Information for 5-ATCGGCA (Motif 6)


Reverse Opposite:

p-value:1e-35
log p-value:-8.187e+01
Information Content per bp:1.781
Number of Target Sequences with motif693.0
Percentage of Target Sequences with motif7.21%
Number of Background Sequences with motif3348.7
Percentage of Background Sequences with motif4.20%
Average Position of motif in Targets30.6 +/- 19.8bp
Average Position of motif in Background28.0 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-425* MIMAT0001343 Homo sapiens miR-425* Targets (miRBase)

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:ATCGGCA---------------
ATCGGGAATGTCGTGTCCGCCC

hsa-miR-3610 MIMAT0017987 Homo sapiens miR-3610 Targets (miRBase)

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ATCGGCA-----------
GAATCGGAAAGGAGGCGCCG

hsa-miR-192* MIMAT0004543 Homo sapiens miR-192* Targets (miRBase)

Match Rank:3
Score:0.68
Offset:-14
Orientation:forward strand
Alignment:--------------ATCGGCA-
CTGTGACCTATGGAATTGGCAG

hsa-miR-4423-3p MIMAT0018936 Homo sapiens miR-4423-3p Targets (miRBase)

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATCGGCA--------------
ATAGGCACCAAAAAGCAACAA

hsa-miR-135a* MIMAT0004595 Homo sapiens miR-135a* Targets (miRBase)

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATCGGCA--------------
TATAGGGATTGGAGCCGTGGCG

hsa-miR-548al MIMAT0019024 Homo sapiens miR-548al Targets (miRBase)

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATCGGCA---------------
AACGGCAATGACTTTTGTACCA

hsa-miR-4304 MIMAT0016854 Homo sapiens miR-4304 Targets (miRBase)

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATCGGCA-----------
-CCGGCATGTCCAGGGCA

hsa-miR-4641 MIMAT0019701 Homo sapiens miR-4641 Targets (miRBase)

Match Rank:8
Score:0.60
Offset:-17
Orientation:forward strand
Alignment:-----------------ATCGGCA
TGAGGCAAAAGTATGGCATGGGCA

hsa-miR-191 MIMAT0000440 Homo sapiens miR-191 Targets (miRBase)

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ATCGGCA---------------
CAACGGAATCCCAAAAGCAGCTG

hsa-miR-4664-3p MIMAT0019738 Homo sapiens miR-4664-3p Targets (miRBase)

Match Rank:10
Score:0.59
Offset:-14
Orientation:forward strand
Alignment:--------------ATCGGCA-
GACGGGGCTCACAGACCGGAAG