#NEXUS [written Wed Jul 17 11:00:02 ACST 2024 by Mesquite version 3.81 (build 955) at DESKTOP-PMHVEMU/192.168.1.15] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=72; TAXLABELS Africanaspis_doryssa Alienacanthus_malkowskii Amazichthys_trinajsticae Antineosteus_lehmani Arctolepis_decepiens Brachyosteus_dietrichi Bruntonichthys_multidens Bryantolepis Buchanosteus_confertituberculatus Bullerichthys_Fascidens Camuropiscis_connicus Coccosteus_cuspidatas Compagopiscis_croucheri Dhanguura_johnstoni Dickosteus_threiplandi Dicksonosteus_arcticus_ Dinichthys_herezeri Dunkleosteus_ambylodoatus Dunkleosteus_raveri Dunkleosteus_terreli Eastmanosteus_calliaspiis Eastmanosteus_pustulosus Elvaspis_tuberculata Fallocosteus_turneri Gemuendenaspis_angusta Golshanichthys_asiatica Goodradigbeeon_australianum Gorgonichthys_clarki Groenlandaspis_antarcticus Groenlandaspis_mirabilis Groenlandaspis_howittensis Groenlandaspis_riniensis Gymnotrachelus_hydei Hadrosteus_rapax Harrytoombsia_elegans Heintzichthys_gouldii Heintzosteus_brevis Heterosteus_ingens Holonema_westolli Homostius_sulcatus Incisoscutum_ritchiei Incisoscutum_sarahae Janiosteus_timanicus Kendrickichthys_cavernosus Kiangosteus_yohii Kujdowniaspis_podolica_ Latocamurus_coulthardi Lehmanosteus_hyperboreus Mcnamaraspis_kaprios Melanomontanosteus_occitanus Millerosteus_minor Mulgaspis_evansorum Pachyosteus_bulla Panxiosteus_oculus Parabuchanosteus_murrumbidgeenis Plourdosteus_canadensis Protitanichthys_rockportensis Rachiosteus_pterygiatus Rhinosteus_parvulus Rolfosteus_canningensis Stenosteus_angustopectus Tapinosteus_heintzi Tiaraspis_subtilis Torosteus_pulchellus Torosteus_tuberculatus Trematosteus_fontanellus Tubonasus_lennardensis Turrisaspis_elektor Watsonosteus_fletti Westralichthys_uwagedensis Xiangshuiosteus_wui Yinosteus_major ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=133; FORMAT DATATYPE = STANDARD RESPECTCASE GAP = - MISSING = ? SYMBOLS = " 0 1 2 3"; CHARSTATELABELS 122 ginglymoid_, 123 APi_PPi, 124 cu.so, 125 ADL_PL_contact, 126 lc_flexure, 127 dlr, 128 ADL_PDL_symph, 129 ab, 130 sg._overlap, 131 v.sc, 132 infra_spinal_lamina_AVL, 133 AV ; MATRIX Africanaspis_doryssa ????00-1111?100?12-1001?0{0 1}{0 1}001110101000100001????011??????????????????????00001000111????012001-???00???0??-0?????0100-1?1100212????? Alienacanthus_malkowskii ????01010121100?12-1100?1--20001100????????????????101?1????110001?10????120????100110??11?0???1???01?0?1??00????????????100????????? Amazichthys_trinajsticae ????1001002?102??2-0101?0--200011000?1001?0?0?????????????????001?????????1000{0 1}0???11?????1??11?????1???1??00?????0000-0?10??000????? Antineosteus_lehmani 100000-10000012?1010011100-0110101000????0?????????10010??1100100?????????0010100000?????112001-00?00000100000??00000??1110?10000??00 Arctolepis_decepiens ?20000-01110002002-010100--00011010100010000111010110000??1000???00???0000000010000010-0?012001-001000000?--0??0??0000-11100001111010 Brachyosteus_dietrichi 110010-001211100110010110--2011111?000?-10-00-???-0111111?100110010101????--010000-10???0111201-111011?1101011??1??00100?1001000?0?00 Bruntonichthys_multidens ?0?000-????????11??????100-20???10210??????????0???111?1??11??10100??1301?1?????01-?00-?011???????????0?????0010??1?0???100?0000?0011 Bryantolepis ????10-1010?002?0000111?0??0000001000001001011?0?0110100??????????????000000001000001?????122--0???00?0?0???0??00?0000?0?00?0000?0011 Buchanosteus_confertituberculatus 1201????0010012?001001110??0111101???001000011???121??10001100????????1??0001100000110-??111001-0-11000011000?0001??00-0?10112000???? Bullerichthys_Fascidens 11?010-?002??1??????001?0?