Information for 5-GCGTGGTGGC (Motif 6)


Reverse Opposite:

p-value:1e-376
log p-value:-8.675e+02
Information Content per bp:1.705
Number of Target Sequences with motif4394.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif18667.2
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets21.3 +/- 11.0bp
Average Position of motif in Background22.0 +/- 10.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4456 MIMAT0018978 Homo sapiens miR-4456 Targets (miRBase)

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GCGTGGTGGC--------
-CCTGGTGGCTTCCTTTT

hsa-miR-4701-5p MIMAT0019798 Homo sapiens miR-4701-5p Targets (miRBase)

Match Rank:2
Score:0.68
Offset:-9
Orientation:forward strand
Alignment:---------GCGTGGTGGC---
AAGGGGTAGGTGTGGTGGCCAA

hsa-miR-1268 MIMAT0005922 Homo sapiens miR-1268 Targets (miRBase)

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GCGTGGTGGC-----
CGGGCGTGGTGGTGGGGG

hsa-miR-1268b MIMAT0018925 Homo sapiens miR-1268b Targets (miRBase)

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCGTGGTGGC-------
CGGGCGTGGTGGTGGGGGTG

hsa-miR-1911* MIMAT0007886 Homo sapiens miR-1911* Targets (miRBase)

Match Rank:5
Score:0.65
Offset:-12
Orientation:forward strand
Alignment:------------GCGTGGTGGC
GGAGACCACAATGCCTGGTG--

hsa-miR-4733-3p MIMAT0019858 Homo sapiens miR-4733-3p Targets (miRBase)

Match Rank:6
Score:0.63
Offset:-13
Orientation:forward strand
Alignment:-------------GCGTGGTGGC
ATCCCAATGCTAGACCTGGTGG-

hsa-miR-876-3p MIMAT0004925 Homo sapiens miR-876-3p Targets (miRBase)

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCGTGGTGGC---------------
---TGGTGGTTTACAAAGTAATTCA

hsa-miR-4651 MIMAT0019715 Homo sapiens miR-4651 Targets (miRBase)

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCGTGGTGGC-----------
-CGGGGTGGGTGAGGTCGGGC

hsa-miR-4715-3p MIMAT0019825 Homo sapiens miR-4715-3p Targets (miRBase)

Match Rank:9
Score:0.61
Offset:-11
Orientation:forward strand
Alignment:-----------GCGTGGTGGC--
ATTGGCTGCAGTTAAGGTGGCAC

hsa-miR-4447 MIMAT0018966 Homo sapiens miR-4447 Targets (miRBase)

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCGTGGTGGC--------
-GGTGGGGGCTGTTGTTT