IQ-TREE multicore version 2.2.2.6 COVID-edition for Mac OS X 64-bit built May 27 2023 Developed by Bui Quang Minh, James Barbetti, Nguyen Lam Tung, Olga Chernomor, Heiko Schmidt, Dominik Schrempf, Michael Woodhams. Host: compute-76-10 (AVX512, FMA3, 1007 GB RAM) Command: iqtree2 -s UCE.phy -p modelsDNA.nex -o Scomber_scombrus -nt 8 -nstop 2000 -pers 0.2 -cptime 20 -pre DNA_run_00 Seed: 196724 (Using SPRNG - Scalable Parallel Random Number Generator) Time: Tue Nov 7 09:00:35 2023 Kernel: AVX+FMA - 8 threads (128 CPU cores detected) Reading partition model file modelsDNA.nex ... Reading alignment file UCE.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences Alignment has 32 sequences with 514958 columns, 201323 distinct patterns 90856 parsimony-informative, 100118 singleton sites, 323984 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.00808544 secs using 764.6% CPU 1 Eleutheronema_rhadinum 18.61% failed 0.00% 2 Filimanus_perplexa 25.49% passed 26.36% 3 Filimanus_sealei 28.13% passed 85.34% 4 Lates_calcarifer 19.09% passed 72.73% 5 Lepomis_cyanellus 19.74% failed 0.00% 6 Leptobrama_muelleri 21.11% failed 1.70% 7 Leptomelanosoma_indicum 37.73% failed 0.00% 8 Micropogonias_undulatus 44.82% failed 0.00% 9 Mugil_curema 21.97% failed 0.00% 10 Parapolynemus_verekeri 49.86% failed 0.00% 11 Pareques_acuminatus 32.73% failed 1.91% 12 Polydactylus_approximans 19.42% passed 10.17% 13 Polydactylus_malagasyensis 20.24% passed 29.54% 14 Polydactylus_microstomus 27.93% failed 0.07% 15 Polydactylus_multiradiatus 89.88% failed 0.00% 16 Polydactylus_nigripinnis 53.22% failed 0.04% 17 Polydactylus_octonemus 39.88% passed 8.11% 18 Polydactylus_opercularis 26.34% passed 85.07% 19 Polydactylus_plebeius 39.69% failed 0.00% 20 Polydactylus_quadrifilis 32.95% failed 0.00% 21 Polydactylus_sexfilis 25.23% failed 0.00% 22 Polydactylus_sextarius 20.61% passed 11.56% 23 Polydactylus_virginicus 17.74% passed 10.07% 24 Polynemus_aquilonaris 25.93% failed 0.00% 25 Polynemus_melanochir 19.17% failed 0.00% 26 Polynemus_multifilis 23.50% failed 0.00% 27 Psettodes_erumei 41.33% failed 0.00% 28 Rheocles_wrightae 22.60% failed 0.00% 29 Scomber_scombrus 22.50% failed 0.00% 30 Scophthalmus_aquosus 34.11% failed 0.00% 31 Sphyraena_barracuda 32.89% failed 0.00% 32 Lyopsetta_exilis 32.08% failed 0.00% WARNING: 2 sequences contain more than 50% gaps/ambiguity **** TOTAL 30.83% 23 sequences failed composition chi2 test (p-value<5%; df=3) Loading 567 partitions... Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000213981 secs using 88.79% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000195602 secs using 99.69% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000200431 secs using 99.29% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000209901 secs using 89.09% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000211072 secs using 89.54% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000206701 secs using 99.18% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000232412 secs using 89.5% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000218132 secs using 3271% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000206021 secs using 99.5% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000197262 secs using 99.36% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000212251 secs using 99.41% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Reading alignment file Mitochondrial.phy ... Phylip format detected Alignment most likely contains DNA/RNA sequences WARNING: 2 sites contain only gaps or ambiguous characters. Alignment has 44 sequences with 14572 columns, 8419 distinct patterns 7556 parsimony-informative, 1205 singleton sites, 5811 constant sites Gap/Ambiguity Composition p-value Analyzing sequences: done in 0.000204402 secs using 99.31% CPU 1 Eleutheronema_rhadinum 2.64% failed 1.65% 2 Eleutheronema_tetradactylum 3.02% passed 6.04% 3 Leptomelanosoma_indicum 3.18% failed 1.67% 4 Polydactylus_multiradiatus 3.21% failed 0.01% 5 Polydactylus_nigripinnis 3.23% failed 0.00% 6 Polynemus_aquilonaris 3.24% failed 0.00% 7 Polynemus_multifilis 3.27% failed 0.00% 8 Polynemus_paradiseus 3.27% failed 0.02% 9 Polynemus_melanochir 3.27% passed 16.60% 10 Polydactylus_approximans 3.18% passed 5.44% 11 Polydactylus_octonemus 3.28% failed 0.67% 12 Polydactylus_virginicus 3.28% failed 2.03% 13 Polydactylus_macrophthalmus 3.35% failed 0.00% 14 Polydactylus_macrochir 2.75% passed 81.41% 15 Polydactylus_quadrifilis 3.04% failed 0.00% 16 Polydactylus_bifurcus 3.06% passed 66.42% 17 Polydactylus_plebeius 2.98% failed 3.81% 18 Polydactylus_sexfilis 2.90% failed 1.31% 19 Parapolynemus_verekeri 2.77% passed 81.08% 20 Polydactylus_malagasyensis 3.25% passed 8.77% 21 Polydactylus_sextarius 3.25% passed 11.62% 22 Polydactylus_microstomus 3.23% passed 39.47% 23 Polydactylus_opercularis 3.08% failed 4.80% 24 Lyopsetta_exilis 3.21% passed 37.92% 25 Scophthalmus_aquosus 2.90% failed 0.00% 26 Filimanus_perplexa 3.21% failed 0.00% 27 Filimanus_sealei 3.40% failed 0.01% 28 Filimanus_xanthonema 3.37% failed 0.00% 29 Leptobrama_muelleri 20.50% failed 0.06% 30 Sphyraena_barracuda 2.96% failed 1.30% 31 Lepomis_cyanellus 3.48% passed 83.04% 32 Micropogonias_undulatus 3.28% passed 6.54% 33 Pareques_acuminatus 3.34% passed 40.00% 34 Scomber_scombrus 3.18% failed 2.38% 35 Pentanemus_quinquarius 3.09% passed 42.52% 36 Psettodes_erumei 3.19% failed 0.00% 37 Galeoides_decadactylus 3.11% passed 25.60% 38 Lates_calcarifer 2.72% passed 5.26% 39 Mugil_curema 3.38% failed 1.32% 40 Rheocles_wrightae 51.59% failed 0.00% 41 Polydactylus_longipes 95.51% passed 11.62% 42 Polydactylus_mullani 95.51% failed 1.33% 43 Polydactylus_oligodon 95.53% failed 0.58% 44 Filimanus_similis 95.70% passed 7.32% WARNING: 5 sequences contain more than 50% gaps/ambiguity **** TOTAL 13.04% 26 sequences failed composition chi2 test (p-value<5%; df=3) Subset Type Seqs Sites Infor Invar Model Name 1 DNA 30 519 96 271 GTR+G Subset1 2 DNA 32 1371 17 1313 GTR+G Subset2 3 DNA 32 1542 393 730 GTR+G Subset3 4 DNA 32 854 262 351 GTR+G Subset4 5 DNA 32 2377 169 1980 GTR+I+G Subset5 6 DNA 28 361 77 195 GTR+G Subset6 7 DNA 32 2689 150 2230 GTR+I+G Subset7 8 DNA 31 1397 462 439 GTR+G Subset8 9 DNA 31 2507 221 1909 GTR+I+G Subset9 10 DNA 30 204 51 110 GTR+G Subset10 11 DNA 32 1916 156 1572 GTR+I+G Subset11 12 DNA 32 229 59 113 GTR+I+G Subset12 13 DNA 31 662 177 285 GTR+G Subset13 14 DNA 32 466 88 262 GTR+G Subset14 15 DNA 31 654 58 501 GTR+I+G Subset15 16 DNA 31 492 170 188 GTR+G Subset16 17 DNA 32 3030 274 2346 GTR+I+G Subset17 18 DNA 32 1122 342 471 GTR+G Subset18 19 DNA 32 933 56 805 GTR+I+G Subset19 20 DNA 31 841 381 221 GTR+G Subset20 21 DNA 26 191 44 92 GTR+G Subset21 22 DNA 31 1922 463 942 GTR+G Subset22 23 DNA 31 1843 87 1628 GTR+I+G Subset23 24 DNA 30 501 133 273 GTR+G Subset24 25 DNA 31 998 106 822 GTR+I+G Subset25 26 DNA 29 165 100 31 GTR+I+G Subset26 27 DNA 31 1181 193 727 GTR+G Subset27 28 DNA 31 643 18 594 GTR+I+G Subset28 29 DNA 29 217 92 47 GTR+G Subset29 30 DNA 31 160 42 62 GTR Subset30 31 DNA 32 1973 70 1746 GTR+G Subset31 32 DNA 32 241 67 106 GTR+G Subset32 33 DNA 31 2994 942 1201 GTR+G Subset33 34 DNA 32 2603 73 2369 GTR+I+G Subset34 35 DNA 32 3578 535 2314 GTR+I+G Subset35 36 DNA 31 2163 739 811 GTR+G Subset36 37 DNA 31 617 79 487 GTR+I+G Subset37 38 DNA 31 405 151 163 GTR+G Subset38 39 DNA 31 2430 715 1002 GTR+G Subset39 40 DNA 31 133 71 28 GTR+G Subset40 41 DNA 31 2669 400 1756 GTR+I+G Subset41 42 DNA 31 1097 121 823 GTR+I+G Subset42 43 DNA 24 544 151 188 GTR+G Subset43 44 DNA 31 1698 758 376 GTR+G Subset44 45 DNA 32 3668 226 3010 GTR+I+G Subset45 46 DNA 31 1577 447 730 GTR+G Subset46 47 DNA 32 1757 186 1390 GTR+I+G Subset47 48 DNA 29 89 20 24 GTR Subset48 49 DNA 32 2228 464 1126 GTR+G Subset49 50 DNA 26 675 121 450 GTR+I+G Subset50 51 DNA 22 54 35 9 GTR+G Subset51 52 DNA 30 1023 168 613 GTR+I+G Subset52 53 DNA 32 2148 514 973 GTR+G Subset53 54 DNA 32 1489 29 1397 GTR+I+G Subset54 55 DNA 28 579 139 265 GTR+G Subset55 56 DNA 31 1250 346 533 GTR+G Subset56 57 DNA 32 2123 79 1880 GTR+I+G Subset57 58 DNA 30 190 42 82 GTR+G Subset58 59 DNA 31 915 141 551 GTR+G Subset59 60 DNA 31 1848 207 1292 GTR+I+G Subset60 61 DNA 31 58 32 12 GTR+G Subset61 62 DNA 31 2308 198 1852 GTR+I+G Subset62 63 DNA 31 946 343 288 GTR+G