Information for 3-NYCTTKCAGS (Motif 4)


Reverse Opposite:

p-value:1e-54
log p-value:-1.265e+02
Information Content per bp:1.553
Number of Target Sequences with motif852.0
Percentage of Target Sequences with motif9.96%
Number of Background Sequences with motif3889.8
Percentage of Background Sequences with motif5.40%
Average Position of motif in Targets25.2 +/- 16.0bp
Average Position of motif in Background28.8 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4766-5p MIMAT0019917 Homo sapiens miR-4766-5p Targets (miRBase)

Match Rank:1
Score:0.68
Offset:-11
Orientation:forward strand
Alignment:-----------NYCTTKCAGS
AACACCAACTGCTCTTTCAGA

hsa-miR-2276 MIMAT0011775 Homo sapiens miR-2276 Targets (miRBase)

Match Rank:2
Score:0.64
Offset:-12
Orientation:forward strand
Alignment:------------NYCTTKCAGS
CCTCGCCTCTGACACTTGCAGA

hsa-miR-1205 MIMAT0005869 Homo sapiens miR-1205 Targets (miRBase)

Match Rank:3
Score:0.63
Offset:-10
Orientation:forward strand
Alignment:----------NYCTTKCAGS
CTCAAAGCAAACCCTGCAGA

hsa-miR-4418 MIMAT0018930 Homo sapiens miR-4418 Targets (miRBase)

Match Rank:4
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------NYCTTKCAGS-
CTGCTGAGTCCTGCAGTG

hsa-miR-3158-5p MIMAT0019211 Homo sapiens miR-3158-5p Targets (miRBase)

Match Rank:5
Score:0.62
Offset:-11
Orientation:forward strand
Alignment:-----------NYCTTKCAGS
GAAGGGCTTCCTCTCTGCAGG

hsa-miR-30e* MIMAT0000693 Homo sapiens miR-30e* Targets (miRBase)

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:NYCTTKCAGS--------------
--CTTTCAGTCGGATGTTTACAGC

hsa-miR-30a* MIMAT0000088 Homo sapiens miR-30a* Targets (miRBase)

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:NYCTTKCAGS--------------
--CTTTCAGTCGGATGTTTGCAGC

hsa-miR-30d* MIMAT0004551 Homo sapiens miR-30d* Targets (miRBase)

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:NYCTTKCAGS--------------
--CTTTCAGTCAGATGTTTGCTGC

hsa-miR-187* MIMAT0004561 Homo sapiens miR-187* Targets (miRBase)

Match Rank:9
Score:0.61
Offset:-11
Orientation:forward strand
Alignment:-----------NYCTTKCAGS-
GCCCGGGTCCTGTGTTGTAGCC

hsa-miR-1184 MIMAT0005829 Homo sapiens miR-1184 Targets (miRBase)

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:NYCTTKCAGS---------------
--CCTGCAGCGACTTGATGGCTTCC