Information for 2-GAAGG (Motif 3)


Reverse Opposite:

p-value:1e-489
log p-value:-1.128e+03
Information Content per bp:1.898
Number of Target Sequences with motif37815.0
Percentage of Target Sequences with motif46.87%
Number of Background Sequences with motif275260.8
Percentage of Background Sequences with motif38.21%
Average Position of motif in Targets167.5 +/- 158.3bp
Average Position of motif in Background127.7 +/- 159.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.66
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4297 MIMAT0016846 Homo sapiens miR-4297 Targets (miRBase)

Match Rank:1
Score:0.76
Offset:-9
Orientation:forward strand
Alignment:---------GAAGG--
CACAGACAGGAAGGCA

hsa-miR-4724-3p MIMAT0019842 Homo sapiens miR-4724-3p Targets (miRBase)

Match Rank:2
Score:0.72
Offset:-13
Orientation:forward strand
Alignment:-------------GAAGG---
ACTAGCTGAACCAGAAGGTAC

hsa-miR-1237 MIMAT0005592 Homo sapiens miR-1237 Targets (miRBase)

Match Rank:3
Score:0.72
Offset:-15
Orientation:forward strand
Alignment:---------------GAAGG-
CTGGGGGACGGAGCAGAAGGA

hsa-miR-4493 MIMAT0019028 Homo sapiens miR-4493 Targets (miRBase)

Match Rank:4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GAAGG---------------
AGAAGGCCTTTCCATCTCTGT

hsa-miR-3667-3p MIMAT0018090 Homo sapiens miR-3667-3p Targets (miRBase)

Match Rank:5
Score:0.72
Offset:-16
Orientation:forward strand
Alignment:----------------GAAGG-
AAAGACCCATGGAGAGGAAGGT

hsa-miR-205 MIMAT0000266 Homo sapiens miR-205 Targets (miRBase)

Match Rank:6
Score:0.72
Offset:-16
Orientation:forward strand
Alignment:----------------GAAGG-
CAGACTCCGGTGGAATGAAGGA

hsa-miR-3127-3p MIMAT0019201 Homo sapiens miR-3127-3p Targets (miRBase)

Match Rank:7
Score:0.72
Offset:-14
Orientation:forward strand
Alignment:--------------GAAGG---
CCAGCAGGCCTGCAGAAGGGGA

hsa-miR-3179 MIMAT0015056 Homo sapiens miR-3179 Targets (miRBase)

Match Rank:8
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GAAGG----------------
AGAAGGGGTGAAATTTAAACGT

hsa-miR-4533 MIMAT0019072 Homo sapiens miR-4533 Targets (miRBase)

Match Rank:9
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GAAGG---------------
TGGAAGGAGGTTGCCGGACGCT

hsa-miR-3202 MIMAT0015089 Homo sapiens miR-3202 Targets (miRBase)

Match Rank:10
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GAAGG---------------
TGGAAGGGAGAAGAGCTTTAAT