Information for 3-GADGAAGAD (Motif 2)


Reverse Opposite:

p-value:1e-61
log p-value:-1.425e+02
Information Content per bp:1.658
Number of Target Sequences with motif1717.0
Percentage of Target Sequences with motif20.07%
Number of Background Sequences with motif9479.9
Percentage of Background Sequences with motif13.16%
Average Position of motif in Targets30.8 +/- 19.1bp
Average Position of motif in Background27.3 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4778-3p MIMAT0019937 Homo sapiens miR-4778-3p Targets (miRBase)

Match Rank:1
Score:0.73
Offset:-14
Orientation:forward strand
Alignment:--------------GADGAAGAD
TCAACTCTGCAAAGGAAGAAGA-

hsa-miR-877* MIMAT0004950 Homo sapiens miR-877* Targets (miRBase)

Match Rank:2
Score:0.68
Offset:-13
Orientation:forward strand
Alignment:-------------GADGAAGAD
CTGGGAGGAGGGAGAAGAGGA-

hsa-miR-1253 MIMAT0005904 Homo sapiens miR-1253 Targets (miRBase)

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GADGAAGAD---------
AGAGAAGAAGATCAGCCTGCA

hsa-miR-3916 MIMAT0018190 Homo sapiens miR-3916 Targets (miRBase)

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GADGAAGAD---------------
AAGAGGAAGAAATGGCTGGTTCTCAG

hsa-miR-1272 MIMAT0005925 Homo sapiens miR-1272 Targets (miRBase)

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GADGAAGAD-----------------
GATGATGATGGCAGCAAATTCTGAAA

hsa-miR-4268 MIMAT0016896 Homo sapiens miR-4268 Targets (miRBase)

Match Rank:6
Score:0.63
Offset:-10
Orientation:forward strand
Alignment:----------GADGAAGAD--
CACATCCTGAGAGGAGGAGCC

hsa-miR-1236 MIMAT0005591 Homo sapiens miR-1236 Targets (miRBase)

Match Rank:7
Score:0.63
Offset:-12
Orientation:forward strand
Alignment:------------GADGAAGAD-
CTGGAGAGACAAGGGGAAGAGG

hsa-miR-3185 MIMAT0015065 Homo sapiens miR-3185 Targets (miRBase)

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GADGAAGAD-------------
AGAAGAAGGCGGTCGGTCTGCGG

hsa-miR-4659b-3p MIMAT0019734 Homo sapiens miR-4659b-3p Targets (miRBase)

Match Rank:9
Score:0.62
Offset:-12
Orientation:forward strand
Alignment:------------GADGAAGAD-
AGCTGCCATGTCTAAGAAGAAA

hsa-miR-4659a-3p MIMAT0019727 Homo sapiens miR-4659a-3p Targets (miRBase)

Match Rank:10
Score:0.62
Offset:-12
Orientation:forward strand
Alignment:------------GADGAAGAD-
CGTTGCCATGTCTAAGAAGAAA