Information for 13-GTCATCAAGC (Motif 17)


Reverse Opposite:

p-value:1e-11
log p-value:-2.710e+01
Information Content per bp:1.809
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif38.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets24.2 +/- 12.9bp
Average Position of motif in Background31.1 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-3913-3p MIMAT0019225 Homo sapiens miR-3913-3p Targets (miRBase)

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTCATCAAGC-----------
AGACATCAAGATCAGTCCCAAA

hsa-miR-1287 MIMAT0005878 Homo sapiens miR-1287 Targets (miRBase)

Match Rank:2
Score:0.63
Offset:-11
Orientation:forward strand
Alignment:-----------GTCATCAAGC-
GACTCGAACCACTGATCCAGCA

hsa-miR-1273e MIMAT0018079 Homo sapiens miR-1273e Targets (miRBase)

Match Rank:3
Score:0.62
Offset:-10
Orientation:forward strand
Alignment:----------GTCATCAAGC--
TCCACTTCCTGGGTTCAAGCAA

hsa-miR-4635 MIMAT0019692 Homo sapiens miR-4635 Targets (miRBase)

Match Rank:4
Score:0.60
Offset:-11
Orientation:forward strand
Alignment:-----------GTCATCAAGC
TTGCGGGTTCTGACTTCAAGA

hsa-miR-551b* MIMAT0004794 Homo sapiens miR-551b* Targets (miRBase)

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTCATCAAGC------------
GAAATCAAGCGTGGGTGAGACC

hsa-miR-498 MIMAT0002824 Homo sapiens miR-498 Targets (miRBase)

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GTCATCAAGC---------------
--TTTCAAGCCAGGGGGCGTTTTTC

hsa-miR-1224-5p MIMAT0005458 Homo sapiens miR-1224-5p Targets (miRBase)

Match Rank:7
Score:0.56
Offset:-11
Orientation:forward strand
Alignment:-----------GTCATCAAGC
CCACCTCCCGAGTCCTCAC--

hsa-miR-628-5p MIMAT0004809 Homo sapiens miR-628-5p Targets (miRBase)

Match Rank:8
Score:0.55
Offset:-14
Orientation:forward strand
Alignment:--------------GTCATCAAGC
CCTCTAGTAAATATGTCAGCAT--

hsa-miR-432* MIMAT0002815 Homo sapiens miR-432* Targets (miRBase)

Match Rank:9
Score:0.55
Offset:-12
Orientation:forward strand
Alignment:------------GTCATCAAGC
AGACATGGAGGAGCCATCCAG-

hsa-miR-4777-5p MIMAT0019934 Homo sapiens miR-4777-5p Targets (miRBase)

Match Rank:10
Score:0.54
Offset:-11
Orientation:forward strand
Alignment:-----------GTCATCAAGC-
TATATATATCTCTCATCTAGAA