Information for 13-AHCAHCAHCA (Motif 17)


Reverse Opposite:

p-value:1e-93
log p-value:-2.146e+02
Information Content per bp:1.682
Number of Target Sequences with motif813.0
Percentage of Target Sequences with motif0.28%
Number of Background Sequences with motif3014.1
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets20.4 +/- 10.0bp
Average Position of motif in Background21.3 +/- 11.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-21* MIMAT0004494 Homo sapiens miR-21* Targets (miRBase)

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AHCAHCAHCA-------------
--CAACACCAGTCGATGGGCTGT

hsa-miR-4502 MIMAT0019038 Homo sapiens miR-4502 Targets (miRBase)

Match Rank:2
Score:0.62
Offset:-10
Orientation:forward strand
Alignment:----------AHCAHCAHCA--
CTTCAGCACCATCATCATCAGC

hsa-miR-3591-3p MIMAT0019877 Homo sapiens miR-3591-3p Targets (miRBase)

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AHCAHCAHCA-----------
AAACACCATTGTCACACTCCAC

hsa-miR-634 MIMAT0003304 Homo sapiens miR-634 Targets (miRBase)

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AHCAHCAHCA-----------
AACCAGCACCCCAACTTTGGAC

hsa-miR-29a MIMAT0000086 Homo sapiens miR-29a Targets (miRBase)

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AHCAHCAHCA-----------
TAGCACCATCTGAAATCGGTTA

hsa-miR-4460 MIMAT0018982 Homo sapiens miR-4460 Targets (miRBase)

Match Rank:6
Score:0.57
Offset:-11
Orientation:forward strand
Alignment:-----------AHCAHCAHCA-
AAGGTAAATTCACAACCACTAT

hsa-miR-3065-3p MIMAT0015378 Homo sapiens miR-3065-3p Targets (miRBase)

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AHCAHCAHCA--------------
-TCAGCACCAGGATATTGTTGGAG

hsa-miR-1272 MIMAT0005925 Homo sapiens miR-1272 Targets (miRBase)

Match Rank:8
Score:0.56
Offset:-17
Orientation:forward strand
Alignment:-----------------AHCAHCAHCA
TTTCAGAATTTGCTGCCATCATCATC-

hsa-miR-1322 MIMAT0005953 Homo sapiens miR-1322 Targets (miRBase)

Match Rank:9
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------AHCAHCAHCA--
CAGCATCAGCAGCATCATC

hsa-miR-29c MIMAT0000681 Homo sapiens miR-29c Targets (miRBase)

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AHCAHCAHCA--------------
--TAGCACCATTTGAAATCGGTTA