-1011110????11????10100??11????????010100101110100???????110-?0?1??01-01???10?10000010????????11??????????? Camuropiscis_connicus 1111010000211111?11?000101110111002101?00?0111110??111011??00110100101????10100000110????1122--00??011-0100000???10000-001001-0000110 Coccosteus_cuspidatas 100020-0020112011201011100-101110121100100011110102110001?1100101001110011011101001110-00112101-0110110010000010010000-01101100000110 Compagopiscis_croucheri 111120-00021111012-0010000-2011100210011001111111021000011110010101101111110000000111????1121--0010011-010000010110000-001011-0000100 Dhanguura_johnstoni ??1120-010??012?12-0011?0??01?0101????????????????????????????????????????00???????0??????1??01-?1100100????0???0????????1??????????? Dickosteus_threiplandi ????20-0120?220?12-101100??1011101?110?????????????11?0????100????????????01???101111????112001-???01???1??00?????0000-0?1011?00??010 Dicksonosteus_arcticus_ 120000-1010000200010111001100011010100010000111011110000??10001??????00000000010000010-??012000---10000001--0?00000000-11100001111010 Dinichthys_herezeri 1?????????????????????????????????????????????????????????????10111101?????????????????1??1?????1???????1?1??1??????0????????????0??? Dunkleosteus_ambylodoatus ??????????21?????????????????????????????????????????????????????????????????????????10??11?????0???????1000????????1???????????????? Dunkleosteus_raveri ?00220-01???????12-1?1??00-00???11???????????????????1???????0????????0??00????????1111??11??????100110????00?101????????10?????????? Dunkleosteus_terreli 100210-01121000112-1111100-000110120000111-010101-1101011?1100100201110100000??0001111101100001-01001101100001101110010001001?0000000 Eastmanosteus_calliaspiis 101020-01201120112-0111000-101110121000111-010111-110101111100101(1 2)01111101000010001110-0?112101-0100110010000110111001000101100000100 Eastmanosteus_pustulosus 10?020-00201220?100011110??00?1101200????????????????????????010???1???????001?1???11????111201-01?01?0?1??00???1?100????10?1000????? Elvaspis_tuberculata ??????????????????????????????????01001100001?1?111?????????????????????????1010?????????01????????????????-??????0100-111??0010??010 Fallocosteus_turneri 111101000201111111100001011101111021011000111?1111211010???00110000101????00100000010????1121--0???01?-?1??000????0000-0010?1-0000000 Gemuendenaspis_angusta ?????????00?01?????00111????01110?0100010?0?1?????11???????????????????????0??000011?????11??01-????????1??00?????0100-01101?-00??110 Golshanichthys_asiatica 1??0?????201220?1??01?1?00-?011101???????????????????1???????01002????????00???????11???1111001-01???1001000????1????????10??-??????? Goodradigbeeon_australianum ????00--???????1?0???????0-01???????????0???1?101??1?1?0????001000???0??????????010?????0?1????????10????????0??????????1101???????1? Gorgonichthys_clarki 110010-10101000?12-011000??101111120000-1?-?0-???-???????????01001110?????100??0???110-1?1001--011001101101001??11???????10?1?00000?0 Groenlandaspis_antarcticus ????00-1111?112?12-000100--0011101??00?1?0001??0?01?0?????????????????????000010???1?????012001-???00?0?0??-0?????0100-1111?020211010 Groenlandaspis_mirabilis ??????????1011?????1?0????????????010???????1?1?1??????????????????????????0001????1?????01?????0??????????-??????0100-1?1???202????? Groenlandaspis_howittensis 120000-11110112012-100110--0011101?100010000111010110100???0000?000???????00001000{0 1}110-00012001-00?000000?0-0??0??0100-11111020211010 Groenlandaspis_riniensis ????00-1111?102012-100110--0011101?1000100001?1??011?1????????????????????00001000111????012001-???01?0?0??-0?????0100-1?10?0212????? Gymnotrachelus_hydei 100010-00021000-12-100010--201111010000-11-00-???-01?1?0??00?0111000-03???200000000100-001011--1111011-?1010011111100100?1001-0000??0 Hadrosteus_rapax ????20-1012?010?12-0101000-1011110?00???1???1??????10110???10010011102????100??000-110-?0101211-???01?