Information for 5-GAGAGAGA (Motif 4)


Reverse Opposite:

p-value:1e-178
log p-value:-4.112e+02
Information Content per bp:1.530
Number of Target Sequences with motif1311.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif3675.1
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets22.7 +/- 9.6bp
Average Position of motif in Background20.9 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4644 MIMAT0019704 Homo sapiens miR-4644 Targets (miRBase)

Match Rank:1
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGA-------------
TGGAGAGAGAAAAGAGACAGAAG

hsa-miR-4306 MIMAT0016858 Homo sapiens miR-4306 Targets (miRBase)

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGA-------
TGGAGAGAAAGGCAGTA

hsa-miR-4311 MIMAT0016863 Homo sapiens miR-4311 Targets (miRBase)

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGA----------
GAAAGAGAGCTGAGTGTG

hsa-miR-4768-5p MIMAT0019920 Homo sapiens miR-4768-5p Targets (miRBase)

Match Rank:4
Score:0.72
Offset:-12
Orientation:forward strand
Alignment:------------GAGAGAGA--
ATCCATGGGATCCAGAGAGAAT

hsa-miR-185 MIMAT0000455 Homo sapiens miR-185 Targets (miRBase)

Match Rank:5
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGA------------
TGGAGAGAAAGGCAGTTCCTGA

hsa-miR-4639-3p MIMAT0019698 Homo sapiens miR-4639-3p Targets (miRBase)

Match Rank:6
Score:0.71
Offset:-12
Orientation:forward strand
Alignment:------------GAGAGAGA
GCAAAGCAAGGTGAGAGTGA

hsa-miR-3183 MIMAT0015063 Homo sapiens miR-3183 Targets (miRBase)

Match Rank:7
Score:0.70
Offset:-13
Orientation:forward strand
Alignment:-------------GAGAGAGA-
TCCGAGCGACTCCGAGAGAGGC

hsa-miR-642a MIMAT0003312 Homo sapiens miR-642a Targets (miRBase)

Match Rank:8
Score:0.70
Offset:-13
Orientation:forward strand
Alignment:-------------GAGAGAGA-
CAAGACACATTTGGAGAGGGAC

hsa-miR-4753-3p MIMAT0019891 Homo sapiens miR-4753-3p Targets (miRBase)

Match Rank:9
Score:0.70
Offset:-13
Orientation:forward strand
Alignment:-------------GAGAGAGA-
ACACAAGGCTAAAGAAAGAGAA

hsa-miR-4419a MIMAT0018931 Homo sapiens miR-4419a Targets (miRBase)

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGAGA--------
TGAGGGAGGAGACTGCA