Information for 5-AGATVGRAAG (Motif 3)


Reverse Opposite:

p-value:1e-297
log p-value:-6.854e+02
Information Content per bp:1.712
Number of Target Sequences with motif12026.0
Percentage of Target Sequences with motif20.21%
Number of Background Sequences with motif64413.7
Percentage of Background Sequences with motif14.26%
Average Position of motif in Targets24.2 +/- 8.7bp
Average Position of motif in Background20.9 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4297 MIMAT0016846 Homo sapiens miR-4297 Targets (miRBase)

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGATVGRAAG---
CACAGACAGGAAGGCA

hsa-miR-617 MIMAT0003286 Homo sapiens miR-617 Targets (miRBase)

Match Rank:2
Score:0.62
Offset:-9
Orientation:forward strand
Alignment:---------AGATVGRAAG---
GCCACCTTCAAATGGGAAGTCT

hsa-miR-3667-3p MIMAT0018090 Homo sapiens miR-3667-3p Targets (miRBase)

Match Rank:3
Score:0.59
Offset:-10
Orientation:forward strand
Alignment:----------AGATVGRAAG--
AAAGACCCATGGAGAGGAAGGT

hsa-miR-516a-3p MIMAT0006778 Homo sapiens miR-516a-3p Targets (miRBase)

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGATVGRAAG--
ACCCTCTGAAAGGAAGCA

hsa-miR-516b* MIMAT0002860 Homo sapiens miR-516b* Targets (miRBase)

Match Rank:5
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGATVGRAAG--
ACCCTCTGAAAGGAAGCA

hsa-miR-3978 MIMAT0019363 Homo sapiens miR-3978 Targets (miRBase)

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGATVGRAAG----------------
--GTGGAAAGCATGCATCCAGGGTGT

hsa-miR-3688-3p MIMAT0018116 Homo sapiens miR-3688-3p Targets (miRBase)

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGATVGRAAG-------------
-TATGGAAAGACTTTGCCACTCT

hsa-miR-130b* MIMAT0004680 Homo sapiens miR-130b* Targets (miRBase)

Match Rank:8
Score:0.58
Offset:-8
Orientation:forward strand
Alignment:--------AGATVGRAAG---
GTAGTGCAACAGGGAAAGAGT

hsa-miR-150 MIMAT0000451 Homo sapiens miR-150 Targets (miRBase)

Match Rank:9
Score:0.58
Offset:-11
Orientation:forward strand
Alignment:-----------AGATVGRAAG-
CACTGGTACAAGGGTTGGGAGA

hsa-miR-502-5p MIMAT0002873 Homo sapiens miR-502-5p Targets (miRBase)

Match Rank:10
Score:0.58
Offset:-8
Orientation:forward strand
Alignment:--------AGATVGRAAG---
TAGCACCCAGATAGCAAGGAT