Information for 10-TTAGG (Motif 19)


Reverse Opposite:

p-value:1e-8
log p-value:-2.064e+01
Information Content per bp:1.937
Number of Target Sequences with motif523.0
Percentage of Target Sequences with motif6.11%
Number of Background Sequences with motif3312.4
Percentage of Background Sequences with motif4.60%
Average Position of motif in Targets26.2 +/- 17.1bp
Average Position of motif in Background27.3 +/- 21.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-1258 MIMAT0005909 Homo sapiens miR-1258 Targets (miRBase)

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TTAGG--------------
AGTTAGGATTAGGTCGTGGAA

hsa-miR-2909 MIMAT0013863 Homo sapiens miR-2909 Targets (miRBase)

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TTAGG---------------
GTTAGGGCCAACATCTCTTGG

hsa-miR-18b* MIMAT0004751 Homo sapiens miR-18b* Targets (miRBase)

Match Rank:3
Score:0.72
Offset:-14
Orientation:forward strand
Alignment:--------------TTAGG---
GCCAGAAGGGGCATTTAGGGCA

hsa-miR-651 MIMAT0003321 Homo sapiens miR-651 Targets (miRBase)

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTAGG----------------
TTTAGGATAAGCTTGACTTTTG

hsa-miR-676 MIMAT0018204 Homo sapiens miR-676 Targets (miRBase)

Match Rank:5
Score:0.66
Offset:-12
Orientation:forward strand
Alignment:------------TTAGG----
AACTCAACAACCTTAGGACAG

hsa-miR-4774-3p MIMAT0019930 Homo sapiens miR-4774-3p Targets (miRBase)

Match Rank:6
Score:0.66
Offset:-12
Orientation:forward strand
Alignment:------------TTAGG----
TTCTGGCACATGTTAGGCAAT

hsa-miR-1295 MIMAT0005885 Homo sapiens miR-1295 Targets (miRBase)

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTAGG----------------
TTAGGCCGCAGATCTGGGTGA

hsa-miR-1296 MIMAT0005794 Homo sapiens miR-1296 Targets (miRBase)

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTAGG-----------------
TTAGGGCCCTGGCTCCATCTCC

hsa-miR-3162-5p MIMAT0015036 Homo sapiens miR-3162-5p Targets (miRBase)

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTAGG------------------
TTAGGGAGTAGAAGGGTGGGGAG

hsa-miR-4735-5p MIMAT0019860 Homo sapiens miR-4735-5p Targets (miRBase)

Match Rank:10
Score:0.63
Offset:-17
Orientation:forward strand
Alignment:-----------------TTAGG
TACCGAAGGTGTTCAAATTAGG