Information for 1-AGGTAAGT (Motif 1)


Reverse Opposite:

p-value:1e-186
log p-value:-4.302e+02
Information Content per bp:1.675
Number of Target Sequences with motif1739.0
Percentage of Target Sequences with motif20.33%
Number of Background Sequences with motif6600.1
Percentage of Background Sequences with motif9.16%
Average Position of motif in Targets30.3 +/- 17.7bp
Average Position of motif in Background28.1 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-548ag MIMAT0018969 Homo sapiens miR-548ag Targets (miRBase)

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AGGTAAGT-----------
AAAGGTAATTGTGGTTTCTGC

hsa-miR-548ai MIMAT0018989 Homo sapiens miR-548ai Targets (miRBase)

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AGGTAAGT------------
AAAGGTAATTGCAGTTTTTCCC

hsa-miR-555 MIMAT0003219 Homo sapiens miR-555 Targets (miRBase)

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AGGTAAGT------------
AGGGTAAGCTGAACCTCTGAT

hsa-miR-3124-3p MIMAT0019200 Homo sapiens miR-3124-3p Targets (miRBase)

Match Rank:4
Score:0.66
Offset:-14
Orientation:forward strand
Alignment:--------------AGGTAAGT
ACTTCACGGGAGTGAGGAAAGT

hsa-miR-125a-3p MIMAT0004602 Homo sapiens miR-125a-3p Targets (miRBase)

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGGTAAGT------------
ACAGGTGAGGTTCTTGGGAGCC

hsa-miR-4792 MIMAT0019964 Homo sapiens miR-4792 Targets (miRBase)

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGGTAAGT----------
CGGTGAGCGCTCGCTGGC

hsa-miR-4710 MIMAT0019815 Homo sapiens miR-4710 Targets (miRBase)

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGTAAGT----------
GGGTGAGGGCAGGTGGTT

hsa-miR-3650 MIMAT0018070 Homo sapiens miR-3650 Targets (miRBase)

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGGTAAGT-----------
AGGTGTGTCTGTAGAGTCC

hsa-miR-4458 MIMAT0018980 Homo sapiens miR-4458 Targets (miRBase)

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGGTAAGT---------
AGAGGTAGGTGTGGAAGAA

hsa-miR-4256 MIMAT0016877 Homo sapiens miR-4256 Targets (miRBase)

Match Rank:10
Score:0.62
Offset:-9
Orientation:forward strand
Alignment:---------AGGTAAGT-
ACCTTCATCAGGTCAGAT