Propinquity output documentation. The top-level docs are here.
The exemplified_phylo directory holds the results of the last step of the input preprocessing for the supertree pipeline. All of the leaves in these trees are mapped to terminal taxa in the taxonomy. This is accomplished by taking the cleaned input trees (see ../cleaned_phylo/index.html and ../cleaned_ott/index.html) and choosing exemplar taxa to represent at for each tip that is mapped to a non-terminal taxon. See for details on the procedure.
Next step: Decomposition of inputs into subproblems. See ../subproblems/index.html for details.Results: Below you will find tabular or itemized listings of:
Exemplified tree files:
The following source input trees were affected by the exemplar step:
study_id + tree_id key | OTT IDs exemplified |
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The following table shows the exemplars for each of the 0 OTT Ids that were exemplified:
higher taxon OTT ID | exemplars used |
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