Information for 1-GATDGRDAG (Motif 2)


Reverse Opposite:

p-value:1e-867
log p-value:-1.996e+03
Information Content per bp:1.570
Number of Target Sequences with motif61248.0
Percentage of Target Sequences with motif21.37%
Number of Background Sequences with motif427614.9
Percentage of Background Sequences with motif16.57%
Average Position of motif in Targets23.0 +/- 9.0bp
Average Position of motif in Background20.4 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-516a-3p MIMAT0006778 Homo sapiens miR-516a-3p Targets (miRBase)

Match Rank:1
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------GATDGRDAG--
ACCCTCTGAAAGGAAGCA

hsa-miR-516b* MIMAT0002860 Homo sapiens miR-516b* Targets (miRBase)

Match Rank:2
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------GATDGRDAG--
ACCCTCTGAAAGGAAGCA

hsa-miR-4297 MIMAT0016846 Homo sapiens miR-4297 Targets (miRBase)

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GATDGRDAG---
CACAGACAGGAAGGCA

hsa-miR-3667-3p MIMAT0018090 Homo sapiens miR-3667-3p Targets (miRBase)

Match Rank:4
Score:0.61
Offset:-11
Orientation:forward strand
Alignment:-----------GATDGRDAG--
AAAGACCCATGGAGAGGAAGGT

hsa-miR-150 MIMAT0000451 Homo sapiens miR-150 Targets (miRBase)

Match Rank:5
Score:0.57
Offset:-12
Orientation:forward strand
Alignment:------------GATDGRDAG-
CACTGGTACAAGGGTTGGGAGA

hsa-miR-3162-3p MIMAT0019213 Homo sapiens miR-3162-3p Targets (miRBase)

Match Rank:6
Score:0.57
Offset:-9
Orientation:forward strand
Alignment:---------GATDGRDAG---
TGGGGAGTGGAGGGGTAGGGA

hsa-miR-4458 MIMAT0018980 Homo sapiens miR-4458 Targets (miRBase)

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GATDGRDAG-----------
-AGAGGTAGGTGTGGAAGAA

hsa-miR-617 MIMAT0003286 Homo sapiens miR-617 Targets (miRBase)

Match Rank:8
Score:0.56
Offset:-10
Orientation:forward strand
Alignment:----------GATDGRDAG---
GCCACCTTCAAATGGGAAGTCT

hsa-miR-4441 MIMAT0018959 Homo sapiens miR-4441 Targets (miRBase)

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GATDGRDAG---------
-ACAGGGAGGAGATTGTA

hsa-miR-196a MIMAT0000226 Homo sapiens miR-196a Targets (miRBase)

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GATDGRDAG---------------
--TAGGTAGTTTCATGTTGTTGGG