Biosynthesis of secondary metabolites - Reference pathway
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Reference pathway
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Category title
KEGG module
Carbohydrate and lipid metabolism
Other carbohydrate metabolism
M00012
Glyoxylate cycle
M00532
Photorespiration
M00565
Trehalose biosynthesis, D-glucose 1P => trehalose
Fatty acid metabolism
M00113
Jasmonic acid biosynthesis
Terpenoid backbone biosynthesis
M00095
C5 isoprenoid biosynthesis, mevalonate pathway
M00849
C5 isoprenoid biosynthesis, mevalonate pathway, archaea
M00096
C5 isoprenoid biosynthesis, non-mevalonate pathway
M00364
C10-C20 isoprenoid biosynthesis, bacteria
M00365
C10-C20 isoprenoid biosynthesis, archaea
M00366
C10-C20 isoprenoid biosynthesis, plants
M00367
C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Other terpenoid biosynthesis
M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
M00372
Abscisic acid biosynthesis, beta-carotene => abscisic acid
M00371
Castasterone biosynthesis, campesterol => castasterone
Nucleotide and amino acid metabolism
Serine and threonine metabolism
M00018
Threonine biosynthesis, aspartate => homoserine => threonine
Cysteine and methionine metabolism
M00021
Cysteine biosynthesis, serine => cysteine
M00368
Ethylene biosynthesis, methionine => ethylene
Branched-chain amino acid metabolism
M00019
Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00432
Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
Lysine metabolism
M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Histidine metabolism
M00026
Histidine biosynthesis, PRPP => histidine
Aromatic amino acid metabolism
M00022
Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate
M00023
Tryptophan biosynthesis, chorismate => tryptophan
M00024
Phenylalanine biosynthesis, chorismate => phenylalanine
M00040
Tyrosine biosynthesis, prephanate => pretyrosine => tyrosine
M00350
Capsaicin biosynthesis, L-Phenylalanine => Capsaicin
Cofactor and vitamin biosynthesis
M00125
Riboflavin biosynthesis, GTP => riboflavin/FMN/FAD
M00119
Pantothenate biosynthesis, valine/L-aspartate => pantothenate
M00121
Heme biosynthesis, glutamate => heme
M00846
Siroheme biosynthesis, glutamate => siroheme
M00847
Heme biosynthesis, archaea, siroheme => heme
M00114
Ascorbate biosynthesis, plants, glucose-6P => ascorbate
M00112
Tocopherol/tocotorienol biosynthesis
M00117
Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone
M00116
Menaquinone biosynthesis, chorismate => menaquinone
Secondary metabolism
Biosynthesis of secondary metabolites
M00039
Monolignol biosynthesis, phenylalanine / tyrosine => monolignol
M00137
Flavanone biosynthesis, phenylalanine => naringenin
M00138
Flavonoid biosynthesis, naringenin => pelargonidin
M00369
Cyanogenic glycoside biosynthesis, tyrosine => dhurrin
M00370
Glucosinolate biosynthesis, tryptophan => glucobrassicin
M00661
Paspaline biosynthesis, geranylgeranyl-PP + indoleglycerol phosphate => paspaline