Information for 10-CAGCAGGCA (Motif 20)


Reverse Opposite:

p-value:1e-14
log p-value:-3.399e+01
Information Content per bp:1.911
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif234.2
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets34.9 +/- 23.3bp
Average Position of motif in Background27.2 +/- 19.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-3619-5p MIMAT0017999 Homo sapiens miR-3619-5p Targets (miRBase)

Match Rank:1
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CAGCAGGCA------------
TCAGCAGGCAGGCTGGTGCAGC

hsa-miR-214 MIMAT0000271 Homo sapiens miR-214 Targets (miRBase)

Match Rank:2
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CAGCAGGCA------------
ACAGCAGGCACAGACAGGCAGT

hsa-miR-370 MIMAT0000722 Homo sapiens miR-370 Targets (miRBase)

Match Rank:3
Score:0.80
Offset:-14
Orientation:forward strand
Alignment:--------------CAGCAGGCA
ACCAGGTTCCACCCCAGCAGGC-

hsa-miR-4291 MIMAT0016922 Homo sapiens miR-4291 Targets (miRBase)

Match Rank:4
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGGCA-----
TTCAGCAGGAACAGCT

hsa-miR-4288 MIMAT0016918 Homo sapiens miR-4288 Targets (miRBase)

Match Rank:5
Score:0.77
Offset:-7
Orientation:forward strand
Alignment:-------CAGCAGGCA-
GGAAACTCAGCAGACAA

hsa-miR-761 MIMAT0010364 Homo sapiens miR-761 Targets (miRBase)

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CAGCAGGCA------------
GCAGCAGGGTGAAACTGACACA

hsa-miR-4690-5p MIMAT0019779 Homo sapiens miR-4690-5p Targets (miRBase)

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CAGCAGGCA-------------
GAGCAGGCGAGGCTGGGCTGAA

hsa-miR-4530 MIMAT0019069 Homo sapiens miR-4530 Targets (miRBase)

Match Rank:8
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGGCA-------
CCCAGCAGGACGGGAGCG

hsa-miR-1911* MIMAT0007886 Homo sapiens miR-1911* Targets (miRBase)

Match Rank:9
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CAGCAGGCA-----------
CACCAGGCATTGTGGTCTCC

hsa-miR-3074-5p MIMAT0019208 Homo sapiens miR-3074-5p Targets (miRBase)

Match Rank:10
Score:0.70
Offset:-11
Orientation:forward strand
Alignment:-----------CAGCAGGCA-
CTGGCTCAGTTCAGCAGGAAC