Information for 12-ACGAGAACGA (Motif 21)


Reverse Opposite:

p-value:1e-13
log p-value:-3.137e+01
Information Content per bp:1.838
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets27.6 +/- 21.8bp
Average Position of motif in Background35.9 +/- 8.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-2117 MIMAT0011162 Homo sapiens miR-2117 Targets (miRBase)

Match Rank:1
Score:0.63
Offset:-12
Orientation:forward strand
Alignment:------------ACGAGAACGA
CTGTCCTTGGCAAAGAGAACA-

hsa-miR-548ad MIMAT0018946 Homo sapiens miR-548ad Targets (miRBase)

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ACGAGAACGA--------------
--GAAAACGACAATGACTTTTGCA

hsa-miR-589 MIMAT0004799 Homo sapiens miR-589 Targets (miRBase)

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ACGAGAACGA-------------
-TGAGAACCACGTCTGCTCTGAG

hsa-miR-3925-5p MIMAT0018200 Homo sapiens miR-3925-5p Targets (miRBase)

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ACGAGAACGA------------
AAGAGAACTGAAAGTGGAGCCT

hsa-miR-578 MIMAT0003243 Homo sapiens miR-578 Targets (miRBase)

Match Rank:5
Score:0.59
Offset:-13
Orientation:forward strand
Alignment:-------------ACGAGAACGA
ACAATCCTAGAGCACAAGAAG--

hsa-miR-4681 MIMAT0019766 Homo sapiens miR-4681 Targets (miRBase)

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ACGAGAACGA-----------
AACGGGAATGCAGGCTGTATCT

hsa-miR-4273 MIMAT0016903 Homo sapiens miR-4273 Targets (miRBase)

Match Rank:7
Score:0.58
Offset:-8
Orientation:forward strand
Alignment:--------ACGAGAACGA
CTGTCCATCAGAGAACAC

hsa-miR-1237 MIMAT0005592 Homo sapiens miR-1237 Targets (miRBase)

Match Rank:8
Score:0.56
Offset:-11
Orientation:forward strand
Alignment:-----------ACGAGAACGA
CTGGGGGACGGAGCAGAAGGA

hsa-miR-146b-5p MIMAT0002809 Homo sapiens miR-146b-5p Targets (miRBase)

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ACGAGAACGA-------------
-TGAGAACTGAATTCCATAGGCT

hsa-miR-146a MIMAT0000449 Homo sapiens miR-146a Targets (miRBase)

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ACGAGAACGA-------------
-TGAGAACTGAATTCCATGGGTT