Information for 15-TAGACAGCA (Motif 20)


Reverse Opposite:

p-value:1e-7
log p-value:-1.823e+01
Information Content per bp:1.946
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif12.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets28.9 +/- 10.1bp
Average Position of motif in Background25.3 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-626 MIMAT0003295 Homo sapiens miR-626 Targets (miRBase)

Match Rank:1
Score:0.74
Offset:-10
Orientation:forward strand
Alignment:----------TAGACAGCA
AAGACATTTTCAGACAGCT

hsa-miR-196b* MIMAT0009201 Homo sapiens miR-196b* Targets (miRBase)

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TAGACAGCA-------------
TCGACAGCACGACACTGCCTTC

hsa-miR-4305 MIMAT0016857 Homo sapiens miR-4305 Targets (miRBase)

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TAGACAGCA-------
CCTAGACACCTCCAGTTC

hsa-miR-3160-5p MIMAT0019212 Homo sapiens miR-3160-5p Targets (miRBase)

Match Rank:4
Score:0.64
Offset:-13
Orientation:forward strand
Alignment:-------------TAGACAGCA
GGAGAGCTGAGACTAGAAAGCC

hsa-miR-3913-3p MIMAT0019225 Homo sapiens miR-3913-3p Targets (miRBase)

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TAGACAGCA--------------
-AGACATCAAGATCAGTCCCAAA

hsa-miR-4645-3p MIMAT0019706 Homo sapiens miR-4645-3p Targets (miRBase)

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TAGACAGCA--------------
-AGACAGTAGTTCTTGCCTGGTT

hsa-miR-4672 MIMAT0019754 Homo sapiens miR-4672 Targets (miRBase)

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TAGACAGCA-----------
TTACACAGCTGGACAGAGGCA

hsa-miR-151-3p MIMAT0000757 Homo sapiens miR-151-3p Targets (miRBase)

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TAGACAGCA-----------
CTAGACTGAAGCTCCTTGAGG

hsa-miR-4794 MIMAT0019967 Homo sapiens miR-4794 Targets (miRBase)

Match Rank:9
Score:0.63
Offset:-14
Orientation:forward strand
Alignment:--------------TAGACAGCA
ACAGTCTCGTGAGATAGCCAGA-

hsa-miR-4520a-3p MIMAT0019057 Homo sapiens miR-4520a-3p Targets (miRBase)

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TAGACAGCA------------
TTGGACAGAAAACACGCAGGAA