Information for 1-GRATGGRDDW (Motif 4)


Reverse Opposite:

p-value:1e-443
log p-value:-1.020e+03
Information Content per bp:1.514
Number of Target Sequences with motif44513.0
Percentage of Target Sequences with motif55.17%
Number of Background Sequences with motif337209.2
Percentage of Background Sequences with motif46.81%
Average Position of motif in Targets159.7 +/- 164.3bp
Average Position of motif in Background132.9 +/- 153.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.76
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4534 MIMAT0019073 Homo sapiens miR-4534 Targets (miRBase)

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GRATGGRDDW-------
GGATGGAGGAGGGGTCT

hsa-miR-2392 MIMAT0019043 Homo sapiens miR-2392 Targets (miRBase)

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GRATGGRDDW--------
TAGGATGGGGGTGAGAGGTG

hsa-miR-4531 MIMAT0019070 Homo sapiens miR-4531 Targets (miRBase)

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GRATGGRDDW---------
--ATGGAGAAGGCTTCTGA

hsa-miR-1246 MIMAT0005898 Homo sapiens miR-1246 Targets (miRBase)

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GRATGGRDDW----------
-AATGGATTTTTGGAGCAGG

hsa-miR-3652 MIMAT0018072 Homo sapiens miR-3652 Targets (miRBase)

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GRATGGRDDW-------
CGGCTGGAGGTGTGAGGA

hsa-miR-1261 MIMAT0005913 Homo sapiens miR-1261 Targets (miRBase)

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GRATGGRDDW-----------
--ATGGATAAGGCTTTGGCTT

hsa-miR-620 MIMAT0003289 Homo sapiens miR-620 Targets (miRBase)

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GRATGGRDDW------------
--ATGGAGATAGATATAGAAAT

hsa-miR-3134 MIMAT0015000 Homo sapiens miR-3134 Targets (miRBase)

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GRATGGRDDW-------------
TGATGGATAAAAGACTACATATT

hsa-miR-1193 MIMAT0015049 Homo sapiens miR-1193 Targets (miRBase)

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GRATGGRDDW------------
GGGATGGTAGACCGGTGACGTGC

hsa-miR-4691-5p MIMAT0019781 Homo sapiens miR-4691-5p Targets (miRBase)

Match Rank:10
Score:0.56
Offset:-12
Orientation:forward strand
Alignment:------------GRATGGRDDW-
CCGCAGCTCATGGCCTGGAGGAC