Subset63 64 DNA 31 2683 161 2209 GTR+I+G Subset64 65 DNA 31 502 121 278 GTR+I+G Subset65 66 DNA 31 913 15 858 GTR+I+G Subset66 67 DNA 31 170 53 68 GTR+G Subset67 68 DNA 29 582 45 388 GTR+G Subset68 69 DNA 31 1431 314 712 GTR+G Subset69 70 DNA 31 1344 45 1221 GTR+I+G Subset70 71 DNA 31 1923 596 724 GTR+G Subset71 72 DNA 32 1097 356 417 GTR+G Subset72 73 DNA 32 108 54 32 GTR+G Subset73 74 DNA 32 2209 139 1893 GTR+I+G Subset74 75 DNA 32 3228 367 2217 GTR+G Subset75 76 DNA 32 1994 68 1750 GTR+G Subset76 77 DNA 30 319 40 215 GTR+G Subset77 78 DNA 31 661 143 303 GTR+G Subset78 79 DNA 32 1528 30 1408 GTR+I+G Subset79 80 DNA 27 223 70 91 GTR+I+G Subset80 81 DNA 32 1659 94 1344 GTR+I+G Subset81 82 DNA 31 883 345 270 GTR+G Subset82 83 DNA 31 1048 423 349 GTR+G Subset83 84 DNA 31 369 136 144 GTR+G Subset84 85 DNA 31 2289 125 1995 GTR+I+G Subset85 86 DNA 31 482 136 217 GTR+G Subset86 87 DNA 24 268 78 109 GTR+G Subset87 88 DNA 31 852 134 520 GTR+G Subset88 89 DNA 32 866 305 299 GTR+G Subset89 90 DNA 31 1176 456 285 GTR+G Subset90 91 DNA 27 797 179 430 GTR+I+G Subset91 92 DNA 30 332 189 46 GTR+G Subset92 93 DNA 32 1889 369 1051 GTR+G Subset93 94 DNA 31 514 180 193 GTR+G Subset94 95 DNA 32 1743 99 1452 GTR+I+G Subset95 96 DNA 31 1026 377 313 GTR+G Subset96 97 DNA 31 548 134 265 GTR+G Subset97 98 DNA 32 50 29 6 GTR Subset98 99 DNA 32 600 77 417 GTR+G Subset99 100 DNA 32 1933 48 1817 GTR+I+G Subset100 101 DNA 26 666 67 506 GTR+G Subset101 102 DNA 31 934 165 559 GTR+G Subset102 103 DNA 31 744 212 294 GTR+G Subset103 104 DNA 32 1033 255 526 GTR+G Subset104 105 DNA 32 1628 99 1383 GTR+I+G Subset105 106 DNA 26 418 119 174 GTR+G Subset106 107 DNA 29 148 30 78 GTR+G Subset107 108 DNA 32 1621 364 837 GTR+G Subset108 109 DNA 31 1391 572 388 GTR+G Subset109 110 DNA 32 2945 230 2347 GTR+I+G Subset110 111 DNA 31 1901 506 790 GTR+G Subset111 112 DNA 31 763 123 559 GTR+I+G Subset112 113 DNA 32 493 123 306 GTR+I+G Subset113 114 DNA 32 1853 280 1144 GTR+G Subset114 115 DNA 31 239 101 58 GTR+G Subset115 116 DNA 32 1968 160 1509 GTR+G Subset116 117 DNA 25 249 102 83 GTR+G Subset117 118 DNA 32 1597 81 1270 GTR+G Subset118 119 DNA 32 2516 996 741 GTR+G Subset119 120 DNA 31 1201 128 860 GTR+G Subset120 121 DNA 31 368 174 103 GTR+G Subset121 122 DNA 32 660 101 456 GTR+G Subset122 123 DNA 32 1605 426 589 GTR+G Subset123 124 DNA 31 1547 78 1183 GTR+G Subset124 125 DNA 32 638 123 404 GTR+G Subset125 126 DNA 32 373 163 94 GTR+G Subset126 127 DNA 32 1819 566 653 GTR+G Subset127 128 DNA 32 839 109 620 GTR+I+G Subset128 129 DNA 31 709 157 432 GTR+I+G Subset129 130 DNA 32 2790 61 2598 GTR+I+G Subset130 131 DNA 31 755 174 369 GTR+G Subset131 132 DNA 32 1693 30 1585 GTR+G Subset132 133 DNA 32 2528 710 974 GTR+G Subset133 134 DNA 32 2089 783 591 GTR+G Subset134 135 DNA 31 883 221 410 GTR+G Subset135 136 DNA 31 2082 343 1256 GTR+I+G Subset136 137 DNA 31 294 68 132 GTR+G Subset137 138 DNA 31 1423 353 605 GTR+G Subset138 139 DNA 31 1370 67 1205 GTR+I+G Subset139 140 DNA 31 839 238 385 GTR+G Subset140 141 DNA 32 2880 177 2393 GTR+I+G Subset141 142 DNA 30 232 66 95 GTR+G Subset142 143 DNA 31 841 119 534 GTR+G Subset143 144 DNA 31 570 84 287 GTR+G Subset144 145 DNA 32 1894 68 1676 GTR+I+G Subset145 146 DNA 32 5271 752 3487 GTR+G Subset146 147 DNA 30 405 87 191 GTR+G Subset147 148 DNA 31 108 35 40 GTR+G Subset148 149 DNA 32 2932 241 2170 GTR+I+G Subset149 150 DNA 31 1385 492 476 GTR+G Subset150 151 DNA 32 2905 110 2543 GTR+I+G Subset151 152 DNA 31 1344 345 631 GTR+G Subset152 153 DNA 32 1641 88 1434 GTR+I+G Subset153 154 DNA 32 1717 296 1104 GTR+I+G Subset154 155 DNA 31 1607 415 837 GTR+I+G Subset155 156 DNA 29 958 55 779 GTR+I+G Subset156 157 DNA 32 1064 388 330 GTR+G Subset157 158 DNA 29 579 116 307 GTR+G Subset158 159 DNA 31 2275 51 2064 GTR+I+G Subset159 160 DNA 31 235 147 40 GTR+G Subset160 161 DNA 30 293 92 136 GTR+G Subset161 162 DNA 29 378 116 150 GTR+G Subset162 163 DNA 20 378 58 219 GTR+G Subset163 164 DNA 31 824 158 476 GTR+G Subset164 165 DNA 31 589 221 176 GTR+G Subset165 166 DNA 30 217 55 122 GTR+G Subset166 167 DNA 30 100 45 25 GTR+G Subset167 168 DNA 31 2080 111 1786 GTR+I+G Subset168 169 DNA 31 977 289 448 GTR+G Subset169 170 DNA 32 787 205 386 GTR+G Subset170 171 DNA 30 186 73 47 GTR+G Subset171 172 DNA 32 1395 66 1206 GTR+I+G Subset172 173 DNA 32 749 124 463 GTR+G Subset173 174 DNA 32 1431 41 1312 GTR+G Subset174 175 DNA 32 471 209 123 GTR+G Subset175 176 DNA 32 1119 407 406 GTR+G Subset176 177 DNA 31 4788 419 3762 GTR+I+G Subset177 178 DNA 30 293 83 108 GTR+G Subset178 179 DNA 29 909 73 722 GTR+I+G Subset179 180 DNA 31 849 191 423 GTR+G Subset180 181 DNA 28 814 13 773 GTR+I+G Subset181 182 DNA 30 1276 207 835 GTR+I+G Subset182 183 DNA 29 140 45 58 GTR+G Subset183 184 DNA 32 1641 46 1496 GTR+I+G Subset184 185 DNA 30 51 13 30 GTR+G Subset185 186 DNA 32 2176 197 1703 GTR+I+G Subset186 187 DNA 32 2893 681 1320 GTR+G Subset187 188 DNA 32 2071 253 1541 GTR+I+G Subset188 189 DNA 31 3409 1477 859 GTR+G Subset189 190 DNA 32 3354 385 2457 GTR+I+G Subset190 191 DNA 31 1224 100 953 GTR+I+G Subset191 192 DNA 32 1435 560 400 GTR+G Subset192 193 DNA 32 587 150 269 GTR+G Subset193 194 DNA 32 2291 217 1780 GTR+I+G Subset194 195 DNA 27 111 25 63 GTR+G Subset195 196 DNA 32 1515 411 715 GTR+G Subset196 197 DNA 31 1902 274 1068 GTR+G Subset197 198 DNA 32 6203 596 4670 GTR+I+G Subset198 199 DNA 31 73 40 15 GTR+G Subset199 200 DNA 32 2430 313 1617 GTR+G Subset200 201 DNA 27 920 40 799 GTR+I+G Subset201 202 DNA 32 959 460 213 GTR+G Subset202 203 DNA 32 1713 220 1152 GTR+G Subset203 204 DNA 31 360 201 64 GTR Subset204 205 DNA 31 353 89 181 GTR+G Subset205 206 DNA 31 1725 47 1594 GTR+I+G Subset206 207 DNA 32 1160 161 737 GTR+G Subset207 208 DNA 32 1231 92 1020 GTR+I+G Subset208 209 DNA 29 243 63 121 GTR+G Subset209 210 DNA 31 428 170 129 GTR+G Subset210 211 DNA 31 1712 677 442 GTR+G Subset211 212 DNA 25 224 36 131 GTR+G Subset212 213 DNA 31 2026 318 1352 GTR+I+G Subset213 214 DNA 31 526 42 337 GTR+G Subset214 215 DNA 32 354 138 107 GTR+G Subset215 216 DNA 32 2534 169 2030 GTR+I+G Subset216 217 DNA 31 1223 305 610 GTR+G Subset217 218 DNA 32 2407 99 2083 GTR+I+G Subset218 219 DNA 27 347 27 228 GTR+G Subset219 220 DNA 30 1135 79 910 GTR+I+G Subset220 221 DNA 28 50 28 7 GTR+G Subset221 222 DNA 32 2369 339 1390 GTR+G Subset222 223 DNA 31 991 53 806 GTR+G Subset223 224 DNA 26 50 7 26 GTR Subset224 225 DNA 32 1016 35 922 GTR+I+G Subset225 226 DNA 31 1243 205 799 GTR+G Subset226 227 DNA 30 1002 348 372 GTR+G Subset227 228 DNA 32 1561 206 1138 GTR+G Subset228 229 DNA 31 145 82 23 GTR+G Subset229 230 DNA 32 1676 341 970 GTR+I+G Subset230 231 DNA 30 883 88 668 GTR+G Subset231 232 DNA 26 50 25 8 GTR Subset232 233 DNA 32 1929 225 1405 GTR+I+G Subset233 234 DNA 31 267 59 135 GTR+G Subset234 235 DNA 31 920 81 687 GTR+G Subset235 236 DNA 31 2124 498 1070 GTR+G Subset236 237 DNA 32 1950 187 1387 GTR+G Subset237 238 DNA 27 50 12 13 GTR Subset238 239 DNA 32 2462 713 1044 GTR+G Subset239 240 DNA 32 763 89 589 GTR+I+G Subset240 241 DNA 28 511 124 247 GTR+G Subset241 242 DNA 31 3374 334 2543 GTR+I+G Subset242 243 DNA 30 246 81 95 GTR+G Subset243 244 DNA 32 2319 120 2010 GTR+I+G Subset244 245 DNA 30 396 142 155 GTR+I+G Subset245 246 DNA 31 960 132 572 GTR+G Subset246 247 DNA 31 1228 243 673 GTR+G Subset247 248 DNA 31 847 156 500 GTR+G Subset248 249 DNA 29 260 74 130 GTR+G Subset249 250 DNA 29 68 23 20 GTR+G Subset250 251 DNA 32 2474 127 2115 GTR+I+G Subset251 252 DNA 31 649 142 330 GTR+G Subset252 253 DNA 32 1514 338 818 GTR+I+G Subset253 254 DNA 31 1194 518 336 GTR+I+G Subset254 255 DNA 31 551 149 225 GTR+G Subset255 256 DNA 31 920 80 641 GTR+G Subset256 257 DNA 30 1775 288 1170 GTR+G Subset257 258 DNA 31 1030 479 283 GTR+G Subset258 259 DNA 31 1219 416 458 GTR+G Subset259 260 DNA 31 2334 135 1958 GTR+I+G Subset260 261 DNA 31 208 39 115 GTR+G Subset261 262 DNA 30 650 270 180 GTR+G Subset262 263 DNA 32 716 245 278 GTR+G Subset263 264 DNA 31 888 337 256 GTR+G Subset264 265 DNA 31 104 52 24 GTR Subset265 266 DNA 32 1458 35 1300 GTR+G Subset266 267 DNA 32 2766 244 1943 GTR+G Subset267 268 DNA 28 56 9 43 GTR+I+G Subset268 269 DNA 30 333 71 172 GTR+G Subset269 270 DNA 32 1077 121 805 GTR+I+G Subset270 271 DNA 28 146 41 71 GTR+G Subset271 272 DNA 32 1187 23 1074 GTR+G Subset272 273 DNA 32 1854 117 1489 GTR+G Subset273 274 DNA 28 