FastQCFastQC Report
Mon 16 Oct 2017
E743-input-2-mRNA_all.fq.clean_fq_reverse

Summary

[OK] Basic Statistics

Measure Value
Filename E743-input-2-mRNA_all.fq.clean_fq_reverse
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 38611163
Sequence length 16-147
%GC 45

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[WARN] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[WARN] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TGTGTGCCTAATACATGCATGTTGAACGGGATGTAGCAATACATTCAGTA 89743 0.23242760131312284 No Hit
CTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTG 74379 0.19263600011219553 No Hit
GTGGGCGTTGGAATATTGATGAGAGCTGCTCTTAGTACGAGAGGACCGGA 54910 0.14221275852271015 No Hit
GGCCGGTGTTCTTCAGGATCTGCTTGCTCACCATGGTTGTGGCCATTATC 48680 0.12607752840804096 No Hit
GATTCGAAGTGAGAATCTTCGACGCCTATTGGGAAAGGTTTCCTGGGCAA 45389 0.11755408662515554 No Hit
ACGGTGAAGAGACATGAGAGGTGTAGAATAAGTGGGAGGCCCCCGGCGCC 40079 0.10380158712132033 No Hit

[OK] Kmer Content

No overrepresented Kmers