Microbial metabolism in diverse environments - Reference pathway
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Reference pathway
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Category title
KEGG module
Energy metabolism
Carbon fixation
M00165
Reductive pentose phosphate cycle (Calvin cycle)
M00166
Reductive pentose phosphate cycle, ribulose-5P => glyceraldehyde-3P
M00167
Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P
M00168
CAM (Crassulacean acid metabolism), dark
M00169
CAM (Crassulacean acid metabolism), light
M00172
C4-dicarboxylic acid cycle, NADP - malic enzyme type
M00171
C4-dicarboxylic acid cycle, NAD - malic enzyme type
M00170
C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type
M00173
Reductive citrate cycle (Arnon-Buchanan cycle)
M00376
3-Hydroxypropionate bi-cycle
M00375
Hydroxypropionate-hydroxybutylate cycle
M00374
Dicarboxylate-hydroxybutyrate cycle
M00377
Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway)
M00579
Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
M00620
Incomplete reductive citrate cycle, acetyl-CoA => oxoglutarate
Nitrogen metabolism
M00175
Nitrogen fixation, nitrogen => ammonia
M00531
Assimilatory nitrate reduction, nitrate => ammonia
M00530
Dissimilatory nitrate reduction, nitrate => ammonia
M00529
Denitrification, nitrate => nitrogen
M00528
Nitrification, ammonia => nitrite
M00804
Complete nitrification, comammox, ammonia => nitrite => nitrate
Methane metabolism
M00567
Methanogenesis, CO2 => methane
M00357
Methanogenesis, acetate => methane
M00356
Methanogenesis, methanol => methane
M00563
Methanogenesis, methylamine/dimethylamine/trimethylamine => methane
M00358
Coenzyme M biosynthesis
M00608
2-Oxocarboxylic acid chain extension, 2-oxoglutarate => 2-oxoadipate => 2-oxopimelate => 2-oxosuberate
M00174
Methane oxidation, methanotroph, methane => formaldehyde
M00346
Formaldehyde assimilation, serine pathway
M00345
Formaldehyde assimilation, ribulose monophosphate pathway
M00344
Formaldehyde assimilation, xylulose monophosphate pathway
M00378
F420 biosynthesis
M00422
Acetyl-CoA pathway, CO2 => acetyl-CoA
Sulfur metabolism
M00176
Assimilatory sulfate reduction, sulfate => H2S
M00596
Dissimilatory sulfate reduction, sulfate => H2S
M00595
Thiosulfate oxidation by SOX complex, thiosulfate => sulfate
Carbohydrate and lipid metabolism
Central carbohydrate metabolism
M00004
Pentose phosphate pathway (Pentose phosphate cycle)
M00006
Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P
M00007
Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
M00580
Pentose phosphate pathway, archaea, fructose 6P => ribose 5P
M00008
Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
M00308
Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P
M00309
Non-phosphorylative Entner-Doudoroff pathway, gluconate/galactonate => glycerate
Other carbohydrate metabolism
M00373
Ethylmalonyl pathway
M00740
Methylaspartate cycle
Nucleotide and amino acid metabolism
Aromatic amino acid metabolism
M00533
Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate
M00545
Trans-cinnamate degradation, trans-cinnamate => acetyl-CoA
Other amino acid metabolism
M00033
Ectoine biosynthesis, aspartate => ectoine
Cofactor and vitamin biosynthesis
M00622
Nicotinate degradation, nicotinate => fumarate
M00550
Ascorbate degradation, ascorbate => D-xylulose-5P
M00836
Coenzyme F430 biosynthesis, sirohydrochlorin => coenzyme F430
Secondary metabolism
Aromatics degradation
M00538
Toluene degradation, toluene => benzoate
M00537
Xylene degradation, xylene => methylbenzoate
M00419
Cymene degradation, p-cymene => p-cumate
M00547
Benzene/toluene degradation, benzene => catechol / toluene => 3-methylcatechol
M00548
Benzene degradation, benzene => catechol
M00551
Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol
M00637
Anthranilate degradation, anthranilate => catechol
M00568
Catechol ortho-cleavage, catechol => 3-oxoadipate
M00569
Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA
M00539
Cumate degradation, p-cumate => 2-oxopent-4-enoate + 2-methylpropanoate
M00543
Biphenyl degradation, biphenyl => 2-oxopent-4-enoate + benzoate
M00544
Carbazole degradation, carbazole => 2-oxopent-4-enoate + anthranilate
M00418
Toluene degradation, anaerobic, toluene => benzoyl-CoA
M00541
Benzoyl-CoA degradation, benzoyl-CoA => 3-hydroxypimeloyl-CoA
M00540
Benzoate degradation, cyclohexanecarboxylic acid =>pimeloyl-CoA
M00534
Naphthalene degradation, naphthalene => salicylate
M00638
Salicylate degradation, salicylate => gentisate
M00624
Terephthalate degradation, terephthalate => 3,4-dihydroxybenzoate
M00623
Phthalate degradation, phthalate => protocatechuate
M00636
Phthalate degradation, phthalate => protocatechuate
M00810
Nicotine degradation, pyridine pathway, nicotine => succinate semialdehyde
M00811
Nicotine degradation, pyrrolidine pathway, nicotine => succinate semialdehyde