FastQCFastQC Report
Mon 16 Oct 2017
E743-input-1-mRNA_all.fq.clean_fq_reverse

Summary

[OK] Basic Statistics

Measure Value
Filename E743-input-1-mRNA_all.fq.clean_fq_reverse
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 47442522
Sequence length 16-147
%GC 45

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[WARN] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[WARN] Sequence Length Distribution

Sequence length distribution

[FAIL] Sequence Duplication Levels

Duplication level graph

[WARN] Overrepresented sequences

Sequence Count Percentage Possible Source
TGTGTGCCTAATACATGCATGTTGAACGGGATGTAGCAATACATTCAGTA 119723 0.25235378507070094 No Hit
CTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTG 94782 0.19978280244039304 No Hit
GTGGGCGTTGGAATATTGATGAGAGCTGCTCTTAGTACGAGAGGACCGGA 71553 0.15082039694264146 No Hit
GGCCGGTGTTCTTCAGGATCTGCTTGCTCACCATGGTTGTGGCCATTATC 66403 0.13996515615253338 No Hit
ACGGTGAAGAGACATGAGAGGTGTAGAATAAGTGGGAGGCCCCCGGCGCC 52555 0.11077615140274372 No Hit
GAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAAT 50666 0.106794491237207 No Hit

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TGCCT 8297095 1.8906972 5.187071 5