201 92 51 GTR+G Subset274 275 DNA 32 1546 516 546 GTR+G Subset275 276 DNA 18 170 31 104 GTR+G Subset276 277 DNA 31 1074 381 348 GTR+G Subset277 278 DNA 32 2372 180 1897 GTR+I+G Subset278 279 DNA 31 882 179 512 GTR+G Subset279 280 DNA 30 58 23 12 GTR+G Subset280 281 DNA 30 1395 140 1089 GTR+I+G Subset281 282 DNA 31 2209 333 1495 GTR+I+G Subset282 283 DNA 31 372 190 66 GTR+G Subset283 284 DNA 31 870 255 406 GTR+G Subset284 285 DNA 28 618 52 499 GTR+I+G Subset285 286 DNA 31 1807 673 653 GTR+G Subset286 287 DNA 31 1474 283 826 GTR+G Subset287 288 DNA 29 119 20 87 GTR Subset288 289 DNA 29 54 37 3 GTR Subset289 290 DNA 31 1896 406 1073 GTR+G Subset290 291 DNA 31 955 198 461 GTR+G Subset291 292 DNA 31 671 234 251 GTR+G Subset292 293 DNA 29 347 70 200 GTR+G Subset293 294 DNA 29 428 19 393 GTR+I+G Subset294 295 DNA 28 206 88 65 GTR+I+G Subset295 296 DNA 29 470 54 316 GTR+G Subset296 297 DNA 31 266 40 189 GTR+G Subset297 298 DNA 31 373 114 166 GTR+G Subset298 299 DNA 31 1690 163 1236 GTR+G Subset299 300 DNA 26 167 91 29 GTR+G Subset300 301 DNA 30 1337 342 664 GTR+I+G Subset301 302 DNA 32 68 37 11 GTR+G Subset302 303 DNA 32 1005 277 483 GTR+G Subset303 304 DNA 29 493 108 298 GTR+G Subset304 305 DNA 32 3331 1150 1255 GTR+I+G Subset305 306 DNA 32 2700 115 2364 GTR+I+G Subset306 307 DNA 22 87 32 30 GTR+G Subset307 308 DNA 31 1243 214 789 GTR+I+G Subset308 309 DNA 31 605 36 481 GTR+G Subset309 310 DNA 31 292 72 132 GTR+G Subset310 311 DNA 32 1593 90 1321 GTR+I+G Subset311 312 DNA 28 118 60 29 GTR+G Subset312 313 DNA 31 867 331 271 GTR+G Subset313 314 DNA 31 2154 456 1183 GTR+G Subset314 315 DNA 32 1069 185 630 GTR+G Subset315 316 DNA 31 2120 325 1371 GTR+I+G Subset316 317 DNA 32 1698 38 1590 GTR+I+G Subset317 318 DNA 32 1165 291 511 GTR+G Subset318 319 DNA 31 650 176 250 GTR+G Subset319 320 DNA 32 381 196 71 GTR+G Subset320 321 DNA 31 338 80 127 GTR+G Subset321 322 DNA 30 566 32 479 GTR+I+G Subset322 323 DNA 30 1162 532 271 GTR+G Subset323 324 DNA 31 607 104 338 GTR+G Subset324 325 DNA 31 634 107 351 GTR+G Subset325 326 DNA 31 905 296 277 GTR+G Subset326 327 DNA 32 615 207 209 GTR+G Subset327 328 DNA 29 519 88 287 GTR+G Subset328 329 DNA 28 1308 138 1028 GTR+I+G Subset329 330 DNA 31 847 200 510 GTR+I+G Subset330 331 DNA 32 2207 142 1847 GTR+I+G Subset331 332 DNA 32 1947 160 1526 GTR+I+G Subset332 333 DNA 31 441 199 91 GTR+G Subset333 334 DNA 29 592 180 227 GTR+G Subset334 335 DNA 29 542 120 236 GTR+G Subset335 336 DNA 31 172 77 45 GTR+G Subset336 337 DNA 31 1434 150 1126 GTR+I+G Subset337 338 DNA 31 408 117 202 GTR+G Subset338 339 DNA 31 265 25 206 GTR+I+G Subset339 340 DNA 31 795 97 518 GTR+G Subset340 341 DNA 31 57 23 17 GTR+I+G Subset341 342 DNA 31 1517 213 1073 GTR+I+G Subset342 343 DNA 26 165 73 48 GTR+I+G Subset343 344 DNA 32 721 37 630 GTR+I+G Subset344 345 DNA 32 748 278 249 GTR+G Subset345 346 DNA 30 405 121 170 GTR+G Subset346 347 DNA 31 349 115 142 GTR+G Subset347 348 DNA 31 260 64 134 GTR+G Subset348 349 DNA 30 362 112 196 GTR+I+G Subset349 350 DNA 24 278 172 39 GTR+G Subset350 351 DNA 26 1405 411 606 GTR+G Subset351 352 DNA 31 1061 261 516 GTR+G Subset352 353 DNA 29 672 75 493 GTR+I+G Subset353 354 DNA 30 50 25 15 GTR Subset354 355 DNA 30 1556 227 1107 GTR+I+G Subset355 356 DNA 31 848 303 301 GTR+G Subset356 357 DNA 26 126 38 45 GTR+G Subset357 358 DNA 25 1005 150 675 GTR+I+G Subset358 359 DNA 30 1239 176 756 GTR+G Subset359 360 DNA 31 1356 92 1097 GTR+I+G Subset360 361 DNA 31 920 95 682 GTR+I+G Subset361 362 DNA 31 637 40 536 GTR+I+G Subset362 363 DNA 31 720 330 169 GTR+G Subset363 364 DNA 31 1182 297 568 GTR+G Subset364 365 DNA 29 295 85 122 GTR+G Subset365 366 DNA 27 143 93 15 GTR+G Subset366 367 DNA 32 3185 357 2269 GTR+I+G Subset367 368 DNA 30 881 61 708 GTR+I+G Subset368 369 DNA 32 1339 59 1157 GTR+I+G Subset369 370 DNA 28 305 117 103 GTR+G Subset370 371 DNA 31 973 107 714 GTR+I+G Subset371 372 DNA 31 2453 390 1534 GTR+G Subset372 373 DNA 20 238 87 80 GTR+G Subset373 374 DNA 28 140 63 42 GTR+G Subset374 375 DNA 30 133 42 49 GTR+G Subset375 376 DNA 32 1817 382 1014 GTR+I+G Subset376 377 DNA 31 1762 166 1357 GTR+I+G Subset377 378 DNA 31 1897 380 1041 GTR+G Subset378 379 DNA 28 865 148 583 GTR+I+G Subset379 380 DNA 25 1017 129 655 GTR+G Subset380 381 DNA 32 1813 57 1567 GTR+I+G Subset381 382 DNA 23 817 146 550 GTR+I+G Subset382 383 DNA 19 170 80 31 GTR+G Subset383 384 DNA 31 120 37 49 GTR+G Subset384 385 DNA 22 50 11 27 GTR+G Subset385 386 DNA 32 1084 15 1034 GTR+I+G Subset386 387 DNA 31 547 92 326 GTR+G Subset387 388 DNA 24 386 78 241 GTR+G Subset388 389 DNA 30 878 299 274 GTR+G Subset389 390 DNA 32 702 196 338 GTR+G Subset390 391 DNA 30 555 198 224 GTR+G Subset391 392 DNA 27 60 21 16 GTR+G Subset392 393 DNA 24 435 27 254 GTR Subset393 394 DNA 32 906 74 750 GTR+I+G Subset394 395 DNA 23 93 28 33 GTR+G Subset395 396 DNA 30 549 118 352 GTR+I+G Subset396 397 DNA 23 81 6 66 GTR+G Subset397 398 DNA 31 603 4 586 GTR+G Subset398 399 DNA 27 740 149 395 GTR+G Subset399 400 DNA 30 59 19 22 GTR+G Subset400 401 DNA 29 696 161 331 GTR+G Subset401 402 DNA 30 463 142 157 GTR+G Subset402 403 DNA 31 91 28 46 GTR+G Subset403 404 DNA 31 821 364 213 GTR+G Subset404 405 DNA 29 371 94 192 GTR+I+G Subset405 406 DNA 31 470 13 418 GTR+I+G Subset406 407 DNA 31 376 101 142 GTR+G Subset407 408 DNA 25 541 141 284 GTR+G Subset408 409 DNA 29 298 47 181 GTR+G Subset409 410 DNA 20 279 111 78 GTR+G Subset410 411 DNA 20 327 30 252 GTR+G Subset411 412 DNA 31 495 127 242 GTR+G Subset412 413 DNA 31 714 60 538 GTR+G Subset413 414 DNA 32 1351 35 1215 GTR+G Subset414 415 DNA 28 297 135 88 GTR+G Subset415 416 DNA 20 316 64 195 GTR+G Subset416 417 DNA 30 580 132 292 GTR+G Subset417 418 DNA 31 112 41 38 GTR+G Subset418 419 DNA 32 1975 213 1490 GTR+I+G Subset419 420 DNA 29 114 48 36 GTR+G Subset420 421 DNA 30 145 44 74 GTR+G Subset421 422 DNA 31 194 53 75 GTR+G Subset422 423 DNA 28 72 30 23 GTR+G Subset423 424 DNA 24 52 22 15 GTR Subset424 425 DNA 31 1575 48 1459 GTR+I+G Subset425 426 DNA 32 677 64 504 GTR+I+G Subset426 427 DNA 32 288 127 93 GTR+I+G Subset427 428 DNA 28 55 52 0 GTR+G Subset428 429 DNA 27 355 64 200 GTR+G Subset429 430 DNA 31 1090 45 959 GTR+I+G Subset430 431 DNA 32 1156 512 299 GTR+I+G Subset431 432 DNA 31 665 48 531 GTR+I+G Subset432 433 DNA 29 197 52 100 GTR+G Subset433 434 DNA 31 51 9 29 GTR+G Subset434 435 DNA 29 923 237 489 GTR+G Subset435 436 DNA 30 231 74 124 GTR+I+G Subset436 437 DNA 26 145 59 48 GTR+G Subset437 438 DNA 26 170 48 80 GTR+G Subset438 439 DNA 29 245 72 110 GTR+G Subset439 440 DNA 30 337 172 53 GTR Subset440 441 DNA 29 172 21 126 GTR+G Subset441 442 DNA 32 899 180 509 GTR+G Subset442 443 DNA 30 648 182 275 GTR+G Subset443 444 DNA 32 107 32 51 GTR Subset444 445 DNA 30 50 15 23 GTR+G Subset445 446 DNA 26 283 61 171 GTR+I+G Subset446 447 DNA 29 420 180 147 GTR+G Subset447 448 DNA 29 162 73 58 GTR+G Subset448 449 DNA 28 476 80 320 GTR+G Subset449 450 DNA 25 335 60 186 GTR+G Subset450 451 DNA 29 553 61 439 GTR+I+G Subset451 452 DNA 29 113 52 35 GTR+G Subset452 453 DNA 24 468 94 250 GTR+G Subset453 454 DNA 24 426 116 196 GTR+G Subset454 455 DNA 31 342 156 126 GTR+I+G Subset455 456 DNA 31 335 181 88 GTR+I+G Subset456 457 DNA 26 153 42 70 GTR+I+G Subset457 458 DNA 24 311 158 90 GTR+I+G Subset458 459 DNA 30 218 105 67 GTR+G Subset459 460 DNA 30 574 201 178 GTR+G Subset460 461 DNA 31 2396 170 1976 GTR+I+G Subset461 462 DNA 28 307 124 107 GTR+G Subset462 463 DNA 29 671 192 303 GTR+G Subset463 464 DNA 31 644 211 263 GTR+I+G Subset464 465 DNA 31 647 124 323 GTR+G Subset465 466 DNA 31 656 183 264 GTR+G Subset466 467 DNA 31 379 180 106 GTR+I+G Subset467 468 DNA 29 50 17 25 GTR+G Subset468 469 DNA 26 913 92 710 GTR+I+G Subset469 470 DNA 23 50 29 8 GTR+G Subset470 471 DNA 30 537 71 345 GTR+G Subset471 472 DNA 30 1040 34 900 GTR+I+G Subset472 473 DNA 32 955 264 394 GTR+G Subset473 474 DNA 27 107 47 33 GTR+G Subset474 475 DNA 27 103 45 29 GTR+G Subset475 476 DNA 31 1159 42 941 GTR+G Subset476 477 DNA 29 81 43 15 GTR+G Subset477 478 DNA 32 1791 45 1659 GTR+I+G Subset478 479 DNA 30 258 69 126 GTR+G Subset479 480 DNA 32 1409 50 1239 GTR+I+G Subset480 481 DNA 30 328 56 244 GTR+I+G Subset481 482 DNA 31 192 110 25 GTR Subset482 483 DNA 32 1053 294 528 GTR+I+G Subset483 484 DNA 30 152 52 56 GTR+G Subset484 485 DNA 32 1326 216 898 GTR+I+G Subset485 486 DNA 31 987 212 505 