Information for 1-TTTTRGGGG (Motif 1)


Reverse Opposite:

p-value:1e-961
log p-value:-2.214e+03
Information Content per bp:1.591
Number of Target Sequences with motif34272.0
Percentage of Target Sequences with motif39.65%
Number of Background Sequences with motif214030.1
Percentage of Background Sequences with motif28.49%
Average Position of motif in Targets169.6 +/- 156.0bp
Average Position of motif in Background134.1 +/- 159.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.45
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4278 MIMAT0016910 Homo sapiens miR-4278 Targets (miRBase)

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTTTRGGGG----------
-CTAGGGGGTTTGCCCTTG

hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275 Targets (miRBase)

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TTTTRGGGG----------
--GTGGGGGAGAGGCTGTC

hsa-miR-4447 MIMAT0018966 Homo sapiens miR-4447 Targets (miRBase)

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTTTRGGGG---------
-GGTGGGGGCTGTTGTTT

hsa-miR-4472 MIMAT0018999 Homo sapiens miR-4472 Targets (miRBase)

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTTTRGGGG----------
-GGTGGGGGGTGTTGTTTT

hsa-miR-4665-5p MIMAT0019739 Homo sapiens miR-4665-5p Targets (miRBase)

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTTTRGGGG----------------
--CTGGGGGACGCGTGAGCGCGAGC

hsa-miR-3936 MIMAT0018351 Homo sapiens miR-3936 Targets (miRBase)

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTTTRGGGG---------------
--TAAGGGGTGTATGGCAGATGCA

hsa-miR-135a* MIMAT0004595 Homo sapiens miR-135a* Targets (miRBase)

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTTTRGGGG--------------
-TATAGGGATTGGAGCCGTGGCG

hsa-miR-2110 MIMAT0010133 Homo sapiens miR-2110 Targets (miRBase)

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TTTTRGGGG---------------
--TTGGGGAAACGGCCGCTGAGTG

hsa-miR-3162-5p MIMAT0015036 Homo sapiens miR-3162-5p Targets (miRBase)

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TTTTRGGGG----------------
--TTAGGGAGTAGAAGGGTGGGGAG

hsa-miR-18b* MIMAT0004751 Homo sapiens miR-18b* Targets (miRBase)

Match Rank:10
Score:0.58
Offset:-12
Orientation:forward strand
Alignment:------------TTTTRGGGG-
GCCAGAAGGGGCATTTAGGGCA