Information for 12-GCGCGC (Motif 14)


Reverse Opposite:

p-value:1e-14
log p-value:-3.256e+01
Information Content per bp:1.915
Number of Target Sequences with motif464.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif2340.7
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets21.0 +/- 10.1bp
Average Position of motif in Background21.3 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-4783-5p MIMAT0019946 Homo sapiens miR-4783-5p Targets (miRBase)

Match Rank:1
Score:0.79
Offset:-14
Orientation:forward strand
Alignment:--------------GCGCGC-
AGCCCGGGAGCTGGGCGCGCC

hsa-miR-3178 MIMAT0015055 Homo sapiens miR-3178 Targets (miRBase)

Match Rank:2
Score:0.67
Offset:-8
Orientation:forward strand
Alignment:--------GCGCGC---
CGATCCGGCCGCGCCCC

hsa-miR-4707-3p MIMAT0019808 Homo sapiens miR-4707-3p Targets (miRBase)

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCGCGC---------------
AGCCCGCCCCAGCCGAGGTTCT

hsa-miR-4767 MIMAT0019919 Homo sapiens miR-4767 Targets (miRBase)

Match Rank:4
Score:0.64
Offset:-16
Orientation:forward strand
Alignment:----------------GCGCGC-
GGCGGCGGCCAGGAGCGCCCGCG

hsa-miR-3939 MIMAT0018355 Homo sapiens miR-3939 Targets (miRBase)

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCGCGC---------------
TACGCGCAGACCACAGGATGTC

hsa-miR-4634 MIMAT0019691 Homo sapiens miR-4634 Targets (miRBase)

Match Rank:6
Score:0.63
Offset:-11
Orientation:forward strand
Alignment:-----------GCGCGC--
CCCCGGGCCGGTCGCGCCG

hsa-miR-523 MIMAT0002840 Homo sapiens miR-523 Targets (miRBase)

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGC---------------
GAACGCGCTTCCCTATAGAGGGT

hsa-miR-4479 MIMAT0019011 Homo sapiens miR-4479 Targets (miRBase)

Match Rank:8
Score:0.61
Offset:-15
Orientation:forward strand
Alignment:---------------GCGCGC-
CTGCTCCGAGCACGGCCGCGCG

hsa-miR-937 MIMAT0004980 Homo sapiens miR-937 Targets (miRBase)

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCGCGC--------------
ATCCGCGCTCTGACTCTCTGCC

hsa-miR-2277-5p MIMAT0017352 Homo sapiens miR-2277-5p Targets (miRBase)

Match Rank:10
Score:0.60
Offset:-17
Orientation:forward strand
Alignment:-----------------GCGCGC-
GACTGGCAGCGCTCAGCCCGCGCT