GTR+G Subset486 487 DNA 28 208 60 96 GTR+G Subset487 488 DNA 30 687 64 517 GTR+G Subset488 489 DNA 24 129 42 52 GTR+G Subset489 490 DNA 31 715 23 642 GTR+I+G Subset490 491 DNA 30 845 205 414 GTR+I+G Subset491 492 DNA 20 142 28 85 GTR+I+G Subset492 493 DNA 20 94 17 31 GTR+G Subset493 494 DNA 32 969 15 889 GTR+G Subset494 495 DNA 29 115 48 25 GTR+G Subset495 496 DNA 32 1247 158 863 GTR+I+G Subset496 497 DNA 30 442 99 226 GTR+G Subset497 498 DNA 31 457 156 181 GTR+G Subset498 499 DNA 22 193 61 73 GTR+G Subset499 500 DNA 30 451 174 156 GTR+G Subset500 501 DNA 23 318 108 107 GTR+G Subset501 502 DNA 24 765 76 565 GTR+I+G Subset502 503 DNA 23 52 31 11 GTR+G Subset503 504 DNA 31 669 59 556 GTR+I+G Subset504 505 DNA 22 134 14 94 GTR+G Subset505 506 DNA 20 293 48 171 GTR+G Subset506 507 DNA 30 228 142 24 GTR Subset507 508 DNA 29 1078 62 862 GTR+I+G Subset508 509 DNA 30 804 75 634 GTR+I+G Subset509 510 DNA 29 806 105 549 GTR+I+G Subset510 511 DNA 29 258 56 148 GTR+G Subset511 512 DNA 30 1028 11 978 GTR+I+G Subset512 513 DNA 29 316 9 283 GTR+G Subset513 514 DNA 29 98 26 41 GTR+I+G Subset514 515 DNA 28 90 15 52 GTR Subset515 516 DNA 27 79 27 23 GTR+G Subset516 517 DNA 29 442 115 218 GTR+G Subset517 518 DNA 29 745 174 388 GTR+G Subset518 519 DNA 31 1994 194 1545 GTR+I+G Subset519 520 DNA 19 434 116 209 GTR+G Subset520 521 DNA 31 108 44 32 GTR+G Subset521 522 DNA 29 275 58 143 GTR+G Subset522 523 DNA 25 697 146 238 GTR+G Subset523 524 DNA 29 139 51 52 GTR+G Subset524 525 DNA 21 124 59 32 GTR+G Subset525 526 DNA 28 620 166 324 GTR+I+G Subset526 527 DNA 31 550 208 183 GTR+I+G Subset527 528 DNA 29 388 144 143 GTR+I+G Subset528 529 DNA 31 481 136 267 GTR+G Subset529 530 DNA 31 114 17 72 GTR+I+G Subset530 531 DNA 31 322 19 264 GTR+G Subset531 532 DNA 31 69 37 14 GTR+I+G Subset532 533 DNA 31 185 1 180 GTR Subset533 534 DNA 25 61 30 12 GTR Subset534 535 DNA 29 262 117 76 GTR+G Subset535 536 DNA 23 181 88 34 GTR+G Subset536 537 DNA 28 217 82 90 GTR+G Subset537 538 DNA 26 272 114 97 GTR+I+G Subset538 539 DNA 25 944 49 725 GTR+G Subset539 540 DNA 25 628 227 238 GTR+G Subset540 541 DNA 30 693 129 313 GTR+G Subset541 542 DNA 29 79 35 23 GTR Subset542 543 DNA 30 293 106 102 GTR+G Subset543 544 DNA 27 683 79 503 GTR+I+G Subset544 545 DNA 20 222 95 69 GTR+G Subset545 546 DNA 30 596 123 382 GTR+I+G Subset546 547 DNA 24 166 53 69 GTR+G Subset547 548 DNA 27 257 46 150 GTR+G Subset548 549 DNA 30 123 44 37 GTR+G Subset549 550 DNA 28 52 26 12 GTR+G Subset550 551 DNA 30 381 153 125 GTR+G Subset551 552 DNA 30 413 145 157 GTR+G Subset552 553 DNA 31 545 79 304 GTR+G Subset553 554 DNA 31 335 92 132 GTR+G Subset554 555 DNA 27 359 147 129 GTR+I+G Subset555 556 DNA 40 2950 1189 1426 TIM2+F+I+G4 12S_16S 557 DNA 40 1288 722 433 TVM+F+I+G4 ATPase6_part1_ATPase8_part1_ND2_part2_ND5_part1 558 DNA 40 2086 514 1333 TVM+F+I+G4 ATPase6_part2_COIII_part2_CytB_part2_ND3_part2_ND4_part2_ND5_part2 559 DNA 44 1411 1351 29 TIM3+F+I+G4 ATPase6_part3_ATPase8_part3_COI_part3_COII_part3_COIII_part3_ND4L_part3 560 DNA 40 430 223 159 TIM3+F+G4 ATPase8_part2_ND2_part3 561 DNA 44 848 253 523 GTR+F+I+G4 COI_part1_ND1_part1 562 DNA 44 1179 124 956 GTR+F+I+G4 COI_part2_COII_part2_ND1_part2_ND4L_part2 563 DNA 40 1561 663 734 TVM+F+I+G4 COII_part1_COIII_part1_CytB_part1_ND3_part1_ND4_part1_ND4L_part1 564 DNA 40 1915 1864 21 TIM+F+I+G4 CytB_part3_ND1_part3_ND3_part3_ND4_part3_ND5_part3 565 DNA 40 368 315 39 TPM3u+F+I+G4 ND2_part1 566 38 357 179 142 K3Pu+F+I+G4 ND6_part1_ND6_part3 567 DNA 38 179 159 16 TPM3u+F+I+G4 ND6_part2 Degree of missing data: 0.322 Info: multi-threading strategy over partitions Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.586 seconds NOTE: 992 MB RAM (0 GB) is required! Estimate model parameters (epsilon = 0.100) Initial log-likelihood: -2958876.896 Current log-likelihood at step 1: -2737844.562 Current log-likelihood at step 2: -2713246.791 Current log-likelihood at step 3: -2705365.485 Current log-likelihood at step 4: -2703349.587 Current log-likelihood at step 5: -2702564.016 Current log-likelihood at step 6: -2701585.938 Current log-likelihood at step 7: -2701157.655 Current log-likelihood at step 8: -2700854.106 Current log-likelihood at step 9: -2700324.010 Current log-likelihood at step 10: -2700185.995 Current log-likelihood at step 11: -2700152.129 Current log-likelihood at step 12: -2700121.985 Current log-likelihood at step 13: -2700050.892 Current log-likelihood at step 14: -2699958.406 Current log-likelihood at step 15: -2699807.018 Current log-likelihood at step 16: -2699765.679 Current log-likelihood at step 17: -2699743.706 Current log-likelihood at step 18: -2699722.623 Current log-likelihood at step 19: -2699692.989 Current log-likelihood at step 20: -2699546.649 Current log-likelihood at step 21: -2699473.609 Current log-likelihood at step 22: -2699330.399 Current log-likelihood at step 23: -2698923.149 Current log-likelihood at step 24: -2698840.334 Current log-likelihood at step 25: -2698823.793 Current log-likelihood at step 26: -2698816.442 Current log-likelihood at step 27: -2698811.885 Current log-likelihood at step 28: -2698805.367 Current log-likelihood at step 29: -2698792.801 Current log-likelihood at step 30: -2698784.765 Current log-likelihood at step 31: -2698749.386 Current log-likelihood at step 32: -2698734.689 Current log-likelihood at step 33: -2698732.671 Current log-likelihood at step 34: -2698730.905 Current log-likelihood at step 35: -2698729.149 Current log-likelihood at step 36: -2698727.395 Current log-likelihood at step 37: -2698725.626 Current log-likelihood at step 38: -2698723.831 Current log-likelihood at step 39: -2698721.941 Current log-likelihood at step 40: -2698719.967 Current log-likelihood at step 41: -2698717.838 Current log-likelihood at step 42: -2698715.542 Current log-likelihood at step 43: -2698712.962 Current log-likelihood at step 44: -2698709.924 Current log-likelihood at step 45: -2698706.230 Current log-likelihood at step 46: -2698701.409 Current log-likelihood at step 47: -2698665.873 Current log-likelihood at step 48: -2698556.265 Current log-likelihood at step 49: -2698526.571 Current log-likelihood at step 50: -2698524.460 Current log-likelihood at step 51: -2698523.487 Current log-likelihood at step 52: -2698522.547 Current log-likelihood at step 53: -2698521.602 Current log-likelihood at step 54: -2698520.652 Current log-likelihood at step 55: -2698519.686 Current log-likelihood at step 56: -2698518.705 Current log-likelihood at step 57: -2698517.703 Current log-likelihood at step 58: -2698516.678 Current log-likelihood at step 59: -2698515.623 Current log-likelihood at step 60: -2698514.519 Current log-likelihood at step 61: -2698513.375 Current log-likelihood at step 62: -2698512.127 Current log-likelihood at step 63: -2698510.807 Current log-likelihood at step 64: -2698509.402 Current log-likelihood at step 65: -2698507.917 Current log-likelihood at step 66: -2698506.324 Current log-likelihood at step 67: -2698504.645 Current log-likelihood at step 68: -2698502.857 Current log-likelihood at step 69: -2698351.114 Current log-likelihood at step 70: -2698300.466 Current log-likelihood at step 71: -2698296.809 Current log-likelihood at step 72: -2698296.266 Current log-likelihood at step 73: -2698295.894 Current log-likelihood at step 74: -2698295.502 Current log-likelihood at step 75: -2698295.146 Current log-likelihood at step 76: -2698294.804 Current log-likelihood at step 77: -2698294.455 Current log-likelihood at step 78: -2698294.132 Current log-likelihood at step 79: -2698293.807 Current log-likelihood at step 80: -2698293.495 Current log-likelihood at step 81: -2698293.171 Current log-likelihood at step 82: -2698292.839 Current log-likelihood at step 83: -2698292.496 Current log-likelihood at step 84: -2698292.150 Current log-likelihood at step 85: -2698291.800 Current log-likelihood at step 86: -2698291.452 Current log-likelihood at step 87: -2698291.120 Current log-likelihood at step 88: -2698290.810 Current log-likelihood at step 89: -2698290.526 Current log-likelihood at step 90: -2698290.267 Current log-likelihood at step 91: -2698290.027 Current log-likelihood at step 92: -2698289.803 Current log-likelihood at step 93: -2698289.590 Current log-likelihood at step 94: -2698289.381 Current log-likelihood