-?1??001?????00100?1001???????? Harrytoombsia_elegans 101120-00001110012-0000000-10110012110110?1111101021?10011?100101001010110001000001110-001121--00100110010000010110000-011001-0000110 Heintzichthys_gouldii 11?010-00121002-12-210010--200111020000-10-10-010-1101001111101001110101?0100000000110-101011--1111011-?101001101?100100010?1-0000000 Heintzosteus_brevis 120000-01110002002-010100--000010101000100001110101?0?????????????????0000000010???01?-??012001-0010000001--0??0000000-1110?001111010 Heterosteus_ingens 1001??-??12?002?12-001110??0111101100???1?-00??????10010????00????????????00101000111????110011-???01?1?10010?????101110?1001000???00 Holonema_westolli 020020-01110110?02-000000??100110111001100101110101000000010000???00?0????00111110011????0120--0-010000010--0-??000100-00100110000100 Homostius_sulcatus 100000-10000012?12-0001100-01001-100000110-?101?1-?10010???100100?????????00101001001????111011-0010001?100000??0?0000-?110010000??00 Incisoscutum_ritchiei 111120-0000111001110010001010011012100111???11101-010000111100101001011011110001000110-0?1122--00100110010100010110000-001001-0000100 Incisoscutum_sarahae 111120-00021110011100100010100110121?0111???11101-01000011110010100101101111000100011????1111--00100110010?0001011?000-001001-0000100 Janiosteus_timanicus ???????012??22?????0000?0???00110????????????????????????????0????????????01???????1?????1111--2???01???1??00????????????10?????????? Kendrickichthys_cavernosus 10?010-1?22?1???12-1?0110??101?110???0??1???10100??1?1?1???1?0100????1????010???00010???0111201-0100110?100000??1???0100110?????????? Kiangosteus_yohii ???????????????????????????????????10????1??1?1?1???????????????01??-10101???0?1?????111??1???????????????????101??00100???????0??100 Kujdowniaspis_podolica_ 020000-10120002?001001000110000100010001000011101111000????000????????0???00001000001????0120--0--1000-001--0?00000100-11000000000011 Latocamurus_coulthardi 111100-1022111?01100000101110011102100110?011????121?01011?001100001013111101000001100-0?1122--1010011-010000010110000-001001-0000000 Lehmanosteus_hyperboreus 120000-01120002?000001000110000101????????????????????????????????????0???0????????01?????112--0--?0001000--0??000???????00?????????? Mcnamaraspis_kaprios 101120-00001100012-0000000-10111012100110011111110210100111100101001010110101000001110-001121--00100110010000010110000-001001-0000100 Melanomontanosteus_occitanus 110020-00?21????11100011?0-201?110??????1?-??????-?11111??????100????011?12?????001??????10200?-111011?11010?11111?00100?10?1?0?????? Millerosteus_minor 1???20-1020122011011011000-10111011110110001111011211100???1011???????????00110100111???0112200-0??01100100000????0000-0?100100000110 Mulgaspis_evansorum 020000-11110002002-000110110001101?1000100001110101?0???????????????????00000010???01?-??012001-0010000001--0???000100-1110?010211011 Pachyosteus_bulla 110010-00121012112-1100?10-2011110?????-1?-??????-?1?100????1?1???????1?0020????0??110-??1012--0?1?011-110100?1011??0????1001?00????? Panxiosteus_oculus 110120-00211220?12-0100100-00011012?1?????????101??10??1?????0????01010??101???1001110-0?1111--201?0110010000?1011000????10????0????? Parabuchanosteus_murrumbidgeenis 120100--0000012?001001110??0110101?1100??0001?????????????????????????1???001010????1????111001-0-11000011000?0?010000-0?1011100????? Plourdosteus_canadensis 1?1120-01201220?12-1100000-00110012110110111111110210111??110010120101????011101001110-001111--201001100100000?1100000-01101100000110 Protitanichthys_rockportensis 110020-01211220112-1111000-0011101?11??????????0??????????????????????????01?11????1?????111001-?110110?1??00???0??0?0-?110?1000????? Rachiosteus_pterygiatus ????20-0100??20?12-100110??2011101200???1??????????1?????????01???????????001??1???1?????102000-???01???1??00?????000100?1001?00?0??0 Rhinosteus_parvulus 1???20-0012?012?1112101110-2011010?0000-1?-00-???-?1?11????011111????2????20000000111????102101-???01?-?1??001?????001000100?