Information for 4-AATTAGCCGG (Motif 5)


Reverse Opposite:

p-value:1e-446
log p-value:-1.028e+03
Information Content per bp:1.834
Number of Target Sequences with motif5408.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif23362.9
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets21.3 +/- 8.7bp
Average Position of motif in Background20.6 +/- 9.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4794 MIMAT0019967 Homo sapiens miR-4794 Targets (miRBase)

Match Rank:1
Score:0.63
Offset:-11
Orientation:forward strand
Alignment:-----------AATTAGCCGG-
ACAGTCTCGTGAGATAGCCAGA

hsa-miR-34a* MIMAT0004557 Homo sapiens miR-34a* Targets (miRBase)

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AATTAGCCGG-----------
CAATCAGCAAGTATACTGCCCT

hsa-miR-562 MIMAT0003226 Homo sapiens miR-562 Targets (miRBase)

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AATTAGCCGG---------
AAAGTAGCTGTACCATTTGC

hsa-miR-892b MIMAT0004918 Homo sapiens miR-892b Targets (miRBase)

Match Rank:4
Score:0.60
Offset:-10
Orientation:forward strand
Alignment:----------AATTAGCCGG--
TCTACCCAGAAAGGAGCCAGTG

hsa-miR-1276 MIMAT0005930 Homo sapiens miR-1276 Targets (miRBase)

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AATTAGCCGG---------
TAAAGAGCCCTGTGGAGACA

hsa-miR-4267 MIMAT0016893 Homo sapiens miR-4267 Targets (miRBase)

Match Rank:6
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AATTAGCCGG-
GTGCCACCGAGCTGGA

hsa-miR-138-2* MIMAT0004596 Homo sapiens miR-138-2* Targets (miRBase)

Match Rank:7
Score:0.56
Offset:-15
Orientation:forward strand
Alignment:---------------AATTAGCCGG
AACCCTGGTGTCGTGAAATAGC---

hsa-miR-4448 MIMAT0018967 Homo sapiens miR-4448 Targets (miRBase)

Match Rank:8
Score:0.56
Offset:-12
Orientation:forward strand
Alignment:------------AATTAGCCGG
TACCCCTAGACCAAGGAGCC--

hsa-miR-4735-5p MIMAT0019860 Homo sapiens miR-4735-5p Targets (miRBase)

Match Rank:9
Score:0.56
Offset:-15
Orientation:forward strand
Alignment:---------------AATTAGCCGG
TACCGAAGGTGTTCAAATTAGG---

hsa-miR-4720-5p MIMAT0019833 Homo sapiens miR-4720-5p Targets (miRBase)

Match Rank:10
Score:0.56
Offset:-11
Orientation:forward strand
Alignment:-----------AATTAGCCGG-
AAGTTATACCAAATATGCCAGG