Information for 3-AGCTGGAGMR (Motif 4)


Reverse Opposite:

p-value:1e-48
log p-value:-1.111e+02
Information Content per bp:1.528
Number of Target Sequences with motif852.0
Percentage of Target Sequences with motif8.86%
Number of Background Sequences with motif3996.2
Percentage of Background Sequences with motif5.01%
Average Position of motif in Targets31.1 +/- 17.8bp
Average Position of motif in Background28.4 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-3135b MIMAT0018985 Homo sapiens miR-3135b Targets (miRBase)

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:AGCTGGAGMR------------
GGCTGGAGCGAGTGCAGTGGTG

hsa-miR-4267 MIMAT0016893 Homo sapiens miR-4267 Targets (miRBase)

Match Rank:2
Score:0.68
Offset:-9
Orientation:forward strand
Alignment:---------AGCTGGAGMR
GTGCCACCGAGCTGGA---

hsa-miR-1251 MIMAT0005903 Homo sapiens miR-1251 Targets (miRBase)

Match Rank:3
Score:0.67
Offset:-12
Orientation:forward strand
Alignment:------------AGCTGGAGMR
AGCGCCTTTGGCAGCTAGAGT-

hsa-miR-766 MIMAT0003888 Homo sapiens miR-766 Targets (miRBase)

Match Rank:4
Score:0.65
Offset:-13
Orientation:forward strand
Alignment:-------------AGCTGGAGMR
GCTGAGGCTGTGGGGCTGGAGT-

hsa-miR-451b MIMAT0019840 Homo sapiens miR-451b Targets (miRBase)

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGCTGGAGMR-----------
TAGCAAGAGAACCATTACCATT

hsa-miR-4430 MIMAT0018945 Homo sapiens miR-4430 Targets (miRBase)

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGCTGGAGMR-------
AGGCTGGAGTGAGCGGAG

hsa-miR-4531 MIMAT0019070 Homo sapiens miR-4531 Targets (miRBase)

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGCTGGAGMR---------
--ATGGAGAAGGCTTCTGA

hsa-miR-3156-3p MIMAT0019209 Homo sapiens miR-3156-3p Targets (miRBase)

Match Rank:8
Score:0.59
Offset:-13
Orientation:forward strand
Alignment:-------------AGCTGGAGMR
AGAAAGATCTGGAAGTGGGAG--

hsa-miR-4469 MIMAT0018996 Homo sapiens miR-4469 Targets (miRBase)

Match Rank:9
Score:0.59
Offset:-13
Orientation:forward strand
Alignment:-------------AGCTGGAGMR
TCCGAGCGACCCTAGAGGGAGC-

hsa-miR-320e MIMAT0015072 Homo sapiens miR-320e Targets (miRBase)

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGCTGGAGMR------
AAAGCTGGGTTGAGAAGG