Information for 1-TNVSVCAGAT (Motif 1)


Reverse Opposite:

p-value:1e-924
log p-value:-2.129e+03
Information Content per bp:1.530
Number of Target Sequences with motif22205.0
Percentage of Target Sequences with motif7.75%
Number of Background Sequences with motif122675.8
Percentage of Background Sequences with motif4.75%
Average Position of motif in Targets23.2 +/- 7.6bp
Average Position of motif in Background21.0 +/- 12.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-3126-3p MIMAT0015377 Homo sapiens miR-3126-3p Targets (miRBase)

Match Rank:1
Score:0.66
Offset:-11
Orientation:forward strand
Alignment:-----------TNVSVCAGAT-
TCTGTGTGACGGATGCCAGATG

hsa-miR-488* MIMAT0002804 Homo sapiens miR-488* Targets (miRBase)

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TNVSVCAGAT--------------
---CCCAGATAATGGCACTCTCAA

hsa-miR-10b* MIMAT0004556 Homo sapiens miR-10b* Targets (miRBase)

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TNVSVCAGAT----------------
----ACAGATTCGATTCTAGGGGAAT

hsa-miR-4330 MIMAT0016924 Homo sapiens miR-4330 Targets (miRBase)

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TNVSVCAGAT-----------
--CCTCAGATCAGAGCCTTGC

hsa-miR-4686 MIMAT0019773 Homo sapiens miR-4686 Targets (miRBase)

Match Rank:5
Score:0.62
Offset:-12
Orientation:forward strand
Alignment:------------TNVSVCAGAT-
AACACCAGAAAGCCCAGCAGATA

hsa-miR-4256 MIMAT0016877 Homo sapiens miR-4256 Targets (miRBase)

Match Rank:6
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------TNVSVCAGAT
ACCTTCATCAGGTCAGAT

hsa-miR-1245b-3p MIMAT0019951 Homo sapiens miR-1245b-3p Targets (miRBase)

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TNVSVCAGAT----------------
----TCAGATGATCTAAAGGCCTATA

hsa-miR-4756-3p MIMAT0019900 Homo sapiens miR-4756-3p Targets (miRBase)

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TNVSVCAGAT--------------
--CCAGAGATGGTTGCCTTCCTAT

hsa-miR-1273f MIMAT0020601 Homo sapiens miR-1273f Targets (miRBase)

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TNVSVCAGAT-------------
----GGAGATGGAGGTTGCAGTG

hsa-miR-216b MIMAT0004959 Homo sapiens miR-216b Targets (miRBase)

Match Rank:10
Score:0.60
Offset:-10
Orientation:forward strand
Alignment:----------TNVSVCAGAT--
TCACATTTGCCTGCAGAGATTT