Information for 9-ATCGGC (Motif 26)


Reverse Opposite:

p-value:1e-182
log p-value:-4.197e+02
Information Content per bp:1.958
Number of Target Sequences with motif23361.0
Percentage of Target Sequences with motif28.95%
Number of Background Sequences with motif174792.8
Percentage of Background Sequences with motif24.26%
Average Position of motif in Targets148.4 +/- 165.9bp
Average Position of motif in Background129.8 +/- 140.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4485 MIMAT0019019 Homo sapiens miR-4485 Targets (miRBase)

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATCGGC-------------
TAACGGCCGCGGTACCCTAA

hsa-miR-4537 MIMAT0019080 Homo sapiens miR-4537 Targets (miRBase)

Match Rank:2
Score:0.64
Offset:-13
Orientation:forward strand
Alignment:-------------ATCGGC---
CAGCTAAGCTCAGCTCGGCTCA

hsa-miR-1469 MIMAT0007347 Homo sapiens miR-1469 Targets (miRBase)

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATCGGC----------------
CTCGGCGCGGGGCGCGGGCTCC

hsa-miR-337-5p MIMAT0004695 Homo sapiens miR-337-5p Targets (miRBase)

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATCGGC--------------
GAACGGCTTCATACAGGAGTT

hsa-miR-3610 MIMAT0017987 Homo sapiens miR-3610 Targets (miRBase)

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ATCGGC------------
GAATCGGAAAGGAGGCGCCG

hsa-miR-4665-3p MIMAT0019740 Homo sapiens miR-4665-3p Targets (miRBase)

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATCGGC--------------------
CTCGGCCGCGGCGCGTAGCCCCCGCC

hsa-miR-4638-5p MIMAT0019695 Homo sapiens miR-4638-5p Targets (miRBase)

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATCGGC--------------
ACTCGGCTGCGGTGGACAAGT

hsa-miR-29c* MIMAT0004673 Homo sapiens miR-29c* Targets (miRBase)

Match Rank:8
Score:0.62
Offset:-14
Orientation:forward strand
Alignment:--------------ATCGGC--
GAACACCAGGAGAAATCGGTCA

hsa-miR-192* MIMAT0004543 Homo sapiens miR-192* Targets (miRBase)

Match Rank:9
Score:0.62
Offset:-14
Orientation:forward strand
Alignment:--------------ATCGGC--
CTGTGACCTATGGAATTGGCAG

hsa-miR-1307 MIMAT0005951 Homo sapiens miR-1307 Targets (miRBase)

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATCGGC---------------
ACTCGGCGTGGCGTCGGTCGTG