at step 95: -2698289.180 Current log-likelihood at step 96: -2698288.981 Current log-likelihood at step 97: -2698288.786 Current log-likelihood at step 98: -2698288.595 Current log-likelihood at step 99: -2698288.405 Partition-specific rates: 1.249 0.025 0.881 1.545 0.162 1.145 0.146 1.243 0.277 1.180 0.183 1.290 0.968 1.778 0.367 1.065 0.205 1.145 0.155 2.085 0.704 0.661 0.114 1.341 0.249 3.422 0.508 0.084 3.454 0.718 0.078 1.122 1.084 0.066 0.536 1.727 0.316 1.572 0.868 1.664 0.428 0.266 1.215 1.505 0.147 1.105 0.296 2.002 0.606 1.248 16.934 0.761 0.740 0.066 0.651 0.843 0.089 0.944 0.472 0.340 4.335 0.200 1.748 0.162 1.087 0.047 3.127 1.550 0.707 0.071 1.011 1.098 3.570 0.123 0.334 0.089 0.376 0.927 0.070 1.472 0.169 1.820 2.143 1.180 0.110 1.438 1.080 0.503 1.193 1.960 0.871 2.471 0.582 1.542 0.147 1.313 0.912 1.836 0.432 0.039 0.412 0.647 2.261 0.831 0.136 0.964 1.682 0.584 1.654 0.173 0.901 0.537 1.011 0.666 1.680 0.239 1.515 0.138 1.389 0.266 1.652 0.400 0.984 0.248 0.487 2.496 1.038 0.425 0.900 0.048 0.607 0.042 1.149 1.319 0.702 0.522 1.000 0.755 0.100 0.718 0.149 1.391 0.443 0.569 0.080 0.348 0.807 2.435 0.249 0.903 0.090 0.860 0.132 0.419 0.847 0.182 1.275 0.620 0.066 3.843 3.969 1.157 1.039 0.604 1.719 1.029 1.874 0.147 0.858 0.900 1.323 0.114 0.941 0.056 2.860 1.018 0.213 1.108 0.254 1.076 0.082 0.466 1.289 0.064 0.814 0.277 0.805 0.362 1.892 0.352 0.234 1.567 0.675 0.202 1.378 0.696 0.460 0.246 3.720 0.382 0.139 2.631 0.598 2.064 0.640 0.064 0.848 0.197 1.163 1.609 1.197 0.660 0.531 0.318 1.860 0.319 0.860 0.114 8.133 0.204 6.209 0.456 0.165 0.661 0.096 0.438 1.254 0.402 2.207 0.750 0.404 1.703 0.427 1.242 0.223 0.689 0.314 1.724 1.376 0.341 0.921 0.252 1.094 0.125 1.444 0.440 0.874 0.630 1.401 1.092 0.105 0.832 0.721 1.798 0.935 0.302 0.467 2.579 1.253 0.154 0.832 2.022 1.651 1.259 2.305 0.064 0.388 0.649 1.630 0.307 1.207 0.070 0.169 2.229 1.140 2.336 1.093 0.248 0.682 3.029 0.322 0.364 1.585 1.443 0.335 1.694 0.549 3.092 3.063 0.635 0.802 0.966 1.707 0.134 4.615 0.507 0.480 2.777 0.319 2.270 1.277 8.982 0.928 1.126 1.383 0.090 1.256 0.662 0.174 0.736 0.154 2.151 1.620 0.625 0.556 0.476 0.044 1.206 0.806 2.269 0.991 0.173 1.701 0.576 0.645 1.565 1.408 1.224 0.509 0.540 0.142 0.250 2.268 1.343 1.160 1.552 0.301 0.925 0.367 0.365 2.210 0.446 3.039 0.156 1.325 1.141 2.022 1.124 0.964 3.025 1.452 0.775 0.429 2.115 0.676 1.443 1.889 0.455 0.665 0.263 0.256 0.275 1.646 0.978 1.768 2.494 0.281 0.225 0.096 2.890 0.302 0.512 1.734 2.488 2.260 0.800 0.261 0.648 0.494 0.456 0.108 0.606 324.963 2.694 0.697 0.041 0.513 1.410 1.955 1.851 1.298 2.239 0.336 0.233 2.138 1.056 0.411 0.017 1.177 1.513 1.096 1.173 5.301 2.120 1.030 0.095 0.895 0.756 0.627 1.948 0.314 0.897 0.239 0.069 4.543 1.557 0.794 3.285 0.251 1.882 1.140 1.696 3.975 3.446 0.054 0.308 1.253 30.175 0.440 0.096 2.432 0.253 0.753 4.147 1.058 1.472 1.993 1.748 1.038 1.832 1.212 0.840 1.193 0.714 1.920 0.702 1.320 1.449 0.498 1.393 0.325 1.893 1.568 2.505 1.975 2.961 0.873 1.870 2.622 1.356 0.235 2.325 2.327 1.306 0.874 1.116 3.361 1.812 0.325 2.142 0.472 0.121 0.916 6.160 1.562 0.151 6.443 0.057 1.148 0.088 0.585 3.530 2.185 2.089 0.488 0.631 0.676 0.569 1.458 0.106 0.875 1.327 2.310 0.048 2.912 0.381 0.927 1.119 3.987 0.976 1.856 0.973 4.081 0.291 0.960 0.964 2.478 0.182 0.369 0.351 0.646 0.037 0.073 1.365 0.360 2.257 1.014 0.936 0.255 1.543 3.346 0.635 1.087 2.020 2.043 1.014 2.647 1.706 0.837 2.297 0.178 6.637 0.016 2.836 1.967 2.177 3.037 2.536 0.288 2.095 1.034 1.437 1.308 0.502 1.614 0.696 1.334 0.713 0.984 1.214 1.694 1.460 0.465 0.999 1.404 2.882 3.184 0.786 19.407 3.917 1.480 0.293 1.953 30.307 18.242 2.889 18.270 Parameters optimization took 99 rounds (163.943 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! Wrote distance file to... Computing ML distances based on estimated model parameters... Calculating distance matrix: done in 0.000215171 secs using 1021% CPU Computing ML distances took 0.000366 sec (of wall-clock time) 0.002354 sec (of CPU time) WARNING: Some pairwise ML distances are too long (saturated) Setting up auxiliary I and S matrices: done in 0.000487153 secs Computing RapidNJ tree took 0.024379 sec (of wall-clock time) 0.069177 sec (of CPU time) Log-likelihood of RapidNJ tree: -3037651.308 -------------------------------------------------------------------- | INITIALIZING CANDIDATE TREE SET | -------------------------------------------------------------------- Generating 98 parsimony trees... 70.648 second Computing log-likelihood of 98 initial trees ... 97.631 seconds Current best score: -2698288.405 Do NNI search on 20 best initial trees Estimate model parameters (epsilon = 0.100) Initial log-likelihood: -2698092.402 Current log-likelihood at step 1: -2698089.462 Current log-likelihood at step 2: -2698088.761 Current log-likelihood at step 3: -2698088.408 Current log-likelihood at step 4: -2698088.108 Current log-likelihood at step 5: -2698087.830 Current log-likelihood at step 6: -2698087.569 Current log-likelihood at step 7: -2698087.316 Current log-likelihood at step 8: -2698087.071 Current log-likelihood at step 9: -2698086.835 Current log-likelihood at step 10: -2698086.604 Current log-likelihood at step 11: -2698086.381 Current log-likelihood at step 12: -2698086.161 Current log-likelihood at step 13: -2698085.943 Current log-likelihood at step 14: -2698085.730 Current log-likelihood at step 15: -2698085.523 Current log-likelihood at step 16: -2698085.313 Current log-likelihood at step 17: -2698085.108 Current log-likelihood at step 18: -2698084.900 Current log-likelihood at step 19: -2698084.694 Current log-likelihood at step 20: -2698084.492 Current log-likelihood at step 21: -2698084.286 Current log-likelihood at step 22: -2698084.081 Current log-likelihood at step 23: -2698083.874 Current log-likelihood at step 24: -2698083.662 Current log-likelihood at step 25: -2698083.449 Current log-likelihood at step 26: -2698083.233 Current log-likelihood at step 27: -2698083.011 Current log-likelihood at step 28: -2698082.784 Current log-likelihood at step 29: -2698082.552 Current log-likelihood at step 30: -2698082.314 Current log-likelihood at step 31: -2698082.067 Current log-likelihood at step 32: -2698081.807 Current log-likelihood at step 33: -2698081.538 Current log-likelihood at step 34: -2698081.254 Current log-likelihood at step 35: -2698080.952 Current log-likelihood at step 36: -2698080.634 Current log-likelihood at step 37: -2698080.286 Current log-likelihood at step 38: -2698079.921 Current log-likelihood at step 39: -2698079.525 Current log-likelihood at step 40: -2698079.094 Current log-likelihood at step 41: -2698078.592 Current log-likelihood at step 42: -2698078.036 Current log-likelihood at step 43: -2698077.414 Current log-likelihood at step 44: -2698076.687 Current log-likelihood at step 45: -2698075.824 Current log-likelihood at step 46: -2698074.796 Current log-likelihood at step 47: -2698073.446 Current log-likelihood at step 48: -2698071.588 Current log-likelihood at step 49: -2698057.553 Current log-likelihood at step 50: -2697983.849 Current log-likelihood at step 51: -2697968.985 Current log-likelihood at step 52: -2697967.469 Current log-likelihood at step 53: -2697967.161 Current log-likelihood at step 54: -2697967.078 Parameters optimization took 53 rounds (70.279 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! BETTER TREE FOUND at iteration 1: -2697967.078 Estimate model parameters (epsilon = 0.100) Initial log-likelihood: -2697960.632 Current log-likelihood at step 1: -2697954.863 Current log-likelihood at step 2: -2697952.557 Current log-likelihood at step 3: -2697951.174 Current log-likelihood at step 4: -2697950.055 Current log-likelihood at step 5: -2697949.211 Current log-likelihood at step 6: -2697948.538 Current log-likelihood at step 7: -2697948.085 Current log-likelihood at step 8: -2697947.960 Current log-likelihood at step 9: -2697947.840 Current log-likelihood at step 10: -2697947.723 Current log-likelihood at step 11: -2697947.611 Current log-likelihood at step 12: -2697947.502 Current log-likelihood at step 13: -2697947.396 Current log-likelihood at step 14: -2697947.294 Current log-likelihood at step 15: -2697947.195 Parameters optimization took 14 rounds (33.198 