Information for 2-TGRTCGGA (Motif 3)


Reverse Opposite:

p-value:1e-543
log p-value:-1.252e+03
Information Content per bp:1.493
Number of Target Sequences with motif52008.0
Percentage of Target Sequences with motif18.15%
Number of Background Sequences with motif375664.6
Percentage of Background Sequences with motif14.56%
Average Position of motif in Targets22.0 +/- 10.1bp
Average Position of motif in Background20.9 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-1260b MIMAT0015041 Homo sapiens miR-1260b Targets (miRBase)

Match Rank:1
Score:0.72
Offset:-10
Orientation:forward strand
Alignment:----------TGRTCGGA-
ATGGTGGCAGTGGTGGGAT

hsa-miR-1260 MIMAT0005911 Homo sapiens miR-1260 Targets (miRBase)

Match Rank:2
Score:0.70
Offset:-9
Orientation:forward strand
Alignment:---------TGRTCGGA-
TGGTGGCAGAGGTGGGAT

hsa-miR-4743 MIMAT0019874 Homo sapiens miR-4743 Targets (miRBase)

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGRTCGGA---------------
TGGCCGGATGGGACAGGAGGCAT

hsa-miR-4425 MIMAT0018940 Homo sapiens miR-4425 Targets (miRBase)

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGRTCGGA--------------
TGTTGGGATTCAGCAGGACCAT

hsa-miR-541 MIMAT0004920 Homo sapiens miR-541 Targets (miRBase)

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGRTCGGA--------------
TGGTGGGCACAGAATCTGGACT

hsa-miR-654-5p MIMAT0003330 Homo sapiens miR-654-5p Targets (miRBase)

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGRTCGGA--------------
TGGTGGGCCGCAGAACATGTGC

hsa-miR-184 MIMAT0000454 Homo sapiens miR-184 Targets (miRBase)

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGRTCGGA--------------
TGGACGGAGAACTGATAAGGGT

hsa-miR-4256 MIMAT0016877 Homo sapiens miR-4256 Targets (miRBase)

Match Rank:8
Score:0.59
Offset:-9
Orientation:forward strand
Alignment:---------TGRTCGGA-
ACCTTCATCAGGTCAGAT

hsa-miR-1224-3p MIMAT0005459 Homo sapiens miR-1224-3p Targets (miRBase)

Match Rank:9
Score:0.59
Offset:-13
Orientation:forward strand
Alignment:-------------TGRTCGGA
CTGAGGAGAGAGGAGGTGGGG

hsa-miR-4258 MIMAT0016879 Homo sapiens miR-4258 Targets (miRBase)

Match Rank:10
Score:0.57
Offset:-9
Orientation:forward strand
Alignment:---------TGRTCGGA
CCAAGGCGGTGGCGGGG