Information for 12-BCCCCCCAGN (Motif 8)


Reverse Opposite:

p-value:1e-20
log p-value:-4.656e+01
Information Content per bp:1.451
Number of Target Sequences with motif330.0
Percentage of Target Sequences with motif3.86%
Number of Background Sequences with motif1529.3
Percentage of Background Sequences with motif2.12%
Average Position of motif in Targets26.5 +/- 16.9bp
Average Position of motif in Background29.0 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

hsa-miR-361-3p MIMAT0004682 Homo sapiens miR-361-3p Targets (miRBase)

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:BCCCCCCAGN--------------
-TCCCCCAGGTGTGATTCTGATTT

hsa-miR-3150a-3p MIMAT0015023 Homo sapiens miR-3150a-3p Targets (miRBase)

Match Rank:2
Score:0.73
Offset:-13
Orientation:forward strand
Alignment:-------------BCCCCCCAGN
CCAACCTCGAGGATCTCCCCAG-

hsa-miR-4667-5p MIMAT0019743 Homo sapiens miR-4667-5p Targets (miRBase)

Match Rank:3
Score:0.72
Offset:-12
Orientation:forward strand
Alignment:------------BCCCCCCAGN
GGTTCTCCTTCTGCTCCCCAGT

hsa-miR-637 MIMAT0003307 Homo sapiens miR-637 Targets (miRBase)

Match Rank:4
Score:0.69
Offset:-14
Orientation:forward strand
Alignment:--------------BCCCCCCAGN
ACGCAGAGCCCGAAAGCCCCCAGT

hsa-miR-4731-5p MIMAT0019853 Homo sapiens miR-4731-5p Targets (miRBase)

Match Rank:5
Score:0.68
Offset:-11
Orientation:forward strand
Alignment:-----------BCCCCCCAGN-
CACACTCATGTGGCCCCCAGCA

hsa-miR-4700-5p MIMAT0019796 Homo sapiens miR-4700-5p Targets (miRBase)

Match Rank:6
Score:0.68
Offset:-12
Orientation:forward strand
Alignment:------------BCCCCCCAGN
ACACACTGTCCTCATCCCCAGA

hsa-miR-2355-5p MIMAT0016895 Homo sapiens miR-2355-5p Targets (miRBase)

Match Rank:7
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:BCCCCCCAGN------------
-ATCCCCAGATACAATGGACAA

hsa-miR-4665-5p MIMAT0019739 Homo sapiens miR-4665-5p Targets (miRBase)

Match Rank:8
Score:0.68
Offset:-14
Orientation:forward strand
Alignment:--------------BCCCCCCAGN
GCTCGCGCTCACGCGTCCCCCAG-

hsa-miR-3689c MIMAT0019007 Homo sapiens miR-3689c Targets (miRBase)

Match Rank:9
Score:0.67
Offset:-13
Orientation:forward strand
Alignment:-------------BCCCCCCAGN
ACCACAATATCACACCTCCCAG-

hsa-miR-3689b* MIMAT0018181 Homo sapiens miR-3689b* Targets (miRBase)

Match Rank:10
Score:0.67
Offset:-13
Orientation:forward strand
Alignment:-------------BCCCCCCAGN
ACCACAATATCACACCTCCCAG-