Information for 1-GAGAGRG (Motif 2)


Reverse Opposite:

p-value:1e-556
log p-value:-1.281e+03
Information Content per bp:1.480
Number of Target Sequences with motif28297.0
Percentage of Target Sequences with motif35.07%
Number of Background Sequences with motif191021.6
Percentage of Background Sequences with motif26.52%
Average Position of motif in Targets175.1 +/- 161.6bp
Average Position of motif in Background130.1 +/- 166.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.63
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-3183 MIMAT0015063 Homo sapiens miR-3183 Targets (miRBase)

Match Rank:1
Score:0.70
Offset:-13
Orientation:forward strand
Alignment:-------------GAGAGRG--
TCCGAGCGACTCCGAGAGAGGC

hsa-miR-642a MIMAT0003312 Homo sapiens miR-642a Targets (miRBase)

Match Rank:2
Score:0.70
Offset:-13
Orientation:forward strand
Alignment:-------------GAGAGRG--
CAAGACACATTTGGAGAGGGAC

hsa-miR-4639-3p MIMAT0019698 Homo sapiens miR-4639-3p Targets (miRBase)

Match Rank:3
Score:0.69
Offset:-12
Orientation:forward strand
Alignment:------------GAGAGRG-
GCAAAGCAAGGTGAGAGTGA

hsa-miR-4419a MIMAT0018931 Homo sapiens miR-4419a Targets (miRBase)

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGRG---------
TGAGGGAGGAGACTGCA

hsa-miR-4693-3p MIMAT0019785 Homo sapiens miR-4693-3p Targets (miRBase)

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGRG---------------
TGAGAGTGGAATTCACAGTATTT

hsa-miR-1273f MIMAT0020601 Homo sapiens miR-1273f Targets (miRBase)

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGRG-----------
GGAGATGGAGGTTGCAGTG

hsa-miR-4723-3p MIMAT0019839 Homo sapiens miR-4723-3p Targets (miRBase)

Match Rank:7
Score:0.66
Offset:-15
Orientation:forward strand
Alignment:---------------GAGAGRG
TTTGGGGAGGAGCCAGAGAGGG

hsa-miR-4644 MIMAT0019704 Homo sapiens miR-4644 Targets (miRBase)

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGRG--------------
TGGAGAGAGAAAAGAGACAGAAG

hsa-miR-4469 MIMAT0018996 Homo sapiens miR-4469 Targets (miRBase)

Match Rank:9
Score:0.65
Offset:-14
Orientation:forward strand
Alignment:--------------GAGAGRG-
TCCGAGCGACCCTAGAGGGAGC

hsa-miR-4510 MIMAT0019047 Homo sapiens miR-4510 Targets (miRBase)

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGRG--------------
TGAGGGAGTAGGATGTATGGTT