Information for 13-TGRTGRTGAT (Motif 10)


Reverse Opposite:

p-value:1e-35
log p-value:-8.242e+01
Information Content per bp:1.459
Number of Target Sequences with motif274.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif797.0
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets20.2 +/- 9.1bp
Average Position of motif in Background20.8 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-1272 MIMAT0005925 Homo sapiens miR-1272 Targets (miRBase)

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TGRTGRTGAT-----------------
-GATGATGATGGCAGCAAATTCTGAAA

hsa-miR-4502 MIMAT0019038 Homo sapiens miR-4502 Targets (miRBase)

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGRTGRTGAT----------
GCTGATGATGATGGTGCTGAAG

hsa-miR-3682-3p MIMAT0018110 Homo sapiens miR-3682-3p Targets (miRBase)

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGRTGRTGAT--------------
---TGATGATACAGGTGGAGGTAG

hsa-miR-197 MIMAT0000227 Homo sapiens miR-197 Targets (miRBase)

Match Rank:4
Score:0.61
Offset:-12
Orientation:forward strand
Alignment:------------TGRTGRTGAT
GCTGGGTGGAGAAGGTGGTGAA

hsa-miR-3605-5p MIMAT0017981 Homo sapiens miR-3605-5p Targets (miRBase)

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGRTGRTGAT-------------
TGAGGATGGATAGCAAGGAAGCC

hsa-miR-136* MIMAT0004606 Homo sapiens miR-136* Targets (miRBase)

Match Rank:6
Score:0.59
Offset:-11
Orientation:forward strand
Alignment:-----------TGRTGRTGAT-
AGACTCATTTGAGACGATGATG

hsa-miR-3065-3p MIMAT0015378 Homo sapiens miR-3065-3p Targets (miRBase)

Match Rank:7
Score:0.59
Offset:-14
Orientation:forward strand
Alignment:--------------TGRTGRTGAT
CTCCAACAATATCCTGGTGCTGA-

hsa-miR-1322 MIMAT0005953 Homo sapiens miR-1322 Targets (miRBase)

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGRTGRTGAT----------
-GATGATGCTGCTGATGCTG

hsa-miR-4700-5p MIMAT0019796 Homo sapiens miR-4700-5p Targets (miRBase)

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGRTGRTGAT----------
TCTGGGGATGAGGACAGTGTGT

hsa-miR-21* MIMAT0004494 Homo sapiens miR-21* Targets (miRBase)

Match Rank:10
Score:0.57
Offset:-13
Orientation:forward strand
Alignment:-------------TGRTGRTGAT
ACAGCCCATCGACTGGTGTTG--