Information for 3-GTAGATAG (Motif 11)


Reverse Opposite:

p-value:1e-412
log p-value:-9.509e+02
Information Content per bp:1.926
Number of Target Sequences with motif50494.0
Percentage of Target Sequences with motif58.42%
Number of Background Sequences with motif380418.0
Percentage of Background Sequences with motif50.64%
Average Position of motif in Targets164.2 +/- 157.3bp
Average Position of motif in Background135.7 +/- 159.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.55
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-3935 MIMAT0018350 Homo sapiens miR-3935 Targets (miRBase)

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GTAGATAG-------------
TGTAGATACGAGCACCAGCCAC

hsa-miR-4684-5p MIMAT0019769 Homo sapiens miR-4684-5p Targets (miRBase)

Match Rank:2
Score:0.68
Offset:-14
Orientation:forward strand
Alignment:--------------GTAGATAG
TATGTTGCAAGTCAGTAGAGAG

hsa-miR-4662a-3p MIMAT0019732 Homo sapiens miR-4662a-3p Targets (miRBase)

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTAGATAG--------------
AAAGATAGACAATTGGCTAAAT

hsa-miR-196a MIMAT0000226 Homo sapiens miR-196a Targets (miRBase)

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTAGATAG---------------
-TAGGTAGTTTCATGTTGTTGGG

hsa-miR-196b MIMAT0001080 Homo sapiens miR-196b Targets (miRBase)

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTAGATAG---------------
-TAGGTAGTTTCCTGTTGTTGGG

hsa-miR-3927 MIMAT0018202 Homo sapiens miR-3927 Targets (miRBase)

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GTAGATAG-----------
CAGGTAGATATTTGATAGGCAT

hsa-miR-1277 MIMAT0005933 Homo sapiens miR-1277 Targets (miRBase)

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GTAGATAG-----------
TACGTAGATATATATGTATTTT

hsa-miR-620 MIMAT0003289 Homo sapiens miR-620 Targets (miRBase)

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GTAGATAG----------
ATGGAGATAGATATAGAAAT

hsa-miR-454* MIMAT0003884 Homo sapiens miR-454* Targets (miRBase)

Match Rank:9
Score:0.61
Offset:-11
Orientation:forward strand
Alignment:-----------GTAGATAG---
GCAGAGACAATATTGATAGGGT

hsa-miR-577 MIMAT0003242 Homo sapiens miR-577 Targets (miRBase)

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTAGATAG--------------
-TAGATAAAATATTGGTACCTG