Information for 4-AGCGG (Motif 6)


Reverse Opposite:

p-value:1e-31
log p-value:-7.188e+01
Information Content per bp:1.832
Number of Target Sequences with motif1443.0
Percentage of Target Sequences with motif16.87%
Number of Background Sequences with motif8814.4
Percentage of Background Sequences with motif12.24%
Average Position of motif in Targets30.1 +/- 19.6bp
Average Position of motif in Background27.4 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-572 MIMAT0003237 Homo sapiens miR-572 Targets (miRBase)

Match Rank:1
Score:0.71
Offset:-13
Orientation:forward strand
Alignment:-------------AGCGG--
TGGGCCACCGCCGAGCGGAC

hsa-miR-4321 MIMAT0016874 Homo sapiens miR-4321 Targets (miRBase)

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AGCGG--------------
TTAGCGGTGGACCGCCCTGCG

hsa-miR-4781-5p MIMAT0019942 Homo sapiens miR-4781-5p Targets (miRBase)

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AGCGG---------------
TAGCGGGGATTCCAATATTGG

hsa-miR-3610 MIMAT0017987 Homo sapiens miR-3610 Targets (miRBase)

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGCGG-------------
GAATCGGAAAGGAGGCGCCG

hsa-miR-4315 MIMAT0016866 Homo sapiens miR-4315 Targets (miRBase)

Match Rank:5
Score:0.63
Offset:-13
Orientation:forward strand
Alignment:-------------AGCGG
GTCCAGCTCAGAAAGCGG

hsa-miR-29c* MIMAT0004673 Homo sapiens miR-29c* Targets (miRBase)

Match Rank:6
Score:0.63
Offset:-14
Orientation:forward strand
Alignment:--------------AGCGG---
GAACACCAGGAGAAATCGGTCA

hsa-miR-4746-3p MIMAT0019881 Homo sapiens miR-4746-3p Targets (miRBase)

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGCGG----------------
AGCGGTGCTCCTGCGGGCCGA

hsa-miR-4485 MIMAT0019019 Homo sapiens miR-4485 Targets (miRBase)

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGCGG--------------
TAACGGCCGCGGTACCCTAA

hsa-miR-885-3p MIMAT0004948 Homo sapiens miR-885-3p Targets (miRBase)

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGCGG-------------
AGGCAGCGGGGTGTAGTGGATA

hsa-miR-1468 MIMAT0006789 Homo sapiens miR-1468 Targets (miRBase)

Match Rank:10
Score:0.61
Offset:-14
Orientation:forward strand
Alignment:--------------AGCGG--
CAGCGAAACAGGCAAACGGAG