#! Input file to measure the differentially expressed gene(DEG)-enrichment in annotation Biological Process GO terms by the right sided Fisher exact test. ## Term: GO term name and id, format like 'Biological Process: TERM NAME (TERM ID);'. ## mNum: DEG number in specified annotation Biological Process GO term. ## nNum: Unigene number in specified annotation Biological Process GO term. ## MNum: DEG number in all annotation Biological Process GO term. ## NNum: Unigene number in all annotation Biological Process GO term. ## GIDs: DEG IDs in specified annotation Biological Process GO term, separated by ';'. #Gene_Ontology_term mNum nNum MNum NNum GIDs P-value Corrected_P-value Biological Process: MAPK cascade (GO:0000165); 15 99 16 31163 AsMADS10;AsMADS4;AsMADS11;AsMADS15;AsMADS1;AsMADS16;AsMADS2;AsMADS14;AsMADS12;AsMADS5;AsMADS3;AsMADS9;AsMADS8;AsMADS7;AsMADS6 1.77629422541376e-37 5.15125325369992e-36 Biological Process: positive regulation of transcription by RNA polymerase II (GO:0045944); 15 146 16 31163 AsMADS10;AsMADS4;AsMADS11;AsMADS15;AsMADS1;AsMADS2;AsMADS16;AsMADS12;AsMADS14;AsMADS5;AsMADS3;AsMADS9;AsMADS8;AsMADS7;AsMADS6 8.73677694564968e-35 1.2668326571192e-33 Biological Process: cell differentiation (GO:0030154); 8 455 16 31163 AsMADS3;AsMADS1;AsMADS8;AsMADS2;AsMADS16;AsMADS12;AsMADS5;AsMADS14 2.25356400207488e-11 2.17844520200572e-10 Biological Process: flower development (GO:0009908); 5 520 16 31163 AsMADS14;AsMADS16;AsMADS12;AsMADS11;AsMADS3 4.76138208616028e-06 3.4520020124662e-05 Biological Process: floral meristem determinacy (GO:0010582); 2 13 16 31163 AsMADS1;AsMADS5 1.92136672533261e-05 0.000111439270069291 Biological Process: specification of stamen identity (GO:0010097); 2 18 16 31163 AsMADS2;AsMADS8 3.76319489938659e-05 0.000181887753470352 Biological Process: specification of floral organ identity (GO:0010093); 2 37 16 31163 AsMADS5;AsMADS1 0.000162880260649811 0.000674789651263504 Biological Process: floral whorl structural organization (GO:0048459); 1 2 16 31163 AsMADS5 0.00102661163276974 0.00372146716879029 Biological Process: seed growth (GO:0080112); 1 2 16 31163 AsMADS5 0.00102661163276974 0.00330797081670248 Biological Process: embryo sac central cell differentiation (GO:0009559); 1 3 16 31163 AsMADS9 0.00153954684710744 0.00446468585661158 Biological Process: seed development (GO:0048316); 2 121 16 31163 AsMADS7;AsMADS5 0.00173146568684868 0.00456477317441924 Biological Process: meristem determinacy (GO:0010022); 1 4 16 31163 AsMADS5 0.00205223514140718 0.00495956825840068 Biological Process: floral organ formation (GO:0048449); 1 4 16 31163 AsMADS5 0.00205223514140718 0.00457806300775447 Biological Process: specification of carpel identity (GO:0010094); 1 6 16 31163 AsMADS5 0.00307687141364543 0.00637351935683697 Biological Process: stamen formation (GO:0048455); 1 7 16 31163 AsMADS5 0.00358881961331747 0.00693838458574711 Biological Process: floral whorl morphogenesis (GO:0048457); 1 8 16 31163 AsMADS5 0.00410052133645789 0.00743219492232992 Biological Process: pollen maturation (GO:0010152); 1 13 16 31163 AsMADS4 0.00665533667900109 0.0113532213935901 Biological Process: integument development (GO:0080060); 1 14 16 31163 AsMADS5 0.00716556186724149 0.0115445163416668 Biological Process: specification of floral organ number (GO:0048833); 1 18 16 31163 AsMADS5 0.00920400670227828 0.0140482207561089 Biological Process: regulation of meristem development (GO:0048509); 1 23 16 31163 AsMADS5 0.0117465452047956 0.0170324905469536 Biological Process: regulation of pollen tube growth (GO:0080092); 1 32 16 31163 AsMADS4 0.0163077070122057 0.0225201668263794 Biological Process: positive regulation of programmed cell death (GO:0043068); 1 43 16 31163 AsMADS7 0.0218556589744119 0.028809732284452 Biological Process: transcription, DNA-templated (GO:0006351); 5 3375 16 31163 AsMADS3;AsMADS13;AsMADS12;AsMADS5;AsMADS8 0.0233397592678475 0.0294283921203294 Biological Process: floral organ development (GO:0048437); 1 55 16 31163 AsMADS5 0.0278745076405328 0.0336816967323105 Biological Process: starch biosynthetic process (GO:0019252); 1 93 16 31163 AsMADS7 0.04670593365404 1 Biological Process: embryo sac development (GO:0009553); 1 145 16 31163 AsMADS5 0.0719215444203223 1 Biological Process: pollen development (GO:0009555); 1 283 16 31163 AsMADS4 0.1358419490434 1 Biological Process: positive regulation of transcription, DNA-templated (GO:0045893); 1 297 16 31163 AsMADS5 0.142090696182774 1 Biological Process: multicellular organism development (GO:0007275); 1 572 16 31163 AsMADS3 0.256571255509319 1