Information for 4-AGGAA (Motif 7)


Reverse Opposite:

p-value:1e-508
log p-value:-1.171e+03
Information Content per bp:1.920
Number of Target Sequences with motif55850.0
Percentage of Target Sequences with motif64.62%
Number of Background Sequences with motif421514.0
Percentage of Background Sequences with motif56.11%
Average Position of motif in Targets171.2 +/- 154.8bp
Average Position of motif in Background131.2 +/- 167.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-516a-3p MIMAT0006778 Homo sapiens miR-516a-3p Targets (miRBase)

Match Rank:1
Score:0.73
Offset:-10
Orientation:forward strand
Alignment:----------AGGAA---
ACCCTCTGAAAGGAAGCA

hsa-miR-516b* MIMAT0002860 Homo sapiens miR-516b* Targets (miRBase)

Match Rank:2
Score:0.73
Offset:-10
Orientation:forward strand
Alignment:----------AGGAA---
ACCCTCTGAAAGGAAGCA

hsa-miR-4326 MIMAT0016888 Homo sapiens miR-4326 Targets (miRBase)

Match Rank:3
Score:0.71
Offset:-13
Orientation:forward strand
Alignment:-------------AGGAA--
GTCTGGGAGACAGAGGAACA

hsa-miR-384 MIMAT0001075 Homo sapiens miR-384 Targets (miRBase)

Match Rank:4
Score:0.71
Offset:-14
Orientation:forward strand
Alignment:--------------AGGAA-
TATGAACAATTTCTAGGAAT

hsa-miR-1238 MIMAT0005593 Homo sapiens miR-1238 Targets (miRBase)

Match Rank:5
Score:0.71
Offset:-14
Orientation:forward strand
Alignment:--------------AGGAA-
GGGGCAGACAGACGAGGAAG

hsa-miR-3125 MIMAT0014988 Homo sapiens miR-3125 Targets (miRBase)

Match Rank:6
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---AGGAA------------
TAGAGGAAGCTGTGGAGAGA

hsa-miR-3074-5p MIMAT0019208 Homo sapiens miR-3074-5p Targets (miRBase)

Match Rank:7
Score:0.71
Offset:-15
Orientation:forward strand
Alignment:---------------AGGAA-
CTGGCTCAGTTCAGCAGGAAC

hsa-miR-873 MIMAT0004953 Homo sapiens miR-873 Targets (miRBase)

Match Rank:8
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AGGAA--------------
GCAGGAACTTGTGAGTCTCCT

hsa-miR-3685 MIMAT0018113 Homo sapiens miR-3685 Targets (miRBase)

Match Rank:9
Score:0.70
Offset:-16
Orientation:forward strand
Alignment:----------------AGGAA-
AGTCTTCAGGTAGGGTAGGAAA

hsa-miR-3667-3p MIMAT0018090 Homo sapiens miR-3667-3p Targets (miRBase)

Match Rank:10
Score:0.70
Offset:-14
Orientation:forward strand
Alignment:--------------AGGAA---
AAAGACCCATGGAGAGGAAGGT