Information for 4-CACACACACA (Motif 5)


Reverse Opposite:

p-value:1e-50
log p-value:-1.159e+02
Information Content per bp:1.652
Number of Target Sequences with motif292.0
Percentage of Target Sequences with motif3.41%
Number of Background Sequences with motif800.4
Percentage of Background Sequences with motif1.11%
Average Position of motif in Targets35.3 +/- 28.9bp
Average Position of motif in Background29.8 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.58
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-297 MIMAT0004450 Homo sapiens miR-297 Targets (miRBase)

Match Rank:1
Score:0.73
Offset:-10
Orientation:forward strand
Alignment:----------CACACACACA-
CATGCACATGCACACATACAT

hsa-miR-574-5p MIMAT0004795 Homo sapiens miR-574-5p Targets (miRBase)

Match Rank:2
Score:0.72
Offset:-13
Orientation:forward strand
Alignment:-------------CACACACACA
ACACACTCACACACACACACTCA

hsa-miR-4455 MIMAT0018977 Homo sapiens miR-4455 Targets (miRBase)

Match Rank:3
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CACACACACA--
AAAAACACACACACCCT

hsa-miR-210 MIMAT0000267 Homo sapiens miR-210 Targets (miRBase)

Match Rank:4
Score:0.71
Offset:-11
Orientation:forward strand
Alignment:-----------CACACACACA-
TCAGCCGCTGTCACACGCACAG

hsa-miR-3650 MIMAT0018070 Homo sapiens miR-3650 Targets (miRBase)

Match Rank:5
Score:0.71
Offset:-8
Orientation:forward strand
Alignment:--------CACACACACA-
GGACTCTACAGACACACCT

hsa-miR-147 MIMAT0000251 Homo sapiens miR-147 Targets (miRBase)

Match Rank:6
Score:0.67
Offset:-13
Orientation:forward strand
Alignment:-------------CACACACACA
GCAGAAGCATTTCCACACAC---

hsa-miR-4658 MIMAT0019725 Homo sapiens miR-4658 Targets (miRBase)

Match Rank:7
Score:0.67
Offset:-14
Orientation:forward strand
Alignment:--------------CACACACACA
ATTCCTCCAGGATCCACACTCAC-

hsa-miR-342-3p MIMAT0000753 Homo sapiens miR-342-3p Targets (miRBase)

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CACACACACA------------
TCTCACACAGAAATCGCACCCGT

hsa-miR-603 MIMAT0003271 Homo sapiens miR-603 Targets (miRBase)

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CACACACACA--------------
--CACACACTGCAATTACTTTTGC

hsa-miR-4789-3p MIMAT0019960 Homo sapiens miR-4789-3p Targets (miRBase)

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CACACACACA-------------
--CACACATAGCAGGTGTATATA