Information for 1-GKGGTAGG (Motif 3)


Reverse Opposite:

p-value:1e-772
log p-value:-1.778e+03
Information Content per bp:1.646
Number of Target Sequences with motif38020.0
Percentage of Target Sequences with motif43.99%
Number of Background Sequences with motif252834.1
Percentage of Background Sequences with motif33.65%
Average Position of motif in Targets169.9 +/- 161.4bp
Average Position of motif in Background133.3 +/- 166.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.71
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-3162-3p MIMAT0019213 Homo sapiens miR-3162-3p Targets (miRBase)

Match Rank:1
Score:0.74
Offset:-11
Orientation:forward strand
Alignment:-----------GKGGTAGG--
TGGGGAGTGGAGGGGTAGGGA

hsa-miR-4458 MIMAT0018980 Homo sapiens miR-4458 Targets (miRBase)

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GKGGTAGG----------
AGAGGTAGGTGTGGAAGAA

hsa-miR-4536 MIMAT0019078 Homo sapiens miR-4536 Targets (miRBase)

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GKGGTAGG------------
TGTGGTAGATATATGCACGAT

hsa-let-7e MIMAT0000066 Homo sapiens let-7e Targets (miRBase)

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GKGGTAGG-------------
TGAGGTAGGAGGTTGTATAGTT

hsa-miR-3685 MIMAT0018113 Homo sapiens miR-3685 Targets (miRBase)

Match Rank:5
Score:0.63
Offset:-11
Orientation:forward strand
Alignment:-----------GKGGTAGG---
AGTCTTCAGGTAGGGTAGGAAA

hsa-miR-4500 MIMAT0019036 Homo sapiens miR-4500 Targets (miRBase)

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GKGGTAGG--------
TGAGGTAGTAGTTTCTT

hsa-miR-4725-3p MIMAT0019844 Homo sapiens miR-4725-3p Targets (miRBase)

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GKGGTAGG-------------
TGGGGAAGGCGTCAGTGTCGGG

hsa-miR-3190 MIMAT0015073 Homo sapiens miR-3190 Targets (miRBase)

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GKGGTAGG--------------
TGTGGAAGGTAGACGGCCAGAGA

hsa-miR-555 MIMAT0003219 Homo sapiens miR-555 Targets (miRBase)

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GKGGTAGG-------------
AGGGTAAGCTGAACCTCTGAT

hsa-let-7g MIMAT0000414 Homo sapiens let-7g Targets (miRBase)

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GKGGTAGG-------------
TGAGGTAGTAGTTTGTACAGTT