277.1_Erimystax_dissimilis_ ..GG.......CG.......T...........T........T...........T.....T..C........T..A..A.. AP011279.1_Pimephales_promelas_m ..A.........G.T..T..T........G..T..T.................T..............T.TT..A..A.. AP011280.1_Clinostomus_elongatus ..A........C..A.....T.....C..G..T........T...........T.................T..A..T.. AP012079.1_Luxilus_chrysocephalu ..A........CG....T..T........G..T....................T................T...A..G.. AP012080.1_Macrhybopsis_gelida_m .TA..............T..T.........C.T.........G.T.........................TT..A..A.. AP012083.1_Notropis_atherinoides ..A..C.....CG.A..T..T........G..T..T........T.....C........T..C.....T.T...C..... AP012084.1_Notropis_baileyi_mito ..A........CG.C..TG.T........G..T..T.......................T........T.TT..A..A.. AP012087.1_Cyprinella_galactura_ ..A..G........C.....T...........T....................TGT............T.TT..A..... AP012088.1_Hybopsis_lineapunctat ..A........C..T..T...........G..T.....T.................T..T..........TT..G..A.. AP012090.1_Luxilus_cornutus_mito ..A........CG.A..T..T.....C..G..T..T.......................T........T.TT..A..A.. AP012091.1_Lythrurus_ardens_mito ..A........CG.A..T..T........G..T..T................................T.TT..A..... AP012092.1_Lythrurus_fumeus_mito ..AG.C.....CG.A..T...........G..T..T.................T.....T........T.T...A..... AP012093.1_Lythrurus_lirus_mitoc ..A.........GTA..T..T........G..T..T................................T.TT..A..... AP012094.1_Lythrurus_umbratilis_ ..A........CG.A..T..T........G..T..T................................T.TT..A..... AP012095.1_Macrhybopsis_meeki_mi ATA..G......GTA.....T........GC.T..T..T..TG.T..............T.....T....T...A..A.. AP012097.1_Notropis_bifrenatus_m ..A........C..C..T..T...........T..T..T.....T...........G..T........T.TT..G..A.. AP012098.1_Pimephales_sp._MCZunc ..A.....C..CG.C.....T...........T.....T...........C..T.....T........T.TT..A..A.. AP012100.1_Notropis_telescopus_m ..A........CG.T..T..T...........T..T.......................T..........TT..A..A.. AP012101.1_Pimephales_notatus_mi ..A.....C..CG.C.....T...........T.....T..............T.....T........T.TT..A..A.. AP012102.1_Pimephales_vigilax_mi ..A........CG.C..T..T...........T..T..............C..T.....T..........T...A..G.. AP012103.1_Pogonichthys_macrolep ..A.C......CG................G..T..T..............C........T...........T..A..... AP012106.1_Richardsonius_balteat ..A.........G.A..T..T....................T.................T..............A..T.. AP012108.1_Notropis_chrosomus_mi ..A........C.TC..T..T..T.....G..T....................T.....T........T.T...A..A.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..A........CG.C..T..T...........T..T..............C..T.....T..........T...A..G.. Pimephales_vigilax_R1S3_________ ..A........CG.C..T..T...........T..T..............C..T.....T..........T...A..G.. DQ536429.1_Notropis_stramineus_m ..G........C..C..TG.T.....C.....T..T..............C.....T..T.....T....TT..A..A.. JX910141.1_Squaliobarbus_curricu ..T..G.....C..A..T........C.....T.................C........A.................... KC351187.1_Squaliobarbus_curricu ..T..G.....C..A..T........C.....T.................C........A.................... KT278765.1_Pimephales_promelas_m ..A.........G.T..T..T...........T..T.................T.....T..C.....T.TT..G..A.. KT289925.1_Pimephales_promelas_m ..A.........GTT..T..T........G..T..T.................T........C.....T.TT..A..A.. KT424924.1_Rhinichthys_osculus_m ..AG.......CG...................T..........................T...........T..A..A.. KU200257.1_Chanodichthys_ilishae ..............A..T........C................................T..............C..... MF972070.1_Siphateles_bicolor_mo ..A.....C..CG.A..T..............T..............C.....T..T...........A..T........ MG570407.1_Notropis_chalybaeus_v ..A..G.....CGTT..T..T........G..T..T.................T.....T........T.TT..A..A.. MG570408.1_Notropis_bifrenatus_v ..A........C..C..T..T...........T..T..T.....T...........G..T........T.TT..G..A.. MG570413.1_Notropis_heterolepis_ ..A.C......C........T..T........T..T.................T..T..T........T.TT..A..A.. MG570416.1_Rhinichthys_obtusus_v ..AG.G.....CGT..GT..T........G..T..T.................T.....T...........T..A..A.. MG570417.1_Rhinichthys_obtusus_v ..AG.G.....CGT..GT..T........G..T..T.................T.....T...........T..A..A.. MG570420.1_Pimephales_notatus_vo ..A.....C..CG.C.....T...........T.....T...........C..T.....T........T.TT..A..A.. MG570443.1_Notropis_hudsonius_is ..GG.T.....C..A..T..T........GC.T..............C...........G..C..T....T...A..A.. MG570444.1_Rhinichthys_atratulus ..AC.......CGTA.....T...........T..T.................T.....T...........T..G..A.. MG570445.1_Rhinichthys_atratulus ..AC.......CGTA.....T...........T..T.................T.....T...........T..G..A.. MG570447.1_Luxilus_cornutus_isol ..A........CG.A..T..T.....C.....T..T.......................T........T.TT..A..A.. MG570449.1_Luxilus_cornutus_isol ..A........CG.A..T..T.....C.....T..T.......................T........T.TT..A..A.. MG570450.1_Pimephales_notatus_is ..A.....C..CG.C.....T...........T.................C..T.....T........T.TT..A..A.. MG570451.1_Notropis_bifrenatus_i ..A........C..C..T..T...........T..T..T.....T...........G..T........T.TT..G..A.. MG570453.1_Exoglossum_maxillingu ..GG.......CG.......T...........T........T...........T.....T..C........T..A..A.. MG570454.1_Pimephales_promelas_i ..A.........G.T..T..T........G..T..T.................T........C.....T.TT..A..A.. MG570455.1_Notropis_atherinoides ..A..C.....CG.A..T..T...........T..T........T.....C........T........T.T...C..... MG570456.1_Notropis_atherinoides ..A..C.....CG.A..T..T........G..T..T........T.....C........T..C.....T.T...C..... MG570457.1_Pimephales_notatus_is ..A.....C..CG.C.....T...........T.....T...........C..T.....T........T.TT..A..A.. MG570458.1_Pimephales_notatus_is ..A.....C..CG.C.....T...........T.....T...........C..T.....T........T.TT..A..A.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..A..T.....CG.C..T..T...........T..T...........C.....T..............T.TT..A..A.. MT364325.1_Hybognathus_amarus_mi ..AG.......CGTT..T..T..T..C..G..T..T.....T..T.....C...................TT..A..A.. MT501368.1_Gila_cypha_isolate_SN ..A.....C..CG.A..T...................................T.....T........A..T........ MT501369.1_Notropis_simus_pecose ..AG.......C..C..T..T........G..T..T.................T.....T........T.TT..A..A.. MT501378.1_Hybognathus_amarus_is ..AG.......CGTT..T..T..T..C..G..T..T.....T..T.....C...................TT..A..A.. MT501385.1_Notropis_jemezanus_vo ..A..G.....CG.A..T..T........G..T..T..............C........T..C.....T.T...C..... MT501391.1_Rhinichthys_osculus_i ..AG.G.....CG...................T....................T.....T..C........T..A..A.. MT667239.1_Rhinichthys_osculus_t ..AG.G.....CG...................T....................T.................T..A..A.. MT667242.1_Luxilus_cornutus_vouc ..A........CG.A..T..T.....C.....T..T.......................T........T.TT..A..A.. MW300340.1_Hybognathus_placitus_ ..AG.G.....CG.T..T..T.....C.....T..T.....T..T..CG.C..T................TT..G..A.. MW300341.1_Hybognathus_placitus_ ..AG.G.....CG.T..T..T.....C.....T..T.....T..T..C..C..T................TT..G..A.. NC_013763.1_Mylocheilus_caurinus ..A........CG.A..............G..T..T.......................T...........T..A..... NC_033926.1_Opsopoeodus_emiliae_ ..A........CG.C..T.....T........T..T........T........TGTT.....C...T.A.TT..A..A.. NC_037008.1_Notropis_chalybaeus_ ..A..G.....CGTT..T..T........G..T..T.................T.....T........T.TT..A..A.. NC_037009.1_Notropis_heterolepis ..A.C......C........T..T........T..T.................T..T..T........T.TT..A..A.. NC_037010.1_Rhinichthys_obtusus_ ..AG.G.....CGT..GT..T........G..T..T.................T.....T...........T..A..A.. NC_037014.1_Notropis_hudsonius_i ..GG.T.....C..A..T..T........GC.T..............C...........G..C..T....T...A..A.. NC_037015.1_Exoglossum_maxilling ..GG.......CG.......T...........T........T...........T.....T..C........T..A..A.. NC_054086.1_Ptychocheilus_lucius ..A.....C..CG.A.....T........G..T.....T..............T..T..T........A..T........ NC_054257.1_Gila_cypha_isolate_S ..A.....C..CG.A..T...................................T.....T........A..T........ NC_054259.1_Gila_nigrescens_isol ..A.....C..CG.A..T..T...........T....................T.....T........A..T........ NC_054260.1_Hybognathus_amarus_i ..AG.......CGTT..T..T..T..C..G..T..T.....T..T.....C...................TT..A..A.. NC_054262.1_Notropis_jemezanus_v ..A........CG.A..T..T........G..T..T..............C........T..C.....T.T...C..... Pimephales_notatus_R2S3_________ ..A........CG.C..T..T.....C.....T..T..T....................T........T.TT..A..A.. Pimephales_tenellus_tenellu_R2S1 ..A.........G.T..T..T........G..T..T..............C..T.....T........T.TT..A..A.. Pimephales_tenellus_parvice_R2S2 ..A.........G.T..T..T........G..T..T..............C..T.....T........T.TT..A..A.. Pimephales_notatus_R1S1_________ ..A........CG.C..T..T.....C.....T..T..T....................T........T.TT..A..A.. MG570452.1_Pimephales_promelas_i ..A.........G.T..T..T........G..T..T.................T........C.....T.TT..A..A.. MG570452.1_Pimephales_promelas_S ..A.........G.T..T..T........G..T..T.................T..............T.TT..A..A.. AB626850.1_Megalobrama_terminali ATCCATCCTAGAATTCGCGCTATGGTATATACACTCTGACCCAAACATGAACCGATTTTTCAAATACCTACTCCTATTCC AP010779.1_Mylocheilus_caurinus_ ...A...T....G..T..A.....A.....G.....C.....G...........G.....T..G...T.....T.G.... AP011215.1_Gila_sp._1460_mitocho G..G..TT.......T..AT....A...........G......T....A.....G..C..T..G.........T....TT AP011263.1_Scardinius_erythropht ...G...T....G..T..AT.G....................T...G.A........C..T......T.G.....G..TT AP011267.1_Algansea_lacustris_mi ...T..TT.......T..A..G.....C........C.....C...........G..C........T...T.G......T AP011268.1_Yuriria_alta_mitochon G.....TT....G..T..A..G..A........T..C.....T.....A........C.....G...T....G....... AP011273.1_Hybognathus_nuchalis_ G.....TT....G..T..A.....A.....G.....C.....C..............C..T.....T.....A....... AP011274.1_Couesius_plumbeus_mit G..A...T.....C.T..AT..........G..T........T.....A..T.....C........T.....T.....TT AP011275.1_Platygobio_gracilis_m ......TT.......T........A..C........C.....C..T..A........C.....G..TT.G..A..C.... AP011277.1_Erimystax_dissimilis_ ...T..T........T..A.....A.................C.....T........C.........T....AT.G.... AP011279.1_Pimephales_promelas_m G..T..TT.......T..C..C..A..C..............C.....A..T..G..C..T.....TT....T..T.... AP011280.1_Clinostomus_elongatus ............G..T...T....A.....G.....C.....C..............C........TT.....T...... AP012079.1_Luxilus_chrysocephalu ......T........T..A..G..A..C........C.....T.....A........C........TT.......G...T AP012080.1_Macrhybopsis_gelida_m ......TT....G..T..A..G..A.....G...........T.....A....A...C........TT....A....... AP012083.1_Notropis_atherinoides ...A...T....G.................G.....C.....T.....A........C.........T....G.....TT AP012084.1_Notropis_baileyi_mito G..T..TT.......T..AT....A.....G...........T.....A........C........TT....G....... AP012087.1_Cyprinella_galactura_ G.....TT....G..T..A..G..A...........A..T..T..T.....T..G..C..T.....TT.......G...T AP012088.1_Hybopsis_lineapunctat G..T..TT.......T.....G..A.................T..T..T........C..T.....T..T..A.....T. AP012090.1_Luxilus_cornutus_mito ......TT....G..T..A..G..A..C........C.....T..T...........C........TT....A..G...T AP012091.1_Lythrurus_ardens_mito ...T..TT.......T..A..G..A...........C.....T..T...........C.........T....G......T AP012092.1_Lythrurus_fumeus_mito ...T..TT....G..T..A..G..............C..T..C..............C........T.....G......T AP012093.1_Lythrurus_lirus_mitoc ...T..TT.......T..A..G..A...........C.....T..T........G..C..T......T....G......T AP012094.1_Lythrurus_umbratilis_ ...T..TT.......T..A..G..A...........C.....T..T...........C.........T....G......T AP012095.1_Macrhybopsis_meeki_mi ...T..TT.......T..A.....A..C.....T........T..T..A....A...C..T..G..TT....A....... AP012097.1_Notropis_bifrenatus_m ...A...T....G..T..A.....A..C.....T.T...T..T.....T........C..T.....TT.GT.A..G..TT AP012098.1_Pimephales_sp._MCZunc ...A...T....G..T..A..G..A.....G...........C.....A........C..T.....TT....T....... AP012100.1_Notropis_telescopus_m ...A..T........T..A.....A..C..G.....C.....C..............C..T.....TT....A....... AP012101.1_Pimephales_notatus_mi ...A...T....G..T..A..G..A.....G...........T.....A........C..T.....T.....T....... AP012102.1_Pimephales_vigilax_mi ...A..TT....G..T..A.....A.................C.....A..T.....C..T.....T.....T......T AP012103.1_Pogonichthys_macrolep G..A...T....G..T..A.....A.....G.....C.....T.....A..T........T......T.....T...... AP012106.1_Richardsonius_balteat ...T...T....G..T..A.....A.....G.....C.....T.....A........C.....G..TT.....T.....T AP012108.1_Notropis_chrosomus_mi ...T..TT.......T..A..G..A.....G...........T...G.......G..C........TT....G....... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...A..TT....G..T..A.....A.................C.....A..T.....C..T.....T.....T......T Pimephales_vigilax_R1S3_________ ...A..TT....G..T..A.....A.................C.....A..T.....C..T.....T.....T......T DQ536429.1_Notropis_stramineus_m G..T...T.G..G..T..A.....A.....G.....C.....C.....A........C..T...........G..G.... JX910141.1_Squaliobarbus_curricu ...A...........T..AT....A..C.....T........T..T..A........C.....G.....C.......... KC351187.1_Squaliobarbus_curricu ...A...........T..AT....A..C.....T........T..T..A........C.....G.....C.......... KT278765.1_Pimephales_promelas_m ...T..TT.......T..C..C..A..C..............C........T.....C........TT....T..T.... KT289925.1_Pimephales_promelas_m G..T..TT.......T..C..C..A..C..............C.....A..T.....C..T.....TT....T..T.... KT424924.1_Rhinichthys_osculus_m G..T...T....G..T..A.....A.....G.....C.....T...C.T.....G..C........TT.....T.....T KU200257.1_Chanodichthys_ilishae G..T..T.....G.....A.....A.....G..............T..........................T....... MF972070.1_Siphateles_bicolor_mo G..A...T....G..T..AT.G..A...........A..T..GT.T..A.....G..C........TT.......G..T. MG570407.1_Notropis_chalybaeus_v G..T..TT....G..T..A.....A.....G...........C..T..A........C........TT....G....... MG570408.1_Notropis_bifrenatus_v ...A...T....G..T..A.....A..C.....T.....T..T.....T........C..T.....TT.GT.A..G..TT MG570413.1_Notropis_heterolepis_ ...T..TT.......T..A..G..A...........C.....C.....T.G......C........TT....A....... MG570416.1_Rhinichthys_obtusus_v ...A...T.......T..A.................C.....C.....T.....G..C.....G..TT.G...T.G.... MG570417.1_Rhinichthys_obtusus_v ...A...T.......T..A.................C.....C.....T.....G..C.....G..TT.G...T.G.... MG570420.1_Pimephales_notatus_vo ...A...T....G..T..A..G..A.....G...........C.....A........C..T.....TT....T....... MG570443.1_Notropis_hudsonius_is G..T...T....G..T..A...........G.....C.....T..............C........T.....G..G...T MG570444.1_Rhinichthys_atratulus ...A...T.......T..A.....A..C........C.....C.....T..T.....C.....G..TT.G...T...... MG570445.1_Rhinichthys_atratulus ...A...T.......T..A.....A..C........C.....C.....T..T.....C.....G..TT.G...T...... MG570447.1_Luxilus_cornutus_isol ......TT....G..T..A..G..A..C........C.....T..............C........TT....A....... MG570449.1_Luxilus_cornutus_isol ......TT....G..T..A..G..A..C........C.....T..............C........TT....A....... MG570450.1_Pimephales_notatus_is ...A...T....G..T..A..G..A.....G...........C.....A........C..T.....TT....T....... MG570451.1_Notropis_bifrenatus_i ...A...T....G..T..A.....A..C.....T.....T..T.....T........C..T.....TT.GT.A..G..TT MG570453.1_Exoglossum_maxillingu ...T..T........T..A.....A.................C.....T........C.........T....AT.G.... MG570454.1_Pimephales_promelas_i G..T..TT.......T..C..C..A..C..............C.....A..T.....C..T.....TT....T..T.... MG570455.1_Notropis_atherinoides ...A...T....G...........A.....G.....C.....T.....A........C.........T....G.....TT MG570456.1_Notropis_atherinoides ...A...T....G.................G.....C.....T.....A........C.........T....G.....TT MG570457.1_Pimephales_notatus_is ...A...T....G..T..A..G..A.....G...........C.....A........C..T.....TT....T....... MG570458.1_Pimephales_notatus_is ...A...T....G..T..A..G..A.....G...........C.....A........C..T.....TT....T....... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...A..TT.......T..A..G..A.................C.....A.....G..C........TT....G....... MT364325.1_Hybognathus_amarus_mi ......TT.......T..A.....A...........C.....T..............C..T...........A..C.... MT501368.1_Gila_cypha_isolate_SN ...A..TT.......T..AT....A...........G......T.T..A.....G..C........T......T....T. MT501369.1_Notropis_simus_pecose ...T..TT....G..T..A.....A..C...........T..C.....A........C........TT.G..G....... MT501378.1_Hybognathus_amarus_is ......TT.......T..A.....A...........C.....T..............C..T...........A..C.... MT501385.1_Notropis_jemezanus_vo .......T....G.......................C.....T.....A.....G..C.........T....G.....TT MT501391.1_Rhinichthys_osculus_i G..A...T.......T..A.....A.....G.....C.....T.....T.G...G..C........TT.....T...... MT667239.1_Rhinichthys_osculus_t G..A...T.......T..A.....A.....G.....C.....T.....T.G...G..C........TT.....T...... MT667242.1_Luxilus_cornutus_vouc ......TT....G..T..A..G..A..C........C.....T..............C........TT....A....... MW300340.1_Hybognathus_placitus_ G..T..TT....G.....A..G..A..C........C.....T..T.....T..G..C..T......T....A..G.... MW300341.1_Hybognathus_placitus_ G..T..TT....G.....A..G..A..C........C.....T........T..G..C..T......T....A..G.... NC_013763.1_Mylocheilus_caurinus ...A...T....G..T..A.....A.....G.....C.....G...........G.....T..G...T.....T.G.... NC_033926.1_Opsopoeodus_emiliae_ .......T....G..T..T.....A...........C..T..C.....A..T.....C........TT....T....... NC_037008.1_Notropis_chalybaeus_ G..T..TT....G..T..A.....A.....G...........C..T..A........C........TT....G....... NC_037009.1_Notropis_heterolepis ...T..TT.......T..A..G..A...........C.....C.....T.G......C........TT....A....... NC_037010.1_Rhinichthys_obtusus_ ...A...T.......T..A.................C.....C.....T.....G..C.....G..TT.G...T.G.... NC_037014.1_Notropis_hudsonius_i G..T...T....G..T..A...........G.....C.....T..............C........T.....G..G...T NC_037015.1_Exoglossum_maxilling ...T..T........T..A.....A.................C.....T........C.........T....AT.G.... NC_054086.1_Ptychocheilus_lucius ...A..TT.......T..AT....A...........G......T....A..T..G..C........T......T....T. NC_054257.1_Gila_cypha_isolate_S ...A..TT.......T..AT....A...........G......T.T..A.....G..C........T......T....T. NC_054259.1_Gila_nigrescens_isol ...A..TT.......T..AT....A.....G.....G......T....A........C..T..G..T......T....TT NC_054260.1_Hybognathus_amarus_i ......TT.......T..A.....A...........CA....T..............C..T...........A..C.... NC_054262.1_Notropis_jemezanus_v .......T....G.......................C.....T.....A.....G..C.........T....G.....TT Pimephales_notatus_R2S3_________ ...T..TT....G..T........A.....G...........T.....A........C..............T......T Pimephales_tenellus_tenellu_R2S1 ......TT.......T..C..C..A..C........A.....C........T.....C..............T..G.... Pimephales_tenellus_parvice_R2S2 ......TT.......T..C..C..A..C........A.....C........T.....C..............T.....T. Pimephales_notatus_R1S1_________ ...T..TT....G..T........A.....G...........T.....A........C..............T......T MG570452.1_Pimephales_promelas_i G..T..TT.......T..C..C..A..C..............C.....A..T.....C..T......T....T..T.... MG570452.1_Pimephales_promelas_S G..T..TT.......T..C..C..A..C..............C.....A..T..G..C..T.....TT....T..T.... AB626850.1_Megalobrama_terminali TGGTAGCCATAATTACCCTGGTCACAGCCAACAATATATTCCAGCTATTCATTGGCTGAGAAGGTGTCGGAATTATATCA AP010779.1_Mylocheilus_caurinus_ .A.................C..T...........C.....T..A.....T...........G..G.....G..C.....C AP011215.1_Gila_sp._1460_mitocho .A.................T...........T........T..AT..........T..G.....A..G........G..T AP011263.1_Scardinius_erythropht .A.....T..G.....A..T..T..C..T.....C..G.....AT................G..A..T..G........C AP011267.1_Algansea_lacustris_mi ...............TT..C..T.....T.....CC........T....T..............A..T...........C AP011268.1_Yuriria_alta_mitochon .A........G....TT..T..T.....T......T....T..A..............G.....A..T..C..C..G..T AP011273.1_Hybognathus_nuchalis_ .A.....A.......TT..T........T......C....T..A........C...........A..T..T........C AP011274.1_Couesius_plumbeus_mit ....T..........T...C........T..T.....G..T..A.....T..............A..T.....C..G..C AP011275.1_Platygobio_gracilis_m .A........G....TT..C........T..T..C..G......T....T...........G..G..T..C..C.....T AP011277.1_Erimystax_dissimilis_ .A.............TT..C..T.....A..............A.....T..C..T..G.....A..T.....C.....C AP011279.1_Pimephales_promelas_m .A.................C..A.....T......T....T..A........C...........A..T..T........T AP011280.1_Clinostomus_elongatus .A...........C.....C..T.....A.....C.....T..A..G..T..C..T..G..G..A........C.....C AP012079.1_Luxilus_chrysocephalu .......T.......TT..T........T..T...T....T..A....................A..T..T........T AP012080.1_Macrhybopsis_gelida_m .......T.......TT..T..T.....T..T...T....T..A.....T..............A..T..C......... AP012083.1_Notropis_atherinoides .A..G..........T...T..T.....A......T....T...........C...........A..T..C..C..G..T AP012084.1_Notropis_baileyi_mito .A.............T...T..T........T...T....T..A....................A..T..T........T AP012087.1_Cyprinella_galactura_ .A..C..T.....C.TT..T.....C..T..T..CT....T..A........C........G..A..T..T......... AP012088.1_Hybopsis_lineapunctat .C............GTT..T..T.....T......T.......A.....T........G.....A..T..T..C...... AP012090.1_Luxilus_cornutus_mito .A.............T...T..T.....T..T...T....T..A.................G..A..T..T..C.....T AP012091.1_Lythrurus_ardens_mito .A...........C.TT..T..T.....T..T..CT....T..A.................G..A..T..C........T AP012092.1_Lythrurus_fumeus_mito .A..G..........T...C..T.....T..T...T....T..AT....T..C...........A..T..C........T AP012093.1_Lythrurus_lirus_mitoc .A...........C.TT..T..T.....T..T...T....T..AT................G..A..T..C........T AP012094.1_Lythrurus_umbratilis_ .A...........C.TT..T..T.....T..T...T....T..A.................G..A..T..C........T AP012095.1_Macrhybopsis_meeki_mi .A.....T.......TT..T..T.....T..T..CC....T..A..............G..G..A..T..C......... AP012097.1_Notropis_bifrenatus_m .A.....T..G....T...T..T.....T......T....T..A....................A..T...........T AP012098.1_Pimephales_sp._MCZunc .A.............TT..C..A.....T......T....T..AT.G..T..............A.....T........T AP012100.1_Notropis_telescopus_m .A............GTT..T..T.....T......T....T..AT....T...........G..G..G..T........T AP012101.1_Pimephales_notatus_mi .A.............TT..C..A.....T......T....T..AT.G..T.....T........A.....T........T AP012102.1_Pimephales_vigilax_mi .A.............TT..T..A.....T......T....T..AT....T.....A.....G..A..T..C........T AP012103.1_Pogonichthys_macrolep .A.................T..T..G........C........A.....T..............G..T..G..C.....C AP012106.1_Richardsonius_balteat .A.............T...C..T.....G..T........T........T.....G..G..G..G........C..G..C AP012108.1_Notropis_chrosomus_mi .............CGTT..T..T........T...T....T..A........C...........A..T.....C.....C AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .A.............TT..T..A.....T......T....T..AT....T.....A.....G..A..T..C........T Pimephales_vigilax_R1S3_________ .A.............TT..T..A.....T......T....T..AT....T.....A.....G..A..T..C........T DQ536429.1_Notropis_stramineus_m .A.....T.....CGTT..T..T.....A.....CT....T..A.....T..............G..A..C.....G..T JX910141.1_Squaliobarbus_curricu .A.....T.......................T..C.....T...........C...........G..A............ KC351187.1_Squaliobarbus_curricu .A.....T.......................T..C.....T...........C...........G..A............ KT278765.1_Pimephales_promelas_m .A..............T..C..A.....T......T....T.......................A..T..T........T KT289925.1_Pimephales_promelas_m .A..............T..C..A.....T......T....T...T.......C...........A..T..T........T KT424924.1_Rhinichthys_osculus_m .A..G..T......GTT..C..T.....A...........T..A.....T..C.....G.....A..T..C..C.....T KU200257.1_Chanodichthys_ilishae .A................................C........A..G.....C...........C..T............ MF972070.1_Siphateles_bicolor_mo .A.................C...........T...T.......AT....T........G.....A..A........G..T MG570407.1_Notropis_chalybaeus_v .A.............T...T..T........T...T....T..AT...................A..T..C........G MG570408.1_Notropis_bifrenatus_v .A.....T..G....T...T..T.....T......T....T..A....................A..T...........T MG570413.1_Notropis_heterolepis_ .A.....T.....C.TT...........T..T...T....T..A.....T..............A..G..T........T MG570416.1_Rhinichthys_obtusus_v .......T...........C..T.....A.....C........A.....T.....T..G..G..A..T.....C..G..C MG570417.1_Rhinichthys_obtusus_v .......T...........C..T.....A.....C........A.....T.....T..G..G..A..T.....C..G..C MG570420.1_Pimephales_notatus_vo .A.............TT..C..A.....T......T....T..AT.G..T..............A.....T........T MG570443.1_Notropis_hudsonius_is .A..G..T.......TT..T..T..C.........C.......A........C..............G..T.....G..T MG570444.1_Rhinichthys_atratulus .A........G........C.....C..G.....C.....T..A.................G..G..T.....C..G..C MG570445.1_Rhinichthys_atratulus .A........G........C.....C..G.....C.....T..A.................G..G..T.....C..G..C MG570447.1_Luxilus_cornutus_isol .A.............T...T..T.....T..T...T....T..A.................G..A..T..T..C.....T MG570449.1_Luxilus_cornutus_isol .A.............T...T..T.....T..T...T....T..A.................G..A..T..T..C.....T MG570450.1_Pimephales_notatus_is .A.............TT..C..A.....T......T....T..AT.G..T..............A.....T........T MG570451.1_Notropis_bifrenatus_i .A.....T..G....T...T..T.....T......T....T..A....................A..T...........T MG570453.1_Exoglossum_maxillingu .A.............TT..C..T.....A..............A.....T..C..T..G.....A..T.....C.....C MG570454.1_Pimephales_promelas_i .A..............T..C..A.....T......T....T...T.......C...........A..T..T........T MG570455.1_Notropis_atherinoides .A..G.....G..C.T...T..T.....A......T....T...........C...........G..T..C..C..G..T MG570456.1_Notropis_atherinoides .A..G..........T...T..T.....A......T....T...........C.....G.....A..T..C..C..G..T MG570457.1_Pimephales_notatus_is .A.............TT..C..A.....T......T....T..AT.G..T..............A.....T........T MG570458.1_Pimephales_notatus_is .A.............TT..C..A.....T......T....T..AT.G..T..............A.....T........T MK421554.1_Parabramis_pekinensis .A.............................................................................. MT333789.1_Notropis_lutipinnis_v .............C.TT..T........T..T..CT....T..A.....T..C.....G..G..A.....T..C.....T MT364325.1_Hybognathus_amarus_mi .A.....A.......TT..T........T......C....T..A........C...........A..T..T.....G..C MT501368.1_Gila_cypha_isolate_SN .A.................T...........T........T..AT.............G.....A..A..G.....G..T MT501369.1_Notropis_simus_pecose .A...........C.TT..T..T.....T..T...T....T..A..............G..G..A..T..C........T MT501378.1_Hybognathus_amarus_is .A.....A.......TT..T........T......C....T..A........C...........A..TA.T.....G..C MT501385.1_Notropis_jemezanus_vo .......T..GG...T...T..T.....A......T....T...T....T..C...........A..T..C........T MT501391.1_Rhinichthys_osculus_i ...............TT..T..T.....A...........T..A.....T..C.....G.....G..T..C..C.....C MT667239.1_Rhinichthys_osculus_t ...............TT..T..T.....A...........T..A.....T..C.....G..G..G..T..C..C.....C MT667242.1_Luxilus_cornutus_vouc .A.............T...T..T.....T..T...T....T..A.................G..A..T..T..C.....T MW300340.1_Hybognathus_placitus_ .A.....A.....C.TT..T..T.....T......C.......A..G.....C...........A..T..T..C..G..C MW300341.1_Hybognathus_placitus_ .A.....A.....C.TT..T..T.....T......C.......A..G.....C........G..A..T..T..C..G..C NC_013763.1_Mylocheilus_caurinus .A.................C..T...........C.....T..A.....T...........G..G.....G..C.....C NC_033926.1_Opsopoeodus_emiliae_ .A.............TT..T..A..C.........T....T..A..............G..G..G..T..T..C.....C NC_037008.1_Notropis_chalybaeus_ .A.............T...T..T........T...T....T..AT...................A..T..C........G NC_037009.1_Notropis_heterolepis .A.....T.....C.TT...........T..T...T....T..A.....T..............A..G..T........T NC_037010.1_Rhinichthys_obtusus_ .......T...........C..T.....A.....C........A.....T.....T..G..G..A..T.....C..G..C NC_037014.1_Notropis_hudsonius_i .A..G..T.......TT..T..T..C.........C.......A........C..............G..T.....G..T NC_037015.1_Exoglossum_maxilling .A.............TT..C..T.....A..............A.....T..C..T..G.....A..T.....C.....C NC_054086.1_Ptychocheilus_lucius .A.................T.....G.....T........T..AT.............G.....A..G..G.....G..T NC_054257.1_Gila_cypha_isolate_S .A.................T...........T........T..AT.............G.....A..A..G.....G..T NC_054259.1_Gila_nigrescens_isol .A.................T..T........T........T..AT.............G.....A..A..G.....G..T NC_054260.1_Hybognathus_amarus_i .A.....A.......TT..T........T......C....T..A........C...........A..T..T.....G..C NC_054262.1_Notropis_jemezanus_v .A.....T..GG...T...T..T.....A......T....T...T....T..............A..T..C........T Pimephales_notatus_R2S3_________ .A............GTT..C..A.....T......T....T..A....................A.....T........T Pimephales_tenellus_tenellu_R2S1 .A.....T.......TT..C..A.....T..T...T....T........T..............A..T..T........T Pimephales_tenellus_parvice_R2S2 .A.....T.......TT..C..A.....T..T...T.............T..............A..T..T........T Pimephales_notatus_R1S1_________ .A............GTT..C..A.....T......T....T..A....................A.....T........T MG570452.1_Pimephales_promelas_i .A..............T..C..A.....T......T....T...T.......C...........A..T..T........T MG570452.1_Pimephales_promelas_S .A.................C..A.....T......T....T..A........C...........A..T..T........T AB626850.1_Megalobrama_terminali TTCCTACTAATCGGATGGTGATACGGACGAGCAGACGCTAACACAGCAGCCCTCCAAGCCGTTATCTACAACCGAGTAGG AP010779.1_Mylocheilus_caurinus_ .....G..C.....C......C................C..T.....G...........A..C..T........T..C.. AP011215.1_Gila_sp._1460_mitocho ..TT.G........C......C.......G........C.....G..G...........T.....T..T.....C..C.. AP011263.1_Scardinius_erythropht ......T.......C..A..GC...................T.................A.....T..T.....C..G.. AP011267.1_Algansea_lacustris_mi ..T.....C..T..G..A...C.T........................AG...T..G..A..A..T........CA.C.. AP011268.1_Yuriria_alta_mitochon ..T.....C..T..C..A...C.T.................T..C...AG......G..A..A.....T.....T..... AP011273.1_Hybognathus_nuchalis_ ..T..G..C..T..C..A...C.T.....G...........T......AG...T.....G..A.....T.....T..... AP011274.1_Couesius_plumbeus_mit ........C.....C..A...C....G..G........C.....G........T.....T..A..T........T..... AP011275.1_Platygobio_gracilis_m ..T.....T.....C......C.T..C........T.....T..G...AG...T.....A..A..T..T.....CA.C.. AP011277.1_Erimystax_dissimilis_ ..T.....T..T..C..A..............C.....C..T..G....G.........A.....T..T.....T..C.. AP011279.1_Pimephales_promelas_m ..TT....T..T..C..A...C.T..G...........C.....C...AG...T..G..A..A..T..T..T..T..G.. AP011280.1_Clinostomus_elongatus .....C..C.....C......C.T..C...........C........G........G.....C..T..T.....T..T.. AP012079.1_Luxilus_chrysocephalu ..T........T..C......C.T..C..G.....T..C.....C...AG......G..T..C..T........T..... AP012080.1_Macrhybopsis_gelida_m ..T........T..T..A...C.T..C.....................AG.........G..CC.T..T.....CA.T.. AP012083.1_Notropis_atherinoides ..TT....C..T..C..A..GC...................T..C...AG.........G..G..T..T.....T..... AP012084.1_Notropis_baileyi_mito ........T..T..C..A...C.T..G..G...........T..C...AG.........A..A..T..T.....T..... AP012087.1_Cyprinella_galactura_ ........C.....C..A..GC.T........G.....C.....C...AGT........A...........T..T..... AP012088.1_Hybopsis_lineapunctat ..T.....C..T..T..A...C.......G..............C....G...A.....A..A..T..T.....T..T.. AP012090.1_Luxilus_cornutus_mito ..T.....C..T..C..A...C....C..G.....T........C...AG......G..T..A..T..T.....C..G.. AP012091.1_Lythrurus_ardens_mito ........C..T..C..A...C.T..C..G..G..T..G..T..C...AG.........A..A..T..T.....T..T.. AP012092.1_Lythrurus_fumeus_mito ..T.....C..T..C......C.T..C.....G..T..C..T..C...AG...T.....A..A..T..T..T..T..... AP012093.1_Lythrurus_lirus_mitoc ........C..T..C......C....C..G..G..T..C.....C...AG.........A..G..T..T.....T..T.. AP012094.1_Lythrurus_umbratilis_ ........C..T..C..A...C.T..C..G..G..T..G..T..C...AG.........A..A..T..T.....T..T.. AP012095.1_Macrhybopsis_meeki_mi ..T........T..T..A...C.T..C..............T......AG...G.....A..CC.T..T.....CA.T.. AP012097.1_Notropis_bifrenatus_m ...T.G..C..T..T..A...C.T..G..G.....T........C...AG......G..A..A..T..T..T..T..... AP012098.1_Pimephales_sp._MCZunc ..T.....T.....C..A...C.T..G........T.....T..C...AG.........A..A...........T..G.. AP012100.1_Notropis_telescopus_m .....T..C..T..C......C....G..G..............C...AG......G..A..A..T..T.....T..... AP012101.1_Pimephales_notatus_mi ..T.....T.....C..A...C.T.................T..C...AG...T.....A..A........T..T..C.. AP012102.1_Pimephales_vigilax_mi ..T.....T..T..C..A...C.T...........T.....T..C...AG.........A..A.....T..T..T..... AP012103.1_Pogonichthys_macrolep ........C.....T..A...C................C.................G........T..T.....T..T.. AP012106.1_Richardsonius_balteat ........C..T..C......C.T..C...........C........G...........T..C..T..T.....C..C.. AP012108.1_Notropis_chrosomus_mi ..T.....C..T..C..A...C.T.....G..............C...AGT..T..G..A..A..T..T.....C..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..T.....T..T..C..A...C.T...........T.....T..C...AG.........A..A.....T..T..T..... Pimephales_vigilax_R1S3_________ ..T.....T..T..C..A...C.T...........T.....T..C...AG.........A..A.....T..T..T..... DQ536429.1_Notropis_stramineus_m ..T.....C..T..C..A...C.T.....T...........T..C...AG...T..G..A..A.....T.....T..... JX910141.1_Squaliobarbus_curricu .....G...........A..G..............T.................T........C...........G..... KC351187.1_Squaliobarbus_curricu ...........T.....A..G..............T.................T........C...........G..... KT278765.1_Pimephales_promelas_m ..TT....T..T..C..A...C....G...........C.....C...AGT..T..G..A..A..T..T..T..T..... KT289925.1_Pimephales_promelas_m ..TT....T..T..C..A...C.T..G...........C.....C...AG...T..G..A..A..T..T..T..T..G.. KT424924.1_Rhinichthys_osculus_m ........C.....C..A...C.T..G........T..C..T.......GT........A........T.....T..T.. KU200257.1_Chanodichthys_ilishae ....................G........G.....T....................G....................... MF972070.1_Siphateles_bicolor_mo ..TT....G.....T..A...C................C........G...........T..C..T..T.....C..G.. MG570407.1_Notropis_chalybaeus_v ..T..G..T.....C..A...C.T.................T..T...AG.........G..A..T..T.....G..... MG570408.1_Notropis_bifrenatus_v ...T.G..C..T..T..A...C.T..G..G.....T........C...AG......G..A..A..T..T..T..T..... MG570413.1_Notropis_heterolepis_ ..T.....C..T..C..A...C.T........G..T.....T..C...AG...T.....A..A..T..T.....T..T.. MG570416.1_Rhinichthys_obtusus_v ........C..T..C......C................C..........G.........A..C..T..T.....T..T.. MG570417.1_Rhinichthys_obtusus_v ........C..T..C......C................C..........G.........A..C..T..T.....T..T.. MG570420.1_Pimephales_notatus_vo ..T.....T.....C..A...C.T..G........T.....T..C...AG.........A..A...........T..G.. MG570443.1_Notropis_hudsonius_is ........C..T..T......C.T..G.....................AG...T..G..A..C..T..T.....TA.C.. MG570444.1_Rhinichthys_atratulus ........C..T..C......C................C.....G....G.........A..C..T..T.....T..T.. MG570445.1_Rhinichthys_atratulus ........C..T..C......C................C.....G....G.........A..C..T..T.....T..T.. MG570447.1_Luxilus_cornutus_isol ..T.....C..T..C..A...C....C..G.....T........C...AG......G..T..A..T..T.....T..G.. MG570449.1_Luxilus_cornutus_isol ..T.....C..T..C..A...C....C..G.....T........C...AG......G..T..A..T..T.....T..G.. MG570450.1_Pimephales_notatus_is ..T.....T.....C..A...C.T..G........T.....T..C...AG.........A..A...........T..G.. MG570451.1_Notropis_bifrenatus_i ...T.G..C..T..T..A...C.T..G..G.....T........C...AG......G..A..A..T..T..T..T..... MG570453.1_Exoglossum_maxillingu ..T.....T..T..C..A..............C.....C..T..G....G.........A.....T..T.....T..C.. MG570454.1_Pimephales_promelas_i ..TT....T..T..C..A...C.T..G...........C.....C...AG...T.....A..A..T..T..T..T..G.. MG570455.1_Notropis_atherinoides ..TT....C..T..C..A..GC...................T..C...AG.........A..G..T..T.....T..... MG570456.1_Notropis_atherinoides ..TT....C..T..C..A..GC...................T..C...AG.........G..G..T..T.....T..... MG570457.1_Pimephales_notatus_is ..T.....T.....C..A...C.T..G........T.....T..C...AG.........A..A...........T..G.. MG570458.1_Pimephales_notatus_is ..T.....T.....C..A...C.T..G........T.....T..C...AG.........A..A...........T..G.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..T..T..C..T..C..A...C.T..G.................C..GAGT..T.....A..A..T..T.....C..G.. MT364325.1_Hybognathus_amarus_mi ..T..G..C..T..C.....GC....G..G..................AG...T.....G..A...........T..G.. MT501368.1_Gila_cypha_isolate_SN ..TT..........C..A...C.......G........C........G...........T.....T........C..C.. MT501369.1_Notropis_simus_pecose ..T.....C..T..C.....GC....G..G........C..T..C...AG.........A..A..T..T.....T..... MT501378.1_Hybognathus_amarus_is ..T..G..C..T..C.....GC....G..G..................AG...T.....G..A...........T..G.. MT501385.1_Notropis_jemezanus_vo ..TT....C..T..C..A..GC...................T..C...AG......G..G..G..T..T..T..T..C.. MT501391.1_Rhinichthys_osculus_i ........C.....C.....GC.T...........T..C..T.......G.........A..C...........T..T.. MT667239.1_Rhinichthys_osculus_t ........C.....C.....GC.T...........T..C..T.......G.........A..C...........T..T.. MT667242.1_Luxilus_cornutus_vouc ..T.....C..T..C..A...C....C..G.....T........C...AG......G..T..A..T..T.....T..G.. MW300340.1_Hybognathus_placitus_ ..T..G..C.....C..A...C.......G........C.....C...AG.........A..A..T..T..T..T..C.. MW300341.1_Hybognathus_placitus_ ..T..G..C.....C..A...C.......G........C.....C...AG.........A..A..T..T..T..T..C.. NC_013763.1_Mylocheilus_caurinus .....G..C.....C......C................C..T.....G...........A..C..T........T..C.. NC_033926.1_Opsopoeodus_emiliae_ ........C.....C..A...C....G...........C.....C...AGT........A..A..T........G..... NC_037008.1_Notropis_chalybaeus_ ..T..G..T.....C..A...C.T.................T..T...AG.........G..A..T..T.....G..... NC_037009.1_Notropis_heterolepis ..T.....C..T..C..A...C.T........G..T.....T..C...AG...T.....A..A..T..T.....T..T.. NC_037010.1_Rhinichthys_obtusus_ ........C..T..C......C................C..........G.........A..C..T..T.....T..T.. NC_037014.1_Notropis_hudsonius_i ........C..T..T......C.T..G.....................AG...T..G..A..C..T..T.....TA.C.. NC_037015.1_Exoglossum_maxilling ..T.....T..T..C..A..............C.....C..T..G....G.........A.....T..T.....T..C.. NC_054086.1_Ptychocheilus_lucius ..TT..........C......C.......G.....T..C.....G..G...........T.....T..T.....C..C.. NC_054257.1_Gila_cypha_isolate_S ..TT..........C..A...C.......G........C........G...........T.....T........C..C.. NC_054259.1_Gila_nigrescens_isol ..TT..........C..A...C.......G........C.....G..G...........T.....T..T.....C..C.. NC_054260.1_Hybognathus_amarus_i ..T..G..C..T..C.....GC....G..G..................AG...T.....G..A...........T..G.. NC_054262.1_Notropis_jemezanus_v ..TT....C..T..C..A..GC..........G........T..C...AG......G..G..G..T..T..T..T..C.. Pimephales_notatus_R2S3_________ ..T.....C.....C......C......................C...AG.........A..A.....T.....C..... Pimephales_tenellus_tenellu_R2S1 ........T.....C..A..GC................C..T..C...AG.........G.....T..T.....T..... Pimephales_tenellus_parvice_R2S2 .....G..T.....C..A...C....G...........C..T..C...AG.........G.....T..T.....T..... Pimephales_notatus_R1S1_________ ..T.....C.....C......C......................C...AG.........A..A.....T.....C..G.. MG570452.1_Pimephales_promelas_i ..TT....T..T..C..A...C.T..G...........C.....C...AG...T..G..A..A..T..T..T..T..G.. MG570452.1_Pimephales_promelas_S ..TT....T..T..C..A...C.T..G...........C.....C...AG...T..G..A..A..T..T..T..T..G.. AB626850.1_Megalobrama_terminali AGACATTGGACTAATCCTAAGCATAGCATGATTCGCAATAAACCTTAACTCCTGAGAAATCCAGCAAATCTTCTTCCTGT AP010779.1_Mylocheilus_caurinus_ ...T.....G......T..GC...G..C..G..T..G..G.....A..T..T.....G..T..A.....T.....TT.A. AP011215.1_Gila_sp._1460_mitocho G..T...........TT..GC......C..G.....G..C.....A..............T..A...........TT.A. AP011263.1_Scardinius_erythropht G...........G...T..GC......C..............T..A.....A...........A...........TT.A. AP011267.1_Algansea_lacustris_mi G..T..C.........T..GC......G.....T.....G..T..A..............T........T..TGCTT.A. AP011268.1_Yuriria_alta_mitochon G..T...........T...GC...G..C.....T..T.....T..A.....T........G.....GG....TGCTT.A. AP011273.1_Hybognathus_nuchalis_ G..T........C..T...GC...G..C.....T..C.....T..A.....T........A..A...G.T..TGCTT.A. AP011274.1_Couesius_plumbeus_mit G..T.....G......A...CT..G..C........T........C..T...........A..A.....T...A..TC.. AP011275.1_Platygobio_gracilis_m C..T.....GT........GC...G..C..............T..G.....T........T..A.....T...GCTT... AP011277.1_Erimystax_dissimilis_ G..T..C.........T.CGCT.....C..............T..A..T........G..T..A.....T....CTT.A. AP011279.1_Pimephales_promelas_m G..T...........T...GCT..G..T........C..G.....A.....T.....G..G..A..G..T..TACTT.A. AP011280.1_Clinostomus_elongatus G..T..C.....T...T..GCT.....C........C........C..T.....G.....T..A.....T.....TT.A. AP012079.1_Luxilus_chrysocephalu ...T......T....T...GC......C.....T..C........A.....T.....G..A..A..GG.T..TGCT..A. AP012080.1_Macrhybopsis_gelida_m T..T.....GT.....T..GC......T.................A.....T..G.....T..A........TGCTT.A. AP012083.1_Notropis_atherinoides ...T.....GT....T...GC......C..G..T..T..G.....C...........G..G..A..GC....TGCTT... AP012084.1_Notropis_baileyi_mito ...T........G..T...GC...G..C.....T..C..G.....A.....T.....G..A..A..GG.G..TGCTT... AP012087.1_Cyprinella_galactura_ G.....C........T...GC......C.....T..C.....TT.A...........G..A.....G..T..TGCT.... AP012088.1_Hybopsis_lineapunctat G..T..C..G.....T...GC...G..C..G..T..T.....T..C.....T........A..A..GG.T..TGC.T... AP012090.1_Luxilus_cornutus_mito G..T......T....T...GC...G..C..G..T..C........A.....T........A..A..GG.T..TGCTT.A. AP012091.1_Lythrurus_ardens_mito ...T..C...T....T...GC...G..C..G..T..C.....T........T..G.....A..A.....T..TGCT.... AP012092.1_Lythrurus_fumeus_mito ...T.....GT........GCT.....C.....T..C.....T........T..G..G..G..A..GC.T..TGCAT.A. AP012093.1_Lythrurus_lirus_mitoc G..T..C..GT....T...GC...G..C..G..T..C.....T........T..G..G..A..A.....T..TGCT.... AP012094.1_Lythrurus_umbratilis_ ...T..C...T....T...GC...G..C..G..T..C.....T........T..G.....A..A.....T..TGCT.... AP012095.1_Macrhybopsis_meeki_mi T..T..C...T.....T..GC......T..............T..A.....T..G.....T..A.........GCTT.A. AP012097.1_Notropis_bifrenatus_m G.....C..GT........GCT..G..C.....T..C.....T..A.....T........A.....GG....TGCAT.A. AP012098.1_Pimephales_sp._MCZunc G..T...........TT..GC...G..C........T..............T........A..A..G..T..TGCTT.A. AP012100.1_Notropis_telescopus_m G..T..C........T...GC...G..C.....T..C.....TT.A..T...........A..A.....T..TGCT.... AP012101.1_Pimephales_notatus_mi G..T...........TT..GC...G..C..G.....T..............T.....G..A..A..G..T..TGCTT.A. AP012102.1_Pimephales_vigilax_mi ...T..C...T....T...GC...G..C........T.....T..A.....A........A..A.....T..TGCTT.A. AP012103.1_Pogonichthys_macrolep ...T..C..G......T..GC......C.....T...........A..T..T.....G.....A.....T...C.TT... AP012106.1_Richardsonius_balteat G..T..C.........T..GCT.....C....................T..T........T..A.....T...C.TT.A. AP012108.1_Notropis_chrosomus_mi G..T..C...T....T...GC...G..C.....T..C........A...........G..G..A..GG....TGCTT.A. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...T..C...T....T...GC...G..C........T.....T..A.....A........A..A.....T..TGCTT.A. Pimephales_vigilax_R1S3_________ ...T..C...T....T...GC...G..C........T.....T..A.....A........A..A.....T..TGCTT.A. DQ536429.1_Notropis_stramineus_m ...T..C........T..GGCT..G..C.....T..T.....T..G.....T..G..G..G..A..GG.T...GCTT... JX910141.1_Squaliobarbus_curricu T...........G...T....T...........T..G.....T....................A..............A. KC351187.1_Squaliobarbus_curricu T...........G...T....T...........T..G.....T....................A..............A. KT278765.1_Pimephales_promelas_m ...T...........T...GCT..G..T........C..G.....A.....T.....G..G..A..G..T..TGCTT.A. KT289925.1_Pimephales_promelas_m G..T...........T...GCT..G..T........C..G.....A.....T.....G..G..A..G..T..TGCTT.A. KT424924.1_Rhinichthys_osculus_m ...T..C.........T.CGCT.....C..............T..A..T..T........T..A.....T....CTT.A. KU200257.1_Chanodichthys_ilishae G.....C.....G..T...............................................A..............A. MF972070.1_Siphateles_bicolor_mo ...T.....C..G..TT..GC......C...........C.....A.....T........T..A...........TT... MG570407.1_Notropis_chalybaeus_v G..T..C..G.....T...GCT.....C.....T..C........A..............A..A..GG.A..TGCTT... MG570408.1_Notropis_bifrenatus_v G.....C..GT........GCT..G..C.....T..C.....T..A.....T........A.....GG....TGCAT.A. MG570413.1_Notropis_heterolepis_ ...T...........T...GCT.....C........C........C.....T........A..A..G..T...GCTT.A. MG570416.1_Rhinichthys_obtusus_v G..T..C.........T.CGCT..G..C..............T..G.....T.....G..T..A.....T....CTT... MG570417.1_Rhinichthys_obtusus_v G..T..C.........T.CGCT..G..C..............T..G.....T.....G..T..A.....T....CTT... MG570420.1_Pimephales_notatus_vo G..T...........TT..GC...G..C........T..............T........A..A..G..T..TGCTT.A. MG570443.1_Notropis_hudsonius_is ...T...............GCT.....T..G..T...G.......A...........G.....A.....T...GCTT.A. MG570444.1_Rhinichthys_atratulus ...T............T.CGCT.....C..............T..G..T..T........T..A.....T....CTT... MG570445.1_Rhinichthys_atratulus ...T............T.CGCT.....C..............T..G..T..T........T..A.....T....CTT... MG570447.1_Luxilus_cornutus_isol G..T......T....T...GC...G..C.....T..C........A.....T........A..A..GG.T..TGCTT.AG MG570449.1_Luxilus_cornutus_isol G..T......T....T...GC...G..C.....T..C........A.....T........A..A..GG.T..TGCTT.AG MG570450.1_Pimephales_notatus_is G..T...........TT..GC...G..C........T..............T........A..A..G..T..TGCTT.A. MG570451.1_Notropis_bifrenatus_i G.....C..GT........GCT..G..C.....T..C.....T..A.....T........A.....GG....TGCAT.A. MG570453.1_Exoglossum_maxillingu G..T..C.........T.CGCT.....C..............T..A..T........G..T..A.....T....CTT.A. MG570454.1_Pimephales_promelas_i G..T...........T...GCT..G..T........C..G.....A.....T.....G..G..A..G..T..TGCTT.A. MG570455.1_Notropis_atherinoides ...T.....GT.G..T...GC......C..G..T..T........C...........G..G..A...C....TGCTT... MG570456.1_Notropis_atherinoides ...T.....GT....T...GC......C..G..T..T..G.....C...........G..G..A..GC....TGCTT... MG570457.1_Pimephales_notatus_is G..T...........TT..GC...G..C........T..............T........A..A..G..T..TGCTT.A. MG570458.1_Pimephales_notatus_is G..T...........TT..GC...G..C........T..............T........A..A..G..T..TGCTT.A. MK421554.1_Parabramis_pekinensis ..............................G................................................. MT333789.1_Notropis_lutipinnis_v .........GT....T...GC...G..C.....T..C........A.....T........G..A..GG....TGCT.... MT364325.1_Hybognathus_amarus_mi G..T........T..T...GC......C.....T..TG....T..A.....T..G.....A..A...G.T..TGCTT.A. MT501368.1_Gila_cypha_isolate_SN G..T...........TT..GC......C..G.....G..C.....A..............T..A...........TT.A. MT501369.1_Notropis_simus_pecose G..T..C..G..G..T..GGC......C.....T..C........A.....T........A..A..GG....TGCTT... MT501378.1_Hybognathus_amarus_is G..T........T..T...GC......C.....T..TG....T..A.....T..G.....A..A...G.T..TGCTT.A. MT501385.1_Notropis_jemezanus_vo ...T.....C..G..T...GC......C.....T..T........C...........G..A.....GC....TGCTT... MT501391.1_Rhinichthys_osculus_i ...T............T.CGC...G..C..............TA.A..T........G..T........T....CTT.A. MT667239.1_Rhinichthys_osculus_t ...T............T.CGC...G..C..............TA.A..T........G..T........T....CTT.A. MT667242.1_Luxilus_cornutus_vouc G..T......T....T...GC...G..C.....T..C........A.....T........A..A..GG.T..TGCTT.AG MW300340.1_Hybognathus_placitus_ G..T.....G.....T...GC...G..C.....T..C.....T..A.....T........A..A...G.T..TGCTT.A. MW300341.1_Hybognathus_placitus_ G..T.....G.....T...GC...G..C.....T..C.....T..A.....T........A..A...G.T..TGCTT.A. NC_013763.1_Mylocheilus_caurinus ...T.....G......T..GC...G..C..G..T..G..G.....A..T..T.....G..T..A.....T.....TT.A. NC_033926.1_Opsopoeodus_emiliae_ ...............T...GC......C........T..C..TT.A.....A........A..A..G..T..TAC.T.A. NC_037008.1_Notropis_chalybaeus_ G..T..C..G.....T...GCT.....C.....T..C........A..............A..A..GG.A..TGCTT... NC_037009.1_Notropis_heterolepis ...T...........T...GCT.....C........C........C.....T........A..A..G..T...GCTT.A. NC_037010.1_Rhinichthys_obtusus_ G..T..C.........T.CGCT..G..C..............T..G.....T.....G..T..A.....T....CTT... NC_037014.1_Notropis_hudsonius_i ...T...............GCT.....T..G..T...G.......A...........G.....A.....T...GCTT.A. NC_037015.1_Exoglossum_maxilling G..T..C.........T.CGCT.....C..............T..A..T........G..T..A.....T....CTT.A. NC_054086.1_Ptychocheilus_lucius ...T...........TT.GGC......C........G..C.....A..T...........T..A...........TT.A. NC_054257.1_Gila_cypha_isolate_S G..T...........TT..GC......C..G.....G..C.....A..............T..A...........TT.A. NC_054259.1_Gila_nigrescens_isol G..T............T..GC......C..G.....G.CC.....A..............T..A...........T..A. NC_054260.1_Hybognathus_amarus_i G..T........T..T...GC......C.....T..TG....T..A.....T..G.....A..A...G.T..TGCTT.A. NC_054262.1_Notropis_jemezanus_v ...T.....C..G..T...GC......C.....T..T........C...........G..A.....GC....TGCTT... Pimephales_notatus_R2S3_________ G..T.....G.....T...GC......C..G.....T........A.....T........A..A..G..T..TGCTT.A. Pimephales_tenellus_tenellu_R2S1 G........G.........GC...G..C........T.....T..A.....T........A..A..GG.T..TGC...A. Pimephales_tenellus_parvice_R2S2 G..................GC...G..C........T.....T..A.....T........A..A..GG.T..TGC...A. Pimephales_notatus_R1S1_________ G..T.....G.....T...GC......C..G.....T........A.....T........A..A..G..T..TGCTT.A. MG570452.1_Pimephales_promelas_i G..T...........T...GCT..G..T........C........A.....T.....G..G..A..G..T..TGCTT.A. MG570452.1_Pimephales_promelas_S G..T...........T...GCT..G..T........C..G.....A.....T........G..A..G..T..TACTT.A. AB626850.1_Megalobrama_terminali CAAAAAACTTCGACATGACAATTCCCCTAATCGGACTAATCCTCGCAGCAACAGGAAAATCGGCCCAATTTGGCCTACAT AP010779.1_Mylocheilus_caurinus_ ....G...........A.........T....T.....T.....T.................A..G.....C.....G..C AP011215.1_Gila_sp._1460_mitocho .......T..T....CA.....C......G.A.....C.....T.......................G..C......... AP011263.1_Scardinius_erythropht ................A.....C..............T................................C......... AP011267.1_Algansea_lacustris_mi .........A.........G..C..A.....T.CG..C.....A......G.......G....................C AP011268.1_Yuriria_alta_mitochon ......G..A..........G.C..A..G..T.C...C.....T.....CG....G..G.................G..C AP011273.1_Hybognathus_nuchalis_ .........AT..T..A..T..C..A..C..T.C......T..T..G...G....G..G........G........T..C AP011274.1_Couesius_plumbeus_mit .....G.....A....A...G.C..............T.....T.......................G..C........C AP011275.1_Platygobio_gracilis_m ......G..A...T..A....CC..AT......C...C.....T..G..GG....G........G..G.....T..G..C AP011277.1_Erimystax_dissimilis_ ......G..C......A....CC...T..........C.....T......G....C..G........G..C.....G..C AP011279.1_Pimephales_promelas_m .......T.AT..T..A...G.A..A..G..T.C...T.....T..G...G....C....................G..C AP011280.1_Clinostomus_elongatus .........C..........C....TT..G.......T.....T........G.....G...........C.....G... AP012079.1_Luxilus_chrysocephalu .........AT.....A....CC..A.....T.C...T.....T.....GG.G..G..G.................G... AP012080.1_Macrhybopsis_gelida_m .........AT..T.......CC..ATCT..T.CT..T.....T.....G.....G.....A.................C AP012083.1_Notropis_atherinoides .........A...........CC..AT..T.T.C...C........G...G....G..G....................C AP012084.1_Notropis_baileyi_mito .G.......A......A....C...A.....T.C...T.....T......G.G........A..T..G...........C AP012087.1_Cyprinella_galactura_ ....G....A...TG......CC..A..GG...CC..C...........CG.......G.................C..C AP012088.1_Hybopsis_lineapunctat ........CA...T..A....CC..A..G..T.C...C.....T....................T........T..G..C AP012090.1_Luxilus_cornutus_mito .........A......A....CC..AT..G.A.C...T.....T.....GG.G..G..G...........C........C AP012091.1_Lythrurus_ardens_mito .........A...........CC..AT....T.C......T.....G...G.......G...........C.....T... AP012092.1_Lythrurus_fumeus_mito .........GTA....A...GCC..AT....T.C...T........G...G....G..G........G........T..C AP012093.1_Lythrurus_lirus_mitoc .........AT.....A....CC..AT....T.C......T.....G...G.......G...........C.....T... AP012094.1_Lythrurus_umbratilis_ .........A...........CC..AT....T.C......T.....G...G.......G...........C.....T... AP012095.1_Macrhybopsis_meeki_mi .........AT.....A....CC..ATCT....CT..C.....T..............G..A.................C AP012097.1_Notropis_bifrenatus_m .........A.........C.CC.....T..T.C...C.....T......G.......G....................C AP012098.1_Pimephales_sp._MCZunc .......T.AT..T..A....CC..AT....T.C...T..T..T..G...G....G..G........G...........C AP012100.1_Notropis_telescopus_m .........A...T..A.....C..A..C..T.C...C..T.....G...G.......G........G........T..C AP012101.1_Pimephales_notatus_mi .......T.AT..T..A....CC..A.....T.C...T..T..T..G...G....G..G........G...........C AP012102.1_Pimephales_vigilax_mi .........AT..T..A..T..C........T.C...T.....T.................A..T..............C AP012103.1_Pogonichthys_macrolep .G..............A..G...........T.....T.....T.................A..G.....C..T...... AP012106.1_Richardsonius_balteat .G........A.....A...C........C.A.....C.....T..........................C.....G... AP012108.1_Notropis_chrosomus_mi .....C...A...............A.....T.C...C.....T..G...G.G.....G....................C AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .........AT..T..A..T..C........T.C...T.....T.................A..T..............C Pimephales_vigilax_R1S3_________ .........AT..T..A..T..C........T.C...T.....T.................A..T..............C DQ536429.1_Notropis_stramineus_m .G....GT.A...........CC..A.....T.C...C.....T..G...G....G..G........G...........C JX910141.1_Squaliobarbus_curricu ..........T..T..A.....C...............................................C......... KC351187.1_Squaliobarbus_curricu ..........T..T..A.....C...............................................C......... KT278765.1_Pimephales_promelas_m .......T.AT..T..A...G.A..A.....T.C...T.....T..G...G....C....................G..C KT289925.1_Pimephales_promelas_m .......T.AT..T..A...G.A..A.....T.C...T..T..T..G...G....C....................G..C KT424924.1_Rhinichthys_osculus_m ....T.G...T.....A....C....T.G..T.....C.....T..C...G.C.....G........G........G..C KU200257.1_Chanodichthys_ilishae ..........T...........C...........T........T..........................C......... MF972070.1_Siphateles_bicolor_mo ..........T.........G.C..............C.....T..........................C......... MG570407.1_Notropis_chalybaeus_v .........A......A....C...A.....T.C...C.....T..G...G.G.....G....................C MG570408.1_Notropis_bifrenatus_v .........A.........C.CC.....T..T.C...C.....T......G.......G....................C MG570413.1_Notropis_heterolepis_ ......C.CA......A....CC..A..G..T.C...T.....T......G..........A.................C MG570416.1_Rhinichthys_obtusus_v .G...........T.......C...TT....T.....C.....T..C...G.T.....G........G.....T.....C MG570417.1_Rhinichthys_obtusus_v .G...........T.......C...TT....T.....C.....T..C...G.T.....G........G.....T.....C MG570420.1_Pimephales_notatus_vo .......T.AT..T..A....CC..AT....T.C...T..T..T..G...G....G..G........G...........C MG570443.1_Notropis_hudsonius_is .........AT..........CC..A...G.T.C...C.....T.....GG.......G..............T.....C MG570444.1_Rhinichthys_atratulus .....GG......T..A....C...TT....T.....C.....T..C...G.T.....G..A.....G.....T..G..C MG570445.1_Rhinichthys_atratulus .....GG......T..A....C...TT....T.....C.....T..C...G.T.....G..A.....G.....T..G..C MG570447.1_Luxilus_cornutus_isol .........A......A....CC..AT....A.C...T.....T.....GG.G..G..G...........C........C MG570449.1_Luxilus_cornutus_isol .........A......A....CC..AT....A.C...T.....T.....GG.G..G..G...........C........C MG570450.1_Pimephales_notatus_is .......T.AT..T..A....CC..AT....T.C...T..T..T..G...G....G..G........G...........C MG570451.1_Notropis_bifrenatus_i .........A.........C.CC.....C..T.C...C.....T......G.......G....................C MG570453.1_Exoglossum_maxillingu ......G..C......A....CC...T..........C.....T......G....C..G........G..C.....G..C MG570454.1_Pimephales_promelas_i .......T.AT..T..A...G.A..A.....T.C...T..T..T..G...G....C....................G..C MG570455.1_Notropis_atherinoides .........A...........CC..AT..T.T.C...C........G...G....G..G....................C MG570456.1_Notropis_atherinoides .........A...........CC..AT..T.T.C...C........G...G....G..G....................C MG570457.1_Pimephales_notatus_is .......T.AT..T..A....CC..AT....T.C...T..T..T..G...G....G..G........G...........C MG570458.1_Pimephales_notatus_is .......T.AT..T..A....CC..AT....T.C...T..T..T..G...G....G..G........G...........C MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .......T.A...............A.....T.C...C.....T......G.G..G..G....................C MT364325.1_Hybognathus_amarus_mi .........AT..T..A..TG.C..A..C..T.C......T..T..G...G....G..G........G...........C MT501368.1_Gila_cypha_isolate_SN .......T..T.....A.....C......G.A.....T.....T.......................G..C......... MT501369.1_Notropis_simus_pecose .........AT.....A..G.CC..G..G..T.CT..C.....T.....GG.......G........G........G..C MT501378.1_Hybognathus_amarus_is .........AT..T..A..TG.C..A..C..T.C......T..T..G...G....G..G........G...........C MT501385.1_Notropis_jemezanus_vo .........A...........CC......T.T.C...C........G...G.......G........G...........C MT501391.1_Rhinichthys_osculus_i ....T.....T.....A....C....T.G..T.....C.....T..C...G.G.....G........G........G..C MT667239.1_Rhinichthys_osculus_t ....T.....T..........C....T.G..T.....C.....T..C...G.G.....G........G........G..C MT667242.1_Luxilus_cornutus_vouc .........A......A....CC..AT....A.C...T.....T.....GG.G..G..G...........C........C MW300340.1_Hybognathus_placitus_ .........A...T..A....CC..A..T..T.C...G..T..T..G...G....G..G........G........G..C MW300341.1_Hybognathus_placitus_ .........A...T..A....CC..A..T..T.C...G..T..T..G...G....G..G........G........G..C NC_013763.1_Mylocheilus_caurinus ....G...........A.........T....T.....T.....T.................A..G.....C.....G..C NC_033926.1_Opsopoeodus_emiliae_ .......T.AT..T..A....CC..A...T.T.C...C.....A..G...G....G..G....................C NC_037008.1_Notropis_chalybaeus_ .........A......A....C...A.....T.C...C.....T..G...G.G.....G....................C NC_037009.1_Notropis_heterolepis ......C.CA......A....CC..A..G..T.C...T.....T......G..........A.................C NC_037010.1_Rhinichthys_obtusus_ .G...........T.......C...TT....T.....C.....T..C...G.T.....G........G.....T.....C NC_037014.1_Notropis_hudsonius_i .........AT..........CC..A...G.T.C...C.....T.....GG.......G..............T.....C NC_037015.1_Exoglossum_maxilling ......G..C......A....CC...T..........C.....T......G....C..G........G..C.....G..C NC_054086.1_Ptychocheilus_lucius .......T..T.....A.....C......G.A.....C.....T.......................G..C......... NC_054257.1_Gila_cypha_isolate_S .......T..T.....A.....C......G.A.....T.....T.......................G..C......... NC_054259.1_Gila_nigrescens_isol .......T..T.....A...G.C......G.A.....C.....T..........................C......... NC_054260.1_Hybognathus_amarus_i .........AT..T..A..TG.C..A..C..T.C......T..T..G...G....G..G........G...........C NC_054262.1_Notropis_jemezanus_v ......G..A...........CC......T.T.C...C........G...G.......G....................C Pimephales_notatus_R2S3_________ .......TCAT..TG.A....CC..AT....T.C...T..T..T..G...G....G..G........G...........C Pimephales_tenellus_tenellu_R2S1 .......T.AT..T..A.....C..AT....T.C...T..T..T..G...G.......G....................C Pimephales_tenellus_parvice_R2S2 .......T.AT..T..A.....C..AT....T.C...T..T..T..G...G.......G....................C Pimephales_notatus_R1S1_________ .......TCAT..TG.A....CC..AT....T.C...T..T..T..G...G....G..G........G........G..C MG570452.1_Pimephales_promelas_i .......T.AT..T..A...G.A..A.....T.C...T..T..T..G...G....C....................G..C MG570452.1_Pimephales_promelas_S .......T.AT..T..A...G.A..A..G..T.C...T.....T..G...G....C....................G..C AB626850.1_Megalobrama_terminali CCCTGACTCCCTTCTGCCATGGAGGGCCCTACGCCAGTATCTGCCCTACTCCATTCCAGCACTATGGTTGTTGCAGGAAT