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! BETTER TREE FOUND at iteration 2: -2697947.195 Iteration 10 / LogL: -2698001.494 / Time: 0h:10m:20s Iteration 20 / LogL: -2697984.726 / Time: 0h:13m:35s Finish initializing candidate tree set (8) Current best tree score: -2697947.195 / CPU time: 643.739 Number of iterations: 20 -------------------------------------------------------------------- | OPTIMIZING CANDIDATE TREE SET | -------------------------------------------------------------------- Iteration 30 / LogL: -2697969.175 / Time: 0h:15m:53s (17h:59m:34s left) Iteration 40 / LogL: -2697951.932 / Time: 0h:18m:6s (15h:10m:21s left) Iteration 50 / LogL: -2697954.770 / Time: 0h:20m:22s (13h:30m:53s left) Iteration 60 / LogL: -2697965.641 / Time: 0h:22m:33s (12h:22m:11s left) Estimate model parameters (epsilon = 0.100) Initial log-likelihood: -2697946.962 Current log-likelihood at step 1: -2697946.541 Current log-likelihood at step 2: -2697946.306 Current log-likelihood at step 3: -2697946.195 Current log-likelihood at step 4: -2697946.093 Current log-likelihood at step 5: -2697946.000 Parameters optimization took 4 rounds (7.957 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! UPDATE BEST LOG-LIKELIHOOD: -2697946.000 Iteration 70 / LogL: -2697952.598 / Time: 0h:24m:56s (11h:37m:54s left) Iteration 80 / LogL: -2697948.274 / Time: 0h:26m:59s (10h:56m:9s left) Iteration 90 / LogL: -2697946.567 / Time: 0h:29m:28s (10h:33m:5s left) Iteration 100 / LogL: -2697964.654 / Time: 0h:31m:51s (10h:11m:53s left) Iteration 110 / LogL: -2697947.660 / Time: 0h:34m:2s (9h:50m:46s left) Iteration 120 / LogL: -2697946.945 / Time: 0h:36m:7s (9h:31m:2s left) Iteration 130 / LogL: -2697953.890 / Time: 0h:38m:46s (9h:22m:31s left) Iteration 140 / LogL: -2697948.221 / Time: 0h:40m:56s (9h:8m:16s left) Iteration 150 / LogL: -2697978.792 / Time: 0h:43m:19s (8h:58m:15s left) Iteration 160 / LogL: -2697948.318 / Time: 0h:45m:56s (8h:52m:10s left) Iteration 170 / LogL: -2697953.465 / Time: 0h:48m:42s (8h:47m:49s left) Iteration 180 / LogL: -2698005.512 / Time: 0h:51m:13s (8h:41m:18s left) Iteration 190 / LogL: -2697947.439 / Time: 0h:53m:25s (8h:32m:7s left) Iteration 200 / LogL: -2697955.391 / Time: 0h:55m:40s (8h:24m:0s left) Iteration 210 / LogL: -2697954.649 / Time: 0h:58m:0s (8h:17m:14s left) Iteration 220 / LogL: -2697968.483 / Time: 1h:0m:45s (8h:14m:16s left) Iteration 230 / LogL: -2697953.166 / Time: 1h:3m:19s (8h:9m:54s left) Iteration 240 / LogL: -2697974.349 / Time: 1h:5m:58s (8h:6m:16s left) Iteration 250 / LogL: -2697951.823 / Time: 1h:8m:22s (8h:0m:59s left) Iteration 260 / LogL: -2697948.943 / Time: 1h:10m:59s (7h:57m:24s left) Iteration 270 / LogL: -2697982.810 / Time: 1h:13m:44s (7h:54m:44s left) Iteration 280 / LogL: -2697963.189 / Time: 1h:16m:12s (7h:50m:18s left) Iteration 290 / LogL: -2697950.901 / Time: 1h:19m:9s (7h:48m:47s left) Iteration 300 / LogL: -2697993.220 / Time: 1h:21m:36s (7h:44m:28s left) Iteration 310 / LogL: -2697952.441 / Time: 1h:23m:55s (7h:39m:29s left) Iteration 320 / LogL: -2697964.659 / Time: 1h:26m:21s (7h:35m:17s left) Iteration 330 / LogL: -2697952.937 / Time: 1h:29m:3s (7h:32m:31s left) Iteration 340 / LogL: -2697956.175 / Time: 1h:31m:16s (7h:27m:26s left) Iteration 350 / LogL: -2698001.177 / Time: 1h:33m:32s (7h:22m:41s left) Iteration 360 / LogL: -2697951.928 / Time: 1h:35m:50s (7h:18m:18s left) Iteration 370 / LogL: -2698009.821 / Time: 1h:38m:20s (7h:14m:54s left) Iteration 380 / LogL: -2697957.804 / Time: 1h:40m:44s (7h:11m:3s left) Iteration 390 / LogL: -2697955.182 / Time: 1h:43m:1s (7h:6m:52s left) Iteration 400 / LogL: -2697951.439 / Time: 1h:45m:35s (7h:3m:53s left) Iteration 410 / LogL: -2697962.857 / Time: 1h:48m:4s (7h:0m:36s left) Iteration 420 / LogL: -2697973.120 / Time: 1h:50m:35s (6h:57m:29s left) Iteration 430 / LogL: -2697959.515 / Time: 1h:53m:15s (6h:54m:59s left) Iteration 440 / LogL: -2697949.859 / Time: 1h:55m:53s (6h:52m:17s left) Iteration 450 / LogL: -2697949.877 / Time: 1h:58m:10s (6h:48m:27s left) Iteration 460 / LogL: -2697948.508 / Time: 2h:0m:45s (6h:45m:38s left) Iteration 470 / LogL: -2697979.446 / Time: 2h:2m:54s (6h:41m:25s left) Iteration 480 / LogL: -2697951.016 / Time: 2h:5m:27s (6h:38m:36s left) Iteration 490 / LogL: -2697948.820 / Time: 2h:7m:48s (6h:35m:8s left) Iteration 500 / LogL: -2697952.775 / Time: 2h:10m:26s (6h:32m:35s left) Iteration 510 / LogL: -2697949.418 / Time: 2h:12m:45s (6h:29m:5s left) Iteration 520 / LogL: -2697952.294 / Time: 2h:15m:3s (6h:25m:38s left) Iteration 530 / LogL: -2697983.266 / Time: 2h:17m:50s (6h:23m:30s left) Estimate model parameters (epsilon = 0.100) Initial log-likelihood: -2697945.640 Current log-likelihood at step 1: -2697945.519 Current log-likelihood at step 2: -2697945.455 Parameters optimization took 1 rounds (2.786 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! UPDATE BEST LOG-LIKELIHOOD: -2697945.455 Iteration 540 / LogL: -2697949.039 / Time: 2h:20m:32s (6h:21m:11s left) Iteration 550 / LogL: -2697954.806 / Time: 2h:23m:7s (6h:18m:29s left) Estimate model parameters (epsilon = 0.100) Initial log-likelihood: -2697945.440 Current log-likelihood at step 1: -2697945.379 Parameters optimization took 0 rounds (1.434 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! UPDATE BEST LOG-LIKELIHOOD: -2697945.379 Iteration 560 / LogL: -2697952.506 / Time: 2h:25m:23s (6h:15m:0s left) Iteration 570 / LogL: -2697978.351 / Time: 2h:27m:58s (6h:12m:23s left) Iteration 580 / LogL: -2697951.913 / Time: 2h:30m:35s (6h:9m:47s left) Iteration 590 / LogL: -2697971.885 / Time: 2h:33m:43s (6h:8m:29s left) Iteration 600 / LogL: -2697947.545 / Time: 2h:36m:11s (6h:5m:33s left) Iteration 610 / LogL: -2697956.589 / Time: 2h:38m:28s (6h:2m:12s left) Iteration 620 / LogL: -2697965.052 / Time: 2h:41m:0s (5h:59m:25s left) Iteration 630 / LogL: -2697979.952 / Time: 2h:43m:13s (5h:56m:0s left) Iteration 640 / LogL: -2697953.671 / Time: 2h:45m:44s (5h:53m:14s left) Iteration 650 / LogL: -2697949.340 / Time: 2h:48m:13s (5h:50m:26s left) Iteration 660 / LogL: -2697948.613 / Time: 2h:50m:34s (5h:47m:20s left) Iteration 670 / LogL: -2697949.921 / Time: 2h:53m:19s (5h:45m:3s left) Estimate model parameters (epsilon = 0.100) Initial log-likelihood: -2697945.308 Current log-likelihood at step 1: -2697945.226 Parameters optimization took 0 rounds (1.426 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! UPDATE BEST LOG-LIKELIHOOD: -2697945.226 Iteration 680 / LogL: -2698009.432 / Time: 2h:56m:8s (5h:42m:54s left) Iteration 690 / LogL: -2697960.603 / Time: 2h:58m:46s (5h:40m:23s left) Iteration 700 / LogL: -2697947.174 / Time: 3h:1m:8s (5h:37m:23s left) Iteration 710 / LogL: -2697952.296 / Time: 3h:3m:27s (5h:34m:16s left) Iteration 720 / LogL: -2697964.189 / Time: 3h:5m:39s (5h:31m:1s left) Iteration 730 / LogL: -2697957.677 / Time: 3h:8m:8s (5h:28m:15s left) Iteration 740 / LogL: -2697952.281 / Time: 3h:10m:14s (5h:24m:51s left) Iteration 750 / LogL: -2697947.834 / Time: 3h:12m:29s (5h:21m:44s left) Iteration 760 / LogL: -2697953.175 / Time: 3h:14m:31s (5h:18m:17s left) Iteration 770 / LogL: -2697983.338 / Time: 3h:17m:4s (5h:15m:41s left) Iteration 780 / LogL: -2697952.294 / Time: 3h:19m:27s (5h:12m:51s left) Iteration 790 / LogL: -2697955.918 / Time: 3h:21m:31s (5h:9m:32s left) Iteration 800 / LogL: -2697956.266 / Time: 3h:23m:50s (5h:6m:38s left) Iteration 810 / LogL: -2697951.418 / Time: 3h:26m:19s (5h:3m:59s left) Iteration 820 / LogL: -2697951.620 / Time: 3h:28m:55s (5h:1m:30s left) Iteration 830 / LogL: -2697955.495 / Time: 3h:31m:24s (4h:58m:51s left) Iteration 840 / LogL: -2697952.340 / Time: 3h:33m:47s (4h:56m:5s left) Iteration 850 / LogL: -2697948.995 / Time: 3h:35m:57s (4h:53m:0s left) Iteration 860 / LogL: -2697953.514 / Time: 3h:38m:36s (4h:50m:37s left) Iteration 870 / LogL: -2697954.888 / Time: 3h:40m:58s (4h:47m:50s left) Iteration 880 / LogL: -2697955.012 / Time: 3h:43m:13s (4h:44m:55s left) Iteration 890 / LogL: -2697956.563 / Time: 3h:45m:42s (4h:42m:18s left) Iteration 900 / LogL: -2697950.656 / Time: 3h:48m:5s (4h:39m:35s left) Iteration 910 / LogL: -2697952.106 / Time: 3h:50m:34s (4h:36m:58s left) Estimate model parameters (epsilon = 0.100) Initial log-likelihood: -2697945.184 Current log-likelihood at step 1: -2697945.143 Parameters optimization