Information for 2-GADRGAGAGA (Motif 2)


Reverse Opposite:

p-value:1e-837
log p-value:-1.929e+03
Information Content per bp:1.494
Number of Target Sequences with motif22785.0
Percentage of Target Sequences with motif26.36%
Number of Background Sequences with motif130511.6
Percentage of Background Sequences with motif17.37%
Average Position of motif in Targets182.1 +/- 149.4bp
Average Position of motif in Background132.3 +/- 185.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4306 MIMAT0016858 Homo sapiens miR-4306 Targets (miRBase)

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GADRGAGAGA---------
--TGGAGAGAAAGGCAGTA

hsa-miR-185 MIMAT0000455 Homo sapiens miR-185 Targets (miRBase)

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GADRGAGAGA--------------
--TGGAGAGAAAGGCAGTTCCTGA

hsa-miR-4644 MIMAT0019704 Homo sapiens miR-4644 Targets (miRBase)

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GADRGAGAGA---------------
--TGGAGAGAGAAAAGAGACAGAAG

hsa-miR-4311 MIMAT0016863 Homo sapiens miR-4311 Targets (miRBase)

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GADRGAGAGA--------
GAAAGAGAGCTGAGTGTG

hsa-miR-4768-5p MIMAT0019920 Homo sapiens miR-4768-5p Targets (miRBase)

Match Rank:5
Score:0.64
Offset:-10
Orientation:forward strand
Alignment:----------GADRGAGAGA--
ATCCATGGGATCCAGAGAGAAT

hsa-miR-4753-3p MIMAT0019891 Homo sapiens miR-4753-3p Targets (miRBase)

Match Rank:6
Score:0.62
Offset:-11
Orientation:forward strand
Alignment:-----------GADRGAGAGA-
ACACAAGGCTAAAGAAAGAGAA

hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p Targets (miRBase)

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GADRGAGAGA-------------
-AAAGATAGACAATTGGCTAAAT

hsa-miR-4685-3p MIMAT0019772 Homo sapiens miR-4685-3p Targets (miRBase)

Match Rank:8
Score:0.62
Offset:-12
Orientation:forward strand
Alignment:------------GADRGAGAGA
CTAGCCAGGGCAGGAAGGGAGA

hsa-miR-642a MIMAT0003312 Homo sapiens miR-642a Targets (miRBase)

Match Rank:9
Score:0.61
Offset:-11
Orientation:forward strand
Alignment:-----------GADRGAGAGA-
CAAGACACATTTGGAGAGGGAC

hsa-miR-4723-3p MIMAT0019839 Homo sapiens miR-4723-3p Targets (miRBase)

Match Rank:10
Score:0.61
Offset:-11
Orientation:forward strand
Alignment:-----------GADRGAGAGA-
TTTGGGGAGGAGCCAGAGAGGG