Information for 6-GAKAKAKA (Motif 10)


Reverse Opposite:

p-value:1e-286
log p-value:-6.587e+02
Information Content per bp:1.761
Number of Target Sequences with motif5536.0
Percentage of Target Sequences with motif1.93%
Number of Background Sequences with motif28393.4
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets23.5 +/- 9.3bp
Average Position of motif in Background21.2 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-3976 MIMAT0019361 Homo sapiens miR-3976 Targets (miRBase)

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GAKAKAKA----------------
TATAGAGAGCAGGAAGATTAATGT

hsa-miR-4644 MIMAT0019704 Homo sapiens miR-4644 Targets (miRBase)

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GAKAKAKA-------------
TGGAGAGAGAAAAGAGACAGAAG

hsa-miR-4306 MIMAT0016858 Homo sapiens miR-4306 Targets (miRBase)

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GAKAKAKA-------
TGGAGAGAAAGGCAGTA

hsa-miR-4311 MIMAT0016863 Homo sapiens miR-4311 Targets (miRBase)

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GAKAKAKA----------
GAAAGAGAGCTGAGTGTG

hsa-miR-185 MIMAT0000455 Homo sapiens miR-185 Targets (miRBase)

Match Rank:5
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAKAKAKA------------
TGGAGAGAAAGGCAGTTCCTGA

hsa-miR-4753-3p MIMAT0019891 Homo sapiens miR-4753-3p Targets (miRBase)

Match Rank:6
Score:0.64
Offset:-13
Orientation:forward strand
Alignment:-------------GAKAKAKA-
ACACAAGGCTAAAGAAAGAGAA

hsa-miR-4768-5p MIMAT0019920 Homo sapiens miR-4768-5p Targets (miRBase)

Match Rank:7
Score:0.63
Offset:-12
Orientation:forward strand
Alignment:------------GAKAKAKA--
ATCCATGGGATCCAGAGAGAAT

hsa-miR-577 MIMAT0003242 Homo sapiens miR-577 Targets (miRBase)

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAKAKAKA-------------
TAGATAAAATATTGGTACCTG

hsa-miR-3183 MIMAT0015063 Homo sapiens miR-3183 Targets (miRBase)

Match Rank:9
Score:0.60
Offset:-13
Orientation:forward strand
Alignment:-------------GAKAKAKA-
TCCGAGCGACTCCGAGAGAGGC

hsa-miR-3121-3p MIMAT0014983 Homo sapiens miR-3121-3p Targets (miRBase)

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAKAKAKA--------------
TAAATAGAGTAGGCAAAGGACA