took 0 rounds (1.410 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! UPDATE BEST LOG-LIKELIHOOD: -2697945.143 Iteration 920 / LogL: -2697949.132 / Time: 3h:52m:49s (4h:34m:6s left) Iteration 930 / LogL: -2697958.036 / Time: 3h:55m:31s (4h:31m:46s left) Iteration 940 / LogL: -2697959.754 / Time: 3h:57m:58s (4h:29m:8s left) Iteration 950 / LogL: -2697955.737 / Time: 4h:0m:27s (4h:26m:32s left) Iteration 960 / LogL: -2697951.171 / Time: 4h:2m:52s (4h:23m:53s left) Iteration 970 / LogL: -2697950.494 / Time: 4h:5m:17s (4h:21m:13s left) Estimate model parameters (epsilon = 0.100) Initial log-likelihood: -2697945.101 Current log-likelihood at step 1: -2697945.058 Parameters optimization took 0 rounds (1.450 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! UPDATE BEST LOG-LIKELIHOOD: -2697945.058 Iteration 980 / LogL: -2697950.970 / Time: 4h:7m:32s (4h:18m:24s left) Iteration 990 / LogL: -2697949.557 / Time: 4h:9m:36s (4h:15m:24s left) NOTE: 1.071 seconds to dump checkpoint file, increase to 22.000 Iteration 1000 / LogL: -2697954.099 / Time: 4h:11m:39s (4h:12m:23s left) Iteration 1010 / LogL: -2697949.484 / Time: 4h:13m:46s (4h:9m:28s left) NOTE: 18.269 seconds to dump checkpoint file, increase to 366.000 Iteration 1020 / LogL: -2697990.457 / Time: 4h:15m:49s (4h:6m:31s left) Iteration 1030 / LogL: -2697967.741 / Time: 4h:18m:2s (4h:3m:44s left) Iteration 1040 / LogL: -2697961.007 / Time: 4h:20m:4s (4h:0m:47s left) Iteration 1050 / LogL: -2697973.688 / Time: 4h:22m:38s (3h:58m:20s left) Iteration 1060 / LogL: -2697980.161 / Time: 4h:25m:8s (3h:55m:50s left) Iteration 1070 / LogL: -2697952.917 / Time: 4h:27m:39s (3h:53m:20s left) Iteration 1080 / LogL: -2697948.247 / Time: 4h:29m:58s (3h:50m:40s left) Iteration 1090 / LogL: -2697965.084 / Time: 4h:32m:28s (3h:48m:10s left) Iteration 1100 / LogL: -2697948.734 / Time: 4h:34m:45s (3h:45m:29s left) Iteration 1110 / LogL: -2697953.634 / Time: 4h:37m:8s (3h:42m:54s left) Iteration 1120 / LogL: -2697979.049 / Time: 4h:39m:16s (3h:40m:6s left) Iteration 1130 / LogL: -2697946.669 / Time: 4h:41m:27s (3h:37m:22s left) Iteration 1140 / LogL: -2697956.878 / Time: 4h:43m:44s (3h:34m:43s left) Iteration 1150 / LogL: -2702914.808 / Time: 4h:45m:54s (3h:31m:59s left) Iteration 1160 / LogL: -2697952.970 / Time: 4h:47m:58s (3h:29m:12s left) Iteration 1170 / LogL: -2697996.997 / Time: 4h:49m:58s (3h:26m:22s left) Iteration 1180 / LogL: -2698049.926 / Time: 4h:52m:7s (3h:23m:39s left) Iteration 1190 / LogL: -2697976.544 / Time: 4h:54m:30s (3h:21m:7s left) Iteration 1200 / LogL: -2697953.022 / Time: 4h:56m:42s (3h:18m:27s left) Iteration 1210 / LogL: -2697951.690 / Time: 4h:59m:5s (3h:15m:55s left) Iteration 1220 / LogL: -2697949.758 / Time: 5h:1m:42s (3h:13m:32s left) Iteration 1230 / LogL: -2697955.392 / Time: 5h:4m:22s (3h:11m:11s left) Iteration 1240 / LogL: -2697946.749 / Time: 5h:6m:58s (3h:8m:46s left) Iteration 1250 / LogL: -2697955.553 / Time: 5h:9m:22s (3h:6m:15s left) Iteration 1260 / LogL: -2697945.917 / Time: 5h:11m:52s (3h:3m:47s left) Iteration 1270 / LogL: -2697957.156 / Time: 5h:14m:6s (3h:1m:10s left) Iteration 1280 / LogL: -2697951.367 / Time: 5h:16m:39s (2h:58m:44s left) Iteration 1290 / LogL: -2697946.326 / Time: 5h:19m:8s (2h:56m:16s left) Iteration 1300 / LogL: -2697950.479 / Time: 5h:21m:37s (2h:53m:48s left) Iteration 1310 / LogL: -2697978.164 / Time: 5h:24m:29s (2h:51m:32s left) Iteration 1320 / LogL: -2697946.284 / Time: 5h:27m:9s (2h:49m:9s left) Iteration 1330 / LogL: -2697949.040 / Time: 5h:29m:43s (2h:46m:42s left) Iteration 1340 / LogL: -2697980.384 / Time: 5h:32m:10s (2h:44m:13s left) Iteration 1350 / LogL: -2697969.135 / Time: 5h:34m:47s (2h:41m:48s left) Iteration 1360 / LogL: -2697946.918 / Time: 5h:36m:40s (2h:39m:2s left) Iteration 1370 / LogL: -2697955.228 / Time: 5h:39m:9s (2h:36m:34s left) Iteration 1380 / LogL: -2697958.663 / Time: 5h:41m:15s (2h:33m:54s left) Iteration 1390 / LogL: -2697948.639 / Time: 5h:43m:38s (2h:31m:24s left) Iteration 1400 / LogL: -2697945.351 / Time: 5h:46m:7s (2h:28m:56s left) Iteration 1410 / LogL: -2697950.117 / Time: 5h:48m:26s (2h:26m:23s left) Iteration 1420 / LogL: -2697981.011 / Time: 5h:50m:50s (2h:23m:53s left) Iteration 1430 / LogL: -2697947.032 / Time: 5h:52m:52s (2h:21m:14s left) Iteration 1440 / LogL: -2697954.865 / Time: 5h:55m:39s (2h:18m:53s left) Iteration 1450 / LogL: -2697988.301 / Time: 5h:57m:51s (2h:16m:19s left) Iteration 1460 / LogL: -2698003.068 / Time: 5h:59m:44s (2h:13m:38s left) Iteration 1470 / LogL: -2697954.579 / Time: 6h:2m:6s (2h:11m:8s left) Iteration 1480 / LogL: -2697951.376 / Time: 6h:4m:53s (2h:8m:46s left) Iteration 1490 / LogL: -2697946.587 / Time: 6h:7m:17s (2h:6m:17s left) Iteration 1500 / LogL: -2697952.560 / Time: 6h:9m:54s (2h:3m:52s left) Iteration 1510 / LogL: -2697959.802 / Time: 6h:12m:19s (2h:1m:23s left) Iteration 1520 / LogL: -2697965.722 / Time: 6h:14m:27s (1h:58m:49s left) Iteration 1530 / LogL: -2697950.081 / Time: 6h:17m:8s (1h:56m:25s left) Iteration 1540 / LogL: -2697954.741 / Time: 6h:19m:30s (1h:53m:55s left) Iteration 1550 / LogL: -2697951.341 / Time: 6h:21m:49s (1h:51m:24s left) Iteration 1560 / LogL: -2697948.735 / Time: 6h:24m:26s (1h:48m:59s left) Iteration 1570 / LogL: -2697948.772 / Time: 6h:26m:37s (1h:46m:26s left) Iteration 1580 / LogL: -2697950.842 / Time: 6h:29m:0s (1h:43m:57s left) Iteration 1590 / LogL: -2697954.559 / Time: 6h:31m:6s (1h:41m:24s left) Iteration 1600 / LogL: -2697953.840 / Time: 6h:33m:20s (1h:38m:53s left) Iteration 1610 / LogL: -2697949.090 / Time: 6h:35m:35s (1h:36m:22s left) Iteration 1620 / LogL: -2697958.555 / Time: 6h:38m:5s (1h:33m:55s left) Iteration 1630 / LogL: -2697955.701 / Time: 6h:40m:44s (1h:31m:30s left) Iteration 1640 / LogL: -2697953.395 / Time: 6h:43m:7s (1h:29m:1s left) Iteration 1650 / LogL: -2697954.174 / Time: 6h:45m:45s (1h:26m:36s left) Iteration 1660 / LogL: -2697957.219 / Time: 6h:48m:20s (1h:24m:10s left) Iteration 1670 / LogL: -2697973.615 / Time: 6h:50m:50s (1h:21m:43s left) Iteration 1680 / LogL: -2697949.115 / Time: 6h:53m:22s (1h:19m:16s left) Iteration 1690 / LogL: -2697954.846 / Time: 6h:55m:56s (1h:16m:49s left) Iteration 1700 / LogL: -2697957.039 / Time: 6h:58m:39s (1h:14m:24s left) Iteration 1710 / LogL: -2697994.493 / Time: 7h:1m:10s (1h:11m:57s left) Iteration 1720 / LogL: -2697964.238 / Time: 7h:3m:49s (1h:9m:31s left) Iteration 1730 / LogL: -2697955.749 / Time: 7h:6m:5s (1h:7m:1s left) Iteration 1740 / LogL: -2697948.878 / Time: 7h:8m:47s (1h:4m:36s left) Iteration 1750 / LogL: -2697952.836 / Time: 7h:11m:34s (1h:2m:10s left) Iteration 1760 / LogL: -2697952.614 / Time: 7h:14m:14s (0h:59m:44s left) Iteration 1770 / LogL: -2697954.419 / Time: 7h:16m:52s (0h:57m:17s left) Iteration 1780 / LogL: -2697951.899 / Time: 7h:19m:7s (0h:54m:47s left) Iteration 1790 / LogL: -2697946.298 / Time: 7h:21m:23s (0h:52m:18s left) Iteration 1800 / LogL: -2697956.523 / Time: 7h:24m:12s (0h:49m:52s left) Iteration 1810 / LogL: -2697948.302 / Time: 7h:26m:34s (0h:47m:23s left) Iteration 1820 / LogL: -2697951.591 / Time: 7h:29m:10s (0h:44m:56s left) Iteration 1830 / LogL: -2697952.668 / Time: 7h:31m:23s (0h:42m:26s left) Iteration 1840 / LogL: -2697949.991 / Time: 7h:33m:43s (0h:39m:58s left) Iteration 1850 / LogL: -2697960.948 / Time: 7h:36m:19s (0h:37m:30s left) Iteration 1860 / LogL: -2697979.364 / Time: 7h:38m:38s (0h:35m:1s left) Iteration 1870 / LogL: -2697979.103 / Time: 7h:41m:1s (0h:32m:33s left) Iteration 1880 / LogL: -2697952.553 / Time: 7h:43m:26s (0h:30m:5s left) Iteration 1890 / LogL: -2697967.860 / Time: 7h:45m:46s (0h:27m:36s left) Iteration 1900 / LogL: -2697957.058 / Time: 7h:47m:59s (0h:25m:8s left) Iteration 1910 / LogL: -2697960.522 / Time: 7h:50m:22s (0h:22m:40s left) Iteration 1920 / LogL: -2697946.603 / Time: 7h:52m:54s (0h:20m:12s left) Iteration 1930 / LogL: -2697957.418 / Time: 7h:55m:30s (0h:17m:44s left) Iteration 1940 / LogL: -2697952.461 / Time: 7h:57m:32s (0h:15m:16s left) Iteration 1950 / LogL: -2698006.481 / Time: 8h:0m:26s (0h:12m:49s left) Iteration 1960 / LogL: -2697975.186 / Time: 8h:2m:58s (0h:10m:21s left) Iteration 1970 / LogL: -2697987.784 / Time: 8h:5m:11s (0h:7m:53s left) Iteration 1980 / LogL: -2698010.303 / Time: 8h:7m:30s (0h:5m:25s left) Estimate model parameters (epsilon = 0.100) Initial