Information for 6-GCCTGTAATC (Motif 7)


Reverse Opposite:

p-value:1e-318
log p-value:-7.322e+02
Information Content per bp:1.671
Number of Target Sequences with motif4276.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif19270.4
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets19.0 +/- 9.0bp
Average Position of motif in Background19.0 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-5095 MIMAT0020600 Homo sapiens miR-5095 Targets (miRBase)

Match Rank:1
Score:0.77
Offset:-13
Orientation:forward strand
Alignment:-------------GCCTGTAATC
CGCGGTGGTTCACGCCTGTAA--

hsa-miR-4742-3p MIMAT0019873 Homo sapiens miR-4742-3p Targets (miRBase)

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCCTGTAATC--------------
-TCTGTATTCTCCTTTGCCTGCAG

hsa-miR-486-5p MIMAT0002177 Homo sapiens miR-486-5p Targets (miRBase)

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCCTGTAATC------------
TCCTGTACTGAGCTGCCCCGAG

hsa-miR-20b* MIMAT0004752 Homo sapiens miR-20b* Targets (miRBase)

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCCTGTAATC-------------
-ACTGTAGTATGGGCACTTCCAG

hsa-miR-2054 MIMAT0009979 Homo sapiens miR-2054 Targets (miRBase)

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCCTGTAATC---------------
--CTGTAATATAAATTTAATTTATT

hsa-miR-3159 MIMAT0015033 Homo sapiens miR-3159 Targets (miRBase)

Match Rank:6
Score:0.61
Offset:-9
Orientation:forward strand
Alignment:---------GCCTGTAATC---
GTGGCCGACACTTGTAATCCTA

hsa-miR-1254 MIMAT0005905 Homo sapiens miR-1254 Targets (miRBase)

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGTAATC-------------
AGCCTGGAAGCTGGAGCCTGCAGT

hsa-miR-4438 MIMAT0018956 Homo sapiens miR-4438 Targets (miRBase)

Match Rank:8
Score:0.61
Offset:-14
Orientation:forward strand
Alignment:--------------GCCTGTAATC
ACTGTCTTTTCTAAGCCTGTG---

hsa-miR-3607-3p MIMAT0017985 Homo sapiens miR-3607-3p Targets (miRBase)

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCCTGTAATC-----------
-ACTGTAAACGCTTTCTGATG

hsa-miR-566 MIMAT0003230 Homo sapiens miR-566 Targets (miRBase)

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCCTGTAATC-----
GGGCGCCTGTGATCCCAAC