Information for 9-TRKGG (Motif 23)


Reverse Opposite:

p-value:1e-11
log p-value:-2.699e+01
Information Content per bp:1.822
Number of Target Sequences with motif2231.0
Percentage of Target Sequences with motif23.21%
Number of Background Sequences with motif16068.3
Percentage of Background Sequences with motif20.14%
Average Position of motif in Targets30.0 +/- 19.8bp
Average Position of motif in Background28.1 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-3115 MIMAT0014977 Homo sapiens miR-3115 Targets (miRBase)

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TRKGG--------------
ATATGGGTTTACTAGTTGGT

hsa-miR-4296 MIMAT0016845 Homo sapiens miR-4296 Targets (miRBase)

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TRKGG-----------
ATGTGGGCTCAGGCTCA

hsa-miR-4318 MIMAT0016869 Homo sapiens miR-4318 Targets (miRBase)

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TRKGG---------
CACTGTGGGTACATGCT

hsa-miR-587 MIMAT0003253 Homo sapiens miR-587 Targets (miRBase)

Match Rank:4
Score:0.65
Offset:-13
Orientation:forward strand
Alignment:-------------TRKGG---
GTGACTCATCACCTATGGAAA

hsa-miR-4278 MIMAT0016910 Homo sapiens miR-4278 Targets (miRBase)

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TRKGG------------
CTAGGGGGTTTGCCCTTG

hsa-miR-584 MIMAT0003249 Homo sapiens miR-584 Targets (miRBase)

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TRKGG----------------
TTATGGTTTGCCTGGGACTGAG

hsa-miR-644 MIMAT0003314 Homo sapiens miR-644 Targets (miRBase)

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TRKGG------------
AGTGTGGCTTTCTTAGAGC

hsa-miR-4265 MIMAT0016891 Homo sapiens miR-4265 Targets (miRBase)

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TRKGG-------------
CTGTGGGCTCAGCTCTGGG

hsa-miR-147 MIMAT0000251 Homo sapiens miR-147 Targets (miRBase)

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TRKGG------------
GTGTGTGGAAATGCTTCTGC

hsa-miR-4286 MIMAT0016916 Homo sapiens miR-4286 Targets (miRBase)

Match Rank:10
Score:0.63
Offset:-11
Orientation:forward strand
Alignment:-----------TRKGG-
GGTACCAGGAGTGGGGT