Information for 4-GTAAG (Motif 9)


Reverse Opposite:

p-value:1e-381
log p-value:-8.783e+02
Information Content per bp:1.925
Number of Target Sequences with motif28309.0
Percentage of Target Sequences with motif35.08%
Number of Background Sequences with motif201306.9
Percentage of Background Sequences with motif27.94%
Average Position of motif in Targets151.7 +/- 165.9bp
Average Position of motif in Background129.8 +/- 147.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-550b MIMAT0018445 Homo sapiens miR-550b Targets (miRBase)

Match Rank:1
Score:0.72
Offset:-14
Orientation:forward strand
Alignment:--------------GTAAG-
CAGTGCCTGAGGGAGTAAGA

hsa-miR-555 MIMAT0003219 Homo sapiens miR-555 Targets (miRBase)

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---GTAAG-------------
AGGGTAAGCTGAACCTCTGAT

hsa-miR-200c* MIMAT0004657 Homo sapiens miR-200c* Targets (miRBase)

Match Rank:3
Score:0.71
Offset:-14
Orientation:forward strand
Alignment:--------------GTAAG---
CCAAACACTGCTGGGTAAGACG

hsa-miR-200b* MIMAT0004571 Homo sapiens miR-200b* Targets (miRBase)

Match Rank:4
Score:0.71
Offset:-14
Orientation:forward strand
Alignment:--------------GTAAG---
TCCAATGCTGCCCAGTAAGATG

hsa-miR-550a* MIMAT0003257 Homo sapiens miR-550a* Targets (miRBase)

Match Rank:5
Score:0.71
Offset:-14
Orientation:forward strand
Alignment:--------------GTAAG---
ATGTGCCTGAGGGAGTAAGACA

hsa-miR-200a* MIMAT0001620 Homo sapiens miR-200a* Targets (miRBase)

Match Rank:6
Score:0.71
Offset:-14
Orientation:forward strand
Alignment:--------------GTAAG---
TCCAGCACTGTCCGGTAAGATG

hsa-miR-600 MIMAT0003268 Homo sapiens miR-600 Targets (miRBase)

Match Rank:7
Score:0.70
Offset:-17
Orientation:forward strand
Alignment:-----------------GTAAG-
GAGCAAGGCTCTTGTCTGTAAGT

hsa-miR-3678-5p MIMAT0018102 Homo sapiens miR-3678-5p Targets (miRBase)

Match Rank:8
Score:0.65
Offset:-13
Orientation:forward strand
Alignment:-------------GTAAG--
CACAGCAGAGTTTGTACGGA

hsa-miR-126 MIMAT0000445 Homo sapiens miR-126 Targets (miRBase)

Match Rank:9
Score:0.64
Offset:-16
Orientation:forward strand
Alignment:----------------GTAAG-
CGCATTATTACTCACGGTACGA

hsa-miR-487b MIMAT0003180 Homo sapiens miR-487b Targets (miRBase)

Match Rank:10
Score:0.64
Offset:-14
Orientation:forward strand
Alignment:--------------GTAAG---
AAGTGGATGACCCTGTACGATT