Information for 7-GCGGAAGAT (Motif 12)


Reverse Opposite:

p-value:1e-26
log p-value:-6.187e+01
Information Content per bp:1.622
Number of Target Sequences with motif233.0
Percentage of Target Sequences with motif2.42%
Number of Background Sequences with motif808.3
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets28.8 +/- 18.7bp
Average Position of motif in Background27.5 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-141* MIMAT0004598 Homo sapiens miR-141* Targets (miRBase)

Match Rank:1
Score:0.72
Offset:-12
Orientation:forward strand
Alignment:------------GCGGAAGAT-
TCCAACACTGTACTGGAAGATG

hsa-miR-718 MIMAT0012735 Homo sapiens miR-718 Targets (miRBase)

Match Rank:2
Score:0.70
Offset:-14
Orientation:forward strand
Alignment:--------------GCGGAAGAT
CGACGCCCGGCGGGGCGGAAG--

hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271 Targets (miRBase)

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCGGAAGAT---------
GGGGGAAGAAAAGGTGGGG

hsa-miR-3190 MIMAT0015073 Homo sapiens miR-3190 Targets (miRBase)

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCGGAAGAT-------------
TGTGGAAGGTAGACGGCCAGAGA

hsa-miR-1236 MIMAT0005591 Homo sapiens miR-1236 Targets (miRBase)

Match Rank:5
Score:0.64
Offset:-12
Orientation:forward strand
Alignment:------------GCGGAAGAT-
CTGGAGAGACAAGGGGAAGAGG

hsa-miR-4699-5p MIMAT0019794 Homo sapiens miR-4699-5p Targets (miRBase)

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCGGAAGAT---------------
--AGAAGATTGCAGAGTAAGTTCC

hsa-miR-3669 MIMAT0018092 Homo sapiens miR-3669 Targets (miRBase)

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCGGAAGAT--------------
ACGGAATATGTATACGGAATATA

hsa-miR-4426 MIMAT0018941 Homo sapiens miR-4426 Targets (miRBase)

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCGGAAGAT-----------
---GAAGATGGACGTACTTT

hsa-miR-4671-5p MIMAT0019752 Homo sapiens miR-4671-5p Targets (miRBase)

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCGGAAGAT-------------
ACCGAAGACTGTGCGCTAATCT

hsa-miR-4725-3p MIMAT0019844 Homo sapiens miR-4725-3p Targets (miRBase)

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCGGAAGAT------------
TGGGGAAGGCGTCAGTGTCGGG