Information for 15-AGTCGGA (Motif 21)


Reverse Opposite:

p-value:1e-6
log p-value:-1.530e+01
Information Content per bp:1.944
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif111.7
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets30.4 +/- 16.7bp
Average Position of motif in Background28.2 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4785 MIMAT0019949 Homo sapiens miR-4785 Targets (miRBase)

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AGTCGGA------------
AGAGTCGGCGACGCCGCCAGC

hsa-miR-3610 MIMAT0017987 Homo sapiens miR-3610 Targets (miRBase)

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AGTCGGA------------
GAATCGGAAAGGAGGCGCCG

hsa-miR-3156-3p MIMAT0019209 Homo sapiens miR-3156-3p Targets (miRBase)

Match Rank:3
Score:0.68
Offset:-13
Orientation:forward strand
Alignment:-------------AGTCGGA-
AGAAAGATCTGGAAGTGGGAG

hsa-miR-4454 MIMAT0018976 Homo sapiens miR-4454 Targets (miRBase)

Match Rank:4
Score:0.63
Offset:-10
Orientation:forward strand
Alignment:----------AGTCGGA---
TGGTGCCGTGACTCGGATCC

hsa-miR-4431 MIMAT0018947 Homo sapiens miR-4431 Targets (miRBase)

Match Rank:5
Score:0.63
Offset:-16
Orientation:forward strand
Alignment:----------------AGTCGGA
ACCTTCTAGTTTTCAGAGTCGC-

hsa-miR-4529-3p MIMAT0019068 Homo sapiens miR-4529-3p Targets (miRBase)

Match Rank:6
Score:0.62
Offset:-13
Orientation:forward strand
Alignment:-------------AGTCGGA-
ACGGGCCATCAGCAGTCCAAT

hsa-miR-4301 MIMAT0016850 Homo sapiens miR-4301 Targets (miRBase)

Match Rank:7
Score:0.61
Offset:-13
Orientation:forward strand
Alignment:-------------AGTCGGA
TCACAAGTGAAGTAGTGGGA

hsa-miR-3917 MIMAT0018191 Homo sapiens miR-3917 Targets (miRBase)

Match Rank:8
Score:0.61
Offset:-11
Orientation:forward strand
Alignment:-----------AGTCGGA--
CCCACCTGCTCAGTCCGAGC

hsa-miR-25* MIMAT0004498 Homo sapiens miR-25* Targets (miRBase)

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGTCGGA--------------
AGGCGGAGACTTGGGCAATTG

hsa-miR-340* MIMAT0000750 Homo sapiens miR-340* Targets (miRBase)

Match Rank:10
Score:0.60
Offset:-15
Orientation:forward strand
Alignment:---------------AGTCGGA
GCTATAAAGTAACTGAGACGGA