Information for 10-CGGTTCGA (Motif 11)


Reverse Opposite:

p-value:1e-28
log p-value:-6.539e+01
Information Content per bp:1.839
Number of Target Sequences with motif318.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif1247.6
Percentage of Background Sequences with motif1.56%
Average Position of motif in Targets32.7 +/- 25.1bp
Average Position of motif in Background29.0 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-126 MIMAT0000445 Homo sapiens miR-126 Targets (miRBase)

Match Rank:1
Score:0.63
Offset:-14
Orientation:forward strand
Alignment:--------------CGGTTCGA
CGCATTATTACTCACGGTACGA

hsa-miR-371-5p MIMAT0004687 Homo sapiens miR-371-5p Targets (miRBase)

Match Rank:2
Score:0.61
Offset:-10
Orientation:forward strand
Alignment:----------CGGTTCGA--
AGTGCCCCCACAGTTTGAGT

hsa-miR-369-5p MIMAT0001621 Homo sapiens miR-369-5p Targets (miRBase)

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGGTTCGA---------------
-AGATCGACCGTGTTATATTCGC

hsa-miR-3652 MIMAT0018072 Homo sapiens miR-3652 Targets (miRBase)

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGGTTCGA----------
CGGCTGGAGGTGTGAGGA

hsa-miR-363* MIMAT0003385 Homo sapiens miR-363* Targets (miRBase)

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGGTTCGA--------------
CGGGTGGATCACGATGCAATTT

hsa-miR-3917 MIMAT0018191 Homo sapiens miR-3917 Targets (miRBase)

Match Rank:6
Score:0.58
Offset:-10
Orientation:forward strand
Alignment:----------CGGTTCGA--
CCCACCTGCTCAGTCCGAGC

hsa-miR-671-3p MIMAT0004819 Homo sapiens miR-671-3p Targets (miRBase)

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGGTTCGA-----------
TCCGGTTCTCAGGGCTCCACC

hsa-miR-4534 MIMAT0019073 Homo sapiens miR-4534 Targets (miRBase)

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGTTCGA----------
-GGATGGAGGAGGGGTCT

hsa-miR-1280 MIMAT0005946 Homo sapiens miR-1280 Targets (miRBase)

Match Rank:9
Score:0.55
Offset:-9
Orientation:forward strand
Alignment:---------CGGTTCGA
GGGTGGCAGCGGTGGGA

hsa-miR-3927 MIMAT0018202 Homo sapiens miR-3927 Targets (miRBase)

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGGTTCGA--------------
CAGGTAGATATTTGATAGGCAT