Information for 3-GAATGGA (Motif 12)


Reverse Opposite:

p-value:1e-251
log p-value:-5.794e+02
Information Content per bp:1.925
Number of Target Sequences with motif7813.0
Percentage of Target Sequences with motif2.73%
Number of Background Sequences with motif45649.7
Percentage of Background Sequences with motif1.77%
Average Position of motif in Targets22.1 +/- 10.2bp
Average Position of motif in Background20.6 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-136 MIMAT0000448 Homo sapiens miR-136 Targets (miRBase)

Match Rank:1
Score:0.70
Offset:-14
Orientation:forward strand
Alignment:--------------GAATGGA--
TCCATCATCAAAACAAATGGAGT

hsa-miR-4694-3p MIMAT0019787 Homo sapiens miR-4694-3p Targets (miRBase)

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GAATGGA-------------
CAAATGGACAGGATAACACCT

hsa-miR-4534 MIMAT0019073 Homo sapiens miR-4534 Targets (miRBase)

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GAATGGA----------
GGATGGAGGAGGGGTCT

hsa-miR-4790-3p MIMAT0019962 Homo sapiens miR-4790-3p Targets (miRBase)

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GAATGGA--------------
TGAATGGTAAAGCGATGTCACA

hsa-miR-1246 MIMAT0005898 Homo sapiens miR-1246 Targets (miRBase)

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GAATGGA-------------
-AATGGATTTTTGGAGCAGG

hsa-miR-3654 MIMAT0018074 Homo sapiens miR-3654 Targets (miRBase)

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAATGGA------------
GACTGGACAAGCTGAGGAA

hsa-miR-3673 MIMAT0018096 Homo sapiens miR-3673 Targets (miRBase)

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GAATGGA-----------
ATGGAATGTATATACGGAATA

hsa-miR-4515 MIMAT0019052 Homo sapiens miR-4515 Targets (miRBase)

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAATGGA-------------
AGGACTGGACTCCCGGCAGCCC

hsa-miR-4755-5p MIMAT0019895 Homo sapiens miR-4755-5p Targets (miRBase)

Match Rank:9
Score:0.61
Offset:-13
Orientation:forward strand
Alignment:-------------GAATGGA--
AAAGCCAGGCTCTGAAGGGAAA

hsa-miR-4685-3p MIMAT0019772 Homo sapiens miR-4685-3p Targets (miRBase)

Match Rank:10
Score:0.61
Offset:-13
Orientation:forward strand
Alignment:-------------GAATGGA--
CTAGCCAGGGCAGGAAGGGAGA