Information for 2-AGGCA (Motif 9)


Reverse Opposite:

p-value:1e-286
log p-value:-6.600e+02
Information Content per bp:1.855
Number of Target Sequences with motif62008.0
Percentage of Target Sequences with motif21.64%
Number of Background Sequences with motif485017.1
Percentage of Background Sequences with motif18.80%
Average Position of motif in Targets21.7 +/- 11.4bp
Average Position of motif in Background20.7 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-1827 MIMAT0006767 Homo sapiens miR-1827 Targets (miRBase)

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AGGCA-----------
TGAGGCAGTAGATTGAAT

hsa-miR-4514 MIMAT0019051 Homo sapiens miR-4514 Targets (miRBase)

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AGGCA-----------
ACAGGCAGGATTGGGGAA

hsa-miR-4645-5p MIMAT0019705 Homo sapiens miR-4645-5p Targets (miRBase)

Match Rank:3
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---AGGCA-----------
ACCAGGCAAGAAATATTGT

hsa-miR-4633-5p MIMAT0019689 Homo sapiens miR-4633-5p Targets (miRBase)

Match Rank:4
Score:0.73
Offset:-12
Orientation:forward strand
Alignment:------------AGGCA---
GAGGAGCTAGCCAGGCATAT

hsa-miR-548an MIMAT0019079 Homo sapiens miR-548an Targets (miRBase)

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---AGGCA------------
AAAAGGCATTGTGGTTTTTG

hsa-miR-3910 MIMAT0018184 Homo sapiens miR-3910 Targets (miRBase)

Match Rank:6
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AGGCA-------------
AAAGGCATAAAACCAAGACA

hsa-miR-124 MIMAT0000422 Homo sapiens miR-124 Targets (miRBase)

Match Rank:7
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--AGGCA-------------
TAAGGCACGCGGTGAATGCC

hsa-miR-4774-3p MIMAT0019930 Homo sapiens miR-4774-3p Targets (miRBase)

Match Rank:8
Score:0.72
Offset:-14
Orientation:forward strand
Alignment:--------------AGGCA--
TTCTGGCACATGTTAGGCAAT

hsa-miR-940 MIMAT0004983 Homo sapiens miR-940 Targets (miRBase)

Match Rank:9
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-AGGCA---------------
AAGGCAGGGCCCCCGCTCCCC

hsa-miR-4269 MIMAT0016897 Homo sapiens miR-4269 Targets (miRBase)

Match Rank:10
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AGGCA--------------
GCAGGCACAGACAGCCCTGGC