Information for 13-GGCAATTTA (Motif 33)


Reverse Opposite:

p-value:1e-100
log p-value:-2.319e+02
Information Content per bp:1.930
Number of Target Sequences with motif1116.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif4615.7
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets123.9 +/- 139.2bp
Average Position of motif in Background130.7 +/- 146.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-32* MIMAT0004505 Homo sapiens miR-32* Targets (miRBase)

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GGCAATTTA---------------
--CAATTTAGTGTGTGTGATATTT

hsa-miR-891b MIMAT0004913 Homo sapiens miR-891b Targets (miRBase)

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGCAATTTA-------------
TGCAACTTACCTGAGTCATTGA

hsa-miR-4317 MIMAT0016872 Homo sapiens miR-4317 Targets (miRBase)

Match Rank:3
Score:0.67
Offset:-9
Orientation:forward strand
Alignment:---------GGCAATTTA
AAACTCCCTGGCAATGT-

hsa-miR-513a-3p MIMAT0004777 Homo sapiens miR-513a-3p Targets (miRBase)

Match Rank:4
Score:0.66
Offset:-14
Orientation:forward strand
Alignment:--------------GGCAATTTA
CCTTCTCAGAAAGGTGAAATTTA

hsa-miR-106b MIMAT0000680 Homo sapiens miR-106b Targets (miRBase)

Match Rank:5
Score:0.64
Offset:-12
Orientation:forward strand
Alignment:------------GGCAATTTA
ATCTGCACTGTCAGCACTTTA

hsa-miR-519d MIMAT0002853 Homo sapiens miR-519d Targets (miRBase)

Match Rank:6
Score:0.63
Offset:-13
Orientation:forward strand
Alignment:-------------GGCAATTTA
CACTCTAAAGGGAGGCACTTTG

hsa-miR-20a MIMAT0000075 Homo sapiens miR-20a Targets (miRBase)

Match Rank:7
Score:0.63
Offset:-14
Orientation:forward strand
Alignment:--------------GGCAATTTA
CTACCTGCACTATAAGCACTTTA

hsa-miR-302f MIMAT0005932 Homo sapiens miR-302f Targets (miRBase)

Match Rank:8
Score:0.62
Offset:-9
Orientation:forward strand
Alignment:---------GGCAATTTA
AAACATGGAAGCAATTA-

hsa-miR-3128 MIMAT0014991 Homo sapiens miR-3128 Targets (miRBase)

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GGCAATTTA-----------
TCTGGCAAGTAAAAAACTCTCAT

hsa-miR-4471 MIMAT0018998 Homo sapiens miR-4471 Targets (miRBase)

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGCAATTTA------------
TGGGAACTTAGTAGAGGTTTAA