log-likelihood: -2697945.044 Current log-likelihood at step 1: -2697944.989 Parameters optimization took 0 rounds (1.459 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! UPDATE BEST LOG-LIKELIHOOD: -2697944.989 Iteration 1990 / LogL: -2697959.652 / Time: 8h:9m:51s (0h:2m:57s left) Iteration 2000 / LogL: -2697978.610 / Time: 8h:12m:16s (0h:0m:29s left) TREE SEARCH COMPLETED AFTER 2003 ITERATIONS / Time: 8h:12m:57s -------------------------------------------------------------------- | FINALIZING TREE SEARCH | -------------------------------------------------------------------- Performs final model parameters optimization Estimate model parameters (epsilon = 0.010) Initial log-likelihood: -2697944.989 Current log-likelihood at step 1: -2697944.945 Current log-likelihood at step 2: -2697944.894 Current log-likelihood at step 3: -2697944.865 Current log-likelihood at step 4: -2697944.837 Current log-likelihood at step 5: -2697944.808 Current log-likelihood at step 6: -2697944.780 Current log-likelihood at step 7: -2697944.752 Current log-likelihood at step 8: -2697944.726 Current log-likelihood at step 9: -2697944.699 Current log-likelihood at step 10: -2697944.674 Current log-likelihood at step 11: -2697944.648 Current log-likelihood at step 12: -2697944.623 Current log-likelihood at step 13: -2697944.599 Current log-likelihood at step 14: -2697944.575 Current log-likelihood at step 15: -2697944.551 Current log-likelihood at step 16: -2697944.528 Current log-likelihood at step 17: -2697944.506 Current log-likelihood at step 18: -2697944.483 Current log-likelihood at step 19: -2697944.461 Current log-likelihood at step 20: -2697944.439 Current log-likelihood at step 21: -2697944.418 Current log-likelihood at step 22: -2697944.398 Current log-likelihood at step 23: -2697944.377 Current log-likelihood at step 24: -2697944.357 Current log-likelihood at step 25: -2697944.338 Current log-likelihood at step 26: -2697944.318 Current log-likelihood at step 27: -2697944.299 Current log-likelihood at step 28: -2697944.280 Current log-likelihood at step 29: -2697944.261 Current log-likelihood at step 30: -2697944.243 Current log-likelihood at step 31: -2697944.225 Current log-likelihood at step 32: -2697944.208 Current log-likelihood at step 33: -2697944.190 Current log-likelihood at step 34: -2697944.173 Current log-likelihood at step 35: -2697944.156 Current log-likelihood at step 36: -2697944.140 Current log-likelihood at step 37: -2697944.124 Current log-likelihood at step 38: -2697944.108 Current log-likelihood at step 39: -2697944.091 Current log-likelihood at step 40: -2697944.076 Current log-likelihood at step 41: -2697944.061 Current log-likelihood at step 42: -2697944.046 Current log-likelihood at step 43: -2697944.031 Current log-likelihood at step 44: -2697944.017 Current log-likelihood at step 45: -2697944.002 Current log-likelihood at step 46: -2697943.987 Current log-likelihood at step 47: -2697943.974 Current log-likelihood at step 48: -2697943.960 Current log-likelihood at step 49: -2697943.946 Current log-likelihood at step 50: -2697943.933 Current log-likelihood at step 51: -2697943.920 Current log-likelihood at step 52: -2697943.907 Current log-likelihood at step 53: -2697943.894 Current log-likelihood at step 54: -2697943.882 Current log-likelihood at step 55: -2697943.868 Current log-likelihood at step 56: -2697943.856 Current log-likelihood at step 57: -2697943.844 Current log-likelihood at step 58: -2697943.832 Current log-likelihood at step 59: -2697943.820 Current log-likelihood at step 60: -2697943.809 Current log-likelihood at step 61: -2697943.797 Current log-likelihood at step 62: -2697943.785 Current log-likelihood at step 63: -2697943.774 Current log-likelihood at step 64: -2697943.763 Current log-likelihood at step 65: -2697943.752 Current log-likelihood at step 66: -2697943.742 Current log-likelihood at step 67: -2697943.731 Current log-likelihood at step 68: -2697943.721 Current log-likelihood at step 69: -2697943.710 Current log-likelihood at step 70: -2697943.699 Current log-likelihood at step 71: -2697943.689 Current log-likelihood at step 72: -2697943.679 Partition-specific rates: 1.395 0.028 0.979 1.721 0.181 1.279 0.162 1.386 0.309 1.316 0.203 1.438 1.078 1.985 0.405 1.192 0.229 1.275 0.172 2.323 0.786 0.736 0.126 1.496 0.276 3.805 0.567 0.094 3.849 0.801 0.087 1.250 1.209 0.074 0.600 1.920 0.353 1.754 0.968 1.858 0.477 0.296 1.354 1.679 0.164 1.229 0.329 2.224 0.676 1.394 18.361 0.849 0.826 0.073 0.726 0.942 0.100 1.060 0.522 0.380 4.834 0.224 1.945 0.180 1.210 0.052 3.494 1.730 0.787 0.079 1.128 1.223 3.992 0.137 0.374 0.099 0.418 1.033 0.079 1.639 0.188 2.028 2.388 1.310 0.123 1.588 1.203 0.564 1.326 2.178 0.968 2.756 0.650 1.721 0.164 1.462 1.016 2.041 0.482 0.044 0.459 0.723 2.522 0.928 0.151 1.077 1.866 0.651 1.844 0.193 1.003 0.598 1.128 0.744 1.872 0.268 1.686 0.153 1.548 0.296 1.847 0.445 1.097 0.278 0.544 2.784 1.157 0.473 1.003 0.053 0.676 0.047 1.282 1.470 0.783 0.582 1.101 0.842 0.112 0.798 0.166 1.551 0.491 0.638 0.089 0.388 0.906 2.695 0.277 1.006 0.101 0.958 0.147 0.466 0.945 0.202 1.422 0.686 0.073 4.287 4.422 1.294 1.157 0.673 1.917 1.145 2.090 0.164 0.952 1.006 1.471 0.128 1.047 0.062 3.187 1.134 0.238 1.230 0.280 1.200 0.091 0.519 1.441 0.071 0.909 0.308 0.897 0.404 2.111 0.391 0.261 1.747 0.752 0.225 1.537 0.778 0.513 0.274 4.150 0.425 0.155 2.934 0.665 2.296 0.711 0.071 0.946 0.220 1.297 1.789 1.336 0.737 0.591 0.355 2.075 0.356 0.959 0.127 9.020 0.228 6.925 0.508 0.184 0.736 0.107 0.487 1.398 0.448 2.455 0.839 0.449 1.885 0.477 1.386 0.248 0.769 0.350 1.931 1.533 0.379 1.028 0.280 1.224 0.140 1.610 0.490 0.975 0.702 1.569 1.218 0.117 0.929 0.802 2.004 1.043 0.337 0.520 2.878 1.395 0.171 0.913 2.256 1.842 1.396 2.566 0.071 0.435 0.725 1.819 0.342 1.353 0.078 0.188 2.484 1.272 2.611 1.217 0.277 0.760 3.371 0.359 0.406 1.762 1.610 0.374 1.887 0.611 3.445 3.417 0.708 0.895 1.076 1.900 0.149 5.149 0.566 0.537 3.097 0.355 2.534 1.423 10.029 1.036 1.258 1.542 0.100 1.402 0.739 0.194 0.825 0.172 2.397 1.805 0.698 0.620 0.532 0.048 1.346 0.897 2.528 1.101 0.192 1.900 0.639 0.720 1.741 1.565 1.363 0.568 0.600 0.158 0.277 2.529 1.501 1.295 1.731 0.336 1.034 0.409 0.406 2.474 0.498 3.385 0.174 1.475 1.273 2.255 1.254 1.074 3.371 1.620 0.864 0.478 2.374 0.754 1.608 2.109 0.507 0.742 0.293 0.285 0.304 1.836 1.093 1.964 2.774 0.313 0.251 0.107 3.225 0.335 0.571 1.930 2.764 2.524 0.895 0.289 0.720 0.551 0.507 0.120 0.676 3.625 2.986 0.785 0.045 0.572 1.563 2.177 2.065 1.450 2.472 0.375 0.260 2.375 1.179 0.457 0.019 1.317 1.686 1.222 1.311 5.937 2.362 1.151 0.105 0.999 0.843 0.693 2.163 0.346 1.004 0.266 0.077 5.067 1.731 0.886 3.653 0.280 2.092 1.287 1.888 4.440 3.843 0.061 0.344 1.397 33.687 0.490 0.107 2.709 0.281 0.832 4.633 1.180 1.638 2.223 1.948 1.157 2.039 1.350 0.938 1.328 0.796 2.140 0.782 1.462 1.610 0.555 1.552 0.362 2.119 1.751 2.797 2.204 3.305 0.980 2.083 2.924 1.517 0.263 2.595 2.600 1.449 0.972 1.244 3.741 2.006 0.362 2.379 0.525 0.135 1.019 6.851 1.741 0.169 7.173 0.063 1.281 0.098 0.653 3.933 2.438 2.335 0.541 0.704 0.754 0.636 1.599 0.119 0.975 1.471 2.584 0.053 3.249 0.426 1.035 1.241 4.438 1.078 2.071 1.087 4.542 0.325 1.072 1.074 2.766 0.203 0.414 0.392 0.719 0.041 0.081 1.521 0.402 2.515 1.130 1.046 0.284 1.721 3.737 0.706 1.211 2.267 2.281 1.133 2.953 1.889 0.937 2.541 0.199 7.418 0.017 3.163 2.189 2.432 3.387 2.832 0.322 2.334 1.153 1.607 1.459 0.563 1.804 0.772 1.497 0.790 1.094 1.354 1.883 1.627 0.518 1.113 1.571 3.212 3.540 0.876 21.770 4.373 1.666 0.328 2.181 33.801 20.473 3.220 20.322 Parameters optimization took 71 rounds (91.890 sec) WARNING: Estimated model parameters are at boundary that can cause numerical instability! Partition information was printed to DNA_run_00.best_model.nex BEST SCORE FOUND : -2697943.679 Total tree length: 2.285 Total number of iterations: 2003 CPU time used for tree search: 224962.890 sec (62h:29m:22s) Wall-clock time used for tree search: 29405.260 sec (8h:10m:5s) Total CPU time used: 227018.674 sec (63h:3m:38s) Total wall-clock time used: 29669.050 sec (8h:14m:29s) Analysis results written to: IQ-TREE report: DNA_run_00.iqtree Maximum-likelihood tree: DNA_run_00.treefile Likelihood distances: DNA_run_00.mldist Screen log file: DNA_run_00.log