Propinquity output documentation. The top-level docs are here.
The phylo_input directory holds the files that are used to extract the ranked list of
study+tree IDs for the phylogenetic inputs to the pipeline.
Next step: Copy the NexSON files as a snapshot.
See ../phylo_snapshot/index.html
for details.
Results:
- collections.txt is simply a copy of the configuration setting that list the identifiers for the collections in order
- rank_collection.json is a collection JSON that is the concatenation of the collections (which where found in the phylesystem shard
described in the configuration documentation.
- study_tree_pairs.txt is list of the study ID + tree ID in a terse syntax that is appropriate for file names within this propinquity pipeline.
- These are the 2 trees used as inputs for this run (click any link to view a tree in a new window):
- tree 1 of study xx_1
- tree 1 of study xx_2
- index.json is a JSON representation of the summaries used when writing this page.