AP010779.1_Mylocheilus_caurinus_ ..G..G.....GG.C.....A...........A........A...........C.......................C.. AP011215.1_Gila_sp._1460_mitocho .....G.......................C..A.....G...........T..C..T.....C...........C..... AP011263.1_Scardinius_erythropht .....G..............A...........A.....T...........T..C....................C..... AP011267.1_Algansea_lacustris_mi ..A.....T..A..A.....A........A........G.....G.....T..C..T........A..G.....T..T.. AP011268.1_Yuriria_alta_mitochon ..A..G..T..A..G.....A........G.....C........A........C..T..............C.....T.. AP011273.1_Hybognathus_nuchalis_ ..A.....T..A..G.....A........G.....G.....C..AT....T..C..A........A..A........T.. AP011274.1_Couesius_plumbeus_mit .....G..............A...........A........A........A..C..T..T..C..A.............. AP011275.1_Platygobio_gracilis_m ..A.....T..A..A.....A........G........G.....G........C..............A........T.. AP011277.1_Erimystax_dissimilis_ ..A.....T..A..A.....A........G..A........A..G.....T..C..A........A..A..C..G..C.. AP011279.1_Pimephales_promelas_m ..A..G..T..G..C.....A........G..............A..G..A..C..T..T..A..A..A..C.....C.. AP011280.1_Clinostomus_elongatus ..G..G..T..A........A.............................T..C..T.....C..A...........T.. AP012079.1_Luxilus_chrysocephalu ..A.....T..A..A.....A........G...........C..A........C...........A..A..A.....C.. AP012080.1_Macrhybopsis_gelida_m ..T.....T..C..A.....A..A.....A..A...........AT.......C..T........A..A........C.. AP012083.1_Notropis_atherinoides ..A.....T..G..C.....A........G.....G..T.....A........C..T...........A.....G..T.. AP012084.1_Notropis_baileyi_mito ..G.....T..A..A.....A........G...........C..A........C..A...........A........T.. AP012087.1_Cyprinella_galactura_ ..A..G.....A..A.....A........G..A.....G.....A........C........C.....G........T.. AP012088.1_Hybopsis_lineapunctat ..A.....T..A..G.....A........G..A...........A........C..T...........C........T.. AP012090.1_Luxilus_cornutus_mito ..A.....T..A..A.....A........G...........C..A........C...........A..G..A.....C.. AP012091.1_Lythrurus_ardens_mito ..A.....T..A..G.....A........G........G.....A..G....................A.....G..T.. AP012092.1_Lythrurus_fumeus_mito ..A.....T..G..C.....A........G........C.....A.....T..C..............A........C.. AP012093.1_Lythrurus_lirus_mitoc ..A.....T..A..A.....A........G........G.....A..G..A..C..............A........T.. AP012094.1_Lythrurus_umbratilis_ ..A.....T..A..G.....A........G........G.....A..G....................A.....G..T.. AP012095.1_Macrhybopsis_meeki_mi ..A.....T..A..G.....A........G..A....................C..T........A..A........... AP012097.1_Notropis_bifrenatus_m ..A.....T..G..A.....A........G..............A.....A.....T..T.....A..A.....G..T.. AP012098.1_Pimephales_sp._MCZunc ..A.....T..G..C.....A........G...........C..A.....G..C..T..T.....A..A........C.. AP012100.1_Notropis_telescopus_m ..A.....T..A..A.....A........G..............A........C..T..T.....A..A..C..G..C.. AP012101.1_Pimephales_notatus_mi ..A.....T..G..C.....A........G...........C..A.....G..C..T..T.....A..A........C.. AP012102.1_Pimephales_vigilax_mi ..A..G..T..A..C.....A........G..A..G.....C..AT....G........T..C..A..A........C.. AP012103.1_Pogonichthys_macrolep .....G.....CG.C.....A........G..A..G..G..G...........C..T....................C.. AP012106.1_Richardsonius_balteat ..G..G.....AG.......A...........A........A...T.......C........C..A...........C.. AP012108.1_Notropis_chrosomus_mi ..A..G..T..A..C.....A........G........C..C..A........C...........A..G.....G..T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..A..G..T..A..C.....A........G..A..G.....C..AT....G........T..C..A..A........C.. Pimephales_vigilax_R1S3_________ ..A..G..T..A..C.....A........G..A..G.....C..AT....G........T..C..A..A........C.. DQ536429.1_Notropis_stramineus_m ..A.....T..A..A.....A........G..A..G........G.....T..C..T.....A..A..A.....G..T.. JX910141.1_Squaliobarbus_curricu ..T..................................................C..T.....C..A..C..C..G..C.. KC351187.1_Squaliobarbus_curricu ..T..................................................C..T.....C..A..C..C..G..C.. KT278765.1_Pimephales_promelas_m ..A..G..T..G..C.....A........G..............A..G..A..C..T..T..A..A..A........C.. KT289925.1_Pimephales_promelas_m ..A..G..T..G..C.....A........G..............A..G..A..C..T..T..A..A..A........C.. KT424924.1_Rhinichthys_osculus_m ..A..G.....A..A.....A........G........G..A..G.....T..C...........A..A..C.....T.. KU200257.1_Chanodichthys_ilishae .........................................C....................C.....C........... MF972070.1_Siphateles_bicolor_mo ..G..G..............A........C..A........A........T..C..T.....C..A........C..... MG570407.1_Notropis_chalybaeus_v ..A.....T..A..C.....A........G...........C..G........C..T.....A..A..A..C.....C.. MG570408.1_Notropis_bifrenatus_v ..A.....T..G..A.....A........G..............A.....A.....T..T.....A..A.....G..T.. MG570413.1_Notropis_heterolepis_ ..A.....T..A..G.....A........G.....C.....C..AT.......C...........A..G........T.. MG570416.1_Rhinichthys_obtusus_v ..A.....T..G..A.....A........G...........A..G.....T..C........C..A..G..C.....T.. MG570417.1_Rhinichthys_obtusus_v ..A.....T..G..A.....A........G...........A..G.....T..C........C..A..G..C.....T.. MG570420.1_Pimephales_notatus_vo ..A.....T..G..C.....A........G...........C..A.....G..C..T..T.....A..A........C.. MG570443.1_Notropis_hudsonius_is ..A.....T..G..G.....A........G........G.....G.....T..C..T..T.....A..A........T.. MG570444.1_Rhinichthys_atratulus ..A.....A..G..A.....A........G...........A..G.....T..C........C..A..A..C..G..T.. MG570445.1_Rhinichthys_atratulus ..A.....A..G..A.....A........G...........A..G.....T..C........C..A..A..C..G..T.. MG570447.1_Luxilus_cornutus_isol ..A.....T..G..A.....A........G...........C..A........C...........A..G..A.....C.. MG570449.1_Luxilus_cornutus_isol ..A.....T..G..A.....A........G...........C..A........C...........A..G..A.....C.. MG570450.1_Pimephales_notatus_is ..A.....T..G..C.....A........G...........C..A.....G..C..T..T.....A..A........C.. MG570451.1_Notropis_bifrenatus_i ..A.....T..G..A.....A........G..............A.....A.....T..T.....A..A.....G..T.. MG570453.1_Exoglossum_maxillingu ..A.....T..A..A.....A........G..A........A..G.....T..C..A........A..A..C..G..C.. MG570454.1_Pimephales_promelas_i ..A..G..T..G..C.....A........G..............A..G..A..C..T..T..A..A..A........C.. MG570455.1_Notropis_atherinoides ..A.....T..G..C.....A........G.....G..T.....A........C..T...........A.....G..T.. MG570456.1_Notropis_atherinoides ..A.....T..G..C.....A........G.....G..T.....A........C..T...........A.....G..T.. MG570457.1_Pimephales_notatus_is ..A.....T..G..C.....A........G...........C..A.....G..C..T..T.....A..A........C.. MG570458.1_Pimephales_notatus_is ..A.....T..G..C.....A........G...........C..A.....G..C..T..T.....A..A........C.. MK421554.1_Parabramis_pekinensis .................................................................A.............. MT333789.1_Notropis_lutipinnis_v ..A.....T..G..C.....A........G...........C..G.....T..C..T..T........A........T.. MT364325.1_Hybognathus_amarus_mi ..A..G..T..A..A.....A........G.....G.....C..G.....T..C..A...........A........T.. MT501368.1_Gila_cypha_isolate_SN .....G..............A........C..A........A........T..C..T.....C..A........C..... MT501369.1_Notropis_simus_pecose ..A.....T..G..C.....A........G...........C..G........C...........A..A.....G..C.. MT501378.1_Hybognathus_amarus_is ..A..G..T..A..A.....A........G.....G.....C..G.....T..C..A...........A........T.. MT501385.1_Notropis_jemezanus_vo ..A.....T..G..C.....A........G.....G..C.....A..G..A..C..G...........G.....G..T.. MT501391.1_Rhinichthys_osculus_i ..A..G.....A..A.....A........G...........A..G.....T..C........C..A..A..C..G..C.. MT667239.1_Rhinichthys_osculus_t ..A..G.....A..A.....A........G...........A..G.....T..C........C..A..A..C..G..C.. MT667242.1_Luxilus_cornutus_vouc ..A.....T..G..A.....A........G...........C..A........C...........A..G..A.....C.. MW300340.1_Hybognathus_placitus_ ..A.....T..A..C.....A........G...........C..AT....T..C..T...........G.....G..T.. MW300341.1_Hybognathus_placitus_ ..A.....T..A..C.....A........G...........C..AT....T..C..T...........G.....G..T.. NC_013763.1_Mylocheilus_caurinus ..G..G.....GG.C.....A...........A........A...........C.......................C.. NC_033926.1_Opsopoeodus_emiliae_ ..A.....T..G........A........G..............AT....T..C..T..T.....A..A........T.. NC_037008.1_Notropis_chalybaeus_ ..A.....T..A..C.....A........G...........C..G........C..T.....A..A..A..C.....C.. NC_037009.1_Notropis_heterolepis ..A.....T..A..G.....A........G.....C.....C..AT.......C...........A..G........T.. NC_037010.1_Rhinichthys_obtusus_ ..A.....T..G..A.....A........G...........A..G.....T..C........C..A..G..C.....T.. NC_037014.1_Notropis_hudsonius_i ..A.....T..G..G.....A........G........G.....G.....T..C..T..T.....A..A........T.. NC_037015.1_Exoglossum_maxilling ..A.....T..A..A.....A........G..A........A..G.....T..C..A........A..A..C..G..C.. NC_054086.1_Ptychocheilus_lucius .....G..............A........C...........A........T..C..T.....C..A........C..... NC_054257.1_Gila_cypha_isolate_S .....G..............A........C..A........A........T..C..T.....C..A........C..... NC_054259.1_Gila_nigrescens_isol .....G..............A........C..A........A...........C..T.....C..A........T..... NC_054260.1_Hybognathus_amarus_i ..A..G..T..A..A.....A........G.....G.....C..G.....T..C..A...........A........T.. NC_054262.1_Notropis_jemezanus_v ..A.....T..G..C.....A........G.....G..C.....A..G..A..C..G...........G.....G..T.. Pimephales_notatus_R2S3_________ ..A.....T..G..C.....A........G...........C..A.....G..C..T........A..A........C.. Pimephales_tenellus_tenellu_R2S1 ..A.....T..G..C.....A........G..............A.....A..C.....T.....A..A.....G..... Pimephales_tenellus_parvice_R2S2 ..A.....T..G..C.....A........G..............A.....A..C.....T..C..A..A.....G..... Pimephales_notatus_R1S1_________ ..A.....T..G..C.....A........G...........C..A.....G..C..T........A..A........C.. MG570452.1_Pimephales_promelas_i ..A..G..T..G..C.....A........G..............A..G..A..C..T..T..A..A..A........C.. MG570452.1_Pimephales_promelas_S ..A..G..T..G..C.....A........G..............A..G..A..C..T..T..A..A..A..C.....C.. AB626850.1_Megalobrama_terminali CTTCCTATTAATTCGCCTCCACCCCCTCATAGAAGACAACAATCTCGCACTGACAATCTGCCTATGCTTGGGGGCACTTA AP010779.1_Mylocheilus_caurinus_ ....T.......C.....T.....A..A......AGT..TG.A..A...T.A.....T..T..T..T..A..T.....A. AP011215.1_Gila_sp._1460_mitocho ......GC..........T........T..G..GA....T..G..G..C..A...............C.A........A. AP011263.1_Scardinius_erythropht .........G..............T.....G..GA.T...C.G..G..G..C.....T..TT.G.....A..C...T.A. AP011267.1_Algansea_lacustris_mi ................T.G........T......A.T..TC.A..A......T..GG.........AC.A.......... AP011268.1_Yuriria_alta_mitochon T...............T.A..T..G.....G........T..AT.A......T..GG....T.......A..A....... AP011273.1_Hybognathus_nuchalis_ .......C..........A.....A..A.....G.....T..G..A.....AT.G.G....T....TC.A.......... AP011274.1_Couesius_plumbeus_mit ...T..............T........T..G..G......G.A..A....GA.....T..T......C.A..A.....A. AP011275.1_Platygobio_gracilis_m ....T.......C...T.G.....G..T.....G.....TG.G..A...T.....G.T..TT.......A..A....... AP011277.1_Erimystax_dissimilis_ ....T....G..C.....T.....A..T.....GA.T..T..A........A...G.T..T..G..TC.A..A...T.A. AP011279.1_Pimephales_promelas_m ...T..T.................AT.G........T....CA..A.....CT..GGT...T....T..A..T....... AP011280.1_Clinostomus_elongatus ....T.G...........T.....A..T.....GA.T..TC.G..G..G..A..G..T.....T..T..A..C.....G. AP012079.1_Luxilus_chrysocephalu .......C..........T..T.....A..G..G..T..T..A..A.....AT..GG....T..........A....... AP012080.1_Macrhybopsis_gelida_m ....T.......C..AT.G.....A..T........T..T..A..A...T.A...GCT.........C.A...T...... AP012083.1_Notropis_atherinoides T.....C..G........A........G..G..GA.......G..G..GT.AT.GGG....T....TC.A..A....... AP012084.1_Notropis_baileyi_mito T..T.....G........A..T..A..A...........T..A..G.....AT..GG....T....T..A..A..C.... AP012087.1_Cyprinella_galactura_ ....T.............T.....G..A.....GA.T..TG....A...T..T.GGG....T....T..A.......... AP012088.1_Hybopsis_lineapunctat .........G..C..T..A........A......A.T.....A..G...T..T...GT...T.....C.A..A....... AP012090.1_Luxilus_cornutus_mito ............C.....A..T..T..G..G...A....T..G..A..G...T..GGT...T.......A..A....... AP012091.1_Lythrurus_ardens_mito .......C..........T.....AT.A.....GA.T..TC.A..A..C..AT...G....T.G..T..A..A..G.... AP012092.1_Lythrurus_fumeus_mito ..................T.....A..A..G...A.T..TC.A.....T...T.GGG....T.G..T..A..A....... AP012093.1_Lythrurus_lirus_mitoc .......C..........T.....AT.A......A.T..TC.A..A.....AT...G....T....T..A..A..G.... AP012094.1_Lythrurus_umbratilis_ .......C..........T.....AT.A.....GA.T..TC.A..A..C..AT...G....T.G..T..A..A..G.... AP012095.1_Macrhybopsis_meeki_mi ....T.......C..AT.G.....A..T........T..T..A..A...T.A...GCT...T....T..A...T...... AP012097.1_Notropis_bifrenatus_m ...T...C.......T..G.....AT.A......A.T..T..A..A.....AT..GG....T....T..A..A....... AP012098.1_Pimephales_sp._MCZunc T.................A.....AT.A........T.....G..A.....AT.GGGT.........C.A..C....... AP012100.1_Notropis_telescopus_m ...T..G.........T.A.....TT.G..G..G........G..G.....AT..GGT........T..A.......... AP012101.1_Pimephales_notatus_mi T..............T..G.....AT.A........T.....G..A.....AT.GGGT.........C.A..C....... AP012102.1_Pimephales_vigilax_mi ...T..............T.....AA.AC.....AG...T..AA.A...T..T..GG....T.....C.A..C.....A. AP012103.1_Pogonichthys_macrolep ....T.G.................G..T......A....TG.A..A..GT.............T.....A..T.....A. AP012106.1_Richardsonius_balteat ....T.G..G........T.....G.........AGT..TG.AT.A..G........T..T..T..T..A..C.....A. AP012108.1_Notropis_chrosomus_mi T.....G...........G.....A..G..G..GA....TG.A..G.....AT.GGG....T....TC.A..A.....A. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...T..............T.....AA.AC.....AG...T..AA.A...T..T..GG....T.....C.A..C.....A. Pimephales_vigilax_R1S3_________ ...T..............T.....AA.AC.....AG...T..AA.A...T..T..GG....T.....C.A..C.....A. DQ536429.1_Notropis_stramineus_m ...T..C..G........A..T..AT.G..G...........G.....C...T..GC..........C.A..A....... JX910141.1_Squaliobarbus_curricu T.....G.....C.....T..........................G..T..T.....T..T..C...C.A..A.....C. KC351187.1_Squaliobarbus_curricu T.....G.....C.....T..........................G..T..T.....T..T..C...C.A..A.....C. KT278765.1_Pimephales_promelas_m ...T..T.................AT.A........T..TGCA..A.....CT..GGT...T....T..A..T....... KT289925.1_Pimephales_promelas_m ...T..T..G..............A..A........T....CA..A.....CT..GGT...T....T..A..T....... KT424924.1_Rhinichthys_osculus_m ....T.............T..T..A..T......A.T..T..G..T.....A..C..T..T..G..T..A..A...T.A. KU200257.1_Chanodichthys_ilishae ..................................A.....GGC..G..G..............C.....A..A....... MF972070.1_Siphateles_bicolor_mo .......C..........T........T......A....TG.G..G..C..A....C..........C.A..A.....A. MG570407.1_Notropis_chalybaeus_v T..T..............A.....AT.A...........T..A..A.....AT..GGT..TT.G........A..C.... MG570408.1_Notropis_bifrenatus_v ...T...C.......T..G.....AT.A......A.T..T..A..A.....AT..GG....T....T..A..A....... MG570413.1_Notropis_heterolepis_ .......C..........G.....G..A..G........T..A..G.TG..AT..GGA...T.....C.A..T..T.... MG570416.1_Rhinichthys_obtusus_v ....T.G..G........T..T..G.....G...A.T..TG.G........A..GGC......C..TC.A..A.....A. MG570417.1_Rhinichthys_obtusus_v ....T.G..G........T..T..G.....G...A.T..TG.G........A..GGC......C..TC.A..A.....A. MG570420.1_Pimephales_notatus_vo T.................A.....AT.A........T.....G..A.....AT.GGGT.........C.A..C....... MG570443.1_Notropis_hudsonius_is ......G.........T.A.....A..T..G...A.....C.G..A.T...A...GGT...T.G..TC.A..A....... MG570444.1_Rhinichthys_atratulus ....T.G...........T..T..G......C....T..TG.G........A...GC......C..TC.A..A.....A. MG570445.1_Rhinichthys_atratulus ....T.G...........T..T..G......C....T..TG.G........A...GC......C..TC.A........A. MG570447.1_Luxilus_cornutus_isol ............C.....A..T..T..A..G...A....T..G..A..G...T..GGT...T.......A..A....... MG570449.1_Luxilus_cornutus_isol ............C.....A..T..T..A..G...A....T..G..A..G...T..GGT...T.......A.......... MG570450.1_Pimephales_notatus_is T.................A.....AT.A........T.....G..A.....AT.GGGT.........C.A..C....... MG570451.1_Notropis_bifrenatus_i ...T...C.......T..G.....AT.A......A.T..T..A..A.....AT..GG....T....T..A..A....... MG570453.1_Exoglossum_maxillingu ....T....G..C.....T.....A..T.....GA.T..T..A........A...G.T..T..G..TC.A..A...T.A. MG570454.1_Pimephales_promelas_i ...T..T..G..............A..A........T....CA..A.....CT..GGT...T....T..A..T....... MG570455.1_Notropis_atherinoides T.....C...........A........G..G..G........G..G..GT.AT.GGG....T....TC.A..A....... MG570456.1_Notropis_atherinoides T.....C..G........A........G..G..GA.......G..G..GT.AT.GGG....T....TC.A..A....... MG570457.1_Pimephales_notatus_is T.................A.....AT.A........T.....G..A.....AT.GGGT.........C.A..C....... MG570458.1_Pimephales_notatus_is T.................A.....AT.A........T.....G..A.....AT.GGGT.........C.A..C....... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v T...T.G...........A.....A..T...C..A....TG.AT.A.....AT..GG....T....T..A..A....... MT364325.1_Hybognathus_amarus_mi .........G........G..T..A..A.....G..T..T..A..A.....AT..GGA........TC.A..A....... MT501368.1_Gila_cypha_isolate_SN .......C..........T........T..G..GA....T..G..G..CT.A...............C.A..A.....A. MT501369.1_Notropis_simus_pecose T.....GC..........G.....AT.A.....GA....TC.A..A.....AT..GGT...........A..A....... MT501378.1_Hybognathus_amarus_is .........G........G..T..A..A.....G..T..T..A..A.....AT..GGA........TC.A..A....... MT501385.1_Notropis_jemezanus_vo T.....C..G........G...........G....G....G.A..G..GT.AT.GGC....T.G..TC............ MT501391.1_Rhinichthys_osculus_i ....T.............T..T..A..T..G..GA....T..G..A.....A.....T........TC.A......T.G. MT667239.1_Rhinichthys_osculus_t ....T.............T..T..A..T..G..GA....T..G..A.....A.....T........TC.A......T.A. MT667242.1_Luxilus_cornutus_vouc ............C.....A..T..T..A..G...A....T..G..A..G...T..GGT...T.......A..A....... MW300340.1_Hybognathus_placitus_ ...T...C..........G..T..A..A.....G........A..A.....AT..GG....T.......A..A....... MW300341.1_Hybognathus_placitus_ ...T...C..........G..T..A..A.....G........A..A.....AT..GG....T.......A..A....... NC_013763.1_Mylocheilus_caurinus ....T.......C.....T.....A..A......AGT..TG.A..A...T.A.....T..T..T..T..A..T.....A. NC_033926.1_Opsopoeodus_emiliae_ T..T...........TT.A......T.A......ACT..TCCCT.A.....AT..TG....T..........T....... NC_037008.1_Notropis_chalybaeus_ T..T..............A.....AT.A...........T..A..A.....AT..GGT..TT.G........A..C.... NC_037009.1_Notropis_heterolepis .......C..........G.....G..A..G........T..A..G.TG..AT..GGA...T.....C.A..T..T.... NC_037010.1_Rhinichthys_obtusus_ ....T.G..G........T..T..G.....G...A.T..TG.G........A..GGC......C..TC.A..A.....A. NC_037014.1_Notropis_hudsonius_i ......G.........T.A.....A..T..G...A.....C.G..A.T...A...GGT...T.G..TC.A..A....... NC_037015.1_Exoglossum_maxilling ....T....G..C.....T.....A..T.....GA.T..T..A........A...G.T..T..G..TC.A..A...T.A. NC_054086.1_Ptychocheilus_lucius .......C..........T........T.....GA....T..G..A..C..A...............C.A..A.....A. NC_054257.1_Gila_cypha_isolate_S .......C..........T........T..G..GA....T..G..G..CT.A...............C.A..A.....A. NC_054259.1_Gila_nigrescens_isol .......C..........T........T.....GA....T..G..G..C..A...............C.A..A.....A. NC_054260.1_Hybognathus_amarus_i .........G........G..T..A..A.....G..T..T..A..A.....AT..GGA........TC.A..A....... NC_054262.1_Notropis_jemezanus_v T.....C..G........G...........G....G....G.A..G..GT.AT.GGC....T.G..TC............ Pimephales_notatus_R2S3_________ T.................A.....A..A......A.T..T..GT.A.....AT..GGT...T....TC.A..C....... Pimephales_tenellus_tenellu_R2S1 ...T..C........T..A.....G..T......A.T..T.CA..G......T..GGT...T.......A..C....... Pimephales_tenellus_parvice_R2S2 ...T..C........T..A.....A..T......A.T..T.CA..A.....AT..GGT...T.......A..C....... Pimephales_notatus_R1S1_________ T.................A.....A..A......A.T..T..GT.A.....AT..GGT...T....TC.A..C....... MG570452.1_Pimephales_promelas_i ...T..T..G..............A..A........T....CA..A.....CT..GGT...T....T..A..T....... MG570452.1_Pimephales_promelas_S ...T..T.................AT.G........T....CA..A.....CT..GGT...T....T..A..T....... AB626850.1_Megalobrama_terminali CCACCCTATTCACAGCCACCTGCGCCCTAACCCAAAATGACATCAAAAAAATCGTAGCTTTCTCAACATCCAGTCAACTA AP010779.1_Mylocheilus_caurinus_ ....TT....T........T........G.....G...........G..G..T..C..A...........A..C..G..C AP011215.1_Gila_sp._1460_mitocho .......G...........T..........................G.....T.................A........T AP011263.1_Scardinius_erythropht ....T.....T...........T.....C.....G.....T.....G.....T.................G........C AP011267.1_Algansea_lacustris_mi .T...T...AT..C.....T.....A..G.................G.....TA.C..............A..C.....T AP011268.1_Yuriria_alta_mitochon .T...T.G.AT.....T..T.....G..C.....G....................C..C...........A........C AP011273.1_Hybognathus_nuchalis_ .T...T...AT..............A..T.....G...........G.....T..C.................C.....T AP011274.1_Couesius_plumbeus_mit ....TT....T........T..............G..C........G.....T.................A..C.....T AP011275.1_Platygobio_gracilis_m .T..TT.G.A...C.....T.....A........G...........G.....T.......................G..T AP011277.1_Erimystax_dissimilis_ .....T...AT...........T.......................G.....T..C..............A..C..G..C AP011279.1_Pimephales_promelas_m .A.......AT.....T..T.....A..T........C........G.....T..C..............A..C..G..T AP011280.1_Clinostomus_elongatus ..........T........T........G.....G........T........T..C..............T..C..G..C AP012079.1_Luxilus_chrysocephalu .T.......AT.....T..T.....A..C.....G...........G.....T..C..............A.....G..G AP012080.1_Macrhybopsis_gelida_m .A..TT....T..T..T..T.....A.....A....................TA.C..............A......... AP012083.1_Notropis_atherinoides .T...T...AT..G.....T.....G..C..T..G....................C..............A.....G..T AP012084.1_Notropis_baileyi_mito .......G.AT..G.....T.....A..C...........T.....G.....T..C..............A..C..G..C AP012087.1_Cyprinella_galactura_ .T.......AT..G.....T..T..G..G..G..............G.....T..T..............A........T AP012088.1_Hybopsis_lineapunctat .T.......AT.....T..T..T..AT...................G.....T..C..............A........T AP012090.1_Luxilus_cornutus_mito .T...T.G.AT.....T..T.....A..T.................G.....T..C..............A.....G... AP012091.1_Lythrurus_ardens_mito .T..T..C.AT........T.....A..T..............T..G.....T..C..............A.....G..T AP012092.1_Lythrurus_fumeus_mito .T.....T.AT.....T..T.....A..T..A........T..T.....G..T..C........G.....A........T AP012093.1_Lythrurus_lirus_mitoc .T.....T.AT........T.....A..T..............T........T..C..............A..C..G..T AP012094.1_Lythrurus_umbratilis_ .T..T..C.AT........T.....A..T..............T..G.....T..C..............A.....G..T AP012095.1_Macrhybopsis_meeki_mi .T..T..G.AT..T.....T.....A.....T........T...........TA.C..............A........T AP012097.1_Notropis_bifrenatus_m .T.......AT.....T..T.....A..T.................G........C..............A........T AP012098.1_Pimephales_sp._MCZunc .T.....G.A......T..T.....A..T..............T..G.....T..C..............T..C..G..T AP012100.1_Notropis_telescopus_m .T.....T.AT........T.....A....................G.....T..C..............A........T AP012101.1_Pimephales_notatus_mi .T.......A......T..T.....A..T..............T..G.....T..C..............T..C..G..T AP012102.1_Pimephales_vigilax_mi .T.......A......T..T..T..A..T...........T.....G.....TA.C..G...........A..C..G..T AP012103.1_Pogonichthys_macrolep .....T.............T..............G..C........G.....T..C..A..T........A........C AP012106.1_Richardsonius_balteat ....T.....T........T.......................T........T..C..............A..C..G..C AP012108.1_Notropis_chrosomus_mi .T.....T.A.........T.....A.....T..G...........G.....T..C..............G..C.....T AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .T.......A......T..T..T..A..T...........T.....G.....TA.C..G...........A..C..G..T Pimephales_vigilax_R1S3_________ .T.......A......T..T..T..A..T...........T.....G.....TA.C..G...........A..C..G..T DQ536429.1_Notropis_stramineus_m .T.......AT..............A....................G.....T..C..A....................T JX910141.1_Squaliobarbus_curricu ....A..G..T.................G.................G.....T........................... KC351187.1_Squaliobarbus_curricu ....A..G..T.................G.................G.....T........................... KT278765.1_Pimephales_promelas_m .A.......AT.....T..T.....A..T........C........G.....T..C..............A..C..G..T KT289925.1_Pimephales_promelas_m .A.......AT.....T..T.....A..T........C........G.....T..C..............A..C..G..T KT424924.1_Rhinichthys_osculus_m ....TT...A......T.............................G.....T..C..C...........A........C KU200257.1_Chanodichthys_ilishae .T..A..........................T........T..T.................................... MF972070.1_Siphateles_bicolor_mo ....TT.......G.....T.................C........G.....T.....C...........A......... MG570407.1_Notropis_chalybaeus_v ....TT...AT..............A....................G.....T..C..............A.....G..T MG570408.1_Notropis_bifrenatus_v .T.......AT.....T..T.....A..T.................G........C..............A........T MG570413.1_Notropis_heterolepis_ .T.....T.AT.....T..T.....A..C.................G.....T..C..C...........A........T MG570416.1_Rhinichthys_obtusus_v .T..TT.G.AT....................T..............G.....T..C..............A.....G..T MG570417.1_Rhinichthys_obtusus_v .T..TT.G.AT....................T..............G.....T..C..............A.....G..T MG570420.1_Pimephales_notatus_vo .T.....G.A......T..T.....A..T..............T..G.....T..C..............T..C..G..T MG570443.1_Notropis_hudsonius_is .T..TT....T.....T.....T..AT.............T.....G.....T..C..............A........T MG570444.1_Rhinichthys_atratulus .T..TT.G.AT..G................................G.....T..C..............A.....G..C MG570445.1_Rhinichthys_atratulus .T..TT.G.AT..G................................G.....T..C..............A.....G..C MG570447.1_Luxilus_cornutus_isol .T...T...AT.....T..T.....A..T.....G...........G.....T..C..............A.....G... MG570449.1_Luxilus_cornutus_isol .T...T...AT.....T..T.....A..T.....G...........G.....T..C..............A.....G... MG570450.1_Pimephales_notatus_is .T.....G.A......T..T.....A..T..............T..G.....T..C..............T..C..G..T MG570451.1_Notropis_bifrenatus_i .T.......AT.....T..T.....A..T.................G........C..............A........T MG570453.1_Exoglossum_maxillingu .....T...AT...........T.......................G.....T..C..............A..C..G..C MG570454.1_Pimephales_promelas_i .A.......AT.....T..T.....A..T........C........G.....T..C..............A..C..G..T MG570455.1_Notropis_atherinoides .T...T.G.AT..G.....T.....G..C..T.......................C..............A.....G..T MG570456.1_Notropis_atherinoides .T...T...AT..G.....T.....G..C..T..G...........G........C..............A.....G..T MG570457.1_Pimephales_notatus_is .T.......A......T..T.....A..T..............T..G.....T..C..............T..C..G..T MG570458.1_Pimephales_notatus_is .T.....G.A......T..T.....A..T..............T..G.....T..C..............T..C..G..T MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .......G.A.........T.....A..C.....G........T..G.....T..C..G...........A..C..G..T MT364325.1_Hybognathus_amarus_mi .T...T...AT..T...........A..T.....G.....T.....G.....T..C.................C..G..T MT501368.1_Gila_cypha_isolate_SN ....TT....T........T..........................G.....T.................A........T MT501369.1_Notropis_simus_pecose .T.......AT........T..T..A..T.................G.....T..C..C...........T..C..G..T MT501378.1_Hybognathus_amarus_is .T...T...AT..T...........A..T.....G.....T.....G.....T..C.................C..G..T MT501385.1_Notropis_jemezanus_vo .T...T.G.AT..G.....T.....G..C..T..G...........G........C..............A.....G..T MT501391.1_Rhinichthys_osculus_i ....TT.G.AT.....T.............................G.....T..C..C...........A.....G..C MT667239.1_Rhinichthys_osculus_t ....TT.G.AT.....T.............................G.....T..C..C...........A.....G..C MT667242.1_Luxilus_cornutus_vouc .T...T...AT.....T..T.....A..T.....G...........G.....T..C..............A.....G... MW300340.1_Hybognathus_placitus_ .......C.A...............A..C.....G.....T.....G..G..T..C..............T..C.....T MW300341.1_Hybognathus_placitus_ .......C.A...............A..C.....G.....T.....G..G..T..C..............T..C.....T NC_013763.1_Mylocheilus_caurinus ....TT....T........T........G.....G...........G..G..T..C..A...........A..C..G..C NC_033926.1_Opsopoeodus_emiliae_ .........AT.....T..T.....A..T.................G......A.C..C...........A......... NC_037008.1_Notropis_chalybaeus_ ....TT...AT..............A....................G.....T..C..............A.....G..T NC_037009.1_Notropis_heterolepis .T.....T.AT.....T..T.....A..C.................G.....T..C..C...........A........T NC_037010.1_Rhinichthys_obtusus_ .T..TT.G.AT....................T..............G.....T..C..............A.....G..T NC_037014.1_Notropis_hudsonius_i .T..TT....T.....T.....T..AT.............T.....G.....T..C..............A........T NC_037015.1_Exoglossum_maxilling .....T...AT...........T.......................G.....T..C..............A..C..G..C NC_054086.1_Ptychocheilus_lucius .....T....T........T..........................G.....T.................A........C NC_054257.1_Gila_cypha_isolate_S ....TT....T........T..........................G.....T.................A........T NC_054259.1_Gila_nigrescens_isol ....TT.............T..........................G.......................A........T NC_054260.1_Hybognathus_amarus_i .T...T...AT..T...........A..T.....G.....T.....G.....T..C.................C..G..T NC_054262.1_Notropis_jemezanus_v .T...T.G.AT..G.....T.....G..C..T..G...........G........C..............A.....G..T Pimephales_notatus_R2S3_________ .T.......A......T..T.....A..C..............T..G.....T..C..............A..C..G..T Pimephales_tenellus_tenellu_R2S1 .T.......AT.....T..T.....G..T........C..T.....G.....T..C..............A..C..G..T Pimephales_tenellus_parvice_R2S2 .T.......AT.....T..T.....A..T...........T.....G.....T..C..............A..C..G..T Pimephales_notatus_R1S1_________ .T.......A......T..T.....A..C..............T..G.....T..C..............A..C..G..T MG570452.1_Pimephales_promelas_i .A.......AT.....T..T.....A..T........C........G.....T..C..............A..C..G..T MG570452.1_Pimephales_promelas_S .A.......AT.....T..T.....A..T........C........G.....T..C..............A..C..G..T AB626850.1_Megalobrama_terminali GGCCTGATAATGGTTACAATTGGACTAAATCAACCACAACTAGCGTTCCTCCACATTTGCACACACGCATTCTTCAAGGC AP010779.1_Mylocheilus_caurinus_ ..GT.A.....A..C..C...........C..............A..T..T..T.....T........G.....T..A.. AP011215.1_Gila_sp._1460_mitocho ..G..A...........G.....GT..........G...........T..T..T.....T........G........... AP011263.1_Scardinius_erythropht .....A........A........C..G.....G...........A.....T..T.....T.................... AP011267.1_Algansea_lacustris_mi ..A..A..G..A..A..C..C..GT....C..............A...A....T..C..T..T...........T..A.. AP011268.1_Yuriria_alta_mitochon ..A..A.....A.....C...........C.........T....A........T..C....................... AP011273.1_Hybognathus_nuchalis_ ..G..T.....A..C..............C..G........G..A........T..C..T.................... AP011274.1_Couesius_plumbeus_mit ..GT.A..G..A...........G..G..C.........T....A..T..T..T........C................. AP011275.1_Platygobio_gracilis_m ..AT.A.....A.....G...........C..............A.....T.....C..T..G.....G........... AP011277.1_Erimystax_dissimilis_ ..AT.A.........G........T....C..G......T....A.....T..T..C..T........G........... AP011279.1_Pimephales_promelas_m ..A..C........G.........T....C.........T....A..T..T..T.................T.....A.. AP011280.1_Clinostomus_elongatus ..G..A......................................A..T..T..T.....T..............T..A.. AP012079.1_Luxilus_chrysocephalu ..G..A........C...........G..C..G.....G.....A..T.....T..C..T.................A.. AP012080.1_Macrhybopsis_gelida_m ..AT.A.....A............T....C...........T..A.....T..T..C..T..............T..... AP012083.1_Notropis_atherinoides ..GT....G.....C..C..C.....C.................A...........C...........G........... AP012084.1_Notropis_baileyi_mito ..A..T........C.....C..GT..............T....A..T.....T...........T........T..A.. AP012087.1_Cyprinella_galactura_ .....T..G..A.....G.....G..T..C..G......T....A.....T..T..............T........A.. AP012088.1_Hybopsis_lineapunctat ..G..C.....A..C..C........G..C........GT.G..A..T..T..T.....T.................... AP012090.1_Luxilus_cornutus_mito ..G..A.....A..C...........G..C........G.....A...........C..............T........ AP012091.1_Lythrurus_ardens_mito ..A..C........C..C..C..................T.............T..C........T...........A.. AP012092.1_Lythrurus_fumeus_mito ..G..T..G..A..C..T.....................T....A........T..C.....G........T.....A.. AP012093.1_Lythrurus_lirus_mitoc ..G..T.....A..C..C..C..................T....A........T..C........T...........A.. AP012094.1_Lythrurus_umbratilis_ ..A..C........C..C..C...........G......T.............T..C........T...........A.. AP012095.1_Macrhybopsis_meeki_mi ..AT.A..G..A...........G.....C...........T..A.....T..T..C..T.................... AP012097.1_Notropis_bifrenatus_m ..A..T.....A.................C........GT.G..A.....A..T..C..T..G.....C........A.. AP012098.1_Pimephales_sp._MCZunc ..A..T.....A..C........C.....C..............A..T.................T.....T.....A.. AP012100.1_Notropis_telescopus_m .....C........C........G.....C..G......T....A.....T........T..G................. AP012101.1_Pimephales_notatus_mi ..A..T.....A..C.....C..C.....C..............A..T.................T.....T.....A.. AP012102.1_Pimephales_vigilax_mi ..A..T..G..A..C........GT....C.....G........A..T.....T.....T..G...........T..A.. AP012103.1_Pogonichthys_macrolep ..A..A.....A..........A......C..............A.....T..T..C..T..............T..A.. AP012106.1_Richardsonius_balteat ..AT.A.......................C..G..G..G.....A..T..T..T.....T..G.....G.....T..A.. AP012108.1_Notropis_chrosomus_mi ..A..T..G..A........C..G..G..C.........T....A.....T..T.....T..............T..A.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..A..T..G..A..C........GT....C.....G........A..T.....T.....T..G...........T..A.. Pimephales_vigilax_R1S3_________ ..A..T..G..A..C........GT....C.....G........A..T.....T.....T..G...........T..A.. DQ536429.1_Notropis_stramineus_m ..A..C..G.....G..C..C........C.........T....A..T..T..T.......................... JX910141.1_Squaliobarbus_curricu ..A..T.....A..C.........T....C..............A.............................T..A.. KC351187.1_Squaliobarbus_curricu ..A..T.....A..C.........T....C..............A.............................T..A.. KT278765.1_Pimephales_promelas_m ..A..C........A.........T....C.....G..GT....A..T..T..T.................T.....A.. KT289925.1_Pimephales_promelas_m ..A..C........A.........T....C........GT....A..T..T..T.................T.....A.. KT424924.1_Rhinichthys_osculus_m ..A..A.....A...G.......C.....C..G..G...T....A..T..T..T..C....................... KU200257.1_Chanodichthys_ilishae ...........A...........GT....C..............A...........C........T...........A.. MF972070.1_Siphateles_bicolor_mo ..A..A.....A...........G..G.....G...........A..T..T..T........C.....G.....T..A.. MG570407.1_Notropis_chalybaeus_v ..A..T........C.......................G.....A..T..T..T.....T..G..T........T..A.. MG570408.1_Notropis_bifrenatus_v ..A..T.....A.................C........GT.G..A.....A..T..C..T..G.....T........A.. MG570413.1_Notropis_heterolepis_ ..A..A..............C........C.........T....A..T........C....................... MG570416.1_Rhinichthys_obtusus_v ..GT.A.....A...G.T...........C..............A..T..T..T.....T..C................. MG570417.1_Rhinichthys_obtusus_v ..GT.A.....A...G.T...........C..............A..T..T..T.....T..C................. MG570420.1_Pimephales_notatus_vo ..A..T.....A..C........C.....C..............A..T.................T.....T.....A.. MG570443.1_Notropis_hudsonius_is ..A..A..G..A.....G..C..G.....C..G........G..A........T..C..T.................... MG570444.1_Rhinichthys_atratulus ..GT.A..G..A...G.T...........C..G...........A..T.....T.....T..C................. MG570445.1_Rhinichthys_atratulus ..GT.A..G..A...G.T...........C..G...........A..T.....T.....T..C................. MG570447.1_Luxilus_cornutus_isol ..G..A........C..G........G..C.....T..G.....A...........C..............T........ MG570449.1_Luxilus_cornutus_isol ..G..A........C..G........G..C.....T..G.....A...........C..............T........ MG570450.1_Pimephales_notatus_is ..A..T.....A..C........C.....C..............A..T.................T.....T.....A.. MG570451.1_Notropis_bifrenatus_i ..A..T.....A.................C........GT.G..A.....A..T..C..T..G.....T........A.. MG570453.1_Exoglossum_maxillingu ..AT.A.........G........T....C..G......T....A.....T..T..C..T........G........... MG570454.1_Pimephales_promelas_i ..A..C........A.........T....C........GT....A..T..T..T.................T.....A.. MG570455.1_Notropis_atherinoides ..GT....G.....C..C..C.....C.................A..T........C...........G........... MG570456.1_Notropis_atherinoides ..GT....G.....C..C..C.....C.................A...........C...........G........... MG570457.1_Pimephales_notatus_is ..A..T.....A...........C.....C..............A..T.................T.....T.....A.. MG570458.1_Pimephales_notatus_is ..A..T.....A..C........C.....C..............A..T.................T.....T.....A.. MK421554.1_Parabramis_pekinensis .................................................................T.............. MT333789.1_Notropis_lutipinnis_v ..A..T.....A..C........GT.G..C.........T....A.....T..T.....T..C................. MT364325.1_Hybognathus_amarus_mi ..G..C.....A..C.....C........C..G........G..A.....T..T..C..T.................... MT501368.1_Gila_cypha_isolate_SN ..A..A.....A...........G....................A..T..T..T.....T........G........... MT501369.1_Notropis_simus_pecose ..A..T.....A..C..............C...........G..A........T..C..T........G.....T..A.. MT501378.1_Hybognathus_amarus_is ..G..C.....A..C.....C........C..G........G..A.....T..T..C..T.................... MT501385.1_Notropis_jemezanus_vo ..G.....G..A..C..C..C.....C.................A...........C...........G........... MT501391.1_Rhinichthys_osculus_i ..A..A.........G.G........C..C..G...........A..T..T..T..C...........G........... MT667239.1_Rhinichthys_osculus_t ..A..A.........G.G........C..C..G...........A..T..T..T..C...........G........... MT667242.1_Luxilus_cornutus_vouc ..G..A........C..G........G..C.....T..G.....A...........C..............T........ MW300340.1_Hybognathus_placitus_ ..A..T........C..............C........G.....A........T..C..T.................... MW300341.1_Hybognathus_placitus_ ..A..T........C..............C........G.....A........T..C..T.................... NC_013763.1_Mylocheilus_caurinus ..GT.A.....A..C..C...........C..............A..T..T..T.....T........G.....T..A.. NC_033926.1_Opsopoeodus_emiliae_ ..A..T.....A..C........................T....A........T.....T...........T........ NC_037008.1_Notropis_chalybaeus_ ..A..T........C.......................G.....A..T..T..T.....T..G..T........T..A.. NC_037009.1_Notropis_heterolepis ..A..A..............C........C.........T....A..T........C....................... NC_037010.1_Rhinichthys_obtusus_ ..GT.A.....A...G.T...........C..............A..T..T..T.....T..C................. NC_037014.1_Notropis_hudsonius_i ..A..A..G..A.....G..C..G.....C..G........G..A........T..C..T.................... NC_037015.1_Exoglossum_maxilling ..AT.A.........G........T....C..G......T....A.....T..T..C..T........G........... NC_054086.1_Ptychocheilus_lucius ..A..A...........G.....G....................A..T..T..T.....T..............T..A.. NC_054257.1_Gila_cypha_isolate_S ..A..A.....A...........G....................A..T..T..T.....T........G........... NC_054259.1_Gila_nigrescens_isol ..G..A...........G..C..GT....C..............A..T..T........T.................A.. NC_054260.1_Hybognathus_amarus_i ..G..C.....A..C.....C........C..G........G..A.....T..T..C..T.................... NC_054262.1_Notropis_jemezanus_v ..G.....G.....C..C..C.....C.................A...........C...........G........... Pimephales_notatus_R2S3_________ ..A..T.....A..C........C.....C..G..G........A..........................T.....A.. Pimephales_tenellus_tenellu_R2S1 ..A..T..G...............T....C..............A..T.....T.....T...........T........ Pimephales_tenellus_parvice_R2S2 ..A..T..G...............T....C..............A..T.....T.....T.................... Pimephales_notatus_R1S1_________ ..A..T.....A..C........C........G..G........A..........................T.....A.. MG570452.1_Pimephales_promelas_i ..A..C........A.........T....C........GT....A..T..T..T.................T.....A.. MG570452.1_Pimephales_promelas_S ..A..C........G.........T....C.........T....A..T..T..T.................T.....A.. AB626850.1_Megalobrama_terminali TATACTATTCTTATGCTCCGGATCAATTATTCACAGCCTAAACGACGAACAAGACATCCGAAAAATAGGAGGTCTTCATA AP010779.1_Mylocheilus_caurinus_ ...G..C...C.G..T..A.....T.................T..T.....G..T..T........G..C..C....... AP011215.1_Gila_sp._1460_mitocho C...T.G.....G.....G....................G..T.....G..G..T..T...........G..A..C.... AP011263.1_Scardinius_erythropht C.....C...C.............T..............C..T.....G..G..T..T..G...........C.....C. AP011267.1_Algansea_lacustris_mi C..G..T...C.C........G..C.....C........G..T..T.....G.....T.....G..G.....C..C..C. AP011268.1_Yuriria_alta_mitochon ...G..C...C.T.....T........C..C..T..T..G........G.....T..T.....G..G..T.....C..C. AP011273.1_Hybognathus_nuchalis_ C.....C...C.T...........C.................T.....G........T..G..G..G..C..C..C..C. AP011274.1_Couesius_plumbeus_mit C..G..C...C.G...G....G..T........T........T.G.........T...........G..G..C....... AP011275.1_Platygobio_gracilis_m C.....C...C.C.....T..G..G..C.....T...T.G..T.....G........T..G.....G..G..C..C.... AP011277.1_Erimystax_dissimilis_ C..G..C...C.............T..C.....T........T..T........T..T....................C. AP011279.1_Pimephales_promelas_m C..G..C..TC.T.....G..G..T..C.....T.....T..T..T........T..T..G........G.....C..C. AP011280.1_Clinostomus_elongatus C..G..T...C.G.....T.....T...........T..T..T..T..G.....T..T..G.....G..C..C.....C. AP012079.1_Luxilus_chrysocephalu ...G..C...C.T........G..T.....C..T.....G..T..T...........T.....G.....C..C..C.... AP012080.1_Macrhybopsis_gelida_m A.....T...C.T...........T.................T..T..G........T...........G..G..C.... AP012083.1_Notropis_atherinoides ......C...C.T.....A.....T........T.....G..T..T...........T..G..G..G..T..C..C..C. AP012084.1_Notropis_baileyi_mito ......C...C.T.....A..G..T..C..............T..T..G.....T..T..G........C..C..C..C. AP012087.1_Cyprinella_galactura_ ......T...C.T.....A..G..T.................T..T..G..G.....T..G...........C....... AP012088.1_Hybopsis_lineapunctat C..G..C...C.T.....A..G..T.....C..T.......G...T.....G..T..............T..C..C..C. AP012090.1_Luxilus_cornutus_mito ...G..C...C.T.....T.....T..C.....T.....G..T..T...........T........G..C..C..C.... AP012091.1_Lythrurus_ardens_mito ......T...C.T.....G..G..T........T........T..T..G.....T..T.....G..G..C..C..C..C. AP012092.1_Lythrurus_fumeus_mito C..G..T...C..........G..T..............G..T..T..G........T..G..G..G..T..C..CA.C. AP012093.1_Lythrurus_lirus_mitoc ......T...C.T.....T..G..T.................T..T..G.....T..T..T..G..G..C..C..C..C. AP012094.1_Lythrurus_umbratilis_ ......T...C.T.....G..G..T........T........T..T..G.....T..T.....G..G..C..C..C..C. AP012095.1_Macrhybopsis_meeki_mi C.....T...C.C...........T........T........T..T..G.....T..T........G.....C..C.... AP012097.1_Notropis_bifrenatus_m ......T...C.T........G..C........T........T..T...........T...........C..C.....C. AP012098.1_Pimephales_sp._MCZunc ......C..TC.T.....A.....T.................T..T..G..G..T..T...........C.......... AP012100.1_Notropis_telescopus_m C.....C...C.T.....G.....T........T...........T..G.....T..T...........T..C..C..C. AP012101.1_Pimephales_notatus_mi ......C..TC.T.....A.....T.................T..T..G..G..T..T...........C.......... AP012102.1_Pimephales_vigilax_mi ......C..TC.T..T..A.....T........T........T..T...........T...........C.......... AP012103.1_Pogonichthys_macrolep C.....T...C.G.....G...G.T.................T..T...........T...........C..C....... AP012106.1_Richardsonius_balteat ......C...C.G........G..T........T........T.....G..G.....T..G........G.....C..C. AP012108.1_Notropis_chrosomus_mi ......C...C.T.....A..G........C..T..T.....T..T.....G........T..G.....C..C..C.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ......C..TC.T..T..A.....T........T........T..T...........T...........C.......... Pimephales_vigilax_R1S3_________ ......C..TC.T..T..A.....T........T........T..T...........T...........C.......... DQ536429.1_Notropis_stramineus_m C.....T...C.T.....A..T..T..............T..T..T..G..G.....T.....G..G..C..C..C..C. JX910141.1_Squaliobarbus_curricu C...T.......G........G.....C..C..............T...........T.................C..C. KC351187.1_Squaliobarbus_curricu C...T.......G........G.....C..C..............T...........T.................C..C. KT278765.1_Pimephales_promelas_m C..G..T..TC.T.....A..G..T..C.....T.....T..T..T........T..T..G..G..G..G..C..C..C. KT289925.1_Pimephales_promelas_m C..G..T..TC.T.....G..G..T..C.....T.....T..T..T..G.....T..T..G........G.....C..C. KT424924.1_Rhinichthys_osculus_m C.....T...C.G........G..C.....C....A......T..T..G........T..C...........C.....C. KU200257.1_Chanodichthys_ilishae ...G......C.G.............................T..T..........................C.....C. MF972070.1_Siphateles_bicolor_mo C...T.............T..G..........................G........T..............A..C.... MG570407.1_Notropis_chalybaeus_v ......C...C.T.....G.....T.....C..T........T..T...........T..G.....G..C..C..C.... MG570408.1_Notropis_bifrenatus_v ......T...C.T........G..C........T........T..T...........T...........C..C.....C. MG570413.1_Notropis_heterolepis_ C..G..C...C.T...........T.............................T..T.....G.....T..C..C.... MG570416.1_Rhinichthys_obtusus_v C.....G...C.C........G..T........T..T..C..T..T..G.....T..T..G.....G..G..C.....C. MG570417.1_Rhinichthys_obtusus_v C.....G...C.C........G..T........T..T..C..T..T..G.....T..T..G.....G..G..C.....C. MG570420.1_Pimephales_notatus_vo ......C..TC.T.....A.....T.................T..T..G..G..T..T...........C.......... MG570443.1_Notropis_hudsonius_is ......C...C.T.....T.....T........T........T..T........T..T.....G.....C..C..C.... MG570444.1_Rhinichthys_atratulus C.....C...C.C........G..T........T.....G..T.....G.....T..T........G..G..C.....C. MG570445.1_Rhinichthys_atratulus C.....C...C.C........G..T........T.....G..T.....G.....T..T........G..G..C.....C. MG570447.1_Luxilus_cornutus_isol ...G..C...C.T.....T.....T..C.....T.....G..T..T...........T........G..C..C..C.... MG570449.1_Luxilus_cornutus_isol ...G..C...C.T.....T.....T..C.....T.....G..T..T...........T........G..C..C..C.... MG570450.1_Pimephales_notatus_is ......C..TC.T.....A.....T.................T..T..G..G..T..T...........C.......... MG570451.1_Notropis_bifrenatus_i ......T...C.T........G..C........T........T..T...........T...........C..C.....C. MG570453.1_Exoglossum_maxillingu C..G..C...C.............T..C.....T........T..T........T..T....................C. MG570454.1_Pimephales_promelas_i C..G..T..TC.T.....G..G..T..C.....T.....T..T..T..G.....T..T..G........G.....C..C. MG570455.1_Notropis_atherinoides ......C...C.T.....A..G..T........T.....G..T..T...........T..G..G..G..T..C..C..C. MG570456.1_Notropis_atherinoides ......C...C.T.....A.....T........T.....G..T..T...........T..G..G..G..T..C..C..C. MG570457.1_Pimephales_notatus_is ......C..TC.T.....A.....T.................T..T..G..G..T..T...........C.......... MG570458.1_Pimephales_notatus_is ......C..TC.T.....A.....T.................T..T..G..G..T..T...........C.......... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v C.....C...C.T..T..G..G..T.....C....................G.....T..G.....G..T..C..C..C. MT364325.1_Hybognathus_amarus_mi C.....C...C.T...........T.................T..............T.....G..G..C..C..C..C. MT501368.1_Gila_cypha_isolate_SN ....T.............G..G....................T..T..G.....T..T.....G.....G..A..C.... MT501369.1_Notropis_simus_pecose ...G..C...C.T.....G..G..T...........T..G..............T..T..G..G........C..C..C. MT501378.1_Hybognathus_amarus_is C.....C...C.T...........T.................T..............T.....G..G..C..C..C..C. MT501385.1_Notropis_jemezanus_vo ......C...C.T.....G..G..T.....C..T.....G..T..T..G........T..G.....G..T..C..C.... MT501391.1_Rhinichthys_osculus_i C..G..T...C.G........G..T.....C...........T...........T..T..C..G..G..G..C.....C. MT667239.1_Rhinichthys_osculus_t C..G..T...C.G.....T..G..T.....C...........T...........T..T..C..G..G..G..C.....C. MT667242.1_Luxilus_cornutus_vouc ...G..C...C.T.....T.....T..C.....T.....G..T..T...........T........G..C..C..C.... MW300340.1_Hybognathus_placitus_ C..G..C...C.T.....T..G..G..C..............T..T..G........T..G..G..G..T.....C..C. MW300341.1_Hybognathus_placitus_ C..G..C...C.T.....T..G..G..C..............T..T..G........T..G..G..G..T.....C..C. NC_013763.1_Mylocheilus_caurinus ...G..C...C.G..T..A.....T.................T..T.....G..T..T........G..C..C....... NC_033926.1_Opsopoeodus_emiliae_ C..G..T..TC.T..T..A.....T.....C.....T.....T.....G.....T..T...........T..A..C.... NC_037008.1_Notropis_chalybaeus_ ......C...C.T.....G.....T.....C..T........T..T...........T..G.....G..C..C..C.... NC_037009.1_Notropis_heterolepis C..G..C...C.T...........T.............................T..T.....G.....T..C..C.... NC_037010.1_Rhinichthys_obtusus_ C.....G...C.C........G..T........T..T..C..T..T..G.....T..T..G.....G..G..C.....C. NC_037014.1_Notropis_hudsonius_i ......C...C.T.....T.....T........T........T..T........T..T.....G.....C..C..C.... NC_037015.1_Exoglossum_maxilling C..G..C...C.............T..C.....T........T..T........T..T....................C. NC_054086.1_Ptychocheilus_lucius ....T....T........G...........C..........GT..T..G........T........G..G..A..C..C. NC_054257.1_Gila_cypha_isolate_S ....T.............G..G....................T..T..G.....T..T.....G.....G..A..C.... NC_054259.1_Gila_nigrescens_isol C...T.............G..G....................T..T.....G.....T...........G..A..C.... NC_054260.1_Hybognathus_amarus_i C.....C...C.T...........T.................T..............T.....G..G..C..C..C..C. NC_054262.1_Notropis_jemezanus_v ......C...C.T.....G..G..T.....C..T.....G..T..T..G........T..G.....G..T..C..C.... Pimephales_notatus_R2S3_________ ......C..TC.T.....A..G..C........T........T..T........T..T...........C..C....... Pimephales_tenellus_tenellu_R2S1 C.....T..TC.T..T..A..G..C........T...T...................T.................C..C. Pimephales_tenellus_parvice_R2S2 ......T..TC.T..T..A..G..C........T...T..........G........T.....G...........C..C. Pimephales_notatus_R1S1_________ ......C..TC.T.....A..G..C........T........T..T........T..T...........C..C....... MG570452.1_Pimephales_promelas_i C..G..T..TC.T.....G..G..T..C.....T.....T..T..T..G.....T..T..G........G.....C..C. MG570452.1_Pimephales_promelas_S C..G..C..TC.T.....G..G..T..C.....T.....T..T..T........T..T..G........G.....C..C. AB626850.1_Megalobrama_terminali ATCTAATACCTGCCACCTCGACCTACCTCACAATTGGCAGCCTTGCATTAACAGGAACCCCATTCCTGGCCGGATTCTTC AP010779.1_Mylocheilus_caurinus_ .A..C..............AG....T......G.A..G.....G...C....G..C...........T.....G...... AP011215.1_Gila_sp._1460_mitocho .A..C..G..C........AG..........................C.G..G..T..T.....T..A.....G...... AP011263.1_Scardinius_erythropht .G..C...........G........T.....G..C..T.....G...C.......C.........T.A............ AP011267.1_Algansea_lacustris_mi .A..TT.....AT...........GTA....C.....A...T.A...C..G....C...........C............ AP011268.1_Yuriria_alta_mitochon .A..CC.G...ATT..G..A....GT.....C.....A.....A...C.GG....C.....T.....C.....G...... AP011273.1_Hybognathus_nuchalis_ .A..CT.....AT......AT...G...T.....C..G.....A...C..G....C..T........C..A......... AP011274.1_Couesius_plumbeus_mit .A..T..G..C........AG..........C..C........G...C.T.....C..T..C........T......... AP011275.1_Platygobio_gracilis_m .G..CC....CAT......A....GT.....T..C..G.....G..GC.GG.G..C...........T.....G...... AP011277.1_Erimystax_dissimilis_ .A..C..G............G....T.....GG....G.....A...C.......T...........A..A..C...... AP011279.1_Pimephales_promelas_m .A..TT.....ATT.....A....GT..T........A.....A...C.......C..T........C............ AP011280.1_Clinostomus_elongatus .A..C..G.....T.....AG...........G.G..A.....A...C.G.....T.....G.....T.....G...... AP012079.1_Luxilus_chrysocephalu .A..CT.G..CATT.....A....GT..T.....C..A.....A...C..G....C........T..C..G..G..T..T AP012080.1_Macrhybopsis_gelida_m .AT..T....CAT......A....GT..T.....C..A...T.A...C..G....C...........T..A.....T... AP012083.1_Notropis_atherinoides .A..CT....CAT......A..T.G...T..G.....G.....A...C..G....C.....T.....C.....G...... AP012084.1_Notropis_baileyi_mito .A..CT......TA.....A....G...T........A.....A...C..G....C..T........C.....G...... AP012087.1_Cyprinella_galactura_ .A..TC....CAT......A....GT..T..G.....T.....A...C..G....C...........C..G..T...... AP012088.1_Hybopsis_lineapunctat .A..CC.G...ATT..T..A....G...T........A.....A..GC..G....C.....C.....C............ AP012090.1_Luxilus_cornutus_mito .A..TC.G..CATT.....A....GT..T.....C..A.....A...C..G.G..C...........C.....G.....T AP012091.1_Lythrurus_ardens_mito .A..CT.....ATT.....A....GT........C..A.....A...C..G.G..C........T..C............ AP012092.1_Lythrurus_fumeus_mito .G..TT.....AT......A....G...T.....C..A.....A..GC.GG....C.....T..T.....G......... AP012093.1_Lythrurus_lirus_mitoc .A..TT.G...ATT.....A....G.........C..A.....A...C..G....C...........C............ AP012094.1_Lythrurus_umbratilis_ .A..CT.....ATT.....A....GT........C..A.....A...C..G....C........T..C............ AP012095.1_Macrhybopsis_meeki_mi .GT..C....CATT.....A....GT..T........A...T.A...C..G....C..T........T..A.....T... AP012097.1_Notropis_bifrenatus_m .A..CC.....ATT.....A....G...T..G.....A.....A...C..G....T.....C..T..A.....G...... AP012098.1_Pimephales_sp._MCZunc .A..TT.G...ATT.....A....G...T.....C..A.....A...C..G....C.....C..T..C.....G...... AP012100.1_Notropis_telescopus_m .A..TC.....AT...........GT..T.....C..A.....A...C..G....C...........A............ AP012101.1_Pimephales_notatus_mi .A..TT.G...ATT.....A....G...T.....C..A.....A...C..G....C.....C..T..C.....G...... AP012102.1_Pimephales_vigilax_mi .A..TT.....AT......A.G..G.........C..A..T..A...C..G....C...........T..T......... AP012103.1_Pogonichthys_macrolep .G..C..G...........AG..........CG.G..A.....A..CC.G.....C...........T.....G...... AP012106.1_Richardsonius_balteat .G..C..G...........AG.......T...G.A..A...T.G..CC.G.....T...........T..T..G...... AP012108.1_Notropis_chrosomus_mi .G..CT.G..CATT.....T....G...T..C.....A.....A...C..G....C..T..G.AT..T..T......... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .A..TT.....AT......A.G..G.........C..A..T..A...C..G....C...........T..T......... Pimephales_vigilax_R1S3_________ .A..TT.....AT......A.G..G.........C..A..T..A...C..G....C...........T..T......... DQ536429.1_Notropis_stramineus_m .G..CC.G...ATT.....A....G...T..G.....A.....A..GC..G....C...........C...........T JX910141.1_Squaliobarbus_curricu .C...........T.....A..T.....T..............A.....G.................A............ KC351187.1_Squaliobarbus_curricu .C...........T.....A..T.....T..............A.....G.................A............ KT278765.1_Pimephales_promelas_m .A..TT.....AT......A....GT..T........A.....A...C..G....C..T........C............ KT289925.1_Pimephales_promelas_m .A..TT.....AT......A....GT..T........G.....A...C..G....C..T........C............ KT424924.1_Rhinichthys_osculus_m .A..T..G...........AG....T..T...G.C..A.....A........G..C..T..G.....T.....G...... KU200257.1_Chanodichthys_ilishae .C........C..........................T.....G...C.................T.A.....G...... MF972070.1_Siphateles_bicolor_mo .G..T.....C........A.................T.....C...C.......T........T..A.....G...... MG570407.1_Notropis_chalybaeus_v .A..CC.....ATT.....A..A.G...T........G..T..A...C..G....C...........C..T..G...... MG570408.1_Notropis_bifrenatus_v .A..CC.....ATT.....A....G...T..G.....A.....A...C..G....T.....C..T..A.....G...... MG570413.1_Notropis_heterolepis_ .A..TT.....AT......A..A.GT........C..A.....A..GC..G....C.....G.....C.....G...... MG570416.1_Rhinichthys_obtusus_v .G..T........T.....AG....T..T..GG....G.....A..GC.C.....C.....C.....C............ MG570417.1_Rhinichthys_obtusus_v .G..T........T.....AG....T..T..GG....G.....A..GC.C.....C.....C.....C............ MG570420.1_Pimephales_notatus_vo .A..TT.G...ATT.....A....G...T.....C..A.....A...C..G....C.....C..T..C.....G...... MG570443.1_Notropis_hudsonius_is .GT.TT.....ATT..T..T....GT..T.GC..C..T.....A..CC..G....T...........C.....G...... MG570444.1_Rhinichthys_atratulus .A..T..G...........AG....T..T...G....A.....A...C.C.....C........................ MG570445.1_Rhinichthys_atratulus .A..T..G...........AG....T..T...G....A.....A...C.C.....C........................ MG570447.1_Luxilus_cornutus_isol .A..TC.G..CATT.....A....GT..T.....C..A.....A...C..G.G..C...........C.....G.....T MG570449.1_Luxilus_cornutus_isol .A..TC.G..CATT.....A....GT..T.....C..A.....A...C..G.G..C...........C.....G.....T MG570450.1_Pimephales_notatus_is .A..TT.G...ATT.....A....G...T.....C..A.....A...C..G....C.....C..T..C.....G...... MG570451.1_Notropis_bifrenatus_i .A..CC.....ATT.....A....G...T..G.....A.....A...C..G....T.....C..T..A.....G...... MG570453.1_Exoglossum_maxillingu .A..C..G............G....T.....GG....G.....A...C.......T...........A..A..C...... MG570454.1_Pimephales_promelas_i .A..TT.....AT......A....GT..T........A.....A...C..G....C..T........C............ MG570455.1_Notropis_atherinoides .A..CT....CAT......A..T.G...T..G.....G.....A...C..G....C.....T.....C.....G...... MG570456.1_Notropis_atherinoides .A..CT....CAT......A..T.G...T..G.....G.....A...C..G....C.....T.....C.....G...... MG570457.1_Pimephales_notatus_is .A..TT.G...ATT.....A....G...T.....C..A.....A...C..G....C.....C..T..C.....G...... MG570458.1_Pimephales_notatus_is .A..TT.G...ATT.....A....G...T.....C..A.....A...C..G....C.....C..T..C.....G...... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .A...T.....AT......A....G...T.....C..A.....A...C..G....C...........C.....G...... MT364325.1_Hybognathus_amarus_mi .A..CC.....AT......AT...GT..T........A.....A...C..G....C..T........A..A......... MT501368.1_Gila_cypha_isolate_SN .A..C.....C........A..A........................C....G..T..T........A.....G...... MT501369.1_Notropis_simus_pecose .G..CT.....ATT.....A....GT..T..G..C..A.....A...C..G....C..A........C.....G.....T MT501378.1_Hybognathus_amarus_is .A..CC.....AT......AT...GT..T........A.....A...C..G....C..T........A..A......... MT501385.1_Notropis_jemezanus_vo .A..CT.....AT......A..T.G.........C..A..T..A...C..G.G..C.....T.....C.....G...... MT501391.1_Rhinichthys_osculus_i .A..T..G...........AG....T......G.C..A.....A........G..C..T........T............ MT667239.1_Rhinichthys_osculus_t .A..T..G...........AG....T......G.C..A.....A........G..C..T........T............ MT667242.1_Luxilus_cornutus_vouc .A..TC.G..CATT.....A....GT..T.....C..A.....A...C..G.G..C...........C.....G.....T MW300340.1_Hybognathus_placitus_ .A..CT.G..CAT......A..T.G.........C..A.....A...C..G....C..T........C...........T MW300341.1_Hybognathus_placitus_ .A..CT.G..CAT......A..T.G.........C..A.....A...C..G....C..T........C...........T NC_013763.1_Mylocheilus_caurinus .A..C..............AG....T......G.A..G.....G...C....G..C...........T.....G...... NC_033926.1_Opsopoeodus_emiliae_ .A..CT......TT.....A....GT..T..T.....A.....A...C.......T..T..T..T..T..A......... NC_037008.1_Notropis_chalybaeus_ .A..CC.....ATT.....A..A.G...T........G..T..A...C..G....C...........C..T..G...... NC_037009.1_Notropis_heterolepis .A..TT.....AT......A..A.GT........C..A.....A..GC..G....C.....G.....C.....G...... NC_037010.1_Rhinichthys_obtusus_ .G..T........T.....AG....T..T..GG....G.....A..GC.C.....C.....C.....C............ NC_037014.1_Notropis_hudsonius_i .GT.TT.....ATT..T..T....GT..T.GC..C..T.....A..CC..G....T...........C.....G...... NC_037015.1_Exoglossum_maxilling .A..C..G............G....T.....GG....G.....A...C.......T...........A..A..C...... NC_054086.1_Ptychocheilus_lucius .A..C..G..C.....T..A...........................C.......T...........A.....G...... NC_054257.1_Gila_cypha_isolate_S .A..C.....C........A..A........................C....G..T..T........A.....G...... NC_054259.1_Gila_nigrescens_isol .A..C..G..C........AG..........................C....G..T..A.....T..A.....G...... NC_054260.1_Hybognathus_amarus_i .A..CC.....AT......AT...GT..T........A.....A...C..G....C..T........A..A......... NC_054262.1_Notropis_jemezanus_v .A..CT.....AT......A..T.G.........C..A..T..A...C..G.G..C.....T.....C.....G...... Pimephales_notatus_R2S3_________ .A..CT.....ATT.....A....G...T.....C..A.....A...C.GG....T........T..C............ Pimephales_tenellus_tenellu_R2S1 .A..TT.G...ATT.....A....GT..T........A.....A...C.TG....C..A...........G......... Pimephales_tenellus_parvice_R2S2 .A..TT.G...ATT.....A....GT..T........A.....A...C.CG....C..A........A..G......... Pimephales_notatus_R1S1_________ .A..CT.....ATT.....A....G...T.....C..A.....A...C.GG....T........T..C............ MG570452.1_Pimephales_promelas_i .A..TT.....AT......A....GT..T........A.....A...C..G....C..T........C............ MG570452.1_Pimephales_promelas_S .A..TT.....ATT.....A....GT..T........A.....A...C..G....C..T........C............ AB626850.1_Megalobrama_terminali TCAAAAGATGCCATTATCGAAGCCCTAAACACCTCCTACCTTAACGCCTGAGCCCTAACCCTTACACTAATTGCCACATC AP010779.1_Mylocheilus_caurinus_ .................T..G....................C.................T..A..............C.. AP011215.1_Gila_sp._1460_mitocho .....G...........T.................T..T..................G....A..............C.. AP011263.1_Scardinius_erythropht ..............C..T.................T..............G........T.................C.. AP011267.1_Algansea_lacustris_mi ...........T.....T........C.....A...C..AC...............CGG...A.....C..C........ AP011268.1_Yuriria_alta_mitochon ........C..T.....T........C.....T........C........G.....T.T...A.....C........C.. AP011273.1_Hybognathus_nuchalis_ ........C..T.....T........T..T..T.................G.....T.TT..G.....C........... AP011274.1_Couesius_plumbeus_mit ...........T..C..T..................A...................G.TT..A.....G........T.. AP011275.1_Platygobio_gracilis_m ........C........T.......................G........G.....GG..T.A.....C........... AP011277.1_Erimystax_dissimilis_ ...........T..C..T................................T.........T.A.....T........C.. AP011279.1_Pimephales_promelas_m ........C..T.....T........T.....T........A..............TGT.T.A.....T........... AP011280.1_Clinostomus_elongatus .................T.......................C.................T..A........C.....C.. AP012079.1_Luxilus_chrysocephalu .....G..C..T.....T........T.....T...........T...........TGT...A.....C........... AP012080.1_Macrhybopsis_gelida_m ...........T.....T................................G......G..T.A..T..CG.......... AP012083.1_Notropis_atherinoides .....G..C.....C..T........C.....T.................G.....TGT...A..C..T........C.. AP012084.1_Notropis_baileyi_mito ........C..T.....T..G.....T.....T........C..............T.T...A.....C........... AP012087.1_Cyprinella_galactura_ ........C..T.....T........C.....T..TC.T.................T.T...A.....TG.......... AP012088.1_Hybopsis_lineapunctat ........C..T.....T..G.....C.....T...A.............C.....T.T...A.....T........... AP012090.1_Luxilus_cornutus_mito ........C..T..............C........G........T...........TGT...A.....C........C.. AP012091.1_Lythrurus_ardens_mito ..G..G..C..T..C..T........C..T.....T..............G.....T.T...G.....C.....T..... AP012092.1_Lythrurus_fumeus_mito ..G..............T........T..T......C....C..............T.T...A.....C........... AP012093.1_Lythrurus_lirus_mitoc ..G..G..C..T.....T........C..T....................G.....T.T...G.....C........... AP012094.1_Lythrurus_umbratilis_ ..G..G..C..T..C..T........C..T.....T..............G.....T.T...G.....C........... AP012095.1_Macrhybopsis_meeki_mi ...........T.....T..G...............C.............G.........T.A..T..C..C........ AP012097.1_Notropis_bifrenatus_m ........C..T........G.....T.....T...C.............G.....TGT...C.....C..C........ AP012098.1_Pimephales_sp._MCZunc ..T.....C..T.....T........T.....T.......................CGT...A.....T........... AP012100.1_Notropis_telescopus_m ........C..T.....T........T.....T.................G.....TGT.T.G..G..C........G.. AP012101.1_Pimephales_notatus_mi ..T.....C..T.....T........T.....T.......................CGT...A.....T........... AP012102.1_Pimephales_vigilax_mi ..G.....C..T.....T........T.....T..AC...................CG....A.....T........... AP012103.1_Pogonichthys_macrolep .................T.......................C.................T..A...........T..C.. AP012106.1_Richardsonius_balteat .................T.................T.......................T..A..............C.. AP012108.1_Notropis_chrosomus_mi ........C..T.....T........T.....T........C........G.....T.T...A.....T..C........ AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..G.....C..T.....T........T.....T..AC...................CG....A.....T........... Pimephales_vigilax_R1S3_________ ..G.....C..T.....T........T.....T..AC...................CG....A.....T........... DQ536429.1_Notropis_stramineus_m ........C..T.....T........T.....T...C.............G.....TGTAT.G..G..C........... JX910141.1_Squaliobarbus_curricu ..G........G..C..T............................................G........C.....G.. KC351187.1_Squaliobarbus_curricu ..G........G..C..T............................................G........C.....G.. KT278765.1_Pimephales_promelas_m ........C..T.....T........T.....T........A..............TGT...A.....T........... KT289925.1_Pimephales_promelas_m ........C..T.....T........T.....T........A..............TGT.T.A.....T........... KT424924.1_Rhinichthys_osculus_m .....G.....T..C..T..G.....G.......................G........T..G................. KU200257.1_Chanodichthys_ilishae ..............C..T.................T...................................C........ MF972070.1_Siphateles_bicolor_mo .................T.................T..T...........G...........A..T...G.......C.. MG570407.1_Notropis_chalybaeus_v ........C..T.....T........T.....T........C..............C.T...A.....C.....T..... MG570408.1_Notropis_bifrenatus_v ........C..T........G.....T.....T...C.............G.....TGT...C.....C..C........ MG570413.1_Notropis_heterolepis_ ........C..T.....T..G.....C.....T.....T.................CGT...G.....T..C........ MG570416.1_Rhinichthys_obtusus_v .....G...........T..G.....G.............................T.....A..G..GG.......G.. MG570417.1_Rhinichthys_obtusus_v .....G...........T..G.....G.............................T.....A..G..GG.......G.. MG570420.1_Pimephales_notatus_vo ..T.....C..T.....T........T.....T.......................CGT...A.....T........... MG570443.1_Notropis_hudsonius_is ........C...........G.....T........G...A.C........G.....C.T...A.....T........... MG570444.1_Rhinichthys_atratulus .................T.................T.......................T..A..G..GG.......... MG570445.1_Rhinichthys_atratulus .................T.................T.......................T..A..G..GG.......... MG570447.1_Luxilus_cornutus_isol ........C..T..............C........G........T...........TGT...A.....C........C.. MG570449.1_Luxilus_cornutus_isol ........C..T..............C........G........T...........TGT...A.....C........C.. MG570450.1_Pimephales_notatus_is ..T.....C..T.....T........T.....T.......................CGT...A.....T........... MG570451.1_Notropis_bifrenatus_i ........C..T........G.....T.....T...C.............G.....TGT...C.....C..C........ MG570453.1_Exoglossum_maxillingu ...........T..C..T................................T.........T.A.....T........C.. MG570454.1_Pimephales_promelas_i ........C..T.....T........T.....T........A..............TGT.T.A.....T........... MG570455.1_Notropis_atherinoides .....G..C.....C..T........C.....T.................G.....TGT...A..C..T........C.. MG570456.1_Notropis_atherinoides .....G..C.....C..T........C.....T.................G.....TGT...A..C..T........C.. MG570457.1_Pimephales_notatus_is ..T.....C..T.....T........T.....T.......................CGT...A.....T........... MG570458.1_Pimephales_notatus_is ..T.....C..T.....T........T.....T.......................CGT...A.....T........... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ........C........T........C.....T........C..............T.T...A..T..T..C........ MT364325.1_Hybognathus_amarus_mi ........C..T.....T........T..T..T.................G.....T.TT..G.....C........... MT501368.1_Gila_cypha_isolate_SN .................T........G........T..T.......................A..............C.. MT501369.1_Notropis_simus_pecose ........C..T.....T..G.....T.....T........C........G.....CGT...A..G..C..C..T..... MT501378.1_Hybognathus_amarus_is ........C..T.....T........T..T..T.................G.....T.TT..G.T...C........... MT501385.1_Notropis_jemezanus_vo ..G.....C.....C..T..G.....T.....T.................G.....TGT...A..C..C........C.. MT501391.1_Rhinichthys_osculus_i ..G..G.....T.....T..G........T...........C..............C.....A.....G........G.. MT667239.1_Rhinichthys_osculus_t ..G..G.....T.....T..G........T...........C..............C.....A.....G........G.. MT667242.1_Luxilus_cornutus_vouc ........C..T..............C........G........T...........TGT...A.....C........C.. MW300340.1_Hybognathus_placitus_ ..G.....C..T.....T........T..T..T.......................TGTT..A.....C........... MW300341.1_Hybognathus_placitus_ ..G.....C..T.....T..G.....T..T..T.......................TGTT..A.....C........... NC_013763.1_Mylocheilus_caurinus .................T..G....................C.................T..A..............C.. NC_033926.1_Opsopoeodus_emiliae_ ........C..T.....T........T.....T.......................TGTA..A.....T.....T..C.. NC_037008.1_Notropis_chalybaeus_ ........C..T.....T........T.....T........C..............C.T...A.....C.....T..... NC_037009.1_Notropis_heterolepis ........C..T.....T..G.....C.....T.....T.................CGT...G.....T..C........ NC_037010.1_Rhinichthys_obtusus_ .....G...........T..G.....G.............................T.....A..G..GG.......G.. NC_037014.1_Notropis_hudsonius_i ........C...........G.....T........G...A.C........G.....C.T...A.....T........... NC_037015.1_Exoglossum_maxilling ...........T..C..T................................T.........T.A.....T........C.. NC_054086.1_Ptychocheilus_lucius .................T.................T..T.......................A..............C.. NC_054257.1_Gila_cypha_isolate_S .................T........G........T..T.......................A..............C.. NC_054259.1_Gila_nigrescens_isol .................T.................T..T.......................A..............C.. NC_054260.1_Hybognathus_amarus_i ........C..T.....T........T..T..T.................G.....T.TT..G.....C........... NC_054262.1_Notropis_jemezanus_v ..G.....C.....C..T..G.....T.....T.................G.....TGT...G..C..C........C.. Pimephales_notatus_R2S3_________ ..T.....C..T..............T.....T...C.............G.....TGT...A.....C.....T..... Pimephales_tenellus_tenellu_R2S1 .....G..C..T.....T........T.....T.........................T...G..T..C........C.. Pimephales_tenellus_parvice_R2S2 .....G..C..T.....T........T.....T........C................T...G..T..C........C.. Pimephales_notatus_R1S1_________ ..T.....C..T..............T.....T...C.............G.....TGT...A.....C.....T..... MG570452.1_Pimephales_promelas_i ........C..T.....T........T.....T........A..............TGT.T.A.....T........... MG570452.1_Pimephales_promelas_S ........C..T.....T........T.....T........A..............TGT.T.A.....T........... AB626850.1_Megalobrama_terminali ATTCACCGCAGTTTATAGTTTCCGAGTAGTATTCTTCGTAACCATGGGATCCCCCCGATTCCTGCCACTATCCCCCATCA AP010779.1_Mylocheilus_caurinus_ C.....T..C........C........CA.T.A.....................T..G..T..T...........T.... AP011215.1_Gila_sp._1460_mitocho ...T.....G..A..C..C.....G..C....AT..T.................T.....TT....C..C.......... AP011263.1_Scardinius_erythropht ...............C..C.....G..T....A......G..T...........T........A..G..C..T..T..T. AP011267.1_Algansea_lacustris_mi ......T..T.....C.........C.CA.C.A......G..T..A..G..T...........T.....T........T. AP011268.1_Yuriria_alta_mitochon C.....T........C..C..T.....T....A.........T..A...........G.....C..............T. AP011273.1_Hybognathus_nuchalis_ C.....T........C..C..T..G..C....A.........T..A.....T..A..G.....C...T..........T. AP011274.1_Couesius_plumbeus_mit .........G..C..C..C..T..TC.C....A............A........T..G...T.A.....G..A....... AP011275.1_Platygobio_gracilis_m T.....T........C........G..C..G.A......G..T....................C..............T. AP011277.1_Erimystax_dissimilis_ C.....T........C..C......C.C....AT........T..A..G.....A..G.....T...........T..T. AP011279.1_Pimephales_promelas_m ...T..T.....C..C..............C.A.........T........T..T..G..T..C..G...........T. AP011280.1_Clinostomus_elongatus C.....T........C..C..T.....C....A.........T..A........T........T...T.......A.... AP012079.1_Luxilus_chrysocephalu C.....T.....C..C..C........T....AT..............G.....A........A..CT..........T. AP012080.1_Macrhybopsis_gelida_m C..T..T........C..C..T.....C....A.........G..A.................T...T.......T..T. AP012083.1_Notropis_atherinoides ......T..T..C.....C.....T..C..G.AT..T.....T...........A........C...T.......T..T. AP012084.1_Notropis_baileyi_mito C.....T........C..C.....G..C....A......G.....A.....T..A..G.....C.....G..A..T..T. AP012087.1_Cyprinella_galactura_ C..T........C..C..C.....C..G....AT.....T........G..T.....C.....T...T............ AP012088.1_Hybopsis_lineapunctat C...........C..C..C.....CA.C....AT........T..A.....G..A..G....CC...T....A..T..T. AP012090.1_Luxilus_cornutus_mito T.....T.....C.....C........C..G.A...............G..T.....G.....C..TT....T.....T. AP012091.1_Lythrurus_ardens_mito T.....T..T........C........C..C.AT..T.....T..A..T..T.....G.....CA............... AP012092.1_Lythrurus_fumeus_mito T.....T...........C..T.....TA.C.A......G..T.....C..T..A..G.....C...T.G........T. AP012093.1_Lythrurus_lirus_mitoc T.....T..T..............G..C..C.AT..T........A..C..T.....G.....CA..........T..T. AP012094.1_Lythrurus_umbratilis_ T.....T..T........C........C..C.AT..T.....T..A..C..T.....G.....CA............... AP012095.1_Macrhybopsis_meeki_mi ...T..T........C..C..T.....C..C.A...T.....T..A.................T...T.......T..T. AP012097.1_Notropis_bifrenatus_m C..............C..C........T..G.AT........T........T..A........C...........T..T. AP012098.1_Pimephales_sp._MCZunc ......T........C..C...........C.A.........T........T..A..G.....C..CT.......A..T. AP012100.1_Notropis_telescopus_m C..T..T....................C..G.A......G..T..A.....T..A..G.....T...T.G........T. AP012101.1_Pimephales_notatus_mi ......T........C..C...........C.A.........T.....G..T..A..G.....CT.CT.......A..T. AP012102.1_Pimephales_vigilax_mi ......T........C..C...........C.A.........T..A.....T..A..G..T..C..C.....G..T..T. AP012103.1_Pogonichthys_macrolep G.....T..C........C........CA.T.A.........T...........T.....T..T...........T.... AP012106.1_Richardsonius_balteat C.....T........C..C..T.....C....A.........T..A........T........T.....G.....A.... AP012108.1_Notropis_chrosomus_mi C...........C..C..C........C..C.A......G........G.....A........C..C..T..T..T..T. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ......T........C..C...........C.A.........T..A.....T..A..G..T..C..C.....G..T..T. Pimephales_vigilax_R1S3_________ ......T........C..C...........C.A.........T..A.....T..A..G..T..C..C.....G..T..T. DQ536429.1_Notropis_stramineus_m C.....T.....C.....C...........C.A.........T.....G.....A........T.....G.....A.... JX910141.1_Squaliobarbus_curricu T..T.....G........C................................T........T..A...T............ KC351187.1_Squaliobarbus_curricu T..T.....G........C................................T........T..A...T............ KT278765.1_Pimephales_promelas_m ...T..T.....C..C..............C.A.........T........T.....G..T..C..............T. KT289925.1_Pimephales_promelas_m ...T..T.....C..C..............C.A.........T........T..T..G..T..C..............T. KT424924.1_Rhinichthys_osculus_m C.....T........C..C........C....AT.....T..T...........A........T...T..........T. KU200257.1_Chanodichthys_ilishae .........G..C.....C..............T..............G...........T..............T..T. MF972070.1_Siphateles_bicolor_mo C..T........A..C..C........C....AT..T...........G.....T......T.A...........T..TG MG570407.1_Notropis_chalybaeus_v C.....T........C..C.....T.......A..................T..A..G.....C...T.......T..T. MG570408.1_Notropis_bifrenatus_v C..............C..C........T..G.AT........T........T..A........C...........T..T. MG570413.1_Notropis_heterolepis_ C.....T.....A.....C........C....A......G..T.....G..T..A..G.....C...T.......T.... MG570416.1_Rhinichthys_obtusus_v C.....T........C..C.....T..T....AT.....T..T.....GA..........T..T..G..C.....T.... MG570417.1_Rhinichthys_obtusus_v C.....T........C..C.....T..T....AT.....T..T.....GA..........T..T..G..C.....T.... MG570420.1_Pimephales_notatus_vo ......T........C..C...........C.A.........T........T..A..G.....C..CT.......A..T. MG570443.1_Notropis_hudsonius_is C.....T.....C.....C.....G..T..C.A......G..T.................T..T...T.......T..T. MG570444.1_Rhinichthys_atratulus C.....T..G.....C..C.....T..C....AT..T..C..T...........A..G..T..T..G..C.......... MG570445.1_Rhinichthys_atratulus C.....T..G.....C..C.....T..C....AT..T..C..T......C....A..G..T..T.....C.......... MG570447.1_Luxilus_cornutus_isol T.....T.....C.....C........C..G.A...............G..T.....G.....C..TT..........T. MG570449.1_Luxilus_cornutus_isol T.....T.....C.....C........C..G.A...............G..T.....G.....C..TT..........T. MG570450.1_Pimephales_notatus_is ......T........C..C...........C.A.........T........T..A..G.....C..CT.......A..T. MG570451.1_Notropis_bifrenatus_i C..............C..C........T..G.AT........T........T..A........C...........T..T. MG570453.1_Exoglossum_maxillingu C.....T........C..C......C.C....AT........T..A..G.....A..G.....T...........T..T. MG570454.1_Pimephales_promelas_i ...T..T.....C..C..............C.A.........T........T..T..G..T..C..............T. MG570455.1_Notropis_atherinoides ......T..T..C.....C.....T..C..G.AT..T.....T...........A........C...T.......T..T. MG570456.1_Notropis_atherinoides ......T..T..C.....C.....T..C..G.AT..T.....T...........A........C...T.......T..T. MG570457.1_Pimephales_notatus_is ......T........C..C...........C.A.........T........T..A..G.....C..CT.......A..T. MG570458.1_Pimephales_notatus_is ......T........C..C...........C.A.........T........T..A..G.....C..CT.......A..T. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v C...........C..C..C........C..T.A............A........A.....T..C.....T.....G.... MT364325.1_Hybognathus_amarus_mi C.....T........C..C..T..G.......A...T.....T..A.....T..A........C...T.......T..T. MT501368.1_Gila_cypha_isolate_SN ...T........A..C..C.....G..C..G.AT..T..C........G.....T.....TT.A................ MT501369.1_Notropis_simus_pecose C.....T.....C..C..C.....G..C..C.A...T..G.....A.....T..A..G..T..C..T..G.....T..T. MT501378.1_Hybognathus_amarus_is C.....T........C..C..T..G.......A...T.....T..A.....T..A........C...T.......T..T. MT501385.1_Notropis_jemezanus_vo C.....T.....C..C..C.....G..T..G.AT..T.....T.....G.....A........C...........T.... MT501391.1_Rhinichthys_osculus_i C.....T........C..C........C....A......T..T......C....A........T.....G.....T.... MT667239.1_Rhinichthys_osculus_t C.....T........C..C........C....A......T..T...........A........T.....G.....T.... MT667242.1_Luxilus_cornutus_vouc T.....T.....C.....C........C..G.A...............G..T.....G.....C..TT..........T. MW300340.1_Hybognathus_placitus_ C.....T........C..C........C....A.........T........T..A..G.....CG.............T. MW300341.1_Hybognathus_placitus_ C.....T........C..C........C....A.........T........T..A..G.....CG.............T. NC_013763.1_Mylocheilus_caurinus C.....T..C........C........CA.T.A.....................T..G..T..T...........T.... NC_033926.1_Opsopoeodus_emiliae_ ............C..C..C.............A...T.....T........T..A..G...T.A...........T..T. NC_037008.1_Notropis_chalybaeus_ C.....T........C..C.....T.......A..................T..A..G.....C...T.......T..T. NC_037009.1_Notropis_heterolepis C.....T.....A.....C........C....A......G..T.....G..T..A..G.....C...T.......T.... NC_037010.1_Rhinichthys_obtusus_ C.....T........C..C.....T..T....AT.....T..T.....GA..........T..T..G..C.....T.... NC_037014.1_Notropis_hudsonius_i C.....T.....C.....C.....G..T..C.A......G..T.................T..T...T.......T..T. NC_037015.1_Exoglossum_maxilling C.....T........C..C......C.C....AT........T..A..G.....A..G.....T...........T..T. NC_054086.1_Ptychocheilus_lucius ...T........A..C..C........T....AT..T..G........G.....T..G..TT.A...T.......T..T. NC_054257.1_Gila_cypha_isolate_S ...T........A..C..C.....G..C..G.AT..T..C........G.....T.....TT.A................ NC_054259.1_Gila_nigrescens_isol ...T........A..C..C........C....AT..T...........G.....T.....TT.A...........T.... NC_054260.1_Hybognathus_amarus_i C.....T........C..C..T..G.......A...T.....T..A.....T..A........C...T.......T..T. NC_054262.1_Notropis_jemezanus_v G.....T.....C..C..C.....G..T..G.AT..T.....T.....G.....A........C...........T.... Pimephales_notatus_R2S3_________ ......T........C..C...........C.AT........T........T..A..G.....C..CT..........T. Pimephales_tenellus_tenellu_R2S1 G.....T..G..C..C..C...........T.A......T..T........T..A........C.....C.......... Pimephales_tenellus_parvice_R2S2 G.....T..G..C..C..C.....G.....T.A......T..T........T..A........C.....C.....T.... Pimephales_notatus_R1S1_________ ......T........C..C...........C.AT........T........T..A..G.....C..CT..........T. MG570452.1_Pimephales_promelas_i ...T..T.....C..C..............C.A.........T........T..T..G..T..C..............T. MG570452.1_Pimephales_promelas_S ...T..T.....C..C..............C.A.........T........T..T..G..T..C..............T. AB626850.1_Megalobrama_terminali ACGAAAATAACCCATTAGTTATCAACCCCATCAAACGACTTGCCTGAGGAAGTATCATTGCAGGGCTTATCATTACATCT AP010779.1_Mylocheilus_caurinus_ .......C.....GCA...G.....T..T..T.....G..............C..TG.......AT.C..........TA AP011215.1_Gila_sp._1460_mitocho .......C.....C.....G..T..............G.....T..G.....C...G....G..A...G.G.......A. AP011263.1_Scardinius_erythropht .......C......C.G..A..T..T..T.................G.....C..TG....G..A.....T.....C... AP011267.1_Algansea_lacustris_mi .T...G.C......C.CA.AG..C.G..T..T.....C...........G.....T........A...G.........AC AP011268.1_Yuriria_alta_mitochon .T...G.C......C.TA.AG..C.A..TG.T....................C..T........A...G.T.......AC AP011273.1_Hybognathus_nuchalis_ .T...G........C.CA.A..TC.G..T.......................C........G..A...C....C....GC AP011274.1_Couesius_plumbeus_mit ....G..CG.A...C....G........T........G..............C...G....G..AT....T..CT.C.AC AP011275.1_Platygobio_gracilis_m .T...G........C.TA.A...C.A..GG.T..G.................C..T........A.....T.....G.AC AP011277.1_Erimystax_dissimilis_ .......C.....G.....G..T..T..T..T.....G..............C..T........A...G.T.......AC AP011279.1_Pimephales_promelas_m .T...G.C......C.TA.G..TC.A..TG.A.......................T........C..C.....C....GC AP011280.1_Clinostomus_elongatus .T.....C..T........G..T..G.....T........C........G..C..T.....G..A...........CCTC AP012079.1_Luxilus_chrysocephalu .T...G.C......C.TA.GG.TC.A..TG.T....................C...C.......A...G....C....GC AP012080.1_Macrhybopsis_gelida_m .....G........C.TA.A.C.C.A..T..T.......................T........A..AG.T..C....A. AP012083.1_Notropis_atherinoides .....G....T...C.TA.A..TC.A..TG.G..............G.....C..TG.......A...G.........GC AP012084.1_Notropis_baileyi_mito .....G.C......C.TA.G...C.A..TG.T....................C..T.....G......G.........G. AP012087.1_Cyprinella_galactura_ ....GG.......TC.TA.GG.T..A...G.T..G.................C..T.....C..A...G.T..C..G..C AP012088.1_Hybopsis_lineapunctat .T...G....T..C..CA.A..TCGA...G.T.....G..............C..T...........C..T.......G. AP012090.1_Luxilus_cornutus_mito .T...G.C..T...C.TA.G..TC.G..TG.T....................C...G...........G.......C.GC AP012091.1_Lythrurus_ardens_mito .....G.CG.......TA.GG..C.A.....T.....G..............C..T.....G..C...G.........A. AP012092.1_Lythrurus_fumeus_mito .T...G.C......C.TA.AG.TCGA...G.T....................C..T........C...G.T.......GC AP012093.1_Lythrurus_lirus_mitoc GT...G........C.TA.GG..C.A.....T..G..G..............C..T.....G..C...G.........GC AP012094.1_Lythrurus_umbratilis_ .....G.CG.......TA.GG..C.G.....T....................C..T.....G..C...G.........G. AP012095.1_Macrhybopsis_meeki_mi .....G.CG.....C.TA.A.C.CGA..T..T.......................T........A..A..T.......GC AP012097.1_Notropis_bifrenatus_m ....GG....T...C.TA.A..TC.A..TG.T.....T..............C...........A...G.........A. AP012098.1_Pimephales_sp._MCZunc .T...G....T...C.TA.A..TC.G..TG.T.....G..............C..T........A..C..T.....C.GC AP012100.1_Notropis_telescopus_m .T..GG........C.TA.A..TC.G..TG.T....................C..TG..........CG........CA. AP012101.1_Pimephales_notatus_mi .T...G....T...C.TA.A..TC.G..TG.T.....G..............C..T........A..C..T..C..C.GC AP012102.1_Pimephales_vigilax_mi .T........T...C..A.A..TC.A..TG.T...........T........C...G.......A.....T......A.. AP012103.1_Pogonichthys_macrolep G......C.....CCA.A.A..T.....T..T.....G..............C..TG.......A..C.........CTA AP012106.1_Richardsonius_balteat .......C........G....CT.....T..T........C.....G.....C..TG....G...........C..G... AP012108.1_Notropis_chrosomus_mi .T...G........C.TA.AG.TC.G...G.A..............G.....C..T........A...G.........GC AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .T........T...C..A.A..TC.A..TG.T...........T........C...G.......A.....T......A.. Pimephales_vigilax_R1S3_________ .T........T...C..A.A..TC.A..TG.T...........T........C...G.......A.....T......A.. DQ536429.1_Notropis_stramineus_m .....GG...T..CC.CA.GG.TC.A..TG.T....................C..TG..........C..T.......G. JX910141.1_Squaliobarbus_curricu .T.....C......C....A........T.......................C..TG.......A.....T........C KC351187.1_Squaliobarbus_curricu .T.....C......C....A........T.......................C..TG.......A.....T........C KT278765.1_Pimephales_promelas_m .T...G........C.TA.AG..C.A..TG.A.......................T........C..C..T..C....GC KT289925.1_Pimephales_promelas_m .T...G.C......C.TA.G..TC.A..TG.A.......................T........C..C.....C....GC KT424924.1_Rhinichthys_osculus_m ....G..C.......C...C.....T..T..T........C.....G.....C...........A.....T.....C... KU200257.1_Chanodichthys_ilishae .......C..T........C........T.......................C..T........A............... MF972070.1_Siphateles_bicolor_mo .............C.....A..T.....T..T....................C..T.....G..A...G.A.......A. MG570407.1_Notropis_chalybaeus_v ....G.........C.TA.A..TC.A..TG.T.......................T............G.........G. MG570408.1_Notropis_bifrenatus_v ....GG....T...C.TA.A..TC.A..TG.T.....T..............C...........A.............A. MG570413.1_Notropis_heterolepis_ .T...G.......GC.TA.A..TC.A..TG.T....................C..T........A........C....AC MG570416.1_Rhinichthys_obtusus_v .......C...........C..TGG...T.....G..G..............C........G..C...G.T........C MG570417.1_Rhinichthys_obtusus_v .......C...........C..TGG...T.....G..G..............C........G..C...G.T........C MG570420.1_Pimephales_notatus_vo .T...G....T...C.TA.A..TC.G..TG.T.....G..............C..T........A..C..T.....C.GC MG570443.1_Notropis_hudsonius_is .T...G.C......C.TA.GG.TC.A..TG.T....................C..T............G.T.....C.A. MG570444.1_Rhinichthys_atratulus .......C........G..G..T.....T.......................C........G..C...G.T.....G..C MG570445.1_Rhinichthys_atratulus .......C........G..G..T.....T.......................C........G..C...G.T.....G..C MG570447.1_Luxilus_cornutus_isol .T...G.C..T...C.TA.GG.TC.G..TG.T....................C...............G.......C.GC MG570449.1_Luxilus_cornutus_isol .T...G.C..T...C.TA.GG.TC.G..TG.T....................C...............G.......C.GC MG570450.1_Pimephales_notatus_is .T...G....T...C.TA.A..TC.G..TG.T.....G..............C..T........A..C..T.....C.GC MG570451.1_Notropis_bifrenatus_i ....GG....T...C.TA.A..TC.A..TG.T.....T..............C...............G.........A. MG570453.1_Exoglossum_maxillingu .......C.....G.....G..T..T..T..T.....G..............C..T........A...G.T.......AC MG570454.1_Pimephales_promelas_i .T...G.C......C.TA.G..TC.A..TG.A.......................T........C..C.....C....GC MG570455.1_Notropis_atherinoides .....G........C.TA.A..TC.A..TG.A..............G.....C..TG....G..A...G.T.......GC MG570456.1_Notropis_atherinoides .....G....T...C.TA.A..TC.A..TG.G..............G.....C..TG.......A...G.........GC MG570457.1_Pimephales_notatus_is .T...G....T...C.TA.A..TC.G..TG.T.....G..............C..T........A..C..T.....C.GC MG570458.1_Pimephales_notatus_is .T...G.C..T...C.TA.A..TC.G..TG.T.....G..............C..T........A..C..T.....C.GC MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .T..GG.C......C.TA.G..TC.A...G.A....................C..T......................GC MT364325.1_Hybognathus_amarus_mi .T...G.......GC.TA.AG.TC.A..TG.T..G..G........G..............G..A...C.T.......AC MT501368.1_Gila_cypha_isolate_SN .......C.....C..G..G..T....................T..G.....C...G.......A...G.G.......A. MT501369.1_Notropis_simus_pecose .T...G.C......C.CA.GG.TC.G..TG.A....................C...G...........G....C....AC MT501378.1_Hybognathus_amarus_is .T...G.......GC.TA.AG.TC.A..TG.T..G..G........G..............G..A...C.T.......AC MT501385.1_Notropis_jemezanus_vo .....G.C.....GC.TA.A..TC.A..TG.A..G.................C..TG.......A..AG.......G.GC MT501391.1_Rhinichthys_osculus_i ....G..........C...A.....T..T..T..............R.....C..TG....G........T......... MT667239.1_Rhinichthys_osculus_t ....G.....T....C...A.....T..T..T....................C..TG....G........T......... MT667242.1_Luxilus_cornutus_vouc .T...G.C..T...C.TA.GG.TC.G..TG.T....................C...............G.......C.GC MW300340.1_Hybognathus_placitus_ .T..GG........C.CA.GG.TC.A..TG....G..G...........G..C..T........A..CC.........GC MW300341.1_Hybognathus_placitus_ .T..GG........C.CA.GG.TC.A..TG....G..G...........G..C..T........A..CC.........GC NC_013763.1_Mylocheilus_caurinus .......C.....GCA...G.....T..T..T.....G..............C..TG.......AT.C..........TA NC_033926.1_Opsopoeodus_emiliae_ .T...G.......CC.TA.A..TCGA..G..T.....G.................T.....T..C..C.....C...G.C NC_037008.1_Notropis_chalybaeus_ ....G.........C.TA.A..TC.A..TG.T.......................T............G.........G. NC_037009.1_Notropis_heterolepis .T...G.......GC.TA.A..TC.A..TG.T....................C..T........A........C....AC NC_037010.1_Rhinichthys_obtusus_ .......C...........C..TGG...T.....G..G..............C........G..C...G.T........C NC_037014.1_Notropis_hudsonius_i .T...G.C......C.TA.GG.TC.A..TG.T....................C..T............G.T.....C.A. NC_037015.1_Exoglossum_maxilling .......C.....G.....G..T..T..T..T.....G..............C..T........A...G.T.......AC NC_054086.1_Ptychocheilus_lucius .......C.....C.....G........T..............T........C...G.C.....A...G.A.......AC NC_054257.1_Gila_cypha_isolate_S .......C.....C..G..G..T....................T..G.....C...G.......A...G.G.......A. NC_054259.1_Gila_nigrescens_isol .......C.....C.....G..T.....A..............T........C...G....G..A...G.A.......A. NC_054260.1_Hybognathus_amarus_i .T...G.......GC.TA.AG.TC.A..TG.T..G..G........G..............G..A...C.T.......AC NC_054262.1_Notropis_jemezanus_v ....GG.C.....GC.TA.A..TC.A..TG.G..G.................C..TG.......A..AG.........GC Pimephales_notatus_R2S3_________ .T...G.CG.....C.GA.AG.TC.G..TG.T.....G..............C..T........A..C..........GC Pimephales_tenellus_tenellu_R2S1 GT...G.C.....CC.TA.A..TC.G..TG.T................................A..C..........GC Pimephales_tenellus_parvice_R2S2 GT...G.C.....CC.TA.A..TC.G..TG.T..G..G..................G.......A..C..........GC Pimephales_notatus_R1S1_________ .T...G.CG.....C.GA.AG.TC.G..TG.T.....G..............C..T........A..C..........GC MG570452.1_Pimephales_promelas_i .T...G.C......C.TA.G..TC.A..TG.A.......................T........C..C.....C....GC MG570452.1_Pimephales_promelas_S .T...G.C......C.TA.G..TC.A..TG.A.......................T........C..C.....C....GC AB626850.1_Megalobrama_terminali AACTTCCTACCCTCAAAAACACCCATCATAACAATACCAGCCACCCTAAAACTAGCAGCCCTCATAGTAACCATCGCCGG AP010779.1_Mylocheilus_caurinus_ ...C................GT..G....G.....G..C.G......G..GG.GATG.....T..C.....T..TAT... AP011215.1_Gila_sp._1460_mitocho ........C....T..........G.T....T......CATT...T................TG.C.........AT... AP011263.1_Scardinius_erythropht ..T...T.G.....T..C..G..TG.A..G..G.....CA.......G...A..........A..T.....T..T.T... AP011267.1_Algansea_lacustris_mi ........C...AT......C..A..T..G..C..G..TA.T..T......G....T.....G.......GT..TA.... AP011268.1_Yuriria_alta_mitochon ........G...AT.........AG.......T.....CA.T...T.....G........T.A.....GG.T..TA.... AP011273.1_Hybognathus_nuchalis_ ..T.....G..TAT.........AG.G.....T.....T.TA.........G.G........A......G.T..TA.... AP011274.1_Couesius_plumbeus_mit ..T...T......................G........TA.T.G...C...A....G........C..G..T..T.TT.. AP011275.1_Platygobio_gracilis_m ...........ACT..........G.T..G..T......ATT.....G...G.C......T.G..G..GG....TAT... AP011277.1_Erimystax_dissimilis_ ........T....T.........TG.............CC...........A.......T..T..C..G..T..TCTT.. AP011279.1_Pimephales_promelas_m ........G..TAT.........A.....G..C.....TATTG.T..T..GG..A.....T.AT.....G.T..T..... AP011280.1_Clinostomus_elongatus .............TG......T.AG..........G..CC....T........GAT......T..C.....T..TATT.. AP012079.1_Luxilus_chrysocephalu ........G...ATG..G.....AG.T.....T..G..T.TT.........G.G........A.....GG.TG.TA.T.. AP012080.1_Macrhybopsis_gelida_m .............T..................T.....CT.TG..T.....A..........A......G.T..TATT.. AP012083.1_Notropis_atherinoides ........G...ATG..G..G..AG.T.....T..G..TA..G........G.GA.......A..G..GG.T..TA.T.. AP012084.1_Notropis_baileyi_mito ........G...ATG.....G..GG.T.....C..G..TA.T.....G...G..A.......A..G.CCG..G..A.... AP012087.1_Cyprinella_galactura_ ..T.....G..TAT.........AG.A..G..C.....TA..C....G...G.T........G..G..CG.....ATT.. AP012088.1_Hybopsis_lineapunctat ........C...AT.........AG.......C..G..CATG.........G.GA.......T..G..GG.A..T.TT.. AP012090.1_Luxilus_cornutus_mito ........G...ATG..G.....GG.T.....T..G..T.TT.........G..A.......A..G..GG.T..TA.T.. AP012091.1_Lythrurus_ardens_mito ............AT.........AG.......C.....TATAG.AT.....G.GA.....T.AT.....G....TA.... AP012092.1_Lythrurus_fumeus_mito .....T..G..TAT......G..GG.T.....T..G..TA.T.........G.GA.....T.GT.G...G....TA.... AP012093.1_Lythrurus_lirus_mitoc ............ATG........AG.T..G..C..G..TATA.TA......G.G......T.AT.G.CGG....TA.... AP012094.1_Lythrurus_umbratilis_ ...........TAT.........AG.......C.....TATA..AT.....G.GA.....T.AT...C.G....TA.... AP012095.1_Macrhybopsis_meeki_mi ............CT..........G.......T.....TT.T..TT.....A..........T......G.TG.TATT.. AP012097.1_Notropis_bifrenatus_m ..T.....C...AT......C..AG.T.....T.....TATT..T......G.GA.......A.....CG.T..TA.A.. AP012098.1_Pimephales_sp._MCZunc ...........TATG........AG.T.....T.....TCTTG........G..A.......A.....CG.T..TA.T.. AP012100.1_Notropis_telescopus_m ........G..TATC..G.....AG.T..G..T..G..CA.A.........G..A.C.....G.....TG.T...A.T.. AP012101.1_Pimephales_notatus_mi ...........TAT.........AG.T.....T.....T.TTG........G..A.......A.....CG.T..TA.T.. AP012102.1_Pimephales_vigilax_mi ..T..T.....TAT.........AG.A.....T.....CTTTG........A..........A......G.T...ATT.. AP012103.1_Pogonichthys_macrolep ........G.....G......T..G....G..G..G..C.G......G......AT......T..C.....T..TATT.. AP012106.1_Richardsonius_balteat ..T.................GT.AG.......C..G..C.G......G...G.GATG........C......C.T.TT.. AP012108.1_Notropis_chrosomus_mi ........G..TAT.........AG.T..G..C..G..TAT..........G.GA.......A..G..GG.T..TA.T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..T..T.....TAT.........AG.A.....T.....CTTTG........A..........A......G.T...ATT.. Pimephales_vigilax_R1S3_________ ..T..T.....TAT.........AG.A.....T.....CTTTG........A..........A......G.T...ATT.. DQ536429.1_Notropis_stramineus_m ........G..TAT......G..AG.......T.....C.TGG........G.G..C.....AGC...GG..G..A.... JX910141.1_Squaliobarbus_curricu ...........A...........T...............A.T.............................T..TATT.. KC351187.1_Squaliobarbus_curricu ...........A...........T...............A.T.............................T..TATT.. KT278765.1_Pimephales_promelas_m .....T..G..TAT.......T.A........C.....TATTG.G..T..GG..A.....T.AT.....G.T..TA.... KT289925.1_Pimephales_promelas_m ........G..TAT.........A.....G..C.....TATTG.T..T..GG..A.....T.AT.....G.T..T..... KT424924.1_Rhinichthys_osculus_m ......T.G............T.......G........CA..........GA..........T..C..G..TG.TATT.. KU200257.1_Chanodichthys_ilishae ..........................T..G.........A...........T...................T...AT... MF972070.1_Siphateles_bicolor_mo .....T..C....T......C...G.T....T......CA..........G........T..T..T.....A..TATT.. MG570407.1_Notropis_chalybaeus_v ........G..TAT......G..AG.A.....T.....TA.TG....G...G..A.............CG.....A.... MG570408.1_Notropis_bifrenatus_v ..T.....C...AT......C..AG.T.....T.....TATT..T......G.GA.......A.....CG.T..TA.A.. MG570413.1_Notropis_heterolepis_ ........G...AT......G..AG.A.....C..G..T..TG........G..A.......AGC...GG.AG.TA.... MG570416.1_Rhinichthys_obtusus_v ........G.....G.........G...CG.........C.T.........A.G...........T.....T..TATT.. MG570417.1_Rhinichthys_obtusus_v ........G.....G.........G...CG.........C.T.........A.G...........T.....T..TATT.. MG570420.1_Pimephales_notatus_vo ...........TATG........AG.T.....T.....T.TTG........G..A.......A.....CG.T..TA.T.. MG570443.1_Notropis_hudsonius_is ........G..TAT.........AG.T..G..T..G..CA...........A.G......T.G.....GG.A...A.G.. MG570444.1_Rhinichthys_atratulus ............CT.......T...C...G.....G..CCTT.........A.G........T..T..G..T.CTATT.. MG570445.1_Rhinichthys_atratulus ............CT.......T...C...G.....G..CCTT.........A.G........T..T..G..T.CTATT.. MG570447.1_Luxilus_cornutus_isol ........G...ATG..G.....A..T.....T..G..T.TT.........G..A.......A..G..GG.T..TA.T.. MG570449.1_Luxilus_cornutus_isol ........G...ATG..G.....A..T.....T..G..T.TT.........G..A.......A..G..GG.T..TA.T.. MG570450.1_Pimephales_notatus_is ...........TATG........AG.T.....T.....T.TTG........G..A.......A.....CG.T..TA.T.. MG570451.1_Notropis_bifrenatus_i ..T.....C...AT......C..AG.T.....T.....TATT..T......G.GA.......A.....CG.T..TA.A.. MG570453.1_Exoglossum_maxillingu ........T....T.........TG.............CC...........A.......T..T..C..G..T..TCTT.. MG570454.1_Pimephales_promelas_i ........G..TAT.........A.....G..C.....TATTG.T..T..GG..A.....T.GT.....G.T..T..T.. MG570455.1_Notropis_atherinoides ........G...ATG..G..G..A..T.....T..G..TAT.G.......GG.GA.......A..G..GG.T..TA.T.. MG570456.1_Notropis_atherinoides ........G...ATG..G..G..AG.T.....T..G..TA..G........G.GA.......A..G..GG.T..TA.T.. MG570457.1_Pimephales_notatus_is ...........TATG........AG.T.....T.....T.TTG........G..A.......A.....CG.T..TA.T.. MG570458.1_Pimephales_notatus_is ...........TATG........AG.T.....T.....T.TTG........G..A.......A.....CG.T..TA.T.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ........G..TAT.........GG.A.....C.....TATTG.T......G.CA.......G......G.....A.... MT364325.1_Hybognathus_amarus_mi ........G..TAT.........AG.G.....T.....T.TA.........G.G..G.....AG.....G.T..TA.... MT501368.1_Gila_cypha_isolate_SN ........C....T..........G.T....T......TAT....T................T..C..G..G...AT... MT501369.1_Notropis_simus_pecose ........G..TATC.....G..AG.T..G..T..G..CATTG........G.G........G.....TG....TA.T.. MT501378.1_Hybognathus_amarus_is ........G..TAT.........AG.G.....T.....T.TA.........G.G..G.....AG.....G.T..TA.... MT501385.1_Notropis_jemezanus_vo ........G...A.C..G.....AG.T.....T..G..TA..G.......GG.G..G.....G..G..GG.TG.TA.T.. MT501391.1_Rhinichthys_osculus_i ..T.....G...A.C..G..CT.T..............C............A..........T..C..G..T...ATT.. MT667239.1_Rhinichthys_osculus_t ..T.....G...G.C..G..C..T..............C............G..........T..C..G..T...ATT.. MT667242.1_Luxilus_cornutus_vouc ........G...ATG..G.....A..T.....T..G..T.TT.........G..A.......A..G..GG.T..TA.T.. MW300340.1_Hybognathus_placitus_ ......T....AAT.........AG.A..G..T..G..CA.TG........G..A.......AGCG..GG.T...A.... MW300341.1_Hybognathus_placitus_ ......T....AAT.........AG.A..G..T..G..CA.TG........G..A.......AGCG...G.T...A.... NC_013763.1_Mylocheilus_caurinus ...C................GT..G....G.....G..C.G......G..GG.GATG.....T..C.....T..TAT... NC_033926.1_Opsopoeodus_emiliae_ .....T.....AATG....T...AG.T.....T.....CA..C..T.....A..A.......A.....T..T..T..... NC_037008.1_Notropis_chalybaeus_ ........G..TAT......G..AG.A.....T.....TA.TG....G...G..A.............CG.....A.... NC_037009.1_Notropis_heterolepis ........G...AT......G..AG.A.....C..G..T..TG........G..A.......AGC...GG.AG.TA.... NC_037010.1_Rhinichthys_obtusus_ ........G.....G.........G...CG.........C.T.........A.G...........T.....T..TATT.. NC_037014.1_Notropis_hudsonius_i ........G..TAT.........AG.T..G..T..G..CA...........A.G......T.G.....GG.A...A.G.. NC_037015.1_Exoglossum_maxilling ........T....T.........TG.............CC...........A.......T..T..C..G..T..TCTT.. NC_054086.1_Ptychocheilus_lucius ........C....T..........G.T....T......CAT....T.G......A.......T..T.....GC..AT... NC_054257.1_Gila_cypha_isolate_S ........C....T..........G.T....T......TAT....T................T..C..G..G...AT... NC_054259.1_Gila_nigrescens_isol ........C....T..........G.T....T......C.T....T................T..C..G......AT... NC_054260.1_Hybognathus_amarus_i ........G..TAT.........AG.G.....T.....T.TA.........G.G..G.....AG.....G.T..TA.... NC_054262.1_Notropis_jemezanus_v ........G...A.C..G.....AG.T.....T..G..TA..G.......GG.G..G.....G..G..GG.TG.T..T.. Pimephales_notatus_R2S3_________ ...........TAT......G..AG.T.....T.....TA...........G..A.......A.....CG.T..T..T.. Pimephales_tenellus_tenellu_R2S1 ...........TAT...G.....AG.......C.....TA.T...T.G...G..A....T..A.....GG....TA.A.. Pimephales_tenellus_parvice_R2S2 ...........TAT...G.....AG....G..C.....TATT...T.G...G..A.......A.....GG....TA.A.. Pimephales_notatus_R1S1_________ ...........TAT......G..AG.T.....T.....TA...........G..A.......A.....CG.T..T..T.. MG570452.1_Pimephales_promelas_i ........G..TAT.........A.....G..C.....TATTG.T..T..GG..A.....T.GT.....G.T..T..... MG570452.1_Pimephales_promelas_S ........G..TAT.........A.....G..C.....TATTG.T..T..GG..A.....T.AT.....G.T..T..... AB626850.1_Megalobrama_terminali ACTTCTAGTGGCCGTAGAACTTACAGCCATAACCAACAAACAAGTCAAAATTACCCCCACAATCCCTATACACCACTTCT AP010779.1_Mylocheilus_caurinus_ ...C.....A..TA........G.C..T.A......T.C....T.T...GC......T.A..CTT...C......T.... AP011215.1_Gila_sp._1460_mitocho ....T..A.T...A........G.....G....A.GT.....GA.T...........T....CT....C........... AP011263.1_Scardinius_erythropht ...C..G..A..AA........G................G.....T.......T...A....CTT...CG..T.....T. AP011267.1_Algansea_lacustris_mi C.....C..A..TA.G......G......A......T..C.CCTAT..G.CCG.TTT..AG.A.T.CCCTT....T.... AP011268.1_Yuriria_alta_mitochon C.....T.....TA....G...G......AG..T.....C.CCTA.....C.GT.TA..AG.A.T.CCCC.......... AP011273.1_Hybognathus_nuchalis_ C..C..T..A...A........G....T.A.........C.CCTA.....C....TA..A..A.T.CCCT.......... AP011274.1_Couesius_plumbeus_mit .........A...A........G..AA......TG.T..G..GA.T...GC.....A..T..C.T..C.T....G..... AP011275.1_Platygobio_gracilis_m ......T..A...A........G....T.A.........T.C.TA.....C....TA..A..A.T.CCCT.......... AP011277.1_Erimystax_dissimilis_ ......GA.....A....G...G......C......T..C.C.ACT....C.GG.TAT.A.GC.T.CGC...T..T.... AP011279.1_Pimephales_promelas_m C.....T..A...A........G......A...T.....C.CCTA.....C.G..TA..AG.A.TACCCT.......... AP011280.1_Clinostomus_elongatus ...C.....A...A........G....T........T.CG...C.T...........T.A..CTT...C......T.... AP012079.1_Luxilus_chrysocephalu T.....T..A...A....G...G......A.......G.C.CCTA.....C.G..TA..AG.A.T.CCCC.....T.... AP012080.1_Macrhybopsis_gelida_m ......T..A..TA.......CG....T.A......T..C.C.TAT....CCG..TAT.AT.AAT.CCCT.......... AP012083.1_Notropis_atherinoides C.....T.....TA.......CG....T.AG..T.....C.CCTA...G.C.G..TA..AG.A.T.CCCT.......... AP012084.1_Notropis_baileyi_mito C.....C..A...A....G...G......A.........C.CCTA...G.C.G..TA..AG.A.T.CCCT.......... AP012087.1_Cyprinella_galactura_ C.....C.....TA....G...G.G....AG..T....GC.CTTA.....C..A.TA..A..A.T..CCC.......... AP012088.1_Hybopsis_lineapunctat C.....T..A...A........G......A...T.....C.CTTA.....C.G..TT..A..AAT..TCC.......... AP012090.1_Luxilus_cornutus_mito C.....T......A.G..G...G......A...T..T..T.CTTA...G.CGG..TA..A..G.T.CTCC..T..T.... AP012091.1_Lythrurus_ardens_mito C.....T......A........G....T.A.........C.CCTA.....C.G..TAT.A..A.T.CCCT..T....... AP012092.1_Lythrurus_fumeus_mito C.....T..A...A........G....T.A......T..C.CTTA...G.CC...TA..A..ATT.CCCT.......... AP012093.1_Lythrurus_lirus_mitoc C.....T.....TA.G......G......AG........C.CTTA...G.CGG..TAT.AG.A.T.CCCT.......... AP012094.1_Lythrurus_umbratilis_ C.....T......A........G....T.A.........C.CCTA.....C.G..TAT.A..A.T.CCCC..T....... AP012095.1_Macrhybopsis_meeki_mi ......T..A..TA........G....T.A...T..T..C.CTTA.....CCG..TAT.A..AAT.CCCT.....T.... AP012097.1_Notropis_bifrenatus_m T.....T..A...A........G......A......T..C.CTTA.....CC...TA..A..A.T..CCT..T....... AP012098.1_Pimephales_sp._MCZunc T.....T..A..GA........G......A......T..C.CTTA...G.C...TTA..A..A.T.CCCT........T. AP012100.1_Notropis_telescopus_m C.....TA.C..TA........G....T.A........GT.CCTA.....C.G..TA..AG.G.T.CCCC.......... AP012101.1_Pimephales_notatus_mi T.....T..A...A........G......A......T..C.CTTA...G.C...TTA..A..A.T.CCCC........T. AP012102.1_Pimephales_vigilax_mi C.....T.....TA........G......A...A..T..C.CTTAT....C.T.TTA..A..A.A.CTCT.......... AP012103.1_Pogonichthys_macrolep ...C..G.....TA........G.C..T.AGG....T.C....T.T...GCCG....T.A..---..TC........... AP012106.1_Richardsonius_balteat G..C.....A...A........G....T..........C..CGC.T........T..T.A.G.TT...C......T.... AP012108.1_Notropis_chrosomus_mi T..C..C......A........G....T.A......T..C.CCTAT....C.G..TA..A..G.T.CCCC.......... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ C.....T.....TA........G......A...A..T..C.CTTAT....C.T.TTA..A..A.A.CTCT.......... Pimephales_vigilax_R1S3_________ C.....T.....TA........G......A...A..T..C.CTTAT....C.T.TTA..A..A.A.CTCT.......... DQ536429.1_Notropis_stramineus_m T.....T..A...A.G......G......AG.....T..C.CTTAT....C.G..TT..AG.A.T.CCCC.......... JX910141.1_Squaliobarbus_curricu ....T....A.................A...............A.T.....C.....T........CC............ KC351187.1_Squaliobarbus_curricu ....T....A.................A...............A.T.....C.....T........CC............ KT278765.1_Pimephales_promelas_m C.....T..A...A........G......C...T..T..C.CCTA.....C.G..TA..AG.A.TACCCT.......... KT289925.1_Pimephales_promelas_m C.....T..A...A........G......A...T.....C.CCTA.....C.G..TA..AG.A.TACCCT.......... KT424924.1_Rhinichthys_osculus_m ............TA.......CG......C.........C.C.ACT....C.G..TAT.AGGC.T..GC......T..T. KU200257.1_Chanodichthys_ilishae .............A.......C..............T.............................C...........T. MF972070.1_Siphateles_bicolor_mo G...T..A.T..TA........G..........T..T........T.....C..A..T....C.T...C........... MG570407.1_Notropis_chalybaeus_v T.....T..A...A........G....T.A.........C.CTTA.....C.GT.TA..A..A.T.CCCC.......... MG570408.1_Notropis_bifrenatus_v T.....T..A...A........G......A......T..C.CTTA.....CC...TA..A..A.T..CCT..T....... MG570413.1_Notropis_heterolepis_ C.....T.....TA........G......AG.....T..C.CTTA.....C.G..TA..A..A.T.CCCC.......... MG570416.1_Rhinichthys_obtusus_v ......C.....TA.......CG....G.CG........C.C..C...G.CCT...A..AGGCGT.AGCG.......... MG570417.1_Rhinichthys_obtusus_v ......C.....TA.......CG....G.CG........C.C..C...G.CCT...A..AGGCGT.AGCG.......... MG570420.1_Pimephales_notatus_vo T.....T..A..GA........G......A......T..C.CTTA...G.C...TTA..A..A.T.CCCT........T. MG570443.1_Notropis_hudsonius_is C..C..T..A...A.G......G......A......T..C.CTTAT....C.G.TTA.GGT.A.T.CTCT.......... MG570444.1_Rhinichthys_atratulus ......T..A..TA.......CG....T.CG.......GC.C..C.....C.C...AT.A.GCTT.AGC...T....... MG570445.1_Rhinichthys_atratulus ......T..A..TA.......CG....T.CG.......GC.C..C.....C.C...AT.A.GCTT.AGC...T....... MG570447.1_Luxilus_cornutus_isol C.....T......A....G...G......A......T..C.CTTA...G.CGG..TA..A..G.T.CTCC..T..T.... MG570449.1_Luxilus_cornutus_isol C.....T......A....G...G......A......T..C.CTTA...G.CGG..TA..A..G.T.CTCC..T..T.... MG570450.1_Pimephales_notatus_is T.....T..A..GA........G......A......T..C.CTTA...G.C...TTA..A..A.T.CCCT........T. MG570451.1_Notropis_bifrenatus_i T.....T..A...A........G......A......T..C.CTTA.....CC...TA..A..A.T..CCT..T....... MG570453.1_Exoglossum_maxillingu ......GA.....A....G...G......C......T..C.C.ACT....C.GG.TAT.A.GC.T.CGC...T..T.... MG570454.1_Pimephales_promelas_i C.....T..A...A........G......A...T.....C.CCTA.....C.G..TA..AG.A.TACCCT.......... MG570455.1_Notropis_atherinoides C.....T.....TA....G..CG....T.AG..T.....C.CCTA...GGC.G..TA..AG.A.T.CCCT.......... MG570456.1_Notropis_atherinoides C.....T.....TA.......CG....T.AG..T.....C.CCTA...G.C.G..TA..AG.A.T.CCCT.......... MG570457.1_Pimephales_notatus_is T.....T..A..GA........G......A......T..C.CTTA...G.C...TTA..A..A.T.CCCT........T. MG570458.1_Pimephales_notatus_is T.....T..A..GA........G......A......T..C.CTTA...G.C...TTA..A..A.T.CCCT........T. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v T.....C......A........G......A......T..C.CTTA.....C.G..TA..A..A.T.CCCC.......... MT364325.1_Hybognathus_amarus_mi C.....T..A...A........G......A.........C.CCTA.....C....TA..A..ATT.CCCT.......... MT501368.1_Gila_cypha_isolate_SN ....T..A.T...A........G..........T..T......A.T..............GGCT....CG.......... MT501369.1_Notropis_simus_pecose T.....T......A........G......A......T..C.CCTA...G.CCG..TT..AG.AAT.CCCT.......... MT501378.1_Hybognathus_amarus_is C.....T..A...A........G......A.........C.CCTA.....C....TA..A..ATT.CCCT.......... MT501385.1_Notropis_jemezanus_vo C.....T.....TA.......CG......AG..A.....C.CCTA.....C.G..TA..AG.A.T.CCCC.......... MT501391.1_Rhinichthys_osculus_i ......G......A........G.G....C.........C.CG.CT....C....TAT.A.GC.T..GCC.....T..T. MT667239.1_Rhinichthys_osculus_t ......G......A........G.G....C.........C.CG.CT....C....TAT.A.GC.T..GCC.....T..T. MT667242.1_Luxilus_cornutus_vouc C.....T......A....G...G......A......T..C.CTTA...G.CGG..TA..A..G.T.CTCC..T..T.... MW300340.1_Hybognathus_placitus_ C.....T..A..TA........G.G..T.AG.....TGGC.CTTA.....C..A.TA..A..G.T.CCCT.......... MW300341.1_Hybognathus_placitus_ C.....T..A..TA........G.G..T.AG.....TGGC.CTTA.....C..A.TA..A..G.T.CCCT.......... NC_013763.1_Mylocheilus_caurinus ...C.....A..TA........G.C..T.A......T.C....T.T...GC......T.A..CTT...C......T.... NC_033926.1_Opsopoeodus_emiliae_ C..AT.C..A..TA........G......A...T..T..C.CTTA.....A..T..A..A..A.T.CCCT.....T.... NC_037008.1_Notropis_chalybaeus_ T.....T..A...A........G....T.A.........C.CTTA.....C.GT.TA..A..A.T.CCCC.......... NC_037009.1_Notropis_heterolepis C.....T.....TA........G......AG.....T..C.CTTA.....C.G..TA..A..A.T.CCCC.......... NC_037010.1_Rhinichthys_obtusus_ ......C.....TA.......CG....G.CG........C.C..C...G.CCT...A..AGGCGT.AGCG.......... NC_037014.1_Notropis_hudsonius_i C..C..T..A...A.G......G......A......T..C.CTTAT....C.G.TTA.GGT.A.T.CTCT.......... NC_037015.1_Exoglossum_maxilling ......GA.....A....G...G......C......T..C.C.ACT....C.GG.TAT.A.GC.T.CGC...T..T.... NC_054086.1_Ptychocheilus_lucius .......A.T..TA........G..........T..T.....GA.T......G.......GGCT....C........... NC_054257.1_Gila_cypha_isolate_S ....T..A.T...A........G..........T..T......A.T..............GGCT....CG.......... NC_054259.1_Gila_nigrescens_isol ....T..A.T...A........G..........G..T......A.T........T..T...GCT....C........... NC_054260.1_Hybognathus_amarus_i C.....T..A...A........G......A.........C.CCTA.....C....TA..A..ATT.CCCT.......... NC_054262.1_Notropis_jemezanus_v C.....T.....TA....G..CG......AG..A.....C.CCTA.....C.G..TA..AG.A.T.CCCC.......... Pimephales_notatus_R2S3_________ C.....T..A..TA........G......A......T..C.CCTA...G.C...TTA..A..A.T.CCCT........T. Pimephales_tenellus_tenellu_R2S1 T.....T..A...A........G......A...T.....C.CCTA...G.C.G..TA..A..A.T..CCT.......... Pimephales_tenellus_parvice_R2S2 T.....T..A...A........G......A...T.....C.CTTA...G.C.G..TA..A..A.T..CCT.......... Pimephales_notatus_R1S1_________ C.....T..A..TA........G......A......T..C.CCTA...G.C...TTA..A..A.T.CCCT........T. MG570452.1_Pimephales_promelas_i C.....T..A...A........G......A...T.....C.CCTA.....C.G..TA..AG.A.TACCCT.......... MG570452.1_Pimephales_promelas_S C.....T..A...A........G......A...T.....C.CCTA.....C.G..TA..AG.A.TACCCT.......... AB626850.1_Megalobrama_terminali CAAACATGTTAGGATACTTCCCCGCAACAATCCACCGACTCCCTCCCAAACTCAACCTAACCCTAGGACAATCAATCGCC AP010779.1_Mylocheilus_caurinus_ ....T..AC....G............CT.G.A.........T....A..GGC.........T..C.....G..GGCT... AP011215.1_Gila_sp._1460_mitocho ....T...C.G..T..T.....T...CTT..T.....G...T....G...GC......G..TT..........GGCT... AP011263.1_Scardinius_erythropht .......AC.......T..T..T...CT.G.A........TT.C..A...GC..................G...G.T..A AP011267.1_Algansea_lacustris_mi ....T...C.G.....T......T..TT...A.........T.C..A...GC..G....GTT..T..........C.... AP011268.1_Yuriria_alta_mitochon ....T..AC.......T..T...T..TT...G.........T.C..G...GCT.G....GT...T..........CT... AP011273.1_Hybognathus_nuchalis_ ........C.............TT..TT...A.........T.C......GCT.G....GTA..C....G.....CT..T AP011274.1_Couesius_plumbeus_mit .C.....AC.......T.....T...CT.G.T.....G...TT...G..GGCT..T...........C.G.....C...T AP011275.1_Platygobio_gracilis_m ....T...C....C........TT..TT...G.....G...T.C..A..GGC..G...GGT...C....GG..T.C.... AP011277.1_Erimystax_dissimilis_ ....T...C.......T.....T...TT.G.A.........T.A..A...A.A.C.....TT............GCT..T AP011279.1_Pimephales_promelas_m .G..T..AC.............TT..TTG..A.....G...T.C......GCT.G....GT...C....G.....CT... AP011280.1_Clinostomus_elongatus ....T..AC....G..T..T..T...TT...A..T......T....A...GCT.....................GCT... AP012079.1_Luxilus_chrysocephalu .G..T..AC.G..G.........T..TT.G.A.........T.C..T..GGCT.G.....T...C....G.....CT..T AP012080.1_Macrhybopsis_gelida_m ....T..A........T..T..AT..TT...A..T......T.C..A...GC..G......T..C....G......T..T AP012083.1_Notropis_atherinoides .G..T..................T..TT...A.....G...T.C..A...GC..G.....T...G....G.....CT... AP012084.1_Notropis_baileyi_mito ....T..A.....G........TT..TT...A.........T.C..A...GC..GT...GT...T....G.....CT..T AP012087.1_Cyprinella_galactura_ .C..T...C.G.....T.....TT..TT.G.A..T......T.C.....GAC..GT..TGT........GG..G.C.... AP012088.1_Hybopsis_lineapunctat .......AC..........T..TT..TT...A.........T.C..A..GGC..G.....TT..C.........GGT... AP012090.1_Luxilus_cornutus_mito ....T..AC....G........TT..TT.G.A.........T.C..A...GCT.G....GT...C....G.....CT..T AP012091.1_Lythrurus_ardens_mito .T..T...C....G........TT.GTT...A.........T.C..A...GCT.G...GGTT..G..G.G.....CT... AP012092.1_Lythrurus_fumeus_mito .C.....A...............T..TT...A.........T.C...C..GCT.G....GTT.......G.....CT... AP012093.1_Lythrurus_lirus_mitoc .T..T...C....C..T.....TT.GTTG..A.........T.C..T...GCT.G...GGT...G..G.G.....CT... AP012094.1_Lythrurus_umbratilis_ .T..T...C....G........TT.GTT...A.........T.C..A...GCT.G...GGT...G..G.G.....CT... AP012095.1_Macrhybopsis_meeki_mi ....T.................AT..TT...A..T......T....A...GC..G....GT...............T... AP012097.1_Notropis_bifrenatus_m ....T..A.....G.........T..TT...A.....C..AT....A..GGCT.GT....TT..C....G.....CT..T AP012098.1_Pimephales_sp._MCZunc .......A.....G........TT..TT...A..T......T.C..A...GC..G...TGT...T....G...T.C...T AP012100.1_Notropis_telescopus_m ....T..A.....C........TT..TT...A.........T....G...GCT.G...GGT...C....G.....CT..T AP012101.1_Pimephales_notatus_mi .......A.....G........TT..TT...A.........T.C..A...GC..G...TGT...T....G...T.C...T AP012102.1_Pimephales_vigilax_mi .C.....A...............T..TT.G.A..T......T.C..T...ACT.G....GTT..T..........CT... AP012103.1_Pogonichthys_macrolep .......AC.................TT...A.........T....A..GAC..G......T..C.........GCT... AP012106.1_Richardsonius_balteat ....T...C.G..G..T.....TA..TT...G.........T.A..A...GC.GG....G...CC.........GCT... AP012108.1_Notropis_chrosomus_mi ....T..A..G..G........TT..TT.G..........TT.C..A...GCT.G....GT...T....G.....CT..T AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .C.....A...............T..TT.G.A..T......T.C..T...ACT.G....GTT..T..........CT... Pimephales_vigilax_R1S3_________ .C.....A...............T..TT.G.A..T......T.C..T...ACT.G....GTT..T..........CT... DQ536429.1_Notropis_stramineus_m ....T...C....G.....T..TT.GTT...A.....G...T.C......ACT.G.T..GT...T..G.G.....CT..T JX910141.1_Squaliobarbus_curricu .......AC..................T...T...........C..T................................. KC351187.1_Squaliobarbus_curricu .......AC..................T...T...........C..T................................. KT278765.1_Pimephales_promelas_m ....T..AC.............TT..TTGT.A.........T.C......GCT.G.....T...T....G.....CT..T KT289925.1_Pimephales_promelas_m .G..T..AC....G........TT..TTGT.A.........T.C......GCT.G....GT........G.....CT..T KT424924.1_Rhinichthys_osculus_m ....T..AC.C..G........T...CTTG.A.....GT..T.C..A..GGC..G...G.T...C.....G..CGCT... KU200257.1_Chanodichthys_ilishae .......AC....G.............T........................T...T.................G..... MF972070.1_Siphateles_bicolor_mo ..........G..C..T.....T...CT..CA.....GG..T....A.......GT.....TT.G..G........T... MG570407.1_Notropis_chalybaeus_v .......AC....G..T.....TT..TT...A.........T.C..T..GGCT.GT........C....G.....CT... MG570408.1_Notropis_bifrenatus_v ....T..A.....G.........T..TT...A.....C..AT....A..GGCT.GT....TT..C....G.....CT..T MG570413.1_Notropis_heterolepis_ ....T..AC....G........TT..TT...A........TT.A..A...GCT.G...C.T...T..G.G.....CT... MG570416.1_Rhinichthys_obtusus_v ....T..AC....G........T...TTGG.G.....C...T.C..A...GC..G...GGT.A.C.....G...GCT... MG570417.1_Rhinichthys_obtusus_v ....T..AC....G........T...TTGG.G.....C...T.C..A...GC..G...GGT.A.C.....G...GCT... MG570420.1_Pimephales_notatus_vo .......A.....G........TT..TT...A..T......T.C..A...GC..G...TGT...T....G...T.C...T MG570443.1_Notropis_hudsonius_is .............G..T.....TT..TT...A.....G...T.C..A..GGC..G.....TTG.C.....G....A.... MG570444.1_Rhinichthys_atratulus ....T..AC.............T...TT.G.G.....G...T.C..A...GC..G...GGT...C.....G...GCT... MG570445.1_Rhinichthys_atratulus ....T..AC.............T...TT.G.G.....G...T.C..A...GC..G...G.T...C.....G...GCT... MG570447.1_Luxilus_cornutus_isol ....T..AC....G........TT..TT.G.A.........T.C..A...GCT.G....GT...C....G.....CT..T MG570449.1_Luxilus_cornutus_isol ....T..AC....G........TT..TT.G.A.........T.C..A...GCT.G....GT...C....G.....CT..T MG570450.1_Pimephales_notatus_is .......A.....G........TT..TT...A..T......T.C..A...GC..G...TGTT..T....G...T.C...T MG570451.1_Notropis_bifrenatus_i ....T..A.....G.........T..TT...A.....C..AT....A..GGCT.GT....TT..C....G.....CT..T MG570453.1_Exoglossum_maxillingu ....T...C.......T.....T...TT.G.A.........T.A..A...A.A.C.....TT............GCT..T MG570454.1_Pimephales_promelas_i .G..T..AC.............TT..TTGT.A.........T.C......GCT.G....GT........G.....CT..T MG570455.1_Notropis_atherinoides .G..T..................T..TT...A.....G...T.C..A...GC..G.....T...G..G.G.....CT... MG570456.1_Notropis_atherinoides .G..T..................T..TT...A.....G...T.C..A...GC..G.....T...G....G.....CT... MG570457.1_Pimephales_notatus_is .......A.....G........TT..TT...A..T......T.C..A...GC..G...TGT...T....G...T.C...T MG570458.1_Pimephales_notatus_is .......A.....G........TT..TT...A..T......T.C..A...GC..G...TGT...T....G...T.C...T MK421554.1_Parabramis_pekinensis ...........................................C.................................... MT333789.1_Notropis_lutipinnis_v ....T..A..............TT..CT...A........TT.C..A...GCT.G....GT...T..G.G.....CT..T MT364325.1_Hybognathus_amarus_mi .......AC.............TT..TT...A.........T....T...GCT.G....CTA..C....G.....CT..T MT501368.1_Gila_cypha_isolate_SN ....T..AC.G..C..T.....T...CT...T.........T....A...GC......C..TT....G......GCT... MT501369.1_Notropis_simus_pecose .G..T..AC....G..T.....TT.CTTG..A.....G...T.C..G...GCT.GT..G.T...T..G.G.....CT... MT501378.1_Hybognathus_amarus_is .......AC.............TT..TT...A.........T....T...GCT.G....CTA..C....GG....CT..T MT501385.1_Notropis_jemezanus_vo .G..T...C....G.........T.GTT...A.....G...T.C..A...GC..G....GT...G....G.....CT..T MT501391.1_Rhinichthys_osculus_i .G.....AC.C..G........T...TT...G.........A.C..A..GGC..G...G.T...C.....G...GC.... MT667239.1_Rhinichthys_osculus_t .G.....AC.C..G........T...TT...G.........T.C..A..GGC..G...G.T...C.....G...GCT... MT667242.1_Luxilus_cornutus_vouc ....T..AC....G........TT..TT.G.A.........T.C..A...GCT.G....GT...C....G.....CT..T MW300340.1_Hybognathus_placitus_ ......................TT..TT...G.....G...T....G..GGCT.G....GT...T....G.....CT... MW300341.1_Hybognathus_placitus_ ......................TT..TT...G.....G...T....A..GGCT.G....GT...T....G.....CT... NC_013763.1_Mylocheilus_caurinus ....T..AC....G............CT.G.A.........T....A..GGC.........T..C.....G..GGCT... NC_033926.1_Opsopoeodus_emiliae_ .C..T..A...........T..TT..TT...T.........T.C..A..GTCT.G.....T...T....GG....CT... NC_037008.1_Notropis_chalybaeus_ .......AC....G..T.....TT..TT...A.........T.C..T..GGCT.GT........C....G.....CT... NC_037009.1_Notropis_heterolepis ....T..AC....G........TT..TT...A........TT.A..A...GCT.G...C.T...T..G.G.....CT... NC_037010.1_Rhinichthys_obtusus_ ....T..AC....G........T...TTGG.G.....C...T.C..A...GC..G...GGT.A.C.....G...GCT... NC_037014.1_Notropis_hudsonius_i .............G..T.....TT..TT...A.....G...T.C..A..GGC..G.....TTG.C.....G....A.... NC_037015.1_Exoglossum_maxilling ....T...C.......T.....T...TT.G.A.........T.A..A...A.A.C.....TT............GCT..T NC_054086.1_Ptychocheilus_lucius .......AC....C..T.........CT...T.........T....A...GC.........TT....G......GCT... NC_054257.1_Gila_cypha_isolate_S ....T..AC.G..C..T.....T...CT...T.........T....A...GC......C..TT....G......GCT... NC_054259.1_Gila_nigrescens_isol .G.....AC....C..T.....T...CT...T.........T....A...GC......G..TT..........GGCT... NC_054260.1_Hybognathus_amarus_i .......AC.............TT..TT...A.........T....T...GCT.G....CTA..C....G.....CT..T NC_054262.1_Notropis_jemezanus_v .G..T...C....G.........T.GTT...A.....G...T.C..A...GC..G....GT...G..G.G.....CT..T Pimephales_notatus_R2S3_________ ................T......T..TT...A..T......T.C..G...GCT.G...T.T...T..........C...T Pimephales_tenellus_tenellu_R2S1 ....T..A..............TT..TT.G.A.........T.C...C..GCT.G.....TT..C....G.....CT..T Pimephales_tenellus_parvice_R2S2 ....T..A..............TT..TT.G.A.........T.C...C..GCT.G.....TT..C....G.....CT..T Pimephales_notatus_R1S1_________ ................T......T..TT...A..T......T.C..A...GCT.G...T.T...T..........C...T MG570452.1_Pimephales_promelas_i .G..T..AC.............TT..TTGT.A.........T.C......GCT.G....GT........G.....CT..T MG570452.1_Pimephales_promelas_S .G..T..AC.............TT..TTGT.A.....G...T.C......GCT.G....GT...C....G.....CT... AB626850.1_Megalobrama_terminali ACTAAACTTGACCAAACATGACTTGAAATCACGGGACCAAAAGGACTAGCACTAACCCAAATAATAATATCAAAAGTTAC AP010779.1_Mylocheilus_caurinus_ ..C.....A...........GT..C...CTG.A..C............A.G..T..A..G..G..G..GG.G...A.A.T AP011215.1_Gila_sp._1460_mitocho ..C..G.....T.........T..C.G.CT..A...........G........C..............GG.G...A.ACT AP011263.1_Scardinius_erythropht ....................GT.CC...CTG.C..G.........T.GA.G..C..T........G..GG.....A.AGT AP011267.1_Algansea_lacustris_mi ........C.....G..C........G..TG.A..C.....G.CGA..A....T..A...G....GC..G..C....A.T AP011268.1_Yuriria_alta_mitochon .................C......C....TG.A..T.....GTTGG.CA.C..T........G..GT.GG..C..A.A.T AP011273.1_Hybognathus_nuchalis_ .................C............G.A..C.....GTC.A.CA.T..C........G...T..G..C..ACAGT AP011274.1_Couesius_plumbeus_mit ..C..............G..GT..AGT.CTG.C..G.....G......T.G..TG....G..G..G..GG....GA.G.T AP011275.1_Platygobio_gracilis_m ..C.....C........T......C.G...G.A..C......TCGG..A.T..C..A.........T.GG..C..A.AGT AP011277.1_Erimystax_dissimilis_ ........C........G......C...CTG....C........GA..T....T..A........G...G.....A.A.T AP011279.1_Pimephales_promelas_m ..G.....C..T.....C............GTA.........TC.A.TA.T..T..T.....GG..C..G..C....CGT AP011280.1_Clinostomus_elongatus .....G........G......T..C...CTG.A..C.........T..A....T...............G....GA.A.T AP012079.1_Luxilus_chrysocephalu .....G..C........C.....CC....TG.A..T......TC.G.CA.T..TG.......G..GT..G..C..ACAGT AP012080.1_Macrhybopsis_gelida_m .................C...TA.C...CTG.A..C.......C.A.GA.TT.CT.A.........T..G..C.CA.AGT AP012083.1_Notropis_atherinoides ........C........C..G...C....TG.A..C.....GTCGA.CA.T..T........G...C..G.GC.G..GGT AP012084.1_Notropis_baileyi_mito .................T...........TT.A..C.......CGA.CA.T..C............T..G.CC..A.A.T AP012087.1_Cyprinella_galactura_ .................C...........T.....C......TC.A.TA.C...........G..GC..G..C.GACAGT AP012088.1_Hybopsis_lineapunctat ..G...T..........C...........TT.A..C......TCGT.CA.T..T............T..G.CC.GACACT AP012090.1_Luxilus_cornutus_mito ........C........C..G...C....TG....T......TC.A.CA.T..T........G...T.GG.GC..A.AGT AP012091.1_Lythrurus_ardens_mito .................C......C.T..TG.A..T......TCGA.TA.C..T...........GT..G.GC..ACA.T AP012092.1_Lythrurus_fumeus_mito .....G...........C..G...C.....G.A..T.....GTCCA.CA.TT.T............C..G.GC...CAGT AP012093.1_Lythrurus_lirus_mitoc .................C......C.T..TG....C...C..TC.A.T..C..C........G..GC..G.GC...CA.T AP012094.1_Lythrurus_umbratilis_ .................C......C.T..TG.A..T.....GTCGA.TA.C..T...........GT..G.GC..ACA.T AP012095.1_Macrhybopsis_meeki_mi .................C...TA.C....T..A..C.......C.A.TA.T..TC.A.....T...C..G..C.TA.AGT AP012097.1_Notropis_bifrenatus_m .................C......C....TG.A..T......TC.A.CA.T..T..G............G.GC..A.AGT AP012098.1_Pimephales_sp._MCZunc .....G.......................TG.A.........TC.A.TA.C..C............C..G.CC..A.GGT AP012100.1_Notropis_telescopus_m .....G...........C...........T..T..T......TC.A.TA.T..T........G...T..G.CC....GGT AP012101.1_Pimephales_notatus_mi .....G....................G..TGTA.........TC.A.TA.C..T............C..G.CC..A.AGT AP012102.1_Pimephales_vigilax_mi .....G..C........C...T.......TG.A..T......TT.A.TA.TT.T.....G..T...C..G..C..A...T AP012103.1_Pogonichthys_macrolep ..C.....A...........GT.CC...CTG.A..C............A....T..G..G.........G.....A.A.T AP012106.1_Richardsonius_balteat .....G...........G...T.CC..GCTG.A..C.....G.....GA....C..A........G..GG.....A.A.T AP012108.1_Notropis_chrosomus_mi .................C...........TG.A..C......TC.A.CA.T..T...........GC.CG.TC..ACAGT AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .....G..C........C...T.......TG.A..T......TT.A.TA.TT.T.....G..T...C..G..C..A...T Pimephales_vigilax_R1S3_________ .....G..C........C...T.......TG.A..T......TT.A.TA.TT.T.....G..T...C..G..C..A...T DQ536429.1_Notropis_stramineus_m .....G..C........G..G........T..A..T..G..GTCGA.CA.T..T..T..G..G...T..G.CC..A.AGT JX910141.1_Squaliobarbus_curricu .......................C...G.T..A..G..........................G............A.... KC351187.1_Squaliobarbus_curricu .......................C...G.T..A..G..........................G............A.... KT278765.1_Pimephales_promelas_m ..G.....C..T.....C........G...GTA........GTC.A.TA.T..T..T........GC.GG..C....CGT KT289925.1_Pimephales_promelas_m ..G.....C..T.....C............GTA.........TC.A.TA.T..T..T......G..C..G..C....CGT KT424924.1_Rhinichthys_osculus_m ......T.A........C......C...CTG.A..C........GA..A....T..A.....G......G....GA.G.T KU200257.1_Chanodichthys_ilishae .....G..C....................T..A..................T.............G.........A.... MF972070.1_Siphateles_bicolor_mo .....G...........G...TA.C.G.CT..C..G.........T.......CGT........C...GG.......ACT MG570407.1_Notropis_chalybaeus_v .................C...........T..A..C......TC.A.TA.T..T............T.GG.TC..A.A.T MG570408.1_Notropis_bifrenatus_v .................C......C....TG.A..T......TC.A.CA.T..T..G............G.GC..A.AGT MG570413.1_Notropis_heterolepis_ .................C......C....TG.A..T......TC.A.CA.T..C...............G..C..A.AGT MG570416.1_Rhinichthys_obtusus_v ........A........C..G...C...CTG.A..T..G......G.......T..G..G......G..G.G.....G.T MG570417.1_Rhinichthys_obtusus_v ........A........C..G...C...CTG.A..T..G......G.......T..G..G......G..G.G.....G.T MG570420.1_Pimephales_notatus_vo .....G.......................TG.A.........TC.A.TA.C..C............C..G.CC..A.GGT MG570443.1_Notropis_hudsonius_is ........G..T.....C......C.G..T..A..C.....G.CCA.TA.T..T..A........GT..G.GC.TA.GTT MG570444.1_Rhinichthys_atratulus .....G..G........C..G...C.G.CTG.A..T........GG..A....T.....G.........G.......GCT MG570445.1_Rhinichthys_atratulus .....G..G........C..G...C.G.CTG.A..T........GG..A....T.....G.........G.......GCT MG570447.1_Luxilus_cornutus_isol .....G..C........C......C....TG....T..G...TC.A.CA.T..T........G...T.GG.GC..ACAGT MG570449.1_Luxilus_cornutus_isol .....G..C........C......C....TG....T..G...TC.A.CA.T..T........G...T.GG.GC..ACAGT MG570450.1_Pimephales_notatus_is .....G.......................TG.A.........TC.A.TA.C..C............C..G.CC..A.GGT MG570451.1_Notropis_bifrenatus_i .................C......C....TG.A..T......TC.A.CA.T..T..G............G.GC..A.AGT MG570453.1_Exoglossum_maxillingu ........C........G......C...CTG....C........GA..T....T..A........G...G.....A.A.T MG570454.1_Pimephales_promelas_i ..G.....C..T.....C............GTA.........TC.A.TA.T..T..T......G..C..G..C....CGT MG570455.1_Notropis_atherinoides ........C........C..G...C....TG.A..C.....GTCGA.CA.T..T........G...C..G.GC.GA.GGT MG570456.1_Notropis_atherinoides ........C........C..G...C....TG.A..C.....GTCGA.CA.T..T........G...C..G.GC.G..GGT MG570457.1_Pimephales_notatus_is .....G.......................TG.A.........TC.A.TA.C..C............C..G.CC..A.GGT MG570458.1_Pimephales_notatus_is .....G.......................TG.A.........TC.A.TA.C..C............C..G.CC..A.GGT MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..C.....C........C........G..T..A..C..G...TC.A.CA.C..T............C.GG.TC...CAGT MT364325.1_Hybognathus_amarus_mi .T......C........C.....C......G.A..C.....GTC.A.CA.T..C........G..GT..G..C..ACAGT MT501368.1_Gila_cypha_isolate_SN ..C..G..G..T.........T..C.G.CT..A..G.................C..........C...GG.....C.ACT MT501369.1_Notropis_simus_pecose .....G..C........C..G.....G..TG....G......TC.A.CA.C..C........G...T.GG.CC.TA.GGT MT501378.1_Hybognathus_amarus_is .T......C........C.....C......G.A..C.....GTC.A.CA.T..C........G..GT..G..C..ACAGT MT501385.1_Notropis_jemezanus_vo ........C........C..G...C.....G.A..T.....GTCGA.CA.T..C.....G......C..G.GC.GA.AGT MT501391.1_Rhinichthys_osculus_i ........G........C......C...CTG....C.....G..GA..A.G..C..A............G.......A.T MT667239.1_Rhinichthys_osculus_t ........G........C......C...CTG....C.....G..GA..A.C..C..A............G.......A.T MT667242.1_Luxilus_cornutus_vouc .....G..C........C......C....TG....T..G...TC.A.CA.T..T........G...T.GG.GC..ACAGT MW300340.1_Hybognathus_placitus_ .....G..C........C..G........T..A..C......TC.A.CA.T..C...........GC..G.GC..ACG.T MW300341.1_Hybognathus_placitus_ .....G..C........C..G........T..A..C......TC.A.CA.T..C...........GC..G.GC..ACGGT NC_013763.1_Mylocheilus_caurinus ..C.....A...........GT..C...CTG.A..C............A.G..T..A..G..G..G..GG.G...A.A.T NC_033926.1_Opsopoeodus_emiliae_ .TA..............C........T..T..T..T..T...TC.A.TA.TT.T...........TT..G.TC..ACACT NC_037008.1_Notropis_chalybaeus_ .................C...........T..A..C......TC.A.TA.T..T............T.GG.TC..A.A.T NC_037009.1_Notropis_heterolepis .................C......C....TG.A..T......TC.A.CA.T..C...............G..C..A.AGT NC_037010.1_Rhinichthys_obtusus_ ........A........C..G...C...CTG.A..T..G......G.......T..G..G......G..G.G.....G.T NC_037014.1_Notropis_hudsonius_i ........G..T.....C......C.G..T..A..C.....G.CCA.TA.T..T..A........GT..G.GC.TA.GTT NC_037015.1_Exoglossum_maxilling ........C........G......C...CTG....C........GA..T....T..A........G...G.....A.A.T NC_054086.1_Ptychocheilus_lucius ..C........T.........T..C...CTG......................CG........TC....G.....A.ACT NC_054257.1_Gila_cypha_isolate_S ..C..G..G..T.........T..C.G.CT..A..G.................C..........C...GG.....C.ACT NC_054259.1_Gila_nigrescens_isol ..C.................GT..C.GGCT..A...........G........C........G.CG..GG.G...A.ACT NC_054260.1_Hybognathus_amarus_i .T......C........C.....C......G.A..C.....GTC.G.CA.T..C........G..GT..G..C..ACAGT NC_054262.1_Notropis_jemezanus_v ........C........C......C.....G.A..T.....GTCGA.CA.T..C.....G......C..G.GC.GA.AGT Pimephales_notatus_R2S3_________ ....................G........TG.A..G......TC.A.TA.T..C............C..G.CC..CAAGT Pimephales_tenellus_tenellu_R2S1 ........C........C........G..TG.A..C......TC.A.CA.TT.C.........G.TC..G..C..ACAGT Pimephales_tenellus_parvice_R2S2 ........C........C........G..TG.A..C......TC.A.CA.TT.C.........G.TC..G..C...CAGT Pimephales_notatus_R1S1_________ ....................G........T..A..G......TC.A.TA.T..C............C..G.CC..CAAGT MG570452.1_Pimephales_promelas_i ..G.....C..T.....C............GTA.........TC.A.TA.T..T..T......G..C..G..C....CGT MG570452.1_Pimephales_promelas_S ..G.....C..T.....C............GTA.........TC.G.TA.T..T..T..G..GG..C..G..C....CGT AB626850.1_Megalobrama_terminali AAGCGACATCCAACGAGGTATAATCAAAACTTACCTAACTATCTTCCTCTTAACCCTAACCCTGGCCATTCTTCTAACTC AP010779.1_Mylocheilus_caurinus_ ..AT.....T..G.....A.....T.....A........C.........C.....AC...TT.A..A..C..C...GTC. AP011215.1_Gila_sp._1460_mitocho ..AT..T.......TG..G.....T.....G..TT....C........T......A.GG....A..GG.C..CT..GT.. AP011263.1_Scardinius_erythropht ...T.....T........A.....T.....A...T....C...............G.G......T....C..C..GGTC. AP011267.1_Algansea_lacustris_mi GG..A..G..TC......A.C...T....AA.T.T....C........TC.....A...T.T.A..AG..GCC....TC. AP011268.1_Yuriria_alta_mitochon ..C.A.T..TTC......A.C...T..G.AA.T.T....C........TC....AA...T.T..A.A...GCC....T.. AP011273.1_Hybognathus_nuchalis_ .GC.A.T..TTC.G....A.C...T....AG.TTT....C........TC.....A...T......AG..GCC....T.. AP011274.1_Couesius_plumbeus_mit ..CT...T...T.GA...A.A......G.TA...T....C..A.....T......AC......C.GGG....C...G... AP011275.1_Platygobio_gracilis_m ....A.T...TC......A.C...T..G.AG.TTT....C........TC.....A.G.T.T.A..A...GCC....T.. AP011277.1_Erimystax_dissimilis_ ..AT..T..TTC......A.C...T.....A..TT....C...C....T......AC...AT.A..A...A.C...G.CA AP011279.1_Pimephales_promelas_m .G.TA.T..TTCG.A...A.CC..T....AG.TTT....C........TC....TA...T.T.A..A...GCC....T.A AP011280.1_Clinostomus_elongatus ..AT..T..T........A.....T.....A........C..T.....T.....TA.G...T..........C...G.C. AP012079.1_Luxilus_chrysocephalu ....A.T..TTC...T..A.C...T..G.AG.TTT....CG.......TC.G...A...T.T....A...GC...G.TC. AP012080.1_Macrhybopsis_gelida_m ...TA.T..TTC......A.C...T....AG.TTT.......T.....T......A.G.T.T.A..AG..AC.T...T.A AP012083.1_Notropis_atherinoides GG..A.TG..TC...G..A.C...T..G.AG.TTT....C........TC.G..TA.G.TTT....A...GCC....T.. AP012084.1_Notropis_baileyi_mito ....A.T..TTC..A...A.C...T..G.AG.TTT....C........TC.G..TA.G.T...A..AG..GCC....T.. AP012087.1_Cyprinella_galactura_ G.C.A.T...TCG.....C.C......G.AG.TTT.G..A........TC.....A...T.T.A.G.G..ACCA...TCT AP012088.1_Hybopsis_lineapunctat GG..A....TAC..A...A.C...T..G.AA.T.T....C........TC.G..T....T.T.A..A...ACCT...TCT AP012090.1_Luxilus_cornutus_mito ....A.T..TTC......A.C......G.AG.TT.....C........TC....TA.G.T.T.A..A...GCC....TC. AP012091.1_Lythrurus_ardens_mito .......C.TTC......A.C........AG.TTT....C..T......C....TA...TTT.A..AG..GCCG.G.T.. AP012092.1_Lythrurus_fumeus_mito GG..A....TTC......A.C...T..G.AG.TTT....C..T......C....TA.G..TT....AG.CGCCG.G.T.. AP012093.1_Lythrurus_lirus_mitoc ....A..C.TTC......A.C...T....AG.TTT....C..T...........TA....TT.A..AG..GCCG...T.. AP012094.1_Lythrurus_umbratilis_ .......C.TTC......A.C........AA.TTT....C..T......C....TA...TTT.A..AG..GCCG.G.T.. AP012095.1_Macrhybopsis_meeki_mi ...TA.T..TTC......A.C...T....AG.TTT.............TC.....A...T.T.A..AG..AC.T...T.A AP012097.1_Notropis_bifrenatus_m .G..A.....TC......A.C...T..G.AA.TTT....A........TC.....A...T.T.AA.A...GCC....T.. AP012098.1_Pimephales_sp._MCZunc .G..A.T...TC......A.C...T..G.AA.T.T....CG.......TC.....A...T.T.A..G...GC.....T.. AP012100.1_Notropis_telescopus_m GG.TA.T..TTC......A.C...T..G.AG.TTT....C........TC....TA...T.T....A...GCC....TC. AP012101.1_Pimephales_notatus_mi .G..A.T...TC...G..A.C...T..G.AA.T.T....C........TC.....AC..T.T.A..G...GCC....T.. AP012102.1_Pimephales_vigilax_mi .G.T..T..TTC......G.....T....AG.T.T....C........T.....TA...TTT.A..T...GC.....T.T AP012103.1_Pogonichthys_macrolep ..AT.....TTC......A..G..T.....A........C..............TAC...TT.A.....C..C....TC. AP012106.1_Richardsonius_balteat ..AT..T..T....A...G.....T.....A........C..T.....T.....TAC....T.A..G..C..C..GGT.. AP012108.1_Notropis_chrosomus_mi .G..A.....TC...G..A.C......G.AA.TTT....C........TC.G..TA...T...A..A...ACC....T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .G.T..T..TTC......G.....T....AG.T.T....C........T.....TA...TTT.A..T...GC.....T.T Pimephales_vigilax_R1S3_________ .G.T..T..TTC......G.....T....AG.T.T....C........T.....TA...TTT.A..T...GC.....T.T DQ536429.1_Notropis_stramineus_m GG.TA....TTC..AG..A.C......G.AG.TTT.G............C....TA.G.T.T.A.....CGCC....TC. JX910141.1_Squaliobarbus_curricu ...T....................T.....C........C.......................A.....C..CT.G.... KC351187.1_Squaliobarbus_curricu ...T....................T.....C........C.......................A.....C..CT.G.... KT278765.1_Pimephales_promelas_m .G.TA.T..TTCG.A...A.CC..T....AG.TTT....C..T.....TC.....A...T.T.A..A...GCC....T.A KT289925.1_Pimephales_promelas_m .G.TA.T..TTCG.A...A.CC..T....AG.TTT....C........TC....TA...T.T.A..A...GCC....T.A KT424924.1_Rhinichthys_osculus_m ..........TC......A.C...T.....A..TT....C........T..G..TA.GG..T....GG........G.C. KU200257.1_Chanodichthys_ilishae .........T..............T.....C...........T......C.......G.....A................ MF972070.1_Siphateles_bicolor_mo ..A.....C.....T...A.....T.....A..TT....C........T......A..G..T.A...G.C..CT..GTC. MG570407.1_Notropis_chalybaeus_v ....A....TTC......A.C......G.AG.TT.....C..T.....TC.....A...T...A..A...ACC....T.. MG570408.1_Notropis_bifrenatus_v .G..A.....TC......A.C...T..G.AA.TTT....A........TC.....A...T.T.AA.A...GCC....T.. MG570413.1_Notropis_heterolepis_ GG..A.T...TC...G..A.C...T..G.AG.TTT....C........TC.....A...T.T....AG.AACC....T.. MG570416.1_Rhinichthys_obtusus_v ..A...T...TC......A.C...T.....A..TT....C........T......ACGG..T....AG....C..GG.C. MG570417.1_Rhinichthys_obtusus_v ..A...T...TC......A.C...T.....A..TT....C........T......ACGG..T....AG....C..GG.C. MG570420.1_Pimephales_notatus_vo .G..A.T...TC......A.C...T..G.AA.T.T....CG.......TC.....A...T.T.A..G...GC.....T.. MG570443.1_Notropis_hudsonius_is GG.......TTC......A.C...T..G.AG.TTT....C........TC....TA...T.T....G...GCC....T.. MG570444.1_Rhinichthys_atratulus G.....T...TC......A.C...T.....A..TT....C........T......A.GG..T.A..GG....C..GG.C. MG570445.1_Rhinichthys_atratulus G.....T...TC......A.C...T.....A..TT....C........T......A.GG..T.A..GG....C..GG.C. MG570447.1_Luxilus_cornutus_isol ....A.T..TTC......A.C......G.AG.TT.....C........TC....TA.G.T.T.A..A...GCC....TC. MG570449.1_Luxilus_cornutus_isol ....A.T..TTC......A.C......G.AG.TT.....C........TC....TA.G.T.T.A..A...GCC....TC. MG570450.1_Pimephales_notatus_is .G..A.T...TC......A.C...T..G.AA.T.T....CG.......TC.....A...T.T.A..G...GC.....T.. MG570451.1_Notropis_bifrenatus_i .G..A.....TC......A.C...T..G.AA.TTT....A........TC.....A...T.T.AA.A...GCC....T.. MG570453.1_Exoglossum_maxillingu ..AT..T..TTC......A.C...T.....A..TT....C...C....T......AC...AT.A..A...A.C...G.CA MG570454.1_Pimephales_promelas_i .G.TA.T..TTCG.A...A.CC..T....AG.TTT....C........TC....TA...T.T.A..A...GCC....T.A MG570455.1_Notropis_atherinoides GG..A.T...TC......A.C...T..G.AG.TTT....C........TC.G..TA...TTT....A...GCC....T.. MG570456.1_Notropis_atherinoides GG..A.T...TC...G..A.C...T..G.AG.TTT....C........TC.G..TA.G.TTT....A...GCC....T.. MG570457.1_Pimephales_notatus_is .G..A.T...TC......A.C...T..G.AA.T.T....CG.......TC.....A...T.T.A..G...GC.....T.. MG570458.1_Pimephales_notatus_is .G..A.T...TC......A.C...T..G.AA.T.T....CG.......TC.....A...T.T.A..G...GC.....T.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .G..A.T..TTC......A.C...T..G.AG.TTT.G..C........TC.G..AA.G.TT..A..AG..ACC......T MT364325.1_Hybognathus_amarus_mi GGC.A.T...TC..A...A.CT..T....AG.TTT.......T.....TC.....A..GT......AG..GCC....T.. MT501368.1_Gila_cypha_isolate_SN G.AT..T.......TG..G.....T.....G..TT....C........T......A..G..T.A..AG.C..CT..GT.. MT501369.1_Notropis_simus_pecose .G..A.T..TTC...G..G.C...T..G.AA.T.T.............TC....TA.GGT.T.A.GA...ACC....... MT501378.1_Hybognathus_amarus_is GGC.A.T...TC..A...A.CT..T....AG.TTT.......T.....TC.....A..GT......AG..GCC....T.. MT501385.1_Notropis_jemezanus_vo GG.TA.T...TC...G..A.C...T..G.AA.T.T....C........TC.G..TA...TTT....A...GCC....T.. MT501391.1_Rhinichthys_osculus_i ..A...T...TC......A.C...T.....A...T....C........TC.....A.G...T....GG....CA..G.C. MT667239.1_Rhinichthys_osculus_t ..A...T...TC......A.C...T.....A...T....C........TC.....A.G...T....GG....CA..G.C. MT667242.1_Luxilus_cornutus_vouc ....A.T..TTC......A.C......G.AG.TT.....C........TC....TA.G.T.T.A..A...GCC....TC. MW300340.1_Hybognathus_placitus_ GGC.A..G..TC......A.C...T..G.AG.TTT....C..T.....TC.G..TAC..T......AG.CACC...GTC. MW300341.1_Hybognathus_placitus_ GGC.A..G..TC......A.C...T..G.AG.TTT....C..T.....TC.G..TAC..T......AG.CACC...GTC. NC_013763.1_Mylocheilus_caurinus ..AT.....T..G.....A.....T.....A........C.........C.....AC...TT.A..A..C..C...GTC. NC_033926.1_Opsopoeodus_emiliae_ ...T.....TTC......C.C...T..G.AG.TTT....C........TC...ATA..GT.T.A..A...A.C....TC. NC_037008.1_Notropis_chalybaeus_ ....A....TTC......A.C......G.AG.TT.....C..T.....TC.....A...T...A..A...ACC....T.. NC_037009.1_Notropis_heterolepis GG..A.T...TC...G..A.C...T..G.AG.TTT....C........TC.....A...T.T....AG.AACC....T.. NC_037010.1_Rhinichthys_obtusus_ ..A...T...TC......A.C...T.....A..TT....C........T......ACGG..T....AG....C..GG.C. NC_037014.1_Notropis_hudsonius_i GG.......TTC......A.C...T..G.AG.TTT....C........TC....TA...T.T....G...GCC....T.. NC_037015.1_Exoglossum_maxilling ..AT..T..TTC......A.C...T.....A..TT....C...C....T......AC...AT.A..A...A.C...G.CA NC_054086.1_Ptychocheilus_lucius G.AT..........T...G...........A..TT....C........T......A..G..T.A..GG.C..CT..GT.. NC_054257.1_Gila_cypha_isolate_S G.AT..T.......TG..G.....T.....G..TT....C........T......A..G..T.A..AG.C..CT..GT.. NC_054259.1_Gila_nigrescens_isol G.AT..T.....G.TG..A.....T.....A..TT....CG.......T......A.GG.......AG.C..CT..GT.. NC_054260.1_Hybognathus_amarus_i GGC.A.T...TC..A...A.CT..T....AG.TTT.......T.....TC.....A..GT......AG..GCC....T.. NC_054262.1_Notropis_jemezanus_v GG.TA.T...TC...G..A.C...T..G.AA.T.T....C........TC.G..TA...TTT....A...GCC....T.. Pimephales_notatus_R2S3_________ .G..A.....TC......A.C...T..G.AA.T......C.....T..TC.G...A...T.T.A..A...GCA....T.. Pimephales_tenellus_tenellu_R2S1 G..TA.T...TC........C...T..G.AG.TTT.G..C........T.....TA...T...A..A...GC.....TC. Pimephales_tenellus_parvice_R2S2 ...TA.T...TC........C...T..G.AA.TTT.G..C........T.....TA...T...A..A...GC.....TC. Pimephales_notatus_R1S1_________ .G..A.....TC......A.C...T..G.AA.T......C.....T..TC.G...A...T.T.A..A...GCA....T.. MG570452.1_Pimephales_promelas_i .G.TA.T..TTCG.A...A.CC..T....AG.TTT....C........TC....TA...T.T.A..A...GCC....T.A MG570452.1_Pimephales_promelas_S .G.TA.T..TTCG.A...A.CC..T....AG.TTT....C........TC....TA...T.T.A..A...GCC....T.A AB626850.1_Megalobrama_terminali TTATTTAAACGGCTCGAAGAGTACCACGACTCAACCCCCGAGTAAGCTCCAACACCACAAGCAAGGTTAAAAGCAACACC AP010779.1_Mylocheilus_caurinus_ ....C.....T..A.....T..G..G.......GA.....G..........G.........T.................T AP011215.1_Gila_sp._1460_mitocho ..........C..C......C....G.....T..G................G...........GT....G.......... AP011263.1_Scardinius_erythropht .C..C..G..T..C...........C....YT..G........G..T..T..T..T..G....GC...........T... AP011267.1_Algansea_lacustris_mi ..T.C..G..A..C.....T..C........T..T........C.A...T.....T.....T..A..C..G......... AP011268.1_Yuriria_alta_mitochon ..........CA.C..G..C.CC........T.GG.....G..T.A.....G...T..T.A..GT....G.....GT..T AP011273.1_Hybognathus_nuchalis_ ..........T..C..G..C..C........T..A........T.....T..T..T.....T.GC..........G...T AP011274.1_Couesius_plumbeus_mit ..........CA.C....C...G........T.GA..T..G..G...........T.....T..T............... AP011275.1_Platygobio_gracilis_m ..........C.....G..C..C..G.....T..A........C.A...T.G...T.....T.G......G..T..T... AP011277.1_Erimystax_dissimilis_ ..........C..C..C..T..T.....G..T..A........C.......G...........GA.....G..A.G.... AP011279.1_Pimephales_promelas_m ..........C.....C.A...C.....G..T...........C.AT..T.G...T.....T.GA....G.........T AP011280.1_Clinostomus_elongatus ..........T........T..T..G........A............................G......G......... AP012079.1_Luxilus_chrysocephalu ..G.......C.....G.CC..C........T..G........T.AT..T.GT........T........G.....T... AP012080.1_Macrhybopsis_gelida_m ..........T........C..C........T.....T.....T.A......T..T..T.AT..C..C........T... AP012083.1_Notropis_atherinoides ..........C.....G..C..C........T..A........T.A.....G...T.....T.G......C..A.G.... AP012084.1_Notropis_baileyi_mito ....C.....C.....G..T.....C.....T..A........T.A...T..T..A.....T..A..C.GG......... AP012087.1_Cyprinella_galactura_ .......G..T........C..C..G..G..T.GG..T.....T.....T.G...A.....T.....C..G.....T... AP012088.1_Hybopsis_lineapunctat ..........C..C.....C..C........T..A........T.AT..T..T..T.....T..A....G......T... AP012090.1_Luxilus_cornutus_mito ..........C.....G.CC..C..G..G..T..G........T........T..T.....T..............T... AP012091.1_Lythrurus_ardens_mito .......G..C..C........C........T.GA........T..T..T.GA..T.....T.GA..A.G.....G.... AP012092.1_Lythrurus_fumeus_mito .......G..C..C.....C..C........T.GG.....G..T.AT..T..G..T.....T.GT..A.GG..T..T... AP012093.1_Lythrurus_lirus_mitoc .......G..C..C.....G..C........T.GA........T.AT..T.GA..T..G..T..A..A.G...T.G.... AP012094.1_Lythrurus_umbratilis_ .......G..C..C........C........T.GA........T..T..T.GA..T.....T.GA..A.G.....G.... AP012095.1_Macrhybopsis_meeki_mi ..........T........C..C........T..T..T.....T.A.........T.....T..T........T...... AP012097.1_Notropis_bifrenatus_m ..........C.....G..C..C..........GA........T.A......T..T..T..T.GA....G...T..T... AP012098.1_Pimephales_sp._MCZunc ....C.....C..........CC.....G..T..A.....G..T.AT..T..T..T.....T..A..C..G....GT..T AP012100.1_Notropis_telescopus_m ..........T..C.....C..C.....G..T..A.....T..T.AT....GT..T.....T.G.....GG......... AP012101.1_Pimephales_notatus_mi ....C.....C..........CC.....G..T..A........T.AT..T..T..T.....T..A..C..G....GT..T AP012102.1_Pimephales_vigilax_mi ....C.....C.....G.....C.....G..T.TA........T.AT..T..T..T..G..T........G.....T... AP012103.1_Pogonichthys_macrolep ..........T..C.....T..G...........A..........................T.G.....G.........T AP012106.1_Richardsonius_balteat ..........T..C.....T..C...........A..A...........T........G....G............T... AP012108.1_Notropis_chrosomus_mi ..........C........T..C........T..G..T..G..T.AT..T..T..G.......GC............... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ....C.....C.....G.....C.....G..T.TA........T.AT..T..T..T..G..T........G.....T... Pimephales_vigilax_R1S3_________ ....C.....C.....G.....C.....G..T.TA........T.AT..T..T..T..G..T........G.....T... DQ536429.1_Notropis_stramineus_m .......G..C........T..T..G..G....GA.....G..T.A.....GT..T.....T.G.....G.........T JX910141.1_Squaliobarbus_curricu ....C.....A...........G..G.......................T.....A.......G...C........T..T KC351187.1_Squaliobarbus_curricu ....C.....A...........G..G.......................T.....A.......G...C........T..T KT278765.1_Pimephales_promelas_m ..........T.....T.A...C........T...........C.AT..T.GT..T.....T.GA....G.........T KT289925.1_Pimephales_promelas_m ..........C.....C.A...C.....G..T...........C.AT..T.G...T.....T.GA..............T KT424924.1_Rhinichthys_osculus_m ..........C........T..C..G..G.....G........C.A...............T..A.....G..T.G.... KU200257.1_Chanodichthys_ilishae ....C.................C........T..G..........................T.GA........T..T..T MF972070.1_Siphateles_bicolor_mo ..........T..C.....GC.G...........A..........C......T........T..C........T.G.... MG570407.1_Notropis_chalybaeus_v ....C.....C........T..C.....G..T..G.....G..C.A...T.....A.....T.GA.....T......... MG570408.1_Notropis_bifrenatus_v ..........C.....G..C..C........T.GA........T.A......T..T..T..T.GA....G...T..T... MG570413.1_Notropis_heterolepis_ ....C.....C.....C..T..C........T.GA........T.A...T..T.....G.....A....G......T... MG570416.1_Rhinichthys_obtusus_v ..........C..C..G..T..T..C.....T..A.....G..C.................T.GA.....G......... MG570417.1_Rhinichthys_obtusus_v ..........C..C..G..T..T..C.....T..A.....G..C.................T.GA.....G......... MG570420.1_Pimephales_notatus_vo ....C.....C..........CC.....G..T..A.....G..T.AT..T..T..T.....T..A..C..G....GT..T MG570443.1_Notropis_hudsonius_is ....C.....C.....C.AC..C.....G..T..G..T..G..C.A...T.....T..G..T.GA........T.GT..T MG570444.1_Rhinichthys_atratulus ..........C..C.....T..C..G.....T..A........C.................T.G.....G.....G.... MG570445.1_Rhinichthys_atratulus ..........C..C.....T..C..G.....T..A........C.................T.G.....G.....G.... MG570447.1_Luxilus_cornutus_isol ..........C.....G.CC..C..G..G..T..A........T.....T.GT..T.....T..............T... MG570449.1_Luxilus_cornutus_isol ..........C.....G.CC..C..G..G..T..A........T.....T.GT..T.....T..............T... MG570450.1_Pimephales_notatus_is ....C.....C..........CC.....G..T..A.....G..T.AT..T..T..T.....T..A..C..G....GT..T MG570451.1_Notropis_bifrenatus_i .......-..C.....G..C..C..........GA........T.A......T..T..T..T.GA....G...T..T... MG570453.1_Exoglossum_maxillingu ..........C..C..C..T..T.....G..T..A........C.......G...........GA.....G..A.G.... MG570454.1_Pimephales_promelas_i ..........C.....C.A...C.....G..T...........C.AT..T.G...T.....T.GA..............T MG570455.1_Notropis_atherinoides ..........C.....G..C..C........T..A........T.A.....G...T.....T.G......C..A.G.... MG570456.1_Notropis_atherinoides ..........C.....G..C..C........T..A........T.A.....G...T.....T.G......C..A.G.... MG570457.1_Pimephales_notatus_is ....C.....C..........CC.....G..T..A.....G..T.AT..T..T..T.....T..A..C..G....GT..T MG570458.1_Pimephales_notatus_is ....C.....C..........CC.....G..T..A.....G..T.AT..T..T..T.....T..A..C..G....GT..T MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .CG.......C........T..T........T.GG........T.A...T..T..A..G..T..A.....G..T...... MT364325.1_Hybognathus_amarus_mi .......G..T..C.....C..C........T..A........T.....T.GT..T.....T..T.....G....G...T MT501368.1_Gila_cypha_isolate_SN ..........T..C......C.G..G........A................GT..........GT....G.......... MT501369.1_Notropis_simus_pecose .......G..C.....G..T..C..........GA........T.A.........G.......G.....GG..T..T... MT501378.1_Hybognathus_amarus_is .......G..T..C.....C..C........T..A........T.....T.GT..T.....T..T..........G...T MT501385.1_Notropis_jemezanus_vo ..........C.....G..C..C.....G..T..G.....C..T.A.....G.........T.G......C.AG.GT... MT501391.1_Rhinichthys_osculus_i .......G..C........T..C..C..G....GA........C.......G.........T.G.........T.GT... MT667239.1_Rhinichthys_osculus_t .......G..C........T..C..C..G....GA........C.................T...........T.GT... MT667242.1_Luxilus_cornutus_vouc ..........C.....G.CC..C..G..G..T..A........T.....T.GT..T.....T..............T... MW300340.1_Hybognathus_placitus_ .......G..T..C..G..C..C........T.GA........T.A...A.GT..T.....T..A....GG....G.... MW300341.1_Hybognathus_placitus_ .......G..T..C.....C..C........T.GA........T.A...A.GT..T.....T..A....G.....G.... NC_013763.1_Mylocheilus_caurinus ....C.....T..A.....T..G..G.......GA.....G..........G.........T.................T NC_033926.1_Opsopoeodus_emiliae_ .......G..T..C.......CT........T..A........T.A...T...........T..A........T..T..T NC_037008.1_Notropis_chalybaeus_ ....C.....C........T..C.....G..T..G.....G..C.A...T.....A.....T.GA.....T......... NC_037009.1_Notropis_heterolepis ....C.....C.....C..T..C........T.GA........T.A...T..T.....G.....A....G......T... NC_037010.1_Rhinichthys_obtusus_ ..........C..C..G..T..T..C.....T..A.....G..C.................T.GA.....G......... NC_037014.1_Notropis_hudsonius_i ....C.....C.....C.AC..C.....G..T..G..T..G..C.A...T.....T..G..T.GA........T.GT..T NC_037015.1_Exoglossum_maxilling ..........C..C..C..T..T.....G..T..A........C.......G...........GA.....G..A.G.... NC_054086.1_Ptychocheilus_lucius ..........T..C......C.............A........G........T........A.GT....G.......... NC_054257.1_Gila_cypha_isolate_S ..........T..C......C.G..G........A................GT..........GT....G.......... NC_054259.1_Gila_nigrescens_isol ..........T..C......C.G..G.....T..G........G...................GT............... NC_054260.1_Hybognathus_amarus_i .......G..T..C.....C..C........T..A........T.....T.GT..T.....T..T.....G....G...T NC_054262.1_Notropis_jemezanus_v ..........C.....G..C..C.....G..T..G.....C..T.A.....G.........T.G......C.AG.GT... Pimephales_notatus_R2S3_________ .C.CC.....C.....G.C...C.....G..T..A........T.AT..T.GT..T.....T..A..C..G....GA... Pimephales_tenellus_tenellu_R2S1 ....C.....T........G..C........T..A........T.AT..T...........T..A........T..T... Pimephales_tenellus_parvice_R2S2 ....C.....T........G..C...........A........T..T..T...........T..A........T..T... Pimephales_notatus_R1S1_________ .C.CC.....C.....G.C...C.....G..T..A........T.AT..T.GT..T.....T..A..C..G....GA... MG570452.1_Pimephales_promelas_i ..........C.....C.A...C.....G..T...........C.AT..T.G...T.....T.GA..............T MG570452.1_Pimephales_promelas_S ..........C.....C.A...C.....G..T...........C.AT..T.G...T.....T.GA....G.........T AB626850.1_Megalobrama_terminali CACGCACAGATAACCAACATCGCCCCACCAAAAGAATATATAACAGCCACACCACTAACATCGCCACGTAATATAGAAAA AP010779.1_Mylocheilus_caurinus_ ..G..G..A...........A.....C....GG........T.TG..T..C..C.C......C..C..C..C.....C.G AP011215.1_Gila_sp._1460_mitocho ..G.....A........T.....A..C...G.T..G.....T.T...T.......C...G..C..C..C.GCG....G.. AP011263.1_Scardinius_erythropht ..G...........T..T..T..T..T.....G........C.TG........C.C......T..C..C..C..G..G.. AP011267.1_Algansea_lacustris_mi ..A..G..A.....T.GT..T.T...T........G.....T..G..........C......C..C..C..C.C...G.. AP011268.1_Yuriria_alta_mitochon ..A.....A.C...T..T....T...C.....G........T.TG........C.C...G..C..T.....C........ AP011273.1_Hybognathus_nuchalis_ ..A...........T..T..T.T...C........G.....T.TG........C.C......C..C.......C...... AP011274.1_Couesius_plumbeus_mit ........A....T......TA....C..G.....G..C..C.TG........T.C......C..G..C.G...G..... AP011275.1_Platygobio_gracilis_m ..G.....A.G...T..T..G.T...C..G.....G.....T.TG........C.C......C..C....GC.C...... AP011277.1_Erimystax_dissimilis_ ..A.....A.....T.....T.....C.....G........C.TG..T..G..C.C......C..C.....C..C..... AP011279.1_Pimephales_promelas_m ..A.....AG.G..T.GT..TAT...C........G.....T.T...T.....C.C......C..T....G..C...... AP011280.1_Clinostomus_elongatus ..A..G..A.....T.....T.....C.....G..G.....T.T...T.....T.C......C..C..C..C........ AP012079.1_Luxilus_chrysocephalu ..A.....A.....T.....T.TT..T.....G........T.T...T.....C.C......C..T.......CG..... AP012080.1_Macrhybopsis_gelida_m ..A.....A..G..T..T..TA....T..T.....G.....T.T...T.....CTC......T..C....G......... AP012083.1_Notropis_atherinoides ..A..G..A........T..T.....G.....G..G..C..C.TG..T.....C.C......C..T....GC.CG..G.. AP012084.1_Notropis_baileyi_mito ..A..G..A.....T.....TAT...C........G.....C.TG..........C......C..T....GA.C...... AP012087.1_Cyprinella_galactura_ ..A..G..A..T..T.....GCT...C........G.....C.T...T.....C.C......C.....C..C.C...... AP012088.1_Hybopsis_lineapunctat ........A.....T..T..T.TT..C..C.....G.....T.TG..T.....C.C......C..T....G..C...... AP012090.1_Luxilus_cornutus_mito ..A.....A.....T..T..T.TT..C........G.....C.TG..T.....C.C......C..T.......C...... AP012091.1_Lythrurus_ardens_mito ..A.....A.....T..T..TATT..C.....G........T.TG........C.C......C..T....GA.C...... AP012092.1_Lythrurus_fumeus_mito ..A.....A..G..T..T..T.TT..C........G.....T.T...T.....C.C......C..T.......C...... AP012093.1_Lythrurus_lirus_mitoc ..A.....A.....T..T..TAT...C.....G........C.TG..T.....C.C......C..T.....A.CG..G.. AP012094.1_Lythrurus_umbratilis_ ..A.....A.....T..T..TATT..C.....G........T.TG........C.C......C..T....GA.C...... AP012095.1_Macrhybopsis_meeki_mi ..A.....A.....T......A....C..T.....G.....T.T.........CTC......T..C..C.GC........ AP012097.1_Notropis_bifrenatus_m ..A.....A..G..T.GT..TAT...C........G.....C.TG........C.C......C..T..C..C.C...... AP012098.1_Pimephales_sp._MCZunc ..A.....A.....A.GT...AT...C........G.....T.T.........C.C......T..T..A.GA........ AP012100.1_Notropis_telescopus_m ..A..G..A.....T.....T.T...C........G.....T.TG........C.C......T..T.....C.C...... AP012101.1_Pimephales_notatus_mi ..A.....A.....A.GT...AT...C........G.....T.T.........C.C......T..T..G.GA.C...... AP012102.1_Pimephales_vigilax_mi ..A.....A.....T.GT..TA....C..............T.....T.....C.C..T...C..T....GA.C...... AP012103.1_Pogonichthys_macrolep ..G..G..A...........TAT...C........G..C..T.TG..T..C..C.C...G..C..G...........C.. AP012106.1_Richardsonius_balteat ..G..G..A.....T.....T.....C....G.........T.T......G..T.C...G..C..C..C..C.....G.. AP012108.1_Notropis_chrosomus_mi ..A..G..A.C...T..T..T.T.........G..G.....T.TG........C.C......C..T.....C.C...G.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..A.....A.....T.GT..TA....C..............T.....T.....C.C..T...C..T....GA.C...... Pimephales_vigilax_R1S3_________ ..A.....A.....T.GT..TA....C..............T.....T.....C.C..T...C..T....GA.C...... DQ536429.1_Notropis_stramineus_m ..G..G.....G..T..T..T.T...C.....G..G.....C.TT.....C..T.CG.....C..C..C....CG..G.. JX910141.1_Squaliobarbus_curricu ..T.....A...........T.....G.........................TG..G.....C.....C........... KC351187.1_Squaliobarbus_curricu ..T.....A...........T.....G..........................G..G.....C.....C........... KT278765.1_Pimephales_promelas_m ..A.....A..G..T.GT..TATT..C........G.....T.T...T.....C.C......C..T....G..C...... KT289925.1_Pimephales_promelas_m ..G.....A..G..T.GT..TAT...C........G.....T.T...T.....C.C......C..T....G..C...... KT424924.1_Rhinichthys_osculus_m ..A..G..A.....T.....A.....T..T...........T.TG........C.C......C..C....G......C.. KU200257.1_Chanodichthys_ilishae ........A............A............................G...........T.......G......... MF972070.1_Siphateles_bicolor_mo ..G..G..C.C...............C...G.......C..C.T...T.......C..TG..C.......G......... MG570407.1_Notropis_chalybaeus_v ..A.....A...........T.TT..C........G.....T.T.........C.C......T..T.....A.C...... MG570408.1_Notropis_bifrenatus_v ..A.....A..G..T.GT..TAT...C........G.....C.TG........C.C......C..T..C..C.C...... MG570413.1_Notropis_heterolepis_ ..A.....A..G..T.GT..T.T...C........G.....T.T.........C.C......C..T..C....CG..... MG570416.1_Rhinichthys_obtusus_v ..G..G..A.G...T..T..G.....C....G......C..C.TG........C.C......C..C....G..CG....G MG570417.1_Rhinichthys_obtusus_v ..G..G..A.G...T..T..G.....C....G......C..C.TG........C.C......C..C....G..CG....G MG570420.1_Pimephales_notatus_vo ..A.....A.....A.GT...AT...C........G.....T.T.........C.C......T..T..A.GA........ MG570443.1_Notropis_hudsonius_is ..............T.G.....T...C........G.....T.TG.....G..C.C......C..T....G..CG..... MG570444.1_Rhinichthys_atratulus ..A.....A.....T.....A.....C....G.........T.T.........C.C...G..C..C....G...G.CG.G MG570445.1_Rhinichthys_atratulus ..A.....A.....T.....A.....C....G.........T.T.........C.C...G..C..C....G...G.CG.G MG570447.1_Luxilus_cornutus_isol ..A.....A.....T..T..T.TT..C........G.....C.TG..T.....C.C......C..T.......C...... MG570449.1_Luxilus_cornutus_isol ..A.....A.....T..T..T.TT..C........G.....C.TG..T.....C.C......C..T.......C...... MG570450.1_Pimephales_notatus_is ..A.....A.....A.GT...AT...C........G.....T.T.........C.C......T..T..A.GA........ MG570451.1_Notropis_bifrenatus_i ..A.....A..G..T.GT..TAT...C........G.....C.TG........C.C......C..T..C..C.C...... MG570453.1_Exoglossum_maxillingu ..A.....A.....T.....T.....C.....G........C.TG..T..G..C.C......C..C.....C..C..... MG570454.1_Pimephales_promelas_i ..G.....A..G..T.GT..TAT...C........G.....T.T...T.....C.C......C..T....G..C...... MG570455.1_Notropis_atherinoides ..A..G..A........T..T.....G.....G..G..C..C.TG..T.....C.C......C..T....GC.C...G.. MG570456.1_Notropis_atherinoides ..A..G..A........T..T.....G.....G..G..C..C.TG..T.....C.C......C..T....GC.CG..G.. MG570457.1_Pimephales_notatus_is ..A.....A.....A.GT...AT...C........G.....T.T.........C.C......T..T..A.GA........ MG570458.1_Pimephales_notatus_is ..A.....A.....A.GT...AT...C........G.....T.T.........C.C......T..T..A.GA........ MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .....G..A.....T..T..T.TT..C........G.....T.TG........C.C......C..T.....A.C.AC... MT364325.1_Hybognathus_amarus_mi ..A.....A.....T..T..T.T...C........G.....C.TG..T.....T.C......C..C.......C...... MT501368.1_Gila_cypha_isolate_SN ..G.....A..............A..C...G.T........T.T...T.....G.C..T...C..C....G.G....... MT501369.1_Notropis_simus_pecose ..G..G..A.....T..T..T.AA..C........G.....C.T......G....C...G..C..T.....A.C...G.. MT501378.1_Hybognathus_amarus_is ..A.....A.....T..T..T.T...C........G.....C.TG..T.....T.C......C..C.......C...... MT501385.1_Notropis_jemezanus_vo ..G..G..A.....T..T..T........G..G..G..C..C.TG..T.....T.C......C..T.....C.C...G.. MT501391.1_Rhinichthys_osculus_i ..A.....A.....T.....G.....C..T..G..G.....C.TG.....G..C.C......C..C..C.G......... MT667239.1_Rhinichthys_osculus_t ..A.....A.....T.....G.....C..T..G........C.TG.....G..C.C......C..C..C.G......... MT667242.1_Luxilus_cornutus_vouc ..A.....A.....T..T..T.TT..C........G.....C.TG..T.....C.C......C..T.......C...... MW300340.1_Hybognathus_placitus_ ..A..G..A........T..T.T...C........G.....T.TG........C.C......C.....C..C.C...G.. MW300341.1_Hybognathus_placitus_ ..A..G..A........T..T.T...C........G.....T.TG........C.C......C.....C..C.C...G.. NC_013763.1_Mylocheilus_caurinus ..G..G..A...........A.....C....GG........T.TG..T..C..C.C......C..C..C..C.....C.G NC_033926.1_Opsopoeodus_emiliae_ ........A...........TA....C..............T.T.........C.CC.....C..T.....C.C...... NC_037008.1_Notropis_chalybaeus_ ..A.....A...........T.TT..C........G.....T.T.........C.C......T..T.....A.C...... NC_037009.1_Notropis_heterolepis ..A.....A..G..T.GT..T.T...C........G.....T.T.........C.C......C..T..C....CG..... NC_037010.1_Rhinichthys_obtusus_ ..G..G..A.G...T..T..G.....C....G......C..C.TG........C.C......C..C....G..CG....G NC_037014.1_Notropis_hudsonius_i ..............T.G.....T...C........G.....T.TG.....G..C.C......C..T....G..CG..... NC_037015.1_Exoglossum_maxilling ..A.....A.....T.....T.....C.....G........C.TG..T..G..C.C......C..C.....C..C..... NC_054086.1_Ptychocheilus_lucius ..A.....A....T...T.....A..C...G.T........T.T...T..........T...C..C..C.G.G....... NC_054257.1_Gila_cypha_isolate_S ..G.....A..............A..C...G.T........T.T...T.....G.C..T...C..C....G.G....... NC_054259.1_Gila_nigrescens_isol ..G.....A........T.....G..C...G.T........T.T...T.......C......C..C..C.G.G....G.. NC_054260.1_Hybognathus_amarus_i ..A.....A.....T..T..T.T...C........G.....C.TG..T.....T.C......C..C.......C...... NC_054262.1_Notropis_jemezanus_v ..G..G..A.....T..T..TA.......G..G..G..C..C.TG..T.....C.C...G..C..T.....C.C...G.. Pimephales_notatus_R2S3_________ ..A.....A.C...T.GT..TATT..C........G.....C..G.....G..T.C......C..T..C.GA.C...... Pimephales_tenellus_tenellu_R2S1 ..A.....A.....T.GT..TATT..C........G.....T.T...T.....C.C......C..C..C..C.C...... Pimephales_tenellus_parvice_R2S2 ..A...........T.GT..TATT..C........G..C..T.T.........C.C......C..C..C.GC.C...... Pimephales_notatus_R1S1_________ ..A.....A.C...T.GT..TATT..C........G.....C..G.....G..T.C......C..T..C.GA.C...... MG570452.1_Pimephales_promelas_i ..G.....A..G..T.GT..TAT...C........G.....T.T...T.....C.C......C..T....G..C...... MG570452.1_Pimephales_promelas_S ..A.....AG.G..T.GT..TAT...C........G.....T.T...T.....C.C......C..T....G..C...... AB626850.1_Megalobrama_terminali CTCCTTTAACCCATCAACGACTACTCAAGAGCCCTCATACCACCCCCCTCAAAATAGCCCGGCCGCCAACACAACACCTA AP010779.1_Mylocheilus_caurinus_ ...T..C.G...G....TA.TC..C.....A...........A...........C.AA..A..TATT..G.....T.... AP011215.1_Gila_sp._1460_mitocho ...T.....T.......TA.T.........C..T.....T................AT.....TAT..GG.......... AP011263.1_Scardinius_erythropht ......A.GT.......TA.T...C.....A........T..A..........G..T...C..TATT.GA........AG AP011267.1_Algansea_lacustris_mi ...T.....AT......TA..CG.......A.......GT..T........G....AT...C.TAT..G......T..C. AP011268.1_Yuriria_alta_mitochon ...T..C...T......TAG.CG.......A..T..G.G...TT.T.....G.......A.C.TAT......C..C..C. AP011273.1_Hybognathus_nuchalis_ ...T......T......TCG.CG.......A.......GT..T..................C....T..A.....C.... AP011274.1_Couesius_plumbeus_mit ...T...........C..A.TA.T...G........G......T..........C.........AT...G.TC..T...G AP011275.1_Platygobio_gracilis_m ...T...........G.TAGT......G..C.....G.GT.............G...T..A....T..G..T......C. AP011277.1_Erimystax_dissimilis_ T..T........G..G.T..TA..C.....A.....G.G....T.......G..C..A..C...A.............C. AP011279.1_Pimephales_promelas_m ...T......T......TTG..G.......A.......G...T..............T..AC.TATT.GA..G..C.... AP011280.1_Clinostomus_elongatus ...T..C........G.TA.T...C.....A........T..A........G....AT..A..TATA..A........C. AP012079.1_Luxilus_chrysocephalu ...T.....TT......TCG..G....G..A.......GT................A...CC.TATT.G......C.... AP012080.1_Macrhybopsis_gelida_m ...T............GTA.....C.....A.......GT...........G....AT..A...AT...G........C. AP012083.1_Notropis_atherinoides ...T......T......TAG..G....G..A.....G.GT..T.................CC.TATT.GTGTG..C.... AP012084.1_Notropis_baileyi_mito ...T..C...T.......AG..G.C..G..A.......GT................A...CC.TAT..G......C.... AP012087.1_Cyprinella_galactura_ T..T.....AT.......AG..GT......A.......GT..T........G..A.A....C....T..AG....T.... AP012088.1_Hybopsis_lineapunctat .G.T......T.G....TT...G.......A.......GT................A....C.TATT........T..C. AP012090.1_Luxilus_cornutus_mito ...T......T......TAG..G....G..A.......GT................A...TC.TAT..G......C.... AP012091.1_Lythrurus_ardens_mito ...T......T......TAG..G.......A.......GT.................T..CC.TATT.GA..C..C.... AP012092.1_Lythrurus_fumeus_mito ...T......T......TTG..G.......A.....G.GT................T.G.CC.TATT.GG.TG..C.... AP012093.1_Lythrurus_lirus_mitoc ...T.....TT......T.G..G....G..A.......GT................AT..CC.TATT.CAG.C..C.... AP012094.1_Lythrurus_umbratilis_ ...T......T......TAG..G.......A.......GT................AT..CC.TATT.GA..C..C.... AP012095.1_Macrhybopsis_meeki_mi ...T............GTA.....C.....A.......GT.....T........C.AT.......T.....T......C. AP012097.1_Notropis_bifrenatus_m ...T....TTT......TAG..G.......A.......GT..T...........C.AT...C.TATT..T.T...C.... AP012098.1_Pimephales_sp._MCZunc ...T......T......TAG..G.......A..T....G...T.............A...AC.TATT..T.....C.... AP012100.1_Notropis_telescopus_m ...T.....TT......TCG..G.......A.......GT................A....C.TATT....T...C.... AP012101.1_Pimephales_notatus_mi ...T......T......TAG..G.......A..T....G...T.............A...AC.TATT..T..G..C.... AP012102.1_Pimephales_vigilax_mi ...T.....T....T..TA...........A..T........A........G........ACTTAGT.TT....TT..C. AP012103.1_Pogonichthys_macrolep ...T...........G.TA.TA..C.....A........T..A...........C.AA..C..TATT..A........C. AP012106.1_Richardsonius_balteat ...T.....T........A.T...C.....A........T..A........G........A..TAT..GG........C. AP012108.1_Notropis_chrosomus_mi ...T..C...T......T.G.CGTC.....A.......GT................A...AC.TAT..G...G..C...G AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...T.....T....T..TA...........A..T........A........G........ACTTAGT.TT....TT..C. Pimephales_vigilax_R1S3_________ ...T.....T....T..TA...........A..T........A........G........ACTTAGT.TT....TT..C. DQ536429.1_Notropis_stramineus_m ...T....T.T......TAG..G...............GT............G.......CC.TAT..G......C..C. JX910141.1_Squaliobarbus_curricu T.....C...........A..C........A.......................C.A...T..T..T..A.....T.... KC351187.1_Squaliobarbus_curricu T.....C...........A..C........A.......................C.A...T..T..T..A.....T.... KT278765.1_Pimephales_promelas_m ...T......T......TTG..G.......A.......G...T..............T..AC.TATT.GT..C..C..C. KT289925.1_Pimephales_promelas_m ...T......T......TTG..G.......A.......G...T..............T..AC.TATT.GA..G..C.... KT424924.1_Rhinichthys_osculus_m .........T.......T.GT...C..............T...........G...GA........T..CT..G....... KU200257.1_Chanodichthys_ilishae ......C.....G.....A.....C.....A........T................A.........T............. MF972070.1_Siphateles_bicolor_mo ...T.............TA.T............T.....T...........G....AT.....TAT..GA.T......C. MG570407.1_Notropis_chalybaeus_v ...T.....AT......TAG..G.C.....A.......GT...........G....AT...C.TATT..T.....C.... MG570408.1_Notropis_bifrenatus_v ...T....TTT......TAG..G.......A.......GT..T...........C.AT...C.TATT..T.T...C.... MG570413.1_Notropis_heterolepis_ ...T......T......TA...G.C.....A.......GT..T.............CT..AC..AT......T..T..C. MG570416.1_Rhinichthys_obtusus_v ...T.....A.......TA.....C.....A.....G.GT..............C.A.......AT..G...G..C.... MG570417.1_Rhinichthys_obtusus_v ...T.....A.......TA.....C.....A.....G.GT..............C.A.......AT..G...G..C.... MG570420.1_Pimephales_notatus_vo ...T......T......TA...G.......A..T....G...T.............A...AC.TATT..T.....C.... MG570443.1_Notropis_hudsonius_is ...T.....TT......TAG.CG.......A.....G.GT.................T..AC.TAT.........C.... MG570444.1_Rhinichthys_atratulus ...T.....T.......TA.TG..C.....A.....G.GT...........G..C.........AT..G......C.... MG570445.1_Rhinichthys_atratulus ...T.....T.......TA.TG..C.....A.....G..T...........G..C.........AT..G......C.... MG570447.1_Luxilus_cornutus_isol ...T.....TT......TCG..G....G..........GT................A...TC.TAT..G......C.... MG570449.1_Luxilus_cornutus_isol ...T.....TT......TCG..G....G..........GT................A...TC.TAT..G......C.... MG570450.1_Pimephales_notatus_is ...T......T......TAG..G.......A..T....G...T.............A...AC.TATT..T.....C.... MG570451.1_Notropis_bifrenatus_i ...T....TTT......TAG..G.......A.......GT..T...........C.AT...C.TATT..T.....C.... MG570453.1_Exoglossum_maxillingu T..T........G..G.T..TA..C.....A.....G.G....T.......G..C..A..C...A.............C. MG570454.1_Pimephales_promelas_i ...T......T......TTG..G.......A.......G...T..............T..AC.TATT.GA..G..C.... MG570455.1_Notropis_atherinoides ...T......T......TAG..G....G..A.....G.GT..T........G........CC.TATT.GTGTG..C.... MG570456.1_Notropis_atherinoides ...T......T......TAG..G....G..A.....G.GT..T.................CC.TATT.GTGTG..C.... MG570457.1_Pimephales_notatus_is ...T......T......TAG..G.......A..T....G...T.............A...AC.TATT..T.....C.... MG570458.1_Pimephales_notatus_is ...T......T......TAG..G.......A..T....G...T.............A...AC.TATT..T.....C.... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...T..C...T......TCG..G.C.............GT................A...AC......G........... MT364325.1_Hybognathus_amarus_mi ...T......T......TCG.CG.......A.......GT................A...AC...TT..A.....C.... MT501368.1_Gila_cypha_isolate_SN ...T........G....TA.T.........C..T.........T............AT.....TAT..GA.......... MT501369.1_Notropis_simus_pecose ...T......T......T.GG.G.C..G..A.......GT..T..................C.TAT..G......C..C. MT501378.1_Hybognathus_amarus_is ...T......T......TCG.CG.......A.......GT................A...AC...TT..A.....C.... MT501385.1_Notropis_jemezanus_vo ...T......T......TAG..G....C..A.......GT..T.............C...CC.TATT.GT.T...C.... MT501391.1_Rhinichthys_osculus_i ...T.....T.....G.T..T...C.....A........T..GT................AC..AT..CTG.T.....C. MT667239.1_Rhinichthys_osculus_t ...T.....T.....G.T..T...C..............T..GT................AC..AT..CT..T.....C. MT667242.1_Luxilus_cornutus_vouc ...T.....TT......TCG..G....G..........GT................A...TC.TAT..G......C.... MW300340.1_Hybognathus_placitus_ ...T.....GT.G..G.T.G..G.......A.....G.GT..T.....C..G..C.....AC.TATT..G.....C.... MW300341.1_Hybognathus_placitus_ ...T.....GT....G.T.G..G.......A.......GT..T.....C..G..C.....AC.TATT..GG....C.... NC_013763.1_Mylocheilus_caurinus ...T..C.G...G....TA.TC..C.....A...........A...........C.AA..A..TATT..G.....T.... NC_033926.1_Opsopoeodus_emiliae_ T..T......T.....CTT...G.C.....A..AC...GT..G......A......AT..AC..A...G..T...C.... NC_037008.1_Notropis_chalybaeus_ ...T.....AT......TAG..G.C.....A.......GT...........G....AT...C.TATT..T.....C.... NC_037009.1_Notropis_heterolepis ...T......T......TA...G.C.....A.......GT..T.............CT..AC..AT......T..T..C. NC_037010.1_Rhinichthys_obtusus_ ...T.....A.......TA.....C.....A.....G.GT..............C.A.......AT..G...G..C.... NC_037014.1_Notropis_hudsonius_i ...T.....TT......TAG.CG.......A.....G.GT.................T..AC.TAT.........C.... NC_037015.1_Exoglossum_maxilling T..T........G..G.T..TA..C.....A.....G.G....T.......G..C..A..C...A.............C. NC_054086.1_Ptychocheilus_lucius ...T.............TA.T.........C..T.....T...T............AT.....TAT..GA.......... NC_054257.1_Gila_cypha_isolate_S ...T........G....TA.T.........C..T.........T............AT.....TAT..GA.......... NC_054259.1_Gila_nigrescens_isol ...T.............TA.T.........C........T................A......TAT..GA..G....... NC_054260.1_Hybognathus_amarus_i ...T......T......TCG.CG.......A.......GT................A...AC...TT..A.....C.... NC_054262.1_Notropis_jemezanus_v ...T......T......TAG..G....C..A.......GT..T.............C...CC.TATT.GT.T...C.... Pimephales_notatus_R2S3_________ ...T.....TT.......AC..G.......A------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 ...T.....TT......TTG..G.C..T........G.GT..T........G....A...AC..AAT..T.....C.... Pimephales_tenellus_parvice_R2S2 ...T.....TT......TTG..G.C..T........G.GT..T........G....A...AC..AAT..T.....C.... Pimephales_notatus_R1S1_________ ...T.....TT.......AC..G.......A..T....G.................A...CC.TATT..T..G..C..C. MG570452.1_Pimephales_promelas_i ...T......T......TTG..G.......A.......G...T..............T..AC.TATT.GA..G..C.... MG570452.1_Pimephales_promelas_S ...T......T......TTG..G.......A.......G...T..............T..AC.TATT.GA..G..C.... AB626850.1_Megalobrama_terminali GAAGATAAACTAGCACATACCCGGCTACAGAACGACTTCCCCAAGCCTCTGGAAAAGGCTCAGCAGCCAAAGCCGCTGAA AP010779.1_Mylocheilus_caurinus_ AC.....GGT...G........A.....T........C.................G..T..G...........T..A... AP011215.1_Gila_sp._1460_mitocho .T.C...G.T..AG..G.....AA.C..T........C.....G.......................T..G.....C..G AP011263.1_Scardinius_erythropht CC..G...........G..A..A..A..C........C.................T..T..............T..C..G AP011267.1_Algansea_lacustris_mi AC.....G.TC..G..G.....TATC..C..C..............T..A.................T..C..T...... AP011268.1_Yuriria_alta_mitochon .C.AG.....C.AG..G..T..TAT...C........C..T.............................C.....C... AP011273.1_Hybognathus_nuchalis_ ACGA...C..C.AA........TATA..T..G..G........G..T...........T...........C..T..C... AP011274.1_Couesius_plumbeus_mit TT........C.A......G.....C..T........C...........C..G.................G..T..C..G AP011275.1_Platygobio_gracilis_m .T.AG..G....AG..G.....A..C..C........C..T..G........G.................C..T..C... AP011277.1_Erimystax_dissimilis_ AT.A...GGTC.AA........AA.C..T........C.....G.........................GC..T.....G AP011279.1_Pimephales_promelas_m .T.AG.....C..A........CA....C........C.....G........G.................C..T..C... AP011280.1_Clinostomus_elongatus AC.......TC.AG..G.....A..C..T........C.....G.......................T.....T..C... AP012079.1_Luxilus_chrysocephalu AC.A......C..G.....G..CAT...C........C................................C..T..C... AP012080.1_Macrhybopsis_gelida_m CT.A...T....AA..G..A..A..A..C........C..T..G..T...........A..G........T..T..C... AP012083.1_Notropis_atherinoides CC........C.A.........TAT...C..C.....C..T..C.........................GC..T..C..G AP012084.1_Notropis_baileyi_mito AC.A......C.A......T..TAT...C..G......................................T..T..C..G AP012087.1_Cyprinella_galactura_ AC.....C....AG........TATC..T..G.....C.....G.....C..G..C.....G..G..T..C..T..C... AP012088.1_Hybopsis_lineapunctat .TGA...C..C.AA........CAT...C........C..............G.................C..T..C... AP012090.1_Luxilus_cornutus_mito AC.....G..C.AG..G..A..CAT...C.....G..C................................C..T..C... AP012091.1_Lythrurus_ardens_mito .C..G..C..C.AA........TATC..C.....G..C..T..C.....C...........G.......GC.....C... AP012092.1_Lythrurus_fumeus_mito AC.A......C..A..G..T..TATC..C..G.....C..T..G........G..G.....G.....T.GT.....C... AP012093.1_Lythrurus_lirus_mitoc .C.CG..C..C.AA..G.....TAT...C........C..T..C.....C...................GC.....C..G AP012094.1_Lythrurus_umbratilis_ .C..G..C..C.AA..G.....TATC..C.....G..C..T..C.....C...........G.......GC.....C... AP012095.1_Macrhybopsis_meeki_mi TT.AG..C....AA..G.....A..A..T........C..T.....T.....G.....A...........T..T...... AP012097.1_Notropis_bifrenatus_m AT.A...C..C.A...G.....TAT...C........C.....G...........G..............C..T..C... AP012098.1_Pimephales_sp._MCZunc AT.A......C.AA........TA....C..G...........G........G.................C.....C... AP012100.1_Notropis_telescopus_m .C.A...T..C.....G.....CATC..C..............G........G................GC..T..C... AP012101.1_Pimephales_notatus_mi AT.A.....TC.AA........TAT...C..G.....C.....G........G.................C.....C... AP012102.1_Pimephales_vigilax_mi AT.T.....T.GAA.....T..CATC..T........C.............................T..C..T...... AP012103.1_Pogonichthys_macrolep AC.AG...GT...G.....T..A.....T........C.................G..T..G...........T..C..G AP012106.1_Richardsonius_balteat AC.A.....TC.AG..G...........T........C.....G..........................G..T..C..G AP012108.1_Notropis_chrosomus_mi ACGA...GG.C.A......G..TAT...C...........T..G........G..............T.GT..T..C... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ AT.T.....T.GAA.....T..CATC..T........C.............................T..C..T...... Pimephales_vigilax_R1S3_________ AT.T.....T.GAA.....T..CATC..T........C.............................T..C..T...... DQ536429.1_Notropis_stramineus_m .C.....T..C.AG..G.....TAT...C........C.....G.....C...................GC..T..C... JX910141.1_Squaliobarbus_curricu .C.AG..C....A......T..A..C...........C...........C..G........................... KC351187.1_Squaliobarbus_curricu .C.AG..C....A......T..A..C...........C...........C..G........................... KT278765.1_Pimephales_promelas_m .T.A......C..A.....T..CA....C........C.....G........G.................C..T..C... KT289925.1_Pimephales_promelas_m .T.AG.....C..A........TA....C........C.....G........G.................C..T..C... KT424924.1_Rhinichthys_osculus_m AC..G....TC..A..G.....A..C..T..............G.......................T..C..T..C... KU200257.1_Chanodichthys_ilishae ....G..G....A.........A....................G.....C....................G..T...... MF972070.1_Siphateles_bicolor_mo AT.CG....T..AA..G.....A..C..C........C.................G.................T..C..G MG570407.1_Notropis_chalybaeus_v AT........C.A.........TAT...C.....G..............C....................T.....C... MG570408.1_Notropis_bifrenatus_v AT.A...C..C.A...G.....TAT...C........C.....G...........G..............C..T..C... MG570413.1_Notropis_heterolepis_ CT.A......C.AA..G.....TA....T........C..T..G.....C....................C..T..C... MG570416.1_Rhinichthys_obtusus_v .C.AG..GGTC..A..G.....AA.C..C.....G..C.....G.....C..G..G..............C..T..C..G MG570417.1_Rhinichthys_obtusus_v .C.AG..GGTC..A..G.....AA.C..C.....G..C.....G.....C..G..G..............C..T..C..G MG570420.1_Pimephales_notatus_vo AT.A......C.AA........TA....C..G...........G........G.................C.....C... MG570443.1_Notropis_hudsonius_is AC..G.....C..T........CATC..C........C...........C..G.................C..T..C... MG570444.1_Rhinichthys_atratulus .C.AG..GGTC..A..G...A.AA.C..C..G.....C.................G..............G.....C..G MG570445.1_Rhinichthys_atratulus .C.AG..GGTC..A..G...A....C..C..G.....C.................G..............G.....C..G MG570447.1_Luxilus_cornutus_isol AC........C.AG..G..A..CAT...C.....G..C................................C..T..C... MG570449.1_Luxilus_cornutus_isol AC........C.AG..G..A..CAT...C.....G..C................................C..T..C... MG570450.1_Pimephales_notatus_is AT.A......C.AA........TA....C..G...........G........G.................C.....C... MG570451.1_Notropis_bifrenatus_i AT.A...C..C.A...G.....TAT...C........C.....G...........G..............C..T..C... MG570453.1_Exoglossum_maxillingu AT.A...GGTC.AA........AA.C..T........C.....G.........................GC..T.....G MG570454.1_Pimephales_promelas_i .T.AG.....C..A........TA....C........C.....G........G.................C..T..C... MG570455.1_Notropis_atherinoides CC........C.A...G.....TAT...C..C.....C..T..C..........................C..T..C..G MG570456.1_Notropis_atherinoides CC........C.A.........TAT...C..C.....C..T..C.........................GC..T..C..G MG570457.1_Pimephales_notatus_is AT.A......C.AA........TA....C..G...........G........G.................C.....C... MG570458.1_Pimephales_notatus_is AT.A......C.AA........TA....C..G...........G........G.................C.....C... MK421554.1_Parabramis_pekinensis ......................A......................................................... MT333789.1_Notropis_lutipinnis_v AC..G..T..C.A.........TATC..C........C..T..G..T..C..G..G..............T..T..C..G MT364325.1_Hybognathus_amarus_mi .CGAG..C..C.AG..G.....TATA..T..G........T..G..T........G..T..........GC..T.....G MT501368.1_Gila_cypha_isolate_SN AT.CG....T..AG..G...........C........C..T..G...........G...........T..G..T..C..G MT501369.1_Notropis_simus_pecose AC.AG..G..CGA...G.....TAT...C........C.....G.....A..G................GC..T.....G MT501378.1_Hybognathus_amarus_is .CGAG..C..C.AG..G.....TATA..T..G........T..G..T........G..T..........GC..T.....G MT501385.1_Notropis_jemezanus_vo CC.....C........G.....TAT...C..C.....C..T..C.................T..G.....C..T..C..G MT501391.1_Rhinichthys_osculus_i .C..G..G.TC.AA........A..C..T........C.....G........G..............T..C..T..C... MT667239.1_Rhinichthys_osculus_t .C..G..G.TC.AA........AA.C..T........C..............G..............T..C..T..C... MT667242.1_Luxilus_cornutus_vouc AC........C.AG..G..A..CAT...C.....G..C................................C..T..C... MW300340.1_Hybognathus_placitus_ .C.AG..C..C.AA........TATC..C..C...T.......G..T........G..T........T.GC..T..C... MW300341.1_Hybognathus_placitus_ .C.AG..C..C.AA........TATG..C..C...T.......G..T........G..T........T.GC..T..C... NC_013763.1_Mylocheilus_caurinus AC.....GGT...G........A.....T........C.................G..T..G...........T..A... NC_033926.1_Opsopoeodus_emiliae_ AT.A......C.AG.....A..CAGC..C........C..T..............G...........T.GC..T..C... NC_037008.1_Notropis_chalybaeus_ AT........C.A.........TAT...C.....G..............C....................T.....C... NC_037009.1_Notropis_heterolepis CT.A......C.AA..G.....TA....T........C..T..G.....C....................C..T..C... NC_037010.1_Rhinichthys_obtusus_ .C.AG..GGTC..A..G.....AA.C..C.....G..C.....G.....C..G..G..............C..T..C..G NC_037014.1_Notropis_hudsonius_i AC..G.....C..T........CATC..C........C...........C..G.................C..T..C... NC_037015.1_Exoglossum_maxilling AT.A...GGTC.AA........AA.C..T........C.....G.........................GC..T.....G NC_054086.1_Ptychocheilus_lucius CT.C.....T..AA..G........C..C........C.................G.................T..C..G NC_054257.1_Gila_cypha_isolate_S AT.CG....T..AG..G...........C........C..T..G...........G...........T..G..T..C..G NC_054259.1_Gila_nigrescens_isol .T.C...G.T..AG..G.....AA.C..C........C.....G.....C.................T..G.....C... NC_054260.1_Hybognathus_amarus_i .CGAG..C..C.AG..G.....TATA..T..G........T..G..T........G..T..........GC..T.....G NC_054262.1_Notropis_jemezanus_v CC.....C........G.....TAT...C..C.....C..T..C....................G.....C..T..C..G Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 AT.A......C.AA........CAT...C..............G.................T........C..T..C... Pimephales_tenellus_parvice_R2S2 AT.A......C.AA........CAT...C..............G.................T........C..T..C... Pimephales_notatus_R1S1_________ AT.A......C.AG........CA....C........C..............G.................C..T..C... MG570452.1_Pimephales_promelas_i .T.AG.....C..A........TA....C........C.....G........G.................C..T..C... MG570452.1_Pimephales_promelas_S .T.AG.....C..A........CA....C........C.....G........G.................C..T..C... AB626850.1_Megalobrama_terminali TAAGCAAACACCACGAGCATTCCCCCTAAATAAATTAAAAAAAGGACTAAAGATAAAAAAGAGCCCCCATAACCAACTAA AP010779.1_Mylocheilus_caurinus_ ..............A........T..C........C..G..G..A..C........G.....C......C.......C.. AP011215.1_Gila_sp._1460_mitocho ........T...........G..T.................C.AC.....C....G......C......C.......... AP011263.1_Scardinius_erythropht .................T..C..T..C.G............T.AA..C.G.....G......C......C.G........ AP011267.1_Algansea_lacustris_mi ........T.....A...........C..G..............A........C..G....GC..T..GCT.....T... AP011268.1_Yuriria_alta_mitochon ........T..T..T..T..........GG........G.....A...........G..G.GC..T..GCTG....T... AP011273.1_Hybognathus_nuchalis_ ...........T...........T....................A................GA..T..GCT.....TC.. AP011274.1_Couesius_plumbeus_mit ........T.....A........T........G.....G..C..A....GG..C..G.....T.....GC.........G AP011275.1_Platygobio_gracilis_m ..G..G......................................A.....G..C.G...G.GC..T...CT......C.G AP011277.1_Erimystax_dissimilis_ ..G........T..A....................C.G......A..C..C..C........T..T...C.......C.G AP011279.1_Pimephales_promelas_m ........T..............T.............G...........GG..C.......GT..T...CT.....TC.G AP011280.1_Clinostomus_elongatus ..............A..T..C..............C..G.....A..C.......GG.....C......C.G..G..C.. AP012079.1_Luxilus_chrysocephalu ..............C.A...........................A...........G..G.GC..T..GCTG..G.TC.. AP012080.1_Macrhybopsis_gelida_m ..............A..........................C.AA........C.......GC..T...CT......... AP012083.1_Notropis_atherinoides ..G..G..............C................................C..G..G.GC.....GCT.....TC.. AP012084.1_Notropis_baileyi_mito ........T........T..C..A.........................GG..C..G..G..C.....GCTG..G.TC.. AP012087.1_Cyprinella_galactura_ ........T..T..A..T...................G...T..A..........GG..G.GC..T...CT.....TC.G AP012088.1_Hybopsis_lineapunctat ..G........T..A.....C...........G...........A.....G..C..G..G.GC.....GCT.....T... AP012090.1_Luxilus_cornutus_mito ..............C.AT.................C.G......A....GG.....G..G.GC..T...CT...G.TC.. AP012091.1_Lythrurus_ardens_mito ........T.................C..G.......G...G..A..C..G..C..G....GC..T...CTG....TC.. AP012092.1_Lythrurus_fumeus_mito ..G...........A..............G...........G..A........C..G....GC.....GCTG....TC.. AP012093.1_Lythrurus_lirus_mitoc ........T.................C.GG..G.....G..G..A........C..G....GC..T...CTG....TC.. AP012094.1_Lythrurus_umbratilis_ ........T.................C..G...........G..A..C..G..C..G....GC..T...CTG....TC.. AP012095.1_Macrhybopsis_meeki_mi ..............A.......................G..T..A.....T..C.......GT..T...CT......C.. AP012097.1_Notropis_bifrenatus_m ...........T..C.A...C........G...........G..A.....T..........GT......CT...G.TC.. AP012098.1_Pimephales_sp._MCZunc ..G..............T...................G...........G...C.....G.GC..T...CT...G.T... AP012100.1_Notropis_telescopus_m ..T...........A........G.............G...............C..G..G.GC......CTC....T... AP012101.1_Pimephales_notatus_mi ..G..............T...............................G...C.....G.GC..T...CT...G.T... AP012102.1_Pimephales_vigilax_mi ..C...........A....................C........A.....G........G..T..T...CT.....T... AP012103.1_Pogonichthys_macrolep ..............A...........C..G...........G..A..C.G............C......C.......C.. AP012106.1_Richardsonius_balteat ..C..G.....T.....T..........G......C.G......A..C.G............C.....GC.......C.. AP012108.1_Notropis_chrosomus_mi ..G........T..A..T..C........G........G..........G...C..G..G.GC......CT.....TC.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..C...........A....................C........A.....G........G..T..T...CT.....T... Pimephales_vigilax_R1S3_________ ..C...........A....................C........A.....G........G..T..T...CT.....T... DQ536429.1_Notropis_stramineus_m ...........T..A.............GG..G.....G..G..A..C.GG.....G....GC.....GCT...G.TC.G JX910141.1_Squaliobarbus_curricu ..............A....................C..G.....A..C.....C........A.....G........... KC351187.1_Squaliobarbus_curricu ..............A....................C..G.....A..C.....C........A.....G........... KT278765.1_Pimephales_promelas_m ........T..............T.........................G...C.......GC..T...CT...G.TC.. KT289925.1_Pimephales_promelas_m ........T..............T........G....G...........G...C.....G.GC..T...CT.....TC.. KT424924.1_Rhinichthys_osculus_m ........T.....A......................GG..G..A.................C..A..GC.......C.G KU200257.1_Chanodichthys_ilishae ..G.................C.....C..............G..A..C.....C..G.....A................. MF972070.1_Siphateles_bicolor_mo ........T...................G.........G.....A....G.....GG.....C.....GC....G..... MG570407.1_Notropis_chalybaeus_v ...........T..A..T..C..A..C.G...............A........C..G..G.GC..T..GCTG....T... MG570408.1_Notropis_bifrenatus_v ...........T..C.A...C........G...........G..A.....T..........GT......CT...G.TC.. MG570413.1_Notropis_heterolepis_ ..G...........A.............G.........G.....A................GC..T...CTG..G.TC.G MG570416.1_Rhinichthys_obtusus_v ........T.................C..........GG..........GG..C.....G..C..T..GC.C.....C.. MG570417.1_Rhinichthys_obtusus_v ........T.................C..........GG...........G..C.....G..C..T..GC.C.....C.. MG570420.1_Pimephales_notatus_vo ..G..............T...................G...........G...C.....G.GC..T...CT...G.T... MG570443.1_Notropis_hudsonius_is ........G.....A....................C........A........C.......GT..T...CTT....TC.G MG570444.1_Rhinichthys_atratulus ........T..T..C...........C..........G...........G...C.....G..C..T..GC.C.....C.. MG570445.1_Rhinichthys_atratulus ........T..T..C...........C..........G...........G...C.....G..C..T..GC.C.....C.. MG570447.1_Luxilus_cornutus_isol ..............C.A..................C.G......A....GG.....G..G.GC..T...CT...G.TC.. MG570449.1_Luxilus_cornutus_isol ..............C.A..................C.G......A....GG.....G..G.GC..T...CT...G.TC.. MG570450.1_Pimephales_notatus_is ..G..............T...................G...........G...C.....G.GC..T...CT...G.T... MG570451.1_Notropis_bifrenatus_i ...........T..C.A...C........G...........G..A.....T..........GT......CT...G.TC.. MG570453.1_Exoglossum_maxillingu ..G........T..A....................C.G......A..C..C..C........T..T...C.......C.G MG570454.1_Pimephales_promelas_i ........T..............T........G....G.........G.G...C.....G.GC..T...CT.....TC.. MG570455.1_Notropis_atherinoides ..G..G..............C........G.......................C..G..G.GC.....GCT.....TC.. MG570456.1_Notropis_atherinoides ..G..G..............C................................C..G..G.GC.....GCT.....TC.. MG570457.1_Pimephales_notatus_is ..G..............T...................G...........G...C.....G.GC..T...CT...G.T... MG570458.1_Pimephales_notatus_is ..G..............T...................G...........G...C.....G.GC..T...CT...G.T... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ..............A..T..C.................G.....A........C..G..G.GC.....GCTG..G.GC.. MT364325.1_Hybognathus_amarus_mi ........T..T..A..........................G..A....G...........GA..T...CT.....TC.G MT501368.1_Gila_cypha_isolate_SN ........T.....A..............G........G..T..A....GC....G......C......C....G..... MT501369.1_Notropis_simus_pecose ..G...........T..T...................................C..G..G.GC......CT.....T... MT501378.1_Hybognathus_amarus_is ........T..T..A..........................G..A....G...........GA..T...CT.....TC.G MT501385.1_Notropis_jemezanus_vo ..G........T........C.................G..G.......GG..C..G....GC......CT...G.TC.G MT501391.1_Rhinichthys_osculus_i ..............A.............G...G.....G..G..A.....G..C.....G..C..A..GC.......C.G MT667239.1_Rhinichthys_osculus_t ..............A.............G...G.....G..G..A.....G..C.....G..C..A..GC.......C.G MT667242.1_Luxilus_cornutus_vouc ..............C.A..................C.G......A....GG.....G..G.GC..T...CT...G.TC.. MW300340.1_Hybognathus_placitus_ .....G.....T...........T.....G..G.....G..........GT.....G....GA......CTG....TC.. MW300341.1_Hybognathus_placitus_ ...........T...........T.....G..G.....G..........GT.....G....GA......CTG....TC.. NC_013763.1_Mylocheilus_caurinus ..............A........T..C........C..G..G..A..C........G.....C......C.......C.. NC_033926.1_Opsopoeodus_emiliae_ ..............A.....C.......G...............A................GC......CTG....TC.. NC_037008.1_Notropis_chalybaeus_ ...........T..A..T..C..A..C.G...............A........C..G..G.GC..T..GCTG....T... NC_037009.1_Notropis_heterolepis ..G...........A.............G.........G.....A................GC..T...CTG..G.TC.G NC_037010.1_Rhinichthys_obtusus_ ........T.................C..........GG..........GG..C.....G..C..T..GC.C.....C.. NC_037014.1_Notropis_hudsonius_i ........G.....A....................C........A........C.......GT..T...CTT....TC.G NC_037015.1_Exoglossum_maxilling ..G........T..A....................C.G......A..C..C..C........T..T...C.......C.G NC_054086.1_Ptychocheilus_lucius ..............A.............G.........G..C.AA.....C....G......C......C.G........ NC_054257.1_Gila_cypha_isolate_S ........T.....A..............G........G..T..A....GC....G......C......C....G..... NC_054259.1_Gila_nigrescens_isol ........T.............................G..C.AC.....C....G......C......C.........G NC_054260.1_Hybognathus_amarus_i ........T..T..A..........................G..A....G...........GA..T...CT.....TC.G NC_054262.1_Notropis_jemezanus_v ..G........T........C.................G..........GG..C..G....GC......CT.....TC.G Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 ........T.....A.....A.......G...............A........C.....G.GC..A...CT.....TC.. Pimephales_tenellus_parvice_R2S2 ........T.....A.....A.......................A........C.....G.GC..A...CT.....TC.. Pimephales_notatus_R1S1_________ .......................A..C...........G.....A........C.......GC..T...CT.....T... MG570452.1_Pimephales_promelas_i ........T..............T........G....G.........G.G...C.....G.GC..T...CT.....TC.. MG570452.1_Pimephales_promelas_S ........T..............T.............G...........GG..C.......GT..T...CT.....TC.G AB626850.1_Megalobrama_terminali AATCCCACACCCAACCCCCGCTGCTACTACCAAACCTAAAGCAGCAAAATAAGGCGTAGGATTAGAAGCAACAGCAATCA AP010779.1_Mylocheilus_caurinus_ T.C........................C.....C..C..............G..T..G..G.................T. AP011215.1_Gila_sp._1460_mitocho T.C...G........T.....C..C.....T..........................T..G.....C.....G..G..T. AP011263.1_Scardinius_erythropht T.CT........G.....T........C..T.GG.....C...........G..T..G........T...........T. AP011267.1_Algansea_lacustris_mi .........T..C.....A..C..C....TT..C.....G........G..G.....T..G..G..C............. AP011268.1_Yuriria_alta_mitochon C.C......T........A..C..C..C.TA.GC.....G....................G.....C..G.......... AP011273.1_Hybognathus_nuchalis_ T.C......T........A..C.......T..GC.....G........G..C..............C...........T. AP011274.1_Couesius_plumbeus_mit T.C.....................C..C....GC..C..G...........T..A.....G.....G...........T. AP011275.1_Platygobio_gracilis_m C.C......T..G.....A.....C........C.....G..G.....G..G.....G........C.....G..G..A. AP011277.1_Erimystax_dissimilis_ T.C.....................C........T.....T...........G..T..G..G..G..C..G.......... AP011279.1_Pimephales_promelas_m T.C...G..T........G..C.......TT.GC..C..G........G..G...........G..C............. AP011280.1_Clinostomus_elongatus T.C............T..T.....C..C..T..C.............................G..C...........T. AP012079.1_Luxilus_chrysocephalu C.C...G..T..G.....A..C..C....TT..C.....G.....G..G...........G.....C............. AP012080.1_Macrhybopsis_gelida_m T.C............T..A.......T...T..C..C..G..............T.....G.....C.....T....CA. AP012083.1_Notropis_atherinoides C.C......T..G.....A..C..C....T..GC.....G...........T..............C............. AP012084.1_Notropis_baileyi_mito C.C......T........A..C..C..C.TT....................G..G.CG..G.....C...........T. AP012087.1_Cyprinella_galactura_ T.C......T..G.....G..C..C..C.TT..C....GG........G.................C............. AP012088.1_Hybopsis_lineapunctat T.C......T........A..C..C..C.TT..C..C..G.......................G..C...........T. AP012090.1_Luxilus_cornutus_mito C.C......T........A..C..C....T...C.....G........G..G........G.....T............. AP012091.1_Lythrurus_ardens_mito T.CT..............A.....C....T...C....................T...........G............. AP012092.1_Lythrurus_fumeus_mito T.C......T..C.....A..........TT..C..............G.................G...........T. AP012093.1_Lythrurus_lirus_mitoc C.C...............A.....C....T...C.....G..............T...........G............. AP012094.1_Lythrurus_umbratilis_ T.CT..............A.....C....T...C....................T...........G............. AP012095.1_Macrhybopsis_meeki_mi T.C............T..A.......TC.....T..C..............T..T...........C.....T.....A. AP012097.1_Notropis_bifrenatus_m C.C......T........A..C.......TT..T..C..G..............T.....G.....C...........T. AP012098.1_Pimephales_sp._MCZunc T.CA..............A..C....T...T..C.................G...........G..C............. AP012100.1_Notropis_telescopus_m T.C......T..G........C..C....TT..T..C..G...........G..............C............. AP012101.1_Pimephales_notatus_mi T.C...............A..C....T...T..C.................G...........G..C............. AP012102.1_Pimephales_vigilax_mi T........T.....T..A..C..A.......GC.....G..G..............C.....G..C............. AP012103.1_Pogonichthys_macrolep C.C...G....................C.....C..C.G............G..T..G...................CT. AP012106.1_Richardsonius_balteat C.C......A........T.....C..C..T..C...........G..G..G........G.....T..G........T. AP012108.1_Notropis_chrosomus_mi C.C...G..T........A..G..C..C.TT.................G........G........C.....G..G.... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T........T.....T..A..C..A.......GC.....G..G..............C.....G..C............. Pimephales_vigilax_R1S3_________ T........T.....T..A..C..A.......GC.....G..G..............C.....G..C............. DQ536429.1_Notropis_stramineus_m T.C.........C........C.......T..GC.....G...........C..............C............. JX910141.1_Squaliobarbus_curricu ...T.......................C..................................................T. KC351187.1_Squaliobarbus_curricu ...T.......................C..................................................T. KT278765.1_Pimephales_promelas_m T.C......T........G..C.......TT.GC..C..G........G..G...........G..C............. KT289925.1_Pimephales_promelas_m T.C......T........A..C.......TT.GC..C..G........G..G...........G..C............. KT424924.1_Rhinichthys_osculus_m C.C.....................C........C....................T..G........C............. KU200257.1_Chanodichthys_ilishae .................................G............................................T. MF972070.1_Siphateles_bicolor_mo C.C............T..A..C..C.....T..G..............G........T....................T. MG570407.1_Notropis_chalybaeus_v C.C......T.....T..A..C..C..C.TT...................................C............. MG570408.1_Notropis_bifrenatus_v C.C......T........A..C.......TT..T..C..G..............T.....G.....C...........T. MG570413.1_Notropis_heterolepis_ C.C......T.....T..A..C..C........C..C.................T.....G.....C............. MG570416.1_Rhinichthys_obtusus_v C.C.........G..T........C..C..T.GC.................C.....G........C.....G....... MG570417.1_Rhinichthys_obtusus_v C.C.........G..T........C..C..T.GC.................C.....G........C.....G....... MG570420.1_Pimephales_notatus_vo T.CA..............A..C....T...T..C.................G...........G..C............. MG570443.1_Notropis_hudsonius_is C.CT..G..T..G..T..G..C.......TT.GC....GG..T........T.....T..G..T..C..G..T.....T. MG570444.1_Rhinichthys_atratulus C.C.....................C.....T..T.....G...........C.....G........C............. MG570445.1_Rhinichthys_atratulus C.C.....................C.....T..T.....G...........C.....G........C............. MG570447.1_Luxilus_cornutus_isol C.C......T........A..C..C....T...C.....G........G...........G.....T............. MG570449.1_Luxilus_cornutus_isol C.C......T........A..C..C....T...C.....G........G...........G.....T............. MG570450.1_Pimephales_notatus_is T.CA..............A..C....T...T..C.................G...........G..C............. MG570451.1_Notropis_bifrenatus_i C.C......T........A..C.......TT..T..C..G..............T.....G.....C...........T. MG570453.1_Exoglossum_maxillingu T.C.....................C........T.....T...........G..T..G..G..G..C..G.......... MG570454.1_Pimephales_promelas_i T.C......T........A..C.......TT.GC..C..G........G..G...........G..C............. MG570455.1_Notropis_atherinoides C.C......T..G.....A..C..C....TT.GC.....G...........T..............C............. MG570456.1_Notropis_atherinoides C.C......T..G.....A..C..C....T..GC.....G...........T..............C............. MG570457.1_Pimephales_notatus_is T.CA..............A..C....T...T..C.................G...........G..C............. MG570458.1_Pimephales_notatus_is T.CA..............A..C....T...T..C.................G...........G..C............. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v C.C......T..G.....A..A.....C.TT.GG.................G.....C........C...........T. MT364325.1_Hybognathus_amarus_mi C.C......T........A..C..C..C.T..GC....G.........G..C..............C...........T. MT501368.1_Gila_cypha_isolate_SN T.CT.................C..C.....T..........................T.....G..C.....G.....T. MT501369.1_Notropis_simus_pecose T.C.........G.....A..C..C....TT..C..C..........................G..C............. MT501378.1_Hybognathus_amarus_is C.C......T........A..C..C..C.T..GC....G.........G..C..............C...........T. MT501385.1_Notropis_jemezanus_vo C.C......T..G........C.......T..GC.....G........G..T...........G..C..G.......... MT501391.1_Rhinichthys_osculus_i C.C.....................C.......GT.................G..T..G........C...........T. MT667239.1_Rhinichthys_osculus_t C.C.....................C.......GT.................G..T..G........C...........T. MT667242.1_Luxilus_cornutus_vouc C.C......T........A..C..C....T...C.....G........G...........G.....T............. MW300340.1_Hybognathus_placitus_ C.C......T..G.....A..C..C....T..GC.....G........G..G..............C...........T. MW300341.1_Hybognathus_placitus_ C.C......T..G.....A..C..C....T...C.....G........G.................C...........T. NC_013763.1_Mylocheilus_caurinus T.C........................C.....C..C..............G..T..G..G.................T. NC_033926.1_Opsopoeodus_emiliae_ T.C...............A..C..C..C.TT.....C..G..........................C...........T. NC_037008.1_Notropis_chalybaeus_ C.C......T.....T..A..C..C..C.TT...................................C............. NC_037009.1_Notropis_heterolepis C.C......T.....T..A..C..C........C..C.................T.....G.....C............. NC_037010.1_Rhinichthys_obtusus_ C.C.........G..T........C..C..T.GC.................C.....G........C.....G....... NC_037014.1_Notropis_hudsonius_i C.CT..G..T..G..T..G..C.......TT.GC....GG..T........T.....T..G..T..C..G..T.....T. NC_037015.1_Exoglossum_maxilling T.C.....................C........T.....T...........G..T..G..G..G..C..G.......... NC_054086.1_Ptychocheilus_lucius C.CT...........T........C.....T..........................T........C...........T. NC_054257.1_Gila_cypha_isolate_S T.CT.................C..C.....T..........................T.....G..C.....G.....T. NC_054259.1_Gila_nigrescens_isol T.C............T.....C..C.....T....................G.....T..G..G..C.....G.....T. NC_054260.1_Hybognathus_amarus_i C.C......T........A..C..C..C.T..GC....G.........G..C..............C...........T. NC_054262.1_Notropis_jemezanus_v C.C......T..G........C.......T..GC.....G........G..............G..C............. Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 C.C...G.....C.....G..C.......T..GC.....G..G.......................C............. Pimephales_tenellus_parvice_R2S2 C.C...G.....C.....G..C.......T..GC..............G..............G..C............. Pimephales_notatus_R1S1_________ T.C...............A..C..C..C.TT..C..C.................A........G..C............. MG570452.1_Pimephales_promelas_i T.C......T........A..C.......TT.GC..C..G........G..G...........G..C............. MG570452.1_Pimephales_promelas_S T.C...G..T........G..C.......TT.GC..C..G........G..G...........G..C............. AB626850.1_Megalobrama_terminali AACCCACAACTAAAGCCACCAATAGTAAAAACATAAAATAAGTCATAATTCTTGCTCGGACTTTAACCGAGACCAGTGAC AP010779.1_Mylocheilus_caurinus_ GC.......T..G...........A........C......G............A......T................... AP011215.1_Gila_sp._1460_mitocho .C...G...T.....AT..T....AC.......C..G...G..........C.....A.................A.... AP011263.1_Scardinius_erythropht GC.......T......T....G..AC.......CG.....G...................T................... AP011267.1_Algansea_lacustris_mi .T..T.....C..G..T.TT....A....G...C............GG...CC....A...............T.A.... AP011268.1_Yuriria_alta_mitochon .T....T..TC..G..T.TT.G..AC...G...C......G......G...CC....A...............T.A.... AP011273.1_Hybognathus_nuchalis_ .T..T.T..T...G..T.TT....A....G...C............GG...CC....A...............T...... AP011274.1_Couesius_plumbeus_mit .C.......TC.....T.T.....A.....G..CG.....G............A...A.........T.....T...... AP011275.1_Platygobio_gracilis_m GT.......T...G..T.T..G..A........CG.....G..........CC....A...................... AP011277.1_Erimystax_dissimilis_ .C........C.....T.TT....AC.......CG.....G..........C.A...A..T......T............ AP011279.1_Pimephales_promelas_m .T..T.T..T...G.AT.TT....A....G...C............GG...CC....A...............T.A.... AP011280.1_Clinostomus_elongatus GT.......TC.G...T....G..A........C...................A......T................... AP012079.1_Luxilus_chrysocephalu GT..T....TA..G..T.T..G..A....G...CG.....G.....GG...CC....A...............T.A.... AP012080.1_Macrhybopsis_gelida_m GT..TGT..TC.GG..T.TT....T..T..G..CG...........T....CC....A..T......T..A...TA.... AP012083.1_Notropis_atherinoides .T..T.T..TC..G..T.TT.G..A....G...CG..G........GG...CC....A...............T...... AP012084.1_Notropis_baileyi_mito .C..T.T..T......T.T.....A....G...C.............G...CC....A...............T...... AP012087.1_Cyprinella_galactura_ .C....T..T...G..T.T..G..A..G.G...CG...........GG...CCA...A..A............T...... AP012088.1_Hybopsis_lineapunctat .T..T.T..T...G..T.T.....AC...G...C.............G...C.....A...............T...... AP012090.1_Luxilus_cornutus_mito .T..T....TC..G..T.TT....A....G...CG.....G.....GG...CC....A...............T.A.... AP012091.1_Lythrurus_ardens_mito .T..T.T..T...G..T.TT....AC...G...CG..G........GG...CC....A..T............TG..... AP012092.1_Lythrurus_fumeus_mito GT..T.T..T...G..T.TT..C.A....G...C...G........GG...CC....A...............T...... AP012093.1_Lythrurus_lirus_mitoc .T..T.T..T...G..T.TT....AC...G...CG...........GG...CC....A...............T...... AP012094.1_Lythrurus_umbratilis_ .T..T.T..T...G..T.TT....AC...G...CG..G........GG...CC....A...............T...... AP012095.1_Macrhybopsis_meeki_mi GT..TGTG.TC..G..T.TT....T..T.....C...G........T....CC....A..T......T......GA.... AP012097.1_Notropis_bifrenatus_m .C..T....TA..G..T.T.....A....G.T.C.............G...CC....A...............T.A..G. AP012098.1_Pimephales_sp._MCZunc .T..T.T..T...G..T.TT.G..A....G.T.C............GG...CC....A..............GT.A.... AP012100.1_Notropis_telescopus_m .T..T.T..T......T.TT.G..A....G...C............GG...CC....A...............T...... AP012101.1_Pimephales_notatus_mi .T..T.T..T...G..T.TT.G..A....G.T.C............GG...CC....A...............T.A.... AP012102.1_Pimephales_vigilax_mi .T..T.T..T......T.T...C.A..T.G...CG............G...C.A...A...............T.A.... AP012103.1_Pogonichthys_macrolep .C...G..........T....G..A........C......G............A......T................... AP012106.1_Richardsonius_balteat .T.......TC.G...T.......A........C......G............A......T................... AP012108.1_Notropis_chrosomus_mi .T..T.T..T......T.TT....A....G...C............GG...CC....A...............T...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .T..T.T..T......T.T...C.A..T.G...CG............G...C.A...A...............T.A.... Pimephales_vigilax_R1S3_________ .T..T.T..T......T.T...C.A..T.G...CG............G...C.A...A...............T.A.... DQ536429.1_Notropis_stramineus_m GT..T.T..T...G..T.TT.GC.A....G...CG...........GG...CC....A...............T...... JX910141.1_Squaliobarbus_curricu ................T.......AC.........G............................................ KC351187.1_Squaliobarbus_curricu ................T.......AC.........G............................................ KT278765.1_Pimephales_promelas_m .T..T.T..T...G..T.TT....A....G...C............GG...CC....A...............T.A.... KT289925.1_Pimephales_promelas_m .T..T.T..T...G..T.TT....A....G...C............GG...CC....A...............T.A.... KT424924.1_Rhinichthys_osculus_m .T..T....TC.....T.TT....A......A.CG.....G..........C.....A...................... KU200257.1_Chanodichthys_ilishae ..........C.G...T.......AC..................................T.C................. MF972070.1_Siphateles_bicolor_mo .C.......TC.....T.....C.A........C..G...G..........C.....A.................A.... MG570407.1_Notropis_chalybaeus_v .T..T.T..T...G..T.T.....A....G...C............GG...CC....A...............T.A.... MG570408.1_Notropis_bifrenatus_v .C..T....TA..G..T.T.....A....G.T.C.............G...CC....A...............T.A..G. MG570413.1_Notropis_heterolepis_ .T....T..T......T.TT....A....G...CG...........GG...CC....A...............T.A.... MG570416.1_Rhinichthys_obtusus_v .T.......T......T.TA.G..A........CG.....G..........C.....A..T................... MG570417.1_Rhinichthys_obtusus_v .T.......T......T.TA.G..A........CG.....G..........C.....A..T................... MG570420.1_Pimephales_notatus_vo .T..T.T..T...G..T.TT.G..A....G.T.C............GG...CC....A...............T.A.... MG570443.1_Notropis_hudsonius_is .T..T.T..T......T.TT.G..AC...G.T.CG.....G.....GG...C.....A..T................... MG570444.1_Rhinichthys_atratulus GC.......TC.....T.TA.G..A........C......G..........C.....A..T..............A.... MG570445.1_Rhinichthys_atratulus GC.......TC.....T.TA.G..A........C......G..........C.....A..T................... MG570447.1_Luxilus_cornutus_isol .T..T....TC..G..T.TT....A....G...CG.....G.....GG...CC....A...............T.A.... MG570449.1_Luxilus_cornutus_isol .T..T....TC..G..T.TT....A....G...CG.....G.....GG...CC....A...............T.A.... MG570450.1_Pimephales_notatus_is .T..T.T..T...G..T.TT....A....G.T.C............GG...CC....A...............T.A.... MG570451.1_Notropis_bifrenatus_i .C..T....TA..G..T.T.....A....G.T.C.............G...CC....A...............T.A..G. MG570453.1_Exoglossum_maxillingu .C........C.....T.TT....AC.......CG.....G..........C.A...A..T......T............ MG570454.1_Pimephales_promelas_i .T..T.T..T......T.TT....A....G...C............GG...CC....A...............T.A.... MG570455.1_Notropis_atherinoides .T..T.T..TC.....T.TT.G..A....G...CG..G........GG...CC....A...............T...... MG570456.1_Notropis_atherinoides .T....T..TC.GG..T.TT.G..A....G...CG..G........GG...CC....A...............T...... MG570457.1_Pimephales_notatus_is .T..T.T..T...G..T.TT.G..A....G.T.C............GG...CC....A...............T.A.... MG570458.1_Pimephales_notatus_is .T..T.T..T...G..T.TT.G..A....G.T.C............GG...CC....A...............T.A.... MK421554.1_Parabramis_pekinensis ................T............................................................... MT333789.1_Notropis_lutipinnis_v GT..T.T..T........TT....A..G.G.T.C...G........GG...CC....A...............T...... MT364325.1_Hybognathus_amarus_mi .T..T.T..T...G..T.TT....A....G...C............GG...CC....A...............T...... MT501368.1_Gila_cypha_isolate_SN .C.......T......T.......A........C..G...G..........C.....A.................A.... MT501369.1_Notropis_simus_pecose .T..T.T..T...G..T.TT.G..AC...G...C............GG...CC....A...............T.A.... MT501378.1_Hybognathus_amarus_is .T..T.T..T...G..T.TT....A....G...C............GG...CC....A...............T...... MT501385.1_Notropis_jemezanus_vo .T..T.T..TC.....T.TT.G..A....G...CG...........GG...CC....A...............T...... MT501391.1_Rhinichthys_osculus_i .T.......TC.....G.TT.GC.A........CG.....G..........CC....A.........T............ MT667239.1_Rhinichthys_osculus_t .T.......TC.....G.TT..C.A........CG.....G..........CC....A.........T............ MT667242.1_Luxilus_cornutus_vouc GT..T....TC..G..T.TT....A....G...CG.....G.....GG...CC....A...............T.A.... MW300340.1_Hybognathus_placitus_ .T..T.T..TC..G..T.TT....A....G...CG...........GG...CC....A...............T...... MW300341.1_Hybognathus_placitus_ .T..T.T..TC..G..T.TT....A....G...CG...........GG...CC....A...............T...... NC_013763.1_Mylocheilus_caurinus GC.......T..G...........A........C......G............A......T................... NC_033926.1_Opsopoeodus_emiliae_ .C....T.........T.......A....G.T.C............GG...CC....A...............T.A.... NC_037008.1_Notropis_chalybaeus_ .T..T.T..T...G..T.T.....A....G...C............GG...CC....A...............T.A.... NC_037009.1_Notropis_heterolepis .T....T..T......T.TT....A....G...CG...........GG...CC....A...............T.A.... NC_037010.1_Rhinichthys_obtusus_ .T.......T......T.TA.G..A........CG.....G..........C.....A..T................... NC_037014.1_Notropis_hudsonius_i .T..T.T..T......T.TT.G..AC...G.T.CG.....G.....GG...C.....A..T................... NC_037015.1_Exoglossum_maxilling .C........C.....T.TT....AC.......CG.....G..........C.A...A..T......T............ NC_054086.1_Ptychocheilus_lucius .C.......T......T.......A........C..G...G..........C.....A.................A.... NC_054257.1_Gila_cypha_isolate_S .C.......T......T.......A........C..G...G..........C.....A.................A.... NC_054259.1_Gila_nigrescens_isol GC.......T.....AT.......A........C..G...G..........C.....A..T..............A.... NC_054260.1_Hybognathus_amarus_i .T..T.T..T...G..T.TT....A....G...C............GG...CC....A...............T...... NC_054262.1_Notropis_jemezanus_v .T..T.T..TC..G..T.TT.G..A....G...CG...........GG...CC....A...............T...... Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 .T..T...........T.TT.G..A....G.T.C............GG...CC....A...............T.A.... Pimephales_tenellus_parvice_R2S2 .T..T...........T.TT.G..A....G.T.C............GG...CC....A...............T.A.... Pimephales_notatus_R1S1_________ .T..T....TC..G..T.TT....A....G...C............GG...CC....A...............T.A.... MG570452.1_Pimephales_promelas_i .T..T.T..T...G..T.TT....A....G...C............GG...CC....A...............T.A.... MG570452.1_Pimephales_promelas_S .T..T.T..T...G..T.TT....A....G...C............GG...CC....A...............T.A.... AB626850.1_Megalobrama_terminali TTGAAGAACCACCGTTGT---AGTTCAACTACAAGAACAA--TAATGGCAAGCCTACGAAAAACCCATCCACTAATAAAA AP010779.1_Mylocheilus_caurinus_ ..................---.AC...............C-C......................T..C..GT........ AP011215.1_Gila_sp._1460_mitocho ..................---.A..........G......--............................C......... AP011263.1_Scardinius_erythropht ..................---...................--.........................C..G.....T... AP011267.1_Algansea_lacustris_mi ........A.........---.A..........G......-T.........................C............ AP011268.1_Yuriria_alta_mitochon ..................---.A..........G......-T.........................C...........G AP011273.1_Hybognathus_nuchalis_ ..................---.A..........G......-T...................................... AP011274.1_Couesius_plumbeus_mit ..................---TA........T.......G-C......................T............... AP011275.1_Platygobio_gracilis_m ........A.........---.A..........G......--.........................C...T.G...... AP011277.1_Erimystax_dissimilis_ ........A.........---TA..........G....G.-T.........................C............ AP011279.1_Pimephales_promelas_m ..................---.A.........GG....G.-T.........................C.....G...... AP011280.1_Clinostomus_elongatus ..................----A................C--......................G..C..G......... AP012079.1_Luxilus_chrysocephalu ..................---.A..........G......--.........................C............ AP012080.1_Macrhybopsis_gelida_m ........A..T......ACC.A..........G...T..TT.............................T........ AP012083.1_Notropis_atherinoides ..................---.A..........G......--.........................C........T... AP012084.1_Notropis_baileyi_mito ..................---.A..........G......-T.........................C............ AP012087.1_Cyprinella_galactura_ .......G...A......---.A..........G.....G--.........................C............ AP012088.1_Hybopsis_lineapunctat ..................---.A...............G.TT.........................C..G......... AP012090.1_Luxilus_cornutus_mito ..................---.A..........G......--.........................C............ AP012091.1_Lythrurus_ardens_mito ..................---.A..........G......--.........................C..G......... AP012092.1_Lythrurus_fumeus_mito ..................---.A..........G......-T.........................C..C......... AP012093.1_Lythrurus_lirus_mitoc ..................---.A..........G......--.........................C............ AP012094.1_Lythrurus_umbratilis_ ..................---.A..........G......--.........................C..G......... AP012095.1_Macrhybopsis_meeki_mi ........A..T......ACC.A......C...G......TT...................................... AP012097.1_Notropis_bifrenatus_m ..................---.A..........G......--.........................C............ AP012098.1_Pimephales_sp._MCZunc ..................---.A..........G......--.........................C............ AP012100.1_Notropis_telescopus_m ..................---.A..........G......-T.........................C..G.....T... AP012101.1_Pimephales_notatus_mi ..................---.A..........G......--.........................C............ AP012102.1_Pimephales_vigilax_mi ..................---.A..........G......--......................T........G...... AP012103.1_Pogonichthys_macrolep ..................---.AC...............T-C.........................C............ AP012106.1_Richardsonius_balteat ..................---CA........T.......C--.........................C..CT........ AP012108.1_Notropis_chrosomus_mi ..................---.A..........G......--.........................C........G... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..................---.A..........G......--......................T........G...... Pimephales_vigilax_R1S3_________ ..................---.A..........G......--......................T........G...... DQ536429.1_Notropis_stramineus_m ..................---.A..........G......-T................T.....T..C..G......... JX910141.1_Squaliobarbus_curricu ..................---...................--.........................C............ KC351187.1_Squaliobarbus_curricu ..................---...................--.........................C............ KT278765.1_Pimephales_promelas_m ..................---.A..........G......-T.........................C.....G...... KT289925.1_Pimephales_promelas_m ..................---.A.........GG......-T.........................C.....G..G... KT424924.1_Rhinichthys_osculus_m ..................---CA.................--......................T..C............ KU200257.1_Chanodichthys_ilishae ..................---...................--.........................C............ MF972070.1_Siphateles_bicolor_mo ..................---.A..........G......--.........................C............ MG570407.1_Notropis_chalybaeus_v ..................---.A..........G......-T.........................C..G.....T... MG570408.1_Notropis_bifrenatus_v ..................---.A..........G......--.........................C............ MG570413.1_Notropis_heterolepis_ ..................---.A..........G......-T.........................C............ MG570416.1_Rhinichthys_obtusus_v ........A.........---.A.................--.........................C.....G...... MG570417.1_Rhinichthys_obtusus_v ........A.........---.A.................--.........................C.....G...... MG570420.1_Pimephales_notatus_vo ..................---.A..........G......--.........................C............ MG570443.1_Notropis_hudsonius_is ........A.........---.A...............G.-T.........................C..T......... MG570444.1_Rhinichthys_atratulus ........A.........---.A..........G......--.........................C............ MG570445.1_Rhinichthys_atratulus ........A.........---.A..........G......--.........................C............ MG570447.1_Luxilus_cornutus_isol ..................---.A..........G......--.........................C............ MG570449.1_Luxilus_cornutus_isol ..................---.A..........G......--.........................C............ MG570450.1_Pimephales_notatus_is ..................---.A..........G......--.........................C............ MG570451.1_Notropis_bifrenatus_i ..................---.A..........G......--.........................C............ MG570453.1_Exoglossum_maxillingu ........A.........---TA..........G....G.-T.........................C............ MG570454.1_Pimephales_promelas_i ..................---.A.........GG......-T.........................C.....G..G... MG570455.1_Notropis_atherinoides ..................---.A..........G......--.........................C........T... MG570456.1_Notropis_atherinoides ..................---.A..........G......--.........................C........T... MG570457.1_Pimephales_notatus_is ..................---.A..........G......--.........................C............ MG570458.1_Pimephales_notatus_is ..................---.A..........G......--.........................C............ MK421554.1_Parabramis_pekinensis ..................---...................--...................................... MT333789.1_Notropis_lutipinnis_v .......G..........---TA................G--................T........C..G........G MT364325.1_Hybognathus_amarus_mi ..................---.A..........G......-T...................................... MT501368.1_Gila_cypha_isolate_SN ..................---.A..........G......--.........................C..C......... MT501369.1_Notropis_simus_pecose ...........A......---.A..........G......-T.........................C..G..G...... MT501378.1_Hybognathus_amarus_is ..................---.A..........G......-T...................................... MT501385.1_Notropis_jemezanus_vo ..................---.A..........G.....G--.........................C........T... MT501391.1_Rhinichthys_osculus_i ..................---CA..........G......--.........................C............ MT667239.1_Rhinichthys_osculus_t ..................---CA..........G......--.........................C............ MT667242.1_Luxilus_cornutus_vouc ..................---.A..........G......--.........................C............ MW300340.1_Hybognathus_placitus_ ..................---.A..........G......--.........................C..G......... MW300341.1_Hybognathus_placitus_ ..................---.A..........G......--.........................C..G......... NC_013763.1_Mylocheilus_caurinus ..................---.AC...............C-C......................T..C..GT........ NC_033926.1_Opsopoeodus_emiliae_ ..................---.A..........G.....G--.........................C............ NC_037008.1_Notropis_chalybaeus_ ..................---.A..........G......-T.........................C..G.....T... NC_037009.1_Notropis_heterolepis ..................---.A..........G......-T.........................C............ NC_037010.1_Rhinichthys_obtusus_ ........A.........---.A.................--.........................C.....G...... NC_037014.1_Notropis_hudsonius_i ........A.........---.A...............G.-T.........................C..T......... NC_037015.1_Exoglossum_maxilling ........A.........---TA..........G....G.-T.........................C............ NC_054086.1_Ptychocheilus_lucius ..................---.A..........G......--............................C......... NC_054257.1_Gila_cypha_isolate_S ..................---.A..........G......--.........................C..C......... NC_054259.1_Gila_nigrescens_isol ..................---.A..........G......--.........................C..C......... NC_054260.1_Hybognathus_amarus_i ..................---.A..........G......-T...................................... NC_054262.1_Notropis_jemezanus_v ..................---.A..........G.....G--.........................C........T... Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 ..................---.A..........G......--.........................C........C... Pimephales_tenellus_parvice_R2S2 ..................---.A..........G......--.........................C........C... Pimephales_notatus_R1S1_________ ..................---.A..........G......--...................................... MG570452.1_Pimephales_promelas_i ..................---.A.........GG......-T.........................C.....G..G... MG570452.1_Pimephales_promelas_S ..................---.A.........GG......-T.........................C.....G...... AB626850.1_Megalobrama_terminali ATCGCCAACGACGCACTAGTTGACCTTCCCACACCATCTAATATTTCTGTGTGATGAAACTTCGGGTCCCTCCTAGGACT AP010779.1_Mylocheilus_caurinus_ .....T..............C.....C..A.....T...........A.CAATG..G..T.....A............T. AP011215.1_Gila_sp._1460_mitocho ...........T.................A..............C..A..AAT.........T..A............T. AP011263.1_Scardinius_erythropht .....T..T...........C.....C..A.....C...........A.C.CT............A.............. AP011267.1_Algansea_lacustris_mi ..T..T.....T...T.G...........A........A..C.....A.CAATG...........A.....A..G...T. AP011268.1_Yuriria_alta_mitochon ..T..T.....T.................A........A........A.CA.T............C.....G.....G.. AP011273.1_Hybognathus_nuchalis_ .....T..T..T.................A........A.....C..A.CAAT............A..G..G......T. AP011274.1_Couesius_plumbeus_mit .....T..T.GT...T.......T..C..A........C........A.CACTC.......................... AP011275.1_Platygobio_gracilis_m .....T..T..T........C........A...........C..C..A..TAT............A.....G......T. AP011277.1_Erimystax_dissimilis_ .....T..T..T..............C..A..T..C...........C.CACT...G..............T........ AP011279.1_Pimephales_promelas_m ..T..T..T.GT..............C..A..G..............A.CACT............A..T..A..G...T. AP011280.1_Clinostomus_elongatus .....T..T.................C..A..C..G..............AATG...........A............T. AP012079.1_Luxilus_chrysocephalu .....T..T..T........C........A........C.....C..A.C.CT............A.....T......T. AP012080.1_Macrhybopsis_gelida_m .....T..T...........C.....C..A.....G........C..A..AAT............A.....T......T. AP012083.1_Notropis_atherinoides ........T.GT.................A........A........A.C.CT...G........A.....G.....GT. AP012084.1_Notropis_baileyi_mito .....T..T..T...........T.....A.....C..A..C..C..A.CACT...G........A..TT.A......T. AP012087.1_Cyprinella_galactura_ .....T..T.GT..............C..A..C................CACTG........T..A.....A.....GT. AP012088.1_Hybopsis_lineapunctat ........T..T...T....C........A.....C..A.....C..A.CACT............A..T..GT.....T. AP012090.1_Luxilus_cornutus_mito .....T..T.GT.................A........A.....C..A.CACT............A............T. AP012091.1_Lythrurus_ardens_mito .....T..T.G....T.............A........A.....C..A.CAATG...........A.....G..C...T. AP012092.1_Lythrurus_fumeus_mito .....T..T......T.............A........G.....C..A.CAATG...........A...........GT. AP012093.1_Lythrurus_lirus_mitoc .....T..T.G....T.............A........A.....C..A.CAATG.................G..C...T. AP012094.1_Lythrurus_umbratilis_ .....T..T.G....T.............A........A.....C..A.CAATG...........A.....G..C...T. AP012095.1_Macrhybopsis_meeki_mi .....T..T..T..............C..A..............C..A..AAT.........T..A..T..T......T. AP012097.1_Notropis_bifrenatus_m .....T..T..T.................A........A........A.C.CT............A..T..A......T. AP012098.1_Pimephales_sp._MCZunc .....T..T.....G.....C........A..T.....A........A...AT............A..T..T..G..GT. AP012100.1_Notropis_telescopus_m .....T..T..T..............C..A..G.....G.....C..A.CA.T............C.....A......T. AP012101.1_Pimephales_notatus_mi .....T..T.....G.....C........A..T.....A........A.C.CT............A.....T..G...T. AP012102.1_Pimephales_vigilax_mi .....T..T......T.......T.....A........A........A.C.CT............A..T..T......T. AP012103.1_Pogonichthys_macrolep .....T..............C.....C..A.................A.CACT......T.....C......T....... AP012106.1_Richardsonius_balteat .....T..T......T....C..T..C..A.....G...........C...AT............A............T. AP012108.1_Notropis_chrosomus_mi .....T..T....................A..T.....A..C..C..G.CACT.........T.....T..A......T. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .....T..T......T.......T.....A........A........A.C.CT............A..T..T......T. Pimephales_vigilax_R1S3_________ .....T..T......T.......T.....A........A........A.C.CT............A..T..T......T. DQ536429.1_Notropis_stramineus_m .....T.....T.....G..C........A..G.....A........A..AAT............A..A..G......T. JX910141.1_Squaliobarbus_curricu ....................C..T..C..A....................A...........T........T......T. KC351187.1_Squaliobarbus_curricu ....................C..T..C..A....................A...........T........T......T. KT278765.1_Pimephales_promelas_m ..T..T..T..T..............C..A.................A.CACT............A..T..T..G...T. KT289925.1_Pimephales_promelas_m ..T..T..T..T..............C..A..G..............A.CACT............A..T..A..G...T. KT424924.1_Rhinichthys_osculus_m .....T.......................A..C..............A.CACT.........................T. KU200257.1_Chanodichthys_ilishae ..........................C..............C.....C..A........T........T.....G..GT. MF972070.1_Siphateles_bicolor_mo .....T.....T..............C..A..G.....C........A..AAT.........T..A..T.........T. MG570407.1_Notropis_chalybaeus_v .....T.....T.................A........A..C..C..A.CACT...G........A.....G......T. MG570408.1_Notropis_bifrenatus_v .....T..T..T.................A........A........A.C.CT............A..T..A......T. MG570413.1_Notropis_heterolepis_ .....T....GT........C.....C..A..............C..A.CACT...G........A..T..AT.G...T. MG570416.1_Rhinichthys_obtusus_v ..........GT..G.....C.....C..A...........C.....A.C.CT...G.................T...T. MG570417.1_Rhinichthys_obtusus_v ..........GT..G.....C.....C..A...........C.....A.C.CT...G.................T...T. MG570420.1_Pimephales_notatus_vo .....T..T.....G.....C........A..T.....A........A...AT............A..T..T..G..GT. MG570443.1_Notropis_hudsonius_is .....T..T..T.....T...........A........A..C..C..A.CACTC.....T........T..A..C...T. MG570444.1_Rhinichthys_atratulus ..........GT..G.....C.....C..A..............C..A.C.CT...G........C........G...T. MG570445.1_Rhinichthys_atratulus ..........GT..G.....C.....C..A..............C..A.C.CT...G........C........G...T. MG570447.1_Luxilus_cornutus_isol .....T..T.GT.................A........A.....C..A.CACT............A............T. MG570449.1_Luxilus_cornutus_isol .....T..T.GT.................A........A.....C..A.CACT............A............T. MG570450.1_Pimephales_notatus_is .....T..T.....G.....C........A..T.....A........A...AT............A..T..T..G..GT. MG570451.1_Notropis_bifrenatus_i .....T..T..T.................A........A........A.C.CT............A..T..A......T. MG570453.1_Exoglossum_maxillingu .....T..T..T..............C..A..T..C...........C.CACT...G..............T........ MG570454.1_Pimephales_promelas_i ..T..T..T..T..............C..A..G..............A.CACT............A..T..A..G...T. MG570455.1_Notropis_atherinoides ........T.GT.................A........A........A.CACT...G........A.....G.....GT. MG570456.1_Notropis_atherinoides ........T.GT.................A........A........A.C.CT...G........A.....G.....GT. MG570457.1_Pimephales_notatus_is .....T..T.....G.....C........A..T.....A........A...AT............A..T..T..G..GT. MG570458.1_Pimephales_notatus_is .....T..T.....G.....C........A..T.....A........A...AT............A..T..T..G..GT. MK421554.1_Parabramis_pekinensis ...................................G............................................ MT333789.1_Notropis_lutipinnis_v .....T.....T.................A........A..C..C..A.CACTG........T..A..T..G......T. MT364325.1_Hybognathus_amarus_mi .....T..T..T.....G...........A........A.....C..A.CAAT............A..T..G......T. MT501368.1_Gila_cypha_isolate_SN ...........T..............C..A.................A...AT.........T..A............T. MT501369.1_Notropis_simus_pecose ........T..T.................A........C..C..C..G.CACTG...........A........G...T. MT501378.1_Hybognathus_amarus_is .....T..T..T.....G...........A........A.....C..A.CAAT............A..T..G......T. MT501385.1_Notropis_jemezanus_vo ........T.GT..............C..A........A........G.CACT............A.....GT.G..GT. MT501391.1_Rhinichthys_osculus_i ..T..T.....T........C........A..T..............A.CACT...G........A............T. MT667239.1_Rhinichthys_osculus_t ..T..T.....T........C........A..T...........C..A.C.CT...G........A..T.........T. MT667242.1_Luxilus_cornutus_vouc .....T..T.GT.................A........A.....C..A.CACT............A............T. MW300340.1_Hybognathus_placitus_ .....T..T...........C.................A.....C..A.CAAT...G........A..T........... MW300341.1_Hybognathus_placitus_ .....T..T...........C.................A.....C..A.CAAT...G........A..T........... NC_013763.1_Mylocheilus_caurinus .....T..............C.....C..A.....T...........A.CAATG..G..T.....A............T. NC_033926.1_Opsopoeodus_emiliae_ ..T..T..T..A......A..........T......G..........A.CAAT.........T..A..T..T.....GT. NC_037008.1_Notropis_chalybaeus_ .....T.....T.................A........A..C..C..A.CACT...G........A.....G......T. NC_037009.1_Notropis_heterolepis .....T....GT........C.....C..A..............C..A.CACT...G........A..T..AT.G...T. NC_037010.1_Rhinichthys_obtusus_ ..........GT..G.....C.....C..A...........C.....A.C.CT...G.................T...T. NC_037014.1_Notropis_hudsonius_i .....T..T..T.....T...........A........A..C..C..A.CACTC.....T........T..A..C...T. NC_037015.1_Exoglossum_maxilling .....T..T..T..............C..A..T..C...........C.CACT...G..............T........ NC_054086.1_Ptychocheilus_lucius .....T....................C..A.................A..AAT.........T..A............T. NC_054257.1_Gila_cypha_isolate_S ...........T..............C..A.................A...AT.........T..A............T. NC_054259.1_Gila_nigrescens_isol ...........T.....G........C..G.....G.....C.....A...AT.........T..A............T. NC_054260.1_Hybognathus_amarus_i .....T..T..T.....G...........A........A.....C..A.CAAT............A..T..G......T. NC_054262.1_Notropis_jemezanus_v ........T.GT..............C..A........A........G.CACT............A.....GT.G..GT. Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 .....T..T..T...T.............A.................A.CA.T......T.....A..T...T....... Pimephales_tenellus_parvice_R2S2 .....T..T..T...T.............A.................A.CA.T......T.....A..T..TT....... Pimephales_notatus_R1S1_________ .....T..T..............T.....A........A........A.C.CT............A..T..T.....GT. MG570452.1_Pimephales_promelas_i ..T..T..T..T..............C..A..G..............A.CACT............A..T..A..G...T. MG570452.1_Pimephales_promelas_S ..T..T..T.GT..............C..A..G..............A.CACT............A..T..A..G...T. AB626850.1_Megalobrama_terminali ATGTTTAATCACCCAAATCCTAACCGGACTATTCCTAGCCATACACTACACCTCTGACATCTCAACCGCATTTTCATCAG AP010779.1_Mylocheilus_caurinus_ ...C.....T..............A...........G.............................T.....C....... AP011215.1_Gila_sp._1460_mitocho .........T........T..G..A...T....TT...............................T............. AP011263.1_Scardinius_erythropht ....C....T..T...........A..G..G..T........G..................................... AP011267.1_Algansea_lacustris_mi .........T..T........C...........T..G.....G..T........G........G...........G..C. AP011268.1_Yuriria_alta_mitochon ...C.....T..T...............T.G..T..G.....G..T................................C. AP011273.1_Hybognathus_nuchalis_ ...C.....T...........G......T....T.....G.................T........T.....C.....C. AP011274.1_Couesius_plumbeus_mit .........T........T.....A...T...................T.................T............. AP011275.1_Platygobio_gracilis_m ...CC.T..T..T...............T.............G....................G.....C..C..C..T. AP011277.1_Erimystax_dissimilis_ ...C.....T..T...........A.................G..T...........T...................... AP011279.1_Pimephales_promelas_m ...C.....T..T..............TT....T.....A....................T..T........C.....C. AP011280.1_Clinostomus_elongatus ...C.....T..............G...T.....T...................C..T........T.....C.....T. AP012079.1_Luxilus_chrysocephalu ...CC....T..................T.............G..T..T.....C........G..............C. AP012080.1_Macrhybopsis_gelida_m .........T..T...........A........TT....T.................T..............C.....C. AP012083.1_Notropis_atherinoides G..C.....T..T........G....................G..T...........T.....G..T.....C..G..C. AP012084.1_Notropis_baileyi_mito ...C.....T..T........C......T.............G.....T.............................C. AP012087.1_Cyprinella_galactura_ G..C.....T..T......T........T.G..T.....A.....T..T..............G...........G..T. AP012088.1_Hybopsis_lineapunctat ...C.....T..T..G...T..........G..............T..T.................T...........C. AP012090.1_Luxilus_cornutus_mito G...C....T..................T..........T..G..T..T..........................C..C. AP012091.1_Lythrurus_ardens_mito G..C.....T..T..G..T.....A...T.G...T..........T..T.............................C. AP012092.1_Lythrurus_fumeus_mito ....C.......T...............T....TT.......G.....T.....C.....T..G..T...........T. AP012093.1_Lythrurus_lirus_mitoc G..C.....T..T...............T.....T..........T..T.............................C. AP012094.1_Lythrurus_umbratilis_ G..C.....T..T..G..T.....A...T.G...T..........T..T.............................C. AP012095.1_Macrhybopsis_meeki_mi ...C.....T..T...........A...T....TT....T..............A..T....................T. AP012097.1_Notropis_bifrenatus_m ...C.....T..T........T......T.G..T.....T..G.....T........T....................C. AP012098.1_Pimephales_sp._MCZunc .........T..T........T......T..........A.....T..T.....C..T.....T..............C. AP012100.1_Notropis_telescopus_m ...C.....T..T.....T.........T....T........G..T..........................C.....C. AP012101.1_Pimephales_notatus_mi .........T..T........T......T....T..G..A.....T..T.....C..T.....T..............C. AP012102.1_Pimephales_vigilax_mi .........T..T..G............T....T.....A........T........T.....T..............C. AP012103.1_Pogonichthys_macrolep ...C.....T..............A...........G.....G..T..T........T........T.....C....... AP012106.1_Richardsonius_balteat G........T...........G..A.........T.......G.....T........T........T.....C....... AP012108.1_Notropis_chrosomus_mi G..C.....T..T...............T....T.....G..G..............T....................C. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .........T..T..G............T....T.....A........T........T.....T..............C. Pimephales_vigilax_R1S3_________ .........T..T..G............T....T.....A........T........T.....T..............C. DQ536429.1_Notropis_stramineus_m ...C.....T..T..G........G...T.G...T....A..G..T..T.................T.....C.....C. JX910141.1_Squaliobarbus_curricu G..C.....T........................T......................T...................... KC351187.1_Squaliobarbus_curricu G..C.....T........................T......................T...................... KT278765.1_Pimephales_promelas_m ...C.....T..T..............TT..........A........T........T..T..T..............C. KT289925.1_Pimephales_promelas_m ...C.....T..T..............TT....T.....A.................T..T..T........C.....C. KT424924.1_Rhinichthys_osculus_m ...C.....T..T......T....A....................T..T..T..C..T........T..C.......... KU200257.1_Chanodichthys_ilishae G........T..T...............T.G.................T............................... MF972070.1_Siphateles_bicolor_mo .........T........T..G..A..G.....TT......................T........T............. MG570407.1_Notropis_chalybaeus_v ...C.....T..T........T......T....T.....G..G.....T..........................G..C. MG570408.1_Notropis_bifrenatus_v ...C.....T..T........T......T.G..T.....T..G.....T........T....................C. MG570413.1_Notropis_heterolepis_ ...C.....T..T...............T....T........G..............T....................C. MG570416.1_Rhinichthys_obtusus_v ...C.....T..T..G...T....A........T.....T.....T..T........T........T...........C. MG570417.1_Rhinichthys_obtusus_v ...C.....T..T..G...T....A........T.....T.....T..T........T........T...........C. MG570420.1_Pimephales_notatus_vo .........T..T........T......T..........A.....T..T.....C..T.....T..............C. MG570443.1_Notropis_hudsonius_is G..C.....T..T..G..............C.....C........T....................T...........T. MG570444.1_Rhinichthys_atratulus .........T..............A..............T.....T..T........T........T...........C. MG570445.1_Rhinichthys_atratulus .........T..............A........T.....T.....T..T........T........T...........C. MG570447.1_Luxilus_cornutus_isol ....C....T..................T..........T..G..T.............................C..C. MG570449.1_Luxilus_cornutus_isol ....C....T..................T..........T..G..T.............................C..C. MG570450.1_Pimephales_notatus_is .........T..T........T......T..........A.....T..T.....C..T.....T..............C. MG570451.1_Notropis_bifrenatus_i ...C.....T..T........T......T.G..T.....T..G.....T........T....................C. MG570453.1_Exoglossum_maxillingu ...C.....T..T...........A.................G..T...........T...................... MG570454.1_Pimephales_promelas_i ...C.....T..T..............TT....T.....A.................T..T..T........C.....C. MG570455.1_Notropis_atherinoides ...C.....T..T........G....................G..T...........T.....G..T.....C..G..C. MG570456.1_Notropis_atherinoides G..C.....T..T........G....................G..T...........T.....G..T.....C..G..C. MG570457.1_Pimephales_notatus_is .........T..T........T......T..........A.....T..T.....C..T.....T..............C. MG570458.1_Pimephales_notatus_is .........T..T........T......T..........A.....T..T.....C..T.....T..............C. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...C.....T.............................G.....T........A..T....................C. MT364325.1_Hybognathus_amarus_mi G..C.....T..................T....T.....A.................T........T.....C..C..C. MT501368.1_Gila_cypha_isolate_SN .........T........T..G..A..G.....TT.......G.....T............................... MT501369.1_Notropis_simus_pecose ...C........T...............T..........T.................T.................G..C. MT501378.1_Hybognathus_amarus_is G..C.....T..................T....T.....A.................T........T.....C..C..C. MT501385.1_Notropis_jemezanus_vo G..C........T..G.....G.....G..T........T.....T..T........T.....G..T..G..C..C..C. MT501391.1_Rhinichthys_osculus_i ...C..G..T..G...........A.....G.....G.....G..T..T..T..C..T........T..C.....G.... MT667239.1_Rhinichthys_osculus_t ...C..G..T..G......T....A...........G.....G..T..T..T..C..T........T..C.....G.... MT667242.1_Luxilus_cornutus_vouc ....C....T..................T..........T..G..T.............................C..C. MW300340.1_Hybognathus_placitus_ G..C.....T..T..G...T....T........T.....A........T........T........T...........C. MW300341.1_Hybognathus_placitus_ G..C.....T..T..G...T.............T.....A........T........T........T...........C. NC_013763.1_Mylocheilus_caurinus ...C.....T..............A...........G.............................T.....C....... NC_033926.1_Opsopoeodus_emiliae_ G........T..T.....TT....G...........G..A.................T.....T..............C. NC_037008.1_Notropis_chalybaeus_ ...C.....T..T........T......T....T.....G..G.....T..........................G..C. NC_037009.1_Notropis_heterolepis ...C.....T..T...............T....T........G..............T....................C. NC_037010.1_Rhinichthys_obtusus_ ...C.....T..T..G...T....A........T.....T.....T..T........T........T...........C. NC_037014.1_Notropis_hudsonius_i G..C.....T..T..G..............C.....C........T....................T...........T. NC_037015.1_Exoglossum_maxilling ...C.....T..T...........A.................G..T...........T...................... NC_054086.1_Ptychocheilus_lucius .........T..............A...T....TT...........................................G. NC_054257.1_Gila_cypha_isolate_S .........T........T..G..A..G.....TT.......G.....T............................... NC_054259.1_Gila_nigrescens_isol .........T........T..G..A...T....T.............................................. NC_054260.1_Hybognathus_amarus_i G..C.....T..................T....T.....A.................T........T.....C..C..C. NC_054262.1_Notropis_jemezanus_v G..C........T..G.....G.....G..T........T.....T..T........T.....G..T..G..C..C..C. Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 ...C.....T..G........G.....GT.......T..A.....T..............T..T..............C. Pimephales_tenellus_parvice_R2S2 ...C.....T..G........G.....GT.......T..A.....T..............T..T..............C. Pimephales_notatus_R1S1_________ .........T..T...............T..........A.................T.....T..............T. MG570452.1_Pimephales_promelas_i ...C.....T..T..............TT....T.....A.................T..T..T........C.....C. MG570452.1_Pimephales_promelas_S ...C.....T..T..............TT....T.....A....................T..T........C.....C. AB626850.1_Megalobrama_terminali TGGTTCACATCTGCCGAGACGTAAACTATGGCTGACTCATCCGTAATATTCACGCTAACGGAGCATCATTCTTTTTCATC AP010779.1_Mylocheilus_caurinus_ ..ACA...........G.....T..............T.....A..C..G.....C.................C...... AP011215.1_Gila_sp._1460_mitocho .AACC.................T..............T.....A.G.C.A..T..C..T..C.....G.....C...... AP011263.1_Scardinius_erythropht .AACC..T..T...........T.....C........T.....A.GCC.A..T..C...........C.....C...... AP011267.1_Algansea_lacustris_mi .CACA.....T..T........T.....C.....G........A..C..A..T.....T..C..T........C...... AP011268.1_Yuriria_alta_mitochon .TACA.....T.....G.....C...................AA..C..A..T..C..............T..C...... AP011273.1_Hybognathus_nuchalis_ .CACA..T..T.....G.....C..............T.....A..C..A..T.....T..C.....C..T..C...... AP011274.1_Couesius_plumbeus_mit ...CC..T..T........T.....T..C........T.....A...C.A..T..C.................C..T... AP011275.1_Platygobio_gracilis_m .CACA........T........T.....C..A.....T.....A.....G..T..............G.....C...... AP011277.1_Erimystax_dissimilis_ .AACA........T........T..T.....T...........A.....A..T..C.................C...... AP011279.1_Pimephales_promelas_m .CACA..T..T..T..G.....T..T..C..............A.....A.....C.....C........T..C...... AP011280.1_Clinostomus_elongatus .AACA..T........G..T..T.................T..A.....A..T..C.....C...........C...... AP012079.1_Luxilus_chrysocephalu .CACG.....T.....G..T..T........T.....T.....A.....A..T..C.................C..T... AP012080.1_Macrhybopsis_gelida_m .AACA.....T.................C........T.....A..C..A..T..C.................C...... AP012083.1_Notropis_atherinoides .CACG.....T.....G.....C..............T.....A..C..A..T........G........T..C.....T AP012084.1_Notropis_baileyi_mito .TAC......T..T........C..............T.....A..C..A..T..C..............T..C...... AP012087.1_Cyprinella_galactura_ .CACA..T..T........T..C.....C........A.....A..C..G..T..C..............T..C..T... AP012088.1_Hybopsis_lineapunctat .CACA.....T.....G.....T..T...........T.....A.....A..T..C.................C...... AP012090.1_Luxilus_cornutus_mito .CACG.....T.....G.....C..............T.....A.....A..T..C..T........T..T..C...... AP012091.1_Lythrurus_ardens_mito .CACA.....T.....T.....C........T.....T.....A.....A..T..C..T........G..T..C...... AP012092.1_Lythrurus_fumeus_mito .TACA.....T.....T.....C.....C.....G..T.....G..C..A..T..C.....G........T..C.....T AP012093.1_Lythrurus_lirus_mitoc .CACA.....T.....T.....T.....C..T.....T.....A.....A..T..C.....G........T..C...... AP012094.1_Lythrurus_umbratilis_ .CACA.....T.....T.....C........T..G..T.....A.....A..T..C..............T..C...... AP012095.1_Macrhybopsis_meeki_mi .AACA..T..T..T..............C........T.....A.....A..T........G...........C..T... AP012097.1_Notropis_bifrenatus_m .CAC......T...........T..T.....T..G..T..T..A.....G.....C..T..............C..T... AP012098.1_Pimephales_sp._MCZunc .CACG...........G.....C..............T.....A..C..G..T..C.....C...........C...... AP012100.1_Notropis_telescopus_m .TAC......T.....G.....C..............T.....A.....A..T..C.....C........T..C..T... AP012101.1_Pimephales_notatus_mi .TACG...........G.....C..............T.....A..C..G..T..C.....C...........C...... AP012102.1_Pimephales_vigilax_mi .CACA..T..T...........T..T.....T.....T.....G..C..A..T........C........T..C..T..T AP012103.1_Pogonichthys_macrolep ..ACA..............T..T...........G........A..C..A..T.....T...........T..C...... AP012106.1_Richardsonius_balteat .AACA.....T.....G..T..T.................T..G..C..A..T..C.....C...........C...... AP012108.1_Notropis_chrosomus_mi .TAC......T.....G.....C.....C........T.....G..C..G..T..............C.....C...... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .CACA..T..T...........T..T.....T.....T.....G..C..A..T........C........T..C..T..T Pimephales_vigilax_R1S3_________ .CACA..T..T...........T..T.....T.....T.....G..C..A..T........C........T..C..T..T DQ536429.1_Notropis_stramineus_m .CACA...........G.....C.....C........T.....A..C..G..T..C.....C........T..C...... JX910141.1_Squaliobarbus_curricu .A..C...........T..T........C........T..T......T.A.......................C...... KC351187.1_Squaliobarbus_curricu .A..C...........T..T........C........T..T......T.A.......................C...... KT278765.1_Pimephales_promelas_m .CACA..T.....T..G.....T..T..C........T.....A.....A..T..C.....C........T..C...... KT289925.1_Pimephales_promelas_m .CACA..T..T..T..G.....T..T.................A.....A..T..C.....C........T..C...... KT424924.1_Rhinichthys_osculus_m .AACA.................T..T...........T.....A..C..A..T....................C..T... KU200257.1_Chanodichthys_ilishae .A..C.................G..............T.................C.....G..............T... MF972070.1_Siphateles_bicolor_mo .AACC.................T..T...........T.....A.GCC.A..T........C.....C.....C...... MG570407.1_Notropis_chalybaeus_v .CAC...T..T.....C.....T...C..........T..T..G.....A..T..C..............T..C...... MG570408.1_Notropis_bifrenatus_v .CAC......T...........T..T.....T..G..T..T..A.....G.....C..T..............C..T... MG570413.1_Notropis_heterolepis_ .CACA.................T..T.....T.....T..T..G..C..A..T..C..............T..C..T... MG570416.1_Rhinichthys_obtusus_v .AACA........T..T..T.....T..............T..G..C..G..T..C.....C...........C..T... MG570417.1_Rhinichthys_obtusus_v .AACA........T..T..T.....T..............T..G..C..G..T..C.....C...........C..T... MG570420.1_Pimephales_notatus_vo .CACG...........G.....C..............T.....A..C..G..T..C.....C...........C...... MG570443.1_Notropis_hudsonius_is .TACA..T..T...........T..T.....T..G........A.....A..T..C.....C.....C.....C...... MG570444.1_Rhinichthys_atratulus .AACA........T..T..T.....T..............T..G.....A..T........C...........C...... MG570445.1_Rhinichthys_atratulus .AACA........T..T..T.....T..............T..G.....A..T........C...........C...... MG570447.1_Luxilus_cornutus_isol .CACG.....T.....G.....C..............T.....A.....A..T..C..T........T..T..C...... MG570449.1_Luxilus_cornutus_isol .CACG.....T.....G.....C..............T.....A.....A..T..C..T........T..T..C...... MG570450.1_Pimephales_notatus_is .CACG...........G.....C..............T.....A..C..G..T..C.....C...........C...... MG570451.1_Notropis_bifrenatus_i .CAC......T...........T..T.....T..G..T..T..A.....G.....C..T..............C..T... MG570453.1_Exoglossum_maxillingu .AACA........T........T..T.....T...........A.....A..T..C.................C...... MG570454.1_Pimephales_promelas_i .CACA..T..T..T..G..T..T..T.................A.....A..T..C.....C........T..C...... MG570455.1_Notropis_atherinoides .CACG.....T.....G.....C..............T.....A..C..A..T........G........T..C.....T MG570456.1_Notropis_atherinoides .CACG.....T.....G.....C..............T.....A..C..A..T........G........T..C.....T MG570457.1_Pimephales_notatus_is .CACG...........G.....C..............T.....A..C..G..T..C.....C...........C...... MG570458.1_Pimephales_notatus_is .CACG...........G.....C..............T.....A..C..G..T..C.....C...........C...... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .TACC..T..T.....G.....C.....C........T.....A.....A..T..A...........C.....C...... MT364325.1_Hybognathus_amarus_mi .TACA..T..T.....G.....C...........G..T.....A..C..A..T.....T..C.....C..T..C...... MT501368.1_Gila_cypha_isolate_SN .AACC.................T..............T.....A.GCC.A..T.....T..............C...... MT501369.1_Notropis_simus_pecose .CAC......T.....G.....C.....C..............A..C..A........T..C........T..C...... MT501378.1_Hybognathus_amarus_is .TACA..T..T.....G.....C...........G..T.....A..C..A..T.....T..C.....C..T..C...... MT501385.1_Notropis_jemezanus_vo .CACG.....T...........C..............T.....G..C..A..T.................T..C.....T MT501391.1_Rhinichthys_osculus_i .AACA.................T....................A..C..A..T....................C..T... MT667239.1_Rhinichthys_osculus_t .AACA.................T....................A..C..A..T....................C..T... MT667242.1_Luxilus_cornutus_vouc .CACG.....T.....G.....C..............T.....A.....A..T..C..T........T..T..C...... MW300340.1_Hybognathus_placitus_ .TACA..T..T.....G.....T..............T.....A..C..G..T..............C..T..C...... MW300341.1_Hybognathus_placitus_ .TACA..T..T.....G.....T..............T.....A..C..G..T..............C..T..C...... NC_013763.1_Mylocheilus_caurinus ..ACA...........G.....T..............T.....A..C..G.....C.................C...... NC_033926.1_Opsopoeodus_emiliae_ .CAC......T.....G..T.....T..C........T..T........A..T..C.....G...........C.....T NC_037008.1_Notropis_chalybaeus_ .CAC...T..T.....C.....T...C..........T..T..G.....A..T..C..............T..C...... NC_037009.1_Notropis_heterolepis .CACA.................T..T.....T.....T..T..G..C..A..T..C..............T..C..T... NC_037010.1_Rhinichthys_obtusus_ .AACA........T..T..T.....T..............T..G..C..G..T..C.....C...........C..T... NC_037014.1_Notropis_hudsonius_i .TACA..T..T...........T..T.....T..G........A.....A..T..C.....C.....C.....C...... NC_037015.1_Exoglossum_maxilling .AACA........T........T..T.....T...........A.....A..T..C.................C...... NC_054086.1_Ptychocheilus_lucius .AACC.................T..............T.....A.G.C.A..T.....T........G.....C...... NC_054257.1_Gila_cypha_isolate_S .AACC.................T..............T.....A.GCC.A..T.....T..............C...... NC_054259.1_Gila_nigrescens_isol .AAC..................T..............T.....A.G.C.A..T.....T..............C..T... NC_054260.1_Hybognathus_amarus_i .TACA..T..T.....G.....C...........G..T.....A..C..A..T.....T..C.....C..T..C...... NC_054262.1_Notropis_jemezanus_v .CACG.....T...........C..............T.....G..C..A..T.................T..C.....T Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 .CACA.....T...........T.....C........T.....A.....A..T..C..............T..C...... Pimephales_tenellus_parvice_R2S2 .TACA.....T...........T.....C........T.....A..C..A..T..C..............T..C...... Pimephales_notatus_R1S1_________ .CACA..T..T..T..G.....C..............T.....A..C..G..T..C.....C...........C...... MG570452.1_Pimephales_promelas_i .CACA..T..T..T..G..T..T..T.................A.....A..T..C.....C........T..C...... MG570452.1_Pimephales_promelas_S .CACA..T..T..T..G.....T..T..C..............A.....A.....C.....C........T..C...... AB626850.1_Megalobrama_terminali TGCATTTACATACATATTGCCCGCGGCCTATACTATGGATCCTACCTGTATAAAGAAACCTGAAACATTGGAGTAGTCCT AP010779.1_Mylocheilus_caurinus_ ..T..C..T.....C........A...........C...........C........G...........C..C..T..T.. AP011215.1_Gila_sp._1460_mitocho ..T.....T.....C........A...........C..G..A..T..T.....G..G........T.....C........ AP011263.1_Scardinius_erythropht ..TC....T........C..A..G..A.....T.....G..A.....T..C.....G........T.....T........ AP011267.1_Algansea_lacustris_mi .....C.....G..C.....T........C.....C..G.....T..T........G........T.....G..C..... AP011268.1_Yuriria_alta_mitochon ..T..C..T..G..C..............T.....C..G..T..T..C..C..G..G..............G........ AP011273.1_Hybognathus_nuchalis_ ..T.....T..G..C..............T.....C.....T.....C..C.......................C..... AP011274.1_Couesius_plumbeus_mit ..T..C........C.......................G.....T..T.....G...........T.....C..G..G.. AP011275.1_Platygobio_gracilis_m ..T...........C.......................G........T..C.....G........T.....G..T..A.. AP011277.1_Erimystax_dissimilis_ ..T.....T..............T...........C..G..A.....T.......................G..C..... AP011279.1_Pimephales_promelas_m ..T...........C.....T..T.....T..T..C...........C..C..............T........C..A.. AP011280.1_Clinostomus_elongatus ..T.....T..G..C........A...........C..G..A.....T........G...........C..C.....G.. AP012079.1_Luxilus_chrysocephalu ..T.....T.....C.....T..T.....T.....C..G........T.....G....................C..... AP012080.1_Macrhybopsis_gelida_m ..T.....T.....C........T...........C.....T.....T.....G...........T........C..... AP012083.1_Notropis_atherinoides ..T.....T..G..C........T...........C..G........C..C.......................C..... AP012084.1_Notropis_baileyi_mito ..T.....T.....C........T..A..T.....C..G........A........G.....G..T........C..A.. AP012087.1_Cyprinella_galactura_ ..T..C........C........A..A.....T..C..G..T.....T..C........A..............T...T. AP012088.1_Hybopsis_lineapunctat ..T....................A.....C........G........C...........T.....T........C..A.. AP012090.1_Luxilus_cornutus_mito ..T...........C.....T..T.....T.....C...........T........G...........C..G..C..... AP012091.1_Lythrurus_ardens_mito ..T.....T.....C..C..T..T..T..T.....C..G..T.....C..C..G..G........T........T..T.. AP012092.1_Lythrurus_fumeus_mito ..T.................T..T.....T........G..T.....C..C..G.................G..T..T.. AP012093.1_Lythrurus_lirus_mitoc ..T.....T..G..C..C.....T..T..T.....C..C........A..C..G...........T..C..G..T..... AP012094.1_Lythrurus_umbratilis_ ..T.....T.....C..C..T..T..T..T.....C..G..T.....C..C..G..G........T........T..T.. AP012095.1_Macrhybopsis_meeki_mi ..T.....T.....C........T...........C.....T.....T.................T.....G..T..... AP012097.1_Notropis_bifrenatus_m ..T.....T.....C.....T..A...........C...........C.................T........TA.... AP012098.1_Pimephales_sp._MCZunc ........T..G..C.....T..T.....T..T...........T..CA.........................C..A.. AP012100.1_Notropis_telescopus_m ..T...........C.....T..T.....T........G........C..C.....G..............T..T..T.. AP012101.1_Pimephales_notatus_mi ........T.....C..C..T..T.....T..T...........T..C..........................C..A.. AP012102.1_Pimephales_vigilax_mi ..T.....T.....C..C..T..T.....T..T..C.....T..T..T..C..G....................T..A.. AP012103.1_Pogonichthys_macrolep ..T..C........C........G...T.......C........T..C.....G..............C..C..C..... AP012106.1_Richardsonius_balteat ..T....................T...........C..G..A.....T.....G.................C..G..A.. AP012108.1_Notropis_chrosomus_mi ........T..G........T..T.....T..T..C..G..A..T..T..C..G..G........T.....G..C..T.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..T.....T.....C..C..T..T.....T..T..C.....T..T..T..C..G....................T..A.. Pimephales_vigilax_R1S3_________ ..T.....T.....C..C..T..T.....T..T..C.....T..T..T..C..G....................T..A.. DQ536429.1_Notropis_stramineus_m ........T..G..C.....T........T.................T........G..T.....T.....G..T..... JX910141.1_Squaliobarbus_curricu ..T.....T.....C.....T..T........T..............A..C.................C..G........ KC351187.1_Squaliobarbus_curricu ..T.....T.....C.....T..T........T..............A..C.................C..G........ KT278765.1_Pimephales_promelas_m ..T...........C.....T..T.....T.....C..G........C..C..............T........C..A.. KT289925.1_Pimephales_promelas_m ..T...........C.....T..T.....T..T..C...........C..C..............T........C..A.. KT424924.1_Rhinichthys_osculus_m ..T.....T.....C...........G..C...........G.....C.......................C.....T.. KU200257.1_Chanodichthys_ilishae ..T.....T.....C........................................................G........ MF972070.1_Siphateles_bicolor_mo ..T.....T.....C.....A..A...........C..G..A.....T........G........T.....T........ MG570407.1_Notropis_chalybaeus_v .....C.....G........T.....A..T.....C..G.....T..T..C..............T.............. MG570408.1_Notropis_bifrenatus_v ..T.....T.....C.....T..A...........C...........C.................T........TA.... MG570413.1_Notropis_heterolepis_ ..T..C........C........T.....T.....C..G........T........G..............G..C..... MG570416.1_Rhinichthys_obtusus_v ..T...........C..............C.....C..C..A.....T.....G..G.........G....T.....T.. MG570417.1_Rhinichthys_obtusus_v ..T...........C..............C.....C..C..A.....T.....G..G.........G....T.....T.. MG570420.1_Pimephales_notatus_vo ........T..G..C.....T..T.....T..T...........T..C..........................C..A.. MG570443.1_Notropis_hudsonius_is ..T.....T..G..C........T.....T.....C........T..T................C.........T..... MG570444.1_Rhinichthys_atratulus ..T.....T.....C..............C.....C..C..A.....T.................T.....T.....T.. MG570445.1_Rhinichthys_atratulus ..T.....T.....C..............C.....C..C..A.....T.................T.....T.....T.. MG570447.1_Luxilus_cornutus_isol ..T...........C.....T..T.....T.....C...........T........G...........C..G..C..... MG570449.1_Luxilus_cornutus_isol ..T...........C.....T..T.....T.....C...........T........G...........C..G..C..... MG570450.1_Pimephales_notatus_is ........T..G..C.....T..T.....T..T...........T..C..........................C..A.. MG570451.1_Notropis_bifrenatus_i ..T.....T.....C.....T..A...........C...........C.................T........TA.... MG570453.1_Exoglossum_maxillingu ..T.....T..............T...........C..G..A.....T.......................G..C..... MG570454.1_Pimephales_promelas_i ..T...........C.....T..T.....T..T..C.....T.....C..C..............T........C..A.. MG570455.1_Notropis_atherinoides ..T.....T..G..C........T...........C...........C..C.......................C..... MG570456.1_Notropis_atherinoides ..T.....T..G..C........T...........C..G........C..C.......................C..... MG570457.1_Pimephales_notatus_is ........T..G..C.....T..T.....T..T...........T..C..........................C..A.. MG570458.1_Pimephales_notatus_is ........T..G..C.....T..T.....T..T...........T..C..........................C..A.. MK421554.1_Parabramis_pekinensis .................C.............................................................. MT333789.1_Notropis_lutipinnis_v .....C........C.....T..T.....T..T..C..G..T..T..T..C...........G..T........T..G.. MT364325.1_Hybognathus_amarus_mi ..T.....T..G..C.....G.....T..T.....C..G........T..C.......................C..... MT501368.1_Gila_cypha_isolate_SN ..T.....T..............A..............G..A.....T........G........T.....T........ MT501369.1_Notropis_simus_pecose ..T.....T..G..C........T.....C..T..C...........C........G........T.....G..C..... MT501378.1_Hybognathus_amarus_is ..T.....T..G..C.....G.....T..T.....C..G........T..C.......................C..... MT501385.1_Notropis_jemezanus_vo ..T........G..C........T.....G.....C...........C..C..............T........C..... MT501391.1_Rhinichthys_osculus_i ..T.....T.....C...........A..G........G..T.....C........G.......C......C..G..... MT667239.1_Rhinichthys_osculus_t ..T.....T.....C...........A..G........G..T.....C........G.......C......C..G..... MT667242.1_Luxilus_cornutus_vouc ..T...........C.....T..T.....T.....C...........T........G...........C..G..C..... MW300340.1_Hybognathus_placitus_ ..T...........C.....T..T.....T.....C..G..T..T..C..C.......................C..T.. MW300341.1_Hybognathus_placitus_ ..T...........C.....T..T.....T.....C..G..T..T..T..C.......................C..T.. NC_013763.1_Mylocheilus_caurinus ..T..C..T.....C........A...........C...........C........G...........C..C..T..T.. NC_033926.1_Opsopoeodus_emiliae_ ..T.....T..G........T..T.....T..T..C...........TA................T........T..A.. NC_037008.1_Notropis_chalybaeus_ .....C.....G........T.....A..T.....C..G.....T..T..C..............T.............. NC_037009.1_Notropis_heterolepis ..T..C........C........T.....T.....C..G........T........G..............G..C..... NC_037010.1_Rhinichthys_obtusus_ ..T...........C..............C.....C..C..A.....T.....G..G.........G....T.....T.. NC_037014.1_Notropis_hudsonius_i ..T.....T..G..C........T.....T.....C........T..T................C.........T..... NC_037015.1_Exoglossum_maxilling ..T.....T..............T...........C..G..A.....T.......................G..C..... NC_054086.1_Ptychocheilus_lucius ..T.....T..G..C........A...........C..G..A..T..T..C.....G........T.....T........ NC_054257.1_Gila_cypha_isolate_S ..T.....T..............A..............G..A.....T........G........T.....T........ NC_054259.1_Gila_nigrescens_isol ..T...........C........A..T........C..G..A.....T........G........T.....T........ NC_054260.1_Hybognathus_amarus_i ..T.....T..G..C.....G.....T..T.....C..G........T..C.......................C..... NC_054262.1_Notropis_jemezanus_v ..T........G..C........T.....G.....C...........C..C..............T........C..... Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 ..T...........C..C..T..T.....T.....C........T..C.....G..G........T...........A.. Pimephales_tenellus_parvice_R2S2 ..T...........C..C..T..T.....T.....C........T..C.....G..G........T...........A.. Pimephales_notatus_R1S1_________ ........T..G........T..T.....T..T..C..G.....T..C.....G....................C..A.. MG570452.1_Pimephales_promelas_i ..T...........C.....T..T.....T..T..C.....T.....C..C..............T........C..A.. MG570452.1_Pimephales_promelas_S ..T...........C.....T..T.....T..T..C...........C..C..............T........C..A.. AB626850.1_Megalobrama_terminali TCTCCTTTTAGTCATGATAACAGCCTTCGTCGGCTACGTCCTTCCGTGAGGACAGATATCCTTTTGAGGTGCCACAGTAA AP010779.1_Mylocheilus_caurinus_ A..T...C...................T..T........A..C........G..A.....T...........T..C.... AP011215.1_Gila_sp._1460_mitocho A........G.....A.....C..............T..G..C..A..G..C..A..G..A........C.......... AP011263.1_Scardinius_erythropht AT.T.....G..T.....G..G...........T.....A.....A.....G..A..G..............T..C.... AP011267.1_Algansea_lacustris_mi A..T........A..A...........T..A.....T..A........G..T..A........C..............C. AP011268.1_Yuriria_alta_mitochon A..T...C.G..T..A.....C.....T..A........A.....C.....T..A..G.................C..C. AP011273.1_Hybognathus_nuchalis_ A..T........A..A..G........T..A.....T..T..C..A.....T..A..G...........A.....C..T. AP011274.1_Couesius_plumbeus_mit A..T.....G.................T..T.....T.....C..A..G..G..A.....T.................C. AP011275.1_Platygobio_gracilis_m G..T..CC....T.....G..C..T..T..A........A.....C.....T..A..G.....C........T..C.... AP011277.1_Erimystax_dissimilis_ A..T...C.G.....A..G...........G.....T..A..C..A........A.....T..............T..C. AP011279.1_Pimephales_promelas_m A..T...C.C..T..A...........T..A.....T..A..C..A.....G...........C..............C. AP011280.1_Clinostomus_elongatus A..T...C....G..A...........T..T...........G..A........A...........G........T..C. AP012079.1_Luxilus_chrysocephalu A..T..CC....T..A..G........T..G..T.....A..C..A..G..C..A........C...........G..T. AP012080.1_Macrhybopsis_gelida_m ...T..AC.......A.....T..T..T..G..T..T..A..C..A.....T..A........C...........C.... AP012083.1_Notropis_atherinoides A..T...C.C..T..A..G........T..A..T..T..T..C..A.....C..A........C...........C..C. AP012084.1_Notropis_baileyi_mito A..T...C....T..A..G.....T..T..G.....T..A..C..A.....C..A..G.....C...........C..C. AP012087.1_Cyprinella_galactura_ A..T..CC.......A...........T..A..A.....G..C..A..G..T.....G.....C...........C..C. AP012088.1_Hybopsis_lineapunctat ......CC....T..A..G..G.....T..T..T..T..A.....A.....C..A....................C..C. AP012090.1_Luxilus_cornutus_mito A..T..CC.T..T.....G........T..T........A..C..A.....C..A........C...........C..C. AP012091.1_Lythrurus_ardens_mito A..T...C....T..A.....C........G.....T..A..C..A.....T..A........C........G..C..T. AP012092.1_Lythrurus_fumeus_mito A..T...C....T........C.....T..A.....T.....C........C..A..G..T..C..G..C.....C..T. AP012093.1_Lythrurus_lirus_mitoc G..T...C....T..A..G..C........G.....T..A..G..C..G..T..A........C...........C..T. AP012094.1_Lythrurus_umbratilis_ A..T...C....T..A.....C........G.....T..A..C..A.....T..A..G.....C........G..C..T. AP012095.1_Macrhybopsis_meeki_mi ...T..A.....T..A.....T..T..T..G..T..T..A..C..A.....C..A........C...........C.... AP012097.1_Notropis_bifrenatus_m .......C....T..A..G........T..A.....T..G..C..A........A........C...........C..T. AP012098.1_Pimephales_sp._MCZunc A..T..CC.G..T..A.....G.....T..G.....T..A..C..A.....C..A........C.....C.....G.... AP012100.1_Notropis_telescopus_m A..T........T.....G..C.....T..A.....T..A..C..A.....G..A..G..T..C...........C..C. AP012101.1_Pimephales_notatus_mi A..T..CC....T..............T..G.....T..A..C..A.....C..A........C.....C.....G.... AP012102.1_Pimephales_vigilax_mi ...T...C.G..T..A..G........T..A........A.....A.....T...........C..............T. AP012103.1_Pogonichthys_macrolep A..T...C.......A.................T.....A..C..A........A..G..T........C.....C.... AP012106.1_Richardsonius_balteat A..T...C.......A...........T..T.....T..T..C..A..............T...........T..C.... AP012108.1_Notropis_chrosomus_mi A..T...C....T..A..G........T..A.....T..A..C..A..G..G..A..G.....C.....G.....C..T. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...T...C.G..T..A..G........T..A........A.....A.....T...........C..............T. Pimephales_vigilax_R1S3_________ ...T...C.G..T..A..G........T..A........A.....A.....T...........C..............T. DQ536429.1_Notropis_stramineus_m A......C....T.....G........T..G..T..T..A..C..A.....C..A..G.....C...........C..T. JX910141.1_Squaliobarbus_curricu A.....AC....T....AG...........T...........C..A........A..G.....C.....C.....G.... KC351187.1_Squaliobarbus_curricu A.....AC....T.....G...........T...........C..A........A..G.....C.....C.......... KT278765.1_Pimephales_promelas_m A..T...C.C..T..A...........T..A.....T..A..C..A.....G..A........C..............C. KT289925.1_Pimephales_promelas_m A..T...C.C..T..A...........T..A.....T..A..C..A.....G...........C..............C. KT424924.1_Rhinichthys_osculus_m A..T........T.....G........T..A.....T..AT.A..A........A.....T.....G.....T..C.... KU200257.1_Chanodichthys_ilishae ......G.....T..A...........T..T..............A........A......................... MF972070.1_Siphateles_bicolor_mo A........G..T..A.....C...........T..T..A..C..A.....C..A.....T........G.......... MG570407.1_Notropis_chalybaeus_v A..T...C.G..A..A..G........T........T..A.....A.....T..A..G..T..C...........C..C. MG570408.1_Notropis_bifrenatus_v .......C....T..A..G........T..A.....T..G..C..A........A........C...........C..T. MG570413.1_Notropis_heterolepis_ G..T...C....T..............T..A..T.....A..C..A..G.....A..G..T..C...........C..T. MG570416.1_Rhinichthys_obtusus_v A..T...C....T..A..G...........A.....T..A..C..A..G..T..A..G..T........G.....C..G. MG570417.1_Rhinichthys_obtusus_v A..T...C....T..A..G...........A.....T..A..C..A..G..T..A..G..T........G.....C..G. MG570420.1_Pimephales_notatus_vo A..T..CC.G..T..A.....G.....T..G.....T..A..C..A.....C..A........C.....C.....G.... MG570443.1_Notropis_hudsonius_is G..T..CC.G..T..A...........T..A..T.....A.....T.....T..A.....T........G..T..C..C. MG570444.1_Rhinichthys_atratulus A..T...C....T.....G..G........G.....T..A..C..A..G..C..A..G..T........C.....C.... MG570445.1_Rhinichthys_atratulus A..T...C....T.....G...........G.....T..A..C..A..G..C..A..G..T........C.....C.... MG570447.1_Luxilus_cornutus_isol A..T..CC.G..T.....G........T..T........A..C..A.....C..A........C...........C..C. MG570449.1_Luxilus_cornutus_isol A..T..CC.G..T.....G........T..T........A..C..A.....C..A........C...........C..C. MG570450.1_Pimephales_notatus_is A..T..CC.G..T..A.....G.....T..G.....T..A..C..A.....C..A........C.....C.....G.... MG570451.1_Notropis_bifrenatus_i .......C....T..A..G........T..A.....T..G..C..A........A........C...........C..T. MG570453.1_Exoglossum_maxillingu A..T...C.G.....A..G...........G.....T..A..C..A........A.....T..............T..C. MG570454.1_Pimephales_promelas_i A..T...C.C..T..A...........T..A.....T..A..C..A.....G...........C..............C. MG570455.1_Notropis_atherinoides A..T...C.C..T..A..G........T..A..T..T..T..C..A.....C..A........C...........C..C. MG570456.1_Notropis_atherinoides A..T...C.C..T..A..G........T..A..T..T..T..C..A.....C..A........C...........C..C. MG570457.1_Pimephales_notatus_is A..T..CC.G..T..A.....G.....T..G.....T..A..C..A.....C..A........C.....C.....G.... MG570458.1_Pimephales_notatus_is A..T..CC.G..T..A.....G.....T..G.....T..A..C..A.....C..A........C.....C.....G.... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v A..T........A..A..G........T..G.....T..A.....A.....T..A..G.....C..G..G.....C..T. MT364325.1_Hybognathus_amarus_mi A..T........A..A..G..G.....T..A.....T..T..C..A.....T..A..G.................C..C. MT501368.1_Gila_cypha_isolate_SN A...........T..A.....C..............T..A.....A..G..C..A.....G........C.......... MT501369.1_Notropis_simus_pecose A..T..CC.G..T..A..G........T..T.....T.....G..A.....G..A..G.....C...........C..C. MT501378.1_Hybognathus_amarus_is A..T........A..A..G..G.....T..A.....T..T..C..A.....T..A..G.................C..C. MT501385.1_Notropis_jemezanus_vo A..T...C.C..T.....G........T..G..T.....T..C..A.....C..A..G.....C...........C..T. MT501391.1_Rhinichthys_osculus_i A........G.....A.....G........A.....T..G..A.....G..T..A.....T.....G..C.....C..C. MT667239.1_Rhinichthys_osculus_t A........G.....A.....G........A.....T..G..A.....G..T..A.....T........C.....C..C. MT667242.1_Luxilus_cornutus_vouc A..T..CC.G..T.....G........T..T........A..C..A.....C..A........C...........C..C. MW300340.1_Hybognathus_placitus_ A..T..CC.G..A.....G..G........A.....T.....C..A..G..C..A..G...........G.....C..C. MW300341.1_Hybognathus_placitus_ A..T..CC.G..A.....G..G........A.....T.....C..A..G..C..A..G...........G.....C..C. NC_013763.1_Mylocheilus_caurinus A..T...C...................T..T........A..C........G..A.....T...........T..C.... NC_033926.1_Opsopoeodus_emiliae_ A..T...C....T.....G........T..A...........A..A.....T..A........C........T.....T. NC_037008.1_Notropis_chalybaeus_ A..T...C.G..A..A..G........T........T..A.....A.....T..A..G..T..C...........C..C. NC_037009.1_Notropis_heterolepis G..T...C....T..............T..A..T.....A..C..A..G.....A..G..T..C...........C..T. NC_037010.1_Rhinichthys_obtusus_ A..T...C....T..A..G...........A.....T..A..C..A..G..T..A..G..T........G.....C..G. NC_037014.1_Notropis_hudsonius_i G..T..CC.G..T..A...........T..A..T.....A.....T.....T..A.....T........G..T..C..C. NC_037015.1_Exoglossum_maxilling A..T...C.G.....A..G...........G.....T..A..C..A........A.....T..............T..C. NC_054086.1_Ptychocheilus_lucius A...........T..A.....C.....T........T..A.....A..G..C..A.....T........A.......... NC_054257.1_Gila_cypha_isolate_S A...........T..A.....C..............T..A.....A..G..C..A.....G........C.......... NC_054259.1_Gila_nigrescens_isol A...........T..A.....C..............T..A..C..A..G..C..A.....A........C.......... NC_054260.1_Hybognathus_amarus_i A..T........A..A..G..G.....T..A.....T..T..C..A.....T..A..G.................C..C. NC_054262.1_Notropis_jemezanus_v A..T...C.C..T.....G........T..A..T.....T..C..A.....C..A..G.....C...........C..T. Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 A......C....T..A...........T..A.....T..T..C..A..G..T..A.....G..C..............T. Pimephales_tenellus_parvice_R2S2 A......C.G.....A...........T..A.....T..T..C..A..G..T..A.....A..C................ Pimephales_notatus_R1S1_________ A..T...C....T..A...........T..A........A..C..A.....C..A........C.....C.......... MG570452.1_Pimephales_promelas_i A..T...C.C..T..A...........T..A.....T..A..C..A.....G...........C..............C. MG570452.1_Pimephales_promelas_S A..T...C.C..T..A...........T..A.....T..A..C..A.....G...........C..............C. AB626850.1_Megalobrama_terminali TCACAAATCTACTATCAGCAGTTCCTTACATGGGAGATACCCTTGTTCAATGAATTTGAGGTGGCTTCTCGGTAGACAAC AP010779.1_Mylocheilus_caurinus_ .T......T......................A..T..C........C.....G..C..............A......... AP011215.1_Gila_sp._1460_mitocho .T.....CT..T..........A.....T.....G..C.................C.....G.................. AP011263.1_Scardinius_erythropht .T.....C..C..C........C..C........T....................C.....C..T.....A......... AP011267.1_Algansea_lacustris_mi .T..............T.....A.....T..A..T..C..T.....A..............G.....T..A......... AP011268.1_Yuriria_alta_mitochon .T........T...........A.....T..A.....C.....C..G..............A..T.....A.....T... AP011273.1_Hybognathus_nuchalis_ .T........T.................T.....T...........G........C.....G.....T..A.....T... AP011274.1_Couesius_plumbeus_mit .T..C..C..G...........C.....T..A.....C...........G...........G........A......... AP011275.1_Platygobio_gracilis_m .T.....C...T.......G..C..A..T.....C..C........C..............A.....T..T.....T... AP011277.1_Erimystax_dissimilis_ .T.........T..........C.....T..A..C..CG.......C...........G.....A..T........T... AP011279.1_Pimephales_promelas_m .T.................G..A..A..T.....G...........A..............G.....T..A..G..T..T AP011280.1_Clinostomus_elongatus .T..........................T.....C..C........C........C.....C........A.....T... AP012079.1_Luxilus_chrysocephalu .T........TT.G........A........A.....C.....C..G..............G.....T..A.....T... AP012080.1_Macrhybopsis_gelida_m .T.........T..........C.....T..A..C..C........C........C.....A.....T..C.....T..T AP012083.1_Notropis_atherinoides .T........C...........A.....T.....G...........G..............G..G..T..A.....T... AP012084.1_Notropis_baileyi_mito ....C..C..T...........A.....T..A.....C........C........C.....G.....T..A.....T... AP012087.1_Cyprinella_galactura_ .T........T...........A........A.....C.....A..G..............G..A.....A......... AP012088.1_Hybopsis_lineapunctat ..........T...........G.....T..A.....C........G....................T..A.....T... AP012090.1_Luxilus_cornutus_mito .T..G..C..C...........A........A..G..C........A..............G........A.....T... AP012091.1_Lythrurus_ardens_mito .T..G..C..T........G..G.................T.....G........C.....A.....T........T... AP012092.1_Lythrurus_fumeus_mito ....G..C..C........G..A........A..C.....T.....A..G.....C.....G.....T........T... AP012093.1_Lythrurus_lirus_mitoc .T..G..C..T...........A...........T.....T.....C........C.....G.....T..A.....T... AP012094.1_Lythrurus_umbratilis_ .T..G..C..T......A.G..A........A........T.....G........C.....A.....T........T... AP012095.1_Macrhybopsis_meeki_mi .T.........T..........C.....T..A..C..C........C..............G.....T..C.....T..T AP012097.1_Notropis_bifrenatus_m .T........T..T.....G..A.....T.....T...........A..............G.....T..A.....T... AP012098.1_Pimephales_sp._MCZunc .T.....C..C...........A..C.....A..G.....T.....G..............G.....T..A......... AP012100.1_Notropis_telescopus_m ..........T...........A..C..T........C........A..G...........A..A..T..A..T..T... AP012101.1_Pimephales_notatus_mi .T.....C..C...........A..C.....A..G.....T.....G..............G.....T..A......... AP012102.1_Pimephales_vigilax_mi .T........T..G........A..C.....A..G........C.................G..T..T..A.....T... AP012103.1_Pogonichthys_macrolep .T.....CT...................T..A..T..C........C........C.....G........A......... AP012106.1_Richardsonius_balteat .T..G........G.................A..C..C........C........C.....G........A.....T... AP012108.1_Notropis_chrosomus_mi .T........C........G..A.....T..A.....C........C..............G.....T..A.....T..T AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .T........T..G........A..C.....A..G........C.................G..T..T..A.....T... Pimephales_vigilax_R1S3_________ .T........T..G........A..C.....A..G........C.................G..T..T..A.....T... DQ536429.1_Notropis_stramineus_m .T..C..C..T.....G.....C.....T..A..G........C..G..............G.....T........T... JX910141.1_Squaliobarbus_curricu .T..G..C..GT................T..A.....C.....C..C.......................A.....T..T KC351187.1_Squaliobarbus_curricu .T..G..C..GT................T..A.....C.....C..C.......................A.....T..T KT278765.1_Pimephales_promelas_m .T.........T.......G..A..C..T.....G...........A..............G.....T..A..G..T..T KT289925.1_Pimephales_promelas_m .T.................G..A..C..T.................A..............G.....T..A..G.....T KT424924.1_Rhinichthys_osculus_m .T....................C.....T..A..C..CG.......C.....G..............T..C.....T... KU200257.1_Chanodichthys_ilishae .T....................C..C.....A..G..C.....C...........C..............A......... MF972070.1_Siphateles_bicolor_mo .T.....C...........G..A.....T..A.....C........C........C.....G........A......... MG570407.1_Notropis_chalybaeus_v .T..C..C..T...........A........A.....C.....C..C..............A..G..T..A.....T... MG570408.1_Notropis_bifrenatus_v .T........T..T.....G..A.....T.....T...........A..............G.....T..A.....T... MG570413.1_Notropis_heterolepis_ .T..G.....T...........A.....T..A..G..C........G........C.....G........A.....T... MG570416.1_Rhinichthys_obtusus_v ........T..T..........C..C..T..A.....C........C..G..G..............T..A.....T... MG570417.1_Rhinichthys_obtusus_v ........T..T..........C..C..T..A.....C........C..G..G..............T..A.....T... MG570420.1_Pimephales_notatus_vo .T.....C..C...........A..C.....A..G.....T.....G..............G.....T..A......... MG570443.1_Notropis_hudsonius_is .T..C.....T...........A..A..T..A..C..C........C..............G.....T..A......... MG570444.1_Rhinichthys_atratulus .T....................C..C..T.....C..C........C..G..G..............T..A.....T... MG570445.1_Rhinichthys_atratulus .T....................C..C..T.....C..C........C..G..G..............T..A.....T... MG570447.1_Luxilus_cornutus_isol .T..G..C..C...........A........A.....C........G..............G........A.....T... MG570449.1_Luxilus_cornutus_isol .T..G..C..C...........A........A.....C........G..............G........A.....T... MG570450.1_Pimephales_notatus_is .T.....C..C...........A..C.....A..G.....T.....G..............G.....T..A......... MG570451.1_Notropis_bifrenatus_i .T........T..T.....G..A.....T..A..T...........A..............G.....T..A.....T... MG570453.1_Exoglossum_maxillingu .T.........T..........C.....T..A..C..CG.......C...........G.....A..T........T... MG570454.1_Pimephales_promelas_i .T.................G..A..C..T.................A..............G.....T.....G..T..T MG570455.1_Notropis_atherinoides .T........C...........A.....T.................G..G...........A..G..T..A.....T... MG570456.1_Notropis_atherinoides .T........C...........A.....T.....G...........G..............G..G..T..A.....T... MG570457.1_Pimephales_notatus_is .T.....C..C...........A..C.....A..G.....T.....G..............G.....T..A......... MG570458.1_Pimephales_notatus_is .T.....C..C...........A..C.....A..G.....T.....G..............G.....T..A......... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .T..G.....C...........A..C..T..A.....C........C..............G.....T..A.....T... MT364325.1_Hybognathus_amarus_mi .T........T...........A.....T..A..T...........A........C.....G.....T..A......... MT501368.1_Gila_cypha_isolate_SN .T.....CT.GT..........G..A.....A..G..C...........G.....C.....G.................. MT501369.1_Notropis_simus_pecose .T..C..C..C...........G..C........G........C..A..............G.....T..A.....T..T MT501378.1_Hybognathus_amarus_is .T........T...........A.....T..A..T...........A........C.....G.....T..A......... MT501385.1_Notropis_jemezanus_vo .T..G.....T..G..G..G..A...........T...........A..............A..G..T..A.....T... MT501391.1_Rhinichthys_osculus_i .T.....C..............C.....T........CG.......C..G..G..............T..A.....T... MT667239.1_Rhinichthys_osculus_t .T.....C..............C.....T........CG.......C..G..G..............T..A.....T... MT667242.1_Luxilus_cornutus_vouc .T..G..C..C...........A........A.....C........G..............G........A.....T... MW300340.1_Hybognathus_placitus_ .T..C..C..C...........G........A..G..C........G..G.....C.....G..............T... MW300341.1_Hybognathus_placitus_ .T..C..C..C...........G........A..G..C........G..G.....C.....G.....T........T... NC_013763.1_Mylocheilus_caurinus .T......T......................A..T..C........C.....G..C..............A......... NC_033926.1_Opsopoeodus_emiliae_ .T........C..G........A..C.....A..............C..............A.....T..A.....T... NC_037008.1_Notropis_chalybaeus_ .T..C..C..T...........A........A.....C.....C..C..............A..G..T..A.....T... NC_037009.1_Notropis_heterolepis .T..G.....T...........A.....T..A..G..C........G........C.....G........A.....T... NC_037010.1_Rhinichthys_obtusus_ ........T..T..........C..C..T..A.....C........C..G..G..............T..A.....T... NC_037014.1_Notropis_hudsonius_i .T..C.....T...........A..A..T..A..C..C........C..............G.....T..A......... NC_037015.1_Exoglossum_maxilling .T.........T..........C.....T..A..C..CG.......C...........G.....A..T........T... NC_054086.1_Ptychocheilus_lucius .T.....CT..T..........A.....T..A.....C.................C.....G........A......... NC_054257.1_Gila_cypha_isolate_S .T.....CT.GT..........G..A.....A..G..C...........G.....C.....G.................. NC_054259.1_Gila_nigrescens_isol .T.....CT..T..........A........A..G..C.................C.....G.................. NC_054260.1_Hybognathus_amarus_i .T........T...........A.....T..A..T...........A........C.....G.....T..A......... NC_054262.1_Notropis_jemezanus_v .T..G.....T..G..G..G..A...........T...........A..G...........G..G..T..A.....T... Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 .T.....C..C...........A........A...........C..A........C.....A.....T..A..T...... Pimephales_tenellus_parvice_R2S2 .T........C...........A..C.....A..G..C........A..............A.....T..A..T...... Pimephales_notatus_R1S1_________ .T.....C..C...........A..C.....A.....C..T.....G..............A.....T..A.....T... MG570452.1_Pimephales_promelas_i .T.................G..A..C..T.................A..............G.....T.....G..T..T MG570452.1_Pimephales_promelas_S .T.................G..A..A..T.....G...........A..............G.....T..A..G..T..T AB626850.1_Megalobrama_terminali GCAACACTAACACGGTTCTTCGCATTCCACTTCCTACTACCATTCGTCGTCGCCGCCGCAACCCTTCTACACCTACTCTT AP010779.1_Mylocheilus_caurinus_ ..............A........C............T.T........TA......G.......G.C...........G.. AP011215.1_Gila_sp._1460_mitocho .....G..G.....A........C..............G..T..T..TA......G...G...A.C..C...T....G.. AP011263.1_Scardinius_erythropht ..G..C........A....................C..G..............A.G.......A.C..G...T.G..G.. AP011267.1_Algansea_lacustris_mi ..G...T.G.....A........C............T.C..G..T...A.T....GT.....TA....C...T..T.A.. AP011268.1_Yuriria_alta_mitochon ......T....G..A........T...........GT.C........TA......GT......G.C..T...T....A.. AP011273.1_Hybognathus_nuchalis_ .....GT....G..A........C............T.T........TA......GT.....TG.C..C.....T..A.. AP011274.1_Couesius_plumbeus_mit .....C.....G.......................C........T..........G.......A.C.....TT.GT.G.. AP011275.1_Platygobio_gracilis_m ......T....G..A........C..T........CT.C.........A....A.G.......A....G...T....A.. AP011277.1_Erimystax_dissimilis_ .....G........A........T...........GT.T..G.....TA......GT......A.............A.. AP011279.1_Pimephales_promelas_m ..............A........C............T.C.....T..AA......GT.....TG.C..C...T..T.A.. AP011280.1_Clinostomus_elongatus ...........G...........C...........CT.C.....T...A......GT......A................ AP012079.1_Luxilus_chrysocephalu ......T.G.....A........C............T.C.....T...A......G.......G....C...T....A.. AP012080.1_Macrhybopsis_gelida_m ......T.......A.....T..C............T.C.....T...A......G.......A........T....A.. AP012083.1_Notropis_atherinoides ......T.......A........C............T.C.....T...A....G.GT..C...G....T...T....G.. AP012084.1_Notropis_baileyi_mito ..............A........C............T.C..G.....TA......GG..G..TG....C...T..T.A.. AP012087.1_Cyprinella_galactura_ ..G.................T..C.....T......T.T.....T...A....A.G.......G.C..C..TT.G..A.. AP012088.1_Hybopsis_lineapunctat ......T.......A....................GT.T.........A......GT......G....C...T....A.. AP012090.1_Luxilus_cornutus_mito ......T.......A........C............T.C.........A....T.GT..G..TG....C...T.G..G.. AP012091.1_Lythrurus_ardens_mito ........G..C..A........C............T.C..G......A......GT..G...G....C...T....A.. AP012092.1_Lythrurus_fumeus_mito ...........C...........C.........T..T.C..G......A....T.GT......G.C..C...T....A.. AP012093.1_Lythrurus_lirus_mitoc ........G..C..A........C...........GT.C..G......A......GT..G...G....C...T....A.. AP012094.1_Lythrurus_umbratilis_ ........G..C..A........C............T.C..G......A......GT..G...G....C...T....A.. AP012095.1_Macrhybopsis_meeki_mi ......T.......A........C..T.........T.C..T......A......G......TA..........G..A.. AP012097.1_Notropis_bifrenatus_m ..............A........C............T.C..C..T...A....A.GT..T...G.C..C...T.G..A.. AP012098.1_Pimephales_sp._MCZunc ......T................C............T.C..G.....AA......GT.....TA....C...T....A.. AP012100.1_Notropis_telescopus_m ......T.......A....................GT.C..G..T...A....T.GT.....TG....C...T....G.. AP012101.1_Pimephales_notatus_mi ......T..............T.C..T.........T.C..G.....AA......GT.....TG....C...T....A.. AP012102.1_Pimephales_vigilax_mi ......T.G.....A........C...........CT.C........AA......G......TA....C...T..T.A.. AP012103.1_Pogonichthys_macrolep ..............A........C............T.C..C.....TA......G.......G.C......T....A.. AP012106.1_Richardsonius_balteat ..G..G........A........C...........CT.T.....T...A......GT......G.C........G..A.. AP012108.1_Notropis_chrosomus_mi ......T.G.....A........C...........GT.T.........A......GT.....TG.C..C...T....A.. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ......T.G.....A........C...........CT.C........AA......G......TA....C...T..T.A.. Pimephales_vigilax_R1S3_________ ......T.G.....A........C...........CT.C........AA......G......TA....C...T..T.A.. DQ536429.1_Notropis_stramineus_m ..G...T.G..G...........C.....T.....CT.C.........A.T....GT.....TG.C..C...T.G..... JX910141.1_Squaliobarbus_curricu ...................................C........T......A...........A....G.....T..... KC351187.1_Squaliobarbus_curricu ...................................C........T......A...........A....G.....T..... KT278765.1_Pimephales_promelas_m ..............A........C............T.C.....T..AA......GT.....TG.C..C...T..T.A.. KT289925.1_Pimephales_promelas_m ..............A........C............T.C..G.....AA......GT.....TG.C..C...T..T.A.. KT424924.1_Rhinichthys_osculus_m .....GT.......A........C.........T..T.T..G.....TA......GT.....AA....G..TT.G..A.. KU200257.1_Chanodichthys_ilishae ..G............A....................T........A.............G...A.C...........T.. MF972070.1_Siphateles_bicolor_mo .....T........A........C...........C..G..T..T..TA......G.......A.C......T..T.A.. MG570407.1_Notropis_chalybaeus_v ..............A........C............T.C.....T...A......GA.....TG.C..T...T..T.A.. MG570408.1_Notropis_bifrenatus_v ..............A........C............T.C..C..T...A....A.GT..T...G.C..C...T.G..A.. MG570413.1_Notropis_heterolepis_ ..............A.....T..C............T.C.....T..GA.T....GT......A....C...T....A.. MG570416.1_Rhinichthys_obtusus_v .....GT.G.....A........C..T......T..T.C..G.....TA......GT.....AG.C..G..TT....A.. MG570417.1_Rhinichthys_obtusus_v .....GT.G.....A........C..T......T..T.C..G.....TA......GT.....AG.C..G...T....A.. MG570420.1_Pimephales_notatus_vo ......T................C............T.T..G.....AA......GT.....TA....C...T....A.. MG570443.1_Notropis_hudsonius_is ..C.....G.....A..T.....C...........GT.T..C......A.T....GT......G....C...T....A.. MG570444.1_Rhinichthys_atratulus .....GT.......A........C..T......T..T.C........TA......GT..G...G.C..C..TT....A.. MG570445.1_Rhinichthys_atratulus .....GT.......A........C..T......T..T.C........TA......GT..G...G.C..C..TT....A.. MG570447.1_Luxilus_cornutus_isol ......T.......A........C............T.C.........A......GT.....TG....C...T.G..A.. MG570449.1_Luxilus_cornutus_isol ......T.......A........C............T.C.........A......GT.....TG....C...T.G..A.. MG570450.1_Pimephales_notatus_is ......T................C............T.T..G.....AA......GT.....TA....C...T....A.. MG570451.1_Notropis_bifrenatus_i ..............A........C............T.C..C..T...A....A.GT..T...G.C..C...T.G..A.. MG570453.1_Exoglossum_maxillingu .....G........A........T...........GT.T..G.....TA......GT......A.............A.. MG570454.1_Pimephales_promelas_i ..............A........C............T.C..G.....AA......GT.....TG.C..C...T..T.A.. MG570455.1_Notropis_atherinoides ......T.......A........C............T.C.....T...A....G.GT..C...G....T...T....G.. MG570456.1_Notropis_atherinoides ......T.......A........C............T.C.....T...A....G.GT..C...G....T...T....G.. MG570457.1_Pimephales_notatus_is ......T................C............T.C..G.....AA......GT.....TA....C...T....A.. MG570458.1_Pimephales_notatus_is ......T................C............T.C..G.....AA......GT.....TA....C...T....A.. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .....CT.......A........C...........GT.C.........A......GT.....TG....C...T....G.. MT364325.1_Hybognathus_amarus_mi ......T.G.....A........C...........GT.C.....T..TA......GT.....TG.C..C.....T..A.. MT501368.1_Gila_cypha_isolate_SN ........G..G..A........C...........C..G..T..T..TA......G.......A........T....A.. MT501369.1_Notropis_simus_pecose ........C..G...........C...........CT.C..C.....TA......GT.....TG.C..C........G.. MT501378.1_Hybognathus_amarus_is ......T.G.....A........C...........GT.C.....T..TA......GT.....TG.C..C.....T..A.. MT501385.1_Notropis_jemezanus_vo ......T....G..A........C...........CT.C.....T...A....G.GT..C...G....T..TT....G.. MT501391.1_Rhinichthys_osculus_i .....GT.......A..T.....C...........GT.T..G.....TA......GT..G..GG.C..G..TT.G..A.. MT667239.1_Rhinichthys_osculus_t .....GT.......A..T.....C...........GT.T..G.....TA......GT..G..GG.C..G..TT.G..A.. MT667242.1_Luxilus_cornutus_vouc ......T.......A........C............T.C.........A......GT.....TG....C...T.G..A.. MW300340.1_Hybognathus_placitus_ ......T.G.....A........C............T.C..C......A......G...C..TG....C........A.. MW300341.1_Hybognathus_placitus_ ......T.G.....A........C............T.C..C......A......G...C..TG....C........A.. NC_013763.1_Mylocheilus_caurinus ..............A........C............T.T........TA......G.......G.C...........G.. NC_033926.1_Opsopoeodus_emiliae_ ......T.......A........C..T.........T.C.....T..AA....G.G.A....TA.C..T...T....A.. NC_037008.1_Notropis_chalybaeus_ ..............A........C............T.C.....T...A......GA.....TG.C..T...T..T.A.. NC_037009.1_Notropis_heterolepis ..............A.....T..C............T.C.....T..GA.T....GT......A....C...T....A.. NC_037010.1_Rhinichthys_obtusus_ .....GT.G.....A........C..T......T..T.C..G.....TA......GT.....AG.C..G..TT....A.. NC_037014.1_Notropis_hudsonius_i ..C.....G.....A..T.....C...........GT.T..C......A.T....GT......G....C...T....A.. NC_037015.1_Exoglossum_maxilling .....G........A........T...........GT.T..G.....TA......GT......A.............A.. NC_054086.1_Ptychocheilus_lucius ..............A........C...........C..G..T..TA.TA......GT......A.C......T....A.. NC_054257.1_Gila_cypha_isolate_S ........G..G..A........C...........C..G..T..T..TA......G.......A........T....A.. NC_054259.1_Gila_nigrescens_isol ........G.....A........C...........C..G..T..T..TA......G...G...A.C..G...T....G.. NC_054260.1_Hybognathus_amarus_i ......T.G.....A........C...........GT.C.....T..TA......GT.....TG.C..C.....T..A.. NC_054262.1_Notropis_jemezanus_v ......T....G..A........C...........CT.C.....T...A....G.GT..C...G....T..TT....G.. Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 ......T.G..G..A........C............T.T.....T..GA.T..T.GT.....TG.C..C...T..T.A.. Pimephales_tenellus_parvice_R2S2 ......T.G..G..A........C............T.T.....T..GA.T..T.GT.....TG.C..C...T..T.A.. Pimephales_notatus_R1S1_________ ......T.......A........C............T.C..G.....AA......G.......G....C...T....G.. MG570452.1_Pimephales_promelas_i ..............A........C............T.C..G.....AA......GT.....TG.C..C...T..T.A.. MG570452.1_Pimephales_promelas_S ..............A........C............T.C.....T..AA......GT.....TG.C..C...T..T.A.. AB626850.1_Megalobrama_terminali TCTCCACGAAACAGGATCGAATAATCCAGCCGGATTAAACTCCGACGCAGATAAAATTTCCTTCCACCCATATTTCTCAT AP010779.1_Mylocheilus_caurinus_ .T.A..............A..C..C..T..............T........C........T........T..C....... AP011215.1_Gila_sp._1460_mitocho ...A........C.....A..C..C..G......C.......T..T..G........C..............C..T.... AP011263.1_Scardinius_erythropht ...A.................C..C..G......C....T........G..C.................G..C.....G. AP011267.1_Algansea_lacustris_mi ...A..T...........A..C..C..T........G.....G.....G..C..G..C.....T..T..G.......... AP011268.1_Yuriria_alta_mitochon CT.A..............A..C..C..C......C.....................................C.....C. AP011273.1_Hybognathus_nuchalis_ CT.A...........G..A.....C..C.....GC.............C..C.....C...........C.......... AP011274.1_Couesius_plumbeus_mit .T.A........G.....A..C..C.........C.......T.....G...........T...........C....... AP011275.1_Platygobio_gracilis_m CT.A...........G..A.....C..C.....G.....T.....T..G........C..T...........C.....C. AP011277.1_Erimystax_dissimilis_ CT.A........G.....A.....C..T.....GC...................G..C..T........G..C....... AP011279.1_Pimephales_promelas_m C..A...........G..A..C..C..T.....GC................C.....C..T........C..C.....T. AP011280.1_Clinostomus_elongatus CT.A.................C..C..C......C....T..T.....G...........T...........C....... AP012079.1_Luxilus_chrysocephalu .T.G...........G..A..C..C..T.....CC.............G........C...........C..C.....T. AP012080.1_Macrhybopsis_gelida_m .T.A..............A..C..C..C..T..........................C.....T.....T..C....... AP012083.1_Notropis_atherinoides CT.G.....G.....G.....C..C........GC.G...........G..C.....C...........C..C.....C. AP012084.1_Notropis_baileyi_mito C........G..G..T..T..C..C..T......C.............G..C.....C...........C..C.....C. AP012087.1_Cyprinella_galactura_ C..A........T..C..A..C..C..C.....GC.C...........G........C...........C..C....... AP012088.1_Hybopsis_lineapunctat ...A...........G..A..C..C..T......C......................C........T..C..C.....C. AP012090.1_Luxilus_cornutus_mito .T.A.....G........A..C..C..T.....C..............G.....G..C...........C..C.....C. AP012091.1_Lythrurus_ardens_mito CT.A..T..G.....G..A..C..........................T..C.....C...........C..C.....C. AP012092.1_Lythrurus_fumeus_mito ...T..T........G..A..C..C..C......C.......T..T..G..C..G..C.....T.....C..C.....C. AP012093.1_Lythrurus_lirus_mitoc C..A..T.....G..G..A..C............C.............T..C.....C...........C..C.....C. AP012094.1_Lythrurus_umbratilis_ CT.A..T..G.....G..A..C............C.............T..C.....C...........C..C.....C. AP012095.1_Macrhybopsis_meeki_mi CT.A..T..G........A..C..C..T..T..........................C...........T..C..T.... AP012097.1_Notropis_bifrenatus_m C..A..............A..C..C..T........G.....T..............C...........T..C..T..C. AP012098.1_Pimephales_sp._MCZunc ...A...........G..A..C.....T......C.T...........G..C.....C...........C..C.....C. AP012100.1_Notropis_telescopus_m .T.G...........G.....C..C..C.....G..G..............C.....C..T........C..C.....C. AP012101.1_Pimephales_notatus_mi ...A...........G..A..C.....T......C.T...........G..C.....C...........C..C.....C. AP012102.1_Pimephales_vigilax_mi CT.A..............A........T...........T........G..C.....C.....T..T..C..C.....C. AP012103.1_Pogonichthys_macrolep ...A........G.....A..C..C..C......C.G..............C........T..T........C.....G. AP012106.1_Richardsonius_balteat .T.A........G..G..A.....C..C......C.G.....T.....G....................G.......... AP012108.1_Notropis_chrosomus_mi ...A...........G..A..C..C..T..T..CC.............G..C.....C..T........C..C.....C. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ CT.A..............A........T...........T........G..C.....C.....T..T..C..C.....C. Pimephales_vigilax_R1S3_________ CT.A..............A........T...........T........G..C.....C.....T..T..C..C.....C. DQ536429.1_Notropis_stramineus_m CT.A........G..G..A..C..C..T.....GC..................................C..C.....T. JX910141.1_Squaliobarbus_curricu C..A.................C..C.........C......................C..............C....... KC351187.1_Squaliobarbus_curricu C..A.................C..C.........C......................C..............C....... KT278765.1_Pimephales_promelas_m C..A...........G..A..C..C..C.....GC................C.....C..T........C..C.....T. KT289925.1_Pimephales_promelas_m C..A...........G..A..C..C..T.....GC................C.....C..T........C..C.....T. KT424924.1_Rhinichthys_osculus_m ...A........G.....A..C..C..T....................G........C..T...........C....... KU200257.1_Chanodichthys_ilishae C..............C.....C..C........GC................C.....C..............C....... MF972070.1_Siphateles_bicolor_mo .T.A........T..G.....C..C..G......C.......T..T..G.......................C..T.... MG570407.1_Notropis_chalybaeus_v C........G.....C..T..C.....T.....GC.............G........C...........C..C..T..C. MG570408.1_Notropis_bifrenatus_v C..A..............A..C..C..T........G.....T..............C...........T..C..T..C. MG570413.1_Notropis_heterolepis_ .T.A...........C.....C..C..T.....GC......................C...........C..C.....C. MG570416.1_Rhinichthys_obtusus_v ...T........C.....A.....C..T.....GC.............G........C..T...........C....... MG570417.1_Rhinichthys_obtusus_v ...T........C.....A.....C..T.....GC.............G........C..T...........C....... MG570420.1_Pimephales_notatus_vo ...A...........G..A..C.....T......C.T...........G..C.....C...........C..C.....C. MG570443.1_Notropis_hudsonius_is ...T.....G..T..C..A.....C..C.....C..............G.....G..C..T...........C.....C. MG570444.1_Rhinichthys_atratulus ...T.....G..C...........C..T.....G.......................C..T...........C....... MG570445.1_Rhinichthys_atratulus ...T.....G..C...........C..T.....G.......................C..T...........C..T.... MG570447.1_Luxilus_cornutus_isol .T.A.....G..G..G..A..C..C..T.....C..............G.....G..C...........C..C.....C. MG570449.1_Luxilus_cornutus_isol .T.A.....G..G..G..A..C..C..T.....C..............G.....G..C...........C..C.....C. MG570450.1_Pimephales_notatus_is ...A...........G..A..C.....T......C.T...........G..C.....C...........C..C.....C. MG570451.1_Notropis_bifrenatus_i C..A..............A..C..C..T........G.....T..............C...........T..C..T..C. MG570453.1_Exoglossum_maxillingu CT.A........G.....A.....C..T.....GC...................G..C..T........G..C....... MG570454.1_Pimephales_promelas_i C..A...........G..A..C..C..T.....GC................C.....C..T........C........T. MG570455.1_Notropis_atherinoides CT.G.....G.....G.....C..C........GC.G...........G..C.....C...........C..C.....C. MG570456.1_Notropis_atherinoides CT.G.....G.....G.....C..C........GC.G...........G..C.....C...........C..C.....C. MG570457.1_Pimephales_notatus_is ...A...........G..A..C.....T......C.T...........G..C.....C...........C..C.....C. MG570458.1_Pimephales_notatus_is ...A...........G..A..C.....T......C.T...........G..C.....C...........C..C.....C. MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v C..G...........G..A.....C..T..T..GC................C.....C..T........C........T. MT364325.1_Hybognathus_amarus_mi .T.A........G.....A..C..C..C.....GC.............G..C.....C...........C.......... MT501368.1_Gila_cypha_isolate_SN ...A........C..G..A..C..C..G......C.......T..T..G.......................C..T.... MT501369.1_Notropis_simus_pecose ...A.....G..G..G..A..C..C..T..T..G..G.....A........C.....C...........C..C....... MT501378.1_Hybognathus_amarus_is .T.A........G.....A..C..C..C.....GC.............G..C.....C...........C.......... MT501385.1_Notropis_jemezanus_vo CT.G.....G........A..C..C..G.....GC.G..............C.....C...........C..C.....C. MT501391.1_Rhinichthys_osculus_i .T.A........G.....A..C..C..T....................G........C..T...........C.....G. MT667239.1_Rhinichthys_osculus_t .T.A........G.....A..C..C..T....................G........C..T...........C.....G. MT667242.1_Luxilus_cornutus_vouc .T.A.....G..G..G..A..C..C..T.....C..............G.....G..C...........C..C.....C. MW300340.1_Hybognathus_placitus_ C..A...........G..A..C..C..C......C......................C...........C........C. MW300341.1_Hybognathus_placitus_ C..A...........G..A..C..C..C......C......................C...........C........C. NC_013763.1_Mylocheilus_caurinus .T.A..............A..C..C..T..............T........C........T........T..C....... NC_033926.1_Opsopoeodus_emiliae_ .T.A......G.C.....A.....C..CA.....C.T..T..TA.......C.....C........T..C..C.....C. NC_037008.1_Notropis_chalybaeus_ C........G.....C..T..C.....T.....GC.............G........C...........C..C..T..C. NC_037009.1_Notropis_heterolepis .T.A...........C.....C..C..T.....GC......................C...........C..C.....C. NC_037010.1_Rhinichthys_obtusus_ ...T........C.....A.....C..T.....GC.............G........C..T...........C....... NC_037014.1_Notropis_hudsonius_i ...T.....G..T..C..A.....C..C.....C..............G.....G..C..T...........C.....C. NC_037015.1_Exoglossum_maxilling CT.A........G.....A.....C..T.....GC...................G..C..T........G..C....... NC_054086.1_Ptychocheilus_lucius ...A.....G..C..G..A..C..C..G......C.......T..T..G.......................C....... NC_054257.1_Gila_cypha_isolate_S ...A........C..G..A..C..C..G......C.......T..T..G.......................C..T.... NC_054259.1_Gila_nigrescens_isol ...A........C..C..A..C..C..G.....GC.......T..T..G........C...........C..C....... NC_054260.1_Hybognathus_amarus_i .T.A........G.....A..C..C..C.....GC.............G..C.....C...........C.......... NC_054262.1_Notropis_jemezanus_v CT.G.....G........A..C..C..G.....GC.G..............C.....C...........C..C.....C. Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 C..A..T..G.....G.....C..C..C.....GC...............................T..C..C.....C. Pimephales_tenellus_parvice_R2S2 C..A..T..G.....G.....C.....C.....GC...............................T..C..C.....C. Pimephales_notatus_R1S1_________ CT.A..............A........T......C.............G..C..G..............C..C.....C. MG570452.1_Pimephales_promelas_i C..A...........G..A..C..C..T.....GC................C.....C..T........C..C.....T. MG570452.1_Pimephales_promelas_S C..A...........G..A..C..C..T.....GC................C.....C..T........C..C.....T. AB626850.1_Megalobrama_terminali ATAAAGACCTTCTAGGGTTCGTAGTGATATTGTTAGCCCTCACATCATTAGCACTATTCTCCCCAAACCTCTTAGGAGAC AP010779.1_Mylocheilus_caurinus_ .C........C..T..C......T.A...C.......A.........C.GA..T.G..........C....C.C..C... AP011215.1_Gila_sp._1460_mitocho .C...........T..C.....GC.A...C.A..............T......T....T..T..T.....A.....T..T AP011263.1_Scardinius_erythropht .C..G........T..C......A.T...C..C.T.....T...G.T..G....................T.....G... AP011267.1_Algansea_lacustris_mi .............T..C.....TC.A..GC..........G......C.GA..T....T.......C...AC.C..C... AP011268.1_Yuriria_alta_mitochon .............T..C..T..CC.A..GC.AC....G........CC..A.CT....T.......C...AC.C..T... AP011273.1_Hybognathus_nuchalis_ .C..G........T..C..T..CC.A...C.AC....T..G.....C...A.GT..........T.CAT.AC.C..C... AP011274.1_Couesius_plumbeus_mit .......T.....C..C.....C..A...C.AC....T..............C.....T........T..AC.G..C... AP011275.1_Platygobio_gracilis_m .C........C..T..C......C.T...C.......T.....G..C...A..T....T.......CT..GC.T..C... AP011277.1_Erimystax_dissimilis_ .C.....T..C..T..C......C.A...C.A........T...G.CC..A.C.............C...GC.C..C... AP011279.1_Pimephales_promelas_m .C.....T..C..C..C..T..TT....G...C.......A.....CC.CA.C......G....C.CT..TC.C..C..T AP011280.1_Clinostomus_elongatus .............T..C..T...T.A...C.A.....T..T.........A.TT....T..T....CT...C.C..C... AP012079.1_Luxilus_chrysocephalu ..........C..T..C.....CC....GC.A.....T...G....CC..A..T....T.....G.C...AC.C..C... AP012080.1_Macrhybopsis_gelida_m ..........C..T..C..T...T.A...C.TC.......T.....T...A..T..........C.CT..AC.T..T... AP012083.1_Notropis_atherinoides .C...........T..C.....CC.A...C.......T..T.....CC..A.CT..........C.CT..GC.C..C... AP012084.1_Notropis_baileyi_mito .......T.....T..C.....CC.A..GC.A.....T..T.....CC.CA.GT..........C.C...GC.T..C... AP012087.1_Cyprinella_galactura_ .C...........T..C.....CC.A...C..C.T..T........CC.GA.CT.G.....T..C.C.T.GC....T... AP012088.1_Hybopsis_lineapunctat ....G.....C..C..C..T..CC.A.....AC....T..G.....GC.GA.............C.C...AC.T..T... AP012090.1_Luxilus_cornutus_mito .............T..C.....CC.A..GC.A.....T........CC..A..T....T.....T.C...AC.C..C... AP012091.1_Lythrurus_ardens_mito .C...........T..C..T..CC.A..GC.......T..T.....CC.CA..T.G........T.C...GC.C..C... AP012092.1_Lythrurus_fumeus_mito .............T..T.....CC.A..G.....G........C..C...A.GT.G........C.C.T.AC.C..T... AP012093.1_Lythrurus_lirus_mitoc .C.....T.....T..C..T..GC.A..GC.......T..T.....CC..A.GT.G..........C...AC.T..T... AP012094.1_Lythrurus_umbratilis_ .C...........T..C..T..CC.A..GC.......T..T.....CC.CA..T.G........T.C...GC.C..C... AP012095.1_Macrhybopsis_meeki_mi ..........C..T..C..T...C.....C.TC.......T.....T...A..T..........C.CT..TC.T..T... AP012097.1_Notropis_bifrenatus_m .C...........T..T..T..CC.A...C.T.....A..T.....CC.GA.GT....T.....T.C...AC.T..C..T AP012098.1_Pimephales_sp._MCZunc ..........C..T..T......C........C....T..T.....C...A..T.......T..C.C...GC.T..C... AP012100.1_Notropis_telescopus_m .............T..C..T..CC.A..GC.A.....T..T.....CC.CA.CT.G.....A....CT..AC.C..T... AP012101.1_Pimephales_notatus_mi ..........C..T..T..T...C........C....T..T.....C...A..T.......T..C.C...GC.T..C... AP012102.1_Pimephales_vigilax_mi .C..............T..T..CC.A..GC..C..A.T..T....T.C.GA..T....T.....C.C...GC.T..C... AP012103.1_Pogonichthys_macrolep .C........C..T..C......T.A...C..C....A.........C.GA..T.G..T.......C....C.C..C... AP012106.1_Richardsonius_balteat .C...........T..C..T...T.A...C.A..G..T..T......C..A.T.......T.....C....C.T..T... AP012108.1_Notropis_chrosomus_mi .C........C..T..C..T..CC.C...C.AC.......TG....CC.CA.GT..........C.C...GC.C..C... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ .C..............T..T..CC.A..GC..C..A.T..T....T.C.GA..T....T.....C.C...GC.T..C... Pimephales_vigilax_R1S3_________ .C..............T..T..CC.A..GC..C..A.T..T....T.C.GA..T....T.....C.C...GC.T..C... DQ536429.1_Notropis_stramineus_m .C..G........T..T.....TC....GC.TC....T........CC.GA.GT..........T.CG..AC.C..T..T JX910141.1_Squaliobarbus_curricu .C..............C..T.....A...C.A........A.....C......T................AC....G... KC351187.1_Squaliobarbus_curricu .C..............C..T.....A...C.A........A.....C......T.G..............AC....G... KT278765.1_Pimephales_promelas_m .......T..C..C..C..T..CC.....C..C....T..A.....CC.CA.C......G....C.CT..TC.T..C... KT289925.1_Pimephales_promelas_m .C.....T..C..C..C..T..TC....GC..C.......A.....CC.CA.C......G....C.CT..TC.T..C... KT424924.1_Rhinichthys_osculus_m .C..G.....C.....C..T..GC.A.....A..............CC..A..T.......A....CA..GC.C..C... KU200257.1_Chanodichthys_ilishae ................A..T...........A.............................T.....T...C.G...... MF972070.1_Siphateles_bicolor_mo .C........C..T..C......C.A.....A.....................T....T.....C.....A.....T... MG570407.1_Notropis_chalybaeus_v .......T.....T..C......C.A..GC.......T..T.....CC.CA.CT.G.....A..T.C...GC.C..C... MG570408.1_Notropis_bifrenatus_v .C...........T..T..T..CC.A...C.T.....A..T.....CC.GA.GT....T.....T.C...AC.T..C..T MG570413.1_Notropis_heterolepis_ .............T..C.....CT.A...C.A........T.....CC..A.............T.C...AC.T..C... MG570416.1_Rhinichthys_obtusus_v ....G.....C..T..C..T...C.....C.TC....T........CC..A.GT..........C.C...TC....C... MG570417.1_Rhinichthys_obtusus_v ....G.....C..T..C..T...C.....C.TC....T........CC..A.GT..........C.C...TC....C... MG570420.1_Pimephales_notatus_vo ..........C..T..T......C........C....T..T.....C...A..T.......T..C.C...GC.T..C... MG570443.1_Notropis_hudsonius_is .............T..C.....CT.A...C..C....G...G....CC..A.GT..........T.CT...C.C...... MG570444.1_Rhinichthys_atratulus ..........C..C..C..T...C.A...C.A..G..T........CC..A..T.G........C.C...TC.G..T... MG570445.1_Rhinichthys_atratulus ..........C..C..C..T...C.A...C.A..G..T........CC..A..T.G........C.C...TC.G..T... MG570447.1_Luxilus_cornutus_isol .............T..C.....CC.A..GC.A.....T........CC..A..T....T.....T.C...AC.C..C... MG570449.1_Luxilus_cornutus_isol .............T..C.....CC.A..GC.A.....T........CC..A..T....T.....T.C...AC.C..C... MG570450.1_Pimephales_notatus_is ..........C..T..T......C........C....T..T.....C...A..T.......T..C.C...GC.T..C... MG570451.1_Notropis_bifrenatus_i .C...........T..T..T..CC.A...C.T.....A..T.....CC.GA.GT....T.....T.C...AC.T..C..T MG570453.1_Exoglossum_maxillingu .C.....T..C..T..C......C.A...C.A........T...G.CC..A.C.............C...GC.C..C... MG570454.1_Pimephales_promelas_i .C.....T..C..C..C..T..TC....GC..C.......A.....CC.CA.C......G....C.GT..TC.T..C... MG570455.1_Notropis_atherinoides .C...........T..C.....CC.A...C.A.....T..T.....CC..A.CT..........C.CT..GC.C..C... MG570456.1_Notropis_atherinoides .C...........T..C.....CC.A...C.A.....T..T.....CC..A.CT....T.....C.CT..GC.C..C... MG570457.1_Pimephales_notatus_is ..........C..T..T......C.......AC....T..T.....C...A..T.......T..C.C...GC.T..C... MG570458.1_Pimephales_notatus_is ..........C..T..T......C........C....T..T.....C...A..T.......T..C.C...GC.T..C... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .......T..C..C..C.....CT....G..A.....T..T.....CC.TA.C...........C.C...GC.T..T... MT364325.1_Hybognathus_amarus_mi .C..G........C..C.....CC.A...C..C.............C..GA.GT..........C.CTT.AC.C..C... MT501368.1_Gila_cypha_isolate_SN .C...........T..C.....GC.A...C.A..............T...........T.....C.....A.....T... MT501369.1_Notropis_simus_pecose .C.....T..C..T..C..T..CC.A...C.AC....T..AG....CC.CA.GT..........C.C...GC.C..C... MT501378.1_Hybognathus_amarus_is .C..G........C..C.....CC.A..GC..C.......A.....C..GA.GT..........C.CTT.AC.C..C... MT501385.1_Notropis_jemezanus_vo .C...........T..C.....CC....GC.A.....T........CC.GA.CT.G........C.C...GC.C..C... MT501391.1_Rhinichthys_osculus_i .C.....T..C..T..C..T...C.A..G..A.....T........CC.GA..T............CT..GC.C..C... MT667239.1_Rhinichthys_osculus_t .C.....T..C..T..C..T...C.A..G..A.....T........CC.GA..T............CT..GC.C..C... MT667242.1_Luxilus_cornutus_vouc .............T..C.....CC.A..GC.A.....T........CC..A..T....T.....T.C...AC.C..C... MW300340.1_Hybognathus_placitus_ .C..G........T..C.....CC....G..A.....T........C..GA..T..........C.CT..GC.C..C... MW300341.1_Hybognathus_placitus_ .C..G........T..C.....CC.A..G..A.....T........C..GA..T..........C.CT..GC.C..C... NC_013763.1_Mylocheilus_caurinus .C........C..T..C......T.A...C.......A.........C.GA..T.G..........C....C.C..C... NC_033926.1_Opsopoeodus_emiliae_ .............C..C....CCT.A...C..C....G......A.CC..A....C........C.C...TC..C.C... NC_037008.1_Notropis_chalybaeus_ .......T.....T..C......C.A..GC.......T..T.....CC.CA.CT.G.....A..T.C...GC.C..C... NC_037009.1_Notropis_heterolepis .............T..C.....CT.A...C.A........T.....CC..A.............T.C...AC.T..C... NC_037010.1_Rhinichthys_obtusus_ ....G.....C..T..C..T...C.....C.TC....T........CC..A.GT..........C.C...TC....C... NC_037014.1_Notropis_hudsonius_i .............T..C.....CT.A...C..C....G...G....CC..A.GT..........T.CT...C.C...... NC_037015.1_Exoglossum_maxilling .C.....T..C..T..C......C.A...C.A........T...G.CC..A.C.............C...GC.C..C... NC_054086.1_Ptychocheilus_lucius .C...........T..C.....GC.A...C.A..............T......T....T..T..C.....G.....T... NC_054257.1_Gila_cypha_isolate_S .C...........T..C.....GC.A...C.A..............T...........T..T..C.....A.....T... NC_054259.1_Gila_nigrescens_isol .C..G........T..C.....GC.A...C.A........T.....T......T....T..T..C...........T... NC_054260.1_Hybognathus_amarus_i .C..G........C..C.....CC.A...C..C.............C..GA.GT..........C.CTT.AC.C..C... NC_054262.1_Notropis_jemezanus_v .C...........T..C.....CC....GC.A.....T........CC.GA.CT.G........C.C...GC.C..C... Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 .C...........C..C.....CC.A...C..C....A..T.....CC..A.GT.G.....A..C.C.T.AC.T..T... Pimephales_tenellus_parvice_R2S2 .C........C..C..C.....CC.A...C..C....A........CC..A.GT.G.....A..C.C.T.AC.T..T... Pimephales_notatus_R1S1_________ .C........C..T..C......C.A.....AC....T..T.....CC.GA.CT..........C.C...AC.T..C... MG570452.1_Pimephales_promelas_i .C.....T..C..C..C..T..TC....GC..C.......A.....CC.CA.C......G....C.GT..TC.T..C... MG570452.1_Pimephales_promelas_S .C.....T..C..C..C..T..TC....G...C.......A.....CC.CA.C......G....C.CT..TC.C..C... AB626850.1_Megalobrama_terminali CCAGAAAATTTCACCCCAGCAAATCCACTAGTCACTCCCCCACATATCAAGCCAGAATGATACTTCCTGTTTGCCTACGC AP010779.1_Mylocheilus_caurinus_ .....G.....T.....G.....C..G.....T...........C...C.A.....G.....T...T.A........... AP011215.1_Gila_sp._1460_mitocho T..........T.T...G..G..C..T.....................C....T........T..TT..........T.. AP011263.1_Scardinius_erythropht ..T..G.....T...........C.....C..G..A............C.......G.....T...T.A........T.. AP011267.1_Algansea_lacustris_mi .....G.................C.....G..T..C..A........TC.A...............T.A........T.. AP011268.1_Yuriria_alta_mitochon ..G..............G..............T.....A........TC.A..C..G.........T....C........ AP011273.1_Hybognathus_nuchalis_ ..G.......................G..G..T..C..A........TC....T............T.A........... AP011274.1_Couesius_plumbeus_mit .....C..C.....T...........C..G.....C..G.....C...C.A..G..G........TT.A........... AP011275.1_Platygobio_gracilis_m ..............T..C..G..C.....G..T..C..A.....C..TC.A.....G.........T............. AP011277.1_Erimystax_dissimilis_ .....G....................CT....T..C..A.....C..TC.A..C............T.A........... AP011279.1_Pimephales_promelas_m ........C..............C.....G..T.....G........TC.A..C..G.....T................. AP011280.1_Clinostomus_elongatus .....G.................C..G........C..G........TC.A.....G....................... AP012079.1_Luxilus_chrysocephalu .....G.................C........T..C..G.....C..TC.A..C..G.........T....C........ AP012080.1_Macrhybopsis_gelida_m ...........T.....C.....C..CT....A..C..A.....C..TC.A...............T.A..C.....T.. AP012083.1_Notropis_atherinoides ..G..G..C....................G..T..C..A........TC.A..C..G.........T....C........ AP012084.1_Notropis_baileyi_mito .............................G........G.....C...C.A..T..G.........T.A........... AP012087.1_Cyprinella_galactura_ ...........T.....T.........T....T..C..A.....C...CCA..C..G..G..T...T.A..C..T..T.. AP012088.1_Hybopsis_lineapunctat .....G..C.....T........C...T.G..T..C..A.....C..TC.A..C.................C........ AP012090.1_Luxilus_cornutus_mito ........C..............C.....G..T..C..A.....C..TC.A..C.....G......T....C.....T.. AP012091.1_Lythrurus_ardens_mito ........C.................G..G..T..C..A........TC.A..C..G....................T.. AP012092.1_Lythrurus_fumeus_mito ........C..............C..G..T..T..C..G.....C..TC....T.................C........ AP012093.1_Lythrurus_lirus_mitoc .....G..C..............C.....G..T..C..A.....C..TC.A..T..G...........A..C.....T.. AP012094.1_Lythrurus_umbratilis_ ........C.................G..G..T..C..A........TC.A..C..G.........T..........T.. AP012095.1_Macrhybopsis_meeki_mi .................C.....C..CT....A..C..A.....C...C.A...............T.A..C.....T.. AP012097.1_Notropis_bifrenatus_m ........C.....T.....G..C..C..G..T..G..A.....C...C.A..T..G.........T.A..C........ AP012098.1_Pimephales_sp._MCZunc ........C..............C..G..G..T..C..A........TC.A..T..G....................... AP012100.1_Notropis_telescopus_m ........C.....T........C..C..G..T..C..A.....C...C.A..C..G...........A........T.. AP012101.1_Pimephales_notatus_mi ........C..............C..G..G..T..C..A.....C..TC.A..T..G.....T................. AP012102.1_Pimephales_vigilax_mi ........C..............C.....G..T..C..A.....C...C.A..C..G.....T.....A........... AP012103.1_Pogonichthys_macrolep .......................C..GT....T.....G.....C...C............................... AP012106.1_Richardsonius_balteat .....G........G........C..G..G..T..C..A.........C.A.....G..G........T........... AP012108.1_Notropis_chrosomus_mi .................G.....C.....G.....C..A........TC.A..C..G.........T.A........... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ........C..............C.....G..T..C..A.....C...C.A..C..G.....T.....A........... Pimephales_vigilax_R1S3_________ ........C..............C.....G..T..C..A.....C...C.A..C..G.....T.....A........... DQ536429.1_Notropis_stramineus_m .....G..C..............C..C..G..T..C.....G.....TC....C.......................T.. JX910141.1_Squaliobarbus_curricu ........C...........C..C..G.....T..C..T.....C.....A.................A.....T..T.. KC351187.1_Squaliobarbus_curricu ........C...........C..C..G.....T..C..T.....C.....A.................A.....T..T.. KT278765.1_Pimephales_promelas_m ........C..............C..C.....T.....G.....C..TC.A..C..G.....T................. KT289925.1_Pimephales_promelas_m ........C..............C.....G..T.....G........TC.A..C..G.....T................. KT424924.1_Rhinichthys_osculus_m ...........T.....G.....C..C..G..T..C..A.....C...C.A..G..G..G......T............. KU200257.1_Chanodichthys_ilishae .....G...........T.....C...........C..T.............................A.....T..... MF972070.1_Siphateles_bicolor_mo T..........T.T...C.....C..C.....................C....C...........TT.A........T.. MG570407.1_Notropis_chalybaeus_v .................G.....C..G..G.....C..G.....C...C.A..G..G...........A........... MG570408.1_Notropis_bifrenatus_v ........C.....T.....G..C..C..G..T..G..A.....C...C.A..T..G.........T.A..C........ MG570413.1_Notropis_heterolepis_ ........C........G.....C..G..G..T..C..A........TC....C............T.A........... MG570416.1_Rhinichthys_obtusus_v .......................C..C.....T.....A.....C...C.A..G..G.........T............. MG570417.1_Rhinichthys_obtusus_v .......................C..C.....T.....A.....C...C.A..G..G.........T............. MG570420.1_Pimephales_notatus_vo ........C..............C..G..G..T..C..A........TC.A..T..G....................... MG570443.1_Notropis_hudsonius_is ...........T.....T.....C...........C..G........TC....C............T.A.....A..... MG570444.1_Rhinichthys_atratulus .....G..............G..C..C..G..T.....A..G..C...C....G..G.........T............. MG570445.1_Rhinichthys_atratulus .....G..............G..C..C..G..T.....A..G..C...C....G..G.........T............. MG570447.1_Luxilus_cornutus_isol .....G..C..............C.....G..T..C..A.....C..TC.A..C.....G......T....C.....T.. MG570449.1_Luxilus_cornutus_isol .....G..C..............C.....G..T..C..A.....C..TC.A..C.....G......T....C.....T.. MG570450.1_Pimephales_notatus_is ........C..............C..G..G..T..C..A........TC.A..T..G....................... MG570451.1_Notropis_bifrenatus_i ........C.....T.....G..C..C..G..T..G..A.....C...C.A..T..G.........T.A..C........ MG570453.1_Exoglossum_maxillingu .....G....................CT....T..C..A.....C..TC.A..C............T.A........... MG570454.1_Pimephales_promelas_i ........C..............C.....G..T.....G........TC.A..C..G.....T................. MG570455.1_Notropis_atherinoides ..G..G..C.................G..G..T..C..A........TC.A..C..G.........T....C........ MG570456.1_Notropis_atherinoides ..G..G..C....................G..T..C..A........TC.A..C..G.........T....C........ MG570457.1_Pimephales_notatus_is ........C..............C..G..G..T..C..A........TC.A..T..G....................... MG570458.1_Pimephales_notatus_is ........C..............C..G..G..T..C..A........TC.A..T..G....................... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .....G..C.................G..G..T..C..A.....C..TC.A..C..G.........T.A........... MT364325.1_Hybognathus_amarus_mi ..G..G..C....................G.....C..G........TC....T..G.........T.A........... MT501368.1_Gila_cypha_isolate_SN T..........T.T...G.....C..C...........T........TC....T........T..TT.A........... MT501369.1_Notropis_simus_pecose .....G..C..............C..C..G..T..C..G..G..C..TC....C..G.........T..........T.. MT501378.1_Hybognathus_amarus_is ..G..G..C....................G.....C..G........TC....T..G.........T.A........... MT501385.1_Notropis_jemezanus_vo ........C.................C..G..T..C..A.....C..TC....C..G..G......T....C........ MT501391.1_Rhinichthys_osculus_i .......................C..C..G..T..C..G.....C...C.A..G..G.........T.A........... MT667239.1_Rhinichthys_osculus_t .................G.....C..C..G..T..C..G.....C...C.A..G..G.........T.A........... MT667242.1_Luxilus_cornutus_vouc .....G..C..............C.....G..T..C..A.....C..TC.A..C.....G......T....C.....T.. MW300340.1_Hybognathus_placitus_ ........C.......................T..C..A........TC....T..G.........T............. MW300341.1_Hybognathus_placitus_ ........C.......................T..C..A........TC....T..G.........T............. NC_013763.1_Mylocheilus_caurinus .....G.....T.....G.....C..G.....T...........C...C.A.....G.....T...T.A........... NC_033926.1_Opsopoeodus_emiliae_ ........C........T...........C..T..A............CCAA.C..G...........A.....T..... NC_037008.1_Notropis_chalybaeus_ .................G.....C..G..G.....C..G.....C...C.A..G..G...........A........... NC_037009.1_Notropis_heterolepis ........C........G.....C..G..G..T..C..A........TC....C............T.A........... NC_037010.1_Rhinichthys_obtusus_ .......................C..C.....T.....A.....C...C.A..G..G.........T............. NC_037014.1_Notropis_hudsonius_i ...........T.....T.....C...........C..G........TC....C............T.A.....A..... NC_037015.1_Exoglossum_maxilling .....G....................CT....T..C..A.....C..TC.A..C............T.A........... NC_054086.1_Ptychocheilus_lucius T..........T.T...G..G..C..C.....................C....T........T..TT.A........T.. NC_054257.1_Gila_cypha_isolate_S T..........T.T...G.....C..C...........T........TC....T........T..TT.A........... NC_054259.1_Gila_nigrescens_isol T..........T.T...G..G..C..C.....................C....G..G.....T..TT............. NC_054260.1_Hybognathus_amarus_i ..G..G..C....................G.....C..G........TC....T..G.........T.A........... NC_054262.1_Notropis_jemezanus_v ........C.................C..G..T..C..A.....C..TC....C.....G......T....C........ Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 ........C..............C..C..G..T..C..A.....C..TC.A..C..G..G........C........... Pimephales_tenellus_parvice_R2S2 ........C..............C..C..G..T..C..A.....C..TC.A..C..G...........C........... Pimephales_notatus_R1S1_________ .....G..C..............C..CT.G.....C..A........TC.A..T..............A........... MG570452.1_Pimephales_promelas_i ........C..............C.....G..T.....G........TC.A..C..G.....T................. MG570452.1_Pimephales_promelas_S ........C..............C.....G..T.....A........TC.A..C..G.....T................. AB626850.1_Megalobrama_terminali CATCCTACGATCTATTCCAAACAAACTAGGAGGGGTCCTCGCATTACTATTCTCCATCTTAGTACTAATAGTAGTACCAA AP010779.1_Mylocheilus_caurinus_ ......G........C..G......T.............G..CC........AGT..T.....G..G.....C..G..G. AP011215.1_Gila_sp._1460_mitocho ...............C.....T.....G...............C..T.G..TAGT..TC.T......C....C..G..T. AP011263.1_Scardinius_erythropht ......C........C.....T..............T..T...C..T....TAG....C....G........T..G.... AP011267.1_Algansea_lacustris_mi T..T.....G..C........T..............T..A..GC........AG...TC.......GT.G..G..C.... AP011268.1_Yuriria_alta_mitochon T..T........C..C.................A.....A...C..T....TAG...TC....G..GT.......T..T. AP011273.1_Hybognathus_nuchalis_ T..T........C............T.......A.....G......T....TAGT...C........T.......C.... AP011274.1_Couesius_plumbeus_mit ..................T.....G..G........T..T..GC..T.G...AGT..TC....G..G.....T..C..C. AP011275.1_Platygobio_gracilis_m ...T........C..C..C.....G........A.....A...C..T.G...AG...TC.G......T....G.....G. AP011277.1_Erimystax_dissimilis_ .....................T.................A...C..T.....AG...TC........T.G..C.....C. AP011279.1_Pimephales_promelas_m T..T..G................................A...C.G.....TAG...TC.......CT.T.....C.... AP011280.1_Clinostomus_elongatus T...........C..C.....T.....G...........A..GC..T....TAG...T.....G..T.....C.....G. AP012079.1_Luxilus_chrysocephalu ...T..G..G..C..C........G........T.....A...C..T.....AG...T.........T.G.....C.... AP012080.1_Macrhybopsis_gelida_m T..T.....G..C........T.................A...C.......TAG...T.........C..........C. AP012083.1_Notropis_atherinoides T..T..C.....C..C..............G..A..T..G..GC....G...AG...TC.T......T.G..T..C.... AP012084.1_Notropis_baileyi_mito ...T.....................T.............A...C..T.....AGT..T.........T.......T.... AP012087.1_Cyprinella_galactura_ .........C..A..C..T..T...T....G.....T..A...C..T.....AG...TC.G...T..T.G..G..C.... AP012088.1_Hybopsis_lineapunctat T...T.......A..C.......................G...C..T....TAGT..TC.G...T..T....G..C.... AP012090.1_Luxilus_cornutus_mito T..T..C..G..C...........G.....G..A.....A..GC..T.G..TAG...T.....C...T.......C.... AP012091.1_Lythrurus_ardens_mito T.....C..G...............T....C........A..G...T....TAG...TC........C.G.....T.... AP012092.1_Lythrurus_fumeus_mito .........C.....C..............C..A.....G..G..GT.....AG.............C.......T..T. AP012093.1_Lythrurus_lirus_mitoc T.....G..G.....C.........T....C........G..G..GT.G..TAG...TC........C.G..G..T..G. AP012094.1_Lythrurus_umbratilis_ T.....G..G...............T....C........A..G...T....TAG...TC........C.G.....T.... AP012095.1_Macrhybopsis_meeki_mi T........G..C..C.....T...T.............A...........TAG.............C....G..T..C. AP012097.1_Notropis_bifrenatus_m ......C.....C..C.....T...T.............A..CC..T.....AGT...C.......GT.......C.... AP012098.1_Pimephales_sp._MCZunc T..T..G..G...........T..............T..A...C.......TAGT..TC.....T.GT....C..C.... AP012100.1_Notropis_telescopus_m T..T........C..C........G.....G..T.....G...C..T....TAGT...C.C......C.C..C..C.... AP012101.1_Pimephales_notatus_mi T..T..G..G...........T..............T..A..CC.......TAGT..TC.....T.GT....C..C.... AP012102.1_Pimephales_vigilax_mi ...............C........G..............A...C.......TAGT..T........TT....T..C.... AP012103.1_Pogonichthys_macrolep ...............C..G.....G..G..G..A.....A..TC.......TAGT..T.....G..G.....C..G.... AP012106.1_Richardsonius_balteat ...T..G........C...........G..G..A.....A..CC..T....TAG...T.....G..C..G..T....... AP012108.1_Notropis_chrosomus_mi ...T...........C........G..G..C........A..GC..T.....AG...TC.......TT....G..C..G. AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ...............C........G..............A...C.......TAGT..T........TT....T..C.... Pimephales_vigilax_R1S3_________ ...............C........G..............A...C.......TAGT..T........TT....T..C.... DQ536429.1_Notropis_stramineus_m T..T..G..G..C.....G..T..G..C.....A...T.G..GC.G..G...AG....C.C...T..T.......C.... JX910141.1_Squaliobarbus_curricu ...TT.......C.....T..T...........A.........C..............C..........G.......... KC351187.1_Squaliobarbus_curricu T..TT.......C.....T..T...........A.........C..............C..........G.......... KT278765.1_Pimephales_promelas_m T..T..C................................A...C.G.....TAG...T........CT.T.....C.... KT289925.1_Pimephales_promelas_m T..T..G................................A...C.G.....TAG...TC.......CT.T.....C..G. KT424924.1_Rhinichthys_osculus_m ...T.....G..............G........A.....A.....GT....TAG...T........TT.......G..G. KU200257.1_Chanodichthys_ilishae ...T.....G.....C..G....................T.....G........T..T.....C.....G..G....... MF972070.1_Siphateles_bicolor_mo T..............C..G..T.....................C.......TAGT...C.......GC.G..G....... MG570407.1_Notropis_chalybaeus_v ...T.............................T...T.A......T.....AG...T.........T.......T.... MG570408.1_Notropis_bifrenatus_v ......C.....C..C.....T...T.............A..CC..T.....AGT...C.......GT.......C.... MG570413.1_Notropis_heterolepis_ T.....G..G..C..C..............G..A.....A...C..T....TAG...T.........T.......C..G. MG570416.1_Rhinichthys_obtusus_v ...T........C.....G.....G..............G.....GT....TAG...TC.G..GT..C.G.....C..C. MG570417.1_Rhinichthys_obtusus_v ...T........C.....G.....G..............G.....GT....TAG...TC.G..GT..C.G.....C..C. MG570420.1_Pimephales_notatus_vo T..T..G..G...........T..............T..A...C.......TAGT..TC.....T.GT....C..C.... MG570443.1_Notropis_hudsonius_is T..T..G..C.....C..G.....G........A.....A..CC..T.G...AG....C.T..GT..T.......C..T. MG570444.1_Rhinichthys_atratulus T..T........C.....G.....G..............G......T....TAG....C........T....G..C..C. MG570445.1_Rhinichthys_atratulus T..T........C.....G.....G..............G......T....TAG....C........T....G..C..C. MG570447.1_Luxilus_cornutus_isol T..T..C..G..C...........G........A.....G..GC..T....TAG...T.....C...T.......C.... MG570449.1_Luxilus_cornutus_isol T..T..C..G..C...........G........A.....G..GC..T.G..TAG...T.....C...T.......C.... MG570450.1_Pimephales_notatus_is T..T..G..G...........T..............T..A...C.......TAGT..TC.....T.GT....C..C.... MG570451.1_Notropis_bifrenatus_i ......C.....C..C.....T...T.............A..CC..T.....AGT...C.......GT.......C.... MG570453.1_Exoglossum_maxillingu .....................T.................A...C..T.....AG...TC........T.G..C.....C. MG570454.1_Pimephales_promelas_i T..T..G................................A...C.G.....TAG...TC.......CT.T.....C..G. MG570455.1_Notropis_atherinoides T..T..C........C.................A..T..G..GC....G...AG...TC.T......T.G..T..T.... MG570456.1_Notropis_atherinoides T..T..C.....C..C..............G..A..T..G..GC....G...AG...TC.T......T.G..T..C.... MG570457.1_Pimephales_notatus_is T..T..G..G...........T..............T..A...C.......TAGT..TC.....T.GT....C..C.... MG570458.1_Pimephales_notatus_is T..T..G..G...........T..............T..A...C.......TAGT..TC.....T.GT....C..C.... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v ...T........G..C..C........C.....A.....G...C..T.....AG...TC.......TT....G..T..T. MT364325.1_Hybognathus_amarus_mi T........G.....C.........T.G.....A.....A......T.G...AGT...C.G......T.......C..T. MT501368.1_Gila_cypha_isolate_SN .....................T.....................C..T....TAGT..TC.T..G...C....T..G..T. MT501369.1_Notropis_simus_pecose T.....G........C..G..T..G.....G..A.....G...C..T.....AG...TC.......TT.G..G..C.... MT501378.1_Hybognathus_amarus_is T........G.....C.........T.G.....A.....A......T.G...AGT...C.C......T.......C..T. MT501385.1_Notropis_jemezanus_vo T..T..C..G..C..C..G.....G.....G..A..T..G..GC..T....TAG...TC........T....T..C.... MT501391.1_Rhinichthys_osculus_i ...T.....C..............G..G...........A...C..T....TAG...TC........T....G..G.... MT667239.1_Rhinichthys_osculus_t ...T.....C..............G..G...........A...C..T....TAG...TC........T....G..G.... MT667242.1_Luxilus_cornutus_vouc T..T..C..G..C...........G........A.....G..GC..T.G..TAG...T.....C...T.......C.... MW300340.1_Hybognathus_placitus_ T..T..G...........G......T.............G...C..T.G...AGT..TC.G......T.......C..G. MW300341.1_Hybognathus_placitus_ T..T..............G......T.............G...C..T.G...AGT..TC.G......T.......C..G. NC_013763.1_Mylocheilus_caurinus ......G........C..G......T.............G..CC........AGT..T.....G..G.....C..G..G. NC_033926.1_Opsopoeodus_emiliae_ T..TT................T...........A.........C.......TAGT..T......T..C.TA....C.... NC_037008.1_Notropis_chalybaeus_ ...T.............................T...T.A......T.....AG...T.........T.......T.... NC_037009.1_Notropis_heterolepis T.....G..G..C..C..............G..A.....A...C..T....TAG...T.........T.......C..G. NC_037010.1_Rhinichthys_obtusus_ ...T........C.....G.....G..............G.....GT....TAG...TC.G..GT..C.G.....C..C. NC_037014.1_Notropis_hudsonius_i T..T..G..C.....C..G.....G........A.....A..CC..T.G...AG....C.T..GT..T.......C..T. NC_037015.1_Exoglossum_maxilling .....................T.................A...C..T.....AG...TC........T.G..C.....C. NC_054086.1_Ptychocheilus_lucius .......................................T...C..T....TAGT..TC.T......C.......G..T. NC_054257.1_Gila_cypha_isolate_S .....................T.....................C..T....TAGT..TC.T..G...C....T..G..T. NC_054259.1_Gila_nigrescens_isol .....................T.....................C..T.G..TAGT..TC.T..G...C....C..G..T. NC_054260.1_Hybognathus_amarus_i T........G.....C.........T.G.....A.....A......T.G...AGT...C........T.......C..T. NC_054262.1_Notropis_jemezanus_v T..T..C..G..C..C........G.....G..A..T..G..GC..T....TAG...TC........T....T..C.... Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 ...T..C........C.......................A..GC.G.....TAGT..TC.....T..T.......C.... Pimephales_tenellus_parvice_R2S2 ...T..G........C.......................A...C.G.....TAGT..TC.....T..T.......C.... Pimephales_notatus_R1S1_________ ...T..C.....C........T..G........A.....G...C.......TAGT............T....C..C.... MG570452.1_Pimephales_promelas_i T..T..G................................A...C.G.....TAG...TC.......CT.T.....C..G. MG570452.1_Pimephales_promelas_S T..T..G................................A...C.G.....TAG...TC.......CT.T.....C.... AB626850.1_Megalobrama_terminali TCTTACACACTTCAAAACAACGAGGACTGACATTCCGCCCAATCACCCAATTCCTGTTCTGAACCCTAGTAGCAGATATA AP010779.1_Mylocheilus_caurinus_ .T........C........G........A..T..............T..G..T..A..............G......... AP011215.1_Gila_sp._1460_mitocho .TC....T..C.....G...........A..C........CG.A........TT.A...........G..G......... AP011263.1_Scardinius_erythropht .TC.......C.....G..G........A..T........CG.G..T.....TT.A...........G..T.....C..G AP011267.1_Algansea_lacustris_mi ..C.......C.....G...........A..C.....G..C..............A.........T.G..G......... AP011268.1_Yuriria_alta_mitochon .TC.......C..T..............A..C.....A..G............T....T......T.............G AP011273.1_Hybognathus_nuchalis_ .T.....T..C.................A..C.....A...........G...T.A..............G......... AP011274.1_Couesius_plumbeus_mit .TC.......C..G.....G..G.....C..T........T..G.....G.....A.........T.............G AP011275.1_Platygobio_gracilis_m .TC.......C.....G.....G.....A..C.....A...........G..TT.A.........T.......G..C..G AP011277.1_Erimystax_dissimilis_ .......T..C.................A..C.........G.............A.........T....G......... AP011279.1_Pimephales_promelas_m .T.....T..C.....G...........A..T.....A........T......T.A..............G......... AP011280.1_Clinostomus_elongatus .T........C...............T.A..T........GG.T........T..A........TT.............. AP012079.1_Luxilus_chrysocephalu .T........C..G..G...........A..C.....A...........G...T.A.........T....G..G...... AP012080.1_Macrhybopsis_gelida_m .T........C.....G...........A..C.....A.....T........TT.A........T............... AP012083.1_Notropis_atherinoides .T........C........G........A..C.....A...........G...T.A...........T..G........G AP012084.1_Notropis_baileyi_mito .TC.......C.................A..C.....A...............T.A...........G..G..G...... AP012087.1_Cyprinella_galactura_ .TC.......C.....G...........A..T.....A..C............T.A...........T..G......... AP012088.1_Hybopsis_lineapunctat ..........C.................A..C.....A...............T.A...........C..G..G...... AP012090.1_Luxilus_cornutus_mito .T........C..G..G...........A..T.....A...........G...T.A.........T....G......... AP012091.1_Lythrurus_ardens_mito ..........C.................A..C.....A..T..T.....G...T.A...........G..G.....C... AP012092.1_Lythrurus_fumeus_mito .TC.......C..G..............A..C.....G..G............T.A..T..............G...... AP012093.1_Lythrurus_lirus_mitoc ..........C.................A..C.....G..G..T.........T.A...........G..G..G..C... AP012094.1_Lythrurus_umbratilis_ .T........C.................A..C.....A..T..T.....G...T.A...........G..G.....C... AP012095.1_Macrhybopsis_meeki_mi .T.....T..C.....G.........T.A..C....................TT.A..T.....T............... AP012097.1_Notropis_bifrenatus_m .T........C.....G...........A..C.....G.....T.........T.A.........T....G......... AP012098.1_Pimephales_sp._MCZunc .T.....T..G.....G...........A..T.....A..C...........T..A....................C... AP012100.1_Notropis_telescopus_m .T........C.....G...........A..C.....A..C.....T......T.A..............G......... AP012101.1_Pimephales_notatus_mi .T.....T..G.....G...........A..T.....A..C...........TT.A....................C... AP012102.1_Pimephales_vigilax_mi ..........C.....G..G..G.....A..C.....A..............TT.A.........T....G..G...... AP012103.1_Pogonichthys_macrolep .T........C.................A..T.................G.....A...........G..G........G AP012106.1_Richardsonius_balteat .T........C...............T.A..T........CG.T........T..A.........T.............G AP012108.1_Notropis_chrosomus_mi .TC.......C.................A..T.....A...........G..TT.A.........T.G.....T.....G AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..........C.....G..G..G.....A..C.....A..............TT.A.........T....G..G...... Pimephales_vigilax_R1S3_________ ..........C.....G..G..G.....A..C.....A..............TT.A.........T....G..G...... DQ536429.1_Notropis_stramineus_m .T........C..G..............T..C.................G...T.A...........C..G..G.....G JX910141.1_Squaliobarbus_curricu ..........C..............G..A..T.....................T.A....................C..G KC351187.1_Squaliobarbus_curricu ..........C..............G..A..T.....................T.A....................C..G KT278765.1_Pimephales_promelas_m .T.....T..C.....G...........A..T.....A........T......T.A........................ KT289925.1_Pimephales_promelas_m .T.....T..C.....G...........A..T.....A........T......T.A..............G......... KT424924.1_Rhinichthys_osculus_m .T.....T..C..G..G..G........A..T.................G...T.A.........T.G..G.....C... KU200257.1_Chanodichthys_ilishae .T........C.................A...........G.....T........A........................ MF972070.1_Siphateles_bicolor_mo ..C.......C.....G...........A..T........T..G........T..A...........G..G.....C... MG570407.1_Notropis_chalybaeus_v .TC.......C..T..............A..C.....A..C........G...T.A..T......T....G......... MG570408.1_Notropis_bifrenatus_v .T........C.....G...........A..C.....G.....T.........T.A.........T....G......... MG570413.1_Notropis_heterolepis_ .T........C.....G...........A..T.....A..G.....T..G...T...........T..........C... MG570416.1_Rhinichthys_obtusus_v .......T..C........G..T...T.A..C..............T..G...T.A...........G..G......... MG570417.1_Rhinichthys_obtusus_v .......T..C........G..T...T.A..C..............T..G...T.A...........G..G......... MG570420.1_Pimephales_notatus_vo .T.....T..A.....G...........A..T.....A..C...........T..A....................C... MG570443.1_Notropis_hudsonius_is .T........................T.A..C.....A...........G...T.A.........T.G..G......... MG570444.1_Rhinichthys_atratulus .T..G.....C.....G.....G.....A..T..............T..G...T.A...........C..G........G MG570445.1_Rhinichthys_atratulus .T..G.....C.....G.....G.....A..T..............T..G...T.A...........C..G..G.....G MG570447.1_Luxilus_cornutus_isol .T........C..G..G...........A..C.....A...........G...T.A.........T....G......... MG570449.1_Luxilus_cornutus_isol .T........C..G..G...........A..C.....A...........G...T.A.........T....G......... MG570450.1_Pimephales_notatus_is .T.....T..G.....G...........A..T.....A..C...........T..A....................C... MG570451.1_Notropis_bifrenatus_i .T........C.....G...........A..C.....G.....T.........T.A.........T....G......... MG570453.1_Exoglossum_maxillingu .......T..C.................A..C.........G.............A.........T....G......... MG570454.1_Pimephales_promelas_i .T.....T..C.....G...........A..T.....A........T......T.A..............G......... MG570455.1_Notropis_atherinoides .T........C........G........A..C.....A...........G...T.A...........T..G......... MG570456.1_Notropis_atherinoides .T........C........G........A..C.....A...........G...T.A...........T..G........G MG570457.1_Pimephales_notatus_is .T.....T..G.....G...........A..T.....A..C...........T..A....................C... MG570458.1_Pimephales_notatus_is .T.....T..G.....G...........A..T.....A..C...........T..A....................C... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v .T........C..G............T.A..T.....A..T............T.A........TT.......T.....G MT364325.1_Hybognathus_amarus_mi .T.....T..C.................A..C.....A..G............T.A...........G..G.....C... MT501368.1_Gila_cypha_isolate_SN .TC.......C.................A..C........C..G........T..A..............G......... MT501369.1_Notropis_simus_pecose .T........C.................A..C.....G..C............T.A.........T....G.....C... MT501378.1_Hybognathus_amarus_is .T.....T..C.................A..C.....A..G............T.A...........C..G.....C... MT501385.1_Notropis_jemezanus_vo .T........C.................A..C.....A..C........G...T.A...........T..G........G MT501391.1_Rhinichthys_osculus_i .T.....T..C.....G..G........A..T.....T...........G...T.A.........T.G..G.....C... MT667239.1_Rhinichthys_osculus_t .T.....T..C.....G..G........A..T.....T...........G...T.A.........T.G..G.....C... MT667242.1_Luxilus_cornutus_vouc .T........C..G..G...........A..C.....A...........G...T.A.........T....G......... MW300340.1_Hybognathus_placitus_ .T.....T..C.................A..C.....A..G........G...T.A...........C..G.....C... MW300341.1_Hybognathus_placitus_ .T.....T..C.................A..C.....A..G........G...T.A...........C..G.....C... NC_013763.1_Mylocheilus_caurinus .T........C........G........A..T..............T..G..T..A..............G......... NC_033926.1_Opsopoeodus_emiliae_ ..........C.....G........GT.A..C..T..T..CT.T...........T.........T.............. NC_037008.1_Notropis_chalybaeus_ .TC.......C..T..............A..C.....A..C........G...T.A..T......T....G......... NC_037009.1_Notropis_heterolepis .T........C.....G...........A..T.....A..G.....T..G...T...........T..........C... NC_037010.1_Rhinichthys_obtusus_ .......T..C........G..T...T.A..C..............T..G...T.A...........G..G......... NC_037014.1_Notropis_hudsonius_i .T........................T.A..C.....A...........G...T.A.........T.G..G......... NC_037015.1_Exoglossum_maxilling .......T..C.................A..C.........G.............A.........T....G......... NC_054086.1_Ptychocheilus_lucius .TC.......C........G........A..C........TG.G........T..A...........C..G.....C... NC_054257.1_Gila_cypha_isolate_S .TC.......C.................A..C........C..G........T..A..............G......... NC_054259.1_Gila_nigrescens_isol .TC.......C........G.....G..A..C.....T..C..A........TT.A...........G..G......... NC_054260.1_Hybognathus_amarus_i .T.....T..C.................A..C.....A..G............T.A...........G..G.....C... NC_054262.1_Notropis_jemezanus_v .T........C.................A..C.....A..C........G...T.A...........T..G........G Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 .TC.......C.....G...........A..C....................T..A.......................G Pimephales_tenellus_parvice_R2S2 .TC.......C.....G...........A..C.....T..............T..A.......................G Pimephales_notatus_R1S1_________ .T.....T..C.................A..T.....A..C............T.A....................C... MG570452.1_Pimephales_promelas_i .T.....T..C.....G...........A..T.....A........T......T.A..............G......... MG570452.1_Pimephales_promelas_S .T.....T..C.....G...........A..T.....A........T......T.A...........G..G......... AB626850.1_Megalobrama_terminali ATCATTCTAACATGAATCGGAGGCATGCCCGTAGAACATCCATACATTATCATCGGACAAATCGCATCAGTCCTTTACTT AP010779.1_Mylocheilus_caurinus_ .....C..G.................A...........C..T.....C.....T..C........C.....T..A..... AP011215.1_Gila_sp._1460_mitocho C.T...T..........T..G.....A..T........C.....T..C..T.....C...GC.......A.T..A..... AP011263.1_Scardinius_erythropht ..T..C...........T..G.....A........G..C.........G.T..T..T..GG.......CA..T.A..... AP011267.1_Algansea_lacustris_mi G....C..G........T..G.................C.....T...........C...G....C.....T..G..... AP011268.1_Yuriria_alta_mitochon G.T.....G........T..G.....A..T.......................T..T........C.....T..G..... AP011273.1_Hybognathus_nuchalis_ ..T.....G........T........A..T........C..C..............C........C.....T..A..... AP011274.1_Couesius_plumbeus_mit C.T..C..T....................T........C.....TG.C..G..T..C...G........A..T.A..... AP011275.1_Platygobio_gracilis_m G.T..C...........T........A...........C..G...........T..C........C..G..T..G..... AP011277.1_Erimystax_dissimilis_ ..T.....G........T........A........G..C...........T.....C........G..C.....A..T.. AP011279.1_Pimephales_promelas_m ..T..............T..G..T..A..T........C.....TG.......T..C...G.A..C...A.T..A..... AP011280.1_Clinostomus_elongatus .....C..G........T..C.....A...........C.................C........G..G.....A..... AP012079.1_Luxilus_chrysocephalu ........G........T........A..T........C.................C...G....C.....T..G..... AP012080.1_Macrhybopsis_gelida_m ..T..C...........T........A..A........C........C.....T..C...G.T..C.....T..A..... AP012083.1_Notropis_atherinoides ..T.....G........T..G.....A..T........C..............T..T...G....C.....T..G..... AP012084.1_Notropis_baileyi_mito ..T.....G..............T..A..T.......................T..T...T.T.....C..T..A..... AP012087.1_Cyprinella_galactura_ C.T.................G..T..A..T.....G..C..T.....C..T..T..C..GG....C..C........... AP012088.1_Hybopsis_lineapunctat ..T..............T..G.....A..T..........................C........C.....T..G..... AP012090.1_Luxilus_cornutus_mito ..T.....G........T..G..T..A..T........C........C.....T..C...G....C.....T..A..... AP012091.1_Lythrurus_ardens_mito ..T.....G........T..T.....A..T........C.....T..C.....T..C..G.....C........G..... AP012092.1_Lythrurus_fumeus_mito ..T.....G.................A..T.....G..C.....T..C.....T..T..G.....C...A.T..A..... AP012093.1_Lythrurus_lirus_mitoc ..T.....G........T..T.....A..T........C.................C........C........G..... AP012094.1_Lythrurus_umbratilis_ ..T.....G........T..T.....A..T........C.....T..C.....T..C..GG....C........G..... AP012095.1_Macrhybopsis_meeki_mi ..T..C...........T........A..T.....G..C..............T..C...G.T..C...A.T..G..... AP012097.1_Notropis_bifrenatus_m ..T...T.G.................A..T........C.....T..C.....T..T..GG.A..C.....T..G..... AP012098.1_Pimephales_sp._MCZunc .................T..C.....A..T........C..............T..T........C.....T..A..... AP012100.1_Notropis_telescopus_m ..T.....G........T...........T...C....C..G........T..T..T..GG....C..C..T..C..... AP012101.1_Pimephales_notatus_mi ..T..............T..C.....A..T........C..............T..T........C.....T..A..... AP012102.1_Pimephales_vigilax_mi ..T..CT..........T........A..T..G.....C...........T..T..T........C...A.T..C..... AP012103.1_Pogonichthys_macrolep ..T..C.....G.....T........A..............T.....C.....T..T..GG........C.T..A..T.. AP012106.1_Richardsonius_balteat .....C..G..C..............A...........C.................C........G...A.T..A..... AP012108.1_Notropis_chrosomus_mi ..T.....G...........G..T..A..T........C.....T..C.....T..C...G....C.....T..A..... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ ..T..CT..........T........A..T..G.....C...........T..T..T........C...A.T..C..... Pimephales_vigilax_R1S3_________ ..T..CT..........T........A..T..G.....C...........T..T..T........C...A.T..C..... DQ536429.1_Notropis_stramineus_m ........G........T........A..T........C...........T..T..C........C........G..... JX910141.1_Squaliobarbus_curricu ..T.....G........T........A..T........C.....T.....T............................. KC351187.1_Squaliobarbus_curricu ..T.....G........T........A..T........C.....T.....T............................. KT278765.1_Pimephales_promelas_m ..T...T..........T..G.....A..T........C.....TG.......T..C...G.A..C.....T..A..... KT289925.1_Pimephales_promelas_m ..T...T..........T..G..T..A..T........C.....TG.......T..C...G.A..C...A.T..A..... KT424924.1_Rhinichthys_osculus_m ......T.G.................A...........C.....T..C.....T..C........G..G..G..G..... KU200257.1_Chanodichthys_ilishae ..T..C...........T........A..T................................T................. MF972070.1_Siphateles_bicolor_mo C.T..CT..........T..........................T...G.T..T..C..GGC.......A....A..... MG570407.1_Notropis_chalybaeus_v G.T...T......................T........C..............T..C...G....T.....T..A..... MG570408.1_Notropis_bifrenatus_v ..T...T.G.................A..T........C.....T..C.....T..T..GG.A..C.....T..G..... MG570413.1_Notropis_heterolepis_ ..T...T.G........T........A..T........C........C........C...G....C...A.T..G..... MG570416.1_Rhinichthys_obtusus_v GC...CT..........T........A........G..C.....T...........C........G.....G..A..... MG570417.1_Rhinichthys_obtusus_v GC...CT..........T........A........G..C.....T...........C........G.....G..A..... MG570420.1_Pimephales_notatus_vo .................T..C.....A..T........C..............T..T........C.....T..A..... MG570443.1_Notropis_hudsonius_is GCT..C..G.....G..T..G.....A..T........C.................C.....T..C..G..T..C..... MG570444.1_Rhinichthys_atratulus GCT..CT.G..G.....T........A........G..C.....T..CG....T..C........G..G..G..A..... MG570445.1_Rhinichthys_atratulus GCT..CT.G..G..............A...........C.....T..CG....T..C........G..G..G..A..... MG570447.1_Luxilus_cornutus_isol ..T.....G........T..G..T..A..T........C........CG....T..C..GG....C.....T..A..... MG570449.1_Luxilus_cornutus_isol ..T.....G........T..G..T..A..T........C........CG....T..C..GG....C.....T..A..... MG570450.1_Pimephales_notatus_is .................T..C.....A..T........C..............T..T........C.....T..A..... MG570451.1_Notropis_bifrenatus_i ..T...T.G.................A..T........C.....T..C.....T..T..GG.A..C.....T..G..... MG570453.1_Exoglossum_maxillingu ..T.....G........T........A........G..C...........T.....C........G..C.....A..T.. MG570454.1_Pimephales_promelas_i ..T...T..........T..G..T..A..T........C.....TG.......T..C...G.A..C...A.T..A..... MG570455.1_Notropis_atherinoides ..T.....G........T..G.....A..T.....G..C..............T..T...G....C.....T..G..... MG570456.1_Notropis_atherinoides ..T.....G........T..G.....A..T........C..............T..T...G....C.....T..G..... MG570457.1_Pimephales_notatus_is .................T..C.....A..T........C..............T..T........C.....T..A..... MG570458.1_Pimephales_notatus_is .................T..C.....A..T........C..............T..T........C.....T..A..... MK421554.1_Parabramis_pekinensis ..T...................................C......................................... MT333789.1_Notropis_lutipinnis_v ..T.....G...........C.....A...........C.....T.....T.....C...G....C..G..TT.A..... MT364325.1_Hybognathus_amarus_mi ..T.....G........T........A..T........C..C..............C........C...A.T..A..... MT501368.1_Gila_cypha_isolate_SN C.T..CT...................A.................T........T..C...GC.......A.T..A..... MT501369.1_Notropis_simus_pecose ..T..C..G...........G.....A..T........C...........T.....C...G....C.....T..C..... MT501378.1_Hybognathus_amarus_is ..T.....G........T........A..T........C..C..............C........C...A.T..A..... MT501385.1_Notropis_jemezanus_vo ..T.....G........T..G.....A..T........C.........G....T..T..GG....C.....T..G..... MT501391.1_Rhinichthys_osculus_i ......T.G........T....................C........C........C........G..G..G..G..... MT667239.1_Rhinichthys_osculus_t ......T.G..G.....T....................C........C........C........G..G..G..G..... MT667242.1_Luxilus_cornutus_vouc ..T.....G........T..G..T..A..T........C........CG....T..C..GG....C.....T..A..... MW300340.1_Hybognathus_placitus_ ..T.....G...........G........T..T.....C..C.....C........C...G....C.....T..G..... MW300341.1_Hybognathus_placitus_ ..T.....G...........G........T..T.....C..C.....C........C...G....C.....T..G..... NC_013763.1_Mylocheilus_caurinus .....C..G.................A...........C..T.....C.....T..C........C.....T..A..... NC_033926.1_Opsopoeodus_emiliae_ ..T...T..........T..G.....A...........C.....T.....T..T..T...G....C...A....A..... NC_037008.1_Notropis_chalybaeus_ G.T...T......................T........C..............T..C...G....T.....T..A..... NC_037009.1_Notropis_heterolepis ..T...T.G........T........A..T........C........C........C...G....C...A.T..G..... NC_037010.1_Rhinichthys_obtusus_ GC...CT..........T........A........G..C.....T...........C........G.....G..A..... NC_037014.1_Notropis_hudsonius_i GCT..C..G.....G..T..G.....A..T........C.................C.....T..C..G..T..C..... NC_037015.1_Exoglossum_maxilling ..T.....G........T........A........G..C...........T.....C........G..C.....A..T.. NC_054086.1_Ptychocheilus_lucius C.T..CT..........T.....T..A.................T...G.T..T..T..GGC.......A.T..A..... NC_054257.1_Gila_cypha_isolate_S C.T..CT...................A.................T........T..C...GC.......A.T..A..... NC_054259.1_Gila_nigrescens_isol C.T..CT..........T..G..T..A..T........C.....T........T..C...GC.......A.T..A..... NC_054260.1_Hybognathus_amarus_i ..T.....G........T........A..T........C..C..............C........C...A.T..A..... NC_054262.1_Notropis_jemezanus_v ..T.....G........T..G.....A..T........C..............T..C..GG....C.....T..G..... Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 T.A...T..........T........A..T........C........C.....T..C...G....T.....T..A..... Pimephales_tenellus_parvice_R2S2 C.A...T..........T........A..T........C........C.....T..C...G....T.....T..A..... Pimephales_notatus_R1S1_________ ..T...T..........T..C.....A..T........C........C.....T..T........C........A..... MG570452.1_Pimephales_promelas_i ..T...T..........T..G..T..A..T........C.....TG.......T..C...G.A..C...A.T..A..... MG570452.1_Pimephales_promelas_S ..T..............T..G..T..A..T........C.....TG.......T..C...G.A..C...A.T..A..... AB626850.1_Megalobrama_terminali CGCATTATTCCTCATCCTCACCCCGCTAGCAGGATGGGTGGAAAACAAAGCACTAAAATGAGCTTGCCCTAGTAGCTTAG AP010779.1_Mylocheilus_caurinus_ T...C.C.....TG.T..TG....C..T.....T..A..A..G..T........G......................... AP011215.1_Gila_sp._1460_mitocho T...C.T.....T..T..TGT...A...........A..A.....T........G......................... AP011263.1_Scardinius_erythropht T...C.C.....T..T....TT..A..........TAA.......T......T.G........C................ AP011267.1_Algansea_lacustris_mi T...C........C....TG....A..T.....C..A.CA..G.........T.G......................... AP011268.1_Yuriria_alta_mitochon T...........TC.....G....T..C........A.CA..G..T......T.G......................... AP011273.1_Hybognathus_nuchalis_ ......G......C.....G....A..C.....C..A.CA.....T........G........C................ AP011274.1_Couesius_plumbeus_mit T...C.C...........T.T...A...A.......A..T..G...........G........C................ AP011275.1_Platygobio_gracilis_m .............C.....G....A..C........A.C......T.................................. AP011277.1_Erimystax_dissimilis_ ...GC.C......G.T...G.......C........AA.......T........G......................... AP011279.1_Pimephales_promelas_m T...........TC.T..TG....A..T........A.....G..T......T.G......................... AP011280.1_Clinostomus_elongatus T...C.C.....AG.T..TG.......T.....G..A...............T........................... AP012079.1_Luxilus_chrysocephalu .............C.T..TG....A..C..........CA..G..T........G......................... AP012080.1_Macrhybopsis_gelida_m T...C.............TG....A..C.....T..A.CC.....T........G......................... AP012083.1_Notropis_atherinoides T............C.T..T.....A..C.....T..A.C...G..T......T........................... AP012084.1_Notropis_baileyi_mito ............AC.T...G.......T.....T..A.CA..G..T......T.G......................... AP012087.1_Cyprinella_galactura_ T...C........C..........A..T.....T..A.C...G..T.................................. AP012088.1_Hybopsis_lineapunctat .............C.....G....A..T.....G..A.CA.....T......T.G......................... AP012090.1_Luxilus_cornutus_mito .............C.T..TG....A..C.....G..A.CA..G..T......T.G......................... AP012091.1_Lythrurus_ardens_mito T............C.....G....A..C.....T..A.C...G..T......T.G......................... AP012092.1_Lythrurus_fumeus_mito T...C........C.....G....A..C..G.....A.C......T......T.G......................... AP012093.1_Lythrurus_lirus_mitoc T............C.....G.......C.....T..A.CC..G..T.....GT.G......................... AP012094.1_Lythrurus_umbratilis_ T............C.....G....A..C.....T..A.C...G..T......T.G......................... AP012095.1_Macrhybopsis_meeki_mi T...C.......T.......T...A..C.....T....CC.....T........T........................A AP012097.1_Notropis_bifrenatus_m T..T.........C.T..TG....A..C.....C..A.CA.....T......T.G......................... AP012098.1_Pimephales_sp._MCZunc T...........TC.T........T..T.....G..A.CA..G..T......T.G......................... AP012100.1_Notropis_telescopus_m T.....G.....TC.T........A..T..G..C..A.CA............T.G......................... AP012101.1_Pimephales_notatus_mi T...........TC..........T..T........A.CA..G..T......T.G......................... AP012102.1_Pimephales_vigilax_mi T........T..TC.T..T..A..T..T........A..A.....T......T.G......................... AP012103.1_Pogonichthys_macrolep T...C.C......G.T..TGT...A..T.....T..A..A..G..T........G......................... AP012106.1_Richardsonius_balteat T...C.C.....TG.T..TG.......T.....G..A........T......T.G............T............ AP012108.1_Notropis_chrosomus_mi T.....G......C.....G....A..T..C.....A.CA.....T......T........................... AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ T........T..TC.T..T..A..T..T........A..A.....T......T.G......................... Pimephales_vigilax_R1S3_________ T........T..TC.T..T..A..T..T........A..A.....T......T.G......................... DQ536429.1_Notropis_stramineus_m T.....G......C.....G....A..T..C..C..A.C...G........C..G......................... JX910141.1_Squaliobarbus_curricu ....C..........T........A...........AC.A.....T.................................. KC351187.1_Squaliobarbus_curricu ....C..........T........A...........AC.A.....T.................................. KT278765.1_Pimephales_promelas_m T...C.......TC.T..TG....A..T........A.C...G..T......T.G......................... KT289925.1_Pimephales_promelas_m T...........TC.T..TG....A..T........A.CA..G..T......T.G......................... KT424924.1_Rhinichthys_osculus_m ....C.C......G.T...G.......C.....G..A.CT..G..T......T.G......................... KU200257.1_Chanodichthys_ilishae .....................T..A...........AC.A.....T.................................. MF972070.1_Siphateles_bicolor_mo T...C.T.....TG.T..TGT...A..G.....G..A..A.....T......T.G......................... MG570407.1_Notropis_chalybaeus_v T............C.T..TG....A..T........A.CA..G..T......T........................... MG570408.1_Notropis_bifrenatus_v T..T.........C.T..TG....A..C.....C..A.CA.....T........G......................... MG570413.1_Notropis_heterolepis_ T............C.T..TG....A..C........A.CA.....T........G......................... MG570416.1_Rhinichthys_obtusus_v ....C.C.....TC.T...G....A..C.....G....CA..G..T......T.G......................... MG570417.1_Rhinichthys_obtusus_v ....C.C.....TC.T...G....A..C.....G....CA..G..T......T.G......................... MG570420.1_Pimephales_notatus_vo T...........TC.T........T..T........A.CA..G..T......T.G......................... MG570443.1_Notropis_hudsonius_is ....C.T......C.TT..G.G..A..C..C.....A.CA.....T.....G..G......................... MG570444.1_Rhinichthys_atratulus ....C.C.....TC.T...G.......C.....G....CA.....T......T.G......................... MG570445.1_Rhinichthys_atratulus ....C.C.....TC.T...G.......C.....G....CA.....T......T.G......................... MG570447.1_Luxilus_cornutus_isol .............C.T..TG....A..C.....G..A.CA..G..T......T.G......................... MG570449.1_Luxilus_cornutus_isol .............C.T..TG....A..C.....G..A.CA..G..T......T.G......................... MG570450.1_Pimephales_notatus_is T...........TC.T........T..T........A.CA..G..T......T.G......................... MG570451.1_Notropis_bifrenatus_i T..T.........C.T..TG....A..C.....C..A.CA.....T........G......................... MG570453.1_Exoglossum_maxillingu ...GC.C......G.T...G.......C........AA.......T........G......................... MG570454.1_Pimephales_promelas_i T...........TC.T..TG....A..T........A.CA..G..T......T.G......................... MG570455.1_Notropis_atherinoides T............C.T..T.....A..C.....T..A.C...G..T......T........................... MG570456.1_Notropis_atherinoides T............C.T..T.....A..C.....T..A.C...G..T......T........................... MG570457.1_Pimephales_notatus_is T...........TC.T........T..T........A.CA..G..T......T.G......................... MG570458.1_Pimephales_notatus_is T...........TC.T........T..T........A.CA..G..T......T.G......................... MK421554.1_Parabramis_pekinensis ................................................................................ MT333789.1_Notropis_lutipinnis_v T............C.T...G....A..T..C..G..A.CA.....T......T........................... MT364325.1_Hybognathus_amarus_mi ......G......C.....G....A..C.....T..A.CA..G..T........G........C..............G. MT501368.1_Gila_cypha_isolate_SN T...C.T.....TG.T..TGT......G........A..A.....T........G......................... MT501369.1_Notropis_simus_pecose ...GC........C.....G....A..C..C..G..A.CA..G..T......T........................... MT501378.1_Hybognathus_amarus_is ......G......C.....G....A..C.....T..A.CA..G..T........G........C................ MT501385.1_Notropis_jemezanus_vo T............C.T..T.....A..C.....T..A.CA..G..T......T........................... MT501391.1_Rhinichthys_osculus_i ....C.C.....TC.T...G....C..C.....G..A.CC..G..T......T.G......................... MT667239.1_Rhinichthys_osculus_t ....C.C.....TC.T...G....C..C.....G..A.CC..G..T......T.G......................... MT667242.1_Luxilus_cornutus_vouc .............C.T..TG....A..C.....G..A.CA..G..T......T.G......................... MW300340.1_Hybognathus_placitus_ .............C.T...G....A..C..G..T..A.CA..G..T......T.G........C................ MW300341.1_Hybognathus_placitus_ .............C.T...G....A..C..G..T..A.CA..G..T......T.G........C................ NC_013763.1_Mylocheilus_caurinus T...C.C.....TG.T..TG....C..T.....T..A..A..G..T........G......................... NC_033926.1_Opsopoeodus_emiliae_ T........T...C.A....A...T..T.....C..A.CA..G..T....T....G...A....C............... NC_037008.1_Notropis_chalybaeus_ T............C.T..TG....A..T........A.CA..G..T......T........................... NC_037009.1_Notropis_heterolepis T............C.T..TG....A..C........A.CA.....T........G......................... NC_037010.1_Rhinichthys_obtusus_ ....C.C.....TC.T...G....A..C.....G....CA..G..T......T.G......................... NC_037014.1_Notropis_hudsonius_i ....C.T......C.TT..G.G..A..C..C.....A.CA.....T.....G..G......................... NC_037015.1_Exoglossum_maxilling ...GC.C......G.T...G.......C........AA.......T........G......................... NC_054086.1_Ptychocheilus_lucius T...C.T..T..TG.T..T.TT..A...........A..A.....T......T.G......................... NC_054257.1_Gila_cypha_isolate_S T...C.T.....TG.T..TGT......G........A..A.....T........G......................... NC_054259.1_Gila_nigrescens_isol T...C.T.....T..T..TGT...............A.................G......................... NC_054260.1_Hybognathus_amarus_i ......G......C.....G....A..C.....T..A.CA..G..T........G........C................ NC_054262.1_Notropis_jemezanus_v T............C.T..T.....A..C.....T..A.CA..G..T......T........................... Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 T........T..TC.....G....A..T........A.CA..G..T........G......................... Pimephales_tenellus_parvice_R2S2 T........T..TC.....G....A..T........A.CA..G..T........G......................... Pimephales_notatus_R1S1_________ T...........TC.T........C..T.....G..A.CA..G..T........G......................... MG570452.1_Pimephales_promelas_i T...........TC.T..TG....A..T........A.CA..G..T......T.G......................... MG570452.1_Pimephales_promelas_S T...........TC.T..TG....A..T........A.....G..T......T.G......................... AB626850.1_Megalobrama_terminali -TATAAAAGCATCGGTCTTGTAATCCGAAGATCGGAGGTTAAATTCCCCCCTAGCGC----------------------- AP010779.1_Mylocheilus_caurinus_ -CT...............................AG.......C....T........----------------------- AP011215.1_Gila_sp._1460_mitocho -CC...............................AG.......CC...T........----------------------- AP011263.1_Scardinius_erythropht -CT.G.............................AG.......C....T........----------------------- AP011267.1_Algansea_lacustris_mi -.T.G.............................AG.......CC...T........----------------------- AP011268.1_Yuriria_alta_mitochon -.T.G.............................AG.......CC...T........----------------------- AP011273.1_Hybognathus_nuchalis_ -.T.T....................A........AG.......CC...T........----------------------- AP011274.1_Couesius_plumbeus_mit -CC.T.............................AG............T........----------------------- AP011275.1_Platygobio_gracilis_m -.T...............................AG.......CC...T........----------------------- AP011277.1_Erimystax_dissimilis_ -.T...............................AG.......CC...T........----------------------- AP011279.1_Pimephales_promelas_m -CT.G.............................AG.......CC...T........----------------------- AP011280.1_Clinostomus_elongatus -CT...............................AG............T........----------------------- AP012079.1_Luxilus_chrysocephalu -CT.G.............................AG.......CC...T........----------------------- AP012080.1_Macrhybopsis_gelida_m -...............................T.AG....T..CC...T........----------------------- AP012083.1_Notropis_atherinoides -.T.G.............................AG.....G.CC...T........----------------------- AP012084.1_Notropis_baileyi_mito -.T.C.............................AG.......CC...T........----------------------- AP012087.1_Cyprinella_galactura_ T.T...............................AG.......CC...T........----------------------- AP012088.1_Hybopsis_lineapunctat -AT.T.............................AG.......CC...T........----------------------- AP012090.1_Luxilus_cornutus_mito -CT.G.............................AG.......CC...T........----------------------- AP012091.1_Lythrurus_ardens_mito -.T.G.............................AG.......CC...T........----------------------- AP012092.1_Lythrurus_fumeus_mito -.T.T.............................AG.......CC...T........----------------------- AP012093.1_Lythrurus_lirus_mitoc -.T.G.............................AG.......CC...T........----------------------- AP012094.1_Lythrurus_umbratilis_ -.T.G.............................AG.......CC...T........----------------------- AP012095.1_Macrhybopsis_meeki_mi -CG.G...........................T.AG.......CC...T........----------------------- AP012097.1_Notropis_bifrenatus_m -.C.T.............................AG.......CC...T........----------------------- AP012098.1_Pimephales_sp._MCZunc -CT.G.............................AG.......CC...T........----------------------- AP012100.1_Notropis_telescopus_m -.T.T.............................AG.....G.CC...T........CCAGACCCAAAGGAAAGGAGATT AP012101.1_Pimephales_notatus_mi -CT.G.............................AG.......CC...T........----------------------- AP012102.1_Pimephales_vigilax_mi -CT.G.............................AG.......CC...T........----------------------- AP012103.1_Pogonichthys_macrolep --C.T.............................AG............T........----------------------- AP012106.1_Richardsonius_balteat -CC...............................AG............T........----------------------- AP012108.1_Notropis_chrosomus_mi -.T.G.............................AG.......CC...T........----------------------- AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ -CT.G.............................AG.......CC...T........----------------------- Pimephales_vigilax_R1S3_________ -CT.G.............................AG.......CC...T........----------------------- DQ536429.1_Notropis_stramineus_m -.T.C.............................AG.......CC...T........----------------------- JX910141.1_Squaliobarbus_curricu -CC............................................T......A..----------------------- KC351187.1_Squaliobarbus_curricu -CC............................................T......A..----------------------- KT278765.1_Pimephales_promelas_m -CT.G.............................AG.......CC...T........----------------------- KT289925.1_Pimephales_promelas_m -CT.G.............................AG.......CC...T........----------------------- KT424924.1_Rhinichthys_osculus_m -CT.G......C...............G......AG.......CC...T........----------------------- KU200257.1_Chanodichthys_ilishae -...T....................................................----------------------- MF972070.1_Siphateles_bicolor_mo -CT...............................AG........C...T........----------------------- MG570407.1_Notropis_chalybaeus_v -.T.G.............................AG.......CC...T........----------------------- MG570408.1_Notropis_bifrenatus_v -.C.T.............................AG.......CC...T........----------------------- MG570413.1_Notropis_heterolepis_ -.T.C.............................AG.......CC...T........----------------------- MG570416.1_Rhinichthys_obtusus_v -CT.G..........................C..AG.......CC...T........----------------------- MG570417.1_Rhinichthys_obtusus_v -CT.G..........................C..AG.......CC...T........----------------------- MG570420.1_Pimephales_notatus_vo -CT.G.............................AG.......CC...T........----------------------- MG570443.1_Notropis_hudsonius_is -.T.T.............................AG.......CC...T........----------------------- MG570444.1_Rhinichthys_atratulus -CT.G......C......................AG.......CC...T........----------------------- MG570445.1_Rhinichthys_atratulus -CT.G......C......................AG.......CC...T........----------------------- MG570447.1_Luxilus_cornutus_isol -CT.G.............................AG.......CC...T........----------------------- MG570449.1_Luxilus_cornutus_isol -CT.G.............................AG.......CC...T........----------------------- MG570450.1_Pimephales_notatus_is -CT.G.............................AG.......CC...T........----------------------- MG570451.1_Notropis_bifrenatus_i -.C.T.............................AG.......CC...T........----------------------- MG570453.1_Exoglossum_maxillingu -.T...............................AG.......CC...T........----------------------- MG570454.1_Pimephales_promelas_i -CT.G.............................AG.......CC...T........----------------------- MG570455.1_Notropis_atherinoides -.T.G.............................AG.......CC...T........----------------------- MG570456.1_Notropis_atherinoides -.T.G.............................AG.....G.CC...T........----------------------- MG570457.1_Pimephales_notatus_is -CT.G.............................AG.......CC...T........----------------------- MG570458.1_Pimephales_notatus_is -CT.G.............................AG.......CC...T........----------------------- MK421554.1_Parabramis_pekinensis -........................................................----------------------- MT333789.1_Notropis_lutipinnis_v -.C...............................AG......GCC...T........----------------------- MT364325.1_Hybognathus_amarus_mi -.T.T.............................AG.......CC...T........----------------------- MT501368.1_Gila_cypha_isolate_SN -CC...............................AG.......CC...T........----------------------- MT501369.1_Notropis_simus_pecose -.T.G.............................AG.......CC...T........----------------------- MT501378.1_Hybognathus_amarus_is -.T.T.............................AG.......CC...T........----------------------- MT501385.1_Notropis_jemezanus_vo -AT.G.............................AG.......CC...T........----------------------- MT501391.1_Rhinichthys_osculus_i -CT.G......C...............G......AG.......CC...T........----------------------- MT667239.1_Rhinichthys_osculus_t -CT.G......C...............G......AG.......CC...T........----------------------- MT667242.1_Luxilus_cornutus_vouc -CT.G.............................AG.......CC...T........----------------------- MW300340.1_Hybognathus_placitus_ -.T.T.............................AG.......CC...T........----------------------- MW300341.1_Hybognathus_placitus_ -.T.T.............................AG.......CC...T........----------------------- NC_013763.1_Mylocheilus_caurinus -CT...............................AG.......C....T........----------------------- NC_033926.1_Opsopoeodus_emiliae_ -CC...............................AG..C....CC...T........----------------------- NC_037008.1_Notropis_chalybaeus_ -.T.G.............................AG.......CC...T........----------------------- NC_037009.1_Notropis_heterolepis -.T.C.............................AG.......CC...T........----------------------- NC_037010.1_Rhinichthys_obtusus_ -CT.G..........................C..AG.......CC...T........----------------------- NC_037014.1_Notropis_hudsonius_i -.T.T.............................AG.......CC...T........----------------------- NC_037015.1_Exoglossum_maxilling -.T...............................AG.......CC...T........----------------------- NC_054086.1_Ptychocheilus_lucius -.T...............................AG.......CC...T........----------------------- NC_054257.1_Gila_cypha_isolate_S -CC...............................AG.......CC...T........----------------------- NC_054259.1_Gila_nigrescens_isol -C................................AG.......CC...T........----------------------- NC_054260.1_Hybognathus_amarus_i -.T.T.............................AG.......CC...T........----------------------- NC_054262.1_Notropis_jemezanus_v -AT.G.............................AG.......CC...T........----------------------- Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 -CT...............................AG.......CC...T........----------------------- Pimephales_tenellus_parvice_R2S2 -CT...............................AG.......CC...T........----------------------- Pimephales_notatus_R1S1_________ -CT.G.............................AG.......CC...T........----------------------- MG570452.1_Pimephales_promelas_i -CT.G.............................AG.......CC...T........----------------------- MG570452.1_Pimephales_promelas_S -CT.G.............................AG.......CC...T........----------------------- AB626850.1_Megalobrama_terminali -------------------------------------------------------------------------------- AP010779.1_Mylocheilus_caurinus_ -------------------------------------------------------------------------------- AP011215.1_Gila_sp._1460_mitocho -------------------------------------------------------------------------------- AP011263.1_Scardinius_erythropht -------------------------------------------------------------------------------- AP011267.1_Algansea_lacustris_mi -------------------------------------------------------------------------------- AP011268.1_Yuriria_alta_mitochon -------------------------------------------------------------------------------- AP011273.1_Hybognathus_nuchalis_ -------------------------------------------------------------------------------- AP011274.1_Couesius_plumbeus_mit -------------------------------------------------------------------------------- AP011275.1_Platygobio_gracilis_m -------------------------------------------------------------------------------- AP011277.1_Erimystax_dissimilis_ -------------------------------------------------------------------------------- AP011279.1_Pimephales_promelas_m -------------------------------------------------------------------------------- AP011280.1_Clinostomus_elongatus -------------------------------------------------------------------------------- AP012079.1_Luxilus_chrysocephalu -------------------------------------------------------------------------------- AP012080.1_Macrhybopsis_gelida_m -------------------------------------------------------------------------------- AP012083.1_Notropis_atherinoides -------------------------------------------------------------------------------- AP012084.1_Notropis_baileyi_mito -------------------------------------------------------------------------------- AP012087.1_Cyprinella_galactura_ -------------------------------------------------------------------------------- AP012088.1_Hybopsis_lineapunctat -------------------------------------------------------------------------------- AP012090.1_Luxilus_cornutus_mito -------------------------------------------------------------------------------- AP012091.1_Lythrurus_ardens_mito -------------------------------------------------------------------------------- AP012092.1_Lythrurus_fumeus_mito -------------------------------------------------------------------------------- AP012093.1_Lythrurus_lirus_mitoc -------------------------------------------------------------------------------- AP012094.1_Lythrurus_umbratilis_ -------------------------------------------------------------------------------- AP012095.1_Macrhybopsis_meeki_mi -------------------------------------------------------------------------------- AP012097.1_Notropis_bifrenatus_m -------------------------------------------------------------------------------- AP012098.1_Pimephales_sp._MCZunc -------------------------------------------------------------------------------- AP012100.1_Notropis_telescopus_m TTGACTCCACCCCCGGCGCCAGACCCAAAGGAAAGGAAATTTTGACTCCACCCCCGGCGCCAGACCCAAAGGAGAGGAGA AP012101.1_Pimephales_notatus_mi -------------------------------------------------------------------------------- AP012102.1_Pimephales_vigilax_mi -------------------------------------------------------------------------------- AP012103.1_Pogonichthys_macrolep -------------------------------------------------------------------------------- AP012106.1_Richardsonius_balteat -------------------------------------------------------------------------------- AP012108.1_Notropis_chrosomus_mi -------------------------------------------------------------------------------- AY216542.1_Lythrurus_umbratilus_ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ -------------------------------------------------------------------------------- Pimephales_vigilax_R1S3_________ -------------------------------------------------------------------------------- DQ536429.1_Notropis_stramineus_m -------------------------------------------------------------------------------- JX910141.1_Squaliobarbus_curricu -------------------------------------------------------------------------------- KC351187.1_Squaliobarbus_curricu -------------------------------------------------------------------------------- KT278765.1_Pimephales_promelas_m -------------------------------------------------------------------------------- KT289925.1_Pimephales_promelas_m -------------------------------------------------------------------------------- KT424924.1_Rhinichthys_osculus_m -------------------------------------------------------------------------------- KU200257.1_Chanodichthys_ilishae -------------------------------------------------------------------------------- MF972070.1_Siphateles_bicolor_mo -------------------------------------------------------------------------------- MG570407.1_Notropis_chalybaeus_v -------------------------------------------------------------------------------- MG570408.1_Notropis_bifrenatus_v -------------------------------------------------------------------------------- MG570413.1_Notropis_heterolepis_ -------------------------------------------------------------------------------- MG570416.1_Rhinichthys_obtusus_v -------------------------------------------------------------------------------- MG570417.1_Rhinichthys_obtusus_v -------------------------------------------------------------------------------- MG570420.1_Pimephales_notatus_vo -------------------------------------------------------------------------------- MG570443.1_Notropis_hudsonius_is -------------------------------------------------------------------------------- MG570444.1_Rhinichthys_atratulus -------------------------------------------------------------------------------- MG570445.1_Rhinichthys_atratulus -------------------------------------------------------------------------------- MG570447.1_Luxilus_cornutus_isol -------------------------------------------------------------------------------- MG570449.1_Luxilus_cornutus_isol -------------------------------------------------------------------------------- MG570450.1_Pimephales_notatus_is -------------------------------------------------------------------------------- MG570451.1_Notropis_bifrenatus_i -------------------------------------------------------------------------------- MG570453.1_Exoglossum_maxillingu -------------------------------------------------------------------------------- MG570454.1_Pimephales_promelas_i -------------------------------------------------------------------------------- MG570455.1_Notropis_atherinoides -------------------------------------------------------------------------------- MG570456.1_Notropis_atherinoides -------------------------------------------------------------------------------- MG570457.1_Pimephales_notatus_is -------------------------------------------------------------------------------- MG570458.1_Pimephales_notatus_is -------------------------------------------------------------------------------- MK421554.1_Parabramis_pekinensis -------------------------------------------------------------------------------- MT333789.1_Notropis_lutipinnis_v -------------------------------------------------------------------------------- MT364325.1_Hybognathus_amarus_mi -------------------------------------------------------------------------------- MT501368.1_Gila_cypha_isolate_SN -------------------------------------------------------------------------------- MT501369.1_Notropis_simus_pecose -------------------------------------------------------------------------------- MT501378.1_Hybognathus_amarus_is -------------------------------------------------------------------------------- MT501385.1_Notropis_jemezanus_vo -------------------------------------------------------------------------------- MT501391.1_Rhinichthys_osculus_i -------------------------------------------------------------------------------- MT667239.1_Rhinichthys_osculus_t -------------------------------------------------------------------------------- MT667242.1_Luxilus_cornutus_vouc -------------------------------------------------------------------------------- MW300340.1_Hybognathus_placitus_ -------------------------------------------------------------------------------- MW300341.1_Hybognathus_placitus_ -------------------------------------------------------------------------------- NC_013763.1_Mylocheilus_caurinus -------------------------------------------------------------------------------- NC_033926.1_Opsopoeodus_emiliae_ -------------------------------------------------------------------------------- NC_037008.1_Notropis_chalybaeus_ -------------------------------------------------------------------------------- NC_037009.1_Notropis_heterolepis -------------------------------------------------------------------------------- NC_037010.1_Rhinichthys_obtusus_ -------------------------------------------------------------------------------- NC_037014.1_Notropis_hudsonius_i -------------------------------------------------------------------------------- NC_037015.1_Exoglossum_maxilling -------------------------------------------------------------------------------- NC_054086.1_Ptychocheilus_lucius -------------------------------------------------------------------------------- NC_054257.1_Gila_cypha_isolate_S -------------------------------------------------------------------------------- NC_054259.1_Gila_nigrescens_isol -------------------------------------------------------------------------------- NC_054260.1_Hybognathus_amarus_i -------------------------------------------------------------------------------- NC_054262.1_Notropis_jemezanus_v -------------------------------------------------------------------------------- Pimephales_notatus_R2S3_________ -------------------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 -------------------------------------------------------------------------------- Pimephales_tenellus_parvice_R2S2 -------------------------------------------------------------------------------- Pimephales_notatus_R1S1_________ -------------------------------------------------------------------------------- MG570452.1_Pimephales_promelas_i -------------------------------------------------------------------------------- MG570452.1_Pimephales_promelas_S -------------------------------------------------------------------------------- AB626850.1_Megalobrama_terminali -------------------CCAGAAAAGAGAGATTTTAACTCCCACCCCTGGCTCCCAAAGCCAGAA AP010779.1_Mylocheilus_caurinus_ -------------------........AG...................................... AP011215.1_Gila_sp._1460_mitocho -------------------................................................ AP011263.1_Scardinius_erythropht -------------------........AG...................................... AP011267.1_Algansea_lacustris_mi -------------------........AG....................................G. AP011268.1_Yuriria_alta_mitochon -------------------........AG...................................... AP011273.1_Hybognathus_nuchalis_ -------------------........AG....................................G. AP011274.1_Couesius_plumbeus_mit -------------------T.......AG...................................... AP011275.1_Platygobio_gracilis_m -------------------........AG...............G....................G. AP011277.1_Erimystax_dissimilis_ --------------------..A..G.AG......C............................... AP011279.1_Pimephales_promelas_m -------------------........AG..................................-... AP011280.1_Clinostomus_elongatus -------------------........AG..................T................... AP012079.1_Luxilus_chrysocephalu -------------------........AG....................................G. AP012080.1_Macrhybopsis_gelida_m -------------------........AG...................................... AP012083.1_Notropis_atherinoides -------------------........AG....................................G. AP012084.1_Notropis_baileyi_mito -------------------........AG....................................G. AP012087.1_Cyprinella_galactura_ -------------------........AG....................................G. AP012088.1_Hybopsis_lineapunctat -------------------........A.........CG............................ AP012090.1_Luxilus_cornutus_mito -------------------........AG....................................G. AP012091.1_Lythrurus_ardens_mito -------------------........AG....................................G. AP012092.1_Lythrurus_fumeus_mito -------------------........AG....................................G. AP012093.1_Lythrurus_lirus_mitoc -------------------........AG....................................G. AP012094.1_Lythrurus_umbratilis_ -------------------........AG....................................G. AP012095.1_Macrhybopsis_meeki_mi -------------------........AG...................................... AP012097.1_Notropis_bifrenatus_m -------------------........AG....................................G. AP012098.1_Pimephales_sp._MCZunc -------------------........AG....................................G. AP012100.1_Notropis_telescopus_m TTTTGACCCCGCGCCCGAG........AG....................................G. AP012101.1_Pimephales_notatus_mi -------------------........AG....................................G. AP012102.1_Pimephales_vigilax_mi -------------------........AG....................................G. AP012103.1_Pogonichthys_macrolep -------------------........AG...................................... AP012106.1_Richardsonius_balteat -------------------........AG...................................... AP012108.1_Notropis_chrosomus_mi -------------------........AG....................................G. AY216542.1_Lythrurus_umbratilus_ ------------------------------------------------------------------- Pimephales_vigilax_R1S2_________ -------------------........AG....................................G. Pimephales_vigilax_R1S3_________ -------------------........AG....................................G. DQ536429.1_Notropis_stramineus_m -------------------........AG....................................G. JX910141.1_Squaliobarbus_curricu -------------------...A..G..G...................................... KC351187.1_Squaliobarbus_curricu -------------------...A..G..G...................................... KT278765.1_Pimephales_promelas_m -------------------........AG...................................... KT289925.1_Pimephales_promelas_m -------------------........AG...................................... KT424924.1_Rhinichthys_osculus_m -------------------........AG......C............................... KU200257.1_Chanodichthys_ilishae -------------------................................................ MF972070.1_Siphateles_bicolor_mo -------------------.........G...................................... MG570407.1_Notropis_chalybaeus_v -------------------........AG....................................G. MG570408.1_Notropis_bifrenatus_v -------------------........AG....................................G. MG570413.1_Notropis_heterolepis_ -------------------.........G....................................G. MG570416.1_Rhinichthys_obtusus_v -------------------.........G...................................... MG570417.1_Rhinichthys_obtusus_v -------------------.........G...................................... MG570420.1_Pimephales_notatus_vo -------------------........AG....................................G. MG570443.1_Notropis_hudsonius_is -------------------.........G....................................G. MG570444.1_Rhinichthys_atratulus -------------------.........G...................................... MG570445.1_Rhinichthys_atratulus -------------------.........G...................................... MG570447.1_Luxilus_cornutus_isol -------------------........AG....................................G. MG570449.1_Luxilus_cornutus_isol -------------------........AG....................................G. MG570450.1_Pimephales_notatus_is -------------------........AG....................................G. MG570451.1_Notropis_bifrenatus_i -------------------........AG....................................G. MG570453.1_Exoglossum_maxillingu --------------------..A..G.AG......C............................... MG570454.1_Pimephales_promelas_i -------------------........AG...................................... MG570455.1_Notropis_atherinoides -------------------........AG....................................G. MG570456.1_Notropis_atherinoides -------------------........AG....................................G. MG570457.1_Pimephales_notatus_is -------------------........AG....................................G. MG570458.1_Pimephales_notatus_is -------------------........AG....................................G. MK421554.1_Parabramis_pekinensis -------------------................................................ MT333789.1_Notropis_lutipinnis_v -------------------........AG....................................G. MT364325.1_Hybognathus_amarus_mi -------------------........AG....................................G. MT501368.1_Gila_cypha_isolate_SN -------------------................................................ MT501369.1_Notropis_simus_pecose -------------------..............................................G. MT501378.1_Hybognathus_amarus_is -------------------........AG....................................G. MT501385.1_Notropis_jemezanus_vo -------------------........AG....................................G. MT501391.1_Rhinichthys_osculus_i -------------------.........G......C............................... MT667239.1_Rhinichthys_osculus_t -------------------.........G......C............................... MT667242.1_Luxilus_cornutus_vouc -------------------........AG....................................G. MW300340.1_Hybognathus_placitus_ -------------------........AG....................................G. MW300341.1_Hybognathus_placitus_ -------------------........AG....................................G. NC_013763.1_Mylocheilus_caurinus -------------------........AG...................................... NC_033926.1_Opsopoeodus_emiliae_ -------------------........AG........C............................. NC_037008.1_Notropis_chalybaeus_ -------------------........AG....................................G. NC_037009.1_Notropis_heterolepis -------------------.........G....................................G. NC_037010.1_Rhinichthys_obtusus_ -------------------.........G...................................... NC_037014.1_Notropis_hudsonius_i -------------------.........G....................................G. NC_037015.1_Exoglossum_maxilling --------------------..A..G.AG......C............................... NC_054086.1_Ptychocheilus_lucius -------------------................................................ NC_054257.1_Gila_cypha_isolate_S -------------------................................................ NC_054259.1_Gila_nigrescens_isol -------------------................................................ NC_054260.1_Hybognathus_amarus_i -------------------........AG....................................G. NC_054262.1_Notropis_jemezanus_v -------------------........AG....................................G. Pimephales_notatus_R2S3_________ ------------------------------------------------------------------- Pimephales_tenellus_tenellu_R2S1 -------------------........AG....................................G. Pimephales_tenellus_parvice_R2S2 -------------------........AG....................................G. Pimephales_notatus_R1S1_________ -------------------........AG....................................G. MG570452.1_Pimephales_promelas_i -------------------........AG...................................... MG570452.1_Pimephales_promelas_S -------------------........AG...................................... ; end; begin mrbayes; exclude 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120 2830 2831 2832 2833 2834 2835 2836 2837 2838 2839 2840 2841 2842 2843 2844 2845 2846 2847 2848 2849 2850 2851 2852 2853 2854 2855 2856 2857 2858 2859 2860 2861 2862 2863 2864 2865 2866 2867 2868 2869 2870 2871 2872 2873 2874 2875 2876 2877 2878 2879 2880 2881 2882 2883 2884 2885 2886 2887 2888 2889 2890 2891 2892 2893 2894 2895 2896 2897 2898 2899 2900 2901 2902 2903 2904 2905 2906 2907 2908 2909 3865 3866 3867 3868 3869 3870 3871 3872 3873 3874 3875 3876 3877 3878 3879 3880 3881 3882 3883 3884 3885 3886 3887 3888 3889 3890 3891 3892 3893 3894 3895 3896 3897 3898 3899 3900 3901 3902 3903 3904 3905 3906 3907 3908 3909 3910 3911 3912 3913 3914 3915 3916 3917 3918 3919 3920 3921 3922 3923 3924 3925 3926 3927 3928 3929 3930 3931 3932 3933 3934 3935 3936 3937 3938 3939 3940 3941 3942 3943 3944 3945 3946 3947 3948 3949 3950 3951 3952 3953 3954 3955 3956 3957 3958 3959 3960 3961 3962 3963 3964 3965 3966 3967 3968 3969 3970 3971 3972 3973 3974 3975 3976 3977 3978 3979 3980 3981 3982 3983 3984 3985 3986 3987 3988 3989 3990 3991 3992 3993 3994 3995 3996 3997 3998 3999 4000 4001 4002 4003 4004 4005 4006 4007 4008 4009 4010 4011 4012 4013 4014 4015 4016 4017 4018 4019 4020 4021 4022 4023 4024 4025 4026 4027 4028 4029 4030 4031 4032 4033 4034 4035 4036 4037 4038 4039 4040 4041 4042 4043 4044 4045 4046 4047 4048 4049 4050 4051 4052 4053 4054 4055 4056 4057 4058 4059 4060 4061 4062 4063 4064 4065 4066 4067 4068 4069 4070 4071 4072 4073 4074 4075 4076 4077 4078 4079 4080 4081 4082 4083 4084 5127 5128 5129 5130 5131 5132 5133 5134 5135 5136 5137 5138 5139 5140 5141 5142 5143 5144 5145 5146 5147 5148 5149 5151 5152 5153 5154 5155 5156 5157 5158 5159 5160 5161 5162 5163 5164 5165 5166 5167 5168 5169 5170 5171 5172 5173 5174 5175 5176 5177 5178 5179 5180 5181 5182 5183 5184 5185 5186 5187 5188 5189 5190 5191 5192 5193 5194 5195 5196 5197 5198 5199 5200 5201 5202 5203 5205 5206 5207 5208 5209 5210 5211 5212 5213 5214 5215 5216 5217 5218 5219 5220 5221 5222 5223 5224 5225 5226 5227 5228 5229 5230 5231 5232 5233 5234 5235 5236 5237 5238 5239 5240 5241 5242 5243 5244 5245 5246 5247 5248 5249 5250 5251 5252 5253 5254 5255 5256 5257 5258 5259 5260 5261 5262 5263 5264 5265 5266 5267 5268 5269 5270 5271 5272 5273 5274 5275 5276 5277 5278 5279 5280 5281 5282 5283 5284 5285 5286 5287 5288 5289 5290 5291 5292 5293 5294 5295 5296 5297 5298 5299 5300 5301 5302 5303 5304 5305 5306 5307 5308 5309 5310 5311 5312 5313 5314 5315 5316 5317 5318 5319 5320 5321 5322 5323 5324 5325 5326 5327 5328 5329 5330 5331 5332 5333 5334 5335 5336 5337 5338 5339 5340 5341 5342 5343 5344 5345 5346 5347 5348 5350 5351 5352 5353 5354 5355 5356 5357 5358 5359 5360 5361 5363 5364 5365 5366 5367 5368 5369 5370 5371 5372 5373 5374 5375 5376 5377 5378 5380 5381 5382 5383 5384 5385 5386 5387 5388 5389 5390 5391 5392 5393 5394 5395 5396 5397 5398 5399 5400 5401 5402 5403 5404 5405 5406 5407 5408 5409 5410 5411 5412 5413 5414 5415 5416 5417 5418 5419 5420 5421 5422 5423 5424 5425 5426 5427 5428 5429 5430 5431 5432 5433 5434 5435 5436 5437 5438 5439 5440 5441 5442 5443 5445 5446 5447 5448 5449 5450 5453 5454 5455 5456 5457 5458 5459 5460 5461 5462 5463 5464 5465 5466 5467 5468 5469 5470 5471 5472 5473 5474 5475 5476 5477 5478 5479 5480 5481 5482 5483 5484 5485 5486 5487 5488 5489 5490 5491 5492 5493 5494 5495 5496 5497 5498 5499 5500 5501 5502 5503 5504 5505 5506 5507 5508 5509 5510 5511 5512 5513 5514 5515 5516 5517 5518 5519 5520 5521 5522 5523 5524 5525 5526 5527 5528 5529 7067 7068 7069 7070 7071 7072 7073 7074 7075 7076 7077 7078 7079 7080 7081 7082 7083 7084 7085 7086 7087 7088 7089 7090 7091 7092 7093 7094 7095 7096 7097 7098 7099 7100 7101 7102 7103 7104 7105 7106 7107 7108 7109 7110 7111 7112 7113 7114 7115 7116 7117 7118 7119 7120 7121 7122 7123 7124 7125 7126 7127 7128 7129 7130 7131 7132 7133 7134 7135 7136 7137 7138 7139 7140 7141 7142 7143 7144 7145 7146 7147 7148 7149 7154 7155 7156 7157 7158 7159 7160 7161 7162 7163 7164 7165 7166 7167 7168 7169 7170 7171 7172 7173 7174 7175 7176 7177 7178 7179 7180 7181 7182 7183 7184 7185 7186 7187 7188 7189 7190 7191 7192 7193 7194 7195 7196 7197 7198 7199 7200 7201 7202 7203 7204 7205 7206 7207 7208 7209 7210 7211 7212 7213 7214 7215 7216 7217 7218 7219 7220 7221 7222 7223 7224 7225 7226 7227 7228 7236 7238 7239 7240 7926 7927 7928 7929 7930 7931 7932 7933 7934 7935 7936 7937 7938 7939 7940 7941 7942 7943 7944 7945 7946 7947 7948 7949 7950 7951 7952 7953 7954 7955 7956 7957 7958 7959 7960 7961 7962 7963 7964 7965 7966 7967 7968 7969 7970 7971 7972 7973 7974 7975 7976 7977 7978 7979 7980 7981 7982 7983 7984 7985 7986 7987 7988 7989 7990 7991 7992 7993 7994 7995 7996 7997 7998 7999 8000 8001 8002 8003 8004 8005 8006 8007 8008 8849 9634 9636 9637 9638 9639 9640 9641 9642 9643 9644 9645 9646 9647 9648 9649 9650 9651 9652 9653 9654 9655 9656 9657 9658 9659 9660 9661 9662 9663 9664 9665 9666 9667 9668 9669 9670 9671 9672 9673 9674 9675 9676 9677 9678 9679 9680 9681 9682 9683 9684 9685 9686 9687 9688 9689 9690 9691 9692 9693 9694 9695 9696 9697 9698 9699 9700 9701 9702 9703 9704 9705 9706 10056 10057 10058 10059 10060 10062 10063 10064 10065 10066 10067 10068 10069 10070 10072 10073 10074 10075 10076 10077 10078 10079 10080 10081 10082 10083 10084 10085 10086 10087 10088 10089 10090 10091 10092 10093 10094 10095 10096 10097 10098 10099 10100 10101 10102 10103 10104 10105 10106 10107 10108 10109 10110 10111 10112 10113 10114 10115 10116 10117 10118 10119 10120 10122 10123 10124 10125 10126 10127 11793 11794 11795 11796 11797 11798 11799 11801 11802 11803 11804 11805 11806 11807 11808 11809 11810 11811 11812 11813 11814 11815 11816 11817 11818 11819 11820 11821 11822 11823 11824 11825 11826 11827 11828 11829 11830 11831 11832 11833 11834 11835 11836 11837 11838 11839 11840 11841 11842 11843 11844 11845 11846 11847 11848 11849 11850 11851 11852 11853 11854 11855 11856 11857 11858 11859 11860 11861 11862 11863 11864 11865 11866 11867 11868 11869 11870 11871 11872 11873 11874 11875 11876 11877 11878 11879 11880 11881 11882 11883 11884 11885 11886 11887 11888 11889 11890 11891 11892 11893 11894 11895 11896 11897 11898 11899 11900 11901 11902 11903 11904 11905 11906 11907 11908 11909 11910 11911 11912 11913 11914 11915 11916 11917 11918 11919 11920 11921 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14415 14416 14417 14418 14422 14423 14424 14425 14426 14427 14428 14429 14430 14431 14432 14433 14434 14435 14436 14437 14438 14439 14440 14442 14443 15579 15580 15581 15582 15583 15584 15585 15586 15587 15588 15589 15590 15591 15592 15593 15594 15595 15596 15597 15598 15599 15600 15602 15603 15604 15605 15606 15607 15608 15609 15610 15611 15612 15613 15614 15615 15616 15617 15618 15619 15620 15621 15622 15623 15624 15625 15626 15627 15628 15629 15630 15631 15632 15633 15634 15635 15636 15637 15638 15639 15640 15641 15642 15643 15644 15645 15646 15647 15648 15649 15650 15651 15652 15653 15654 15655 15656 15657 15780 15781 15782 15783 15784 15785 15786 15787 15788 15789 15790 15791 15792 15793 15794 15795 15796 15797 15798 15799 15800 15801 15802 15803 15804 15805 15806 15807 15808 15809 15810 15811 15812 15813 15814 15815 15816 15817 15818 15819 15820 15821 15822 15823 15824 15825 15826 15827 291 292 364 389 390 391 392 393 448 945 1036 1160 1165 1179 1231 1415 1538 1553 1565 1573 1574 1636 1754 1924 1953 1981 1985 1986 2068 2069 2070 2300 2345 2411 2479 2778 5150 5204 5349 5362 5379 5444 5451 5452 7150 7151 7152 7153 7229 7230 7231 7232 7233 7234 7235 7237 9635 10061 10071 10121 11800 14419 14420 14421 14441 15601 15658 15659 15660 15661 15662 15663 15664 15665 15666 15667 15668 15669 15670 15671 15672 15673 15674 15675 15676 15677 15678 15679 15680 15681 15682 15683 15684 15685 15686 15687 15688 15689 15690 15691 15692 15693 15694 15695 15696 15697 15698 15699 15700 15701 15702 15703 15704 15705 15706 15707 15708 15709 15710 15711 15712 15713 15714 15715 15716 15717 15718 15719 15720 15721 15722 15723 15724 15725 15726 15727 15728 15729 15730 15731 15732 15733 15734 15735 15736 15737 15738 15739 15740 15741 15742 15743 15744 15745 15746 15747 15748 15749 15750 15751 15752 15753 15754 15755 15756 15757 15758 15759 15760 15761 15762 15763 15764 15765 15766 15767 15768 15769 15770 15771 15772 15773 15774 15775 15776 15777 15778 15779; partition five = 5:2910 2913 2916 2919 2922 2925 2928 2931 2934 2937 2940 2943 2946 2949 2952 2955 2958 2961 2964 2967 2970 2973 2976 2979 2982 2985 2988 2991 2994 2997 3000 3003 3006 3009 3012 3015 3018 3021 3024 3027 3030 3033 3036 3039 3042 3045 3048 3051 3054 3057 3060 3063 3066 3069 3072 3075 3078 3081 3084 3087 3090 3093 3096 3099 3102 3105 3108 3111 3114 3117 3120 3123 3126 3129 3132 3135 3138 3141 3144 3147 3150 3153 3156 3159 3162 3165 3168 3171 3174 3177 3180 3183 3186 3189 3192 3195 3198 3201 3204 3207 3210 3213 3216 3219 3222 3225 3228 3231 3234 3237 3240 3243 3246 3249 3252 3255 3258 3261 3264 3267 3270 3273 3276 3279 3282 3285 3288 3291 3294 3297 3300 3303 3306 3309 3312 3315 3318 3321 3324 3327 3330 3333 3336 3339 3342 3345 3348 3351 3354 3357 3360 3363 3366 3369 3372 3375 3378 3381 3384 3387 3390 3393 3396 3399 3402 3405 3408 3411 3414 3417 3420 3423 3426 3429 3432 3435 3438 3441 3444 3447 3450 3453 3456 3459 3462 3465 3468 3471 3474 3477 3480 3483 3486 3489 3492 3495 3498 3501 3504 3507 3510 3513 3516 3519 3522 3525 3528 3531 3534 3537 3540 3543 3546 3549 3552 3555 3558 3561 3564 3567 3570 3573 3576 3579 3582 3585 3588 3591 3594 3597 3600 3603 3606 3609 3612 3615 3618 3621 3624 3627 3630 3633 3636 3639 3642 3645 3648 3651 3654 3657 3660 3663 3666 3669 3672 3675 3678 3681 3684 3687 3690 3693 3696 3699 3702 3705 3708 3711 3714 3717 3720 3723 3726 3729 3732 3735 3738 3741 3744 3747 3750 3753 3756 3759 3762 3765 3768 3771 3774 3777 3780 3783 3786 3789 3792 3795 3798 3801 3804 3807 3810 3813 3816 3819 3822 3825 3828 3831 3834 3837 3840 3843 3846 3849 3852 3855 3858 3861 3864 4085 4088 4091 4094 4097 4100 4103 4106 4109 4112 4115 4118 4121 4124 4127 4130 4133 4136 4139 4142 4145 4148 4151 4154 4157 4160 4163 4166 4169 4172 4175 4178 4181 4184 4187 4190 4193 4196 4199 4202 4205 4208 4211 4214 4217 4220 4223 4226 4229 4232 4235 4238 4241 4244 4247 4250 4253 4256 4259 4262 4265 4268 4271 4274 4277 4280 4283 4286 4289 4292 4295 4298 4301 4304 4307 4310 4313 4316 4319 4322 4325 4328 4331 4334 4337 4340 4343 4346 4349 4352 4355 4358 4361 4364 4367 4370 4373 4376 4379 4382 4385 4388 4391 4394 4397 4400 4403 4406 4409 4412 4415 4418 4421 4424 4427 4430 4433 4436 4439 4442 4445 4448 4451 4454 4457 4460 4463 4466 4469 4472 4475 4478 4481 4484 4487 4490 4493 4496 4499 4502 4505 4508 4511 4514 4517 4520 4523 4526 4529 4532 4535 4538 4541 4544 4547 4550 4553 4556 4559 4562 4565 4568 4571 4574 4577 4580 4583 4586 4589 4592 4595 4598 4601 4604 4607 4610 4613 4616 4619 4622 4625 4628 4631 4634 4637 4640 4643 4646 4649 4652 4655 4658 4661 4664 4667 4670 4673 4676 4679 4682 4685 4688 4691 4694 4697 4700 4703 4706 4709 4712 4715 4718 4721 4724 4727 4730 4733 4736 4739 4742 4745 4748 4751 4754 4757 4760 4763 4766 4769 4772 4775 4778 4781 4784 4787 4790 4793 4796 4799 4802 4805 4808 4811 4814 4817 4820 4823 4826 4829 4832 4835 4838 4841 4844 4847 4850 4853 4856 4859 4862 4865 4868 4871 4874 4877 4880 4883 4886 4889 4892 4895 4898 4901 4904 4907 4910 4913 4916 4919 4922 4925 4928 4931 4934 4937 4940 4943 4946 4949 4952 4955 4958 4961 4964 4967 4970 4973 4976 4979 4982 4985 4988 4991 4994 4997 5000 5003 5006 5009 5012 5015 5018 5021 5024 5027 5030 5033 5036 5039 5042 5045 5048 5051 5054 5057 5060 5063 5066 5069 5072 5075 5078 5081 5084 5087 5090 5093 5096 5099 5102 5105 5108 5111 5114 5117 5120 5123 5126 5530 5533 5536 5539 5542 5545 5548 5551 5554 5557 5560 5563 5566 5569 5572 5575 5578 5581 5584 5587 5590 5593 5596 5599 5602 5605 5608 5611 5614 5617 5620 5623 5626 5629 5632 5635 5638 5641 5644 5647 5650 5653 5656 5659 5662 5665 5668 5671 5674 5677 5680 5683 5686 5689 5692 5695 5698 5701 5704 5707 5710 5713 5716 5719 5722 5725 5728 5731 5734 5737 5740 5743 5746 5749 5752 5755 5758 5761 5764 5767 5770 5773 5776 5779 5782 5785 5788 5791 5794 5797 5800 5803 5806 5809 5812 5815 5818 5821 5824 5827 5830 5833 5836 5839 5842 5845 5848 5851 5854 5857 5860 5863 5866 5869 5872 5875 5878 5881 5884 5887 5890 5893 5896 5899 5902 5905 5908 5911 5914 5917 5920 5923 5926 5929 5932 5935 5938 5941 5944 5947 5950 5953 5956 5959 5962 5965 5968 5971 5974 5977 5980 5983 5986 5989 5992 5995 5998 6001 6004 6007 6010 6013 6016 6019 6022 6025 6028 6031 6034 6037 6040 6043 6046 6049 6052 6055 6058 6061 6064 6067 6070 6073 6076 6079 6082 6085 6088 6091 6094 6097 6100 6103 6106 6109 6112 6115 6118 6121 6124 6127 6130 6133 6136 6139 6142 6145 6148 6151 6154 6157 6160 6163 6166 6169 6172 6175 6178 6181 6184 6187 6190 6193 6196 6199 6202 6205 6208 6211 6214 6217 6220 6223 6226 6229 6232 6235 6238 6241 6244 6247 6250 6253 6256 6259 6262 6265 6268 6271 6274 6277 6280 6283 6286 6289 6292 6295 6298 6301 6304 6307 6310 6313 6316 6319 6322 6325 6328 6331 6334 6337 6340 6343 6346 6349 6352 6355 6358 6361 6364 6367 6370 6373 6376 6379 6382 6385 6388 6391 6394 6397 6400 6403 6406 6409 6412 6415 6418 6421 6424 6427 6430 6433 6436 6439 6442 6445 6448 6451 6454 6457 6460 6463 6466 6469 6472 6475 6478 6481 6484 6487 6490 6493 6496 6499 6502 6505 6508 6511 6514 6517 6520 6523 6526 6529 6532 6535 6538 6541 6544 6547 6550 6553 6556 6559 6562 6565 6568 6571 6574 6577 6580 6583 6586 6589 6592 6595 6598 6601 6604 6607 6610 6613 6616 6619 6622 6625 6628 6631 6634 6637 6640 6643 6646 6649 6652 6655 6658 6661 6664 6667 6670 6673 6676 6679 6682 6685 6688 6691 6694 6697 6700 6703 6706 6709 6712 6715 6718 6721 6724 6727 6730 6733 6736 6739 6742 6745 6748 6751 6754 6757 6760 6763 6766 6769 6772 6775 6778 6781 6784 6787 6790 6793 6796 6799 6802 6805 6808 6811 6814 6817 6820 6823 6826 6829 6832 6835 6838 6841 6844 6847 6850 6853 6856 6859 6862 6865 6868 6871 6874 6877 6880 6883 6886 6889 6892 6895 6898 6901 6904 6907 6910 6913 6916 6919 6922 6925 6928 6931 6934 6937 6940 6943 6946 6949 6952 6955 6958 6961 6964 6967 6970 6973 6976 6979 6982 6985 6988 6991 6994 6997 7000 7003 7006 7009 7012 7015 7018 7021 7024 7027 7030 7033 7036 7039 7042 7045 7048 7051 7054 7057 7060 7063 7066 7241 7244 7247 7250 7253 7256 7259 7262 7265 7268 7271 7274 7277 7280 7283 7286 7289 7292 7295 7298 7301 7304 7307 7310 7313 7316 7319 7322 7325 7328 7331 7334 7337 7340 7343 7346 7349 7352 7355 7358 7361 7364 7367 7370 7373 7376 7379 7382 7385 7388 7391 7394 7397 7400 7403 7406 7409 7412 7415 7418 7421 7424 7427 7430 7433 7436 7439 7442 7445 7448 7451 7454 7457 7460 7463 7466 7469 7472 7475 7478 7481 7484 7487 7490 7493 7496 7499 7502 7505 7508 7511 7514 7517 7520 7523 7526 7529 7532 7535 7538 7541 7544 7547 7550 7553 7556 7559 7562 7565 7568 7571 7574 7577 7580 7583 7586 7589 7592 7595 7598 7601 7604 7607 7610 7613 7616 7619 7622 7625 7628 7631 7634 7637 7640 7643 7646 7649 7652 7655 7658 7661 7664 7667 7670 7673 7676 7679 7682 7685 7688 7691 7694 7697 7700 7703 7706 7709 7712 7715 7718 7721 7724 7727 7730 7733 7736 7739 7742 7745 7748 7751 7754 7757 7760 7763 7766 7769 7772 7775 7778 7781 7784 7787 7790 7793 7796 7799 7802 7805 7808 7811 7814 7817 7820 7823 7826 7829 7832 7835 7838 7841 7844 7847 7850 7853 7856 7859 7862 7865 7868 7871 7874 7877 7880 7883 7886 7889 7892 7895 7898 7901 7904 7907 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15508 15511 15514 15517 15520 15523 15526 15529 15532 15535 15538 15541 15544 15547 15550 15553 15556 15559 15562 15565 15568 15571 15574 15577 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120 2830 2831 2832 2833 2834 2835 2836 2837 2838 2839 2840 2841 2842 2843 2844 2845 2846 2847 2848 2849 2850 2851 2852 2853 2854 2855 2856 2857 2858 2859 2860 2861 2862 2863 2864 2865 2866 2867 2868 2869 2870 2871 2872 2873 2874 2875 2876 2877 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5277 5278 5279 5280 5281 5282 5283 5284 5285 5286 5287 5288 5289 5290 5291 5292 5293 5294 5295 5296 5297 5298 5299 5300 5301 5302 5303 5304 5305 5306 5307 5308 5309 5310 5311 5312 5313 5314 5315 5316 5317 5318 5319 5320 5321 5322 5323 5324 5325 5326 5327 5328 5329 5330 5331 5332 5333 5334 5335 5336 5337 5338 5339 5340 5341 5342 5343 5344 5345 5346 5347 5348 5350 5351 5352 5353 5354 5355 5356 5357 5358 5359 5360 5361 5363 5364 5365 5366 5367 5368 5369 5370 5371 5372 5373 5374 5375 5376 5377 5378 5380 5381 5382 5383 5384 5385 5386 5387 5388 5389 5390 5391 5392 5393 5394 5395 5396 5397 5398 5399 5400 5401 5402 5403 5404 5405 5406 5407 5408 5409 5410 5411 5412 5413 5414 5415 5416 5417 5418 5419 5420 5421 5422 5423 5424 5425 5426 5427 5428 5429 5430 5431 5432 5433 5434 5435 5436 5437 5438 5439 5440 5441 5442 5443 5445 5446 5447 5448 5449 5450 5453 5454 5455 5456 5457 5458 5459 5460 5461 5462 5463 5464 5465 5466 5467 5468 5469 5470 5471 5472 5473 5474 5475 5476 5477 5478 5479 5480 5481 5482 5483 5484 5485 5486 5487 5488 5489 5490 5491 5492 5493 5494 5495 5496 5497 5498 5499 5500 5501 5502 5503 5504 5505 5506 5507 5508 5509 5510 5511 5512 5513 5514 5515 5516 5517 5518 5519 5520 5521 5522 5523 5524 5525 5526 5527 5528 5529 7067 7068 7069 7070 7071 7072 7073 7074 7075 7076 7077 7078 7079 7080 7081 7082 7083 7084 7085 7086 7087 7088 7089 7090 7091 7092 7093 7094 7095 7096 7097 7098 7099 7100 7101 7102 7103 7104 7105 7106 7107 7108 7109 7110 7111 7112 7113 7114 7115 7116 7117 7118 7119 7120 7121 7122 7123 7124 7125 7126 7127 7128 7129 7130 7131 7132 7133 7134 7135 7136 7137 7138 7139 7140 7141 7142 7143 7144 7145 7146 7147 7148 7149 7154 7155 7156 7157 7158 7159 7160 7161 7162 7163 7164 7165 7166 7167 7168 7169 7170 7171 7172 7173 7174 7175 7176 7177 7178 7179 7180 7181 7182 7183 7184 7185 7186 7187 7188 7189 7190 7191 7192 7193 7194 7195 7196 7197 7198 7199 7200 7201 7202 7203 7204 7205 7206 7207 7208 7209 7210 7211 7212 7213 7214 7215 7216 7217 7218 7219 7220 7221 7222 7223 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10087 10088 10089 10090 10091 10092 10093 10094 10095 10096 10097 10098 10099 10100 10101 10102 10103 10104 10105 10106 10107 10108 10109 10110 10111 10112 10113 10114 10115 10116 10117 10118 10119 10120 10122 10123 10124 10125 10126 10127 11793 11794 11795 11796 11797 11798 11799 11801 11802 11803 11804 11805 11806 11807 11808 11809 11810 11811 11812 11813 11814 11815 11816 11817 11818 11819 11820 11821 11822 11823 11824 11825 11826 11827 11828 11829 11830 11831 11832 11833 11834 11835 11836 11837 11838 11839 11840 11841 11842 11843 11844 11845 11846 11847 11848 11849 11850 11851 11852 11853 11854 11855 11856 11857 11858 11859 11860 11861 11862 11863 11864 11865 11866 11867 11868 11869 11870 11871 11872 11873 11874 11875 11876 11877 11878 11879 11880 11881 11882 11883 11884 11885 11886 11887 11888 11889 11890 11891 11892 11893 11894 11895 11896 11897 11898 11899 11900 11901 11902 11903 11904 11905 11906 11907 11908 11909 11910 11911 11912 11913 11914 11915 11916 11917 11918 11919 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14413 14414 14415 14416 14417 14418 14422 14423 14424 14425 14426 14427 14428 14429 14430 14431 14432 14433 14434 14435 14436 14437 14438 14439 14440 14442 14443 15579 15580 15581 15582 15583 15584 15585 15586 15587 15588 15589 15590 15591 15592 15593 15594 15595 15596 15597 15598 15599 15600 15602 15603 15604 15605 15606 15607 15608 15609 15610 15611 15612 15613 15614 15615 15616 15617 15618 15619 15620 15621 15622 15623 15624 15625 15626 15627 15628 15629 15630 15631 15632 15633 15634 15635 15636 15637 15638 15639 15640 15641 15642 15643 15644 15645 15646 15647 15648 15649 15650 15651 15652 15653 15654 15655 15656 15657 15780 15781 15782 15783 15784 15785 15786 15787 15788 15789 15790 15791 15792 15793 15794 15795 15796 15797 15798 15799 15800 15801 15802 15803 15804 15805 15806 15807 15808 15809 15810 15811 15812 15813 15814 15815 15816 15817 15818 15819 15820 15821 15822 15823 15824 15825 15826 15827 291 292 364 389 390 391 392 393 448 945 1036 1160 1165 1179 1231 1415 1538 1553 1565 1573 1574 1636 1754 1924 1953 1981 1985 1986 2068 2069 2070 2300 2345 2411 2479 2778 5150 5204 5349 5362 5379 5444 5451 5452 7150 7151 7152 7153 7229 7230 7231 7232 7233 7234 7235 7237 9635 10061 10071 10121 11800 14419 14420 14421 14441 15601 15658 15659 15660 15661 15662 15663 15664 15665 15666 15667 15668 15669 15670 15671 15672 15673 15674 15675 15676 15677 15678 15679 15680 15681 15682 15683 15684 15685 15686 15687 15688 15689 15690 15691 15692 15693 15694 15695 15696 15697 15698 15699 15700 15701 15702 15703 15704 15705 15706 15707 15708 15709 15710 15711 15712 15713 15714 15715 15716 15717 15718 15719 15720 15721 15722 15723 15724 15725 15726 15727 15728 15729 15730 15731 15732 15733 15734 15735 15736 15737 15738 15739 15740 15741 15742 15743 15744 15745 15746 15747 15748 15749 15750 15751 15752 15753 15754 15755 15756 15757 15758 15759 15760 15761 15762 15763 15764 15765 15766 15767 15768 15769 15770 15771 15772 15773 15774 15775 15776 15777 15778 15779; set partition = five; lset app=(all) rates=invgamma nst=6; end; ################### OUTPUT FILE ####################### #NEXUS begin taxa; dimensions ntax=92; taxlabels AB626850.1_Megalobrama_terminali AP010779.1_Mylocheilus_caurinus_ AP011215.1_Gila_sp._1460_mitocho AP011263.1_Scardinius_erythropht AP011267.1_Algansea_lacustris_mi AP011268.1_Yuriria_alta_mitochon AP011273.1_Hybognathus_nuchalis_ AP011274.1_Couesius_plumbeus_mit AP011275.1_Platygobio_gracilis_m AP011277.1_Erimystax_dissimilis_ AP011279.1_Pimephales_promelas_m AP011280.1_Clinostomus_elongatus AP012079.1_Luxilus_chrysocephalu AP012080.1_Macrhybopsis_gelida_m AP012083.1_Notropis_atherinoides AP012084.1_Notropis_baileyi_mito AP012087.1_Cyprinella_galactura_ AP012088.1_Hybopsis_lineapunctat AP012090.1_Luxilus_cornutus_mito AP012091.1_Lythrurus_ardens_mito AP012092.1_Lythrurus_fumeus_mito AP012093.1_Lythrurus_lirus_mitoc AP012094.1_Lythrurus_umbratilis_ AP012095.1_Macrhybopsis_meeki_mi AP012097.1_Notropis_bifrenatus_m AP012098.1_Pimephales_sp._MCZunc AP012100.1_Notropis_telescopus_m AP012101.1_Pimephales_notatus_mi AP012102.1_Pimephales_vigilax_mi AP012103.1_Pogonichthys_macrolep AP012106.1_Richardsonius_balteat AP012108.1_Notropis_chrosomus_mi AY216542.1_Lythrurus_umbratilus_ Pimephales_vigilax_R1S2_________ Pimephales_vigilax_R1S3_________ DQ536429.1_Notropis_stramineus_m JX910141.1_Squaliobarbus_curricu KC351187.1_Squaliobarbus_curricu KT278765.1_Pimephales_promelas_m KT289925.1_Pimephales_promelas_m KT424924.1_Rhinichthys_osculus_m KU200257.1_Chanodichthys_ilishae MF972070.1_Siphateles_bicolor_mo MG570407.1_Notropis_chalybaeus_v MG570408.1_Notropis_bifrenatus_v MG570413.1_Notropis_heterolepis_ MG570416.1_Rhinichthys_obtusus_v MG570417.1_Rhinichthys_obtusus_v MG570420.1_Pimephales_notatus_vo MG570443.1_Notropis_hudsonius_is MG570444.1_Rhinichthys_atratulus MG570445.1_Rhinichthys_atratulus MG570447.1_Luxilus_cornutus_isol MG570449.1_Luxilus_cornutus_isol MG570450.1_Pimephales_notatus_is MG570451.1_Notropis_bifrenatus_i MG570453.1_Exoglossum_maxillingu MG570454.1_Pimephales_promelas_i MG570455.1_Notropis_atherinoides MG570456.1_Notropis_atherinoides MG570457.1_Pimephales_notatus_is MG570458.1_Pimephales_notatus_is MK421554.1_Parabramis_pekinensis MT333789.1_Notropis_lutipinnis_v MT364325.1_Hybognathus_amarus_mi MT501368.1_Gila_cypha_isolate_SN MT501369.1_Notropis_simus_pecose MT501378.1_Hybognathus_amarus_is MT501385.1_Notropis_jemezanus_vo MT501391.1_Rhinichthys_osculus_i MT667239.1_Rhinichthys_osculus_t MT667242.1_Luxilus_cornutus_vouc MW300340.1_Hybognathus_placitus_ MW300341.1_Hybognathus_placitus_ NC_013763.1_Mylocheilus_caurinus NC_033926.1_Opsopoeodus_emiliae_ NC_037008.1_Notropis_chalybaeus_ NC_037009.1_Notropis_heterolepis NC_037010.1_Rhinichthys_obtusus_ NC_037014.1_Notropis_hudsonius_i NC_037015.1_Exoglossum_maxilling NC_054086.1_Ptychocheilus_lucius NC_054257.1_Gila_cypha_isolate_S NC_054259.1_Gila_nigrescens_isol NC_054260.1_Hybognathus_amarus_i NC_054262.1_Notropis_jemezanus_v Pimephales_notatus_R2S3_________ Pimephales_tenellus_tenellu_R2S1 Pimephales_tenellus_parvice_R2S2 Pimephales_notatus_R1S1_________ MG570452.1_Pimephales_promelas_i MG570452.1_Pimephales_promelas_S ; end; begin trees; translate 1 AB626850.1_Megalobrama_terminali, 2 AP010779.1_Mylocheilus_caurinus_, 3 AP011215.1_Gila_sp._1460_mitocho, 4 AP011263.1_Scardinius_erythropht, 5 AP011267.1_Algansea_lacustris_mi, 6 AP011268.1_Yuriria_alta_mitochon, 7 AP011273.1_Hybognathus_nuchalis_, 8 AP011274.1_Couesius_plumbeus_mit, 9 AP011275.1_Platygobio_gracilis_m, 10 AP011277.1_Erimystax_dissimilis_, 11 AP011279.1_Pimephales_promelas_m, 12 AP011280.1_Clinostomus_elongatus, 13 AP012079.1_Luxilus_chrysocephalu, 14 AP012080.1_Macrhybopsis_gelida_m, 15 AP012083.1_Notropis_atherinoides, 16 AP012084.1_Notropis_baileyi_mito, 17 AP012087.1_Cyprinella_galactura_, 18 AP012088.1_Hybopsis_lineapunctat, 19 AP012090.1_Luxilus_cornutus_mito, 20 AP012091.1_Lythrurus_ardens_mito, 21 AP012092.1_Lythrurus_fumeus_mito, 22 AP012093.1_Lythrurus_lirus_mitoc, 23 AP012094.1_Lythrurus_umbratilis_, 24 AP012095.1_Macrhybopsis_meeki_mi, 25 AP012097.1_Notropis_bifrenatus_m, 26 AP012098.1_Pimephales_sp._MCZunc, 27 AP012100.1_Notropis_telescopus_m, 28 AP012101.1_Pimephales_notatus_mi, 29 AP012102.1_Pimephales_vigilax_mi, 30 AP012103.1_Pogonichthys_macrolep, 31 AP012106.1_Richardsonius_balteat, 32 AP012108.1_Notropis_chrosomus_mi, 33 AY216542.1_Lythrurus_umbratilus_, 34 Pimephales_vigilax_R1S2_________, 35 Pimephales_vigilax_R1S3_________, 36 DQ536429.1_Notropis_stramineus_m, 37 JX910141.1_Squaliobarbus_curricu, 38 KC351187.1_Squaliobarbus_curricu, 39 KT278765.1_Pimephales_promelas_m, 40 KT289925.1_Pimephales_promelas_m, 41 KT424924.1_Rhinichthys_osculus_m, 42 KU200257.1_Chanodichthys_ilishae, 43 MF972070.1_Siphateles_bicolor_mo, 44 MG570407.1_Notropis_chalybaeus_v, 45 MG570408.1_Notropis_bifrenatus_v, 46 MG570413.1_Notropis_heterolepis_, 47 MG570416.1_Rhinichthys_obtusus_v, 48 MG570417.1_Rhinichthys_obtusus_v, 49 MG570420.1_Pimephales_notatus_vo, 50 MG570443.1_Notropis_hudsonius_is, 51 MG570444.1_Rhinichthys_atratulus, 52 MG570445.1_Rhinichthys_atratulus, 53 MG570447.1_Luxilus_cornutus_isol, 54 MG570449.1_Luxilus_cornutus_isol, 55 MG570450.1_Pimephales_notatus_is, 56 MG570451.1_Notropis_bifrenatus_i, 57 MG570453.1_Exoglossum_maxillingu, 58 MG570454.1_Pimephales_promelas_i, 59 MG570455.1_Notropis_atherinoides, 60 MG570456.1_Notropis_atherinoides, 61 MG570457.1_Pimephales_notatus_is, 62 MG570458.1_Pimephales_notatus_is, 63 MK421554.1_Parabramis_pekinensis, 64 MT333789.1_Notropis_lutipinnis_v, 65 MT364325.1_Hybognathus_amarus_mi, 66 MT501368.1_Gila_cypha_isolate_SN, 67 MT501369.1_Notropis_simus_pecose, 68 MT501378.1_Hybognathus_amarus_is, 69 MT501385.1_Notropis_jemezanus_vo, 70 MT501391.1_Rhinichthys_osculus_i, 71 MT667239.1_Rhinichthys_osculus_t, 72 MT667242.1_Luxilus_cornutus_vouc, 73 MW300340.1_Hybognathus_placitus_, 74 MW300341.1_Hybognathus_placitus_, 75 NC_013763.1_Mylocheilus_caurinus, 76 NC_033926.1_Opsopoeodus_emiliae_, 77 NC_037008.1_Notropis_chalybaeus_, 78 NC_037009.1_Notropis_heterolepis, 79 NC_037010.1_Rhinichthys_obtusus_, 80 NC_037014.1_Notropis_hudsonius_i, 81 NC_037015.1_Exoglossum_maxilling, 82 NC_054086.1_Ptychocheilus_lucius, 83 NC_054257.1_Gila_cypha_isolate_S, 84 NC_054259.1_Gila_nigrescens_isol, 85 NC_054260.1_Hybognathus_amarus_i, 86 NC_054262.1_Notropis_jemezanus_v, 87 Pimephales_notatus_R2S3_________, 88 Pimephales_tenellus_tenellu_R2S1, 89 Pimephales_tenellus_parvice_R2S2, 90 Pimephales_notatus_R1S1_________, 91 MG570452.1_Pimephales_promelas_i, 92 MG570452.1_Pimephales_promelas_S ; tree con_50_majrule = [&U] 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end;