Information for 11-TSKWCCCCC (Motif 31)


Reverse Opposite:

p-value:1e-120
log p-value:-2.769e+02
Information Content per bp:1.562
Number of Target Sequences with motif8796.0
Percentage of Target Sequences with motif10.90%
Number of Background Sequences with motif60410.3
Percentage of Background Sequences with motif8.39%
Average Position of motif in Targets153.7 +/- 171.5bp
Average Position of motif in Background140.6 +/- 145.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4271 MIMAT0016901 Homo sapiens miR-4271 Targets (miRBase)

Match Rank:1
Score:0.73
Offset:-10
Orientation:forward strand
Alignment:----------TSKWCCCCC
CCCCACCTTTTCTTCCCCC

hsa-miR-3679-3p MIMAT0018105 Homo sapiens miR-3679-3p Targets (miRBase)

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TSKWCCCCC--------------
-CTTCCCCCCAGTAATCTTCATC

hsa-miR-4716-3p MIMAT0019827 Homo sapiens miR-4716-3p Targets (miRBase)

Match Rank:3
Score:0.67
Offset:-11
Orientation:forward strand
Alignment:-----------TSKWCCCCC--
TCTCCATGTTTCCTTCCCCCTT

hsa-miR-4665-5p MIMAT0019739 Homo sapiens miR-4665-5p Targets (miRBase)

Match Rank:4
Score:0.66
Offset:-12
Orientation:forward strand
Alignment:------------TSKWCCCCC--
GCTCGCGCTCACGCGTCCCCCAG

hsa-miR-625 MIMAT0003294 Homo sapiens miR-625 Targets (miRBase)

Match Rank:5
Score:0.64
Offset:-11
Orientation:forward strand
Alignment:-----------TSKWCCCCC-
GGACTATAGAACTTTCCCCCT

hsa-miR-718 MIMAT0012735 Homo sapiens miR-718 Targets (miRBase)

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TSKWCCCCC-------------
-CTTCCGCCCCGCCGGGCGTCG

hsa-miR-1913 MIMAT0007888 Homo sapiens miR-1913 Targets (miRBase)

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TSKWCCCCC-------------
TCTGCCCCCTCCGCTGCTGCCA

hsa-miR-4723-5p MIMAT0019838 Homo sapiens miR-4723-5p Targets (miRBase)

Match Rank:8
Score:0.63
Offset:-14
Orientation:forward strand
Alignment:--------------TSKWCCCCC-
TGCTCTTATCTCATGGCTCCCCCA

hsa-miR-4787-5p MIMAT0019956 Homo sapiens miR-4787-5p Targets (miRBase)

Match Rank:9
Score:0.62
Offset:-11
Orientation:forward strand
Alignment:-----------TSKWCCCCC--
GGGATGCCGCCGCCACCCCCGC

hsa-miR-1275 MIMAT0005929 Homo sapiens miR-1275 Targets (miRBase)

Match Rank:10
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------TSKWCCCCC--
GACAGCCTCTCCCCCAC