Information for 11-CGGCATCGAG (Motif 18)


Reverse Opposite:

p-value:1e-17
log p-value:-3.995e+01
Information Content per bp:1.660
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif44.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets31.3 +/- 19.6bp
Average Position of motif in Background31.9 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-885-3p MIMAT0004948 Homo sapiens miR-885-3p Targets (miRBase)

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGGCATCGAG------------
AGGCAGCGGGGTGTAGTGGATA

hsa-miR-720 MIMAT0005954 Homo sapiens miR-720 Targets (miRBase)

Match Rank:2
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CGGCATCGAG-
TGGAGGCCCCAGCGAGA

hsa-miR-4642 MIMAT0019702 Homo sapiens miR-4642 Targets (miRBase)

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGGCATCGAG-----------
ATGGCATCGTCCCCTGGTGGCT

hsa-miR-638 MIMAT0003308 Homo sapiens miR-638 Targets (miRBase)

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGGCATCGAG---------------
AGGGATCGCGGGCGGGTGGCGGCCT

hsa-miR-639 MIMAT0003309 Homo sapiens miR-639 Targets (miRBase)

Match Rank:5
Score:0.60
Offset:-13
Orientation:forward strand
Alignment:-------------CGGCATCGAG
ACAGCGCTCGCAACCGCAGCGAT

hsa-miR-1256 MIMAT0005907 Homo sapiens miR-1256 Targets (miRBase)

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGGCATCGAG------------
AGGCATTGACTTCTCACTAGCT

hsa-miR-3622b-5p MIMAT0018005 Homo sapiens miR-3622b-5p Targets (miRBase)

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGGCATCGAG----------
AGGCATGGGAGGTCAGGTGA

hsa-miR-181a* MIMAT0000270 Homo sapiens miR-181a* Targets (miRBase)

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGCATCGAG-------------
-ACCATCGACCGTTGATTGTACC

hsa-miR-891a MIMAT0004902 Homo sapiens miR-891a Targets (miRBase)

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGCATCGAG-------------
-TGCAACGAACCTGAGCCACTGA

hsa-miR-4304 MIMAT0016854 Homo sapiens miR-4304 Targets (miRBase)

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CGGCATCGAG------
CCGGCATGTCCAGGGCA