Information for 11-KCGAGAG (Motif 12)


Reverse Opposite:

p-value:1e-15
log p-value:-3.579e+01
Information Content per bp:1.811
Number of Target Sequences with motif600.0
Percentage of Target Sequences with motif7.01%
Number of Background Sequences with motif3512.4
Percentage of Background Sequences with motif4.88%
Average Position of motif in Targets30.6 +/- 19.9bp
Average Position of motif in Background26.1 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-3615 MIMAT0017994 Homo sapiens miR-3615 Targets (miRBase)

Match Rank:1
Score:0.73
Offset:-13
Orientation:forward strand
Alignment:-------------KCGAGAG-
GAGCCGCGAGGAGCCGAGAGA

hsa-miR-4523 MIMAT0019061 Homo sapiens miR-4523 Targets (miRBase)

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--KCGAGAG------------
GACCGAGAGGGCCTCGGCTGT

hsa-miR-4740-3p MIMAT0019870 Homo sapiens miR-4740-3p Targets (miRBase)

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--KCGAGAG-------------
GCCCGAGAGGATCCGTCCCTGC

hsa-miR-516a-5p MIMAT0004770 Homo sapiens miR-516a-5p Targets (miRBase)

Match Rank:4
Score:0.65
Offset:-16
Orientation:forward strand
Alignment:----------------KCGAGAG
GAAAGTGCTTCTTTCCTCGAGAA

hsa-miR-720 MIMAT0005954 Homo sapiens miR-720 Targets (miRBase)

Match Rank:5
Score:0.64
Offset:-11
Orientation:forward strand
Alignment:-----------KCGAGAG
TGGAGGCCCCAGCGAGA-

hsa-miR-4798-3p MIMAT0019975 Homo sapiens miR-4798-3p Targets (miRBase)

Match Rank:6
Score:0.64
Offset:-13
Orientation:forward strand
Alignment:-------------KCGAGAG--
ACTTCGGTATACTTCGTGAGTT

hsa-miR-4639-3p MIMAT0019698 Homo sapiens miR-4639-3p Targets (miRBase)

Match Rank:7
Score:0.64
Offset:-10
Orientation:forward strand
Alignment:----------KCGAGAG---
GCAAAGCAAGGTGAGAGTGA

hsa-miR-1251 MIMAT0005903 Homo sapiens miR-1251 Targets (miRBase)

Match Rank:8
Score:0.62
Offset:-13
Orientation:forward strand
Alignment:-------------KCGAGAG-
AGCGCCTTTGGCAGCTAGAGT

hsa-miR-4306 MIMAT0016858 Homo sapiens miR-4306 Targets (miRBase)

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:KCGAGAG----------
TGGAGAGAAAGGCAGTA

hsa-miR-4693-3p MIMAT0019785 Homo sapiens miR-4693-3p Targets (miRBase)

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:KCGAGAG-----------------
-TGAGAGTGGAATTCACAGTATTT