Propinquity output documentation. The top-level docs are here.
The labelled_supertree directory holds the final solution trees, generated by reattaching the parts of the taxonomy which were not covered by any input tree (from ../cleaned_ott/index.html) to the grafted solution (see ../grafted_solution/index.html).
Next step: Annotate the tree; see ../annotated_supertree/index.html
Results
The input grafted solution had 3 leaves and 2 forking nodes (and 0 monotypic nodes).
The input cleaned taxonomy had 32 leaves and 20 forking nodes (and 65 monotypic nodes).
29 leaves were added to create the solution. 0 taxa were rejected.
The files of interest in this directory are (for large files, the link will download the file):
Non-monophyletic taxa: There were 0 non-monophyletic taxa