-??????? Rolfosteus_canningensis 11110110000110101110000001110111002101100-11111??021101011?00110??0101????101101000100-0?1121--0010011-0100000??110000-00100100000000 Stenosteus_angustopectus 110010-00121002-12-0101??--201111010000-10-10-???-01?1?01?0010111????0????2?000000-1?0-?0101111-?1?011-?1??001?111100100?1001-0000000 Tapinosteus_heintzi 11??20-00021110112-0000000-2011111?00???1??????????1010?11???0???1010?????0??????01??0--?11??--10??0110010000??11??00????100????????? Tiaraspis_subtilis ????00-0110?200?12-100100??100010101000100001110101?0?????????????????????000010???11????012000-???01?0?0??-0?????0100-1011?011211010 Torosteus_pulchellus 111120-000012010100000000101011101?1?01100?111101?210?001111001011010?0111101010001110-001121--00100110010000010110000-01101100000110 Torosteus_tuberculatus 111120-00001200012-0000000-1011101?1101100?111101?2101001??100101001010111101011001110-001121--00100110010000010110000-01101100000010 Trematosteus_fontanellus ?0?120-00021111?12-000100??2011110?????????????????1???????????????1??1110?00??????1?0-??11??00-?1?011-110?01?1111??0????10?????????? Tubonasus_lennardensis 11??0110022111101110000?01110111102??1100?11111?1021?01????00110??0101?00?10100000010-???1121--0010011-0100000??110000-001001-0000000 Turrisaspis_elektor 020000-11110112?12-100100--00011010100???0?01????0??0????????????00???1??0000010???1?0-0?012101--0?0000?0?--0?00000100-1111?02121?010 Watsonosteus_fletti ????20-012??220?12-201100??10101011100?100111????0211?0????100100?????????01110101111???0112001-???01???1??000????0000-0?1011000?0110 Westralichthys_uwagedensis ?002?????00122??1??00?100??0011101???????????????????1??????00????????????00????????1????100001-01???1001000????1???0????1??????????? Xiangshuiosteus_wui ????00-1100?122?12-001100??0011101????????????????????????????????????????00???????1?????112001-???00?0?1??00????????????10?????????? Yinosteus_major 10010??0??21????1???1??????01????1100???1?-?????????????????????????????????1??0?????????11?????010??11010010??011101110?10????00???0 ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 133; TYPESET charord = unord: 1- 3 5- 13 15- 19 21- 34 36- 50 52- 74 76- 91 94- 125 127 129- 133, ord: 4 14 20 35 51 75 92- 93 126 128; END; BEGIN PAUP; OUTGROUP Kujdowniaspis_podolica Lehmanosteus_hyperboreus Bryantolepis / only; LOG start file = finalanalysis; SET ROOT = OUTGROUP OUTROOT = monophyl CRITERION = parsimony; ASSUME TYPESET = charord; HSEARCH addseq = random nreps = 1000 nchuck = 1000 chuckscore = 1; SAVETREES File = allbest.trees root = yes brlens = yes; CONTREE / treefile = strictcon.tree root = outgroup; CONTREE / treefile = 50maj.trees strict = no majrule = yes percent = 50 root = outgroup outroot = monophyl; DESCRIBETREES 1 / plot = cladogram opt = deltran apolist = yes; BOOTSTRAP nreps = 100 conlevel = 50 grpfreq = yes keepall = yes brlens = yes treefile = bootstrap100.trees replace = yes search = heuristic / addseq = random nreps = 50 nchuck = 1000 chuckscore = 1; SAVETREES from = 1 to = 1 file = bootstrap_consensus.tree savebootp = nodelabels; DESCRIBETREES 1 / plot = cladogram opt = deltran apolist = yes; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1- 133; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1721179802617; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3264990656373265500; tell It; setDefaultOrder 109 65 64 0 61 1 71 2 3 4 5 6 7 8 10 9 11 12 13 14 15 16 74 18 19 20 21 22 23 78 60 101 24 25 26 27 62 28 29 30 31 32 33 34 35 36 37 70 38 39 40 67 41 42 43 44 45 46 47 48 49 50 69 52 51 53 54 55 56 57 58 59; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4615616795687909398; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 131 121 122 124 130 127 125 135 126 139 129 132; 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