Information for 2-ATCGGGAAGA (Motif 3)


Reverse Opposite:

p-value:1e-57
log p-value:-1.334e+02
Information Content per bp:1.537
Number of Target Sequences with motif804.0
Percentage of Target Sequences with motif9.40%
Number of Background Sequences with motif3519.2
Percentage of Background Sequences with motif4.89%
Average Position of motif in Targets29.5 +/- 15.8bp
Average Position of motif in Background28.2 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-425* MIMAT0001343 Homo sapiens miR-425* Targets (miRBase)

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ATCGGGAAGA------------
ATCGGGAATGTCGTGTCCGCCC

hsa-miR-1236 MIMAT0005591 Homo sapiens miR-1236 Targets (miRBase)

Match Rank:2
Score:0.70
Offset:-10
Orientation:forward strand
Alignment:----------ATCGGGAAGA--
CTGGAGAGACAAGGGGAAGAGG

hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271 Targets (miRBase)

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ATCGGGAAGA----------
-GGGGGAAGAAAAGGTGGGG

hsa-miR-141* MIMAT0004598 Homo sapiens miR-141* Targets (miRBase)

Match Rank:4
Score:0.64
Offset:-10
Orientation:forward strand
Alignment:----------ATCGGGAAGA--
TCCAACACTGTACTGGAAGATG

hsa-miR-3175 MIMAT0015052 Homo sapiens miR-3175 Targets (miRBase)

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATCGGGAAGA--------------
--CGGGGAGAGAACGCAGTGACGT

hsa-miR-4725-3p MIMAT0019844 Homo sapiens miR-4725-3p Targets (miRBase)

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATCGGGAAGA-------------
-TGGGGAAGGCGTCAGTGTCGGG

hsa-miR-7 MIMAT0000252 Homo sapiens miR-7 Targets (miRBase)

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:ATCGGGAAGA----------------
---TGGAAGACTAGTGATTTTGTTGT

hsa-miR-3180-5p MIMAT0015057 Homo sapiens miR-3180-5p Targets (miRBase)

Match Rank:8
Score:0.60
Offset:-16
Orientation:forward strand
Alignment:----------------ATCGGGAAGA
CGACGTGGGGCGGAGCGTCTGGAAG-

hsa-miR-4747-5p MIMAT0019882 Homo sapiens miR-4747-5p Targets (miRBase)

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:ATCGGGAAGA--------------
--AGGGAAGGAGGCTTGGTCTTAG

hsa-miR-877* MIMAT0004950 Homo sapiens miR-877* Targets (miRBase)

Match Rank:10
Score:0.59
Offset:-8
Orientation:forward strand
Alignment:--------ATCGGGAAGA---
CTGGGAGGAGGGAGAAGAGGA