Information for 1-NAGGTAAGT (Motif 1)


Reverse Opposite:

p-value:1e-220
log p-value:-5.089e+02
Information Content per bp:1.601
Number of Target Sequences with motif1359.0
Percentage of Target Sequences with motif14.14%
Number of Background Sequences with motif3923.7
Percentage of Background Sequences with motif4.92%
Average Position of motif in Targets32.1 +/- 21.6bp
Average Position of motif in Background27.4 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-555 MIMAT0003219 Homo sapiens miR-555 Targets (miRBase)

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:NAGGTAAGT------------
AGGGTAAGCTGAACCTCTGAT

hsa-miR-548ag MIMAT0018969 Homo sapiens miR-548ag Targets (miRBase)

Match Rank:2
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-NAGGTAAGT-----------
AAAGGTAATTGTGGTTTCTGC

hsa-miR-548ai MIMAT0018989 Homo sapiens miR-548ai Targets (miRBase)

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-NAGGTAAGT------------
AAAGGTAATTGCAGTTTTTCCC

hsa-miR-4458 MIMAT0018980 Homo sapiens miR-4458 Targets (miRBase)

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-NAGGTAAGT---------
AGAGGTAGGTGTGGAAGAA

hsa-miR-4490 MIMAT0019025 Homo sapiens miR-4490 Targets (miRBase)

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-NAGGTAAGT------------
TCTGGTAAGAGATTTGGGCATA

hsa-miR-331-5p MIMAT0004700 Homo sapiens miR-331-5p Targets (miRBase)

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-NAGGTAAGT------------
CTAGGTATGGTCCCAGGGATCC

hsa-miR-4792 MIMAT0019964 Homo sapiens miR-4792 Targets (miRBase)

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:NAGGTAAGT----------
-CGGTGAGCGCTCGCTGGC

hsa-miR-200a* MIMAT0001620 Homo sapiens miR-200a* Targets (miRBase)

Match Rank:8
Score:0.64
Offset:-11
Orientation:forward strand
Alignment:-----------NAGGTAAGT--
TCCAGCACTGTCCGGTAAGATG

hsa-miR-200c* MIMAT0004657 Homo sapiens miR-200c* Targets (miRBase)

Match Rank:9
Score:0.64
Offset:-11
Orientation:forward strand
Alignment:-----------NAGGTAAGT--
CCAAACACTGCTGGGTAAGACG

hsa-miR-125a-3p MIMAT0004602 Homo sapiens miR-125a-3p Targets (miRBase)

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-NAGGTAAGT------------
ACAGGTGAGGTTCTTGGGAGCC