Information for 5-CAGAAGG (Motif 8)


Reverse Opposite:

p-value:1e-480
log p-value:-1.105e+03
Information Content per bp:1.699
Number of Target Sequences with motif22501.0
Percentage of Target Sequences with motif26.03%
Number of Background Sequences with motif143552.0
Percentage of Background Sequences with motif19.11%
Average Position of motif in Targets174.8 +/- 163.0bp
Average Position of motif in Background130.7 +/- 170.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-1237 MIMAT0005592 Homo sapiens miR-1237 Targets (miRBase)

Match Rank:1
Score:0.79
Offset:-13
Orientation:forward strand
Alignment:-------------CAGAAGG-
CTGGGGGACGGAGCAGAAGGA

hsa-miR-3154 MIMAT0015028 Homo sapiens miR-3154 Targets (miRBase)

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CAGAAGG---------------
CAGAAGGGGAGTTGGGAGCAGA

hsa-miR-4724-3p MIMAT0019842 Homo sapiens miR-4724-3p Targets (miRBase)

Match Rank:3
Score:0.70
Offset:-11
Orientation:forward strand
Alignment:-----------CAGAAGG---
ACTAGCTGAACCAGAAGGTAC

hsa-miR-3127-3p MIMAT0019201 Homo sapiens miR-3127-3p Targets (miRBase)

Match Rank:4
Score:0.69
Offset:-12
Orientation:forward strand
Alignment:------------CAGAAGG---
CCAGCAGGCCTGCAGAAGGGGA

hsa-miR-4493 MIMAT0019028 Homo sapiens miR-4493 Targets (miRBase)

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CAGAAGG---------------
-AGAAGGCCTTTCCATCTCTGT

hsa-miR-3179 MIMAT0015056 Homo sapiens miR-3179 Targets (miRBase)

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CAGAAGG----------------
-AGAAGGGGTGAAATTTAAACGT

hsa-miR-1252 MIMAT0005944 Homo sapiens miR-1252 Targets (miRBase)

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CAGAAGG----------------
-AGAAGGAAATTGAATTCATTTA

hsa-miR-4516 MIMAT0019053 Homo sapiens miR-4516 Targets (miRBase)

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAGAAGG--------
GGGAGAAGGGTCGGGGC

hsa-miR-4297 MIMAT0016846 Homo sapiens miR-4297 Targets (miRBase)

Match Rank:9
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------CAGAAGG--
CACAGACAGGAAGGCA

hsa-miR-3182 MIMAT0015062 Homo sapiens miR-3182 Targets (miRBase)

Match Rank:10
Score:0.65
Offset:-10
Orientation:forward strand
Alignment:----------CAGAAGG
GACTACACTACAGAAGC